Query 004419
Match_columns 754
No_of_seqs 396 out of 2815
Neff 10.9
Searched_HMMs 29240
Date Tue Mar 26 00:39:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004419.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004419hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ayc_A E3 ubiquitin-protein li 99.6 1.8E-15 6.3E-20 130.3 9.0 48 699-747 53-100 (138)
2 1t1h_A Gspef-atpub14, armadill 99.6 1.7E-15 5.9E-20 116.4 4.8 58 696-753 5-62 (78)
3 3ng2_A RNF4, snurf, ring finge 99.5 2E-15 6.8E-20 113.9 3.8 56 698-754 9-71 (71)
4 3fl2_A E3 ubiquitin-protein li 99.5 3.5E-15 1.2E-19 126.2 4.2 55 699-753 52-107 (124)
5 2egp_A Tripartite motif-contai 99.5 2.5E-15 8.5E-20 116.1 3.0 61 694-754 7-73 (79)
6 3lrq_A E3 ubiquitin-protein li 99.5 5.5E-15 1.9E-19 119.1 5.1 57 698-754 21-78 (100)
7 2kre_A Ubiquitin conjugation f 99.5 4.1E-15 1.4E-19 118.5 4.1 58 695-753 25-82 (100)
8 2xeu_A Ring finger protein 4; 99.5 3.1E-15 1E-19 110.3 2.7 55 699-754 3-64 (64)
9 1g25_A CDK-activating kinase a 99.5 5.8E-15 2E-19 108.6 4.1 56 699-754 3-63 (65)
10 2ecy_A TNF receptor-associated 99.5 7.5E-15 2.6E-19 108.4 4.6 55 695-749 11-65 (66)
11 2kr4_A Ubiquitin conjugation f 99.5 4.4E-15 1.5E-19 114.8 2.8 58 695-753 10-67 (85)
12 2f42_A STIP1 homology and U-bo 99.5 1.2E-14 4.2E-19 127.4 5.8 59 695-753 102-160 (179)
13 2ysl_A Tripartite motif-contai 99.5 1.6E-14 5.5E-19 109.5 4.9 57 694-750 15-73 (73)
14 2djb_A Polycomb group ring fin 99.5 1.6E-14 5.4E-19 108.7 4.2 58 694-752 10-68 (72)
15 3ztg_A E3 ubiquitin-protein li 99.5 1.5E-14 5E-19 115.3 3.9 59 695-753 9-70 (92)
16 1wgm_A Ubiquitin conjugation f 99.5 1.9E-14 6.6E-19 114.1 4.4 58 695-753 18-76 (98)
17 2ecw_A Tripartite motif-contai 99.5 2.6E-14 8.9E-19 112.4 5.0 61 694-754 14-79 (85)
18 1z6u_A NP95-like ring finger p 99.5 1.6E-14 5.4E-19 125.4 3.4 54 700-753 79-133 (150)
19 2ecv_A Tripartite motif-contai 99.5 2.9E-14 9.9E-19 112.2 4.6 61 694-754 14-79 (85)
20 2yur_A Retinoblastoma-binding 99.5 3E-14 1E-18 107.6 4.1 55 694-748 10-66 (74)
21 1jm7_A BRCA1, breast cancer ty 99.4 4.1E-14 1.4E-18 117.7 4.5 58 696-753 18-77 (112)
22 2y43_A E3 ubiquitin-protein li 99.4 2.1E-14 7.3E-19 115.9 2.2 54 699-753 22-76 (99)
23 2ct2_A Tripartite motif protei 99.4 6.6E-14 2.3E-18 110.7 4.7 58 695-752 11-74 (88)
24 2csy_A Zinc finger protein 183 99.4 6.9E-14 2.4E-18 108.1 4.0 49 696-745 12-60 (81)
25 1jm7_B BARD1, BRCA1-associated 99.4 6.8E-14 2.3E-18 116.6 2.6 55 696-753 19-74 (117)
26 1e4u_A Transcriptional repress 99.4 2.4E-13 8.2E-18 102.3 5.1 56 696-751 8-67 (78)
27 2ckl_A Polycomb group ring fin 99.4 1.1E-13 3.6E-18 113.8 3.3 51 696-747 12-63 (108)
28 4ic3_A E3 ubiquitin-protein li 99.4 6.9E-14 2.3E-18 105.2 1.9 51 697-754 22-73 (74)
29 2d8t_A Dactylidin, ring finger 99.4 7.2E-14 2.5E-18 104.7 1.6 52 698-750 14-65 (71)
30 2ysj_A Tripartite motif-contai 99.4 2.4E-13 8E-18 99.3 3.8 47 694-740 15-63 (63)
31 1rmd_A RAG1; V(D)J recombinati 99.4 1.6E-13 5.6E-18 114.4 2.6 54 699-752 23-76 (116)
32 2yu4_A E3 SUMO-protein ligase 99.4 1.8E-13 6E-18 108.4 2.7 57 697-753 5-70 (94)
33 2c2l_A CHIP, carboxy terminus 99.4 1.6E-13 5.4E-18 136.2 2.9 56 698-753 207-262 (281)
34 2ecg_A Baculoviral IAP repeat- 99.4 2.2E-13 7.5E-18 102.9 3.0 51 697-754 23-74 (75)
35 3hct_A TNF receptor-associated 99.4 1.7E-13 5.7E-18 114.5 2.4 59 694-752 13-71 (118)
36 2ecn_A Ring finger protein 141 99.3 1.8E-13 6.1E-18 102.5 1.9 58 694-753 10-67 (70)
37 2ckl_B Ubiquitin ligase protei 99.3 2.7E-13 9.3E-18 121.1 2.0 51 697-747 52-103 (165)
38 2yho_A E3 ubiquitin-protein li 99.3 4.1E-13 1.4E-17 101.8 2.6 59 689-754 8-67 (79)
39 1bor_A Transcription factor PM 99.3 3.5E-13 1.2E-17 94.9 1.9 47 698-748 5-51 (56)
40 2ecj_A Tripartite motif-contai 99.3 8.6E-13 3E-17 94.7 3.8 47 694-740 10-58 (58)
41 3l11_A E3 ubiquitin-protein li 99.3 3.8E-13 1.3E-17 112.0 2.1 48 699-746 15-62 (115)
42 2ect_A Ring finger protein 126 99.3 9.6E-13 3.3E-17 100.9 4.2 56 696-752 12-70 (78)
43 2ea6_A Ring finger protein 4; 99.3 6.4E-13 2.2E-17 99.5 2.9 50 696-746 12-68 (69)
44 1c1g_A Tropomyosin; contractIl 99.3 2.2E-07 7.4E-12 92.1 43.7 61 612-672 219-279 (284)
45 3knv_A TNF receptor-associated 99.3 1.4E-12 4.6E-17 111.7 2.7 52 694-745 26-77 (141)
46 2ecm_A Ring finger and CHY zin 99.3 2.5E-12 8.4E-17 91.0 3.4 47 699-746 5-55 (55)
47 2l0b_A E3 ubiquitin-protein li 99.2 3.3E-12 1.1E-16 100.7 4.2 48 698-746 39-89 (91)
48 1chc_A Equine herpes virus-1 r 99.2 2.2E-12 7.6E-17 95.9 3.0 47 699-746 5-52 (68)
49 2vje_A E3 ubiquitin-protein li 99.2 1.6E-12 5.3E-17 94.2 2.0 53 699-754 8-63 (64)
50 1iym_A EL5; ring-H2 finger, ub 99.2 3.4E-12 1.2E-16 90.2 3.6 48 697-745 3-54 (55)
51 3htk_C E3 SUMO-protein ligase 99.2 1.4E-12 4.7E-17 119.7 1.6 59 695-753 177-239 (267)
52 2vje_B MDM4 protein; proto-onc 99.2 1.6E-12 5.3E-17 93.9 1.5 53 699-754 7-62 (63)
53 4ap4_A E3 ubiquitin ligase RNF 99.2 2.8E-12 9.7E-17 110.8 3.4 56 698-754 6-68 (133)
54 2bay_A PRE-mRNA splicing facto 99.2 2.3E-12 8E-17 91.4 2.1 54 700-754 4-58 (61)
55 2kiz_A E3 ubiquitin-protein li 99.2 5.5E-12 1.9E-16 94.0 4.0 50 697-747 12-64 (69)
56 2y1n_A E3 ubiquitin-protein li 99.2 5E-12 1.7E-16 124.8 4.6 56 696-751 329-384 (389)
57 1x4j_A Ring finger protein 38; 99.2 4.6E-12 1.6E-16 96.1 2.9 49 698-747 22-73 (75)
58 3hcs_A TNF receptor-associated 99.2 5.4E-12 1.8E-16 113.4 2.8 59 694-752 13-71 (170)
59 4ap4_A E3 ubiquitin ligase RNF 99.2 4.7E-12 1.6E-16 109.4 1.9 56 698-754 71-133 (133)
60 2ep4_A Ring finger protein 24; 99.2 9.7E-12 3.3E-16 94.1 2.5 52 695-747 11-65 (74)
61 2ea5_A Cell growth regulator w 99.2 1.4E-11 4.8E-16 90.1 3.2 48 699-753 15-63 (68)
62 1v87_A Deltex protein 2; ring- 99.1 2.4E-11 8.3E-16 101.0 3.9 48 700-747 26-95 (114)
63 3t6p_A Baculoviral IAP repeat- 99.1 2.4E-11 8.1E-16 120.1 1.4 59 689-754 285-344 (345)
64 2ecl_A Ring-box protein 2; RNF 99.0 5.8E-11 2E-15 90.9 2.5 49 700-749 16-79 (81)
65 3dpl_R Ring-box protein 1; ubi 99.0 2.7E-10 9.2E-15 91.2 3.3 47 700-747 38-102 (106)
66 1wim_A KIAA0161 protein; ring 98.8 3.2E-10 1.1E-14 90.0 -0.3 53 698-750 4-70 (94)
67 4a0k_B E3 ubiquitin-protein li 98.8 3.8E-10 1.3E-14 91.4 0.0 48 700-748 49-114 (117)
68 1i84_S Smooth muscle myosin he 98.8 1.2E-08 4.3E-13 119.9 10.0 23 659-681 1145-1167(1184)
69 3na7_A HP0958; flagellar bioge 98.7 1.9E-06 6.6E-11 82.2 20.9 12 734-745 222-233 (256)
70 3vk6_A E3 ubiquitin-protein li 98.6 1.6E-08 5.5E-13 76.3 3.5 47 700-746 2-49 (101)
71 2d8s_A Cellular modulator of i 98.5 5.4E-08 1.8E-12 73.2 3.7 50 699-748 15-72 (80)
72 3na7_A HP0958; flagellar bioge 98.3 7E-05 2.4E-09 71.4 20.9 30 700-729 199-232 (256)
73 2ct0_A Non-SMC element 1 homol 98.2 1.7E-06 5.7E-11 63.3 4.4 48 700-747 16-65 (74)
74 1vyx_A ORF K3, K3RING; zinc-bi 97.7 2.9E-05 9.9E-10 54.5 3.9 48 699-746 6-59 (60)
75 3k1l_B Fancl; UBC, ring, RWD, 97.6 6.3E-06 2.1E-10 78.4 -0.5 49 699-747 308-374 (381)
76 1joc_A EEA1, early endosomal a 97.4 0.00049 1.7E-08 56.7 7.9 31 700-730 70-104 (125)
77 2v71_A Nuclear distribution pr 97.3 0.066 2.3E-06 46.7 22.4 37 535-571 91-127 (189)
78 3nw0_A Non-structural maintena 97.1 0.00046 1.6E-08 64.3 4.8 49 699-747 180-230 (238)
79 3m62_A Ubiquitin conjugation f 97.0 0.00096 3.3E-08 73.6 7.0 60 693-753 885-945 (968)
80 3o0z_A RHO-associated protein 96.9 0.15 5.2E-06 43.1 21.5 15 559-573 61-75 (168)
81 2jun_A Midline-1; B-BOX, TRIM, 96.6 0.00077 2.6E-08 53.8 2.2 31 699-729 3-36 (101)
82 2efr_A General control protein 96.6 0.27 9.2E-06 41.4 23.7 72 608-679 69-140 (155)
83 2cs3_A Protein C14ORF4, MY039 96.5 0.0025 8.6E-08 45.1 3.9 42 698-739 14-63 (93)
84 3vkg_A Dynein heavy chain, cyt 96.3 1.2 4.2E-05 57.0 29.0 55 601-655 2020-2074(3245)
85 3vkg_A Dynein heavy chain, cyt 96.2 1.7 5.7E-05 55.9 29.2 20 656-675 2082-2101(3245)
86 2fxo_A Myosin heavy chain, car 95.2 1.1 3.8E-05 36.9 19.3 15 473-487 17-31 (129)
87 2fxo_A Myosin heavy chain, car 95.1 1.2 4E-05 36.8 19.1 45 634-678 80-124 (129)
88 1weo_A Cellulose synthase, cat 94.6 0.035 1.2E-06 40.7 3.9 46 700-745 17-69 (93)
89 3i2d_A E3 SUMO-protein ligase 94.5 0.015 5.3E-07 56.7 2.6 55 695-749 245-303 (371)
90 2fiy_A Protein FDHE homolog; F 93.3 0.012 4.2E-07 56.7 -0.5 44 699-743 182-231 (309)
91 4fo9_A E3 SUMO-protein ligase 93.1 0.049 1.7E-06 53.1 3.3 55 696-750 212-270 (360)
92 1z60_A TFIIH basal transcripti 92.8 0.065 2.2E-06 36.6 2.6 41 700-741 16-59 (59)
93 2b9c_A Striated-muscle alpha t 92.5 4.2 0.00015 34.1 14.7 43 656-698 99-143 (147)
94 1y02_A CARP2, FYVE-ring finger 92.4 0.014 4.7E-07 47.1 -1.4 42 700-742 20-65 (120)
95 2zet_C Melanophilin; complex, 91.9 0.26 8.8E-06 41.8 5.8 43 699-741 68-115 (153)
96 3tnu_B Keratin, type II cytosk 91.5 5 0.00017 32.9 13.8 10 536-545 86-95 (129)
97 3tnu_A Keratin, type I cytoske 91.5 3.5 0.00012 34.0 12.2 14 535-548 87-100 (131)
98 3u59_A Tropomyosin beta chain; 91.2 4.4 0.00015 31.6 15.2 12 662-673 83-94 (101)
99 2ko5_A Ring finger protein Z; 91.1 0.13 4.4E-06 38.2 2.7 46 698-746 27-73 (99)
100 2ocy_A RAB guanine nucleotide 90.1 7.5 0.00026 32.6 18.9 31 604-634 117-147 (154)
101 3mpx_A FYVE, rhogef and PH dom 88.8 0.08 2.7E-06 55.2 0.0 31 700-730 376-410 (434)
102 1vfy_A Phosphatidylinositol-3- 88.7 0.15 5E-06 37.2 1.3 30 700-729 12-45 (73)
103 2yw8_A RUN and FYVE domain-con 87.8 0.15 5.3E-06 38.1 1.0 32 699-730 19-54 (82)
104 1ic2_A Tropomyosin alpha chain 87.7 6.9 0.00023 28.9 11.4 69 74-142 5-73 (81)
105 2xqn_T Testin, TESS; metal-bin 87.3 0.44 1.5E-05 39.3 3.7 46 700-748 31-77 (126)
106 1m3v_A FLIN4, fusion of the LI 87.1 0.31 1.1E-05 40.0 2.5 49 700-749 33-84 (122)
107 4ayb_P DNA-directed RNA polyme 86.9 0.079 2.7E-06 33.4 -0.8 26 715-743 7-32 (48)
108 1z2q_A LM5-1; membrane protein 86.6 0.2 6.7E-06 37.8 1.0 47 700-746 22-79 (84)
109 3t7l_A Zinc finger FYVE domain 86.4 0.22 7.5E-06 38.1 1.2 31 700-730 21-55 (90)
110 2jee_A YIIU; FTSZ, septum, coi 86.3 7.8 0.00027 28.2 11.9 66 72-137 10-75 (81)
111 1wfk_A Zinc finger, FYVE domai 85.7 0.19 6.6E-06 38.1 0.6 31 700-730 10-44 (88)
112 2ct7_A Ring finger protein 31; 85.5 0.091 3.1E-06 39.9 -1.4 29 701-729 27-61 (86)
113 3ghg_A Fibrinogen alpha chain; 85.4 16 0.00056 37.0 14.0 36 621-656 115-150 (562)
114 1x4u_A Zinc finger, FYVE domai 85.1 0.22 7.6E-06 37.5 0.6 30 700-729 15-48 (84)
115 1zbd_B Rabphilin-3A; G protein 84.4 2.1 7.1E-05 35.3 6.2 45 698-742 54-106 (134)
116 3ol1_A Vimentin; structural ge 83.5 16 0.00054 29.4 14.0 30 652-681 77-106 (119)
117 2cup_A Skeletal muscle LIM-pro 83.2 0.55 1.9E-05 36.9 2.2 46 700-748 34-80 (101)
118 1dvp_A HRS, hepatocyte growth 83.1 0.29 9.8E-06 45.1 0.6 32 699-730 161-196 (220)
119 4gkw_A Spindle assembly abnorm 83.0 16 0.00053 28.9 23.0 56 364-419 106-161 (167)
120 2jne_A Hypothetical protein YF 82.3 0.1 3.6E-06 39.0 -2.1 40 700-745 33-72 (101)
121 2jtn_A LIM domain-binding prot 81.9 0.88 3E-05 40.4 3.3 46 700-748 88-133 (182)
122 3zyq_A Hepatocyte growth facto 81.5 0.39 1.3E-05 44.3 0.9 31 700-730 165-199 (226)
123 2jrp_A Putative cytoplasmic pr 81.3 0.11 3.9E-06 37.9 -2.2 19 734-752 51-69 (81)
124 2v66_B Nuclear distribution pr 81.0 18 0.00062 28.3 16.6 35 535-569 38-72 (111)
125 2rgt_A Fusion of LIM/homeobox 80.9 1.2 4E-05 39.0 3.7 46 700-748 34-79 (169)
126 2gmg_A Hypothetical protein PF 79.8 0.61 2.1E-05 35.9 1.2 28 712-745 68-95 (105)
127 1vd4_A Transcription initiatio 79.7 0.17 5.8E-06 35.5 -1.8 40 699-748 14-53 (62)
128 2xjy_A Rhombotin-2; oncoprotei 78.0 1.2 4.3E-05 36.9 2.8 48 700-748 30-80 (131)
129 3pwf_A Rubrerythrin; non heme 77.9 0.85 2.9E-05 39.7 1.8 12 734-745 153-164 (170)
130 4gzn_C ZFP-57, zinc finger pro 77.9 0.87 3E-05 31.5 1.5 43 698-747 3-45 (60)
131 3cvf_A Homer-3, homer protein 77.5 18 0.00062 26.3 8.7 39 105-143 36-74 (79)
132 1rut_X Flinc4, fusion protein 77.2 0.91 3.1E-05 40.6 1.9 48 700-748 33-83 (188)
133 1deq_A Fibrinogen (alpha chain 76.7 36 0.0012 33.0 12.5 41 21-61 58-98 (390)
134 2jmo_A Parkin; IBR, E3 ligase, 76.3 0.33 1.1E-05 36.1 -1.1 33 699-731 25-70 (80)
135 2jrp_A Putative cytoplasmic pr 76.1 0.47 1.6E-05 34.7 -0.3 40 700-745 3-42 (81)
136 1lko_A Rubrerythrin all-iron(I 76.1 0.94 3.2E-05 40.4 1.6 10 734-743 171-180 (191)
137 3s4r_A Vimentin; alpha-helix, 75.0 25 0.00086 26.7 12.0 24 571-594 13-36 (93)
138 3uk3_C Zinc finger protein 217 74.2 1.2 4.2E-05 30.0 1.5 42 699-747 4-45 (57)
139 2eps_A POZ-, at HOOK-, and zin 74.2 1.4 4.7E-05 29.5 1.7 43 699-747 12-54 (54)
140 2k5c_A Uncharacterized protein 73.8 0.87 3E-05 32.5 0.6 17 734-750 51-67 (95)
141 2ctu_A Zinc finger protein 483 73.8 1.1 3.7E-05 32.2 1.2 35 699-747 18-52 (73)
142 3bas_A Myosin heavy chain, str 73.2 27 0.00093 26.2 11.9 25 647-671 59-83 (89)
143 2lbm_A Transcriptional regulat 73.1 2.5 8.4E-05 35.2 3.2 44 699-742 63-116 (142)
144 1wff_A Riken cDNA 2810002D23 p 73.0 1.9 6.3E-05 31.8 2.2 47 699-749 25-73 (85)
145 1wil_A KIAA1045 protein; ring 73.0 3.1 0.00011 30.3 3.2 32 698-730 14-48 (89)
146 6rxn_A Rubredoxin; electron tr 72.9 1.2 4.2E-05 28.6 1.1 8 736-743 32-39 (46)
147 2d8v_A Zinc finger FYVE domain 71.8 1.5 5E-05 30.2 1.3 31 699-730 8-39 (67)
148 1yuz_A Nigerythrin; rubrythrin 71.8 2.5 8.6E-05 37.9 3.3 11 735-745 187-197 (202)
149 2lcq_A Putative toxin VAPC6; P 71.7 1 3.5E-05 39.2 0.7 26 714-746 135-160 (165)
150 3bas_A Myosin heavy chain, str 71.5 30 0.001 26.0 12.5 13 474-486 19-31 (89)
151 1gh9_A 8.3 kDa protein (gene M 69.9 0.52 1.8E-05 33.7 -1.3 16 734-750 21-36 (71)
152 2v66_B Nuclear distribution pr 69.7 38 0.0013 26.5 16.2 22 467-488 8-29 (111)
153 3a7p_A Autophagy protein 16; c 69.6 47 0.0016 27.5 13.3 19 544-562 108-126 (152)
154 2xzr_A Immunoglobulin-binding 68.3 34 0.0012 25.3 17.0 7 662-668 94-100 (114)
155 2dmi_A Teashirt homolog 3; zin 68.1 0.99 3.4E-05 36.3 -0.2 49 699-747 19-93 (115)
156 1iml_A CRIP, cysteine rich int 67.3 3.8 0.00013 29.8 3.0 42 700-744 28-71 (76)
157 3mjh_B Early endosome antigen 66.7 1.4 4.6E-05 26.2 0.3 14 699-712 5-18 (34)
158 2lv2_A Insulinoma-associated p 65.9 1.5 5.1E-05 33.0 0.4 43 699-748 28-70 (85)
159 1bbo_A Human enhancer-binding 65.4 1.9 6.5E-05 29.0 0.9 41 700-747 2-42 (57)
160 1x61_A Thyroid receptor intera 65.3 4.9 0.00017 28.8 3.2 32 700-731 34-66 (72)
161 2yt9_A Zinc finger-containing 65.3 5.4 0.00019 30.3 3.7 14 734-747 65-78 (95)
162 3c5k_A HD6, histone deacetylas 64.6 2.2 7.5E-05 33.7 1.2 24 699-722 24-47 (109)
163 2ds5_A CLPX, ATP-dependent CLP 64.6 3.3 0.00011 27.3 1.8 34 698-731 10-45 (51)
164 2kdx_A HYPA, hydrogenase/ureas 64.4 2.5 8.5E-05 34.2 1.5 22 716-744 78-100 (119)
165 3s4r_A Vimentin; alpha-helix, 64.1 45 0.0015 25.3 12.7 82 178-273 9-90 (93)
166 3a1b_A DNA (cytosine-5)-methyl 64.0 2.3 7.9E-05 35.8 1.3 43 699-742 79-133 (159)
167 1ovx_A ATP-dependent CLP prote 63.3 2.8 9.7E-05 29.3 1.4 34 699-732 18-53 (67)
168 2adr_A ADR1; transcription reg 62.9 1.5 5E-05 30.1 -0.1 41 700-747 3-43 (60)
169 4h22_A Leucine-rich repeat fli 62.2 50 0.0017 25.2 10.1 59 616-674 23-81 (103)
170 2gqj_A Zinc finger protein KIA 62.1 2.2 7.4E-05 33.1 0.7 44 698-747 23-67 (98)
171 1x6e_A Zinc finger protein 24; 62.0 2.7 9.3E-05 30.1 1.2 43 698-747 13-55 (72)
172 2lce_A B-cell lymphoma 6 prote 61.6 3 0.0001 30.0 1.4 43 698-747 16-58 (74)
173 2con_A RUH-035 protein, NIN on 61.4 0.99 3.4E-05 32.9 -1.2 9 734-742 30-38 (79)
174 2wbs_A Krueppel-like factor 4; 61.3 5.8 0.0002 29.6 3.1 14 734-747 65-78 (89)
175 2pv0_B DNA (cytosine-5)-methyl 61.3 5 0.00017 39.6 3.3 44 700-743 94-148 (386)
176 3ql9_A Transcriptional regulat 61.1 5.6 0.00019 32.4 3.0 44 699-742 57-110 (129)
177 2ee8_A Protein ODD-skipped-rel 60.9 11 0.00038 29.2 4.9 13 735-747 74-86 (106)
178 3i00_A HIP-I, huntingtin-inter 60.8 63 0.0021 25.8 10.5 12 240-251 48-59 (120)
179 2l3k_A Rhombotin-2, linker, LI 60.5 5.8 0.0002 32.3 3.1 43 700-745 37-81 (123)
180 2ebt_A Krueppel-like factor 5; 60.3 8.1 0.00028 29.6 3.9 49 699-747 15-88 (100)
181 2jr6_A UPF0434 protein NMA0874 60.0 1.5 5.2E-05 31.1 -0.5 15 696-710 5-19 (68)
182 2ctd_A Zinc finger protein 512 59.6 5.1 0.00017 30.8 2.5 42 698-747 33-75 (96)
183 2kmk_A Zinc finger protein GFI 59.5 5.2 0.00018 29.2 2.5 14 734-747 57-70 (82)
184 2zqm_A Prefoldin beta subunit 59.2 65 0.0022 25.5 11.6 29 194-222 79-107 (117)
185 2lt7_A Transcriptional regulat 58.5 4.5 0.00015 33.5 2.1 10 736-745 80-89 (133)
186 3gox_A Restriction endonucleas 58.5 5.9 0.0002 34.2 2.8 47 700-746 76-149 (200)
187 2drp_A Protein (tramtrack DNA- 58.5 1.6 5.6E-05 30.5 -0.5 42 699-747 10-53 (66)
188 2lri_C Autoimmune regulator; Z 58.3 7.3 0.00025 27.4 2.8 44 700-744 13-60 (66)
189 2epq_A POZ-, at HOOK-, and zin 57.4 5.3 0.00018 25.0 1.9 36 699-741 10-45 (45)
190 1fxk_A Prefoldin; archaeal pro 57.2 66 0.0023 25.0 10.0 27 195-221 75-101 (107)
191 1b8t_A Protein (CRP1); LIM dom 56.9 6.4 0.00022 35.1 3.0 33 700-732 35-68 (192)
192 1x4w_A Hypothetical protein FL 56.6 3.6 0.00012 28.8 0.9 44 699-746 15-62 (67)
193 2js4_A UPF0434 protein BB2007; 55.6 1.9 6.5E-05 30.8 -0.6 40 696-752 5-44 (70)
194 1wfl_A Zinc finger protein 216 54.9 4.4 0.00015 28.9 1.2 41 700-744 26-67 (74)
195 2m0e_A Zinc finger and BTB dom 54.8 6 0.00021 21.3 1.7 14 735-748 3-16 (29)
196 1nyp_A Pinch protein; LIM doma 54.7 5 0.00017 28.1 1.6 38 700-746 6-43 (66)
197 1llm_C Chimera of ZIF23-GCN4; 54.3 4.5 0.00015 30.3 1.3 13 699-711 3-15 (88)
198 2hf1_A Tetraacyldisaccharide-1 53.8 1.6 5.5E-05 30.9 -1.2 40 696-752 5-44 (68)
199 3cve_A Homer protein homolog 1 53.5 58 0.002 23.2 10.5 33 111-143 36-68 (72)
200 2i1j_A Moesin; FERM, coiled-co 53.3 25 0.00085 37.5 7.3 22 660-681 513-534 (575)
201 1x5w_A Zinc finger protein 64, 53.3 2.9 0.0001 29.6 0.1 43 698-747 8-50 (70)
202 3qh9_A Liprin-beta-2; coiled-c 52.5 63 0.0022 23.4 9.7 35 530-564 24-58 (81)
203 2lvu_A Zinc finger and BTB dom 57.4 3 0.0001 22.1 0.0 12 736-747 4-15 (26)
204 2dmd_A Zinc finger protein 64, 52.0 13 0.00044 28.1 3.7 14 734-747 64-77 (96)
205 1wfh_A Zinc finger (AN1-like) 51.9 8.1 0.00028 26.7 2.1 44 699-746 15-59 (64)
206 3mq9_A Bone marrow stromal ant 51.6 2.2E+02 0.0074 29.3 15.7 67 73-142 402-468 (471)
207 3l4q_C Phosphatidylinositol 3- 51.3 1.2E+02 0.0039 26.0 17.1 49 607-655 94-142 (170)
208 1ard_A Yeast transcription fac 51.2 6.7 0.00023 21.2 1.5 13 735-747 3-15 (29)
209 3a43_A HYPD, hydrogenase nicke 51.0 1.7 5.8E-05 36.3 -1.7 10 734-743 107-116 (139)
210 2d8x_A Protein pinch; LIM doma 50.7 4.7 0.00016 28.7 0.8 26 700-725 6-31 (70)
211 2ct1_A Transcriptional repress 50.6 2.9 9.9E-05 30.4 -0.3 43 699-747 15-58 (77)
212 1wig_A KIAA1808 protein; LIM d 50.2 6.4 0.00022 28.4 1.5 22 700-721 6-27 (73)
213 1f2i_G Fusion of N-terminal 17 50.1 6.4 0.00022 28.0 1.5 42 699-747 19-62 (73)
214 2jny_A Uncharacterized BCR; st 49.8 2.8 9.6E-05 29.5 -0.5 15 696-710 7-21 (67)
215 1wd2_A Ariadne-1 protein homol 49.7 3.9 0.00013 28.2 0.3 11 700-710 7-17 (60)
216 1x8y_A Lamin A/C; structural p 49.5 78 0.0027 23.5 9.1 13 660-672 65-77 (86)
217 1twf_L ABC10-alpha, DNA-direct 49.4 6.1 0.00021 28.1 1.2 11 733-743 44-54 (70)
218 1wg2_A Zinc finger (AN1-like) 49.3 6.7 0.00023 27.1 1.3 46 699-748 15-61 (64)
219 2d9h_A Zinc finger protein 692 49.3 5.6 0.00019 28.8 1.1 45 698-747 6-51 (78)
220 1b8t_A Protein (CRP1); LIM dom 49.0 13 0.00043 33.2 3.6 44 700-746 143-187 (192)
221 2cot_A Zinc finger protein 435 48.9 4.7 0.00016 29.2 0.7 43 698-747 17-59 (77)
222 1paa_A Yeast transcription fac 48.7 8.3 0.00028 21.0 1.6 13 735-747 3-15 (30)
223 2wbt_A B-129; zinc finger; 2.7 48.2 8.1 0.00028 31.5 2.1 40 699-747 74-113 (129)
224 2yqq_A Zinc finger HIT domain- 48.1 2.4 8.1E-05 28.6 -1.0 30 701-731 14-44 (56)
225 2dar_A PDZ and LIM domain prot 47.9 6.1 0.00021 29.9 1.2 38 700-746 26-63 (90)
226 1ubd_C Protein (YY1 zinc finge 47.5 19 0.00064 28.9 4.2 51 698-748 33-108 (124)
227 1lv3_A Hypothetical protein YA 46.7 3.8 0.00013 28.7 -0.2 12 734-745 9-20 (68)
228 1m1j_A Fibrinogen alpha subuni 46.6 2.4E+02 0.0081 28.3 14.0 42 20-61 55-96 (491)
229 2pk7_A Uncharacterized protein 46.5 2.8 9.7E-05 29.8 -0.9 40 696-752 5-44 (69)
230 1p7a_A BF3, BKLF, kruppel-like 46.1 8.4 0.00029 22.5 1.4 14 734-747 11-24 (37)
231 2uzg_A Ubiquitin carboxyl-term 46.0 7.8 0.00027 29.8 1.5 23 700-722 26-51 (97)
232 1znf_A 31ST zinc finger from X 45.9 7.7 0.00026 20.5 1.1 12 736-747 3-14 (27)
233 1klr_A Zinc finger Y-chromosom 45.8 10 0.00036 20.4 1.7 13 735-747 3-15 (30)
234 1wyh_A SLIM 2, skeletal muscle 45.7 7.5 0.00026 27.8 1.3 24 700-723 6-31 (72)
235 3qh9_A Liprin-beta-2; coiled-c 45.7 83 0.0028 22.8 10.2 48 89-136 26-73 (81)
236 1wfp_A Zinc finger (AN1-like) 45.1 12 0.00042 26.6 2.2 44 700-747 26-70 (74)
237 3nis_A E3 ubiquitin-protein li 45.0 5.1 0.00017 29.6 0.3 21 722-748 24-44 (82)
238 2k16_A Transcription initiatio 45.0 7.7 0.00026 28.2 1.2 49 699-747 18-72 (75)
239 1v6g_A Actin binding LIM prote 44.6 6 0.00021 29.2 0.6 25 700-724 16-40 (81)
240 2jp9_A Wilms tumor 1; DNA bind 44.1 17 0.00058 28.8 3.4 13 699-711 36-50 (119)
241 1x6a_A LIMK-2, LIM domain kina 44.1 7.9 0.00027 28.5 1.2 36 701-745 17-52 (81)
242 2kvh_A Zinc finger and BTB dom 43.9 6.1 0.00021 21.0 0.5 13 735-747 4-16 (27)
243 2cor_A Pinch protein; LIM doma 43.0 9 0.00031 28.1 1.4 26 700-725 16-41 (79)
244 1loi_A Cyclic 3',5'-AMP specif 43.0 1.8 6E-05 22.3 -1.7 11 720-730 6-16 (26)
245 2kvf_A Zinc finger and BTB dom 42.9 6.1 0.00021 21.2 0.4 13 735-747 4-16 (28)
246 1x79_B RAB GTPase binding effe 42.8 1.2E+02 0.0041 23.8 13.0 20 662-681 81-100 (112)
247 2k2d_A Ring finger and CHY zin 42.8 1.7 5.8E-05 31.9 -2.6 6 736-741 57-62 (79)
248 1wig_A KIAA1808 protein; LIM d 41.8 9.9 0.00034 27.3 1.4 33 700-732 32-66 (73)
249 2cur_A Skeletal muscle LIM-pro 41.4 7.1 0.00024 27.6 0.6 11 701-711 7-17 (69)
250 1a1h_A QGSR zinc finger peptid 41.2 10 0.00034 28.3 1.5 14 734-747 62-75 (90)
251 1rim_A E6APC2 peptide; E6-bind 41.2 13 0.00043 21.2 1.6 13 735-747 3-15 (33)
252 2d8z_A Four and A half LIM dom 40.5 12 0.00041 26.5 1.7 19 701-719 7-25 (70)
253 3ga8_A HTH-type transcriptiona 40.5 1.7 6E-05 32.0 -2.9 15 734-748 36-50 (78)
254 2m0f_A Zinc finger and BTB dom 40.2 7.2 0.00025 21.0 0.4 11 736-746 4-14 (29)
255 1gk4_A Vimentin; intermediate 40.1 1.1E+02 0.0038 22.6 11.5 12 537-548 38-49 (84)
256 1rik_A E6APC1 peptide; E6-bind 40.0 8.8 0.0003 20.7 0.7 12 736-747 4-15 (29)
257 2g45_A Ubiquitin carboxyl-term 39.4 9.7 0.00033 31.1 1.1 23 700-722 35-57 (129)
258 2kvg_A Zinc finger and BTB dom 39.4 6 0.00021 21.2 -0.1 13 735-747 4-16 (27)
259 2q6q_A Spindle POLE BODY compo 39.1 93 0.0032 21.4 8.8 43 503-545 16-58 (74)
260 2elr_A Zinc finger protein 406 39.1 13 0.00044 21.5 1.4 14 734-747 9-22 (36)
261 1x64_A Alpha-actinin-2 associa 38.3 11 0.00039 28.3 1.3 38 700-746 26-63 (89)
262 1m1j_A Fibrinogen alpha subuni 37.9 3.2E+02 0.011 27.3 15.2 15 705-719 292-307 (491)
263 2emh_A Zinc finger protein 484 37.7 18 0.00061 22.5 2.1 14 699-712 12-25 (46)
264 1f62_A Transcription factor WS 37.6 14 0.00049 24.2 1.6 43 701-743 2-50 (51)
265 2dlq_A GLI-kruppel family memb 37.5 18 0.0006 28.9 2.5 13 735-747 67-79 (124)
266 2l43_A N-teminal domain from h 37.4 11 0.00038 28.3 1.1 53 697-749 23-81 (88)
267 2epr_A POZ-, at HOOK-, and zin 37.4 11 0.00036 24.0 0.9 15 698-712 11-25 (48)
268 4g9i_A Hydrogenase maturation 37.4 15 0.0005 40.8 2.5 24 721-744 158-188 (772)
269 2cu8_A Cysteine-rich protein 2 37.3 10 0.00034 27.5 0.8 23 700-722 10-33 (76)
270 1a7i_A QCRP2 (LIM1); LIM domai 37.2 12 0.0004 27.6 1.2 41 700-743 35-76 (81)
271 3d00_A Tungsten formylmethanof 36.8 10 0.00034 33.6 0.9 25 698-727 162-186 (191)
272 2l4z_A DNA endonuclease RBBP8, 36.7 19 0.00063 29.2 2.5 27 700-726 62-89 (123)
273 2emp_A Zinc finger protein 347 36.6 18 0.00063 22.4 2.0 14 699-712 12-25 (46)
274 1yc5_A NAD-dependent deacetyla 36.5 15 0.0005 34.3 2.0 33 714-746 124-157 (246)
275 3ny3_A E3 ubiquitin-protein li 36.5 3.9 0.00013 29.6 -1.5 9 720-728 30-38 (75)
276 3ttc_A HYPF, transcriptional r 36.3 15 0.00052 39.5 2.4 24 721-744 69-99 (657)
277 2vrw_B P95VAV, VAV1, proto-onc 36.1 16 0.00053 37.2 2.4 33 697-729 355-392 (406)
278 2d9k_A FLN29 gene product; zin 36.1 3.6 0.00012 29.9 -1.8 17 733-749 42-58 (75)
279 2lvt_A Zinc finger and BTB dom 42.3 7.6 0.00026 21.0 0.0 12 736-747 4-15 (29)
280 2lvr_A Zinc finger and BTB dom 42.3 7.6 0.00026 21.1 0.0 11 736-746 5-15 (30)
281 2d8y_A Eplin protein; LIM doma 35.8 40 0.0014 25.3 4.1 30 700-729 43-73 (91)
282 2lv9_A Histone-lysine N-methyl 35.5 11 0.00037 29.1 0.8 42 700-742 29-75 (98)
283 2csh_A Zinc finger protein 297 35.4 26 0.00089 27.2 3.2 13 735-747 66-78 (110)
284 1tac_A TAT protein; transcript 35.3 23 0.0008 25.7 2.4 14 714-727 19-32 (86)
285 1zfo_A LAsp-1; LIM domain, zin 35.0 16 0.00054 21.0 1.3 14 734-747 3-16 (31)
286 2elp_A Zinc finger protein 406 34.9 11 0.00037 22.1 0.6 14 734-747 9-22 (37)
287 2i50_A Ubiquitin carboxyl-term 34.7 10 0.00035 30.8 0.6 23 700-722 29-65 (126)
288 1erd_A Pheromone ER-2; NMR {Eu 34.7 5.3 0.00018 22.8 -0.8 28 715-742 10-39 (40)
289 1x4l_A Skeletal muscle LIM-pro 34.6 15 0.00051 26.2 1.4 11 700-710 6-16 (72)
290 1nui_A DNA primase/helicase; z 34.5 10 0.00036 35.6 0.7 28 698-726 13-40 (255)
291 2eoo_A ZFP-95, zinc finger pro 34.3 19 0.00065 22.4 1.8 14 699-712 12-25 (46)
292 3h0g_L DNA-directed RNA polyme 34.2 18 0.00061 25.0 1.6 13 733-745 37-49 (63)
293 2iyb_E Testin, TESS, TES; LIM 34.1 11 0.00038 26.2 0.6 22 701-722 4-27 (65)
294 3vth_A Hydrogenase maturation 33.7 17 0.00057 40.1 2.2 24 721-744 163-193 (761)
295 2emy_A Zinc finger protein 268 33.6 19 0.00065 22.4 1.7 14 699-712 12-25 (46)
296 2k5r_A Uncharacterized protein 33.3 3.4 0.00012 31.6 -2.3 16 736-751 55-70 (97)
297 2apo_B Ribosome biogenesis pro 33.1 7.5 0.00026 26.5 -0.4 12 735-746 19-30 (60)
298 1vq8_1 50S ribosomal protein L 32.8 3.3 0.00011 27.6 -2.1 25 718-742 16-40 (57)
299 1co4_A AMT1, protein (activato 32.8 5.3 0.00018 24.8 -1.0 26 715-743 3-29 (42)
300 2jyp_A Aragonite protein AP7; 32.7 11 0.00039 21.0 0.3 24 700-723 10-33 (36)
301 4hc9_A Trans-acting T-cell-spe 32.7 45 0.0015 26.5 4.0 47 700-746 6-71 (115)
302 2cor_A Pinch protein; LIM doma 32.7 16 0.00055 26.7 1.3 30 700-729 42-71 (79)
303 2dlo_A Thyroid receptor-intera 32.7 12 0.00041 27.5 0.6 20 700-719 16-35 (81)
304 2dlk_A Novel protein; ZF-C2H2 32.6 21 0.00071 25.6 2.0 13 733-745 67-79 (79)
305 3u5n_A E3 ubiquitin-protein li 32.5 9.8 0.00033 34.4 0.1 45 699-744 7-55 (207)
306 1x68_A FHL5 protein; four-and- 32.3 14 0.00049 26.7 1.0 11 700-710 6-16 (76)
307 2ghf_A ZHX1, zinc fingers and 32.1 8.6 0.0003 30.0 -0.3 15 698-712 17-31 (102)
308 1x63_A Skeletal muscle LIM-pro 32.0 17 0.00057 26.7 1.3 39 700-747 16-56 (82)
309 1x4k_A Skeletal muscle LIM-pro 31.9 15 0.00052 26.1 1.0 21 701-721 7-29 (72)
310 1d4u_A Nucleotide excision rep 31.9 12 0.00041 29.5 0.5 13 701-713 7-19 (111)
311 2emm_A ZFP-95, zinc finger pro 31.8 16 0.00055 22.7 1.1 14 699-712 12-25 (46)
312 3f2b_A DNA-directed DNA polyme 31.5 8.8 0.0003 43.6 -0.4 16 731-746 524-539 (1041)
313 2elx_A Zinc finger protein 406 31.4 12 0.00042 21.3 0.4 13 735-747 8-20 (35)
314 2elt_A Zinc finger protein 406 31.3 13 0.00043 21.5 0.4 14 734-747 9-22 (36)
315 1x62_A C-terminal LIM domain p 31.3 13 0.00045 27.1 0.6 23 699-721 15-37 (79)
316 2elq_A Zinc finger protein 406 31.1 12 0.00042 21.6 0.4 14 734-747 9-22 (36)
317 3fyb_A Protein of unknown func 31.1 19 0.00063 27.2 1.3 12 720-731 41-52 (104)
318 2yso_A ZFP-95, zinc finger pro 31.0 21 0.00071 22.2 1.5 14 699-712 12-25 (46)
319 4esj_A Type-2 restriction enzy 30.8 4.1 0.00014 36.5 -2.5 9 700-708 35-43 (257)
320 2o35_A Hypothetical protein DU 30.8 19 0.00064 27.2 1.3 13 720-732 42-54 (105)
321 1iml_A CRIP, cysteine rich int 30.8 14 0.00047 26.7 0.7 37 701-746 2-39 (76)
322 1x3h_A Leupaxin; paxillin fami 30.8 14 0.00049 27.0 0.8 15 701-715 17-31 (80)
323 2elo_A Zinc finger protein 406 30.7 14 0.00047 21.5 0.6 14 734-747 9-22 (37)
324 1x6h_A Transcriptional repress 30.7 16 0.00054 26.8 1.0 13 699-711 15-27 (86)
325 1x4v_A Hypothetical protein LO 30.6 24 0.00081 24.5 1.7 39 700-742 13-54 (63)
326 2ej4_A Zinc finger protein ZIC 30.5 53 0.0018 24.4 4.2 13 735-747 63-75 (95)
327 2rpc_A Zinc finger protein ZIC 30.4 50 0.0017 27.6 4.4 48 700-747 63-135 (155)
328 1ma3_A SIR2-AF2, transcription 30.0 21 0.00072 33.3 2.0 32 714-745 126-159 (253)
329 2xnx_M M protein, M1-BC1; cell 30.0 1.5E+02 0.005 24.4 6.4 13 618-630 96-108 (146)
330 1dl6_A Transcription factor II 29.9 22 0.00076 24.1 1.5 30 696-727 8-38 (58)
331 2das_A Zinc finger MYM-type pr 29.9 38 0.0013 22.8 2.5 33 699-731 20-57 (62)
332 1t3j_A Mitofusin 1; coiled coi 29.9 1.8E+02 0.0062 22.0 7.3 35 339-373 54-88 (96)
333 2m0d_A Zinc finger and BTB dom 29.8 14 0.00049 19.8 0.5 11 736-746 5-15 (30)
334 2kfq_A FP1; protein, de novo p 29.8 18 0.00062 20.2 1.0 13 735-747 3-15 (32)
335 1fv5_A First zinc finger of U- 29.4 15 0.00051 22.0 0.5 14 734-747 8-21 (36)
336 3k1f_M Transcription initiatio 29.3 16 0.00056 31.0 0.9 13 695-707 17-29 (197)
337 3glr_A NAD-dependent deacetyla 29.3 23 0.00078 33.7 2.0 35 712-746 140-175 (285)
338 4gut_A Lysine-specific histone 29.3 21 0.00072 39.8 2.1 33 700-732 14-56 (776)
339 2e72_A POGO transposable eleme 29.1 20 0.00068 22.9 1.0 13 734-746 12-24 (49)
340 2aus_D NOP10, ribosome biogene 29.1 5.4 0.00018 27.2 -1.6 9 735-743 18-26 (60)
341 2elv_A Zinc finger protein 406 28.9 14 0.0005 21.3 0.4 14 734-747 9-22 (36)
342 2en6_A Zinc finger protein 268 28.8 26 0.00088 21.7 1.7 14 699-712 12-25 (46)
343 2eq0_A Zinc finger protein 347 28.6 17 0.00059 22.6 0.8 14 699-712 12-25 (46)
344 1go4_E MAD1 (mitotic arrest de 28.6 1.3E+02 0.0046 22.9 5.7 25 120-144 15-39 (100)
345 1e7l_A GP49, recombination end 28.6 17 0.00059 30.5 0.9 11 700-710 21-31 (157)
346 2cuq_A Four and A half LIM dom 28.5 18 0.00062 26.4 1.0 21 701-721 17-37 (80)
347 2dar_A PDZ and LIM domain prot 28.5 41 0.0014 25.2 3.1 32 700-731 52-84 (90)
348 1g47_A Pinch protein; LIM doma 28.4 13 0.00045 26.9 0.2 22 700-721 12-35 (77)
349 2em9_A Zinc finger protein 224 28.3 16 0.00054 22.7 0.6 14 699-712 12-25 (46)
350 2k48_A Nucleoprotein; viral pr 28.3 2E+02 0.0068 22.0 9.2 64 77-142 37-100 (107)
351 1j8f_A SIRT2, sirtuin 2, isofo 28.0 26 0.0009 34.0 2.3 30 717-746 167-197 (323)
352 2e6r_A Jumonji/ARID domain-con 27.7 5.3 0.00018 30.4 -2.1 43 700-742 17-65 (92)
353 1q14_A HST2 protein; histone d 27.7 23 0.00078 35.0 1.8 12 735-746 172-183 (361)
354 1srk_A Zinc finger protein ZFP 27.6 16 0.00055 20.9 0.5 14 734-747 7-20 (35)
355 3ask_A E3 ubiquitin-protein li 27.5 13 0.00043 33.7 -0.1 42 701-742 176-224 (226)
356 1gk4_A Vimentin; intermediate 27.4 1.9E+02 0.0064 21.3 11.9 10 662-671 65-74 (84)
357 2els_A Zinc finger protein 406 27.2 17 0.00059 20.9 0.5 13 735-747 10-22 (36)
358 2elm_A Zinc finger protein 406 27.1 14 0.00048 21.7 0.1 13 735-747 10-22 (37)
359 1wfe_A Riken cDNA 2310008M20 p 27.0 27 0.00093 26.0 1.7 37 699-739 25-64 (86)
360 1we9_A PHD finger family prote 26.8 12 0.00041 26.0 -0.3 47 698-744 5-59 (64)
361 2ysp_A Zinc finger protein 224 26.8 19 0.00064 22.4 0.7 14 699-712 12-25 (46)
362 2egq_A FHL1 protein; LIM domai 26.7 21 0.0007 25.8 1.0 39 700-747 16-59 (77)
363 2l4z_A DNA endonuclease RBBP8, 26.7 16 0.00054 29.6 0.4 10 736-745 90-99 (123)
364 2yte_A Zinc finger protein 473 26.1 27 0.00093 20.9 1.4 14 734-747 10-23 (42)
365 1x4s_A Protein FON, zinc finge 26.0 33 0.0011 23.3 1.8 31 699-729 11-45 (59)
366 1wii_A Hypothetical UPF0222 pr 25.7 4.5 0.00015 30.1 -2.7 14 695-708 19-32 (85)
367 2cr8_A MDM4 protein; ZF-ranbp 25.7 18 0.00061 23.4 0.4 24 698-727 10-33 (53)
368 2ytb_A Zinc finger protein 32; 25.6 28 0.00096 20.9 1.4 14 734-747 11-24 (42)
369 2yt5_A Metal-response element- 25.2 12 0.0004 26.3 -0.6 47 699-745 6-63 (66)
370 2enf_A Zinc finger protein 347 25.2 29 0.001 21.4 1.5 14 734-747 12-25 (46)
371 1q1a_A HST2 protein; ternary c 25.2 32 0.0011 32.9 2.3 33 714-746 139-175 (289)
372 2l3k_A Rhombotin-2, linker, LI 24.9 24 0.00083 28.5 1.2 21 701-721 10-32 (123)
373 3vhs_A ATPase wrnip1; zinc fin 24.9 18 0.00062 19.3 0.3 9 736-744 8-16 (29)
374 2en7_A Zinc finger protein 268 24.8 32 0.0011 20.9 1.5 14 734-747 12-25 (44)
375 2yti_A Zinc finger protein 347 24.7 32 0.0011 21.2 1.6 14 734-747 12-25 (46)
376 2eos_A B-cell lymphoma 6 prote 24.6 32 0.0011 20.6 1.5 14 734-747 11-24 (42)
377 1g6u_A Domain swapped dimer; d 24.5 1.2E+02 0.0041 18.1 5.0 27 420-446 15-41 (48)
378 2csz_A Synaptotagmin-like prot 24.3 25 0.00085 25.3 1.0 43 699-742 25-72 (76)
379 2dj7_A Actin-binding LIM prote 24.3 35 0.0012 24.9 1.9 23 699-721 15-38 (80)
380 1j2o_A FLIN2, fusion of rhombo 24.3 54 0.0018 25.9 3.2 33 700-732 31-66 (114)
381 1wvk_A AT2G23090/F21P24.15; st 24.2 15 0.00052 27.2 -0.1 11 736-746 47-57 (86)
382 2enh_A Zinc finger protein 28 24.0 34 0.0011 21.1 1.6 14 734-747 12-25 (46)
383 1pft_A TFIIB, PFTFIIBN; N-term 24.0 35 0.0012 22.1 1.7 9 699-707 5-13 (50)
384 1vq8_Z 50S ribosomal protein L 23.9 25 0.00085 26.0 1.0 11 698-708 26-36 (83)
385 1njq_A Superman protein; zinc- 23.8 20 0.00067 21.2 0.4 13 735-747 7-19 (39)
386 2c6a_A Ubiquitin-protein ligas 23.8 21 0.0007 22.7 0.4 20 700-725 14-33 (46)
387 2eq2_A Zinc finger protein 347 23.8 34 0.0012 21.1 1.6 14 734-747 12-25 (46)
388 2ely_A Zinc finger protein 224 23.7 36 0.0012 21.0 1.7 15 734-748 12-26 (46)
389 3mq9_A Bone marrow stromal ant 23.7 5.9E+02 0.02 25.9 15.8 68 74-144 396-463 (471)
390 2ehe_A Four and A half LIM dom 23.6 31 0.001 25.2 1.5 11 700-710 16-26 (82)
391 2kpi_A Uncharacterized protein 23.4 12 0.00042 25.2 -0.7 15 696-710 7-21 (56)
392 2eoh_A Zinc finger protein 28 23.3 35 0.0012 21.0 1.6 14 734-747 12-25 (46)
393 2ep1_A Zinc finger protein 484 23.1 36 0.0012 20.9 1.6 14 734-747 12-25 (46)
394 2em6_A Zinc finger protein 224 23.0 35 0.0012 21.0 1.5 14 734-747 12-25 (46)
395 3mi9_C Protein TAT; P-TEFB, HI 22.9 15 0.00052 26.7 -0.3 14 714-727 19-32 (86)
396 1wjp_A Zinc finger protein 295 22.8 13 0.00043 29.0 -0.9 13 699-711 16-28 (107)
397 4a18_A RPL37, ribosomal protei 22.8 7.4 0.00025 28.8 -2.0 26 718-743 15-40 (94)
398 2eon_A ZFP-95, zinc finger pro 22.8 35 0.0012 21.1 1.5 14 734-747 12-25 (46)
399 2eq1_A Zinc finger protein 347 22.7 36 0.0012 20.9 1.5 14 734-747 12-25 (46)
400 2yth_A Zinc finger protein 224 22.7 35 0.0012 21.0 1.5 14 734-747 12-25 (46)
401 3j20_Y 30S ribosomal protein S 22.3 24 0.00082 23.1 0.5 10 734-743 19-28 (50)
402 2ri7_A Nucleosome-remodeling f 22.2 18 0.00061 31.5 -0.1 45 698-743 7-59 (174)
403 1xwh_A Autoimmune regulator; P 22.2 19 0.00064 25.3 -0.0 51 698-749 7-61 (66)
404 2eou_A Zinc finger protein 473 22.1 38 0.0013 20.6 1.6 14 734-747 12-25 (44)
405 2emg_A Zinc finger protein 484 22.1 36 0.0012 21.0 1.4 14 734-747 12-25 (46)
406 1vk6_A NADH pyrophosphatase; 1 22.0 14 0.00048 34.9 -0.9 9 700-708 108-116 (269)
407 2eom_A ZFP-95, zinc finger pro 21.8 39 0.0013 20.8 1.6 14 734-747 12-25 (46)
408 2yrm_A B-cell lymphoma 6 prote 21.7 39 0.0013 20.5 1.5 14 734-747 10-23 (43)
409 2d8y_A Eplin protein; LIM doma 21.7 37 0.0013 25.5 1.6 23 699-721 15-38 (91)
410 2en9_A Zinc finger protein 28 21.7 38 0.0013 20.9 1.5 14 734-747 12-25 (46)
411 2ffw_A Midline-1; B-BOX, ring 21.6 39 0.0013 24.6 1.7 30 699-728 30-62 (78)
412 3ihp_A Ubiquitin carboxyl-term 21.4 28 0.00096 39.2 1.2 24 700-723 216-239 (854)
413 3iv1_A Tumor susceptibility ge 21.3 2.4E+02 0.0082 20.4 10.4 14 83-96 19-32 (78)
414 2emz_A ZFP-95, zinc finger pro 21.2 41 0.0014 20.7 1.6 14 734-747 12-25 (46)
415 2lcq_A Putative toxin VAPC6; P 21.0 24 0.00081 30.4 0.4 25 700-728 133-157 (165)
416 1wep_A PHF8; structural genomi 20.9 70 0.0024 23.2 2.9 48 700-748 13-68 (79)
417 2zkr_2 60S ribosomal protein L 20.8 13 0.00045 28.0 -1.0 26 718-743 15-40 (97)
418 2eov_A Zinc finger protein 484 20.7 41 0.0014 20.6 1.5 14 734-747 12-25 (46)
419 4etp_A Kinesin-like protein KA 20.6 1.7E+02 0.0059 29.3 6.7 33 639-671 26-58 (403)
420 2eoy_A Zinc finger protein 473 20.6 27 0.00094 21.6 0.6 14 734-747 12-25 (46)
421 1mm2_A MI2-beta; PHD, zinc fin 20.5 35 0.0012 23.4 1.1 46 698-744 8-57 (61)
422 3iz5_l 60S ribosomal protein L 20.5 13 0.00043 27.7 -1.2 34 719-753 16-49 (94)
423 2ida_A Hypothetical protein; z 20.4 31 0.0011 26.6 0.9 22 701-722 20-45 (102)
424 4etp_A Kinesin-like protein KA 20.4 2.9E+02 0.0098 27.7 8.3 56 490-545 3-58 (403)
425 2ytn_A Zinc finger protein 347 20.3 42 0.0014 20.6 1.4 14 733-746 11-24 (46)
426 3j21_e 50S ribosomal protein L 20.2 17 0.00059 24.7 -0.5 35 719-753 17-51 (62)
427 2yu5_A Zinc finger protein 473 20.2 28 0.00097 21.2 0.6 12 736-747 14-25 (44)
428 2eoq_A Zinc finger protein 224 20.1 45 0.0015 20.5 1.6 14 733-746 11-24 (46)
429 2epc_A Zinc finger protein 32; 20.1 27 0.00092 20.9 0.4 14 733-746 10-23 (42)
430 2l5u_A Chromodomain-helicase-D 20.1 41 0.0014 23.0 1.4 41 702-742 14-57 (61)
No 1
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.60 E-value=1.8e-15 Score=130.28 Aligned_cols=48 Identities=31% Similarity=0.682 Sum_probs=44.1
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
.+.|+||++.|.+||++||||+||..|+..|+. ....||.||.+|...
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK-RKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHH-cCCcCCCCCCcCCCC
Confidence 379999999999999999999999999999998 477899999999764
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.56 E-value=1.7e-15 Score=116.38 Aligned_cols=58 Identities=17% Similarity=0.318 Sum_probs=52.8
Q ss_pred cCCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 696 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
+...+.|+||++.|.+||+++|||+||..|+..|+..+...||.||.++...++.+++
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~ 62 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY 62 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECT
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCH
Confidence 4556899999999999999999999999999999986678899999999998888765
No 3
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.55 E-value=2e-15 Score=113.88 Aligned_cols=56 Identities=29% Similarity=0.736 Sum_probs=51.9
Q ss_pred Ccccccccccccccc-------eeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 698 AILKCGVCFDRPKEV-------VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~-------~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
....|+||++.|.++ ++++|||+||..|+..|+.. ...||.||.+|...+++++||
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~l 71 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 71 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeeccC
Confidence 457999999999887 89999999999999999985 578999999999999999997
No 4
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.53 E-value=3.5e-15 Score=126.24 Aligned_cols=55 Identities=22% Similarity=0.587 Sum_probs=49.1
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCC-CCCcccC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ-SDVRFVK 753 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~-~d~~~~~ 753 (754)
.+.|+||++.|.+|++++|||+||..|+..|+......||.||.+|.. .++.+++
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~ 107 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQ 107 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCH
T ss_pred CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCH
Confidence 389999999999999999999999999999998666689999999998 5666553
No 5
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.53 E-value=2.5e-15 Score=116.10 Aligned_cols=61 Identities=20% Similarity=0.535 Sum_probs=53.8
Q ss_pred hccCCcccccccccccccceeccCCCcccHHHHHHHhccC------CCCccccCcCcCCCCCcccCC
Q 004419 694 KDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIR------HRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 694 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~------~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
+.+...+.|+||++.|.+|++++|||+||..|+..|+... ...||.||.++...++.+++.
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~ 73 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQH 73 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSS
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHH
Confidence 3456678999999999999999999999999999998853 568999999999999888763
No 6
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.53 E-value=5.5e-15 Score=119.07 Aligned_cols=57 Identities=21% Similarity=0.659 Sum_probs=51.3
Q ss_pred Cccccccccccccccee-ccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 698 AILKCGVCFDRPKEVVI-TKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~-~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
..+.|+||++.|.+|+. ++|||+||..||..|+......||.||.+|...++.++++
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~ 78 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRW 78 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTT
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHH
Confidence 33999999999999999 9999999999999999975578999999999998877653
No 7
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.52 E-value=4.1e-15 Score=118.46 Aligned_cols=58 Identities=14% Similarity=-0.011 Sum_probs=52.5
Q ss_pred ccCCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 695 DCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 695 ~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
.+...+.||||++.|.+||+++|||+||..||..|+. ....||.||.++...++.+++
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~ 82 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVP 82 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECH
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECH
Confidence 3455689999999999999999999999999999998 478899999999999988774
No 8
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.52 E-value=3.1e-15 Score=110.31 Aligned_cols=55 Identities=29% Similarity=0.765 Sum_probs=51.1
Q ss_pred cccccccccccccc-------eeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 699 ILKCGVCFDRPKEV-------VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 699 ~~~C~iC~~~~~~~-------~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
.+.|+||++.|.++ +.++|||+||..|+..|+.. ...||.||.+|...++.++||
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeeeeC
Confidence 47899999999886 88999999999999999985 678999999999999999997
No 9
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.52 E-value=5.8e-15 Score=108.62 Aligned_cols=56 Identities=23% Similarity=0.564 Sum_probs=50.0
Q ss_pred ccccccccc-ccccc----eeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 699 ILKCGVCFD-RPKEV----VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 699 ~~~C~iC~~-~~~~~----~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
.+.|+||++ .|.+| ++++|||+||..|+..|+..+...||.||.++...++.+++|
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 63 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLF 63 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeecc
Confidence 478999999 88887 578999999999999997766678999999999999998875
No 10
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=7.5e-15 Score=108.37 Aligned_cols=55 Identities=25% Similarity=0.494 Sum_probs=49.5
Q ss_pred ccCCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCC
Q 004419 695 DCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 749 (754)
Q Consensus 695 ~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~ 749 (754)
.+...+.|+||++.|.+|+.++|||+||..|+..|+......||.||.++...++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 4456689999999999999999999999999999997567789999999998876
No 11
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.50 E-value=4.4e-15 Score=114.81 Aligned_cols=58 Identities=14% Similarity=-0.042 Sum_probs=52.1
Q ss_pred ccCCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 695 DCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 695 ~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
.+...+.||||++.|.+||+++|||+||..||..|+.. ...||.||.++...++.+++
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~ 67 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVP 67 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECH
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHH
Confidence 34556999999999999999999999999999999984 67899999999998888764
No 12
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.50 E-value=1.2e-14 Score=127.45 Aligned_cols=59 Identities=15% Similarity=0.052 Sum_probs=52.7
Q ss_pred ccCCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 695 DCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 695 ~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
.+...+.||||++.|.+||++||||+||..||..|+...+..||.||.+|...++.|++
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~ 160 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNL 160 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECH
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchH
Confidence 34556999999999999999999999999999999986555799999999999988875
No 13
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.6e-14 Score=109.46 Aligned_cols=57 Identities=30% Similarity=0.597 Sum_probs=50.1
Q ss_pred hccCCcccccccccccccceeccCCCcccHHHHHHHhcc--CCCCccccCcCcCCCCCc
Q 004419 694 KDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI--RHRKCPGCGTAFGQSDVR 750 (754)
Q Consensus 694 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~--~~~~Cp~C~~~~~~~d~~ 750 (754)
..+...+.|+||++.|.+|++++|||+||..|+..|+.. ....||.||.+|...+++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~r 73 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAIR 73 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccCC
Confidence 445667899999999999999999999999999999873 456899999999988874
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-14 Score=108.71 Aligned_cols=58 Identities=22% Similarity=0.598 Sum_probs=51.4
Q ss_pred hccCCcccccccccccccceec-cCCCcccHHHHHHHhccCCCCccccCcCcCCCCCccc
Q 004419 694 KDCKAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 752 (754)
Q Consensus 694 ~~~~~~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~ 752 (754)
..+...+.|+||++.|.+|+.+ +|||+||..|+..|+.. ...||.||..|...++..+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 4556678999999999999997 99999999999999975 6789999999999887654
No 15
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.48 E-value=1.5e-14 Score=115.28 Aligned_cols=59 Identities=24% Similarity=0.478 Sum_probs=49.5
Q ss_pred ccCCcccccccccccccceecc-CCCcccHHHHHHHhccC-CCCccccCcCc-CCCCCcccC
Q 004419 695 DCKAILKCGVCFDRPKEVVITK-CFHLFCNPCIQRNLEIR-HRKCPGCGTAF-GQSDVRFVK 753 (754)
Q Consensus 695 ~~~~~~~C~iC~~~~~~~~~~~-CgH~fC~~C~~~~~~~~-~~~Cp~C~~~~-~~~d~~~~~ 753 (754)
.+...+.|+||++.|.+|++++ |||+||..|+..|+... ...||.||.+| ...++.+++
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~ 70 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANK 70 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECH
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCH
Confidence 4556799999999999999999 99999999999998643 36899999998 455666554
No 16
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.47 E-value=1.9e-14 Score=114.09 Aligned_cols=58 Identities=12% Similarity=-0.023 Sum_probs=52.3
Q ss_pred ccCCcccccccccccccceeccCC-CcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 695 DCKAILKCGVCFDRPKEVVITKCF-HLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 695 ~~~~~~~C~iC~~~~~~~~~~~Cg-H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
.+...+.||||++.|++||+++|| |+||..||..|+.. ...||.||.++...++.+++
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~ 76 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNT 76 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECH
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcH
Confidence 344568999999999999999999 99999999999985 67899999999999988774
No 17
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=2.6e-14 Score=112.44 Aligned_cols=61 Identities=28% Similarity=0.586 Sum_probs=53.5
Q ss_pred hccCCcccccccccccccceeccCCCcccHHHHHHHhccC-----CCCccccCcCcCCCCCcccCC
Q 004419 694 KDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIR-----HRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 694 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~-----~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
..+...+.|+||++.|.+|++++|||+||..|+..|+... ...||.||.++...++.+++.
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLH 79 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSC
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHH
Confidence 3455668999999999999999999999999999999862 678999999999999888763
No 18
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.46 E-value=1.6e-14 Score=125.36 Aligned_cols=54 Identities=30% Similarity=0.664 Sum_probs=48.8
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC-CCcccC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS-DVRFVK 753 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~-d~~~~~ 753 (754)
+.|+||++.|.+||+++|||+||..|+..|+......||.||.+|... ++.+++
T Consensus 79 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~ 133 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNE 133 (150)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCH
T ss_pred CEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCH
Confidence 899999999999999999999999999999997666899999999988 565553
No 19
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.9e-14 Score=112.17 Aligned_cols=61 Identities=21% Similarity=0.579 Sum_probs=53.8
Q ss_pred hccCCcccccccccccccceeccCCCcccHHHHHHHhcc-----CCCCccccCcCcCCCCCcccCC
Q 004419 694 KDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI-----RHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 694 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~-----~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
..+...+.|+||++.|.+|++++|||+||..|+..|+.. +...||.||..|...++.++|.
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRH 79 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHH
Confidence 345567899999999999999999999999999999875 3678999999999999988763
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.46 E-value=3e-14 Score=107.62 Aligned_cols=55 Identities=25% Similarity=0.536 Sum_probs=47.4
Q ss_pred hccCCcccccccccccccceecc-CCCcccHHHHHHHhccCC-CCccccCcCcCCCC
Q 004419 694 KDCKAILKCGVCFDRPKEVVITK-CFHLFCNPCIQRNLEIRH-RKCPGCGTAFGQSD 748 (754)
Q Consensus 694 ~~~~~~~~C~iC~~~~~~~~~~~-CgH~fC~~C~~~~~~~~~-~~Cp~C~~~~~~~d 748 (754)
..+...+.|+||++.|.+|++++ |||+||..|+..|+.... ..||.||.++...|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 34556689999999999999999 999999999999998533 68999999976655
No 21
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.44 E-value=4.1e-14 Score=117.74 Aligned_cols=58 Identities=31% Similarity=0.705 Sum_probs=50.5
Q ss_pred cCCcccccccccccccceeccCCCcccHHHHHHHhccCC--CCccccCcCcCCCCCcccC
Q 004419 696 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRH--RKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~--~~Cp~C~~~~~~~d~~~~~ 753 (754)
+...+.|+||++.|.+|++++|||+||..|+..|+.... ..||.||.++...++.+++
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 77 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCC
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccH
Confidence 334489999999999999999999999999999998532 4799999999999887764
No 22
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.44 E-value=2.1e-14 Score=115.95 Aligned_cols=54 Identities=30% Similarity=0.837 Sum_probs=49.0
Q ss_pred cccccccccccccceec-cCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 699 ILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
.+.|+||++.|.+|+.+ +|||+||..|+..|+.. ...||.||.+|...++.+++
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~ 76 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNR 76 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECH
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCH
Confidence 38999999999999998 89999999999999984 67899999999988887764
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=6.6e-14 Score=110.73 Aligned_cols=58 Identities=21% Similarity=0.574 Sum_probs=50.2
Q ss_pred ccCCccccccccccccc----ceeccCCCcccHHHHHHHhccC--CCCccccCcCcCCCCCccc
Q 004419 695 DCKAILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIR--HRKCPGCGTAFGQSDVRFV 752 (754)
Q Consensus 695 ~~~~~~~C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~~~~--~~~Cp~C~~~~~~~d~~~~ 752 (754)
.+...+.|+||++.|.+ |++++|||+||..|+..|+... ...||.||..+...++..+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQL 74 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTS
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHH
Confidence 45566899999999998 9999999999999999999864 4689999999998876543
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=6.9e-14 Score=108.08 Aligned_cols=49 Identities=27% Similarity=0.644 Sum_probs=44.6
Q ss_pred cCCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 696 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
....+.|+||++.|.+|++++|||+||..|+..|+.. ...||.||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 4456899999999999999999999999999999984 678999999986
No 25
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.39 E-value=6.8e-14 Score=116.65 Aligned_cols=55 Identities=27% Similarity=0.649 Sum_probs=49.2
Q ss_pred cCCcccccccccccccceec-cCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 696 CKAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
+...+.|+||++.|.+||++ +|||+||..|+..|+. ..||.||.+|...++.+++
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~ 74 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINR 74 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccH
Confidence 34459999999999999999 9999999999999976 6799999999988888765
No 26
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.39 E-value=2.4e-13 Score=102.27 Aligned_cols=56 Identities=16% Similarity=0.484 Sum_probs=46.7
Q ss_pred cCCcccccccccccc--cceecc--CCCcccHHHHHHHhccCCCCccccCcCcCCCCCcc
Q 004419 696 CKAILKCGVCFDRPK--EVVITK--CFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRF 751 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~--~~~~~~--CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~ 751 (754)
+...+.||||++.|. +++++| |||.||..|+..++......||.||.+|...++..
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 456689999999984 456665 99999999999998766778999999999887643
No 27
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.39 E-value=1.1e-13 Score=113.79 Aligned_cols=51 Identities=29% Similarity=0.658 Sum_probs=46.1
Q ss_pred cCCcccccccccccccceec-cCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 696 CKAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
+...+.|+||++.|.+|+++ +|||+||..|+..|+.. ...||.||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCcccccc
Confidence 44558999999999999998 99999999999999985 58899999999876
No 28
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.39 E-value=6.9e-14 Score=105.19 Aligned_cols=51 Identities=29% Similarity=0.629 Sum_probs=44.6
Q ss_pred CCcccccccccccccceeccCCCc-ccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 697 KAILKCGVCFDRPKEVVITKCFHL-FCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 697 ~~~~~C~iC~~~~~~~~~~~CgH~-fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
...+.|+||++.+.+++++||||+ ||..|+..| ..||.||.+|.. +.++||
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~--~~~i~~ 73 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF--KQKILM 73 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE--EEECBC
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC--cEEEee
Confidence 344899999999999999999999 999999976 679999999986 566665
No 29
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=7.2e-14 Score=104.72 Aligned_cols=52 Identities=19% Similarity=0.564 Sum_probs=46.4
Q ss_pred CcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCc
Q 004419 698 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVR 750 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~ 750 (754)
..+.|+||++.|.+++.++|||+||..|+..|+.. ...||.||..|...++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPEDFLD 65 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHHHS
T ss_pred CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhhcc
Confidence 34789999999999999999999999999999884 57899999999876654
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.4e-13 Score=99.28 Aligned_cols=47 Identities=32% Similarity=0.642 Sum_probs=41.8
Q ss_pred hccCCcccccccccccccceeccCCCcccHHHHHHHhcc--CCCCcccc
Q 004419 694 KDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI--RHRKCPGC 740 (754)
Q Consensus 694 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~--~~~~Cp~C 740 (754)
+.+...+.|+||++.|.+|++++|||+||..|+..|+.. +...||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 455667899999999999999999999999999999974 45689998
No 31
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.36 E-value=1.6e-13 Score=114.45 Aligned_cols=54 Identities=31% Similarity=0.629 Sum_probs=49.0
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCccc
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 752 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~ 752 (754)
.+.|+||++.|.+|+.++|||+||..|+..|+......||.||.+|...++.++
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc
Confidence 389999999999999999999999999999998767789999999998886543
No 32
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.8e-13 Score=108.40 Aligned_cols=57 Identities=26% Similarity=0.446 Sum_probs=49.0
Q ss_pred CCcccccccccccccceecc-CCCcccHHHHHHHhccC-----CCCccc--cCcC-cCCCCCcccC
Q 004419 697 KAILKCGVCFDRPKEVVITK-CFHLFCNPCIQRNLEIR-----HRKCPG--CGTA-FGQSDVRFVK 753 (754)
Q Consensus 697 ~~~~~C~iC~~~~~~~~~~~-CgH~fC~~C~~~~~~~~-----~~~Cp~--C~~~-~~~~d~~~~~ 753 (754)
...+.||||++.|.+||+++ |||+||..||..|+... ...||. |+.. +...++.+++
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~ 70 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDE 70 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECH
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCH
Confidence 45689999999999999996 99999999999999853 358999 8877 8878887764
No 33
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.36 E-value=1.6e-13 Score=136.17 Aligned_cols=56 Identities=16% Similarity=0.055 Sum_probs=50.8
Q ss_pred CcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 698 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
..+.||||++.|.+||++||||+||..||..|+......||.||.+++..++.+++
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~ 262 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNL 262 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECH
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccH
Confidence 45899999999999999999999999999999986566699999999988888764
No 34
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.2e-13 Score=102.94 Aligned_cols=51 Identities=29% Similarity=0.623 Sum_probs=44.0
Q ss_pred CCcccccccccccccceeccCCCc-ccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 697 KAILKCGVCFDRPKEVVITKCFHL-FCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 697 ~~~~~C~iC~~~~~~~~~~~CgH~-fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
...+.|+||++.|.+++++||||+ ||..|+.. ...||.||.+|.. ..++||
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~--~~~i~~ 74 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF--KQKIFM 74 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC--CCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC--cEEEec
Confidence 334799999999999999999999 99999964 4679999999977 567775
No 35
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.35 E-value=1.7e-13 Score=114.48 Aligned_cols=59 Identities=24% Similarity=0.465 Sum_probs=51.7
Q ss_pred hccCCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCccc
Q 004419 694 KDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 752 (754)
Q Consensus 694 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~ 752 (754)
..+...+.|+||++.|.+|+.++|||+||..|+..|+......||.||.+|...++.+.
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 71 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccC
Confidence 34556689999999999999999999999999999998766689999999998876554
No 36
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.8e-13 Score=102.49 Aligned_cols=58 Identities=29% Similarity=0.658 Sum_probs=50.0
Q ss_pred hccCCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 694 KDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 694 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
..+.....|+||++.|.+ ++++|||+||..|+..|+. ....||.||.+|...+...+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~~ 67 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGANESSGP 67 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCCCCCCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCCccccC
Confidence 345566899999999999 9999999999999999988 577899999999987765554
No 37
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.32 E-value=2.7e-13 Score=121.14 Aligned_cols=51 Identities=31% Similarity=0.780 Sum_probs=45.5
Q ss_pred CCcccccccccccccceec-cCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 697 KAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 697 ~~~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
...+.|+||++.|.+|+.+ +|||+||..|+..|+..+...||.||.++...
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 3447999999999999998 99999999999999997678899999999653
No 38
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.32 E-value=4.1e-13 Score=101.80 Aligned_cols=59 Identities=25% Similarity=0.626 Sum_probs=47.2
Q ss_pred HHHHHhccCCcccccccccccccceeccCCCc-ccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 689 LQDEIKDCKAILKCGVCFDRPKEVVITKCFHL-FCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 689 l~~e~~~~~~~~~C~iC~~~~~~~~~~~CgH~-fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
++++++.+.....|+||++.+.+++++||||. ||..|+..+ ..||.||.+|.. +.++|+
T Consensus 8 l~~~~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~--~~~i~~ 67 (79)
T 2yho_A 8 LQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH--VQHVYL 67 (79)
T ss_dssp HHHHHHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE--EEECBC
T ss_pred HHHHHHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC--eEEEEe
Confidence 34444445555899999999999999999999 999999965 479999999987 455553
No 39
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.32 E-value=3.5e-13 Score=94.93 Aligned_cols=47 Identities=23% Similarity=0.678 Sum_probs=41.5
Q ss_pred CcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 698 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
..+.|+||++.|.+|++++|||+||..|+..+ ...||.||..+...+
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCS
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecCC
Confidence 45899999999999999999999999999873 557999999988654
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=8.6e-13 Score=94.65 Aligned_cols=47 Identities=40% Similarity=0.803 Sum_probs=41.1
Q ss_pred hccCCcccccccccccccceeccCCCcccHHHHHHHhcc--CCCCcccc
Q 004419 694 KDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI--RHRKCPGC 740 (754)
Q Consensus 694 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~--~~~~Cp~C 740 (754)
+.+...+.|+||++.|.+|++++|||+||..|+..|+.. +...||.|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345566899999999999999999999999999999654 56789998
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.31 E-value=3.8e-13 Score=112.03 Aligned_cols=48 Identities=31% Similarity=0.715 Sum_probs=44.4
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
.+.|+||++.|.+|++++|||+||..|+..|+......||.||..|..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 379999999999999999999999999999998767889999999874
No 42
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.31 E-value=9.6e-13 Score=100.92 Aligned_cols=56 Identities=29% Similarity=0.487 Sum_probs=47.1
Q ss_pred cCCcccccccccccccc---eeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCccc
Q 004419 696 CKAILKCGVCFDRPKEV---VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 752 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~~---~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~ 752 (754)
......|+||++.|..+ ++++|||+||..|+..|+.. ...||.||..|...++.++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 34558999999999754 56799999999999999984 5789999999999887653
No 43
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=6.4e-13 Score=99.47 Aligned_cols=50 Identities=30% Similarity=0.800 Sum_probs=44.2
Q ss_pred cCCcccccccccccccc-------eeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 696 CKAILKCGVCFDRPKEV-------VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~~-------~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
+.....|+||++.|.++ ++++|||+||..|+..|+.. ...||.||.+|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 34558999999999887 89999999999999999985 6789999999875
No 44
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.30 E-value=2.2e-07 Score=92.07 Aligned_cols=61 Identities=18% Similarity=0.265 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 612 ETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNN 672 (754)
Q Consensus 612 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~ 672 (754)
..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+..
T Consensus 219 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (284)
T 1c1g_A 219 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALN 279 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333334444444444444444444444444444444433
No 45
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.26 E-value=1.4e-12 Score=111.71 Aligned_cols=52 Identities=19% Similarity=0.426 Sum_probs=46.4
Q ss_pred hccCCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 694 KDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 694 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
..+...+.|+||++.|.+||.++|||+||..||..|+......||.||.++.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4566779999999999999999999999999999999866668999999754
No 46
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.25 E-value=2.5e-12 Score=91.02 Aligned_cols=47 Identities=21% Similarity=0.526 Sum_probs=41.5
Q ss_pred ccccccccccccc----ceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 699 ILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 699 ~~~C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
...|+||++.|.+ +++++|||+||..|+..|+... ..||.||.+|..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~g 55 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSSG 55 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCCC
Confidence 4689999999966 8889999999999999999864 789999998863
No 47
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.25 E-value=3.3e-12 Score=100.69 Aligned_cols=48 Identities=25% Similarity=0.602 Sum_probs=42.6
Q ss_pred Cccccccccccccc---ceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 698 AILKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 698 ~~~~C~iC~~~~~~---~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
....|+||++.|.. ++.++|||.||..|+..|+.. ...||.||..|..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 45789999999987 888999999999999999984 6789999999875
No 48
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.24 E-value=2.2e-12 Score=95.90 Aligned_cols=47 Identities=28% Similarity=0.788 Sum_probs=41.9
Q ss_pred cccccccccccccc-eeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 699 ILKCGVCFDRPKEV-VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 699 ~~~C~iC~~~~~~~-~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
...|+||++.|.++ +.++|||+||..|+..|+.. ...||.||.+|..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 46899999999985 88899999999999999984 5789999999874
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.24 E-value=1.6e-12 Score=94.21 Aligned_cols=53 Identities=30% Similarity=0.619 Sum_probs=46.4
Q ss_pred cccccccccccccceec--cCCCc-ccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 699 ILKCGVCFDRPKEVVIT--KCFHL-FCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~--~CgH~-fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
...|+||++.+.+++++ ||||. ||..|+..|.. ....||.||.+|.. +.++|+
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~--~i~i~~ 63 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQM--IVLTYF 63 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCCE--EEEEEC
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchhc--eEeeec
Confidence 36899999999999987 99999 79999999987 46689999999964 777775
No 50
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.24 E-value=3.4e-12 Score=90.19 Aligned_cols=48 Identities=25% Similarity=0.543 Sum_probs=41.6
Q ss_pred CCccccccccccccc---ceecc-CCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 697 KAILKCGVCFDRPKE---VVITK-CFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 697 ~~~~~C~iC~~~~~~---~~~~~-CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
.....|+||++.|.+ ++.++ |||.||..|+..|+.. ...||.||.+|.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 445789999999987 77787 9999999999999985 678999998874
No 51
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.23 E-value=1.4e-12 Score=119.69 Aligned_cols=59 Identities=27% Similarity=0.414 Sum_probs=50.9
Q ss_pred ccCCcccccccccccccceec-cCCCcccHHHHHHHhccC-CCCccc--cCcCcCCCCCcccC
Q 004419 695 DCKAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIR-HRKCPG--CGTAFGQSDVRFVK 753 (754)
Q Consensus 695 ~~~~~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~-~~~Cp~--C~~~~~~~d~~~~~ 753 (754)
.....+.||||+..|.+||++ .|||+||..||..|+... ...||. |+..|...++.+++
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~ 239 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDP 239 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCH
Confidence 445668999999999999985 999999999999999753 457999 99999998887653
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.23 E-value=1.6e-12 Score=93.87 Aligned_cols=53 Identities=30% Similarity=0.536 Sum_probs=45.7
Q ss_pred cccccccccccccceec--cCCCc-ccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 699 ILKCGVCFDRPKEVVIT--KCFHL-FCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~--~CgH~-fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
...|+||++.+.+++++ ||||. ||..|+..+... ..+||.||.++.. +.++|+
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~--~i~i~~ 62 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL--VIKVFI 62 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE--EEEEEE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc--eEEEec
Confidence 36899999999999888 99998 999999999874 5789999999965 677664
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.23 E-value=2.8e-12 Score=110.77 Aligned_cols=56 Identities=29% Similarity=0.736 Sum_probs=50.9
Q ss_pred Ccccccccccccccc-------eeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 698 AILKCGVCFDRPKEV-------VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~-------~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
..+.|+||++.|.+| ++++|||+||..|+..|+.. ...||.||..|...++.++|+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l~i 68 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 68 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEECBC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccccc
Confidence 458999999999988 99999999999999999984 668999999999999988875
No 54
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.22 E-value=2.3e-12 Score=91.45 Aligned_cols=54 Identities=11% Similarity=0.217 Sum_probs=50.1
Q ss_pred ccccccccccccceec-cCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 700 LKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
+.||||++.|.+||++ +|||+||..||..|+.. ..+||.+|.+++..|+.++++
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECCC
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECcc
Confidence 7899999999999999 99999999999999985 557999999999999998874
No 55
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=5.5e-12 Score=93.99 Aligned_cols=50 Identities=28% Similarity=0.644 Sum_probs=42.5
Q ss_pred CCcccccccccccc---cceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 697 KAILKCGVCFDRPK---EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 697 ~~~~~C~iC~~~~~---~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
.....|+||++.|. .++.++|||+||..|+..|+.. ...||.||..|...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 34578999999884 4688899999999999999985 56799999998764
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.22 E-value=5e-12 Score=124.85 Aligned_cols=56 Identities=25% Similarity=0.567 Sum_probs=48.7
Q ss_pred cCCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcc
Q 004419 696 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRF 751 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~ 751 (754)
......|+||++.+.+|+++||||+||..|+..|...+...||.||.++...++..
T Consensus 329 ~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp TTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred cCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeEe
Confidence 34457999999999999999999999999999998856778999999998865443
No 57
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=4.6e-12 Score=96.09 Aligned_cols=49 Identities=29% Similarity=0.567 Sum_probs=42.8
Q ss_pred Ccccccccccccccc---eeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 698 AILKCGVCFDRPKEV---VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~---~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
....|+||++.|..+ +.++|||+||..|+..|+.. ...||.||..|...
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence 346899999999875 77899999999999999985 67899999998764
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.18 E-value=5.4e-12 Score=113.42 Aligned_cols=59 Identities=24% Similarity=0.465 Sum_probs=51.9
Q ss_pred hccCCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCccc
Q 004419 694 KDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 752 (754)
Q Consensus 694 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~ 752 (754)
..+...+.|+||++.|.+||.++|||+||..|+..|+.....+||.||.++...++.+.
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 71 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhh
Confidence 45566799999999999999999999999999999998666689999999998876553
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.17 E-value=4.7e-12 Score=109.39 Aligned_cols=56 Identities=29% Similarity=0.736 Sum_probs=51.2
Q ss_pred Ccccccccccccccc-------eeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 698 AILKCGVCFDRPKEV-------VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~-------~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
....|+||++.|.++ +.++|||+||..|+..|+.. ...||.||.++..++++++||
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceeeeC
Confidence 457899999999876 88999999999999999985 678999999999999999997
No 60
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=9.7e-12 Score=94.14 Aligned_cols=52 Identities=29% Similarity=0.556 Sum_probs=42.9
Q ss_pred ccCCcccccccccccccce---eccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 695 DCKAILKCGVCFDRPKEVV---ITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 695 ~~~~~~~C~iC~~~~~~~~---~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
.+.....|+||++.|..+. +++|||+||..|+..|+.. ...||.||.+|...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 3445679999999997643 4499999999999999985 56899999998764
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.4e-11 Score=90.09 Aligned_cols=48 Identities=23% Similarity=0.581 Sum_probs=41.9
Q ss_pred cccccccccccccceeccCCCc-ccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHL-FCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~-fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
...|+||++.+.+++++||||+ ||..|+.. ...||+||.+|.. +.++|
T Consensus 15 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~--~~~i~ 63 (68)
T 2ea5_A 15 SKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE--SFALS 63 (68)
T ss_dssp SSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC--EECCC
T ss_pred CCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc--eEEee
Confidence 4789999999999999999999 99999994 4679999999987 45555
No 62
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.12 E-value=2.4e-11 Score=101.02 Aligned_cols=48 Identities=27% Similarity=0.629 Sum_probs=40.5
Q ss_pred ccccccccccccce------------------eccCCCcccHHHHHHHhcc----CCCCccccCcCcCCC
Q 004419 700 LKCGVCFDRPKEVV------------------ITKCFHLFCNPCIQRNLEI----RHRKCPGCGTAFGQS 747 (754)
Q Consensus 700 ~~C~iC~~~~~~~~------------------~~~CgH~fC~~C~~~~~~~----~~~~Cp~C~~~~~~~ 747 (754)
..|+||++.|..++ +++|||.||..||..|+.. ....||.||..|...
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 58999999997654 7899999999999999952 456899999998753
No 63
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.06 E-value=2.4e-11 Score=120.13 Aligned_cols=59 Identities=29% Similarity=0.617 Sum_probs=49.0
Q ss_pred HHHHHhccCCcccccccccccccceeccCCCc-ccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 689 LQDEIKDCKAILKCGVCFDRPKEVVITKCFHL-FCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 689 l~~e~~~~~~~~~C~iC~~~~~~~~~~~CgH~-fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
+.+.+..+...+.|+||++.|.+|+++||||. ||..|+..+ ..||.||.+|.. +.++|+
T Consensus 285 ~~~~~~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~--~~~i~~ 344 (345)
T 3t6p_A 285 LEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG--TVRTFL 344 (345)
T ss_dssp HHHHHHHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE--EEECC-
T ss_pred HHHHHHhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC--eEEeec
Confidence 34455556666999999999999999999999 999999965 679999999986 566664
No 64
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=5.8e-11 Score=90.94 Aligned_cols=49 Identities=24% Similarity=0.574 Sum_probs=40.2
Q ss_pred cccccccccccc--------------ceec-cCCCcccHHHHHHHhccCCCCccccCcCcCCCCC
Q 004419 700 LKCGVCFDRPKE--------------VVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 749 (754)
Q Consensus 700 ~~C~iC~~~~~~--------------~~~~-~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~ 749 (754)
..|+||++.|.+ ++.+ +|||.||..||..|+.. ...||.||.+|...++
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQRI 79 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEEEE
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchhhc
Confidence 579999888865 4455 59999999999999985 5689999999876554
No 65
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.95 E-value=2.7e-10 Score=91.22 Aligned_cols=47 Identities=23% Similarity=0.480 Sum_probs=40.2
Q ss_pred ccccccccccccc------------------eeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 700 LKCGVCFDRPKEV------------------VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 700 ~~C~iC~~~~~~~------------------~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
..|+||++.|..+ +.++|||.||..||..|+.. ...||.||..|...
T Consensus 38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEFQ 102 (106)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCCEE
T ss_pred CCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcceee
Confidence 5799999998765 44799999999999999985 67899999998643
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=3.2e-10 Score=90.01 Aligned_cols=53 Identities=21% Similarity=0.654 Sum_probs=42.2
Q ss_pred Ccccccccccccccceec---cCCCcccHHHHHHHhccC-------CCCccc--cCcC--cCCCCCc
Q 004419 698 AILKCGVCFDRPKEVVIT---KCFHLFCNPCIQRNLEIR-------HRKCPG--CGTA--FGQSDVR 750 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~---~CgH~fC~~C~~~~~~~~-------~~~Cp~--C~~~--~~~~d~~ 750 (754)
..+.|+||++.|..++.+ +|||.||..|+..++... ...||. |+.. +...++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~ 70 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE 70 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH
Confidence 357999999999887654 799999999999998741 347999 9998 6655443
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.83 E-value=3.8e-10 Score=91.38 Aligned_cols=48 Identities=23% Similarity=0.473 Sum_probs=0.0
Q ss_pred ccccccccccccce------------------eccCCCcccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 700 LKCGVCFDRPKEVV------------------ITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 700 ~~C~iC~~~~~~~~------------------~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
-.|+||++.|.+++ .++|||.||..||..|+.. ...||.||.+|....
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~~~k 114 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEFQK 114 (117)
T ss_dssp -------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeeeeec
Confidence 48999999987632 2489999999999999985 678999999986543
No 68
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.76 E-value=1.2e-08 Score=119.93 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 004419 659 ERKKLEEELMEVNNKVAELTSET 681 (754)
Q Consensus 659 ~~~~~~~e~~~~~~~l~~l~~~~ 681 (754)
....+..++..+...+..+...+
T Consensus 1145 q~~~L~~ele~L~~~Ieel~~vn 1167 (1184)
T 1i84_S 1145 QKRDLSEELEALKTELEDTLDTT 1167 (1184)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Confidence 33444444555555555544443
No 69
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.69 E-value=1.9e-06 Score=82.21 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=8.2
Q ss_pred CCCccccCcCcC
Q 004419 734 HRKCPGCGTAFG 745 (754)
Q Consensus 734 ~~~Cp~C~~~~~ 745 (754)
...||+||.-+-
T Consensus 222 Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 222 MITCPYCGRILY 233 (256)
T ss_dssp CEECTTTCCEEE
T ss_pred EEECCCCCeeEE
Confidence 457999985443
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.63 E-value=1.6e-08 Score=76.32 Aligned_cols=47 Identities=26% Similarity=0.543 Sum_probs=40.7
Q ss_pred cccccccccccc-ceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~-~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
.-|++|.-++.. ...+||+|.||.+|+..|...+...||.|+.+|..
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred eecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 469999988876 55669999999999999998788899999998864
No 71
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=5.4e-08 Score=73.25 Aligned_cols=50 Identities=24% Similarity=0.497 Sum_probs=42.0
Q ss_pred cccccccccccc--cceeccCC-----CcccHHHHHHHhccCC-CCccccCcCcCCCC
Q 004419 699 ILKCGVCFDRPK--EVVITKCF-----HLFCNPCIQRNLEIRH-RKCPGCGTAFGQSD 748 (754)
Q Consensus 699 ~~~C~iC~~~~~--~~~~~~Cg-----H~fC~~C~~~~~~~~~-~~Cp~C~~~~~~~d 748 (754)
...|.||++.|. +++++||+ |.|...|+..|+.... ..||.||..|....
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 368999998884 57889996 9999999999998643 68999999997653
No 72
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.32 E-value=7e-05 Score=71.41 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=15.4
Q ss_pred cccccccccccccee---ccCCC-cccHHHHHHH
Q 004419 700 LKCGVCFDRPKEVVI---TKCFH-LFCNPCIQRN 729 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~---~~CgH-~fC~~C~~~~ 729 (754)
..|..|+-....... ..... +||..|..=.
T Consensus 199 ~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL 232 (256)
T 3na7_A 199 QACGGCFIRLNDKIYTEVLTSGDMITCPYCGRIL 232 (256)
T ss_dssp TBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEE
T ss_pred CccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeE
Confidence 479999655432111 12222 5677776533
No 73
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.16 E-value=1.7e-06 Score=63.34 Aligned_cols=48 Identities=17% Similarity=0.477 Sum_probs=39.4
Q ss_pred ccccccccccccceec-cCCCcccHHHHHHHhccC-CCCccccCcCcCCC
Q 004419 700 LKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIR-HRKCPGCGTAFGQS 747 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~-~~~Cp~C~~~~~~~ 747 (754)
..|.||...|...... .|||.|=..|+..|+..+ ...||.|+..+...
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 5899999998754333 899999999999999864 26899999887643
No 74
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.71 E-value=2.9e-05 Score=54.48 Aligned_cols=48 Identities=21% Similarity=0.494 Sum_probs=39.5
Q ss_pred cccccccccccccceeccCC--C---cccHHHHHHHhcc-CCCCccccCcCcCC
Q 004419 699 ILKCGVCFDRPKEVVITKCF--H---LFCNPCIQRNLEI-RHRKCPGCGTAFGQ 746 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~Cg--H---~fC~~C~~~~~~~-~~~~Cp~C~~~~~~ 746 (754)
...|.||+....++.++||. | .|=..|+..|+.. +...||.|+.+|..
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 46899998887777788965 4 7899999999975 46789999999864
No 75
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.63 E-value=6.3e-06 Score=78.41 Aligned_cols=49 Identities=22% Similarity=0.548 Sum_probs=38.1
Q ss_pred ccccccccccccc----c---e-eccCCCcccHHHHHHHhccC----------CCCccccCcCcCCC
Q 004419 699 ILKCGVCFDRPKE----V---V-ITKCFHLFCNPCIQRNLEIR----------HRKCPGCGTAFGQS 747 (754)
Q Consensus 699 ~~~C~iC~~~~~~----~---~-~~~CgH~fC~~C~~~~~~~~----------~~~Cp~C~~~~~~~ 747 (754)
...|+||+..+.+ | + ..+|||.|...|+..|+... ...||.|+.+++.+
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 4589999988765 2 1 13799999999999998642 14699999998764
No 76
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=97.40 E-value=0.00049 Score=56.67 Aligned_cols=31 Identities=26% Similarity=0.580 Sum_probs=23.6
Q ss_pred ccccccccccccce----eccCCCcccHHHHHHHh
Q 004419 700 LKCGVCFDRPKEVV----ITKCFHLFCNPCIQRNL 730 (754)
Q Consensus 700 ~~C~iC~~~~~~~~----~~~CgH~fC~~C~~~~~ 730 (754)
..|.+|...|.-.. --.||++||..|.....
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCCcc
Confidence 47999999886321 12799999999987654
No 77
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.35 E-value=0.066 Score=46.68 Aligned_cols=37 Identities=11% Similarity=-0.029 Sum_probs=14.3
Q ss_pred HhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 004419 535 AERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQ 571 (754)
Q Consensus 535 ~~l~~~l~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~ 571 (754)
..++..+..+......+...+..+....+.++.....
T Consensus 91 ~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~ 127 (189)
T 2v71_A 91 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 127 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333344444333333333333333333333333333
No 78
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.06 E-value=0.00046 Score=64.32 Aligned_cols=49 Identities=16% Similarity=0.495 Sum_probs=40.2
Q ss_pred cccccccccccccceecc-CCCcccHHHHHHHhccC-CCCccccCcCcCCC
Q 004419 699 ILKCGVCFDRPKEVVITK-CFHLFCNPCIQRNLEIR-HRKCPGCGTAFGQS 747 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~-CgH~fC~~C~~~~~~~~-~~~Cp~C~~~~~~~ 747 (754)
...|.+|.+.....+..+ |||.|-..|+..|+..+ ...||.|+.++...
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 568999999887655554 99999999999998764 45899999887654
No 79
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.96 E-value=0.00096 Score=73.62 Aligned_cols=60 Identities=15% Similarity=0.008 Sum_probs=53.3
Q ss_pred HhccCCcccccccccccccceeccCC-CcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 693 IKDCKAILKCGVCFDRPKEVVITKCF-HLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 693 ~~~~~~~~~C~iC~~~~~~~~~~~Cg-H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
....-..+.|||-++.+.+||++|.| |+|-..+|..|+.. ..+||.-|.+++..++.|++
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~ 945 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNE 945 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECH
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccH
Confidence 44555679999999999999999998 69999999999985 77899999999999988874
No 80
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.92 E-value=0.15 Score=43.13 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 004419 559 LSEKQALARQLQQIN 573 (754)
Q Consensus 559 ~~e~~~l~~~l~~~~ 573 (754)
......++.++..+.
T Consensus 61 ~~~k~~Leke~~~LQ 75 (168)
T 3o0z_A 61 ENSKSQTDKDYYQLQ 75 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 81
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.60 E-value=0.00077 Score=53.81 Aligned_cols=31 Identities=19% Similarity=0.638 Sum_probs=26.8
Q ss_pred cccccccccc-ccccee--ccCCCcccHHHHHHH
Q 004419 699 ILKCGVCFDR-PKEVVI--TKCFHLFCNPCIQRN 729 (754)
Q Consensus 699 ~~~C~iC~~~-~~~~~~--~~CgH~fC~~C~~~~ 729 (754)
.+.|++|.+. +..++. ++|||.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4789999975 677887 899999999999983
No 82
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.60 E-value=0.27 Score=41.45 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=32.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004419 608 AVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTS 679 (754)
Q Consensus 608 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~l~~l~~ 679 (754)
....+.+...+..+...+.+........+..+..+...+..+...+......+..+..++...-..+..+.+
T Consensus 69 sqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~ 140 (155)
T 2efr_A 69 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLS 140 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333344444444444444444444444444444444444444444444444444444444444444444433
No 83
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=96.51 E-value=0.0025 Score=45.12 Aligned_cols=42 Identities=29% Similarity=0.790 Sum_probs=32.7
Q ss_pred CcccccccccccccceeccC----CCcccHHHHHHHhcc----CCCCccc
Q 004419 698 AILKCGVCFDRPKEVVITKC----FHLFCNPCIQRNLEI----RHRKCPG 739 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~C----gH~fC~~C~~~~~~~----~~~~Cp~ 739 (754)
..+.|.+|.+...++-..-| +|.||+.|...+++. .-..||.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 45899999999988666655 899999999988764 2335776
No 84
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.34 E-value=1.2 Score=56.98 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=21.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 004419 601 NSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELEN 655 (754)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~ 655 (754)
+.++......+...+..+.+++..+..++.+......+...+...+..+...+.+
T Consensus 2020 e~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A 2020 ENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333333
No 85
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.23 E-value=1.7 Score=55.86 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004419 656 ERNERKKLEEELMEVNNKVA 675 (754)
Q Consensus 656 ~~~~~~~~~~e~~~~~~~l~ 675 (754)
+..+..+....+..+...+.
T Consensus 2082 L~~Ek~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A 2082 LNSERGRWEQQSENFNTQMS 2101 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccHHHHHHHHHHHHH
Confidence 33333444444444443333
No 86
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.15 E-value=1.1 Score=36.86 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 004419 473 AAEAEIIELVAKLDA 487 (754)
Q Consensus 473 ~~~~el~~l~~~~~~ 487 (754)
....++..+...+..
T Consensus 17 ~~~eel~~lke~l~k 31 (129)
T 2fxo_A 17 SMKEEFTRLKEALEK 31 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 87
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.11 E-value=1.2 Score=36.78 Aligned_cols=45 Identities=18% Similarity=0.360 Sum_probs=21.7
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004419 634 SSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELT 678 (754)
Q Consensus 634 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~l~~l~ 678 (754)
.++..+..+...+.........+.....+++.++..+...+..+.
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444455555555555555555443
No 88
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=94.59 E-value=0.035 Score=40.66 Aligned_cols=46 Identities=24% Similarity=0.577 Sum_probs=36.8
Q ss_pred cccccccccccc----ceec---cCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 700 LKCGVCFDRPKE----VVIT---KCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 700 ~~C~iC~~~~~~----~~~~---~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
..|.||.+...- .+.. -|+-..|.+|...-.......||.|+.++.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 589999887532 2233 577788999999998888889999999997
No 89
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.50 E-value=0.015 Score=56.71 Aligned_cols=55 Identities=24% Similarity=0.519 Sum_probs=40.3
Q ss_pred ccCCcccccccccccccceec-cCCCcccHHHH---HHHhccCCCCccccCcCcCCCCC
Q 004419 695 DCKAILKCGVCFDRPKEVVIT-KCFHLFCNPCI---QRNLEIRHRKCPGCGTAFGQSDV 749 (754)
Q Consensus 695 ~~~~~~~C~iC~~~~~~~~~~-~CgH~fC~~C~---~~~~~~~~~~Cp~C~~~~~~~d~ 749 (754)
...-.+.||+-+..+..|+.- .|.|+-|++-. ......+.-.||+|+..+...||
T Consensus 245 s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 245 STIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp EEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred eeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 334458999999999998887 79999887652 22222345579999999887765
No 90
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=93.32 E-value=0.012 Score=56.70 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=33.8
Q ss_pred cccccccccccccceec----cCC--CcccHHHHHHHhccCCCCccccCcC
Q 004419 699 ILKCGVCFDRPKEVVIT----KCF--HLFCNPCIQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~----~Cg--H~fC~~C~~~~~~~~~~~Cp~C~~~ 743 (754)
...||||+....-.++. .=| |.+|+.|-..|.- ...+||.|+..
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~-~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY-VRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC-CTTSCSSSCCC
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee-cCcCCcCCCCC
Confidence 46999999888765554 245 4669999999977 46689999986
No 91
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=93.11 E-value=0.049 Score=53.07 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=40.1
Q ss_pred cCCcccccccccccccceec-cCCCcccHHHHH---HHhccCCCCccccCcCcCCCCCc
Q 004419 696 CKAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQ---RNLEIRHRKCPGCGTAFGQSDVR 750 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~---~~~~~~~~~Cp~C~~~~~~~d~~ 750 (754)
+.-.+.||+-+..+..|+.- .|.|+-|++-.. .....+.-.||+|+..+...|+.
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 34458999999999998887 799997776432 22223445799999999877653
No 92
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=92.81 E-value=0.065 Score=36.62 Aligned_cols=41 Identities=27% Similarity=0.541 Sum_probs=31.2
Q ss_pred ccccccccccccce---eccCCCcccHHHHHHHhccCCCCccccC
Q 004419 700 LKCGVCFDRPKEVV---ITKCFHLFCNPCIQRNLEIRHRKCPGCG 741 (754)
Q Consensus 700 ~~C~iC~~~~~~~~---~~~CgH~fC~~C~~~~~~~~~~~Cp~C~ 741 (754)
..|-.|...|.+.. -..|++.||..|---... ....||.|-
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe-~Lh~CPgC~ 59 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHD-SLHSCPGCI 59 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTT-TSCSSSTTC
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHh-hccCCcCCC
Confidence 35999999886543 337999999999775555 477899993
No 93
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=92.47 E-value=4.2 Score=34.08 Aligned_cols=43 Identities=28% Similarity=0.378 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHhccCC
Q 004419 656 ERNERKKLEEELMEVNNKVAELTSETGE--AAIQKLQDEIKDCKA 698 (754)
Q Consensus 656 ~~~~~~~~~~e~~~~~~~l~~l~~~~~~--~~~~~l~~e~~~~~~ 698 (754)
....+..++.++..+...+..|...... .....+.+.|..+..
T Consensus 99 aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~ 143 (147)
T 2b9c_A 99 SEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKK 143 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555444333 233445555555543
No 94
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=92.38 E-value=0.014 Score=47.12 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=28.4
Q ss_pred ccccccccccccce----eccCCCcccHHHHHHHhccCCCCccccCc
Q 004419 700 LKCGVCFDRPKEVV----ITKCFHLFCNPCIQRNLEIRHRKCPGCGT 742 (754)
Q Consensus 700 ~~C~iC~~~~~~~~----~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~ 742 (754)
..|..|...|.-.. --.||++||..|...... ..+-|-.|-.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C~~ 65 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLCQR 65 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-CceECHHHHH
Confidence 58999998886421 227999999999887655 3556777753
No 95
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=91.94 E-value=0.26 Score=41.81 Aligned_cols=43 Identities=19% Similarity=0.488 Sum_probs=29.1
Q ss_pred cccccccccccc-----cceeccCCCcccHHHHHHHhccCCCCccccC
Q 004419 699 ILKCGVCFDRPK-----EVVITKCFHLFCNPCIQRNLEIRHRKCPGCG 741 (754)
Q Consensus 699 ~~~C~iC~~~~~-----~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~ 741 (754)
...|.+|..+|. ..+...|+|.+|..|.........-.|-.|.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~ 115 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCH 115 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHH
Confidence 479999998873 2444589999999998433222233476675
No 96
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.55 E-value=5 Score=32.95 Aligned_cols=10 Identities=20% Similarity=0.036 Sum_probs=3.6
Q ss_pred hHHHHHHHHh
Q 004419 536 ERDDLNIKLV 545 (754)
Q Consensus 536 ~l~~~l~~l~ 545 (754)
.++..+..+.
T Consensus 86 ~lE~eL~~~r 95 (129)
T 3tnu_B 86 ELEEALQKAK 95 (129)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhHHHHH
Confidence 3333333333
No 97
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.49 E-value=3.5 Score=33.98 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=5.2
Q ss_pred HhHHHHHHHHhhhh
Q 004419 535 AERDDLNIKLVSES 548 (754)
Q Consensus 535 ~~l~~~l~~l~~e~ 548 (754)
..++..+..+..+.
T Consensus 87 ~~lE~eL~~~r~em 100 (131)
T 3tnu_A 87 GSVEEQLAQLRCEM 100 (131)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 98
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.16 E-value=4.4 Score=31.56 Aligned_cols=12 Identities=25% Similarity=0.457 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 004419 662 KLEEELMEVNNK 673 (754)
Q Consensus 662 ~~~~e~~~~~~~ 673 (754)
..+.++..+..+
T Consensus 83 ~AE~evasLnRr 94 (101)
T 3u59_A 83 DAEAEVASLNRR 94 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 99
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.15 E-value=0.13 Score=38.24 Aligned_cols=46 Identities=24% Similarity=0.577 Sum_probs=34.2
Q ss_pred CcccccccccccccceeccC-CCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 698 AILKCGVCFDRPKEVVITKC-FHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~C-gH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
..+.|..|--.++ -++.| .|.+|..|+...+. +...||+|+.++-.
T Consensus 27 G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLS-VSNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCS-SSSEETTTTEECCC
T ss_pred CcccChhhccccC--CeeeecchhhHHHHHHHHHh-hccCCcccCCcCCc
Confidence 3468988854444 34555 78899999999988 57779999976543
No 100
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.12 E-value=7.5 Score=32.55 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=14.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 004419 604 DRHLAVNLETTKWELADAEKELKWLKSAVTS 634 (754)
Q Consensus 604 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 634 (754)
...+...+......+..++.++..++.-+..
T Consensus 117 ~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~ 147 (154)
T 2ocy_A 117 NKRLTEQLREKDTLLDTLTLQLKNLKKVMHS 147 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555555555544443
No 101
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=88.82 E-value=0.08 Score=55.22 Aligned_cols=31 Identities=16% Similarity=0.331 Sum_probs=0.0
Q ss_pred cccccccccccc----ceeccCCCcccHHHHHHHh
Q 004419 700 LKCGVCFDRPKE----VVITKCFHLFCNPCIQRNL 730 (754)
Q Consensus 700 ~~C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~ 730 (754)
..|..|...|.- .-.-.||++||..|.....
T Consensus 376 ~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 376 MMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -----------------------------------
T ss_pred CcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 579999888863 2223799999999997654
No 102
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=88.70 E-value=0.15 Score=37.24 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=22.9
Q ss_pred cccccccccccccee----ccCCCcccHHHHHHH
Q 004419 700 LKCGVCFDRPKEVVI----TKCFHLFCNPCIQRN 729 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~----~~CgH~fC~~C~~~~ 729 (754)
..|.+|...|.-... -.||++||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 479999998864222 269999999998754
No 103
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=87.84 E-value=0.15 Score=38.13 Aligned_cols=32 Identities=28% Similarity=0.598 Sum_probs=24.1
Q ss_pred ccccccccccccccee----ccCCCcccHHHHHHHh
Q 004419 699 ILKCGVCFDRPKEVVI----TKCFHLFCNPCIQRNL 730 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~----~~CgH~fC~~C~~~~~ 730 (754)
...|.+|...|.-... -.||++||..|.....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~ 54 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNEL 54 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCee
Confidence 3579999998863221 2699999999998654
No 104
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.68 E-value=6.9 Score=28.95 Aligned_cols=69 Identities=17% Similarity=0.177 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 74 SKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVS 142 (754)
Q Consensus 74 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~ 142 (754)
.+++..+..+.......+..+...+..........+..+..++..+..++..++.+...+......+..
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555555555555555555555555555555443
No 105
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=87.30 E-value=0.44 Score=39.35 Aligned_cols=46 Identities=22% Similarity=0.436 Sum_probs=36.7
Q ss_pred cccccccccccc-ceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 700 LKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 700 ~~C~iC~~~~~~-~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
+.|..|...+.. +....=|..||..|.... -..+|+.|+.+|.+.+
T Consensus 31 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~~~ 77 (126)
T 2xqn_T 31 FCCFDCDSILAGEIYVMVNDKPVCKPCYVKN---HAVVCQGCHNAIDPEV 77 (126)
T ss_dssp SBCTTTCCBCTTSEEEEETTEEEEHHHHHHH---SCCBCTTTCSBCCTTS
T ss_pred CCcCCCCCCCCcCEEEeECCEEechHHhCcC---cCccCcccCCcCCcCc
Confidence 689999888765 445577899999999876 3568999999999754
No 106
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=87.07 E-value=0.31 Score=40.01 Aligned_cols=49 Identities=22% Similarity=0.225 Sum_probs=38.4
Q ss_pred ccccccccccc---cceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCC
Q 004419 700 LKCGVCFDRPK---EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 749 (754)
Q Consensus 700 ~~C~iC~~~~~---~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~ 749 (754)
+.|..|...+. ......=|..||..|....... ..+|..|+.+|...++
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchhe
Confidence 68999988885 3455677889999999987652 3379999999998665
No 107
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=86.93 E-value=0.079 Score=33.39 Aligned_cols=26 Identities=27% Similarity=0.653 Sum_probs=17.0
Q ss_pred ccCCCcccHHHHHHHhccCCCCccccCcC
Q 004419 715 TKCFHLFCNPCIQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 715 ~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~ 743 (754)
+.||+.|-.+=+... +..+||.|+-.
T Consensus 7 ~rCg~~fs~~el~~l---P~IrCpyCGyr 32 (48)
T 4ayb_P 7 GKCWKTFTDEQLKVL---PGVRCPYCGYK 32 (48)
T ss_dssp CCTTTTCCCCCSCCC---SSSCCTTTCCS
T ss_pred eccCCCccHHHHhhC---CCcccCccCcE
Confidence 577887755433332 56789999844
No 108
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=86.63 E-value=0.2 Score=37.78 Aligned_cols=47 Identities=23% Similarity=0.443 Sum_probs=30.6
Q ss_pred cccccccccccccee----ccCCCcccHHHHHHHhcc-------CCCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKEVVI----TKCFHLFCNPCIQRNLEI-------RHRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~----~~CgH~fC~~C~~~~~~~-------~~~~Cp~C~~~~~~ 746 (754)
..|.+|...|.-... -.||++||..|....... +.+-|-.|-..+..
T Consensus 22 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~ 79 (84)
T 1z2q_A 22 PACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRS 79 (84)
T ss_dssp CBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHT
T ss_pred CCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhh
Confidence 579999998864222 269999999998765321 23446666544433
No 109
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=86.45 E-value=0.22 Score=38.06 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=23.5
Q ss_pred ccccccccccccc----eeccCCCcccHHHHHHHh
Q 004419 700 LKCGVCFDRPKEV----VITKCFHLFCNPCIQRNL 730 (754)
Q Consensus 700 ~~C~iC~~~~~~~----~~~~CgH~fC~~C~~~~~ 730 (754)
..|.+|...|.-. ---.||++||..|.....
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 4799999888632 222799999999988654
No 110
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=86.34 E-value=7.8 Score=28.24 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004419 72 QLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESR 137 (754)
Q Consensus 72 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~ 137 (754)
.|..++..+-..|.-++-++.+++.+...+..+.+.+......+..+...+..+....+..+..+-
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555666665555555555555555554445555555555554444444443
No 111
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=85.75 E-value=0.19 Score=38.10 Aligned_cols=31 Identities=23% Similarity=0.451 Sum_probs=23.3
Q ss_pred cccccccccccccee----ccCCCcccHHHHHHHh
Q 004419 700 LKCGVCFDRPKEVVI----TKCFHLFCNPCIQRNL 730 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~----~~CgH~fC~~C~~~~~ 730 (754)
..|.+|...|.-... -.||++||..|.....
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~ 44 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSA 44 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEE
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChhHcCCce
Confidence 579999988863221 2699999999987643
No 112
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=85.45 E-value=0.091 Score=39.86 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=21.2
Q ss_pred cccccccccc-----cceecc-CCCcccHHHHHHH
Q 004419 701 KCGVCFDRPK-----EVVITK-CFHLFCNPCIQRN 729 (754)
Q Consensus 701 ~C~iC~~~~~-----~~~~~~-CgH~fC~~C~~~~ 729 (754)
-||-|...+. .+|.-| |||.||+.|...|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 3888865442 245555 9999999999887
No 113
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.42 E-value=16 Score=36.95 Aligned_cols=36 Identities=11% Similarity=0.165 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 004419 621 AEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENE 656 (754)
Q Consensus 621 l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 656 (754)
|+..+..|+..+...-..++.|+..|.++..+|.++
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333332233333333333333333333
No 114
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.06 E-value=0.22 Score=37.49 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=22.6
Q ss_pred cccccccccccccee----ccCCCcccHHHHHHH
Q 004419 700 LKCGVCFDRPKEVVI----TKCFHLFCNPCIQRN 729 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~----~~CgH~fC~~C~~~~ 729 (754)
..|.+|...|.-... -.||++||..|....
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 579999998853221 269999999998754
No 115
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=84.38 E-value=2.1 Score=35.34 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=30.1
Q ss_pred Ccccccccccccc-----cceeccCCCcccHHHHHHHhcc---CCCCccccCc
Q 004419 698 AILKCGVCFDRPK-----EVVITKCFHLFCNPCIQRNLEI---RHRKCPGCGT 742 (754)
Q Consensus 698 ~~~~C~iC~~~~~-----~~~~~~CgH~fC~~C~~~~~~~---~~~~Cp~C~~ 742 (754)
....|.+|...|. ..+...|.|.+|..|....... ..-.|-.|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 4478999998883 2345589999999998754221 1223777763
No 116
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.49 E-value=16 Score=29.37 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004419 652 ELENERNERKKLEEELMEVNNKVAELTSET 681 (754)
Q Consensus 652 ~l~~~~~~~~~~~~e~~~~~~~l~~l~~~~ 681 (754)
.++........++..++.+..++.-++..+
T Consensus 77 ~lD~~~l~r~dLE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 77 DVDNASLARLDLERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344455666666666666655444
No 117
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=83.16 E-value=0.55 Score=36.89 Aligned_cols=46 Identities=28% Similarity=0.669 Sum_probs=34.4
Q ss_pred ccccccccccccc-eeccCCCcccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 700 LKCGVCFDRPKEV-VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 700 ~~C~iC~~~~~~~-~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
+.|..|...+... ....=|..||..|.... -.++|+.|+.+|.+.+
T Consensus 34 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~~~ 80 (101)
T 2cup_A 34 FRCAKCLHPLANETFVAKDNKILCNKCTTRE---DSPKCKGCFKAIVAGD 80 (101)
T ss_dssp CCCSSSCCCTTSSCCEEETTEEECHHHHTTC---CCCBCSSSCCBCCSSS
T ss_pred CcccccCCCCCcCeeECcCCEEEChhHhhhh---cCCccccCCCccccCC
Confidence 6788887777543 34456889999998654 3568999999998664
No 118
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=83.05 E-value=0.29 Score=45.15 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=23.9
Q ss_pred cccccccccccccce----eccCCCcccHHHHHHHh
Q 004419 699 ILKCGVCFDRPKEVV----ITKCFHLFCNPCIQRNL 730 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~----~~~CgH~fC~~C~~~~~ 730 (754)
...|++|...|.-.. .-.||++||..|.....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCee
Confidence 358999999886321 12699999999988654
No 119
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=83.01 E-value=16 Score=28.89 Aligned_cols=56 Identities=11% Similarity=0.023 Sum_probs=23.0
Q ss_pred HHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Q 004419 364 KAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQ 419 (754)
Q Consensus 364 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~l~~~~~~~~~ 419 (754)
.+..--.+.++..+.+..++..+..-+-.....-..+..+.-+...++..+..|+.
T Consensus 106 DLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR~ 161 (167)
T 4gkw_A 106 DLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYRA 161 (167)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 33333333344444444444444332222222233344444444445555555543
No 120
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=82.29 E-value=0.1 Score=38.97 Aligned_cols=40 Identities=23% Similarity=0.450 Sum_probs=26.2
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
..||.|...+.- .=|+.+|..|-..+.. ...||.|+.++.
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred ccCccCCCccee----cCCEEECccccchhhc--cccCcchhhHHH
Confidence 799999766532 1144458888776533 446888887654
No 121
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=81.91 E-value=0.88 Score=40.44 Aligned_cols=46 Identities=20% Similarity=0.477 Sum_probs=30.9
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
+.|..|...+.......=|..||..|..... ..+|..|+.+|.+.+
T Consensus 88 F~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 88 LKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPPTQ 133 (182)
T ss_dssp TSCTTTCCCCSSCCEEETTEEECHHHHHHTT---SCCCTTTCCCCCSSC
T ss_pred CccCCCCCccCCCceeECCEeeecCcccccc---ccccccCCCccCCCc
Confidence 5666666665543334456678888887653 457999999888765
No 122
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=81.53 E-value=0.39 Score=44.31 Aligned_cols=31 Identities=19% Similarity=0.476 Sum_probs=23.5
Q ss_pred ccccccccccccce----eccCCCcccHHHHHHHh
Q 004419 700 LKCGVCFDRPKEVV----ITKCFHLFCNPCIQRNL 730 (754)
Q Consensus 700 ~~C~iC~~~~~~~~----~~~CgH~fC~~C~~~~~ 730 (754)
-.|.+|...|.-.. .-.||++||..|.....
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 48999998886322 22799999999988643
No 123
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=81.28 E-value=0.11 Score=37.86 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=12.3
Q ss_pred CCCccccCcCcCCCCCccc
Q 004419 734 HRKCPGCGTAFGQSDVRFV 752 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~d~~~~ 752 (754)
..+|+.|+.-++.+.|...
T Consensus 51 ~yFC~~C~~LiSkkrv~f~ 69 (81)
T 2jrp_A 51 DYFCQNGHGLISKKRVNFV 69 (81)
T ss_dssp EECCTTTTCCCCTTSSEEE
T ss_pred CeeeccCCCEeecceEEEE
Confidence 4467777777777665433
No 124
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=80.97 E-value=18 Score=28.33 Aligned_cols=35 Identities=11% Similarity=-0.043 Sum_probs=13.9
Q ss_pred HhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 004419 535 AERDDLNIKLVSESVKTKQVQSFLLSEKQALARQL 569 (754)
Q Consensus 535 ~~l~~~l~~l~~e~~~~~~~~~~l~~e~~~l~~~l 569 (754)
..++.++..+......+...+..+....+.++...
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~ 72 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 72 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 33344444444433333333444444444443333
No 125
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=80.90 E-value=1.2 Score=39.00 Aligned_cols=46 Identities=20% Similarity=0.481 Sum_probs=35.4
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
+.|..|...+.......=|..||..|...... .+|..|+.+|...+
T Consensus 34 F~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 34 LKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPPTQ 79 (169)
T ss_dssp SBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCCTTS
T ss_pred CccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccCCCc
Confidence 68888988877654556788999999887643 47999998887654
No 126
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=79.80 E-value=0.61 Score=35.94 Aligned_cols=28 Identities=21% Similarity=0.538 Sum_probs=17.6
Q ss_pred ceeccCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 712 VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 712 ~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
+....||+.|+ + ... ....||.|+...-
T Consensus 68 ~~C~~CG~~F~----~-~~~-kPsrCP~CkSe~I 95 (105)
T 2gmg_A 68 AQCRKCGFVFK----A-EIN-IPSRCPKCKSEWI 95 (105)
T ss_dssp CBBTTTCCBCC----C-CSS-CCSSCSSSCCCCB
T ss_pred cChhhCcCeec----c-cCC-CCCCCcCCCCCcc
Confidence 44568999992 1 111 3457999986543
No 127
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=79.66 E-value=0.17 Score=35.53 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=23.4
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
.+.|++|...|.....+. ..........||.|+..|...+
T Consensus 14 ~~~C~~C~k~F~~~~~l~----------~~H~~~k~~~C~~C~k~f~~~~ 53 (62)
T 1vd4_A 14 SFKCPVCSSTFTDLEANQ----------LFDPMTGTFRCTFCHTEVEEDE 53 (62)
T ss_dssp EEECSSSCCEEEHHHHHH----------HEETTTTEEBCSSSCCBCEECT
T ss_pred CccCCCCCchhccHHHhH----------hhcCCCCCEECCCCCCccccCc
Confidence 367888877776532221 0011112346999999998654
No 128
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=78.04 E-value=1.2 Score=36.86 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=36.5
Q ss_pred ccccccccccc---cceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 700 LKCGVCFDRPK---EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 700 ~~C~iC~~~~~---~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
+.|..|...+. .+....=|..||..|....... ..+|+.|+.+|.+.+
T Consensus 30 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~~e 80 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRAYE 80 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECTTS
T ss_pred cccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCccc
Confidence 68999988885 3555677889999999887542 227999999998654
No 129
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=77.90 E-value=0.85 Score=39.68 Aligned_cols=12 Identities=33% Similarity=0.775 Sum_probs=8.7
Q ss_pred CCCccccCcCcC
Q 004419 734 HRKCPGCGTAFG 745 (754)
Q Consensus 734 ~~~Cp~C~~~~~ 745 (754)
...||.|+.|-+
T Consensus 153 p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 153 PEYCPVCGAPKE 164 (170)
T ss_dssp CSBCTTTCCBGG
T ss_pred CCCCCCCCCCHH
Confidence 348999997643
No 130
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=77.87 E-value=0.87 Score=31.55 Aligned_cols=43 Identities=26% Similarity=0.524 Sum_probs=26.0
Q ss_pred CcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 698 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
..+.|++|...|.....+. .|. ......+...||.|+..|...
T Consensus 3 Kpy~C~~C~k~F~~~~~L~-~H~------~~Ht~ekp~~C~~C~k~F~~~ 45 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLS-RHR------RAHLGYRPRSCPECGKCFRDQ 45 (60)
T ss_dssp CCEECTTTCCEESSHHHHH-HHH------HHHHTCCCEECTTTCCEESSH
T ss_pred CCccCCCCCCEeCCHHHHH-HHH------HHhCCCcCeECCCCCCCcCCH
Confidence 3478999988887643321 121 111222455799999999864
No 131
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=77.50 E-value=18 Score=26.29 Aligned_cols=39 Identities=28% Similarity=0.327 Sum_probs=19.6
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004419 105 IENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSL 143 (754)
Q Consensus 105 l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~l 143 (754)
++........++.++..+-..++---.++.+++..+.++
T Consensus 36 Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 36 LEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 333333334444445555555555555556666555554
No 132
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=77.20 E-value=0.91 Score=40.56 Aligned_cols=48 Identities=25% Similarity=0.474 Sum_probs=36.0
Q ss_pred cccccccccccc---ceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 700 LKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 700 ~~C~iC~~~~~~---~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
+.|..|...+.. +....=|..||..|....... ..+|+.|+.+|...+
T Consensus 33 F~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPASE 83 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECTTS
T ss_pred cccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCccccCc
Confidence 688889888764 556677889999999876541 226999999887654
No 133
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=76.71 E-value=36 Score=33.02 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=24.9
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004419 21 LQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFH 61 (754)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 61 (754)
+...+..+..+++.+++.+..+...+.....-+..+...+.
T Consensus 58 Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk 98 (390)
T 1deq_A 58 IDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMR 98 (390)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45566777777777777777776665555544444444333
No 134
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=76.34 E-value=0.33 Score=36.06 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=22.5
Q ss_pred cccccc--cccccc-----cceec------cCCCcccHHHHHHHhc
Q 004419 699 ILKCGV--CFDRPK-----EVVIT------KCFHLFCNPCIQRNLE 731 (754)
Q Consensus 699 ~~~C~i--C~~~~~-----~~~~~------~CgH~fC~~C~~~~~~ 731 (754)
..-||- |...+. ..|.- .|||.||+.|...|..
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 346877 754432 23444 5999999999998744
No 135
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=76.14 E-value=0.47 Score=34.67 Aligned_cols=40 Identities=20% Similarity=0.494 Sum_probs=27.3
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
..||.|...+... =|+.+|..|-..+... ..||.|+.++.
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~~~~--afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDFSLQ--ALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEEEEE--EECSSSCSCCC
T ss_pred CCCCCCCCccccC----CCceECccccccCCCc--ccCcchhhHHH
Confidence 6899997654321 1355588888876553 37999998874
No 136
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=76.09 E-value=0.94 Score=40.44 Aligned_cols=10 Identities=30% Similarity=0.959 Sum_probs=8.0
Q ss_pred CCCccccCcC
Q 004419 734 HRKCPGCGTA 743 (754)
Q Consensus 734 ~~~Cp~C~~~ 743 (754)
...||.|+.+
T Consensus 171 p~~CP~C~~~ 180 (191)
T 1lko_A 171 PELCPACAHP 180 (191)
T ss_dssp CSBCTTTCCB
T ss_pred CCCCCCCcCC
Confidence 3389999986
No 137
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=75.01 E-value=25 Score=26.69 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 571 QINALVESAKLRILHAEEQMKACL 594 (754)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~ 594 (754)
.++..+.....++..++.+...+.
T Consensus 13 ~LNdRlAsyIdKVR~LEqqN~~Le 36 (93)
T 3s4r_A 13 ELNDRFANLIDKVRFLEQQNKILL 36 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 138
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=74.24 E-value=1.2 Score=30.01 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=25.3
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
.+.|++|...|.....+. .|+ ......+...||.|+..|...
T Consensus 4 ~~~C~~C~~~f~~~~~l~-~H~------~~h~~~~~~~C~~C~~~f~~~ 45 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLN-IHL------RTHTGEKPYKCEFCEYAAAQK 45 (57)
T ss_dssp -CBCTTTCCBCSCHHHHH-HHH------HHHHCCCCEECSSSSCEESSH
T ss_pred CccCCCCcchhCChHHHH-HHH------HHcCCCCCcCCCCCcchhCCH
Confidence 478999988887643331 121 112222345799999998764
No 139
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=74.21 E-value=1.4 Score=29.50 Aligned_cols=43 Identities=16% Similarity=0.069 Sum_probs=24.1
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
.+.|++|...|.....+. .|+. ......+...||.|+..|..+
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~~-----~~H~~~k~~~C~~C~k~F~~~ 54 (54)
T 2eps_A 12 PYICQSCGKGFSRPDHLN-GHIK-----QVHTSERPHKCQVWVSGPSSG 54 (54)
T ss_dssp CEECSSSCCEESSHHHHH-HHHH-----HTSCCCCCCCSSSSCCSSCCC
T ss_pred CeECCCCCcccCCHHHHH-HHHH-----HhcCCCCCccCCCCCCCCCCC
Confidence 478888888876532221 1110 000112345799999999763
No 140
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=73.84 E-value=0.87 Score=32.49 Aligned_cols=17 Identities=35% Similarity=0.682 Sum_probs=13.6
Q ss_pred CCCccccCcCcCCCCCc
Q 004419 734 HRKCPGCGTAFGQSDVR 750 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~d~~ 750 (754)
..+||+|+.-|-.+.+.
T Consensus 51 ~FkCP~CgEEFyG~~Lp 67 (95)
T 2k5c_A 51 VFKCPVCGEEFYGKTLP 67 (95)
T ss_dssp EEECTTTCCEEETTSSC
T ss_pred hhcCCCccHHHhcccCC
Confidence 45799999999887654
No 141
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.75 E-value=1.1 Score=32.23 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=22.0
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
.+.|++|...|.....+.- .....||.|+..|...
T Consensus 18 ~~~C~~C~k~f~~~~~l~~--------------~~~~~C~~C~~~f~~~ 52 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSR--------------RKTPMCEKCRKDSCQE 52 (73)
T ss_dssp EEECSSSCCEEECCCCCCC--------------SSSCCCHHHHHTCSCC
T ss_pred CeeCCcccchhCCHHHhCc--------------CCCCCCCCCChhhcCH
Confidence 4789999999876544432 1334566666666544
No 142
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=73.16 E-value=27 Score=26.25 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 647 EDMRKELENERNERKKLEEELMEVN 671 (754)
Q Consensus 647 ~~~~~~l~~~~~~~~~~~~e~~~~~ 671 (754)
.++......+......++..+..+.
T Consensus 59 ~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 59 KQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444333
No 143
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=73.12 E-value=2.5 Score=35.16 Aligned_cols=44 Identities=27% Similarity=0.558 Sum_probs=29.7
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhc----------cCCCCccccCc
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLE----------IRHRKCPGCGT 742 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~----------~~~~~Cp~C~~ 742 (754)
...|.+|.+.=.-..--.|-..||..|+...+. ...-.||.|..
T Consensus 63 ~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 357888876543222237889999999996542 23346999974
No 144
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=73.04 E-value=1.9 Score=31.84 Aligned_cols=47 Identities=15% Similarity=0.252 Sum_probs=30.5
Q ss_pred ccccccccccccc--ceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCC
Q 004419 699 ILKCGVCFDRPKE--VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 749 (754)
Q Consensus 699 ~~~C~iC~~~~~~--~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~ 749 (754)
...|..|.....- +..-.||++||..--..- ...||..-...+...|
T Consensus 25 ~~rC~~C~kkvgl~~~f~CrCg~~FC~~HRy~e----~H~C~fDyK~~gr~~i 73 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECRCGNNFCASHRYAE----AHGCNYDYKSAGRRYL 73 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECTTCCEECTTTCSTG----GGTCCSCCSSSCCCCC
T ss_pred CccchhhCCeecccCCeEcCCCCEecccCCCcc----CCCCcchhhHHHHHHH
Confidence 3689999876543 667789999998654332 3358875444444433
No 145
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=73.00 E-value=3.1 Score=30.30 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=22.8
Q ss_pred Ccccccccccccccceecc---CCCcccHHHHHHHh
Q 004419 698 AILKCGVCFDRPKEVVITK---CFHLFCNPCIQRNL 730 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~---CgH~fC~~C~~~~~ 730 (754)
..-.|+||. .|.....+| ||..|-..|+.+..
T Consensus 14 ~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~g 48 (89)
T 1wil_A 14 NDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRMG 48 (89)
T ss_dssp CSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHHT
T ss_pred CCcccCccc-cccccceeccccccccccHhhccccc
Confidence 446899984 444555554 68899999999863
No 146
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=72.86 E-value=1.2 Score=28.56 Aligned_cols=8 Identities=50% Similarity=1.340 Sum_probs=6.8
Q ss_pred CccccCcC
Q 004419 736 KCPGCGTA 743 (754)
Q Consensus 736 ~Cp~C~~~ 743 (754)
.||.|+.+
T Consensus 32 ~CP~Cg~~ 39 (46)
T 6rxn_A 32 CCPVCGVS 39 (46)
T ss_dssp BCTTTCCB
T ss_pred cCcCCCCc
Confidence 69999975
No 147
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=71.82 E-value=1.5 Score=30.24 Aligned_cols=31 Identities=19% Similarity=0.614 Sum_probs=23.9
Q ss_pred cccccccccccccceeccC-CCcccHHHHHHHh
Q 004419 699 ILKCGVCFDRPKEVVITKC-FHLFCNPCIQRNL 730 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~C-gH~fC~~C~~~~~ 730 (754)
..-|.||.+. ....-+.| |-+||..|.....
T Consensus 8 ~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 8 LPWCCICNED-ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CSSCTTTCSC-CCEEETTTTSEEECSSHHHHHT
T ss_pred CCeeEEeCCC-CeEEecCCCCceehHHHHHHHc
Confidence 3568899887 33445588 9999999999876
No 148
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=71.80 E-value=2.5 Score=37.95 Aligned_cols=11 Identities=36% Similarity=0.649 Sum_probs=8.3
Q ss_pred CCccccCcCcC
Q 004419 735 RKCPGCGTAFG 745 (754)
Q Consensus 735 ~~Cp~C~~~~~ 745 (754)
-.||.|+.+=+
T Consensus 187 ~~CP~C~~~k~ 197 (202)
T 1yuz_A 187 EKCPICFRPKD 197 (202)
T ss_dssp SBCTTTCCBGG
T ss_pred CCCCCCCCChH
Confidence 47999998643
No 149
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=71.69 E-value=1 Score=39.22 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=16.1
Q ss_pred eccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 714 ITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 714 ~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
...|||.|=.. .....||.|+.++..
T Consensus 135 C~~Cg~~~~~~-------~~~~~Cp~CG~~~~~ 160 (165)
T 2lcq_A 135 CIGCGRKFSTL-------PPGGVCPDCGSKVKL 160 (165)
T ss_dssp ESSSCCEESSC-------CGGGBCTTTCCBEEE
T ss_pred CCCCCCcccCC-------CCCCcCCCCCCccee
Confidence 34677777322 123479999988643
No 150
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=71.52 E-value=30 Score=26.02 Aligned_cols=13 Identities=8% Similarity=0.092 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 004419 474 AEAEIIELVAKLD 486 (754)
Q Consensus 474 ~~~el~~l~~~~~ 486 (754)
...++..++..+.
T Consensus 19 ~eeel~~lke~l~ 31 (89)
T 3bas_A 19 QLKQMDKMKEDLA 31 (89)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 151
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=69.91 E-value=0.52 Score=33.66 Aligned_cols=16 Identities=44% Similarity=0.881 Sum_probs=11.1
Q ss_pred CCCccccCcCcCCCCCc
Q 004419 734 HRKCPGCGTAFGQSDVR 750 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~d~~ 750 (754)
+..|| |+..+....++
T Consensus 21 T~~C~-CG~~~~~~k~r 36 (71)
T 1gh9_A 21 TRKCV-CGRTVNVKDRR 36 (71)
T ss_dssp EEEET-TTEEEECCSSS
T ss_pred EEECC-CCCeeeeceEE
Confidence 44599 98887776544
No 152
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=69.67 E-value=38 Score=26.52 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 004419 467 CQQRLSAAEAEIIELVAKLDAS 488 (754)
Q Consensus 467 ~~~~l~~~~~el~~l~~~~~~~ 488 (754)
+......+..++..++.++...
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~ 29 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQ 29 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666555544
No 153
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=69.65 E-value=47 Score=27.55 Aligned_cols=19 Identities=26% Similarity=-0.034 Sum_probs=6.8
Q ss_pred HhhhhhhhHHHHHHHHHHH
Q 004419 544 LVSESVKTKQVQSFLLSEK 562 (754)
Q Consensus 544 l~~e~~~~~~~~~~l~~e~ 562 (754)
+..+...++..+..+..+.
T Consensus 108 Lqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 108 GTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 154
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=68.27 E-value=34 Score=25.34 Aligned_cols=7 Identities=29% Similarity=0.648 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 004419 662 KLEEELM 668 (754)
Q Consensus 662 ~~~~e~~ 668 (754)
.++.++.
T Consensus 94 h~ene~a 100 (114)
T 2xzr_A 94 HIENEIA 100 (114)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 155
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.07 E-value=0.99 Score=36.31 Aligned_cols=49 Identities=22% Similarity=0.248 Sum_probs=27.1
Q ss_pred cccccccccccccceec-----cCCC-----cc-cHHHHHHH--hc-------------cCCCCccccCcCcCCC
Q 004419 699 ILKCGVCFDRPKEVVIT-----KCFH-----LF-CNPCIQRN--LE-------------IRHRKCPGCGTAFGQS 747 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~-----~CgH-----~f-C~~C~~~~--~~-------------~~~~~Cp~C~~~~~~~ 747 (754)
.+.|++|...|.....+ ..|| .| |..|...+ .. .+...||.|+..|...
T Consensus 19 ~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~ 93 (115)
T 2dmi_A 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESL 93 (115)
T ss_dssp SEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSH
T ss_pred CEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccCCH
Confidence 46888888887652211 1233 23 55665443 11 1233588888888754
No 156
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=67.33 E-value=3.8 Score=29.83 Aligned_cols=42 Identities=29% Similarity=0.333 Sum_probs=31.4
Q ss_pred cccccccccccc-ceeccCCCcccH-HHHHHHhccCCCCccccCcCc
Q 004419 700 LKCGVCFDRPKE-VVITKCFHLFCN-PCIQRNLEIRHRKCPGCGTAF 744 (754)
Q Consensus 700 ~~C~iC~~~~~~-~~~~~CgH~fC~-~C~~~~~~~~~~~Cp~C~~~~ 744 (754)
+.|..|...+.. +....=|+.||. .|.... -..+|..|+...
T Consensus 28 F~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~---f~~~C~~C~~~~ 71 (76)
T 1iml_A 28 LKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAM---FGPKGFGRGGAE 71 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTHHHHH---SSCCCSSCCCSS
T ss_pred CCccccCccCCCCceECcCCeEeeCHHHHHHH---hCccCCCcCCce
Confidence 689999888765 445567889999 799776 345799998554
No 157
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=66.68 E-value=1.4 Score=26.17 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=10.3
Q ss_pred cccccccccccccc
Q 004419 699 ILKCGVCFDRPKEV 712 (754)
Q Consensus 699 ~~~C~iC~~~~~~~ 712 (754)
-+.||+|+..|.++
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 37888888877664
No 158
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=65.94 E-value=1.5 Score=33.00 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=24.1
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
...|++|...|.....+. .|+. .....+...||.|+..|...+
T Consensus 28 ~h~C~~Cgk~F~~~~~L~-~H~~------~H~~~k~~~C~~C~k~F~~~~ 70 (85)
T 2lv2_A 28 CHLCPVCGESFASKGAQE-RHLR------LLHAAQVFPCKYCPATFYSSP 70 (85)
T ss_dssp TEECTTSCCEESSHHHHH-HHHH------TTSCSSSEECTTSSCEESSHH
T ss_pred CEECCCCCCCcCcHHHHh-hhhh------hccCCCccCCCCCCCEeCCHH
Confidence 357888887777543321 1110 000113446999999998653
No 159
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=65.41 E-value=1.9 Score=29.01 Aligned_cols=41 Identities=24% Similarity=0.491 Sum_probs=23.6
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
+.|++|...|.....+. .|+ ..........||.|+..|...
T Consensus 2 ~~C~~C~~~f~~~~~l~-~H~------~~h~~~~~~~C~~C~~~f~~~ 42 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLK-KHI------RTHTDVRPYHCTYCNFSFKTK 42 (57)
T ss_dssp CBCTTTCCBCSSHHHHH-HHH------HHTSSCCCEECSSSSCEESSH
T ss_pred CcCCCCcCcCCCHHHHH-HHH------HhcCCCCCccCCCCCchhcCH
Confidence 57888888887643331 111 111111344699999998764
No 160
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.35 E-value=4.9 Score=28.83 Aligned_cols=32 Identities=19% Similarity=0.454 Sum_probs=17.7
Q ss_pred cccccccccccc-ceeccCCCcccHHHHHHHhc
Q 004419 700 LKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLE 731 (754)
Q Consensus 700 ~~C~iC~~~~~~-~~~~~CgH~fC~~C~~~~~~ 731 (754)
+.|..|...+.. +....=|+.||..|....+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 456666555543 23344566666666665544
No 161
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=65.35 E-value=5.4 Score=30.28 Aligned_cols=14 Identities=29% Similarity=0.826 Sum_probs=11.0
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 65 ~~~C~~C~~~f~~~ 78 (95)
T 2yt9_A 65 PYICQSCGKGFSRP 78 (95)
T ss_dssp SBCCSSSCCCBSSH
T ss_pred ceECCCccchhCCH
Confidence 34699999998764
No 162
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=64.64 E-value=2.2 Score=33.73 Aligned_cols=24 Identities=25% Similarity=0.735 Sum_probs=20.4
Q ss_pred cccccccccccccceeccCCCccc
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFC 722 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC 722 (754)
...|+.|...-...+-+.|||++|
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgC 47 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYC 47 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEE
T ss_pred CCcCccccCCCCeeeeeecCcccc
Confidence 357999987777788999999999
No 163
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=64.55 E-value=3.3 Score=27.31 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=22.5
Q ss_pred CcccccccccccccceeccC--CCcccHHHHHHHhc
Q 004419 698 AILKCGVCFDRPKEVVITKC--FHLFCNPCIQRNLE 731 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~C--gH~fC~~C~~~~~~ 731 (754)
..+.|+.|+........+.- |-..|..|+.....
T Consensus 10 ~~~~CSFCGk~~~ev~~LIaGpgv~IC~eCi~~~~~ 45 (51)
T 2ds5_A 10 KLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCND 45 (51)
T ss_dssp CCCBCTTTCCBTTTSSCEEECSSCEEEHHHHHHHHH
T ss_pred CCcEecCCCCCHHHhcccCCCCCCEehHHHHHHHHH
Confidence 34789999987755333333 42459999987643
No 164
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=64.40 E-value=2.5 Score=34.23 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=15.2
Q ss_pred cCCCcccHHHHHHHhccCCC-CccccCcCc
Q 004419 716 KCFHLFCNPCIQRNLEIRHR-KCPGCGTAF 744 (754)
Q Consensus 716 ~CgH~fC~~C~~~~~~~~~~-~Cp~C~~~~ 744 (754)
.|||.|=. ..+.. .||.|+.+.
T Consensus 78 ~CG~~~e~-------~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 78 DCSHVFKP-------NALDYGVCEKCHSKN 100 (119)
T ss_dssp SSSCEECS-------CCSTTCCCSSSSSCC
T ss_pred CCCCEEeC-------CCCCCCcCccccCCC
Confidence 67888754 12455 799999773
No 165
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=64.11 E-value=45 Score=25.29 Aligned_cols=82 Identities=21% Similarity=0.248 Sum_probs=43.6
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 178 MDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDS 257 (754)
Q Consensus 178 ~~~~~l~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 257 (754)
..+..|...+...-..+.. |+.+...+..++..+...-. ..-...+...+..++..+..+......
T Consensus 9 e~mq~LNdRlAsyIdKVR~-------LEqqN~~Le~~i~~l~~~~~-------~~~~~~ye~~i~~Lr~~i~~~~~ek~~ 74 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRF-------LEQQNKILLAELEQLKGQGK-------SRLGDLYEEEMRELRRQVDQLTNDKAR 74 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhccC-------CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544444 44444445555544443200 001223556677777777777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 004419 258 LLIDRSLVLRREKEIN 273 (754)
Q Consensus 258 l~~~~~~l~~~~~~~~ 273 (754)
+..+++.+...+..+.
T Consensus 75 l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 75 VEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666665555443
No 166
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=64.02 E-value=2.3 Score=35.82 Aligned_cols=43 Identities=23% Similarity=0.617 Sum_probs=28.2
Q ss_pred cccccccccccccceec---cCCCcccHHHHHHHhccC---------CCCccccCc
Q 004419 699 ILKCGVCFDRPKEVVIT---KCFHLFCNPCIQRNLEIR---------HRKCPGCGT 742 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~---~CgH~fC~~C~~~~~~~~---------~~~Cp~C~~ 742 (754)
..-|.||.+.-. .+.- .|...||..||..++-.. .-.|..|..
T Consensus 79 ~~yC~wC~~Gg~-l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 79 QSYCTICCGGRE-VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp BSSCTTTSCCSE-EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred cceeeEecCCCe-EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 356888876532 2222 488899999999887531 224888874
No 167
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=63.30 E-value=2.8 Score=29.29 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=22.7
Q ss_pred cccccccccccccceeccC--CCcccHHHHHHHhcc
Q 004419 699 ILKCGVCFDRPKEVVITKC--FHLFCNPCIQRNLEI 732 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~C--gH~fC~~C~~~~~~~ 732 (754)
.+.|+.|+.....+..+.- |=..|..|+......
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGpgvyICdeCI~~c~~I 53 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDI 53 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECSSCEEEHHHHHHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCCCCChhHHHHHHHHHH
Confidence 3689999887755333322 434599999977553
No 168
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=62.86 E-value=1.5 Score=30.06 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=23.6
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
+.|++|...|.....+. .|+. .........||.|+..|...
T Consensus 3 ~~C~~C~~~f~~~~~l~-~H~~------~h~~~~~~~C~~C~~~f~~~ 43 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLK-RHYR------SHTNEKPYPCGLCNRAFTRR 43 (60)
T ss_dssp BCCTTTCCCBSCHHHHH-HHHH------TTTSSCSEECTTTCCEESSH
T ss_pred CcCCCCccccCCHHHHH-HHHH------HhCCCCCccCCCCCCccCCH
Confidence 67999988887643331 1110 00111234699999998764
No 169
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=62.25 E-value=50 Score=25.24 Aligned_cols=59 Identities=20% Similarity=0.288 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 616 WELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKV 674 (754)
Q Consensus 616 ~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~l 674 (754)
.+-..+.-++.-++..+...+..+..++....+...++..+......+..++..++..+
T Consensus 23 NEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 23 NEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555555555555555555444443
No 170
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.12 E-value=2.2 Score=33.11 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=25.8
Q ss_pred Ccccccccccccc-cceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 698 AILKCGVCFDRPK-EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 698 ~~~~C~iC~~~~~-~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
..+.|++|...|. ....+. .|+-- .-.. .+...||.|+..|...
T Consensus 23 ~~~~C~~C~k~f~~~~~~L~-~H~~~--h~~~---~~~~~C~~C~k~F~~~ 67 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLK-KHMEV--CQKL---QDALKCQHCRKQFKSK 67 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHHH-HHHHH--HHHH---HHHHSCSSSCCCCSCH
T ss_pred CCcCCCCCCCChhhhHHHHH-HHHHH--HcCC---CCCEECCCCCCccCCH
Confidence 4479999999887 543332 33311 1110 1234699999998764
No 171
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=61.99 E-value=2.7 Score=30.08 Aligned_cols=43 Identities=26% Similarity=0.312 Sum_probs=25.5
Q ss_pred CcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 698 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
..+.|++|...|.....+. .|+- .........||.|+..|...
T Consensus 13 k~~~C~~C~k~f~~~~~L~-~H~~------~h~~~~~~~C~~C~~~f~~~ 55 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILV-QHQR------VHTGEKPYKCLECGKAFSQN 55 (72)
T ss_dssp CCEECSSSCCEESSHHHHH-HHHH------GGGCSCCEECSSSCCEESSH
T ss_pred CCccCCCCCCccCCHHHHH-HHHH------hcCCCCCeECCCCCcccCCH
Confidence 3478999988887643331 1211 11112345799999998764
No 172
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=61.62 E-value=3 Score=30.01 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=25.5
Q ss_pred CcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 698 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
..+.|++|...|.....+. .|+ ......+...||.|+..|...
T Consensus 16 ~~~~C~~C~k~f~~~~~l~-~H~------~~H~~~~~~~C~~C~k~f~~~ 58 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLA-SHK------TVHTGEKPYRCNICGAQFNRP 58 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHH-HHH------HHHCCCCSEECTTTCCEESCH
T ss_pred CCeECCCCCceeCCHHHHH-HHH------HHcCCCCCEECCCCCchhCCH
Confidence 4578999988887643321 121 111112344699999998764
No 173
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=61.38 E-value=0.99 Score=32.92 Aligned_cols=9 Identities=33% Similarity=0.829 Sum_probs=4.8
Q ss_pred CCCccccCc
Q 004419 734 HRKCPGCGT 742 (754)
Q Consensus 734 ~~~Cp~C~~ 742 (754)
..+||.|+.
T Consensus 30 k~FCp~CGn 38 (79)
T 2con_A 30 RVFCGHCGN 38 (79)
T ss_dssp CCSCSSSCC
T ss_pred cccccccCc
Confidence 345666654
No 174
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=61.34 E-value=5.8 Score=29.59 Aligned_cols=14 Identities=36% Similarity=0.769 Sum_probs=11.0
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 65 ~~~C~~C~~~f~~~ 78 (89)
T 2wbs_A 65 PFQCQKCDRAFSRS 78 (89)
T ss_dssp CEECSSSSCEESSH
T ss_pred CccCCCCCcccCCH
Confidence 34699999998764
No 175
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=61.32 E-value=5 Score=39.61 Aligned_cols=44 Identities=16% Similarity=0.479 Sum_probs=28.6
Q ss_pred ccccccccccccceec--cCCCcccHHHHHHHhcc---------CCCCccccCcC
Q 004419 700 LKCGVCFDRPKEVVIT--KCFHLFCNPCIQRNLEI---------RHRKCPGCGTA 743 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~--~CgH~fC~~C~~~~~~~---------~~~~Cp~C~~~ 743 (754)
..|.+|...-.-...- .|.+.||..||..++-. ..-.|-.|...
T Consensus 94 ~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 94 SYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp CSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred ccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 4677776554322222 78999999999988732 12358888744
No 176
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=61.09 E-value=5.6 Score=32.36 Aligned_cols=44 Identities=30% Similarity=0.591 Sum_probs=28.9
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHh----------ccCCCCccccCc
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNL----------EIRHRKCPGCGT 742 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~----------~~~~~~Cp~C~~ 742 (754)
...|.||.+.=.-..--.|-..||..|+...+ ....-.||.|..
T Consensus 57 ~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34699997653322223788999999999652 122346999964
No 177
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=60.87 E-value=11 Score=29.22 Aligned_cols=13 Identities=54% Similarity=1.002 Sum_probs=10.4
Q ss_pred CCccccCcCcCCC
Q 004419 735 RKCPGCGTAFGQS 747 (754)
Q Consensus 735 ~~Cp~C~~~~~~~ 747 (754)
..||.|+..|...
T Consensus 74 ~~C~~C~~~f~~~ 86 (106)
T 2ee8_A 74 FKCQECGKGFCQS 86 (106)
T ss_dssp TSCSSSCCCCSSH
T ss_pred eECCCcCCcccCH
Confidence 4699999988764
No 178
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=60.83 E-value=63 Score=25.85 Aligned_cols=12 Identities=0% Similarity=0.199 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 004419 240 QLQHWNVEVERY 251 (754)
Q Consensus 240 ~~~~l~~~~~~~ 251 (754)
.+..+..++...
T Consensus 48 ~i~~Le~eL~e~ 59 (120)
T 3i00_A 48 HVSELEADLAEQ 59 (120)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 179
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=60.46 E-value=5.8 Score=32.28 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=28.9
Q ss_pred ccccccccccc--cceeccCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 700 LKCGVCFDRPK--EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 700 ~~C~iC~~~~~--~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
+.|..|...+. ......=|..||..|....... +|..|.....
T Consensus 37 F~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~---~~~~~~~~~~ 81 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI---NGGSGGSGGS 81 (123)
T ss_dssp CBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH---HTCCCCCCSC
T ss_pred CccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc---ccCCCCCCCc
Confidence 68888888873 3455667889999998877543 4555544433
No 180
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=60.29 E-value=8.1 Score=29.57 Aligned_cols=49 Identities=20% Similarity=0.385 Sum_probs=28.3
Q ss_pred cccccc--ccccccc---------------ceec---cCCCcccHHH-HHHHh----ccCCCCccccCcCcCCC
Q 004419 699 ILKCGV--CFDRPKE---------------VVIT---KCFHLFCNPC-IQRNL----EIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 699 ~~~C~i--C~~~~~~---------------~~~~---~CgH~fC~~C-~~~~~----~~~~~~Cp~C~~~~~~~ 747 (754)
.+.|++ |...|.. +... .||..|-..- +.... ......||.|+..|...
T Consensus 15 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 88 (100)
T 2ebt_A 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRS 88 (100)
T ss_dssp CEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSH
T ss_pred ceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCH
Confidence 467886 8887753 2222 3676663322 22221 12345799999999764
No 181
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=59.98 E-value=1.5 Score=31.06 Aligned_cols=15 Identities=33% Similarity=0.363 Sum_probs=10.7
Q ss_pred cCCcccccccccccc
Q 004419 696 CKAILKCGVCFDRPK 710 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~ 710 (754)
+-..+.||+|.....
T Consensus 5 LL~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 5 FLDILVCPVTKGRLE 19 (68)
T ss_dssp SSCCCBCSSSCCBCE
T ss_pred HhhheECCCCCCcCe
Confidence 455689999976543
No 182
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=59.60 E-value=5.1 Score=30.83 Aligned_cols=42 Identities=19% Similarity=0.353 Sum_probs=25.1
Q ss_pred Cccccccccccc-ccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 698 AILKCGVCFDRP-KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 698 ~~~~C~iC~~~~-~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
..+.|++|...| .....+. .|+ ... ..+...|+.|+..|...
T Consensus 33 ~~~~C~~C~k~F~~~~~~L~-~H~------~~h-~~k~~~C~~Cgk~F~~~ 75 (96)
T 2ctd_A 33 GSVSCPTCQAVGRKTIEGLK-KHM------ENC-KQEMFTCHHCGKQLRSL 75 (96)
T ss_dssp SCEECTTTCSCEESSHHHHH-HHH------HHH-CCCCCCCSSSCCCCSSH
T ss_pred CCcCCCCCCCCcccCHHHHH-HHH------HHH-CCCCeECCCCCCeeCCH
Confidence 347899998888 5532221 121 111 22456799999999764
No 183
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=59.48 E-value=5.2 Score=29.23 Aligned_cols=14 Identities=57% Similarity=1.037 Sum_probs=10.9
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 57 ~~~C~~C~~~f~~~ 70 (82)
T 2kmk_A 57 PHKCQVCGKAFSQS 70 (82)
T ss_dssp CEECTTTSCEESSH
T ss_pred CCcCCCcchhhCCh
Confidence 45699999988764
No 184
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=59.20 E-value=65 Score=25.51 Aligned_cols=29 Identities=10% Similarity=0.240 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004419 194 AADRLSEVEEAQQDNINLSKQLENLQNEL 222 (754)
Q Consensus 194 ~~~~~~e~~~l~~~~~~~~~el~~l~~~l 222 (754)
...+...+..+...+..+...+..++..+
T Consensus 79 ~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 79 IETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555443
No 185
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=58.55 E-value=4.5 Score=33.50 Aligned_cols=10 Identities=40% Similarity=1.099 Sum_probs=4.7
Q ss_pred CccccCcCcC
Q 004419 736 KCPGCGTAFG 745 (754)
Q Consensus 736 ~Cp~C~~~~~ 745 (754)
.||.|+..|.
T Consensus 80 ~C~~C~k~F~ 89 (133)
T 2lt7_A 80 QCLACGKSFI 89 (133)
T ss_dssp EESSSCCEES
T ss_pred cCCCCCCCcC
Confidence 3555544443
No 186
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=58.49 E-value=5.9 Score=34.19 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=29.1
Q ss_pred ccccccccc-----cccceec-cC---CCcccHHHHHHHhccC-------------C-----CCccccCcCcCC
Q 004419 700 LKCGVCFDR-----PKEVVIT-KC---FHLFCNPCIQRNLEIR-------------H-----RKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~-----~~~~~~~-~C---gH~fC~~C~~~~~~~~-------------~-----~~Cp~C~~~~~~ 746 (754)
-.|+.|... |.....- .- .++.|..|-.....++ . ..||.|+.++..
T Consensus 76 K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~lr~YGIT~eey~~L~e~Qg~~~~~G~C~ICg~~~~~ 149 (200)
T 3gox_A 76 KICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSIV 149 (200)
T ss_dssp EECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHHHCSCCCHHHHHHHHTTCCCTTCEEECTTTCCEEEB
T ss_pred eECCCCCCCcchhhhcccccCCCCCcccCccChhhhhccCCcCCCHHHHHHHHHHcccCCCCCcCcCCCCCCCc
Confidence 479999542 3222222 33 4789999975332221 3 469999998874
No 187
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=58.47 E-value=1.6 Score=30.54 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=24.3
Q ss_pred cccccccccccccceeccCCCcccHHHHHH-H-hccCCCCccccCcCcCCC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQR-N-LEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~-~-~~~~~~~Cp~C~~~~~~~ 747 (754)
.+.|++|...|.....+. .|. .. . .......||.|+..|...
T Consensus 10 ~~~C~~C~k~f~~~~~l~-~H~------~~~H~~~~~~~~C~~C~k~f~~~ 53 (66)
T 2drp_A 10 TYRCKVCSRVYTHISNFC-RHY------VTSHKRNVKVYPCPFCFKEFTRK 53 (66)
T ss_dssp EEECTTTCCEESSHHHHH-HHH------HHHSSSSCCCEECTTTCCEESCH
T ss_pred ceECCCCcchhCCHHHHH-HHH------HHHcCCCCcCeECCCCCCccCCH
Confidence 478999988887543221 111 00 0 011344699999999764
No 188
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=58.30 E-value=7.3 Score=27.41 Aligned_cols=44 Identities=27% Similarity=0.527 Sum_probs=28.8
Q ss_pred ccccccccccccceec-cCCCcccHHHHHHHhccC---CCCccccCcCc
Q 004419 700 LKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIR---HRKCPGCGTAF 744 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~---~~~Cp~C~~~~ 744 (754)
-.|.||.+.=. .+.- .|...|-..|+...+... .-.||.|....
T Consensus 13 ~~C~vC~~~~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 13 ARCGVCGDGTD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCCTTTSCCTT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCcCCCCCCCe-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 57999986422 2221 788889999987555432 23699997543
No 189
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=57.42 E-value=5.3 Score=25.03 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=19.3
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhccCCCCccccC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCG 741 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~ 741 (754)
.+.|++|...|.....+. .|+ ......+...||.|+
T Consensus 10 ~~~C~~C~k~f~~~~~l~-~H~------~~H~~~~~~~C~~cg 45 (45)
T 2epq_A 10 PYSCPVCGLRFKRKDRMS-YHV------RSHDGSVGKSGPSSG 45 (45)
T ss_dssp SSEETTTTEECSCHHHHH-HHH------HHHSCCCCCCCCCCC
T ss_pred CCcCCCCCcccCCHHHHH-HHH------HHccCCCCCCCcCCC
Confidence 468888877776532221 121 112223455799985
No 190
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=57.18 E-value=66 Score=24.96 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004419 195 ADRLSEVEEAQQDNINLSKQLENLQNE 221 (754)
Q Consensus 195 ~~~~~e~~~l~~~~~~~~~el~~l~~~ 221 (754)
..+...+..+...+..+...+..++..
T Consensus 75 e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 75 ETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555443
No 191
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=56.87 E-value=6.4 Score=35.09 Aligned_cols=33 Identities=18% Similarity=0.469 Sum_probs=24.1
Q ss_pred ccccccccccccc-eeccCCCcccHHHHHHHhcc
Q 004419 700 LKCGVCFDRPKEV-VITKCFHLFCNPCIQRNLEI 732 (754)
Q Consensus 700 ~~C~iC~~~~~~~-~~~~CgH~fC~~C~~~~~~~ 732 (754)
+.|..|...+... ....=|..||..|.......
T Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~ 68 (192)
T 1b8t_A 35 FLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGP 68 (192)
T ss_dssp CBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSC
T ss_pred CcCcccCCcCCCCeeEecCCEeeChhhhHhhcCc
Confidence 6888888877653 33455788999999887653
No 192
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.61 E-value=3.6 Score=28.79 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=28.3
Q ss_pred cccccccccccccc----eeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 699 ILKCGVCFDRPKEV----VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 699 ~~~C~iC~~~~~~~----~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
...|..|.....-+ ..-.||.+||..--..- ...|+.--...+.
T Consensus 15 ~~rC~~C~kk~gL~~~egf~CrCg~~FC~~HRy~e----~H~C~fDyk~~gr 62 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPE----QHDCTFDHMGRGS 62 (67)
T ss_dssp TTBCSSSCCBCCHHHHHHHCCSSSCCCCTTTCSTG----GGTCSSCSSCSSC
T ss_pred CCcchhhCCeecccccCceEecCCCEehhccCCcc----ccCCccccccccc
Confidence 36899998776644 34489999998654321 3347765554443
No 193
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=55.64 E-value=1.9 Score=30.77 Aligned_cols=40 Identities=25% Similarity=0.200 Sum_probs=22.5
Q ss_pred cCCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCccc
Q 004419 696 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 752 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~ 752 (754)
+-..+.||+|.....-.+. ...-.||.|+..|-..|=.++
T Consensus 5 LL~iL~CP~ck~~L~~~~~-----------------~~~LiC~~cg~~YPI~dGIPv 44 (70)
T 2js4_A 5 LLDILVCPVCKGRLEFQRA-----------------QAELVCNADRLAFPVRDGVPI 44 (70)
T ss_dssp CCCCCBCTTTCCBEEEETT-----------------TTEEEETTTTEEEEEETTEEC
T ss_pred HhhheECCCCCCcCEEeCC-----------------CCEEEcCCCCceecCCCCeee
Confidence 4456899999765432110 012247777777766654333
No 194
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=54.86 E-value=4.4 Score=28.89 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=26.4
Q ss_pred cccccccccccc-ceeccCCCcccHHHHHHHhccCCCCccccCcCc
Q 004419 700 LKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 744 (754)
Q Consensus 700 ~~C~iC~~~~~~-~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~ 744 (754)
..|..|...+.- +..-.||.+||..--.. ....||.--...
T Consensus 26 nRC~~CrKkvgL~gf~CrCg~~FCs~HRy~----e~H~C~fDyk~~ 67 (74)
T 1wfl_A 26 NRCFMCRKKVGLTGFDCRCGNLFCGLHRYS----DKHNCPYDYKAE 67 (74)
T ss_dssp TBCSSSCCBCGGGCEECTTSCEECSSSCST----TTTTCCCCGGGT
T ss_pred CcChhhCCcccccCeecCCCCEechhcCCC----ccCCCcchhhhh
Confidence 589999876432 45668999999754332 244577654433
No 195
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=54.80 E-value=6 Score=21.30 Aligned_cols=14 Identities=43% Similarity=0.999 Sum_probs=10.5
Q ss_pred CCccccCcCcCCCC
Q 004419 735 RKCPGCGTAFGQSD 748 (754)
Q Consensus 735 ~~Cp~C~~~~~~~d 748 (754)
..||.|+..|....
T Consensus 3 ~~C~~C~~~f~~~~ 16 (29)
T 2m0e_A 3 HKCPHCDKKFNQVG 16 (29)
T ss_dssp CCCSSCCCCCCTTT
T ss_pred CcCCCCCcccCCHH
Confidence 46999998887643
No 196
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=54.68 E-value=5 Score=28.13 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=23.8
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
..|+.|...+...++..-|..|-..|.. |..|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~---------C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEHFV---------CAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTTCB---------CTTTCCBCSS
T ss_pred CCCcccCCEecceEEEECccccccCcCE---------ECCCCCCCCC
Confidence 4788888777666666666555444432 6666666654
No 197
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=54.29 E-value=4.5 Score=30.34 Aligned_cols=13 Identities=15% Similarity=0.623 Sum_probs=9.7
Q ss_pred ccccccccccccc
Q 004419 699 ILKCGVCFDRPKE 711 (754)
Q Consensus 699 ~~~C~iC~~~~~~ 711 (754)
.+.|++|...|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (88)
T 1llm_C 3 PFQCRICMRNFSR 15 (88)
T ss_dssp CEECTTTCCEESC
T ss_pred CCcCCCCCCccCC
Confidence 3678888887765
No 198
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=53.82 E-value=1.6 Score=30.94 Aligned_cols=40 Identities=23% Similarity=0.141 Sum_probs=22.8
Q ss_pred cCCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCccc
Q 004419 696 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 752 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~ 752 (754)
+-..+.||+|.....-.+. ...-.||.|+..|-..|=.++
T Consensus 5 LL~iL~CP~ck~~L~~~~~-----------------~~~LiC~~cg~~YPI~dGIPv 44 (68)
T 2hf1_A 5 FLEILVCPLCKGPLVFDKS-----------------KDELICKGDRLAFPIKDGIPM 44 (68)
T ss_dssp CEEECBCTTTCCBCEEETT-----------------TTEEEETTTTEEEEEETTEEC
T ss_pred HhhheECCCCCCcCeEeCC-----------------CCEEEcCCCCcEecCCCCeee
Confidence 3455899999765432110 012248888877776664444
No 199
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=53.49 E-value=58 Score=23.18 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=16.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004419 111 SHSVDQAEIQHLAGELEETMAELEESRRKLVSL 143 (754)
Q Consensus 111 ~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~l 143 (754)
....++.++..+-..++---.++.+++..+.++
T Consensus 36 ~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 36 EQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 333344444455555555555555555555544
No 200
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=53.32 E-value=25 Score=37.48 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 004419 660 RKKLEEELMEVNNKVAELTSET 681 (754)
Q Consensus 660 ~~~~~~e~~~~~~~l~~l~~~~ 681 (754)
..+++..+..++..|..+....
T Consensus 513 n~~lq~qL~~L~~el~~~r~~~ 534 (575)
T 2i1j_A 513 NERLHNQLKALKQDLARSCDET 534 (575)
T ss_dssp CHHHHHHHHHHHHHHHTTBCGG
T ss_pred hHHHHHHHHHHHHHHHHHhhhh
Confidence 3456666666666666655443
No 201
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=53.25 E-value=2.9 Score=29.64 Aligned_cols=43 Identities=21% Similarity=0.178 Sum_probs=24.7
Q ss_pred CcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 698 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
..+.|++|...|.....+. .|+. .....+...||.|+..|...
T Consensus 8 ~~~~C~~C~k~f~~~~~L~-~H~~------~H~~~~~~~C~~C~~~f~~~ 50 (70)
T 1x5w_A 8 HPEKCSECSYSCSSKAALR-IHER------IHCTDRPFKCNYCSFDTKQP 50 (70)
T ss_dssp CSEECSSSSCEESSHHHHH-HHHG------GGCCSCSEECSSSSCEESSH
T ss_pred CCeECCCCCcccCCHHHHH-HHHH------HcCCCCCEeCCCCCCccCCH
Confidence 3478999988887643331 1111 00111334699999988764
No 202
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=52.52 E-value=63 Score=23.35 Aligned_cols=35 Identities=17% Similarity=-0.010 Sum_probs=14.6
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 004419 530 LLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQA 564 (754)
Q Consensus 530 ~~~~~~~l~~~l~~l~~e~~~~~~~~~~l~~e~~~ 564 (754)
+.+++..+.-++..+..+....+..+.....++..
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~ 58 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQ 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33344444444444444444444444443333333
No 203
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=57.44 E-value=3 Score=22.12 Aligned_cols=12 Identities=50% Similarity=0.958 Sum_probs=7.9
Q ss_pred CccccCcCcCCC
Q 004419 736 KCPGCGTAFGQS 747 (754)
Q Consensus 736 ~Cp~C~~~~~~~ 747 (754)
.||.|+..|...
T Consensus 4 ~C~~C~k~f~~~ 15 (26)
T 2lvu_A 4 VCERCGKRFVQS 15 (26)
Confidence 477777777654
No 204
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=51.97 E-value=13 Score=28.12 Aligned_cols=14 Identities=36% Similarity=0.363 Sum_probs=10.6
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 64 ~~~C~~C~~~f~~~ 77 (96)
T 2dmd_A 64 PFKCQICPYASRNS 77 (96)
T ss_dssp CEECSSSSCEESSH
T ss_pred CccCCCCCCccCCH
Confidence 34699999888754
No 205
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=51.86 E-value=8.1 Score=26.70 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=28.4
Q ss_pred ccccccccccccc-ceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 699 ILKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 699 ~~~C~iC~~~~~~-~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
...|..|.....- +..-.||.+||...-.. ....||.--...+.
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~----e~H~C~fDyk~~gr 59 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMCRCGTTFCGSHRYP----EVHGCTFDFKSAGS 59 (64)
T ss_dssp CCCCTTTCCCCCTTCEECSSSCEECTTTCST----TTTTCCCCCSCCCC
T ss_pred CCcChhhCCccCccCEEeecCCEeccccCCc----ccCCCCchhhHHHH
Confidence 3689999876543 45558999999865432 24458765544443
No 206
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=51.56 E-value=2.2e+02 Score=29.26 Aligned_cols=67 Identities=9% Similarity=0.121 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 73 LSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVS 142 (754)
Q Consensus 73 l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~ 142 (754)
|+..+.+.+..+.+++.+......-.-.+.. .++.+.......+.+++.++..++.+|.....++.+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMA---SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443333222222 222233223344555555555555555554444443
No 207
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=51.33 E-value=1.2e+02 Score=26.01 Aligned_cols=49 Identities=14% Similarity=0.299 Sum_probs=22.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 004419 607 LAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELEN 655 (754)
Q Consensus 607 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~ 655 (754)
+....+.++..+..+......+...+.........+...++.+.-++-.
T Consensus 94 l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~q 142 (170)
T 3l4q_C 94 ILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQ 142 (170)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3344444444444444444444444444444444444444444444433
No 208
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=51.17 E-value=6.7 Score=21.17 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=9.6
Q ss_pred CCccccCcCcCCC
Q 004419 735 RKCPGCGTAFGQS 747 (754)
Q Consensus 735 ~~Cp~C~~~~~~~ 747 (754)
..||.|+..|...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 1ard_A 3 FVCEVCTRAFARQ 15 (29)
T ss_dssp CBCTTTCCBCSSH
T ss_pred eECCCCCcccCCH
Confidence 4688888888753
No 209
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=51.03 E-value=1.7 Score=36.28 Aligned_cols=10 Identities=40% Similarity=1.135 Sum_probs=7.8
Q ss_pred CCCccccCcC
Q 004419 734 HRKCPGCGTA 743 (754)
Q Consensus 734 ~~~Cp~C~~~ 743 (754)
...||.|+.+
T Consensus 107 ~~~CP~Cgs~ 116 (139)
T 3a43_A 107 FLACPKCGSH 116 (139)
T ss_dssp GCSCSSSSCC
T ss_pred CCcCccccCC
Confidence 3569999876
No 210
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.67 E-value=4.7 Score=28.75 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=13.3
Q ss_pred ccccccccccccceeccCCCcccHHH
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPC 725 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C 725 (754)
..|..|...+...++..-|..|...|
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C 31 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKAMNNSWHPEC 31 (70)
T ss_dssp SBCSSSCCBCCSCCEEETTEEECTTT
T ss_pred CcCccCCCEecceEEEECcccccccC
Confidence 35666666555544444444443333
No 211
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=50.57 E-value=2.9 Score=30.41 Aligned_cols=43 Identities=26% Similarity=0.601 Sum_probs=23.6
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhc-cCCCCccccCcCcCCC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLE-IRHRKCPGCGTAFGQS 747 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~-~~~~~Cp~C~~~~~~~ 747 (754)
.+.|++|...|.....+. .|+. ..... .....||.|+..|...
T Consensus 15 ~~~C~~C~k~f~~~~~L~-~H~~-----~~h~~~~~~~~C~~C~~~f~~~ 58 (77)
T 2ct1_A 15 PYECYICHARFTQSGTMK-MHIL-----QKHTENVAKFHCPHCDTVIARK 58 (77)
T ss_dssp SEECTTTCCEESCHHHHH-HHHH-----HHSSSSCSSEECSSSSCEESSH
T ss_pred CeECCCcCchhCCHHHHH-HHHH-----HhcCCCCCccCCCCCCCccCCH
Confidence 478999888886532221 1110 00001 1234699999998764
No 212
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.21 E-value=6.4 Score=28.35 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=13.0
Q ss_pred ccccccccccccceeccCCCcc
Q 004419 700 LKCGVCFDRPKEVVITKCFHLF 721 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~f 721 (754)
..|+.|...+...++..-|..|
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~w 27 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHY 27 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCB
T ss_pred CCcccCCCEecCeeEEeCCCCC
Confidence 4677777766655555545444
No 213
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=50.08 E-value=6.4 Score=28.04 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=23.4
Q ss_pred cccccc--cccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 699 ILKCGV--CFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 699 ~~~C~i--C~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
.+.|++ |...|.....+. .|. ......+...||.|+..|...
T Consensus 19 ~~~C~~~~C~k~f~~~~~l~-~H~------~~h~~~~~~~C~~C~~~f~~~ 62 (73)
T 1f2i_G 19 PYACPVESCDRRFSRSDELT-RHI------RIHTGQKPFQCRICMRNFSRS 62 (73)
T ss_dssp CEECSSTTBCCEESSHHHHH-HHH------HHHHCCCCEECTTTCCEESCH
T ss_pred ccCCcCCCCCCccCCHHHHH-HHH------HhhCCCCCeECCCCCchhCCH
Confidence 367874 877776532221 121 111122345799999999864
No 214
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=49.75 E-value=2.8 Score=29.54 Aligned_cols=15 Identities=13% Similarity=0.100 Sum_probs=10.7
Q ss_pred cCCcccccccccccc
Q 004419 696 CKAILKCGVCFDRPK 710 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~ 710 (754)
+-..+.||+|.-...
T Consensus 7 LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 7 LLEVLACPKDKGPLR 21 (67)
T ss_dssp GTCCCBCTTTCCBCE
T ss_pred HHHHhCCCCCCCcCe
Confidence 445689999976543
No 215
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=49.71 E-value=3.9 Score=28.16 Aligned_cols=11 Identities=18% Similarity=0.431 Sum_probs=7.9
Q ss_pred ccccccccccc
Q 004419 700 LKCGVCFDRPK 710 (754)
Q Consensus 700 ~~C~iC~~~~~ 710 (754)
-.||-|.....
T Consensus 7 k~CP~C~~~Ie 17 (60)
T 1wd2_A 7 KECPKCHVTIE 17 (60)
T ss_dssp CCCTTTCCCCS
T ss_pred eECcCCCCeeE
Confidence 57999976653
No 216
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=49.49 E-value=78 Score=23.52 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 004419 660 RKKLEEELMEVNN 672 (754)
Q Consensus 660 ~~~~~~e~~~~~~ 672 (754)
.-.++.+|...+.
T Consensus 65 K~~Le~EIatYRk 77 (86)
T 1x8y_A 65 KLALDMEIHAYRK 77 (86)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHH
Confidence 3344444444433
No 217
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=49.44 E-value=6.1 Score=28.12 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=7.8
Q ss_pred CCCCccccCcC
Q 004419 733 RHRKCPGCGTA 743 (754)
Q Consensus 733 ~~~~Cp~C~~~ 743 (754)
....||.|+..
T Consensus 44 d~irCp~CG~R 54 (70)
T 1twf_L 44 DAVRCKDCGHR 54 (70)
T ss_dssp STTCCSSSCCC
T ss_pred CCccCCCCCce
Confidence 34579999873
No 218
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=49.31 E-value=6.7 Score=27.13 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=29.6
Q ss_pred ccccccccccccc-ceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 699 ILKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 699 ~~~C~iC~~~~~~-~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
...|..|.....- +..-.||.+||..--.. ....||.--...+...
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~----e~H~C~fDyk~~gr~~ 61 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKCKCGSTFCGSHRYP----EKHECSFDFKEVGSGP 61 (64)
T ss_dssp SCSCTTTCCCCTTSCEECTTSCEECSSSCSS----TTTTCCCCCSCSCCCS
T ss_pred CCcChhhCCcccccCeEeecCCEecccCCCc----cccCCCcchhHHhHHH
Confidence 3689999876543 45558999999764332 2445887655554443
No 219
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.29 E-value=5.6 Score=28.84 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=25.4
Q ss_pred CcccccccccccccceeccCCCcccHHHHHHHh-ccCCCCccccCcCcCCC
Q 004419 698 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNL-EIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~-~~~~~~Cp~C~~~~~~~ 747 (754)
..+.|++|...|.....+. .|+- +.... ......||.|+..|...
T Consensus 6 k~~~C~~C~k~f~~~~~L~-~H~~----~h~~~~~~~~~~C~~C~k~f~~~ 51 (78)
T 2d9h_A 6 SGLQCEICGFTCRQKASLN-WHQR----KHAETVAALRFPCEFCGKRFEKP 51 (78)
T ss_dssp CCEECSSSCCEESSHHHHH-HHHH----HHHHHTTTCCEECTTTCCEESSH
T ss_pred cCeECCCCCCeeCCHHHHH-HHHH----HhhccCCCcccCCCCCCchhCCH
Confidence 3478999988887643331 2221 00000 12345699999988764
No 220
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=49.00 E-value=13 Score=33.15 Aligned_cols=44 Identities=23% Similarity=0.506 Sum_probs=30.9
Q ss_pred cccccccccccc-ceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~-~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
+.|..|...+.. .....=|+.||..|....+ ..+|..|+.+++.
T Consensus 143 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f---~~kc~~C~~~~g~ 187 (192)
T 1b8t_A 143 FRCAKCGKSLESTTLADKDGEIYCKGCYAKNF---GPKGFGFGQGAGA 187 (192)
T ss_dssp CBCTTTCCBCCSSSEEEETTEEEEHHHHHHHT---CCCCCCCCCCCCC
T ss_pred CCccccCCCCCCCcccccCCEEeCHHHHHHhc---CCcCCCCCCcccc
Confidence 567777666643 3444567889999998774 4579999987543
No 221
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=48.94 E-value=4.7 Score=29.19 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=24.5
Q ss_pred CcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 698 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
..+.|++|...|.....+. .|+- .....+...||.|+..|...
T Consensus 17 ~~~~C~~C~~~f~~~~~l~-~H~~------~h~~~~~~~C~~C~~~f~~~ 59 (77)
T 2cot_A 17 RRYKCDECGKSFSHSSDLS-KHRR------THTGEKPYKCDECGKAFIQR 59 (77)
T ss_dssp CSSBCSSSCCBCSCHHHHH-HHHT------TTCCSCSEECSSSCCEESSH
T ss_pred CCEECCCCCcccCCHHHHH-HHHH------HcCCCcCeeCCCCCCccCCH
Confidence 3478999988887543321 1110 00011334699999988764
No 222
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=48.74 E-value=8.3 Score=21.01 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=9.9
Q ss_pred CCccccCcCcCCC
Q 004419 735 RKCPGCGTAFGQS 747 (754)
Q Consensus 735 ~~Cp~C~~~~~~~ 747 (754)
..||.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1paa_A 3 YACGLCNRAFTRR 15 (30)
T ss_dssp SBCTTTCCBCSSS
T ss_pred cCCcccCcccCCh
Confidence 4688888888764
No 223
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=48.16 E-value=8.1 Score=31.50 Aligned_cols=40 Identities=23% Similarity=0.442 Sum_probs=22.6
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
.+.|++|...|.....+. .|.- .. .+...||.|+..|...
T Consensus 74 ~~~C~~C~k~f~~~~~l~-~H~~------~H--~~~~~C~~C~k~f~~~ 113 (129)
T 2wbt_A 74 QFVCPLCLMPFSSSVSLK-QHIR------YT--EHTKVCPVCKKEFTST 113 (129)
T ss_dssp SEECTTTCCEESSHHHHH-HHHH------HT--CCCCBCTTTCCBCSSH
T ss_pred CeECCCCCcccCCHhHHH-HHHH------HC--CCCCCCCCCCcccCCH
Confidence 467777777665432221 1110 00 2345799999999764
No 224
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.11 E-value=2.4 Score=28.57 Aligned_cols=30 Identities=20% Similarity=0.671 Sum_probs=21.5
Q ss_pred cccccccccccceeccCCCcccH-HHHHHHhc
Q 004419 701 KCGVCFDRPKEVVITKCFHLFCN-PCIQRNLE 731 (754)
Q Consensus 701 ~C~iC~~~~~~~~~~~CgH~fC~-~C~~~~~~ 731 (754)
.|.||.. +....-..|+-.||+ .|...+..
T Consensus 14 ~C~vC~~-~~kY~CPrC~~~yCSl~C~k~Hk~ 44 (56)
T 2yqq_A 14 VCVICLE-KPKYRCPACRVPYCSVVCFRKHKE 44 (56)
T ss_dssp CCTTTCS-CCSEECTTTCCEESSHHHHHHHHH
T ss_pred ccCcCcC-CCeeeCCCCCCCeeCHHHHHHHHh
Confidence 5888987 554555678888876 67777654
No 225
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.93 E-value=6.1 Score=29.92 Aligned_cols=38 Identities=11% Similarity=0.241 Sum_probs=21.9
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
..|+.|...+...++..-|+.|-..|+. |..|+.++..
T Consensus 26 ~~C~~C~~~I~~~~v~a~~~~~H~~CF~---------C~~C~~~L~~ 63 (90)
T 2dar_A 26 PMCAHCNQVIRGPFLVALGKSWHPEEFN---------CAHCKNTMAY 63 (90)
T ss_dssp CBBSSSCCBCCSCEEEETTEEECTTTCB---------CSSSCCBCSS
T ss_pred CCCccCCCEecceEEEECCccccccCCc---------cCCCCCCCCC
Confidence 4677777766665555555555444432 5556655553
No 226
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=47.47 E-value=19 Score=28.88 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=29.3
Q ss_pred Cccccccccccccc---------------ceecc---CCCcccH-HHHHHHh----ccCCCCccc--cCcCcCCCC
Q 004419 698 AILKCGVCFDRPKE---------------VVITK---CFHLFCN-PCIQRNL----EIRHRKCPG--CGTAFGQSD 748 (754)
Q Consensus 698 ~~~~C~iC~~~~~~---------------~~~~~---CgH~fC~-~C~~~~~----~~~~~~Cp~--C~~~~~~~d 748 (754)
..+.|++|...|.. |..-+ ||-.|-. .-+.... ..+...||. |+..|....
T Consensus 33 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~ 108 (124)
T 1ubd_C 33 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQST 108 (124)
T ss_dssp CCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTT
T ss_pred CCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHH
Confidence 34789999988854 11222 6666622 2222221 123457975 999998764
No 227
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=46.69 E-value=3.8 Score=28.74 Aligned_cols=12 Identities=33% Similarity=0.891 Sum_probs=10.0
Q ss_pred CCCccccCcCcC
Q 004419 734 HRKCPGCGTAFG 745 (754)
Q Consensus 734 ~~~Cp~C~~~~~ 745 (754)
.+.||+|+.+|.
T Consensus 9 ~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 9 TVNCPTCGKTVV 20 (68)
T ss_dssp EEECTTTCCEEE
T ss_pred cCcCCCCCCccc
Confidence 446999999986
No 228
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=46.55 E-value=2.4e+02 Score=28.25 Aligned_cols=42 Identities=7% Similarity=0.094 Sum_probs=26.1
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004419 20 ILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFH 61 (754)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 61 (754)
.+...+..+..++..+++.+..+.........-+..+...+.
T Consensus 55 lL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk 96 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILK 96 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 456677788888888888877776555544443333333333
No 229
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=46.54 E-value=2.8 Score=29.77 Aligned_cols=40 Identities=25% Similarity=0.251 Sum_probs=22.1
Q ss_pred cCCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCccc
Q 004419 696 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 752 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~ 752 (754)
+-..+.||+|.....-.+ . ...-.||.|+..|-..|=.++
T Consensus 5 LLeiL~CP~ck~~L~~~~--~---------------~~~LiC~~cg~~YPI~dGIPv 44 (69)
T 2pk7_A 5 LLDILACPICKGPLKLSA--D---------------KTELISKGAGLAYPIRDGIPV 44 (69)
T ss_dssp GGGTCCCTTTCCCCEECT--T---------------SSEEEETTTTEEEEEETTEEC
T ss_pred HHhheeCCCCCCcCeEeC--C---------------CCEEEcCCCCcEecCcCCeee
Confidence 345589999975543110 0 012247777777766654343
No 230
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=46.13 E-value=8.4 Score=22.55 Aligned_cols=14 Identities=36% Similarity=0.952 Sum_probs=10.7
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 11 ~~~C~~C~k~f~~~ 24 (37)
T 1p7a_A 11 PFQCPDCDRSFSRS 24 (37)
T ss_dssp SBCCTTTCCCBSSH
T ss_pred CccCCCCCcccCcH
Confidence 45699999988764
No 231
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=45.98 E-value=7.8 Score=29.84 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=17.7
Q ss_pred cccccccccccc-ceecc--CCCccc
Q 004419 700 LKCGVCFDRPKE-VVITK--CFHLFC 722 (754)
Q Consensus 700 ~~C~iC~~~~~~-~~~~~--CgH~fC 722 (754)
..|..|...-.+ .+-+. |||++|
T Consensus 26 ~~C~~C~~~~~~lw~CL~~~Cg~vgC 51 (97)
T 2uzg_A 26 GTCQDCKVQGPNLWACLENRCSYVGC 51 (97)
T ss_dssp TCCSSSCCCCSSCEEECCTTCCCEEC
T ss_pred CcCcCcCCCCCCceeeecccCCCccc
Confidence 589999843333 67778 999999
No 232
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=45.91 E-value=7.7 Score=20.46 Aligned_cols=12 Identities=33% Similarity=0.717 Sum_probs=9.2
Q ss_pred CccccCcCcCCC
Q 004419 736 KCPGCGTAFGQS 747 (754)
Q Consensus 736 ~Cp~C~~~~~~~ 747 (754)
.||.|+..|...
T Consensus 3 ~C~~C~k~f~~~ 14 (27)
T 1znf_A 3 KCGLCERSFVEK 14 (27)
T ss_dssp BCSSSCCBCSSH
T ss_pred cCCCCCCcCCCH
Confidence 588888888754
No 233
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=45.85 E-value=10 Score=20.45 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=9.8
Q ss_pred CCccccCcCcCCC
Q 004419 735 RKCPGCGTAFGQS 747 (754)
Q Consensus 735 ~~Cp~C~~~~~~~ 747 (754)
..||.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1klr_A 3 YQCQYCEFRSADS 15 (30)
T ss_dssp CCCSSSSCCCSCS
T ss_pred ccCCCCCCccCCH
Confidence 3688888888764
No 234
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.68 E-value=7.5 Score=27.77 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=12.8
Q ss_pred ccccccccccc--cceeccCCCcccH
Q 004419 700 LKCGVCFDRPK--EVVITKCFHLFCN 723 (754)
Q Consensus 700 ~~C~iC~~~~~--~~~~~~CgH~fC~ 723 (754)
..|+.|...+. ..++..-|+.|-.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~ 31 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHE 31 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEET
T ss_pred CCCccCCCccccCccEEEECccccCc
Confidence 35677766655 3455544544433
No 235
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=45.67 E-value=83 Score=22.75 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=20.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 004419 89 EVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEES 136 (754)
Q Consensus 89 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~ 136 (754)
.++..++-+..++..+...++.++.....++..+..++..-..++..+
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL 73 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 333334444444444444444444444444444444444444443333
No 236
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=45.11 E-value=12 Score=26.61 Aligned_cols=44 Identities=14% Similarity=0.230 Sum_probs=28.8
Q ss_pred cccccccccccc-ceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 700 LKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 700 ~~C~iC~~~~~~-~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
..|..|.....- +..-.||.+||..--.. ....||.--...+..
T Consensus 26 ~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~----e~H~C~fDyk~~gr~ 70 (74)
T 1wfp_A 26 TRCLSCNKKVGVTGFKCRCGSTFCGTHRYP----ESHECQFDFKGVASG 70 (74)
T ss_dssp CBCSSSCCBCTTTCEECTTSCEECTTTCST----TTSCCCSCTTSCCCC
T ss_pred ccchhhcCcccccceEeccCCEeccccCCC----cCCCCcCchhHHhHH
Confidence 689999766443 45558999999865432 244588765555443
No 237
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=45.01 E-value=5.1 Score=29.59 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=15.0
Q ss_pred cHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 722 CNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 722 C~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
|.+|.. ..+|..|-.+|..++
T Consensus 24 C~~C~~------d~tcvlC~~CF~~s~ 44 (82)
T 3nis_A 24 CHECGC------DDTCVLCIHCFNPKD 44 (82)
T ss_dssp ETTTBS------STTCCBCTTTCCGGG
T ss_pred eeccCC------CCCceEchhhCCCCC
Confidence 777754 446888888888765
No 238
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=44.97 E-value=7.7 Score=28.15 Aligned_cols=49 Identities=18% Similarity=0.414 Sum_probs=31.0
Q ss_pred cccccccccccccceec---cCCCcccHHHHHHHhcc---CCCCccccCcCcCCC
Q 004419 699 ILKCGVCFDRPKEVVIT---KCFHLFCNPCIQRNLEI---RHRKCPGCGTAFGQS 747 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~---~CgH~fC~~C~~~~~~~---~~~~Cp~C~~~~~~~ 747 (754)
...|++|.........+ .|..-|-..|+.-.... ..-.||.|...+...
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 35799998776442223 67767777787644332 234699998766543
No 239
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.59 E-value=6 Score=29.19 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=15.4
Q ss_pred ccccccccccccceeccCCCcccHH
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNP 724 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~ 724 (754)
..|+.|...+...++..-|..|...
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~ 40 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPD 40 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTT
T ss_pred CcCccccCEeccceEEECCceeCcc
Confidence 3788888777665555555544333
No 240
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=44.14 E-value=17 Score=28.82 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=8.6
Q ss_pred ccccc--cccccccc
Q 004419 699 ILKCG--VCFDRPKE 711 (754)
Q Consensus 699 ~~~C~--iC~~~~~~ 711 (754)
.+.|+ +|...|..
T Consensus 36 ~~~C~~~~C~~~f~~ 50 (119)
T 2jp9_A 36 PYQCDFKDCERRFSR 50 (119)
T ss_dssp CEECCSTTCCCEESS
T ss_pred CccCCCCCCcCccCC
Confidence 46777 57777754
No 241
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.09 E-value=7.9 Score=28.49 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=19.4
Q ss_pred cccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 701 KCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 701 ~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
.|+.|...+...++..-|..|-..|.. |..|+.++.
T Consensus 17 ~C~~C~~~I~~~~~~a~~~~~H~~CF~---------C~~C~~~L~ 52 (81)
T 1x6a_A 17 FCHGCSLLMTGPFMVAGEFKYHPECFA---------CMSCKVIIE 52 (81)
T ss_dssp BCTTTCCBCCSCCBCCTTCCBCTTSCB---------CTTTCCBCC
T ss_pred cCccCCCCcCceEEEECCceeccccCC---------ccCCCCccC
Confidence 577776666555555445444333332 555655554
No 242
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=43.93 E-value=6.1 Score=21.03 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=9.2
Q ss_pred CCccccCcCcCCC
Q 004419 735 RKCPGCGTAFGQS 747 (754)
Q Consensus 735 ~~Cp~C~~~~~~~ 747 (754)
..||.|+..|...
T Consensus 4 ~~C~~C~k~f~~~ 16 (27)
T 2kvh_A 4 FSCSLCPQRSRDF 16 (27)
T ss_dssp EECSSSSCEESSH
T ss_pred ccCCCcChhhCCH
Confidence 3588888887653
No 243
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.98 E-value=9 Score=28.08 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=15.1
Q ss_pred ccccccccccccceeccCCCcccHHH
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPC 725 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C 725 (754)
..|+.|...+...++..-|..|-..|
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C 41 (79)
T 2cor_A 16 YICQKCHAIIDEQPLIFKNDPYHPDH 41 (79)
T ss_dssp CBCTTTCCBCCSCCCCCSSSCCCTTT
T ss_pred CCCccCCCEecceEEEECcceeCCCC
Confidence 46788877666655555554443333
No 244
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=42.95 E-value=1.8 Score=22.28 Aligned_cols=11 Identities=36% Similarity=0.975 Sum_probs=7.7
Q ss_pred cccHHHHHHHh
Q 004419 720 LFCNPCIQRNL 730 (754)
Q Consensus 720 ~fC~~C~~~~~ 730 (754)
.||.+|...|+
T Consensus 6 ffcetcskpwl 16 (26)
T 1loi_A 6 FFCETCSKPWL 16 (26)
T ss_dssp HHHHTSSCTTG
T ss_pred HHHHhcCCchh
Confidence 57888877654
No 245
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=42.89 E-value=6.1 Score=21.20 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=9.3
Q ss_pred CCccccCcCcCCC
Q 004419 735 RKCPGCGTAFGQS 747 (754)
Q Consensus 735 ~~Cp~C~~~~~~~ 747 (754)
..||.|+..|...
T Consensus 4 ~~C~~C~k~f~~~ 16 (28)
T 2kvf_A 4 YSCSVCGKRFSLK 16 (28)
T ss_dssp EECSSSCCEESCH
T ss_pred ccCCCCCcccCCH
Confidence 3588888887753
No 246
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=42.77 E-value=1.2e+02 Score=23.77 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 004419 662 KLEEELMEVNNKVAELTSET 681 (754)
Q Consensus 662 ~~~~e~~~~~~~l~~l~~~~ 681 (754)
++......+..++.+|...|
T Consensus 81 ~Lt~~Re~V~~eL~rLQ~eN 100 (112)
T 1x79_B 81 VLMQSREQVSEELVRLQKDN 100 (112)
T ss_dssp HHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 33333344444444444444
No 247
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=42.75 E-value=1.7 Score=31.94 Aligned_cols=6 Identities=50% Similarity=1.126 Sum_probs=4.1
Q ss_pred CccccC
Q 004419 736 KCPGCG 741 (754)
Q Consensus 736 ~Cp~C~ 741 (754)
+||+|+
T Consensus 57 kC~~C~ 62 (79)
T 2k2d_A 57 KCKICE 62 (79)
T ss_dssp CCTTTS
T ss_pred cCcCCC
Confidence 577776
No 248
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.78 E-value=9.9 Score=27.32 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=24.7
Q ss_pred ccccccccccc--cceeccCCCcccHHHHHHHhcc
Q 004419 700 LKCGVCFDRPK--EVVITKCFHLFCNPCIQRNLEI 732 (754)
Q Consensus 700 ~~C~iC~~~~~--~~~~~~CgH~fC~~C~~~~~~~ 732 (754)
+.|..|...+. ......=|..||..|.......
T Consensus 32 F~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 32 ALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp SCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSS
T ss_pred CEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcc
Confidence 68999988886 3445566889999998876543
No 249
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.41 E-value=7.1 Score=27.62 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=5.3
Q ss_pred ccccccccccc
Q 004419 701 KCGVCFDRPKE 711 (754)
Q Consensus 701 ~C~iC~~~~~~ 711 (754)
.|+.|...+..
T Consensus 7 ~C~~C~~~I~~ 17 (69)
T 2cur_A 7 GCVKCNKAITS 17 (69)
T ss_dssp CCSSSCCCCCT
T ss_pred CCcccCCEeCc
Confidence 45555544433
No 250
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=41.21 E-value=10 Score=28.28 Aligned_cols=14 Identities=36% Similarity=0.721 Sum_probs=10.9
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 62 ~~~C~~C~~~f~~~ 75 (90)
T 1a1h_A 62 PFACDICGRKFARS 75 (90)
T ss_dssp CEECTTTCCEESSH
T ss_pred CccCCCCCchhCCH
Confidence 45699999988764
No 251
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=41.17 E-value=13 Score=21.18 Aligned_cols=13 Identities=38% Similarity=0.802 Sum_probs=9.9
Q ss_pred CCccccCcCcCCC
Q 004419 735 RKCPGCGTAFGQS 747 (754)
Q Consensus 735 ~~Cp~C~~~~~~~ 747 (754)
..||.|+..|...
T Consensus 3 ~~C~~C~k~F~~~ 15 (33)
T 1rim_A 3 FACPECPKRFMRS 15 (33)
T ss_dssp CCCSSSCCCCSSH
T ss_pred ccCCCCCchhCCH
Confidence 3689998888754
No 252
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.55 E-value=12 Score=26.50 Aligned_cols=19 Identities=16% Similarity=0.052 Sum_probs=8.5
Q ss_pred cccccccccccceeccCCC
Q 004419 701 KCGVCFDRPKEVVITKCFH 719 (754)
Q Consensus 701 ~C~iC~~~~~~~~~~~CgH 719 (754)
.|+.|...+....+..-|.
T Consensus 7 ~C~~C~~~I~~~~~~a~~~ 25 (70)
T 2d8z_A 7 GCVQCKKPITTGGVTYREQ 25 (70)
T ss_dssp BCSSSCCBCCSSEEESSSS
T ss_pred CCcccCCeeccceEEECcc
Confidence 4555555444433333333
No 253
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=40.52 E-value=1.7 Score=31.96 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=10.0
Q ss_pred CCCccccCcCcCCCC
Q 004419 734 HRKCPGCGTAFGQSD 748 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~d 748 (754)
...||.|+..+-..+
T Consensus 36 ~~~C~~CGE~~~~~e 50 (78)
T 3ga8_A 36 GLYCVHCEESIMNKE 50 (78)
T ss_dssp EEEETTTCCEECCHH
T ss_pred eEECCCCCCEEECHH
Confidence 446999987765443
No 254
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=40.24 E-value=7.2 Score=20.98 Aligned_cols=11 Identities=45% Similarity=1.117 Sum_probs=8.2
Q ss_pred CccccCcCcCC
Q 004419 736 KCPGCGTAFGQ 746 (754)
Q Consensus 736 ~Cp~C~~~~~~ 746 (754)
.||.|+..|..
T Consensus 4 ~C~~C~k~f~~ 14 (29)
T 2m0f_A 4 KCRECGKQFTT 14 (29)
T ss_dssp ECTTTSCEESC
T ss_pred cCCCCCCccCC
Confidence 58888877764
No 255
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=40.07 E-value=1.1e+02 Score=22.56 Aligned_cols=12 Identities=17% Similarity=0.008 Sum_probs=4.4
Q ss_pred HHHHHHHHhhhh
Q 004419 537 RDDLNIKLVSES 548 (754)
Q Consensus 537 l~~~l~~l~~e~ 548 (754)
++..+..+..+.
T Consensus 38 lE~eL~~~r~e~ 49 (84)
T 1gk4_A 38 LQDEIQNMKEEM 49 (84)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 256
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=39.98 E-value=8.8 Score=20.67 Aligned_cols=12 Identities=42% Similarity=0.957 Sum_probs=8.9
Q ss_pred CccccCcCcCCC
Q 004419 736 KCPGCGTAFGQS 747 (754)
Q Consensus 736 ~Cp~C~~~~~~~ 747 (754)
.||.|+..|...
T Consensus 4 ~C~~C~k~f~~~ 15 (29)
T 1rik_A 4 ACPECPKRFMRS 15 (29)
T ss_dssp ECSSSSCEESCS
T ss_pred cCCCCCchhCCH
Confidence 588888887654
No 257
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=39.45 E-value=9.7 Score=31.06 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=18.6
Q ss_pred ccccccccccccceeccCCCccc
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFC 722 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC 722 (754)
..|..|...-.-.+-+.|||+.|
T Consensus 35 ~~C~~C~~~~~LwlCL~CG~vgC 57 (129)
T 2g45_A 35 WKCSKCDMRENLWLNLTDGSILC 57 (129)
T ss_dssp CCCSSSSCCSSEEEETTTCCEEE
T ss_pred CcCccccCcCceEEeccCCcccc
Confidence 47999977666678889999987
No 258
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=39.41 E-value=6 Score=21.17 Aligned_cols=13 Identities=23% Similarity=0.588 Sum_probs=8.9
Q ss_pred CCccccCcCcCCC
Q 004419 735 RKCPGCGTAFGQS 747 (754)
Q Consensus 735 ~~Cp~C~~~~~~~ 747 (754)
..||.|+..|...
T Consensus 4 ~~C~~C~k~f~~~ 16 (27)
T 2kvg_A 4 YRCPLCRAGCPSL 16 (27)
T ss_dssp EEETTTTEEESCH
T ss_pred cCCCCCCcccCCH
Confidence 3588888777653
No 259
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=39.10 E-value=93 Score=21.43 Aligned_cols=43 Identities=16% Similarity=0.003 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 004419 503 DREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLV 545 (754)
Q Consensus 503 ~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 545 (754)
+.++..|..-+..+...+..+..-...+..+....+..+..+.
T Consensus 16 q~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 16 QNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3344444444444444433333333333333333333333333
No 260
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.05 E-value=13 Score=21.47 Aligned_cols=14 Identities=29% Similarity=0.702 Sum_probs=10.2
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (36)
T 2elr_A 9 THLCDMCGKKFKSK 22 (36)
T ss_dssp SCBCTTTCCBCSSH
T ss_pred CeecCcCCCCcCch
Confidence 34688888888753
No 261
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=38.26 E-value=11 Score=28.30 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=22.3
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
..|..|...+...++..-|..|-..|+. |-.|+.++..
T Consensus 26 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~---------C~~C~~~L~~ 63 (89)
T 1x64_A 26 PLCDKCGSGIVGAVVKARDKYRHPECFV---------CADCNLNLKQ 63 (89)
T ss_dssp CBCTTTCCBCCSCCEESSSCEECTTTCC---------CSSSCCCTTT
T ss_pred CCcccCCCEecccEEEECCceECccCCE---------ecCCCCCCCC
Confidence 5788887776665555555555444332 5556665554
No 262
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=37.94 E-value=3.2e+02 Score=27.33 Aligned_cols=15 Identities=20% Similarity=0.064 Sum_probs=0.0
Q ss_pred ccccccccee-ccCCC
Q 004419 705 CFDRPKEVVI-TKCFH 719 (754)
Q Consensus 705 C~~~~~~~~~-~~CgH 719 (754)
|....+.+|+ .|=||
T Consensus 292 CsKTitKtVi~gpDG~ 307 (491)
T 1m1j_A 292 CTRTVTKKVISGPDGP 307 (491)
T ss_dssp ----------------
T ss_pred eeeeEEeEEecCCCCC
Confidence 7777776666 56565
No 263
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.69 E-value=18 Score=22.50 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=10.3
Q ss_pred cccccccccccccc
Q 004419 699 ILKCGVCFDRPKEV 712 (754)
Q Consensus 699 ~~~C~iC~~~~~~~ 712 (754)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2emh_A 12 PYICTVCGKAFTDR 25 (46)
T ss_dssp SEECTTTCCEESSH
T ss_pred CcCCCCCCchhCCH
Confidence 46788888877754
No 264
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=37.60 E-value=14 Score=24.16 Aligned_cols=43 Identities=28% Similarity=0.668 Sum_probs=25.1
Q ss_pred ccccccccccc-ceec--cCCCcccHHHHHHHhcc---CCCCccccCcC
Q 004419 701 KCGVCFDRPKE-VVIT--KCFHLFCNPCIQRNLEI---RHRKCPGCGTA 743 (754)
Q Consensus 701 ~C~iC~~~~~~-~~~~--~CgH~fC~~C~~~~~~~---~~~~Cp~C~~~ 743 (754)
.|.||...-.. ..+. .|...|-..|+...+.. +.-.||.|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 48888765322 2222 67777777788643332 23359999753
No 265
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=37.52 E-value=18 Score=28.95 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=10.0
Q ss_pred CCccccCcCcCCC
Q 004419 735 RKCPGCGTAFGQS 747 (754)
Q Consensus 735 ~~Cp~C~~~~~~~ 747 (754)
..||.|+..|...
T Consensus 67 ~~C~~C~~~f~~~ 79 (124)
T 2dlq_A 67 FTCSVCQETFRRR 79 (124)
T ss_dssp EECSSSCCEESSH
T ss_pred eECCCCCCccCCH
Confidence 3599999888764
No 266
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=37.42 E-value=11 Score=28.33 Aligned_cols=53 Identities=17% Similarity=0.323 Sum_probs=31.5
Q ss_pred CCccccccccccc--ccceec---cCCCcccHHHHHHHh-ccCCCCccccCcCcCCCCC
Q 004419 697 KAILKCGVCFDRP--KEVVIT---KCFHLFCNPCIQRNL-EIRHRKCPGCGTAFGQSDV 749 (754)
Q Consensus 697 ~~~~~C~iC~~~~--~~~~~~---~CgH~fC~~C~~~~~-~~~~~~Cp~C~~~~~~~d~ 749 (754)
.....|.||...- ....++ .|.-.|-..|+.-.. ..+.-.||.|.......++
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC-
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhh
Confidence 3457899998753 222222 666667677776331 1123469999877766654
No 267
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=37.37 E-value=11 Score=24.03 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=11.0
Q ss_pred Ccccccccccccccc
Q 004419 698 AILKCGVCFDRPKEV 712 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~ 712 (754)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (48)
T 2epr_A 11 KQVACEICGKIFRDV 25 (48)
T ss_dssp CSEEETTTTEEESSH
T ss_pred cCeeCCCCCcccCCH
Confidence 347899888888754
No 268
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=37.35 E-value=15 Score=40.76 Aligned_cols=24 Identities=29% Similarity=0.841 Sum_probs=18.1
Q ss_pred ccHHHHHHHhccCCC-------CccccCcCc
Q 004419 721 FCNPCIQRNLEIRHR-------KCPGCGTAF 744 (754)
Q Consensus 721 fC~~C~~~~~~~~~~-------~Cp~C~~~~ 744 (754)
.|..|-..+.+...| -||.|+..+
T Consensus 158 mC~~C~~EY~dp~dRRfhAqp~aC~~CGP~l 188 (772)
T 4g9i_A 158 MCDFCRSEYEDPLNRRYHAEPTACPVCGPSY 188 (772)
T ss_dssp CCHHHHHHHHCSSSTTTTCTTCCCTTTSCCE
T ss_pred CChhHHHHhCCCCCCCCcCCCCCCccCCceE
Confidence 499999988764333 499999764
No 269
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.28 E-value=10 Score=27.51 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=12.1
Q ss_pred ccccccccccc-cceeccCCCccc
Q 004419 700 LKCGVCFDRPK-EVVITKCFHLFC 722 (754)
Q Consensus 700 ~~C~iC~~~~~-~~~~~~CgH~fC 722 (754)
..|+.|...+. ...+..-|..|-
T Consensus 10 ~~C~~C~~~I~~~~~v~a~~~~~H 33 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSSLGKDWH 33 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEE
T ss_pred CCCcCCCCEeECCeEEEECCeEee
Confidence 46777766655 334444444443
No 270
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=37.18 E-value=12 Score=27.55 Aligned_cols=41 Identities=22% Similarity=0.474 Sum_probs=18.1
Q ss_pred ccccccccccccc-eeccCCCcccHHHHHHHhccCCCCccccCcC
Q 004419 700 LKCGVCFDRPKEV-VITKCFHLFCNPCIQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 700 ~~C~iC~~~~~~~-~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~ 743 (754)
+.|..|...+... ....=|..||..|..... .++|-.|+..
T Consensus 35 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f---~~~c~gcg~g 76 (81)
T 1a7i_A 35 FLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKY---GPKGYGYGQG 76 (81)
T ss_dssp EECSSSCCEECSSCCEEETTEEECSHHHHHHC---C---------
T ss_pred CccCCCCCCCCCCCeEeeCCEEECHHHHHHHh---CCcccccCCc
Confidence 4666666555432 233456677777776552 3456666543
No 271
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=36.85 E-value=10 Score=33.60 Aligned_cols=25 Identities=20% Similarity=0.370 Sum_probs=20.4
Q ss_pred CcccccccccccccceeccCCCcccHHHHH
Q 004419 698 AILKCGVCFDRPKEVVITKCFHLFCNPCIQ 727 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~ 727 (754)
....|++|++.+-.+ |..+|.+|..
T Consensus 162 ~~~~C~~CGE~~~~~-----g~~~C~~C~~ 186 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ-----DGELCLSCQG 186 (191)
T ss_dssp CEEECTTTCCEEEGG-----GCSSCHHHHT
T ss_pred CCEECCcCCCChhhC-----CCcCCccccC
Confidence 346799999988776 8899999974
No 272
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=36.74 E-value=19 Score=29.20 Aligned_cols=27 Identities=11% Similarity=0.364 Sum_probs=16.7
Q ss_pred ccccccccccccc-eeccCCCcccHHHH
Q 004419 700 LKCGVCFDRPKEV-VITKCFHLFCNPCI 726 (754)
Q Consensus 700 ~~C~iC~~~~~~~-~~~~CgH~fC~~C~ 726 (754)
..|..|....... ++...|..|-..|+
T Consensus 62 ~~C~~C~~~I~~~~~v~a~~~~wH~~CF 89 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYAMDSYWHSRCL 89 (123)
T ss_dssp SBBSSSSSBCCSSSEEEETTEEEETTTS
T ss_pred CcCcCCCCCcCCcEEEEeCCcEEccccc
Confidence 5899998877665 35555555433333
No 273
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.59 E-value=18 Score=22.43 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=10.1
Q ss_pred cccccccccccccc
Q 004419 699 ILKCGVCFDRPKEV 712 (754)
Q Consensus 699 ~~~C~iC~~~~~~~ 712 (754)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2emp_A 12 PYMCNECGKAFSVY 25 (46)
T ss_dssp SEECSSSCCEESCH
T ss_pred CeECCCCCchhCCH
Confidence 36788888777654
No 274
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=36.49 E-value=15 Score=34.26 Aligned_cols=33 Identities=15% Similarity=0.350 Sum_probs=18.3
Q ss_pred eccCCCcccHHHHHHHhcc-CCCCccccCcCcCC
Q 004419 714 ITKCFHLFCNPCIQRNLEI-RHRKCPGCGTAFGQ 746 (754)
Q Consensus 714 ~~~CgH~fC~~C~~~~~~~-~~~~Cp~C~~~~~~ 746 (754)
.+.||+.|-..=+...... ..+.||.|+..+.+
T Consensus 124 C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP 157 (246)
T 1yc5_A 124 CVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRP 157 (246)
T ss_dssp ETTTCCEEEHHHHHHHTTTCSSCBCTTTCCBEEE
T ss_pred cCCCCCCCcHHHHHHHhccCCCCCCCCCCCccCc
Confidence 3467777643322222221 35689999976544
No 275
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=36.46 E-value=3.9 Score=29.64 Aligned_cols=9 Identities=22% Similarity=0.833 Sum_probs=4.9
Q ss_pred cccHHHHHH
Q 004419 720 LFCNPCIQR 728 (754)
Q Consensus 720 ~fC~~C~~~ 728 (754)
.+|..|+..
T Consensus 30 ~lC~~CF~~ 38 (75)
T 3ny3_A 30 VLCMECFLG 38 (75)
T ss_dssp CBCHHHHHT
T ss_pred eEChHHCCC
Confidence 455555554
No 276
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=36.27 E-value=15 Score=39.51 Aligned_cols=24 Identities=29% Similarity=0.802 Sum_probs=18.3
Q ss_pred ccHHHHHHHhccCCC-------CccccCcCc
Q 004419 721 FCNPCIQRNLEIRHR-------KCPGCGTAF 744 (754)
Q Consensus 721 fC~~C~~~~~~~~~~-------~Cp~C~~~~ 744 (754)
.|..|-..+.+-..| -||.|+..+
T Consensus 69 mC~~C~~EY~dp~dRRfHAqp~aCp~CGP~l 99 (657)
T 3ttc_A 69 LCPACDKEYRDPLDRRFHAQPVACPECGPYL 99 (657)
T ss_dssp CCHHHHHHHHCTTSTTTTCTTCCCTTTSCCE
T ss_pred CChHHHHHhCCCCCCcCcCCCCcCcccCccc
Confidence 499999998764322 499999876
No 277
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=36.14 E-value=16 Score=37.25 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=23.9
Q ss_pred CCccccccccccccc-----ceeccCCCcccHHHHHHH
Q 004419 697 KAILKCGVCFDRPKE-----VVITKCFHLFCNPCIQRN 729 (754)
Q Consensus 697 ~~~~~C~iC~~~~~~-----~~~~~CgH~fC~~C~~~~ 729 (754)
.....|.+|...|.. .....||..+|..|....
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~ 392 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRV 392 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGS
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhC
Confidence 344689999887642 233479999999999853
No 278
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.08 E-value=3.6 Score=29.89 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=12.4
Q ss_pred CCCCccccCcCcCCCCC
Q 004419 733 RHRKCPGCGTAFGQSDV 749 (754)
Q Consensus 733 ~~~~Cp~C~~~~~~~d~ 749 (754)
+...||.|+..|...++
T Consensus 42 ~~~~C~~C~~~~~~~~l 58 (75)
T 2d9k_A 42 RTELCGNCGRNVLVKDL 58 (75)
T ss_dssp CEEECSSSCCEEETTGG
T ss_pred CceEcccCCCcCcHHHH
Confidence 45569999988876554
No 279
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=42.29 E-value=7.6 Score=21.03 Aligned_cols=12 Identities=50% Similarity=1.054 Sum_probs=9.1
Q ss_pred CccccCcCcCCC
Q 004419 736 KCPGCGTAFGQS 747 (754)
Q Consensus 736 ~Cp~C~~~~~~~ 747 (754)
.||.|+..|...
T Consensus 4 ~C~~C~k~f~~~ 15 (29)
T 2lvt_A 4 QCVMCGKAFTQA 15 (29)
Confidence 588888888754
No 280
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=42.27 E-value=7.6 Score=21.15 Aligned_cols=11 Identities=27% Similarity=0.736 Sum_probs=6.5
Q ss_pred CccccCcCcCC
Q 004419 736 KCPGCGTAFGQ 746 (754)
Q Consensus 736 ~Cp~C~~~~~~ 746 (754)
.||.|+..|..
T Consensus 5 ~C~~C~k~f~~ 15 (30)
T 2lvr_A 5 VCIHCQRQFAD 15 (30)
Confidence 46666666654
No 281
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.85 E-value=40 Score=25.28 Aligned_cols=30 Identities=13% Similarity=0.469 Sum_probs=15.8
Q ss_pred cccccccccccc-ceeccCCCcccHHHHHHH
Q 004419 700 LKCGVCFDRPKE-VVITKCFHLFCNPCIQRN 729 (754)
Q Consensus 700 ~~C~iC~~~~~~-~~~~~CgH~fC~~C~~~~ 729 (754)
+.|..|...+.. +....=|..||..|....
T Consensus 43 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 73 (91)
T 2d8y_A 43 FRCSYCNNKLSLGTYASLHGRIYCKPHFNQL 73 (91)
T ss_dssp CBCTTTCCBCCTTTCCCSSSCCCCHHHHHHH
T ss_pred CeeCCCCCCCCCCCcEeECCEEECHHHHHHH
Confidence 455556555543 223344556666666554
No 282
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=35.48 E-value=11 Score=29.11 Aligned_cols=42 Identities=17% Similarity=0.360 Sum_probs=23.9
Q ss_pred ccccccccccccceec---cCCCcccHHHHHHHhcc--CCCCccccCc
Q 004419 700 LKCGVCFDRPKEVVIT---KCFHLFCNPCIQRNLEI--RHRKCPGCGT 742 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~---~CgH~fC~~C~~~~~~~--~~~~Cp~C~~ 742 (754)
..| ||.........+ .|..-|-..|+.-.... ..-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 567 897766543344 56555555555432221 1346999974
No 283
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=35.41 E-value=26 Score=27.24 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=10.1
Q ss_pred CCccccCcCcCCC
Q 004419 735 RKCPGCGTAFGQS 747 (754)
Q Consensus 735 ~~Cp~C~~~~~~~ 747 (754)
..||.|+..|...
T Consensus 66 ~~C~~C~~~f~~~ 78 (110)
T 2csh_A 66 YECNICAKRFMWR 78 (110)
T ss_dssp EECSSSCCEESCH
T ss_pred eeCCCCcchhcCH
Confidence 3699999988754
No 284
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=35.34 E-value=23 Score=25.71 Aligned_cols=14 Identities=7% Similarity=-0.126 Sum_probs=10.7
Q ss_pred eccCCCcccHHHHH
Q 004419 714 ITKCFHLFCNPCIQ 727 (754)
Q Consensus 714 ~~~CgH~fC~~C~~ 727 (754)
.++|..-||..|..
T Consensus 19 ~T~C~~CyCKkCc~ 32 (86)
T 1tac_A 19 KTASNRAHAKKSAY 32 (86)
T ss_dssp TTCSSCSSTTTTTT
T ss_pred CCCCCCceecchhh
Confidence 45799889988844
No 285
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=35.03 E-value=16 Score=21.02 Aligned_cols=14 Identities=21% Similarity=0.636 Sum_probs=10.6
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
..+||.|+.++-+.
T Consensus 3 ~~~C~~C~k~Vy~~ 16 (31)
T 1zfo_A 3 NPNCARCGKIVYPT 16 (31)
T ss_dssp CCBCSSSCSBCCGG
T ss_pred CCcCCccCCEEecc
Confidence 45799999887543
No 286
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.92 E-value=11 Score=22.09 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=10.2
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (37)
T 2elp_A 9 AMKCPYCDFYFMKN 22 (37)
T ss_dssp CEECSSSSCEECSS
T ss_pred CeECCCCChhhccC
Confidence 34688888888764
No 287
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=34.73 E-value=10 Score=30.81 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=17.6
Q ss_pred ccccccccc--------------cccceeccCCCccc
Q 004419 700 LKCGVCFDR--------------PKEVVITKCFHLFC 722 (754)
Q Consensus 700 ~~C~iC~~~--------------~~~~~~~~CgH~fC 722 (754)
..|+.|... ..-.+-+.|||+.|
T Consensus 29 ~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgC 65 (126)
T 2i50_A 29 NICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGC 65 (126)
T ss_dssp SSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEE
T ss_pred CcCccccccccccccccccccccccceeeeeCCcccc
Confidence 579999752 33467789999998
No 288
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=34.72 E-value=5.3 Score=22.82 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=17.2
Q ss_pred ccCCCcccHHHHHHHhcc--CCCCccccCc
Q 004419 715 TKCFHLFCNPCIQRNLEI--RHRKCPGCGT 742 (754)
Q Consensus 715 ~~CgH~fC~~C~~~~~~~--~~~~Cp~C~~ 742 (754)
..|-|+.|..|--...-. +...-|.|+-
T Consensus 10 ascehtmcgycqgplymtcigittdpecgl 39 (40)
T 1erd_A 10 ASCEHTMCGYCQGPLYMTCIGITTDPECGL 39 (40)
T ss_dssp HHTCGGGGGGSCHHHHHHHHHHHTCTTTTC
T ss_pred HhccccccccccCCeeEEEEeeccCCCCCC
Confidence 479999988876544332 1234577764
No 289
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.59 E-value=15 Score=26.17 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=6.9
Q ss_pred ccccccccccc
Q 004419 700 LKCGVCFDRPK 710 (754)
Q Consensus 700 ~~C~iC~~~~~ 710 (754)
..|+.|...+.
T Consensus 6 ~~C~~C~~~I~ 16 (72)
T 1x4l_A 6 SGCAGCTNPIS 16 (72)
T ss_dssp CSBTTTTBCCC
T ss_pred CCCcCCCcccc
Confidence 45777766555
No 290
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=34.49 E-value=10 Score=35.56 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=16.7
Q ss_pred CcccccccccccccceeccCCCcccHHHH
Q 004419 698 AILKCGVCFDRPKEVVITKCFHLFCNPCI 726 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~CgH~fC~~C~ 726 (754)
....||+|...-.-.+. .=||.||+.|-
T Consensus 13 ~~~~CP~Cg~~d~~~~~-~dg~~~C~~Cg 40 (255)
T 1nui_A 13 YHIPCDNCGSSDGNSLF-SDGHTFCYVCE 40 (255)
T ss_dssp EEECCSSSCCSSCEEEE-TTSCEEETTTC
T ss_pred cCCcCCCCCCCCCceEe-CCCCeecccCC
Confidence 35799999663110111 12788898885
No 291
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.28 E-value=19 Score=22.39 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=10.2
Q ss_pred cccccccccccccc
Q 004419 699 ILKCGVCFDRPKEV 712 (754)
Q Consensus 699 ~~~C~iC~~~~~~~ 712 (754)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2eoo_A 12 PYGCNECGKNFGRH 25 (46)
T ss_dssp CEECSSSCCEESSH
T ss_pred CEEccccCcccCCH
Confidence 36788888777654
No 292
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=34.17 E-value=18 Score=25.03 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=9.2
Q ss_pred CCCCccccCcCcC
Q 004419 733 RHRKCPGCGTAFG 745 (754)
Q Consensus 733 ~~~~Cp~C~~~~~ 745 (754)
....||.|+..+-
T Consensus 37 ~~iRC~~CG~RIL 49 (63)
T 3h0g_L 37 EVIRCRECGHRVM 49 (63)
T ss_dssp SCCCCSSSCCCCC
T ss_pred CceECCCCCcEEE
Confidence 4567999986653
No 293
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=34.06 E-value=11 Score=26.24 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=13.5
Q ss_pred cccccccccc--cceeccCCCccc
Q 004419 701 KCGVCFDRPK--EVVITKCFHLFC 722 (754)
Q Consensus 701 ~C~iC~~~~~--~~~~~~CgH~fC 722 (754)
.|+.|...+. ..++..-|..|-
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH 27 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWH 27 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEE
T ss_pred CCcCCCCeeccCceEEEECCCccC
Confidence 6788877766 455555554444
No 294
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=33.70 E-value=17 Score=40.12 Aligned_cols=24 Identities=25% Similarity=0.780 Sum_probs=17.8
Q ss_pred ccHHHHHHHhccCCC-------CccccCcCc
Q 004419 721 FCNPCIQRNLEIRHR-------KCPGCGTAF 744 (754)
Q Consensus 721 fC~~C~~~~~~~~~~-------~Cp~C~~~~ 744 (754)
.|..|-..+.+...+ -||.|+..+
T Consensus 163 mC~~C~~EY~dp~~RRfhAqp~aC~~CGP~l 193 (761)
T 3vth_A 163 MCEKCSREYHDPHDRRFHAQPVACFDCGPSL 193 (761)
T ss_dssp CCHHHHHHHTCTTSTTTTCTTCCCTTTSCCE
T ss_pred CCHHHHHHhcCcccccccCCCCcCCccCCee
Confidence 499999998764222 399999765
No 295
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.63 E-value=19 Score=22.35 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=10.2
Q ss_pred cccccccccccccc
Q 004419 699 ILKCGVCFDRPKEV 712 (754)
Q Consensus 699 ~~~C~iC~~~~~~~ 712 (754)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2emy_A 12 PYECHECGKAFSRK 25 (46)
T ss_dssp CEECSSSCCEESSH
T ss_pred CcCCCCCCcccCcH
Confidence 46788888777654
No 296
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=33.33 E-value=3.4 Score=31.56 Aligned_cols=16 Identities=13% Similarity=-0.097 Sum_probs=11.3
Q ss_pred CccccCcCcCCCCCcc
Q 004419 736 KCPGCGTAFGQSDVRF 751 (754)
Q Consensus 736 ~Cp~C~~~~~~~d~~~ 751 (754)
.||.|+..|-..|=.+
T Consensus 55 vC~~c~~~YPI~dGIP 70 (97)
T 2k5r_A 55 ITRDRKQVFRIEDSIP 70 (97)
T ss_dssp ECTTSCEEEEEETTEE
T ss_pred EcCCCCCCccccCCCc
Confidence 3999998887666333
No 297
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=33.13 E-value=7.5 Score=26.55 Aligned_cols=12 Identities=33% Similarity=0.736 Sum_probs=8.1
Q ss_pred CCccccCcCcCC
Q 004419 735 RKCPGCGTAFGQ 746 (754)
Q Consensus 735 ~~Cp~C~~~~~~ 746 (754)
..||.|+.++..
T Consensus 19 ~~CP~CG~~T~~ 30 (60)
T 2apo_B 19 EICPKCGEKTVI 30 (60)
T ss_dssp SBCSSSCSBCBC
T ss_pred ccCcCCCCcCCC
Confidence 359999965443
No 298
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=32.84 E-value=3.3 Score=27.58 Aligned_cols=25 Identities=24% Similarity=0.729 Sum_probs=19.8
Q ss_pred CCcccHHHHHHHhccCCCCccccCc
Q 004419 718 FHLFCNPCIQRNLEIRHRKCPGCGT 742 (754)
Q Consensus 718 gH~fC~~C~~~~~~~~~~~Cp~C~~ 742 (754)
-|+.|.-|....+......|-.|+-
T Consensus 16 tH~~CrRCG~~syH~qK~~Ca~CGy 40 (57)
T 1vq8_1 16 THTKCRRCGEKSYHTKKKVCSSCGF 40 (57)
T ss_dssp CEEECTTTCSEEEETTTTEETTTCT
T ss_pred ccccccccCChhhhccccccccccC
Confidence 4788888888877766667998975
No 299
>1co4_A AMT1, protein (activator of metallothionein 1); metal regulation, translation/regulation protein complex; NMR {Synthetic} SCOP: g.47.1.1
Probab=32.83 E-value=5.3 Score=24.76 Aligned_cols=26 Identities=15% Similarity=0.447 Sum_probs=17.5
Q ss_pred ccCCCcc-cHHHHHHHhccCCCCccccCcC
Q 004419 715 TKCFHLF-CNPCIQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 715 ~~CgH~f-C~~C~~~~~~~~~~~Cp~C~~~ 743 (754)
+-||..| |..||..+ |...|-+-..+
T Consensus 3 li~g~K~AC~~CirGH---Rss~C~H~drp 29 (42)
T 1co4_A 3 VINGVKYACDSCIKSH---KAAQCEHNDRP 29 (42)
T ss_dssp EETTEEEEETTTTTTS---GGGGCCCCSSC
T ss_pred EEcCcEeehhhhcCcc---ccCeeEcCCCc
Confidence 4567777 89999887 44467765443
No 300
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=32.72 E-value=11 Score=20.98 Aligned_cols=24 Identities=17% Similarity=0.780 Sum_probs=16.1
Q ss_pred ccccccccccccceeccCCCcccH
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCN 723 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~ 723 (754)
..|.+|+..-...-.-.|-.+||+
T Consensus 10 hecalcysitdpgerqrcidmycs 33 (36)
T 2jyp_A 10 HECALCYSITDPGERQRCIDMYCS 33 (36)
T ss_dssp TCCSSSTTTTTTTCTTCGGGTTTT
T ss_pred chheeEEeecCcchhhhhhhheec
Confidence 578899776554444567777775
No 301
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=32.68 E-value=45 Score=26.48 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=29.8
Q ss_pred cccccccccccc-ceeccCCCcccHHHHHHHhcc------------------CCCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEI------------------RHRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~-~~~~~CgH~fC~~C~~~~~~~------------------~~~~Cp~C~~~~~~ 746 (754)
..|.-|...-+. .-.-+-||++|..|...+... ....|-+|+...++
T Consensus 6 ~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp 71 (115)
T 4hc9_A 6 RECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTT 71 (115)
T ss_dssp CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCS
T ss_pred CCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcc
Confidence 578888754432 112367999999998755411 13358888876643
No 302
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.67 E-value=16 Score=26.70 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=23.3
Q ss_pred ccccccccccccceeccCCCcccHHHHHHH
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRN 729 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~ 729 (754)
+.|..|...+.......=|..||..|....
T Consensus 42 F~C~~C~~~L~~~~f~~~g~~yC~~cy~~~ 71 (79)
T 2cor_A 42 FNCANCGKELTADARELKGELYCLPCHDKM 71 (79)
T ss_dssp SBCSSSCCBCCTTCEEETTEEECHHHHHTT
T ss_pred CEeCCCCCccCCCCEeECCEEeCHHHHHHh
Confidence 689999888776544567889999998754
No 303
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.66 E-value=12 Score=27.52 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=9.2
Q ss_pred ccccccccccccceeccCCC
Q 004419 700 LKCGVCFDRPKEVVITKCFH 719 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH 719 (754)
..|+.|...+...++..-|.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~ 35 (81)
T 2dlo_A 16 EKCATCSQPILDRILRAMGK 35 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTE
T ss_pred CccccCCCeecceeEEECCc
Confidence 34555555544443333333
No 304
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.58 E-value=21 Score=25.63 Aligned_cols=13 Identities=31% Similarity=0.480 Sum_probs=9.9
Q ss_pred CCCCccccCcCcC
Q 004419 733 RHRKCPGCGTAFG 745 (754)
Q Consensus 733 ~~~~Cp~C~~~~~ 745 (754)
+...||.|+..|.
T Consensus 67 ~~~~C~~C~k~F~ 79 (79)
T 2dlk_A 67 RDYICEFSGPSSG 79 (79)
T ss_dssp CCCSCCSSSCCCC
T ss_pred CCeeCCCCCCCCC
Confidence 4557999998874
No 305
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=32.48 E-value=9.8 Score=34.35 Aligned_cols=45 Identities=22% Similarity=0.340 Sum_probs=26.0
Q ss_pred cccccccccccccceec-cCCCcccHHHHHHHhcc---CCCCccccCcCc
Q 004419 699 ILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEI---RHRKCPGCGTAF 744 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~---~~~~Cp~C~~~~ 744 (754)
...|.+|...=. .+.. .|...|...|+...+.. +.-.||.|...-
T Consensus 7 ~~~C~~C~~~g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNGGD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCCEE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 356999975422 1111 67767777776543331 223599998643
No 306
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.32 E-value=14 Score=26.66 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=6.6
Q ss_pred ccccccccccc
Q 004419 700 LKCGVCFDRPK 710 (754)
Q Consensus 700 ~~C~iC~~~~~ 710 (754)
..|+.|...+.
T Consensus 6 ~~C~~C~~~I~ 16 (76)
T 1x68_A 6 SGCVACSKPIS 16 (76)
T ss_dssp CCCTTTCCCCC
T ss_pred CCCccCCCccc
Confidence 35666666555
No 307
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.09 E-value=8.6 Score=29.95 Aligned_cols=15 Identities=13% Similarity=0.374 Sum_probs=10.9
Q ss_pred Ccccccccccccccc
Q 004419 698 AILKCGVCFDRPKEV 712 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~ 712 (754)
..+.|+.|...|...
T Consensus 17 kpy~C~~Cgk~F~~~ 31 (102)
T 2ghf_A 17 GGYECKYCTFQTPDL 31 (102)
T ss_dssp SSEECSSCSCEESCH
T ss_pred cCcCCCCCCCccCCH
Confidence 347899988888653
No 308
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.00 E-value=17 Score=26.73 Aligned_cols=39 Identities=21% Similarity=0.524 Sum_probs=20.5
Q ss_pred ccccccccccc--cceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 700 LKCGVCFDRPK--EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 700 ~~C~iC~~~~~--~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
..|+.|...+. ..++..-|..|-..|.. |-.|+.++...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~---------C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDCFT---------CSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTTCC---------CSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEEECccccccccCc---------hhhCCCccCCC
Confidence 36777776665 44444445544333332 55565555543
No 309
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.89 E-value=15 Score=26.10 Aligned_cols=21 Identities=10% Similarity=0.025 Sum_probs=10.2
Q ss_pred ccccccccccc--ceeccCCCcc
Q 004419 701 KCGVCFDRPKE--VVITKCFHLF 721 (754)
Q Consensus 701 ~C~iC~~~~~~--~~~~~CgH~f 721 (754)
.|+.|...+.. .++..-|..|
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~ 29 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEYKGSSW 29 (72)
T ss_dssp CBSSSCCCCCSSSCEEEETTEEE
T ss_pred CCccCCCcccCCceEEEECcCee
Confidence 56666655542 3444344333
No 310
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=31.87 E-value=12 Score=29.46 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=6.0
Q ss_pred cccccccccccce
Q 004419 701 KCGVCFDRPKEVV 713 (754)
Q Consensus 701 ~C~iC~~~~~~~~ 713 (754)
.|--|+..|.+..
T Consensus 7 ~C~eC~~~~~d~~ 19 (111)
T 1d4u_A 7 ICEECGKEFMDSY 19 (111)
T ss_dssp ECTTTCCEESCSS
T ss_pred ccccCCChhhHHH
Confidence 3555554444433
No 311
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.82 E-value=16 Score=22.69 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=10.0
Q ss_pred cccccccccccccc
Q 004419 699 ILKCGVCFDRPKEV 712 (754)
Q Consensus 699 ~~~C~iC~~~~~~~ 712 (754)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2emm_A 12 PHKCNECGKSFIQS 25 (46)
T ss_dssp SEECSSSCCEESSH
T ss_pred CeeCCCCChhhCCH
Confidence 36788887777653
No 312
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=31.49 E-value=8.8 Score=43.65 Aligned_cols=16 Identities=31% Similarity=1.088 Sum_probs=11.8
Q ss_pred ccCCCCccccCcCcCC
Q 004419 731 EIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 731 ~~~~~~Cp~C~~~~~~ 746 (754)
+.+...||.|+.++..
T Consensus 524 dlp~k~cp~cg~~~~~ 539 (1041)
T 3f2b_A 524 DLPDKNCPRCGTKYKK 539 (1041)
T ss_dssp GSCCCBCTTTCCBCEE
T ss_pred CCccccCccccccccc
Confidence 3467789999987653
No 313
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.36 E-value=12 Score=21.30 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=9.4
Q ss_pred CCccccCcCcCCC
Q 004419 735 RKCPGCGTAFGQS 747 (754)
Q Consensus 735 ~~Cp~C~~~~~~~ 747 (754)
..||.|+..|...
T Consensus 8 ~~C~~C~k~f~~~ 20 (35)
T 2elx_A 8 YVCALCLKKFVSS 20 (35)
T ss_dssp EECSSSCCEESSH
T ss_pred eECCCCcchhCCH
Confidence 4688888887753
No 314
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.26 E-value=13 Score=21.50 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=9.8
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (36)
T 2elt_A 9 PYKCPQCSYASAIK 22 (36)
T ss_dssp SEECSSSSCEESSH
T ss_pred CCCCCCCCcccCCH
Confidence 34688888888653
No 315
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.25 E-value=13 Score=27.15 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=14.3
Q ss_pred cccccccccccccceeccCCCcc
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLF 721 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~f 721 (754)
...|+.|...+...++..-|..|
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~ 37 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHR 37 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEE
T ss_pred CCccccCCCCccCcEEEECccee
Confidence 35788887776655555555444
No 316
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.12 E-value=12 Score=21.62 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=9.8
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (36)
T 2elq_A 9 PFKCSLCEYATRSK 22 (36)
T ss_dssp SEECSSSSCEESCH
T ss_pred CccCCCCCchhCCH
Confidence 34588888888653
No 317
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=31.07 E-value=19 Score=27.15 Aligned_cols=12 Identities=33% Similarity=0.808 Sum_probs=10.4
Q ss_pred cccHHHHHHHhc
Q 004419 720 LFCNPCIQRNLE 731 (754)
Q Consensus 720 ~fC~~C~~~~~~ 731 (754)
-||.-|+..|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 318
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.98 E-value=21 Score=22.16 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=10.2
Q ss_pred cccccccccccccc
Q 004419 699 ILKCGVCFDRPKEV 712 (754)
Q Consensus 699 ~~~C~iC~~~~~~~ 712 (754)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2yso_A 12 SHQCRECGEIFFQY 25 (46)
T ss_dssp CEECTTTCCEESSH
T ss_pred CEEccccChhhCCH
Confidence 46788888777654
No 319
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=30.83 E-value=4.1 Score=36.52 Aligned_cols=9 Identities=22% Similarity=0.456 Sum_probs=6.1
Q ss_pred ccccccccc
Q 004419 700 LKCGVCFDR 708 (754)
Q Consensus 700 ~~C~iC~~~ 708 (754)
.-||.|+..
T Consensus 35 ~yCPnCG~~ 43 (257)
T 4esj_A 35 SYCPNCGNN 43 (257)
T ss_dssp CCCTTTCCS
T ss_pred CcCCCCCCh
Confidence 578888653
No 320
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=30.81 E-value=19 Score=27.17 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=10.7
Q ss_pred cccHHHHHHHhcc
Q 004419 720 LFCNPCIQRNLEI 732 (754)
Q Consensus 720 ~fC~~C~~~~~~~ 732 (754)
-||.-|+..|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999853
No 321
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=30.80 E-value=14 Score=26.71 Aligned_cols=37 Identities=24% Similarity=0.567 Sum_probs=20.7
Q ss_pred cccccccccc-cceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 701 KCGVCFDRPK-EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 701 ~C~iC~~~~~-~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
.|+.|...+. ...+..-|..|-..|.. |..|+.++..
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~CF~---------C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPCLK---------CEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTTCB---------CTTTCCBCCT
T ss_pred cCCCCCCEEECceEEEECCccccCCCCC---------ccccCccCCC
Confidence 5888988765 44455446554333322 5555555554
No 322
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.75 E-value=14 Score=26.95 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=7.3
Q ss_pred cccccccccccceec
Q 004419 701 KCGVCFDRPKEVVIT 715 (754)
Q Consensus 701 ~C~iC~~~~~~~~~~ 715 (754)
.|+.|...+...++.
T Consensus 17 ~C~~C~~~I~~~~v~ 31 (80)
T 1x3h_A 17 KCGGCNRPVLENYLS 31 (80)
T ss_dssp BCTTTCCBCCSSCEE
T ss_pred ccccCCCeecceeEE
Confidence 455555554443333
No 323
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.74 E-value=14 Score=21.54 Aligned_cols=14 Identities=29% Similarity=0.842 Sum_probs=10.0
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (37)
T 2elo_A 9 SYSCPVCEKSFSED 22 (37)
T ss_dssp CCEETTTTEECSSH
T ss_pred CcCCCCCCCccCCH
Confidence 34688888888754
No 324
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.71 E-value=16 Score=26.83 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=9.8
Q ss_pred ccccccccccccc
Q 004419 699 ILKCGVCFDRPKE 711 (754)
Q Consensus 699 ~~~C~iC~~~~~~ 711 (754)
.+.|++|...|..
T Consensus 15 ~~~C~~C~~~f~~ 27 (86)
T 1x6h_A 15 PYACSHCDKTFRQ 27 (86)
T ss_dssp CEECSSSSCEESS
T ss_pred CCcCCCCCCccCC
Confidence 4788888887764
No 325
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.62 E-value=24 Score=24.46 Aligned_cols=39 Identities=26% Similarity=0.498 Sum_probs=24.1
Q ss_pred ccccc--cccccccceecc-CCCcccHHHHHHHhccCCCCccccCc
Q 004419 700 LKCGV--CFDRPKEVVITK-CFHLFCNPCIQRNLEIRHRKCPGCGT 742 (754)
Q Consensus 700 ~~C~i--C~~~~~~~~~~~-CgH~fC~~C~~~~~~~~~~~Cp~C~~ 742 (754)
..|++ |...---|+.-+ ||..||..--.. ....||.=..
T Consensus 13 ~~Cs~~~Ck~~~ll~f~C~~C~~~FC~~HR~~----e~H~C~~~~~ 54 (63)
T 1x4v_A 13 NKCERAGCRQREMMKLTCERCSRNFCIKHRHP----LDHDCSGEGH 54 (63)
T ss_dssp CCCCSTTCCCCCSSCCBCSSSCCBCCHHHHST----TSSCCCSTTS
T ss_pred CCCCccCCCCCCccceECCCCCcccCcccCCc----cCCcCCCCCC
Confidence 57888 975533355555 999999754332 3456875433
No 326
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.53 E-value=53 Score=24.41 Aligned_cols=13 Identities=31% Similarity=0.777 Sum_probs=10.8
Q ss_pred CCccccCcCcCCC
Q 004419 735 RKCPGCGTAFGQS 747 (754)
Q Consensus 735 ~~Cp~C~~~~~~~ 747 (754)
..||.|+..|...
T Consensus 63 ~~C~~C~k~f~~~ 75 (95)
T 2ej4_A 63 EECPREGKSFKAK 75 (95)
T ss_dssp TTCSSTTCCCSSH
T ss_pred cCCCCCCcccCCH
Confidence 5799999999764
No 327
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=30.36 E-value=50 Score=27.55 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=27.2
Q ss_pred ccccccccccccc---------------eecc---CCCccc-HHHHHHHhcc----CCCCccc--cCcCcCCC
Q 004419 700 LKCGVCFDRPKEV---------------VITK---CFHLFC-NPCIQRNLEI----RHRKCPG--CGTAFGQS 747 (754)
Q Consensus 700 ~~C~iC~~~~~~~---------------~~~~---CgH~fC-~~C~~~~~~~----~~~~Cp~--C~~~~~~~ 747 (754)
+.|++|...|... ..-+ ||-.|- ..-+...... ....||. |+..|...
T Consensus 63 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~ 135 (155)
T 2rpc_A 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANS 135 (155)
T ss_dssp TTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSH
T ss_pred cCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCH
Confidence 5799998888541 1112 666662 2222333221 2346997 99988764
No 328
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=30.04 E-value=21 Score=33.33 Aligned_cols=32 Identities=13% Similarity=0.324 Sum_probs=16.2
Q ss_pred eccCCCcccHHHHHHHh-ccCCCCccccCc-CcC
Q 004419 714 ITKCFHLFCNPCIQRNL-EIRHRKCPGCGT-AFG 745 (754)
Q Consensus 714 ~~~CgH~fC~~C~~~~~-~~~~~~Cp~C~~-~~~ 745 (754)
.+.||+.|-..=+.... ....+.||.|+. .+.
T Consensus 126 C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~~lr 159 (253)
T 1ma3_A 126 CLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVK 159 (253)
T ss_dssp ETTTCCEEEGGGTHHHHHTTCCCCCTTTCCSCEE
T ss_pred eCCCCCcCcHHHHHHHhccCCCCCCCCCCCcccc
Confidence 34666665322111111 113468999998 543
No 329
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=29.99 E-value=1.5e+02 Score=24.38 Aligned_cols=13 Identities=15% Similarity=-0.038 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 004419 618 LADAEKELKWLKS 630 (754)
Q Consensus 618 ~~~l~~~~~~l~~ 630 (754)
+..+..+...+..
T Consensus 96 ~~~LeAE~aKLeE 108 (146)
T 2xnx_M 96 KEQLTIEKAKLEE 108 (146)
T ss_dssp HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 330
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=29.89 E-value=22 Score=24.13 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=15.3
Q ss_pred cCCccccccccccccccee-ccCCCcccHHHHH
Q 004419 696 CKAILKCGVCFDRPKEVVI-TKCFHLFCNPCIQ 727 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~~~~-~~CgH~fC~~C~~ 727 (754)
+...+.||.|...- .+. ..-|-++|..|..
T Consensus 8 ll~~~~Cp~C~~~~--lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 8 ALPRVTCPNHPDAI--LVEDYRAGDMICPECGL 38 (58)
T ss_dssp CCSCCSBTTBSSSC--CEECSSSCCEECTTTCC
T ss_pred ccccccCcCCCCCc--eeEeCCCCeEEeCCCCC
Confidence 44456899996421 111 1345555555543
No 331
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=29.89 E-value=38 Score=22.83 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=23.0
Q ss_pred ccccccccccccc----ceeccCCCcc-cHHHHHHHhc
Q 004419 699 ILKCGVCFDRPKE----VVITKCFHLF-CNPCIQRNLE 731 (754)
Q Consensus 699 ~~~C~iC~~~~~~----~~~~~CgH~f-C~~C~~~~~~ 731 (754)
...|.-|...+.. .-....-|.| |..|+.++..
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~fs~ 57 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSS 57 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHHCC
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHcccCC
Confidence 3689999888754 2222577889 5679888755
No 332
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=29.88 E-value=1.8e+02 Score=22.02 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=14.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 004419 339 KEMGMMEAQLNRWKETADEALSLREKAVSLKVSLS 373 (754)
Q Consensus 339 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 373 (754)
.++..+..++..+.........++.+...+...++
T Consensus 54 ~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe 88 (96)
T 1t3j_A 54 EEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELE 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333333333343444444444444444444433
No 333
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.83 E-value=14 Score=19.80 Aligned_cols=11 Identities=36% Similarity=1.078 Sum_probs=8.0
Q ss_pred CccccCcCcCC
Q 004419 736 KCPGCGTAFGQ 746 (754)
Q Consensus 736 ~Cp~C~~~~~~ 746 (754)
.||.|+..|..
T Consensus 5 ~C~~C~~~f~~ 15 (30)
T 2m0d_A 5 QCDYCGRSFSD 15 (30)
T ss_dssp ECTTTCCEESC
T ss_pred cCCCCCcccCC
Confidence 58888877764
No 334
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=29.83 E-value=18 Score=20.22 Aligned_cols=13 Identities=38% Similarity=0.835 Sum_probs=10.1
Q ss_pred CCccccCcCcCCC
Q 004419 735 RKCPGCGTAFGQS 747 (754)
Q Consensus 735 ~~Cp~C~~~~~~~ 747 (754)
..||.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (32)
T 2kfq_A 3 FACPACPKRFMRS 15 (32)
T ss_dssp SSSSSSCTTHHHH
T ss_pred CCCCCCCcccCCH
Confidence 4699999888754
No 335
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=29.38 E-value=15 Score=21.96 Aligned_cols=14 Identities=36% Similarity=0.750 Sum_probs=10.1
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 8 p~~C~~CgK~F~~~ 21 (36)
T 1fv5_A 8 RFMCLPCGIAFSSP 21 (36)
T ss_dssp CCEETTTTEECSCH
T ss_pred CeECCCCCCccCCH
Confidence 34688888888754
No 336
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=29.31 E-value=16 Score=31.00 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=9.5
Q ss_pred ccCCccccccccc
Q 004419 695 DCKAILKCGVCFD 707 (754)
Q Consensus 695 ~~~~~~~C~iC~~ 707 (754)
.+.....||.|..
T Consensus 17 ~ln~~~~CPECGs 29 (197)
T 3k1f_M 17 NLNIVLTCPECKV 29 (197)
T ss_dssp CCCCCCCCTTTCC
T ss_pred ccccCeECcCCCC
Confidence 4455578999986
No 337
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=29.27 E-value=23 Score=33.66 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=19.2
Q ss_pred ceeccCCCcccHHHHHHH-hccCCCCccccCcCcCC
Q 004419 712 VVITKCFHLFCNPCIQRN-LEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 712 ~~~~~CgH~fC~~C~~~~-~~~~~~~Cp~C~~~~~~ 746 (754)
...+.||+.|...-+... .....+.||.|+..+.+
T Consensus 140 ~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP 175 (285)
T 3glr_A 140 ATCTVCQRPFPGEDIRADVMADRVPRCPVCTGVVKP 175 (285)
T ss_dssp EEETTTCCEEEGGGGHHHHHTTCCCBCTTTCCBEEE
T ss_pred EEECCCCCcCCHHHHHHHhhcCCCCCCCCCCCccCC
Confidence 344567777644322221 12245689999876544
No 338
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=29.26 E-value=21 Score=39.80 Aligned_cols=33 Identities=30% Similarity=0.656 Sum_probs=25.0
Q ss_pred cccccccccccc----------ceeccCCCcccHHHHHHHhcc
Q 004419 700 LKCGVCFDRPKE----------VVITKCFHLFCNPCIQRNLEI 732 (754)
Q Consensus 700 ~~C~iC~~~~~~----------~~~~~CgH~fC~~C~~~~~~~ 732 (754)
-+||+|+-...+ ...+.||.-||+.|.+.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~ 56 (776)
T 4gut_A 14 ATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRS 56 (776)
T ss_dssp CSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHST
T ss_pred ccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhcc
Confidence 479999765433 455689999999999977654
No 339
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.14 E-value=20 Score=22.91 Aligned_cols=13 Identities=31% Similarity=0.925 Sum_probs=9.9
Q ss_pred CCCccccCcCcCC
Q 004419 734 HRKCPGCGTAFGQ 746 (754)
Q Consensus 734 ~~~Cp~C~~~~~~ 746 (754)
...||.|+..|..
T Consensus 12 ~~~CPrCn~~f~~ 24 (49)
T 2e72_A 12 RKICPRCNAQFRV 24 (49)
T ss_dssp CCCCTTTCCCCSS
T ss_pred ceeCCcccccccc
Confidence 4469999988874
No 340
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=29.12 E-value=5.4 Score=27.20 Aligned_cols=9 Identities=44% Similarity=1.254 Sum_probs=6.1
Q ss_pred CCccccCcC
Q 004419 735 RKCPGCGTA 743 (754)
Q Consensus 735 ~~Cp~C~~~ 743 (754)
..||.|+.+
T Consensus 18 ~~CP~CG~~ 26 (60)
T 2aus_D 18 ETCPVCGEK 26 (60)
T ss_dssp SBCTTTCSB
T ss_pred ccCcCCCCc
Confidence 358888854
No 341
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.90 E-value=14 Score=21.27 Aligned_cols=14 Identities=21% Similarity=0.468 Sum_probs=9.9
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (36)
T 2elv_A 9 LYDCHICERKFKNE 22 (36)
T ss_dssp CEECSSSCCEESSH
T ss_pred CeECCCCCCccCCH
Confidence 34688888887754
No 342
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.78 E-value=26 Score=21.68 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=10.4
Q ss_pred cccccccccccccc
Q 004419 699 ILKCGVCFDRPKEV 712 (754)
Q Consensus 699 ~~~C~iC~~~~~~~ 712 (754)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2en6_A 12 PYGCNECGKTFSQK 25 (46)
T ss_dssp CEEETTTTEEESSH
T ss_pred CeECCCCCcccCch
Confidence 46888888887754
No 343
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.63 E-value=17 Score=22.57 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=10.0
Q ss_pred cccccccccccccc
Q 004419 699 ILKCGVCFDRPKEV 712 (754)
Q Consensus 699 ~~~C~iC~~~~~~~ 712 (754)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2eq0_A 12 PYKCHECGKVFRRN 25 (46)
T ss_dssp CEECTTTCCEESSH
T ss_pred CeECCCCCchhCCH
Confidence 46788887777653
No 344
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=28.58 E-value=1.3e+02 Score=22.94 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 004419 120 QHLAGELEETMAELEESRRKLVSLK 144 (754)
Q Consensus 120 ~~l~~~~~~~~~el~~~~~~~~~l~ 144 (754)
..+...++.+..+-..+...+..|.
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444443
No 345
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=28.56 E-value=17 Score=30.48 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=9.3
Q ss_pred ccccccccccc
Q 004419 700 LKCGVCFDRPK 710 (754)
Q Consensus 700 ~~C~iC~~~~~ 710 (754)
-.|+||...|.
T Consensus 21 g~C~IC~~~l~ 31 (157)
T 1e7l_A 21 GKCLICQRELN 31 (157)
T ss_dssp TBCTTTCCBCC
T ss_pred CcCcccCCccc
Confidence 68999998864
No 346
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.51 E-value=18 Score=26.36 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=10.2
Q ss_pred cccccccccccceeccCCCcc
Q 004419 701 KCGVCFDRPKEVVITKCFHLF 721 (754)
Q Consensus 701 ~C~iC~~~~~~~~~~~CgH~f 721 (754)
.|+.|...+...++..-|..|
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~ 37 (80)
T 2cuq_A 17 RCARCSKTLTQGGVTYRDQPW 37 (80)
T ss_dssp CCTTTCCCCCSCCEESSSSEE
T ss_pred cCCCCCCEecCcEEEECCchh
Confidence 566665555444444444333
No 347
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.51 E-value=41 Score=25.16 Aligned_cols=32 Identities=16% Similarity=0.449 Sum_probs=24.4
Q ss_pred cccccccccccc-ceeccCCCcccHHHHHHHhc
Q 004419 700 LKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLE 731 (754)
Q Consensus 700 ~~C~iC~~~~~~-~~~~~CgH~fC~~C~~~~~~ 731 (754)
+.|..|...+.. .....=|..||..|....+.
T Consensus 52 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~ 84 (90)
T 2dar_A 52 FNCAHCKNTMAYIGFVEEKGALYCELCYEKFFA 84 (90)
T ss_dssp CBCSSSCCBCSSSCBEESSSCEECHHHHHHHTS
T ss_pred CccCCCCCCCCCCEeEeECCEEECHHHHHHHcC
Confidence 789999888765 33446789999999987643
No 348
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.41 E-value=13 Score=26.89 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=12.6
Q ss_pred ccccccccccc--cceeccCCCcc
Q 004419 700 LKCGVCFDRPK--EVVITKCFHLF 721 (754)
Q Consensus 700 ~~C~iC~~~~~--~~~~~~CgH~f 721 (754)
..|+.|...+. ..++..-|..|
T Consensus 12 ~~C~~C~~~I~~~~~~~~a~~~~~ 35 (77)
T 1g47_A 12 ATCERCKGGFAPAEKIVNSNGELY 35 (77)
T ss_dssp CBCSSSCCBCCSTTTCEEETTEEE
T ss_pred CCchhcCCccCCCceEEEeCccEe
Confidence 57888877664 34444444433
No 349
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=28.28 E-value=16 Score=22.72 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=10.2
Q ss_pred cccccccccccccc
Q 004419 699 ILKCGVCFDRPKEV 712 (754)
Q Consensus 699 ~~~C~iC~~~~~~~ 712 (754)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2em9_A 12 PYNCKECGKSFRWA 25 (46)
T ss_dssp SEECSSSCCEESSH
T ss_pred CeECCccccccCCh
Confidence 46788888877653
No 350
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=28.27 E-value=2e+02 Score=21.97 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 77 DDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVS 142 (754)
Q Consensus 77 ~~~l~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~ 142 (754)
+.+++.++...+.++.....++.......+.--+.+. ...+..-...+..++..|.++.+.++.
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevN--K~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVN--KSTLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555554444444433333321 122233333344444444444444443
No 351
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=28.02 E-value=26 Score=34.04 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=18.2
Q ss_pred CCCcccHHHHHHHh-ccCCCCccccCcCcCC
Q 004419 717 CFHLFCNPCIQRNL-EIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 717 CgH~fC~~C~~~~~-~~~~~~Cp~C~~~~~~ 746 (754)
|||.|-...+.... ....+.||.|+..+.+
T Consensus 167 C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP 197 (323)
T 1j8f_A 167 CRHEYPLSWMKEKIFSEVTPKCEDCQSLVKP 197 (323)
T ss_dssp TCCEECHHHHHHHHHTTCCCBCTTTCCBEEE
T ss_pred cCccccHHHHHHhhccCCCCCCcCCCCccCC
Confidence 88877554433222 2235689999976544
No 352
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.71 E-value=5.3 Score=30.44 Aligned_cols=43 Identities=21% Similarity=0.415 Sum_probs=20.1
Q ss_pred ccccccccccccceec---cCCCcccHHHHHHHhc---cCCCCccccCc
Q 004419 700 LKCGVCFDRPKEVVIT---KCFHLFCNPCIQRNLE---IRHRKCPGCGT 742 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~---~CgH~fC~~C~~~~~~---~~~~~Cp~C~~ 742 (754)
..|.||...-....++ .|...|-..|+...+. ...-.||.|..
T Consensus 17 ~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 17 YICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 4688887654322222 4543443444432221 12224877754
No 353
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=27.68 E-value=23 Score=35.01 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=9.3
Q ss_pred CCccccCcCcCC
Q 004419 735 RKCPGCGTAFGQ 746 (754)
Q Consensus 735 ~~Cp~C~~~~~~ 746 (754)
+.||.|+..+.+
T Consensus 172 P~Cp~Cgg~lrP 183 (361)
T 1q14_A 172 VKCDVCGELVKP 183 (361)
T ss_dssp CBCTTTCCBEEE
T ss_pred CCCcCCCCEeCC
Confidence 689999976544
No 354
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=27.63 E-value=16 Score=20.85 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=9.8
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...|+.|+..|...
T Consensus 7 ~~~C~~C~k~f~~~ 20 (35)
T 1srk_A 7 PFVCRICLSAFTTK 20 (35)
T ss_dssp CEECSSSCCEESSH
T ss_pred CeeCCCCCcccCCH
Confidence 34588888888654
No 355
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=27.47 E-value=13 Score=33.71 Aligned_cols=42 Identities=24% Similarity=0.495 Sum_probs=18.2
Q ss_pred cccccccccccceec---cCCCcccHHHHHHHhcc---C-CCCccccCc
Q 004419 701 KCGVCFDRPKEVVIT---KCFHLFCNPCIQRNLEI---R-HRKCPGCGT 742 (754)
Q Consensus 701 ~C~iC~~~~~~~~~~---~CgH~fC~~C~~~~~~~---~-~~~Cp~C~~ 742 (754)
.|.+|+..-....++ .|...|-..|+...+.. + .-.||.|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 466776532221122 45445545555533321 2 235999964
No 356
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=27.35 E-value=1.9e+02 Score=21.31 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 004419 662 KLEEELMEVN 671 (754)
Q Consensus 662 ~~~~e~~~~~ 671 (754)
.++.+|...+
T Consensus 65 ~Ld~EIatYR 74 (84)
T 1gk4_A 65 ALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 3444444333
No 357
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.16 E-value=17 Score=20.93 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=9.2
Q ss_pred CCccccCcCcCCC
Q 004419 735 RKCPGCGTAFGQS 747 (754)
Q Consensus 735 ~~Cp~C~~~~~~~ 747 (754)
..||.|+..|...
T Consensus 10 ~~C~~C~k~f~~~ 22 (36)
T 2els_A 10 FTCEYCNKVFKFK 22 (36)
T ss_dssp EECTTTCCEESSH
T ss_pred EECCCCCceeCCH
Confidence 3588888887653
No 358
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.12 E-value=14 Score=21.67 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=9.2
Q ss_pred CCccccCcCcCCC
Q 004419 735 RKCPGCGTAFGQS 747 (754)
Q Consensus 735 ~~Cp~C~~~~~~~ 747 (754)
..||.|+..|...
T Consensus 10 ~~C~~C~k~f~~~ 22 (37)
T 2elm_A 10 YYCSQCHYSSITK 22 (37)
T ss_dssp EECSSSSCEEECH
T ss_pred eECCCCCcccCCH
Confidence 3588888887653
No 359
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=26.95 E-value=27 Score=25.98 Aligned_cols=37 Identities=24% Similarity=0.489 Sum_probs=23.6
Q ss_pred cccccc--cccccccceecc-CCCcccHHHHHHHhccCCCCccc
Q 004419 699 ILKCGV--CFDRPKEVVITK-CFHLFCNPCIQRNLEIRHRKCPG 739 (754)
Q Consensus 699 ~~~C~i--C~~~~~~~~~~~-CgH~fC~~C~~~~~~~~~~~Cp~ 739 (754)
...|+. |...---|+.-+ ||+.||..--.. ....||.
T Consensus 25 ~~~C~~~~Ck~~~~l~f~C~~C~~~FC~~HR~~----e~H~C~~ 64 (86)
T 1wfe_A 25 SYSCSFKGCTDVELVAVICPYCEKNFCLRHRHQ----SDHDCEK 64 (86)
T ss_dssp CEECCSTTCCCEESSCEECTTTCCEECGGGCST----GGGTCSS
T ss_pred CCCCCCcCCCCCCccceECCCCCcccccccCCc----cCCCCCC
Confidence 367998 965533566665 999999754322 2345876
No 360
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=26.79 E-value=12 Score=26.02 Aligned_cols=47 Identities=23% Similarity=0.530 Sum_probs=26.6
Q ss_pred Cccccccccccccc-ceec---cCCCcccHHHHHHHhc----cCCCCccccCcCc
Q 004419 698 AILKCGVCFDRPKE-VVIT---KCFHLFCNPCIQRNLE----IRHRKCPGCGTAF 744 (754)
Q Consensus 698 ~~~~C~iC~~~~~~-~~~~---~CgH~fC~~C~~~~~~----~~~~~Cp~C~~~~ 744 (754)
....|++|...+.+ ...+ .|..-|-..|+.-... .....||.|+...
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 34679999888743 2222 4555555555543221 1345699997543
No 361
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.79 E-value=19 Score=22.41 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=10.4
Q ss_pred cccccccccccccc
Q 004419 699 ILKCGVCFDRPKEV 712 (754)
Q Consensus 699 ~~~C~iC~~~~~~~ 712 (754)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ysp_A 12 PYKCEKCGKGYNSK 25 (46)
T ss_dssp SEEETTTTEEESCH
T ss_pred CeECCCCCCccCCH
Confidence 46888888888654
No 362
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=26.75 E-value=21 Score=25.81 Aligned_cols=39 Identities=18% Similarity=0.429 Sum_probs=21.6
Q ss_pred cccccccccccc-----ceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 700 LKCGVCFDRPKE-----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 700 ~~C~iC~~~~~~-----~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
..|+.|...+.. .++..-|..|-..|+ +|..|+.+++..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF---------~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCF---------HCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTTC---------BCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCcccC---------EehhcCCCCCCC
Confidence 467777776663 444444544433332 266677666643
No 363
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=26.70 E-value=16 Score=29.63 Aligned_cols=10 Identities=40% Similarity=1.165 Sum_probs=5.1
Q ss_pred CccccCcCcC
Q 004419 736 KCPGCGTAFG 745 (754)
Q Consensus 736 ~Cp~C~~~~~ 745 (754)
+|..|+.++.
T Consensus 90 ~C~~C~~~L~ 99 (123)
T 2l4z_A 90 KCSSCQAQLG 99 (123)
T ss_dssp BCTTTCCBGG
T ss_pred CcCcCCCccc
Confidence 4555555553
No 364
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.09 E-value=27 Score=20.91 Aligned_cols=14 Identities=21% Similarity=0.674 Sum_probs=10.3
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 10 ~~~C~~C~k~f~~~ 23 (42)
T 2yte_A 10 PYSCAECKETFSDN 23 (42)
T ss_dssp SCBCTTTCCBCSSH
T ss_pred CeECCCCCCccCCH
Confidence 34688898888754
No 365
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=25.99 E-value=33 Score=23.28 Aligned_cols=31 Identities=23% Similarity=0.696 Sum_probs=22.6
Q ss_pred ccccccccc---ccccceeccCCCcccH-HHHHHH
Q 004419 699 ILKCGVCFD---RPKEVVITKCFHLFCN-PCIQRN 729 (754)
Q Consensus 699 ~~~C~iC~~---~~~~~~~~~CgH~fC~-~C~~~~ 729 (754)
...|.||.. .+....-..||-.||+ .|...+
T Consensus 11 ~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~H 45 (59)
T 1x4s_A 11 AGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTH 45 (59)
T ss_dssp CEEECSSCTTCCEEECEECTTTCCEESSHHHHHHH
T ss_pred CCcCcCCCCCcCCCccccCcCCCCCccChHHHHHH
Confidence 357999985 4444555689999987 788765
No 366
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=25.70 E-value=4.5 Score=30.05 Aligned_cols=14 Identities=14% Similarity=0.470 Sum_probs=9.1
Q ss_pred ccCCcccccccccc
Q 004419 695 DCKAILKCGVCFDR 708 (754)
Q Consensus 695 ~~~~~~~C~iC~~~ 708 (754)
.+...+.||.|+..
T Consensus 19 ~L~t~F~CPfCnh~ 32 (85)
T 1wii_A 19 TLETQFTCPFCNHE 32 (85)
T ss_dssp CCSSCCCCTTTCCS
T ss_pred CCCCeEcCCCCCCC
Confidence 34566888888543
No 367
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=25.68 E-value=18 Score=23.39 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=15.6
Q ss_pred CcccccccccccccceeccCCCcccHHHHH
Q 004419 698 AILKCGVCFDRPKEVVITKCFHLFCNPCIQ 727 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~ 727 (754)
....|+-|. .|..| .|.||..|-.
T Consensus 10 D~WkC~~C~-k~N~P-----l~ryC~rCwa 33 (53)
T 2cr8_A 10 DEWQCTECK-KFNSP-----SKRYCFRCWA 33 (53)
T ss_dssp CCEECSSSC-CEECS-----SCCBCTTTCC
T ss_pred ceeeccccc-ccCCC-----ccchhHHHHH
Confidence 346788887 56666 5667776643
No 368
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.60 E-value=28 Score=20.85 Aligned_cols=14 Identities=43% Similarity=0.961 Sum_probs=10.6
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 11 ~~~C~~C~k~f~~~ 24 (42)
T 2ytb_A 11 PYRCDQCGKAFSQK 24 (42)
T ss_dssp SBCCTTTTCCBSSH
T ss_pred CeeCCCccchhCCH
Confidence 34699999888764
No 369
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=25.24 E-value=12 Score=26.30 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=25.8
Q ss_pred cccccccccccc---cceec--cCCCcccHHHHHHHh------ccCCCCccccCcCcC
Q 004419 699 ILKCGVCFDRPK---EVVIT--KCFHLFCNPCIQRNL------EIRHRKCPGCGTAFG 745 (754)
Q Consensus 699 ~~~C~iC~~~~~---~~~~~--~CgH~fC~~C~~~~~------~~~~~~Cp~C~~~~~ 745 (754)
...|.||...+. +..++ .|+..|-..|+...+ ....-.||.|.....
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 468999987642 23333 565555555544321 113346999876543
No 370
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.24 E-value=29 Score=21.41 Aligned_cols=14 Identities=43% Similarity=0.902 Sum_probs=10.5
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2enf_A 12 PYKCNECGKVFTQN 25 (46)
T ss_dssp SCBCSSSCCBCSSH
T ss_pred CeECCCCCcccCCH
Confidence 44699999888764
No 371
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=25.19 E-value=32 Score=32.85 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=17.5
Q ss_pred eccCCCcccHHHHHHHhc----cCCCCccccCcCcCC
Q 004419 714 ITKCFHLFCNPCIQRNLE----IRHRKCPGCGTAFGQ 746 (754)
Q Consensus 714 ~~~CgH~fC~~C~~~~~~----~~~~~Cp~C~~~~~~ 746 (754)
.+.||+.|-..=+..... ...+.||.|+..+.+
T Consensus 139 C~~C~~~~~~~~~~~~~~~~~~~~~P~C~~Cgg~lrP 175 (289)
T 1q1a_A 139 CIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKP 175 (289)
T ss_dssp ETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCBEEE
T ss_pred ECCCCCCCcHHHHHHHHhhccCCCCccCCCCCCEECC
Confidence 345666664332222221 124689999976544
No 372
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=24.95 E-value=24 Score=28.46 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=13.2
Q ss_pred cccccccccc--cceeccCCCcc
Q 004419 701 KCGVCFDRPK--EVVITKCFHLF 721 (754)
Q Consensus 701 ~C~iC~~~~~--~~~~~~CgH~f 721 (754)
.|..|...+. ..++..-|+.|
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~ 32 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVY 32 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCC
T ss_pred cccCCCCeecCCceEEEECCccc
Confidence 7999988776 34444444444
No 373
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=24.89 E-value=18 Score=19.26 Aligned_cols=9 Identities=33% Similarity=1.062 Sum_probs=5.6
Q ss_pred CccccCcCc
Q 004419 736 KCPGCGTAF 744 (754)
Q Consensus 736 ~Cp~C~~~~ 744 (754)
.||.|...+
T Consensus 8 qcpvcqq~m 16 (29)
T 3vhs_A 8 QCPVCQQMM 16 (29)
T ss_dssp ECTTTCCEE
T ss_pred eChHHHHhC
Confidence 477776543
No 374
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.77 E-value=32 Score=20.89 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=10.5
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (44)
T 2en7_A 12 PYVCNECGKAFRSK 25 (44)
T ss_dssp SSCCTTTCCCCSSH
T ss_pred CeECCCCCCccCCH
Confidence 44699999888764
No 375
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.67 E-value=32 Score=21.20 Aligned_cols=14 Identities=43% Similarity=0.902 Sum_probs=10.7
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2yti_A 12 PYKCNECGKVFTQN 25 (46)
T ss_dssp TTCCSSSCCCCSSH
T ss_pred CeECCCCCcccCCh
Confidence 44699999888764
No 376
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.56 E-value=32 Score=20.65 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=10.7
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 11 ~~~C~~C~k~f~~~ 24 (42)
T 2eos_A 11 PYPCEICGTRFRHL 24 (42)
T ss_dssp CBCCSSSCCCBSSH
T ss_pred CEECCCCCCccCCH
Confidence 44699999888764
No 377
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.45 E-value=1.2e+02 Score=18.12 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=14.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHh
Q 004419 420 EGRDPRDLMEIKESERRAHSQAEVLKN 446 (754)
Q Consensus 420 ~~~~~~~~~~l~~~~~~~~~~l~~l~~ 446 (754)
....+..+..+..++..++..+..+..
T Consensus 15 egfspeelaaleselqalekklaalks 41 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALKS 41 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555544
No 378
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.29 E-value=25 Score=25.33 Aligned_cols=43 Identities=21% Similarity=0.498 Sum_probs=28.7
Q ss_pred ccccccccccccc-----ceeccCCCcccHHHHHHHhccCCCCccccCc
Q 004419 699 ILKCGVCFDRPKE-----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGT 742 (754)
Q Consensus 699 ~~~C~iC~~~~~~-----~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~ 742 (754)
.-.|..|...|.- .+--.|.|..|..|--.... +.-.|-+|..
T Consensus 25 ~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~~~-~~W~C~VC~k 72 (76)
T 2csz_A 25 DRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQESN-GTWRCKVCSG 72 (76)
T ss_dssp CCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEECST-TCEEEHHHHS
T ss_pred ccchhhhCccccccccCCCcCcccChhhcccccccCCC-CCEEEeeCch
Confidence 3689999887742 44447999999999754433 2335777654
No 379
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.28 E-value=35 Score=24.91 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=12.5
Q ss_pred cccccccccccc-cceeccCCCcc
Q 004419 699 ILKCGVCFDRPK-EVVITKCFHLF 721 (754)
Q Consensus 699 ~~~C~iC~~~~~-~~~~~~CgH~f 721 (754)
...|+.|...+. ..++..-|+.|
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~w 38 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQW 38 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEE
T ss_pred CCCCcCcCCeeCCCeEEEECCccc
Confidence 357888877664 33333334444
No 380
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.26 E-value=54 Score=25.89 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=25.7
Q ss_pred cccccccccccc---ceeccCCCcccHHHHHHHhcc
Q 004419 700 LKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEI 732 (754)
Q Consensus 700 ~~C~iC~~~~~~---~~~~~CgH~fC~~C~~~~~~~ 732 (754)
+.|..|...+.+ +....=|..||..|....+..
T Consensus 31 F~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp CCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS
T ss_pred CcccccCCchhcCCCeeEEECCeeechHHHHHHhCc
Confidence 689999888863 455567889999999887664
No 381
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=24.16 E-value=15 Score=27.17 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=7.8
Q ss_pred CccccCcCcCC
Q 004419 736 KCPGCGTAFGQ 746 (754)
Q Consensus 736 ~Cp~C~~~~~~ 746 (754)
.||+|+.+|-.
T Consensus 47 ~C~VCr~tFm~ 57 (86)
T 1wvk_A 47 QCKVCMQTFIC 57 (86)
T ss_dssp EETTTTEEECC
T ss_pred CChHhHhhHHh
Confidence 48888886643
No 382
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.02 E-value=34 Score=21.14 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=10.4
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2enh_A 12 PYECDVCRKAFSHH 25 (46)
T ss_dssp SCBCTTTCCBCSSS
T ss_pred CcCCCCcCchhCCH
Confidence 34688888888764
No 383
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=23.97 E-value=35 Score=22.14 Aligned_cols=9 Identities=22% Similarity=0.460 Sum_probs=5.9
Q ss_pred ccccccccc
Q 004419 699 ILKCGVCFD 707 (754)
Q Consensus 699 ~~~C~iC~~ 707 (754)
.+.||.|..
T Consensus 5 ~~~CP~C~~ 13 (50)
T 1pft_A 5 QKVCPACES 13 (50)
T ss_dssp CCSCTTTSC
T ss_pred cEeCcCCCC
Confidence 367888854
No 384
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=23.93 E-value=25 Score=26.00 Aligned_cols=11 Identities=18% Similarity=0.314 Sum_probs=8.1
Q ss_pred Ccccccccccc
Q 004419 698 AILKCGVCFDR 708 (754)
Q Consensus 698 ~~~~C~iC~~~ 708 (754)
..+.||-|...
T Consensus 26 ~~y~Cp~CG~~ 36 (83)
T 1vq8_Z 26 EDHACPNCGED 36 (83)
T ss_dssp SCEECSSSCCE
T ss_pred ccCcCCCCCCc
Confidence 34799999753
No 385
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=23.80 E-value=20 Score=21.22 Aligned_cols=13 Identities=23% Similarity=0.577 Sum_probs=9.1
Q ss_pred CCccccCcCcCCC
Q 004419 735 RKCPGCGTAFGQS 747 (754)
Q Consensus 735 ~~Cp~C~~~~~~~ 747 (754)
..||.|+..|...
T Consensus 7 ~~C~~C~k~f~~~ 19 (39)
T 1njq_A 7 YTCSFCKREFRSA 19 (39)
T ss_dssp EECTTTCCEESSH
T ss_pred eECCCCCcccCCH
Confidence 3588888877653
No 386
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=23.78 E-value=21 Score=22.66 Aligned_cols=20 Identities=30% Similarity=0.690 Sum_probs=11.2
Q ss_pred ccccccccccccceeccCCCcccHHH
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPC 725 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C 725 (754)
..|+-|. .|..| .|.+|..|
T Consensus 14 WkC~~C~-~~N~P-----l~r~C~rC 33 (46)
T 2c6a_A 14 WKCTSCN-EMNPP-----LPSHCNRC 33 (46)
T ss_dssp EECTTTC-CEECS-----SCSSCTTT
T ss_pred Eeccccc-ccCCC-----ccchhhHH
Confidence 4677775 45545 44555554
No 387
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.77 E-value=34 Score=21.05 Aligned_cols=14 Identities=43% Similarity=0.966 Sum_probs=10.6
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2eq2_A 12 PYQCNECGKAFSQT 25 (46)
T ss_dssp SSSCCSSCCCCSSH
T ss_pred CeECCCCCcccCCH
Confidence 45699999888764
No 388
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=23.74 E-value=36 Score=20.97 Aligned_cols=15 Identities=33% Similarity=0.793 Sum_probs=11.0
Q ss_pred CCCccccCcCcCCCC
Q 004419 734 HRKCPGCGTAFGQSD 748 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~d 748 (754)
...||.|+..|....
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2ely_A 12 PFKCVECGKGFSRRS 26 (46)
T ss_dssp SBCCSSSCCCBSSTT
T ss_pred CcccCccCcccCCHH
Confidence 446888888887654
No 389
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.70 E-value=5.9e+02 Score=25.88 Aligned_cols=68 Identities=13% Similarity=0.178 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004419 74 SKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLK 144 (754)
Q Consensus 74 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~l~ 144 (754)
......++..+..+++.+..++.+.......+-.+...+. .+...-...++++..++..++.++..++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLD---AEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555554444444444444444432 2333333455666666666666655554
No 390
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.62 E-value=31 Score=25.25 Aligned_cols=11 Identities=18% Similarity=0.338 Sum_probs=7.6
Q ss_pred ccccccccccc
Q 004419 700 LKCGVCFDRPK 710 (754)
Q Consensus 700 ~~C~iC~~~~~ 710 (754)
..|+.|...+.
T Consensus 16 ~~C~~C~~~I~ 26 (82)
T 2ehe_A 16 NTCAECQQLIG 26 (82)
T ss_dssp CBCTTTCCBCC
T ss_pred CcCccCCCccc
Confidence 36778877665
No 391
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=23.41 E-value=12 Score=25.21 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=10.5
Q ss_pred cCCcccccccccccc
Q 004419 696 CKAILKCGVCFDRPK 710 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~ 710 (754)
+-..+.||+|.....
T Consensus 7 lL~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 7 LLEILACPACHAPLE 21 (56)
T ss_dssp CTTSCCCSSSCSCEE
T ss_pred HHhheeCCCCCCcce
Confidence 445589999977543
No 392
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.27 E-value=35 Score=21.04 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=10.6
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2eoh_A 12 PYECKECRKTFIQI 25 (46)
T ss_dssp SCCCSSSCCCCSSH
T ss_pred CcCCCCcCchhCCH
Confidence 45699999888764
No 393
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.06 E-value=36 Score=20.92 Aligned_cols=14 Identities=29% Similarity=0.802 Sum_probs=10.6
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ep1_A 12 PYECSDCGKSFIKK 25 (46)
T ss_dssp SSCCSSSCCCCSSH
T ss_pred CcCCCCCCchhCCH
Confidence 45699999888754
No 394
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.00 E-value=35 Score=21.04 Aligned_cols=14 Identities=50% Similarity=0.907 Sum_probs=10.5
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2em6_A 12 CYKCDVCGKEFSQS 25 (46)
T ss_dssp CCBCSSSCCBCSSH
T ss_pred CeECCCCCcccCCH
Confidence 45699999888754
No 395
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=22.93 E-value=15 Score=26.67 Aligned_cols=14 Identities=29% Similarity=0.800 Sum_probs=10.2
Q ss_pred eccCCCcccHHHHH
Q 004419 714 ITKCFHLFCNPCIQ 727 (754)
Q Consensus 714 ~~~CgH~fC~~C~~ 727 (754)
.++|..-||..|..
T Consensus 19 ~T~Cn~CYCKkCcy 32 (86)
T 3mi9_C 19 KTACTNCYCKKCCF 32 (86)
T ss_dssp SSCCCSCCSTTGGG
T ss_pred CCCCCCccccchhh
Confidence 46788888877754
No 396
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=22.84 E-value=13 Score=29.01 Aligned_cols=13 Identities=15% Similarity=0.659 Sum_probs=9.7
Q ss_pred ccccccccccccc
Q 004419 699 ILKCGVCFDRPKE 711 (754)
Q Consensus 699 ~~~C~iC~~~~~~ 711 (754)
.+.|++|...|..
T Consensus 16 ~~~C~~C~~~f~~ 28 (107)
T 1wjp_A 16 VYQCRLCNAKLSS 28 (107)
T ss_dssp CCBCTTTCCBCSS
T ss_pred CeECCCCCCccCC
Confidence 4678888887765
No 397
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=22.83 E-value=7.4 Score=28.84 Aligned_cols=26 Identities=23% Similarity=0.686 Sum_probs=19.5
Q ss_pred CCcccHHHHHHHhccCCCCccccCcC
Q 004419 718 FHLFCNPCIQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 718 gH~fC~~C~~~~~~~~~~~Cp~C~~~ 743 (754)
-|+.|.-|....+......|-.|+-|
T Consensus 15 tHtlCrRCG~~syH~qK~~Ca~CGyp 40 (94)
T 4a18_A 15 THTLCRRCGKATYHKQKLRCAACGYP 40 (94)
T ss_dssp CEEECTTTCSEEEETTTTEESSSCGG
T ss_pred ccceecCcCchhhhhccccccccCCc
Confidence 47888888887777666678888765
No 398
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.79 E-value=35 Score=21.09 Aligned_cols=14 Identities=50% Similarity=0.847 Sum_probs=10.5
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2eon_A 12 PYKCQVCGKAFRVS 25 (46)
T ss_dssp SCBCSSSCCBCSSH
T ss_pred ccCCCCCCcccCcH
Confidence 44699998888764
No 399
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.69 E-value=36 Score=20.93 Aligned_cols=14 Identities=43% Similarity=0.864 Sum_probs=10.5
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2eq1_A 12 PYKCNECGKAFRAH 25 (46)
T ss_dssp CCCCTTTTCCCSSH
T ss_pred CeECCcCChhhCCH
Confidence 45699998888754
No 400
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.68 E-value=35 Score=21.02 Aligned_cols=14 Identities=36% Similarity=0.821 Sum_probs=10.5
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2yth_A 12 PFQCEECGKRFTQN 25 (46)
T ss_dssp SBCCSSSCCCBSSH
T ss_pred CCCCCCCCcccCCH
Confidence 34699999888764
No 401
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.31 E-value=24 Score=23.10 Aligned_cols=10 Identities=40% Similarity=1.245 Sum_probs=6.5
Q ss_pred CCCccccCcC
Q 004419 734 HRKCPGCGTA 743 (754)
Q Consensus 734 ~~~Cp~C~~~ 743 (754)
.+.||.|+.+
T Consensus 19 ~k~CP~CG~~ 28 (50)
T 3j20_Y 19 NKFCPRCGPG 28 (50)
T ss_dssp SEECSSSCSS
T ss_pred cccCCCCCCc
Confidence 3458888763
No 402
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=22.20 E-value=18 Score=31.49 Aligned_cols=45 Identities=22% Similarity=0.566 Sum_probs=26.5
Q ss_pred Cccccccccccccc---ceec-cCCCcccHHHHHHHhc----cCCCCccccCcC
Q 004419 698 AILKCGVCFDRPKE---VVIT-KCFHLFCNPCIQRNLE----IRHRKCPGCGTA 743 (754)
Q Consensus 698 ~~~~C~iC~~~~~~---~~~~-~CgH~fC~~C~~~~~~----~~~~~Cp~C~~~ 743 (754)
....| +|...+.. .+.. .|..-|...|+.-... ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34678 89877642 2222 6777777778742211 234469999753
No 403
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=22.18 E-value=19 Score=25.28 Aligned_cols=51 Identities=25% Similarity=0.429 Sum_probs=27.5
Q ss_pred Ccccccccccccccceec-cCCCcccHHHHHHHhcc---CCCCccccCcCcCCCCC
Q 004419 698 AILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEI---RHRKCPGCGTAFGQSDV 749 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~---~~~~Cp~C~~~~~~~d~ 749 (754)
....|.||.+. .+.+.- .|...|-..|+...+.. ..-.||.|...-...+.
T Consensus 7 ~~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~~~~ 61 (66)
T 1xwh_A 7 NEDECAVCRDG-GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQ 61 (66)
T ss_dssp CCCSBSSSSCC-SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCCCCC
T ss_pred CCCCCccCCCC-CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcccccCc
Confidence 34679999764 222221 56555555566532221 23359999766555443
No 404
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.12 E-value=38 Score=20.57 Aligned_cols=14 Identities=36% Similarity=0.904 Sum_probs=10.4
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (44)
T 2eou_A 12 TSECQECGKIFRHS 25 (44)
T ss_dssp CCCCTTTCCCCSSH
T ss_pred CeECCCCCcccCCH
Confidence 44699999888754
No 405
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.08 E-value=36 Score=20.97 Aligned_cols=14 Identities=29% Similarity=0.719 Sum_probs=10.4
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2emg_A 12 PFICSECGKVFTHK 25 (46)
T ss_dssp SCBCTTTCCBCSSH
T ss_pred CEECCccCcccCCH
Confidence 34699998888764
No 406
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=21.97 E-value=14 Score=34.93 Aligned_cols=9 Identities=33% Similarity=0.737 Sum_probs=5.1
Q ss_pred ccccccccc
Q 004419 700 LKCGVCFDR 708 (754)
Q Consensus 700 ~~C~iC~~~ 708 (754)
.-|+.|+..
T Consensus 108 ~fC~~CG~~ 116 (269)
T 1vk6_A 108 KYCGYCGHE 116 (269)
T ss_dssp SBCTTTCCB
T ss_pred CccccCCCc
Confidence 456666544
No 407
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.85 E-value=39 Score=20.82 Aligned_cols=14 Identities=36% Similarity=0.861 Sum_probs=10.5
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2eom_A 12 GHRCSDCGKFFLQA 25 (46)
T ss_dssp SCCCSSSCCCCSSH
T ss_pred CcCCCCCCCeeCCh
Confidence 44699998888754
No 408
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.71 E-value=39 Score=20.46 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=10.5
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 10 ~~~C~~C~k~f~~~ 23 (43)
T 2yrm_A 10 AFFCNECDCRFSEE 23 (43)
T ss_dssp CBCCSSSCCCBSSH
T ss_pred CEECCCCCCeeCCh
Confidence 44699999888754
No 409
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.68 E-value=37 Score=25.48 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=14.4
Q ss_pred ccccccccccccc-ceeccCCCcc
Q 004419 699 ILKCGVCFDRPKE-VVITKCFHLF 721 (754)
Q Consensus 699 ~~~C~iC~~~~~~-~~~~~CgH~f 721 (754)
...|+.|...+.. ..+..-|..|
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~ 38 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVF 38 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEE
T ss_pred CCcCccCCCccCCceeEEECCCEE
Confidence 3589999887753 3445555444
No 410
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.68 E-value=38 Score=20.88 Aligned_cols=14 Identities=43% Similarity=0.710 Sum_probs=10.3
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2en9_A 12 LFKCNECKKTFTQS 25 (46)
T ss_dssp CCBCTTTCCBCSSH
T ss_pred CEECCccCcccCCH
Confidence 44688898888753
No 411
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=21.58 E-value=39 Score=24.56 Aligned_cols=30 Identities=20% Similarity=0.637 Sum_probs=22.2
Q ss_pred ccccccccccc-c--cceeccCCCcccHHHHHH
Q 004419 699 ILKCGVCFDRP-K--EVVITKCFHLFCNPCIQR 728 (754)
Q Consensus 699 ~~~C~iC~~~~-~--~~~~~~CgH~fC~~C~~~ 728 (754)
.+.|.+|.... . ....+.|.-.||..|+..
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 46899997543 2 244458999999999996
No 412
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=21.37 E-value=28 Score=39.23 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=19.0
Q ss_pred ccccccccccccceeccCCCcccH
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCN 723 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~ 723 (754)
..|..|...-.-.+.+.|||++|.
T Consensus 216 ~~C~~c~~~~~lw~CL~Cg~vgC~ 239 (854)
T 3ihp_A 216 WKCSKCDMRENLWLNLTDGSILCG 239 (854)
T ss_dssp CCCSSSCCCSSEEEETTTCCEEEC
T ss_pred CcCcCcCCcCceEEEecCCCcccc
Confidence 478888776666788899999984
No 413
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.29 E-value=2.4e+02 Score=20.42 Aligned_cols=14 Identities=7% Similarity=0.143 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 004419 83 EAKNLHEVMEIIHL 96 (754)
Q Consensus 83 ~~~~l~~~~~~l~~ 96 (754)
.+.....++..+..
T Consensus 19 ~~~q~qaEl~sLrr 32 (78)
T 3iv1_A 19 EMDRAQAELNALKR 32 (78)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHH
Confidence 33333333333333
No 414
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.21 E-value=41 Score=20.71 Aligned_cols=14 Identities=43% Similarity=1.006 Sum_probs=10.5
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2emz_A 12 PFKCNECGKGFGRR 25 (46)
T ss_dssp SCCCSSSCCCCSSH
T ss_pred CeECCCCCcccCCH
Confidence 44699998888764
No 415
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=21.03 E-value=24 Score=30.38 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=17.8
Q ss_pred ccccccccccccceeccCCCcccHHHHHH
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQR 728 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~ 728 (754)
+.|+-|+..|... =.+.||..|...
T Consensus 133 y~C~~Cg~~~~~~----~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 133 YVCIGCGRKFSTL----PPGGVCPDCGSK 157 (165)
T ss_dssp EEESSSCCEESSC----CGGGBCTTTCCB
T ss_pred EECCCCCCcccCC----CCCCcCCCCCCc
Confidence 6899999999743 124577777654
No 416
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.93 E-value=70 Score=23.24 Aligned_cols=48 Identities=27% Similarity=0.615 Sum_probs=27.5
Q ss_pred ccccccccccc-cceec---cCCCcccHHHHHHHhc----cCCCCccccCcCcCCCC
Q 004419 700 LKCGVCFDRPK-EVVIT---KCFHLFCNPCIQRNLE----IRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 700 ~~C~iC~~~~~-~~~~~---~CgH~fC~~C~~~~~~----~~~~~Cp~C~~~~~~~d 748 (754)
..| +|...+. ....+ .|..-|-..|+.-... .....||.|+....++-
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~~ 68 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSI 68 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSCB
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCCCc
Confidence 466 7987764 22222 5665565666642211 23456999998776543
No 417
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=20.75 E-value=13 Score=27.96 Aligned_cols=26 Identities=23% Similarity=0.712 Sum_probs=14.4
Q ss_pred CCcccHHHHHHHhccCCCCccccCcC
Q 004419 718 FHLFCNPCIQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 718 gH~fC~~C~~~~~~~~~~~Cp~C~~~ 743 (754)
-|++|.-|....+......|-.|+-+
T Consensus 15 tH~lCrRCG~~sfH~qK~~CgkCGYp 40 (97)
T 2zkr_2 15 THTLCRRCGSKAYHLQKSTCGKCGYP 40 (97)
T ss_dssp CEECCTTTCSSCEETTSCCBTTTCTT
T ss_pred CCCcCCCCCCccCcCccccCcccCCc
Confidence 35556666555554434457777643
No 418
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.72 E-value=41 Score=20.65 Aligned_cols=14 Identities=36% Similarity=0.831 Sum_probs=10.4
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2eov_A 12 PYKCSDCGKSFTWK 25 (46)
T ss_dssp SCBCSSSCCBCSSH
T ss_pred CccCCccChhhCCH
Confidence 44699998888754
No 419
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.64 E-value=1.7e+02 Score=29.31 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 639 YEQIQRKTEDMRKELENERNERKKLEEELMEVN 671 (754)
Q Consensus 639 ~~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~~~ 671 (754)
+..+...+..+...+...+....++-.++..++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 26 IKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333333333333333333333444444444443
No 420
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.62 E-value=27 Score=21.59 Aligned_cols=14 Identities=36% Similarity=0.638 Sum_probs=10.0
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
...||.|+..|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2eoy_A 12 CFKCNKCEKTFSCS 25 (46)
T ss_dssp CEECSSSCCEESSS
T ss_pred CEECcCCCCcCCCH
Confidence 34588888888764
No 421
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=20.46 E-value=35 Score=23.41 Aligned_cols=46 Identities=24% Similarity=0.483 Sum_probs=25.0
Q ss_pred Ccccccccccccccceec-cCCCcccHHHHHHHhcc---CCCCccccCcCc
Q 004419 698 AILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEI---RHRKCPGCGTAF 744 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~---~~~~Cp~C~~~~ 744 (754)
....|.||.+.- +.+.- .|...|-..|+...+.. ..-.||.|....
T Consensus 8 ~~~~C~vC~~~g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDGG-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCCS-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCCC-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 346799997632 21111 56556666666533221 233599997643
No 422
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=20.46 E-value=13 Score=27.66 Aligned_cols=34 Identities=21% Similarity=0.604 Sum_probs=0.0
Q ss_pred CcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 719 HLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 719 H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
|+.|.-|....+......|-.|+-| +..--..+|
T Consensus 16 HtlCrRCG~~syH~qK~~Ca~CGyp-s~r~R~YnW 49 (94)
T 3iz5_l 16 HTLCVRCGRRSFHLQKSTCSSCGYP-AARIRKYNW 49 (94)
T ss_dssp EEECTTTCSEEEEGGGTEETTTCSS-CSSCCCCSS
T ss_pred cceecCcCchhhhcccccccccCCc-hhhcccccH
No 423
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=20.44 E-value=31 Score=26.62 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=0.0
Q ss_pred cccccccccccce----eccCCCccc
Q 004419 701 KCGVCFDRPKEVV----ITKCFHLFC 722 (754)
Q Consensus 701 ~C~iC~~~~~~~~----~~~CgH~fC 722 (754)
.|..|...-...+ -+.|||+.|
T Consensus 20 ~C~~C~~~~~~Wv~LwlCL~CG~VGC 45 (102)
T 2ida_A 20 GCEECLKIGSPWVHLRICRTCGHVGC 45 (102)
T ss_dssp SCHHHHTTTCCCSCBEEESSSCCCCB
T ss_pred cCccccccCCcchheeeeeEcCCCcc
No 424
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.37 E-value=2.9e+02 Score=27.68 Aligned_cols=56 Identities=7% Similarity=0.032 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 004419 490 RDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLV 545 (754)
Q Consensus 490 ~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 545 (754)
.++..+..++..++.+...+...+..++..+.++...+.........+-..+.++.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 425
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.26 E-value=42 Score=20.64 Aligned_cols=14 Identities=43% Similarity=0.945 Sum_probs=0.0
Q ss_pred CCCCccccCcCcCC
Q 004419 733 RHRKCPGCGTAFGQ 746 (754)
Q Consensus 733 ~~~~Cp~C~~~~~~ 746 (754)
+...||.|+..|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2ytn_A 11 KPYKCNECGKVFTQ 24 (46)
T ss_dssp SSCBCTTTCCBCSS
T ss_pred cCeECCCCCCeeCC
No 426
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.21 E-value=17 Score=24.69 Aligned_cols=35 Identities=17% Similarity=0.492 Sum_probs=0.0
Q ss_pred CcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 719 HLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 719 H~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
|+.|.-|....+......|..|+-+-+..--..+|
T Consensus 17 H~lCrRCG~~syH~qK~~Ca~CGygps~r~R~YnW 51 (62)
T 3j21_e 17 HIRCRRCGRVSYNVKKGYCAACGFGRSRRLRKYRW 51 (62)
T ss_dssp CCBCSSSCSBCEETTTTEETTTCTTTCSSCCCCTT
T ss_pred eeeecccCcchhccccccccccCCchhhhhccccH
No 427
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.19 E-value=28 Score=21.18 Aligned_cols=12 Identities=42% Similarity=0.941 Sum_probs=0.0
Q ss_pred CccccCcCcCCC
Q 004419 736 KCPGCGTAFGQS 747 (754)
Q Consensus 736 ~Cp~C~~~~~~~ 747 (754)
.||.|+..|...
T Consensus 14 ~C~~C~k~f~~~ 25 (44)
T 2yu5_A 14 KCSKCDRVFTQR 25 (44)
T ss_dssp ECSSSSCEESSS
T ss_pred ECCCCCchhCCH
No 428
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.08 E-value=45 Score=20.48 Aligned_cols=14 Identities=36% Similarity=0.743 Sum_probs=0.0
Q ss_pred CCCCccccCcCcCC
Q 004419 733 RHRKCPGCGTAFGQ 746 (754)
Q Consensus 733 ~~~~Cp~C~~~~~~ 746 (754)
+...||.|+..|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2eoq_A 11 KPFKCDICGKSFCG 24 (46)
T ss_dssp CSCCCSSSCCCCSS
T ss_pred CCcCCCcCCchhCC
No 429
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=20.07 E-value=27 Score=20.94 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=0.0
Q ss_pred CCCCccccCcCcCC
Q 004419 733 RHRKCPGCGTAFGQ 746 (754)
Q Consensus 733 ~~~~Cp~C~~~~~~ 746 (754)
+...||.|+..|..
T Consensus 10 ~~~~C~~C~k~f~~ 23 (42)
T 2epc_A 10 TPYLCGQCGKSFTQ 23 (42)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCeECCCCCcccCC
No 430
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=20.05 E-value=41 Score=23.03 Aligned_cols=41 Identities=20% Similarity=0.553 Sum_probs=0.0
Q ss_pred ccccccccccceeccCCCcccHHHHHH---HhccCCCCccccCc
Q 004419 702 CGVCFDRPKEVVITKCFHLFCNPCIQR---NLEIRHRKCPGCGT 742 (754)
Q Consensus 702 C~iC~~~~~~~~~~~CgH~fC~~C~~~---~~~~~~~~Cp~C~~ 742 (754)
|.+|...-.-..--.|...|-..|+.. ......-.||.|..
T Consensus 14 C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 14 CEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Done!