BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004420
         (754 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DEP|A Chain A, Crystal Structure Of Xylanase B From Clostridium
           Stercorarium F9
 pdb|2DEP|B Chain B, Crystal Structure Of Xylanase B From Clostridium
           Stercorarium F9
          Length = 356

 Score = 31.6 bits (70), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 59  CSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQMKPSDDGKMQRNRKSSRCGC 118
             FAK+ G  +R H       V    T   F   + G P ++ +D  K + NRK      
Sbjct: 69  VQFAKENGMELRFHTL-----VWHNQTPDWFFLDKEGKPMVEETDPQKREENRKLLLQRL 123

Query: 119 QAYMR-IVKRVDFDVPEWHVT 138
           + Y+R +V R   D+  W V 
Sbjct: 124 ENYIRAVVLRYKDDIKSWDVV 144


>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
           Aminopeptidase N (Apn) As A Target For Anticancer Drug
           Development
 pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
           Aminopeptidase N (Apn) As A Target For Anticancer Drug
           Development
          Length = 780

 Score = 30.0 bits (66), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 21/29 (72%)

Query: 205 DVRNLLQSFRNVNRDYDAIDLIAMCKKMK 233
           D++ LL+ FR+V+RD D + +I+   K+K
Sbjct: 635 DLKGLLEKFRSVDRDEDRVRIISAFGKLK 663


>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
           From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
           Three Different Conformations
 pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
           From Thermoplasma Acidophilum
 pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
           From Thermoplasma Acidophilum
          Length = 780

 Score = 30.0 bits (66), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 21/29 (72%)

Query: 205 DVRNLLQSFRNVNRDYDAIDLIAMCKKMK 233
           D++ LL+ FR+V+RD D + +I+   K+K
Sbjct: 635 DLKGLLEKFRSVDRDEDRVRIISAFGKLK 663


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,340,659
Number of Sequences: 62578
Number of extensions: 911749
Number of successful extensions: 1674
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1672
Number of HSP's gapped (non-prelim): 3
length of query: 754
length of database: 14,973,337
effective HSP length: 106
effective length of query: 648
effective length of database: 8,340,069
effective search space: 5404364712
effective search space used: 5404364712
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)