Query 004421
Match_columns 754
No_of_seqs 377 out of 2234
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 00:42:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmq_A Heat shock protein HSP 99.9 1.8E-22 6.1E-27 208.1 8.1 168 237-415 21-218 (239)
2 3peh_A Endoplasmin homolog; st 99.9 3.4E-22 1.2E-26 210.1 9.6 168 237-415 28-227 (281)
3 1y4s_A Chaperone protein HTPG; 99.8 5.6E-20 1.9E-24 209.5 21.5 170 237-415 9-209 (559)
4 3ied_A Heat shock protein; HSP 99.8 6.6E-21 2.3E-25 197.4 9.9 167 237-415 29-268 (272)
5 1qy5_A Endoplasmin; GRP94, NEC 99.8 3.6E-21 1.2E-25 201.8 7.0 162 242-415 16-212 (269)
6 3t0h_A Heat shock protein HSP 99.8 1.1E-20 3.6E-25 194.0 8.0 169 236-415 13-211 (228)
7 2gqp_A Endoplasmin; GRP94, HSP 99.8 1.4E-20 4.8E-25 193.8 8.4 167 237-415 14-216 (236)
8 3o0i_A HSP90AA1 protein; HSP90 99.8 1.6E-20 5.4E-25 195.4 8.3 169 236-415 41-239 (256)
9 1yc1_A HSP 86, heat shock prot 99.8 3.9E-20 1.3E-24 193.5 9.8 163 242-415 56-247 (264)
10 2wer_A ATP-dependent molecular 99.8 7E-20 2.4E-24 186.3 10.1 168 237-415 8-206 (220)
11 2cg9_A ATP-dependent molecular 99.8 3.7E-19 1.3E-23 206.0 12.8 169 237-416 8-207 (677)
12 2ior_A Chaperone protein HTPG; 99.8 2.9E-19 9.8E-24 183.8 8.2 165 242-415 35-229 (235)
13 2ioq_A Chaperone protein HTPG; 99.8 3.7E-19 1.3E-23 205.0 6.9 170 237-415 9-209 (624)
14 2o1u_A Endoplasmin; GRP94, HSP 99.7 4.7E-19 1.6E-23 205.0 6.7 162 242-415 33-229 (666)
15 2e61_A Zinc finger CW-type PWW 99.7 3.7E-17 1.3E-21 138.3 5.0 55 637-691 9-67 (69)
16 1b63_A MUTL; DNA mismatch repa 99.6 3.3E-14 1.1E-18 152.9 21.4 110 234-353 3-119 (333)
17 2l7p_A Histone-lysine N-methyl 99.6 1.4E-16 4.8E-21 143.4 0.2 59 637-695 19-80 (100)
18 3h4l_A DNA mismatch repair pro 99.3 1.4E-12 5E-17 142.1 8.4 139 236-387 6-150 (367)
19 1h7s_A PMS1 protein homolog 2; 99.3 7.6E-12 2.6E-16 136.4 9.9 139 236-387 15-160 (365)
20 3na3_A DNA mismatch repair pro 99.2 1.2E-11 4.2E-16 133.9 9.9 139 236-387 9-154 (348)
21 1ei1_A DNA gyrase B, GYRB; ATP 99.0 4.4E-09 1.5E-13 115.7 16.4 89 254-352 34-137 (391)
22 3fv5_A DNA topoisomerase 4 sub 98.8 6.5E-09 2.2E-13 104.6 9.8 120 255-388 18-155 (201)
23 1s16_A Topoisomerase IV subuni 98.8 2.1E-07 7.3E-12 102.3 22.0 287 256-627 33-361 (390)
24 3cwv_A DNA gyrase, B subunit, 98.8 1.2E-07 3.9E-12 103.7 19.1 288 254-627 30-347 (369)
25 1kij_A DNA gyrase subunit B; t 98.7 6.3E-07 2.2E-11 98.5 21.9 89 254-352 32-135 (390)
26 1zxm_A TOPO IIA ATPase, DNA to 98.6 1.4E-07 5E-12 103.9 10.2 89 254-351 52-156 (400)
27 4duh_A DNA gyrase subunit B; s 98.5 1.4E-07 4.9E-12 96.2 8.9 159 254-437 35-210 (220)
28 4emv_A DNA topoisomerase IV, B 98.5 3.3E-07 1.1E-11 93.9 9.7 177 234-437 22-216 (226)
29 1mu5_A Type II DNA topoisomera 98.3 9.4E-07 3.2E-11 99.3 9.9 96 254-353 32-137 (471)
30 2zbk_B Type 2 DNA topoisomeras 98.3 8.6E-07 2.9E-11 101.0 9.1 96 254-353 31-136 (530)
31 3lnu_A Topoisomerase IV subuni 98.2 1.8E-06 6.1E-11 95.4 7.9 120 256-389 52-189 (408)
32 2q2e_B Type 2 DNA topoisomeras 98.1 2.3E-06 7.9E-11 99.1 6.1 95 254-353 37-141 (621)
33 3ttz_A DNA gyrase subunit B; p 97.9 2.3E-05 7.8E-10 78.7 9.3 146 254-437 31-183 (198)
34 1pvg_A DNA topoisomerase II; G 97.9 3E-05 1E-09 86.0 9.3 122 255-389 65-207 (418)
35 1id0_A PHOQ histidine kinase; 97.7 5.1E-05 1.8E-09 69.7 7.4 85 255-350 45-132 (152)
36 1bxd_A ENVZ(290-450), protein 97.6 9.2E-05 3.1E-09 69.1 7.5 88 255-351 48-138 (161)
37 2c2a_A Sensor histidine kinase 97.5 0.00013 4.5E-09 73.1 6.5 90 255-351 139-236 (258)
38 1ysr_A Sensor-type histidine k 97.4 0.00022 7.5E-09 65.5 7.3 86 255-350 47-136 (150)
39 1i58_A Chemotaxis protein CHEA 97.4 7.9E-05 2.7E-09 71.5 3.3 47 255-307 48-108 (189)
40 4ew8_A Sensor protein DIVL; si 97.3 0.00029 9.9E-09 70.6 7.2 83 255-350 156-243 (268)
41 2q8g_A [pyruvate dehydrogenase 97.3 0.00021 7E-09 77.9 6.0 91 255-351 244-351 (407)
42 2e0a_A Pyruvate dehydrogenase 97.3 0.00023 8E-09 77.1 6.1 90 255-350 231-337 (394)
43 1th8_A Anti-sigma F factor; SP 97.3 0.0003 1E-08 64.8 5.9 83 254-350 39-126 (145)
44 3d36_A Sporulation kinase B; G 97.3 0.00039 1.3E-08 68.2 7.0 85 255-351 124-213 (244)
45 3a0y_A Sensor protein; ATP-LID 97.2 0.00023 8E-09 64.9 4.5 82 255-349 48-135 (152)
46 1y8o_A [pyruvate dehydrogenase 97.2 0.00024 8.3E-09 77.8 5.4 90 255-350 254-361 (419)
47 1gkz_A [3-methyl-2-oxobutanoat 97.2 0.00017 6E-09 77.8 3.8 91 255-351 239-361 (388)
48 2btz_A Pyruvate dehydrogenase 97.2 0.00026 8.9E-09 76.7 5.1 91 255-351 232-338 (394)
49 3jz3_A Sensor protein QSEC; he 97.2 0.00021 7.3E-09 69.1 4.0 85 255-351 118-205 (222)
50 3sl2_A Sensor histidine kinase 97.1 0.00034 1.2E-08 66.3 5.1 92 255-351 44-140 (177)
51 3zxo_A Redox sensor histidine 97.1 0.00063 2.2E-08 60.8 6.2 69 254-351 43-115 (129)
52 3ehg_A Sensor kinase (YOCF pro 97.1 0.00028 9.5E-09 63.9 3.3 71 255-350 41-115 (128)
53 1b3q_A Protein (chemotaxis pro 97.0 0.00066 2.3E-08 73.6 6.2 88 256-351 108-236 (379)
54 1r62_A Nitrogen regulation pro 97.0 0.00017 6E-09 66.2 1.2 90 255-351 49-148 (160)
55 3ehh_A Sensor kinase (YOCF pro 96.8 0.00075 2.6E-08 65.6 4.6 71 255-350 131-205 (218)
56 3a0r_A Sensor protein; four he 96.6 0.0011 3.6E-08 68.7 4.1 82 255-349 245-332 (349)
57 3zxq_A Hypoxia sensor histidin 96.0 0.0044 1.5E-07 55.0 4.1 46 254-306 39-85 (124)
58 4gfh_A DNA topoisomerase 2; to 95.9 0.026 8.7E-07 69.9 11.0 86 255-349 60-161 (1177)
59 4fpp_A Phosphotransferase; fou 93.5 0.051 1.7E-06 54.9 4.3 82 255-349 147-235 (247)
60 4gut_A Lysine-specific histone 93.3 0.011 3.8E-07 70.2 -1.0 46 644-689 91-146 (776)
61 3o70_A PHD finger protein 13; 92.4 0.066 2.3E-06 44.8 2.7 32 643-674 30-62 (68)
62 3o7a_A PHD finger protein 13 v 91.5 0.07 2.4E-06 42.1 1.8 32 643-674 15-47 (52)
63 1we9_A PHD finger family prote 90.8 0.12 4.3E-06 42.1 2.7 36 640-675 16-54 (64)
64 1wee_A PHD finger family prote 89.9 0.21 7.1E-06 41.9 3.3 31 644-674 29-61 (72)
65 2lv9_A Histone-lysine N-methyl 89.6 0.16 5.6E-06 45.2 2.6 33 643-675 39-72 (98)
66 3ke6_A Protein RV1364C/MT1410; 88.5 0.33 1.1E-05 52.8 4.7 47 254-305 297-348 (399)
67 3kqi_A GRC5, PHD finger protei 81.2 0.37 1.3E-05 40.7 0.5 35 641-675 20-57 (75)
68 1wep_A PHF8; structural genomi 80.3 0.2 7E-06 42.7 -1.4 33 642-674 23-58 (79)
69 2rsd_A E3 SUMO-protein ligase 76.7 1.3 4.6E-05 36.6 2.6 32 643-674 21-60 (68)
70 1ixm_A SPO0B, protein (sporula 76.5 1.2 4.3E-05 44.0 2.8 36 271-312 130-167 (192)
71 2ri7_A Nucleosome-remodeling f 74.7 0.53 1.8E-05 45.4 -0.5 34 642-675 19-55 (174)
72 2k16_A Transcription initiatio 74.4 0.81 2.8E-05 38.4 0.7 32 643-674 30-63 (75)
73 2kgg_A Histone demethylase jar 74.3 1.1 3.9E-05 35.1 1.5 35 640-674 12-49 (52)
74 1wew_A DNA-binding family prot 74.1 0.92 3.1E-05 38.6 0.9 33 642-674 26-67 (78)
75 2vpb_A Hpygo1, pygopus homolog 71.5 1.3 4.5E-05 36.6 1.3 19 640-658 18-37 (65)
76 1weu_A Inhibitor of growth fam 59.3 4 0.00014 36.1 2.0 30 644-674 47-80 (91)
77 1wem_A Death associated transc 55.9 3.3 0.00011 34.7 0.9 32 643-674 27-65 (76)
78 1wen_A Inhibitor of growth fam 55.9 5.7 0.00019 33.3 2.3 30 644-674 27-60 (71)
79 2g6q_A Inhibitor of growth pro 49.6 5.7 0.00019 32.4 1.3 30 644-674 22-55 (62)
80 3c6w_A P28ING5, inhibitor of g 49.0 5.9 0.0002 32.0 1.3 30 644-674 20-53 (59)
81 3pur_A Lysine-specific demethy 47.0 7 0.00024 44.5 1.9 36 640-675 52-90 (528)
82 3lqh_A Histone-lysine N-methyl 44.6 7.7 0.00026 38.3 1.6 32 644-675 19-59 (183)
83 3kv5_D JMJC domain-containing 43.5 3.4 0.00011 46.7 -1.4 36 640-675 46-84 (488)
84 1ow1_A Smart/HDAC1 associated 42.9 13 0.00043 37.3 2.8 29 88-116 128-163 (195)
85 2jmi_A Protein YNG1, ING1 homo 42.7 11 0.00039 33.0 2.2 30 644-674 37-70 (90)
86 2vnf_A ING 4, P29ING4, inhibit 40.2 9.7 0.00033 30.7 1.3 30 644-674 21-54 (60)
87 2xb1_A Pygopus homolog 2, B-ce 39.7 9.6 0.00033 34.2 1.3 36 640-675 13-57 (105)
88 2kvo_A Photosystem II reaction 34.1 9.7 0.00033 35.3 0.4 16 83-98 86-101 (120)
89 2ku7_A MLL1 PHD3-CYP33 RRM chi 31.4 11 0.00037 33.8 0.2 12 646-657 2-13 (140)
90 1x4i_A Inhibitor of growth pro 28.7 15 0.00051 30.6 0.6 31 643-674 16-50 (70)
No 1
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.86 E-value=1.8e-22 Score=208.13 Aligned_cols=168 Identities=22% Similarity=0.308 Sum_probs=128.0
Q ss_pred eecC-HHHHHHhhccccCCHHHHHHHHHhcccccCCC----------------ccEEEEEecccccCCCCcCEEEEEeCC
Q 004421 237 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSIIDDG 299 (754)
Q Consensus 237 ~~v~-p~fL~slst~h~~~pf~AIaELIDNS~DAgAt----------------~V~I~I~~~~~~~~~~~~~~L~I~DNG 299 (754)
++++ .+.|+.++.+.|++...+|+|||+||.||.+. .+.|.|.. +.+...|+|.|||
T Consensus 21 Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~L~I~DnG 94 (239)
T 3nmq_A 21 FQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIP------NPQERTLTLVDTG 94 (239)
T ss_dssp CCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred ehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------eCCccEEEEEeCC
Confidence 5555 45778888888999999999999999999642 35666653 2346899999999
Q ss_pred CCCCHHhHHHhh-hcccCCC--------CCCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeE
Q 004421 300 HGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL 370 (754)
Q Consensus 300 ~GMt~eel~~~l-~fG~S~k--------~~~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~g~~~i 370 (754)
+||+++++.+.| .++.|.+ ...+...||+||+||+|++| +|++|+|.||+.+. .++.|.+. +...+
T Consensus 95 iGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~-vadkv~V~Sk~~~~--~~~~W~s~--~~g~f 169 (239)
T 3nmq_A 95 IGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVVVITKHNDD--EQYAWESS--AGGSF 169 (239)
T ss_dssp CCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEEC--STTEE
T ss_pred CCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccc-cCCEEEEEEeeCCC--ceeEEEEC--CCCcE
Confidence 999999997765 3544321 12357899999999998865 99999999999764 46777763 33456
Q ss_pred EEeccc--cCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHH
Q 004421 371 EIPIVS--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (754)
Q Consensus 371 ~VPi~s--~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySPF~s~pI~ 415 (754)
.|.... -..+||+|+|+++++. ++..++.++. |.+||.|..+||.
T Consensus 170 ti~~~~~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~ 218 (239)
T 3nmq_A 170 TVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPIT 218 (239)
T ss_dssp EEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEE
T ss_pred EEEecCCCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceE
Confidence 654322 2358999999999765 6777788765 9999999998886
No 2
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.86 E-value=3.4e-22 Score=210.08 Aligned_cols=168 Identities=24% Similarity=0.347 Sum_probs=127.6
Q ss_pred eecC-HHHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCcCEEEEEeCC
Q 004421 237 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 299 (754)
Q Consensus 237 ~~v~-p~fL~slst~h~~~pf~AIaELIDNS~DAgA----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG 299 (754)
+++. .+.|..++.+.|++...+|+|||+||+||.+ ..+.|.|.. +.+...|+|.|||
T Consensus 28 Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~------d~~~~tLtI~DNG 101 (281)
T 3peh_A 28 YQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISA------NKEKNILSITDTG 101 (281)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred ehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEE------cCCCcEEEEEeCC
Confidence 5555 3466777888889999999999999999964 345666653 2345799999999
Q ss_pred CCCCHHhHHHhh-hcccCCCC---------CCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCee
Q 004421 300 HGMTHQDVVRMT-YFGHKQPD---------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 369 (754)
Q Consensus 300 ~GMt~eel~~~l-~fG~S~k~---------~~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~g~~~ 369 (754)
+||++++|.+.| .++.|.+. ..+...||+||+||+||+| +|++|+|+||+.+. .++.|.+-. ...
T Consensus 102 iGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~-vadkV~V~Sk~~~~--~~~~Wes~g--~g~ 176 (281)
T 3peh_A 102 IGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNDD--EQYIWESTA--DAK 176 (281)
T ss_dssp CCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEEET--TSC
T ss_pred CCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc-ccCEEEEEEecCCC--CEEEEEECC--Ccc
Confidence 999999998876 35555321 2357899999999998866 99999999999875 477777643 334
Q ss_pred EEEe-cc--ccCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHH
Q 004421 370 LEIP-IV--SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (754)
Q Consensus 370 i~VP-i~--s~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySPF~s~pI~ 415 (754)
+.|. .. .-..+||.|+|+++++. ++...+.++. |.+||.|..+||.
T Consensus 177 fti~~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~ 227 (281)
T 3peh_A 177 FTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIY 227 (281)
T ss_dssp EEEEECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEE
T ss_pred EEEEEcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceE
Confidence 5443 22 23458999999999765 6777888765 9999999999886
No 3
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.84 E-value=5.6e-20 Score=209.53 Aligned_cols=170 Identities=22% Similarity=0.311 Sum_probs=127.1
Q ss_pred eecCH-HHHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCcCEEEEEeCC
Q 004421 237 VRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDG 299 (754)
Q Consensus 237 ~~v~p-~fL~slst~h~~~pf~AIaELIDNS~DAg----------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG 299 (754)
+++.. ..|+.++.+.|+++..+|+|||+||+||+ ++.+.|.|.. +.+...|+|.|||
T Consensus 9 Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~I~I~DnG 82 (559)
T 1y4s_A 9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISDNG 82 (559)
T ss_dssp CCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred eeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEE------eCCCcEEEEEECC
Confidence 66666 46677788888899999999999999998 5555555542 1234799999999
Q ss_pred CCCCHHhHHHhh-hcccCCCC----------CCCCCcccccCceeeeecccccceEEEEEeeCCC-CceeEEEEEecCCC
Q 004421 300 HGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLNQGK 367 (754)
Q Consensus 300 ~GMt~eel~~~l-~fG~S~k~----------~~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~-~svg~ls~sf~~g~ 367 (754)
+||+++++..++ .++.|.+. ..+...||+||+||+|+++ +|++|+|.||+.+. ...++.|.+. +.
T Consensus 83 iGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s~--g~ 159 (559)
T 1y4s_A 83 VGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWESA--GE 159 (559)
T ss_dssp SCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHH-HEEEEEEEEECSSSCGGGEEEEEEC--SS
T ss_pred CCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhh-ccCeEEEEEcCCCCCCCeeEEEEEe--CC
Confidence 999999998876 47766532 1256799999999988666 99999999999874 3567888763 33
Q ss_pred eeEEEeccccCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHH
Q 004421 368 DNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (754)
Q Consensus 368 ~~i~VPi~s~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySPF~s~pI~ 415 (754)
..+.+....-..+||.|+++++++. ++...+.++. |.+||.|..+||.
T Consensus 160 ~~~~i~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~ 209 (559)
T 1y4s_A 160 GEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 209 (559)
T ss_dssp SEEEEEEECCCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEE
T ss_pred CeeEEeECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceE
Confidence 3444432223468999999998654 5666777755 8999999988775
No 4
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.83 E-value=6.6e-21 Score=197.43 Aligned_cols=167 Identities=25% Similarity=0.351 Sum_probs=124.8
Q ss_pred eecCH-HHHHHhhccccCCHHHHHHHHHhcccccCC--------------------------------------------
Q 004421 237 VRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKA-------------------------------------------- 271 (754)
Q Consensus 237 ~~v~p-~fL~slst~h~~~pf~AIaELIDNS~DAgA-------------------------------------------- 271 (754)
++..- +.|..+..+.|++...+|+|||+||.||..
T Consensus 29 Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (272)
T 3ied_A 29 FKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKRIILENNKLIKDAEVVTNEEIKNETEKEKTENVNESTDKKEN 108 (272)
T ss_dssp CCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred hHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHHHhccChhhhhccccccccccccccccccccccccccccccc
Confidence 44443 455666888889999999999999999932
Q ss_pred --------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhh-hcccCCC--------C-CCCCCcccccCcee
Q 004421 272 --------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-YFGHKQP--------D-ADDPNRIGRFGVGF 333 (754)
Q Consensus 272 --------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l-~fG~S~k--------~-~~d~~~IG~fGiGf 333 (754)
..+.|.|.. +.+...|+|.|||+||++++|.+.| .++.|.. . ..+...|||||+||
T Consensus 109 ~~e~~~~~~~l~I~I~~------Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGF 182 (272)
T 3ied_A 109 VEEEKNDIKKLIIKIKP------DKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGF 182 (272)
T ss_dssp -----CGGGGCCEEEEE------ETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGG
T ss_pred cccccCCCCCcEEEEEE------eCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCccccee
Confidence 123455542 2356799999999999999999876 3544421 1 13578999999999
Q ss_pred eeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEeccc--------cCCCCcEEEEEecccc-chhhhhhhhh-h
Q 004421 334 KTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS--------YYRKGQFMELDTVVQS-EATAKYNLKS-I 403 (754)
Q Consensus 334 KsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~g~~~i~VPi~s--------~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I 403 (754)
++|+| +|++|+|+|| .+ ..++.|.+ .+...+.|.... -..+||.|+|+++++. ++..++.++. |
T Consensus 183 ySaFm-VAdkV~V~Sk-~d--d~~~~WeS--~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~li 256 (272)
T 3ied_A 183 YSSFL-VSNRVEVYTK-KE--DQIYRWSS--DLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKELI 256 (272)
T ss_dssp GGGGG-TEEEEEEEEE-SS--SCEEEEEE--CSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHHHH
T ss_pred heeec-cCCEEEEEEc-CC--CceEEEEE--CCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHHHH
Confidence 98765 9999999999 33 35788877 344566553322 3458999999999865 7888888865 9
Q ss_pred hhcCCCchhhHH
Q 004421 404 KEFSPFNKYLIG 415 (754)
Q Consensus 404 ~kySPF~s~pI~ 415 (754)
.+||.|..+||.
T Consensus 257 kkys~fi~~PI~ 268 (272)
T 3ied_A 257 KKYSEFIKFPIE 268 (272)
T ss_dssp HHHCTTCCSCEE
T ss_pred HHHHhCCCCCeE
Confidence 999999998885
No 5
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.82 E-value=3.6e-21 Score=201.77 Aligned_cols=162 Identities=19% Similarity=0.318 Sum_probs=122.6
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHH
Q 004421 242 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (754)
Q Consensus 242 ~fL~slst~h~~~pf~AIaELIDNS~DAgA----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (754)
+.|+.++.+.|+++..||+|||+||+||+| ..+.|.|.. +.+...|+|.|||+||+++
T Consensus 16 ~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~------d~~~~~l~I~DnGiGMt~e 89 (269)
T 1qy5_A 16 RMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTGVGMTRE 89 (269)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE------ETTTTEEEEEECSCCCCHH
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEE------cCCceEEEEEECCCCCCHH
Confidence 456677777888899999999999999976 456666653 2346799999999999999
Q ss_pred hHHHhh-hcccCCCC-------------CCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEE
Q 004421 306 DVVRMT-YFGHKQPD-------------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLE 371 (754)
Q Consensus 306 el~~~l-~fG~S~k~-------------~~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~g~~~i~ 371 (754)
+|.+.| .++.|... ..+...||+||+||++++| +|++|.|+||+.+. .++.|.+ .+ ..+.
T Consensus 90 dl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~-va~~v~V~Sk~~~~--~~~~w~s--~g-g~~~ 163 (269)
T 1qy5_A 90 ELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--DS-NEFS 163 (269)
T ss_dssp HHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CS-SCEE
T ss_pred HHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhh-ccceEEEEEEecCC--cEEEEEE--eC-CEEE
Confidence 998865 46655211 0356789999999998866 99999999999875 4677765 33 4555
Q ss_pred Eeccc---cCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHH
Q 004421 372 IPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (754)
Q Consensus 372 VPi~s---~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySPF~s~pI~ 415 (754)
|.... -..+||.|+|+++.+. ++...+.++. |.+||.|..+||.
T Consensus 164 i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~ 212 (269)
T 1qy5_A 164 VIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 212 (269)
T ss_dssp EEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEE
T ss_pred EEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeE
Confidence 43221 2357999999998754 5666677754 8899999998886
No 6
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.82 E-value=1.1e-20 Score=193.96 Aligned_cols=169 Identities=23% Similarity=0.303 Sum_probs=127.1
Q ss_pred eeecC-HHHHHHhhccccCCHHHHHHHHHhcccccCCC----------------ccEEEEEecccccCCCCcCEEEEEeC
Q 004421 236 FVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSIIDD 298 (754)
Q Consensus 236 ~~~v~-p~fL~slst~h~~~pf~AIaELIDNS~DAgAt----------------~V~I~I~~~~~~~~~~~~~~L~I~DN 298 (754)
.++++ .+.|..++.+.|+++..+|+|||+||+||+++ .+.|.|.. +.+...|+|.||
T Consensus 13 ~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~------d~~~~~i~V~Dn 86 (228)
T 3t0h_A 13 AFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLTIVDT 86 (228)
T ss_dssp ECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE------ETTTTEEEEEEC
T ss_pred EEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEE------eCCeeEEEEEeC
Confidence 45565 35677788888899999999999999999863 46666653 235689999999
Q ss_pred CCCCCHHhHHHhh-hcccCCCC--------CCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCee
Q 004421 299 GHGMTHQDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 369 (754)
Q Consensus 299 G~GMt~eel~~~l-~fG~S~k~--------~~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~g~~~ 369 (754)
|+||+++++..++ .++.|.+. ..+...+|+||+||+|+++ ++++|.|.||+.+. .++.|.+. +...
T Consensus 87 G~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~-vad~v~V~Sr~~~~--~~~~w~~~--g~~~ 161 (228)
T 3t0h_A 87 GIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWESS--AGGS 161 (228)
T ss_dssp SCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CEEEEEEC--STTE
T ss_pred CCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc-cCCEEEEEEecCCC--CcEEEEEc--CCce
Confidence 9999999998765 45554321 1357899999999998865 99999999999863 47777663 3334
Q ss_pred EEEe-cc-ccCCCCcEEEEEecccc-chhhhhhhh-hhhhcCCCchhhHH
Q 004421 370 LEIP-IV-SYYRKGQFMELDTVVQS-EATAKYNLK-SIKEFSPFNKYLIG 415 (754)
Q Consensus 370 i~VP-i~-s~~~~Gt~I~l~~~~~~-e~~~~~~L~-~I~kySPF~s~pI~ 415 (754)
+.+. .. .-..+||+|+++++.+. ++...+.+. +|.+|+.|..+||.
T Consensus 162 ~~v~~~~~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~ 211 (228)
T 3t0h_A 162 FTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 211 (228)
T ss_dssp EEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEE
T ss_pred EEEeecCCCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeE
Confidence 4443 22 23458999999998765 555566664 49999999998885
No 7
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.81 E-value=1.4e-20 Score=193.75 Aligned_cols=167 Identities=19% Similarity=0.314 Sum_probs=119.1
Q ss_pred eecC-HHHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCcCEEEEEeCC
Q 004421 237 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 299 (754)
Q Consensus 237 ~~v~-p~fL~slst~h~~~pf~AIaELIDNS~DAgA----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG 299 (754)
+++. ...++.++.+.|+.+..||+|||+||+||+| ..+.|.|.. +.+...|+|.|||
T Consensus 14 F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~------d~~~~~i~I~DnG 87 (236)
T 2gqp_A 14 FQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTG 87 (236)
T ss_dssp CCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred hhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEE------cCCCCEEEEEECC
Confidence 4554 3456777777888999999999999999986 335555542 1245799999999
Q ss_pred CCCCHHhHHHhh-hcccCCCCC-------------CCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecC
Q 004421 300 HGMTHQDVVRMT-YFGHKQPDA-------------DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ 365 (754)
Q Consensus 300 ~GMt~eel~~~l-~fG~S~k~~-------------~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~ 365 (754)
+||+++++.+.| .+++|.+.. .+...||+||+||+++++ +|++|.|.||+.+. .++.|.+ .
T Consensus 88 ~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~-va~~v~V~Sr~~~~--~~~~w~~--~ 162 (236)
T 2gqp_A 88 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--D 162 (236)
T ss_dssp CCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--S
T ss_pred cCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhh-cCCEEEEEEeCCCC--ceEEEEE--e
Confidence 999999998865 477663211 345789999999987655 99999999999875 3666765 3
Q ss_pred CCeeEEEeccc---cCCCCcEEEEEecccc-chhhhhhhh-hhhhcCCCchhhHH
Q 004421 366 GKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLK-SIKEFSPFNKYLIG 415 (754)
Q Consensus 366 g~~~i~VPi~s---~~~~Gt~I~l~~~~~~-e~~~~~~L~-~I~kySPF~s~pI~ 415 (754)
+ ..+.+.... -..+||+|+++++.+. ++...+.++ +|.+|+.|..+||.
T Consensus 163 g-g~~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~ 216 (236)
T 2gqp_A 163 S-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 216 (236)
T ss_dssp S-SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEE
T ss_pred C-CEEEEEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceE
Confidence 3 345443222 2357999999998754 455556664 59999999998886
No 8
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.81 E-value=1.6e-20 Score=195.40 Aligned_cols=169 Identities=23% Similarity=0.302 Sum_probs=126.7
Q ss_pred eeecCH-HHHHHhhccccCCHHHHHHHHHhcccccCCC----------------ccEEEEEecccccCCCCcCEEEEEeC
Q 004421 236 FVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSIIDD 298 (754)
Q Consensus 236 ~~~v~p-~fL~slst~h~~~pf~AIaELIDNS~DAgAt----------------~V~I~I~~~~~~~~~~~~~~L~I~DN 298 (754)
.++..- +.|..++.+.|++...+|+|||+||+||+++ .+.|.|.. +.+...|+|.||
T Consensus 41 ~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~I~I~Dn 114 (256)
T 3o0i_A 41 AFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLTIVDT 114 (256)
T ss_dssp ECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEEEC
T ss_pred EeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------cCCceEEEEecC
Confidence 355553 5667778888899999999999999999864 46666653 235789999999
Q ss_pred CCCCCHHhHHHhh-hcccCCCC--------CCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCee
Q 004421 299 GHGMTHQDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 369 (754)
Q Consensus 299 G~GMt~eel~~~l-~fG~S~k~--------~~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~g~~~ 369 (754)
|+||+++++..+| .++.|... ..+...||+||+||+|+++ ++++|+|.||+.+. .++.|.+. +...
T Consensus 115 G~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~-Vadkv~V~Sr~~~~--~g~~w~s~--gg~~ 189 (256)
T 3o0i_A 115 GIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWESS--AGGS 189 (256)
T ss_dssp SCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CEEEEEEC--STTE
T ss_pred CCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhc-cCCeEEEEEcCCCC--ceEEEEEe--ccce
Confidence 9999999998765 45554321 1357899999999998866 99999999999863 47777763 3334
Q ss_pred EEEecc--ccCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHH
Q 004421 370 LEIPIV--SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (754)
Q Consensus 370 i~VPi~--s~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySPF~s~pI~ 415 (754)
+.|... .-..+||+|+++++.+. ++...+.++. |.+||.|..+||.
T Consensus 190 ~~v~~~~~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~ 239 (256)
T 3o0i_A 190 FTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 239 (256)
T ss_dssp EEEEECCSSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEE
T ss_pred EEEeeCCCCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeE
Confidence 444321 23357999999998754 5666667654 9999999998886
No 9
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.81 E-value=3.9e-20 Score=193.48 Aligned_cols=163 Identities=23% Similarity=0.304 Sum_probs=123.8
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHH
Q 004421 242 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (754)
Q Consensus 242 ~fL~slst~h~~~pf~AIaELIDNS~DAgA----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (754)
+.+..++...|+++..||+|||+||+||+| +.+.|.|.. +.+...|+|.|||+||+++
T Consensus 56 ~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~------d~~~~~I~I~DnG~GMs~e 129 (264)
T 1yc1_A 56 QLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIP------NKQDRTLTIVDTGIGMTKA 129 (264)
T ss_dssp HHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEE------ETTTTEEEEEECSCCCCHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEE------CCCeeEEEEEECCcCCCHH
Confidence 567777888889999999999999999998 788888763 2346789999999999999
Q ss_pred hHHHhh-hcccCCCC--------CCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEe-cc
Q 004421 306 DVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IV 375 (754)
Q Consensus 306 el~~~l-~fG~S~k~--------~~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~g~~~i~VP-i~ 375 (754)
+|..++ .++.|.+. ..+...||+||+||+++++ +++++.|+||+.+. .++.|..... ..+.+. ..
T Consensus 130 dL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~~--~~~~w~~~~~--~~~~i~~~~ 204 (264)
T 1yc1_A 130 DLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWESSAG--GSFTVRTDT 204 (264)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHH-HEEEEEEEEECTTS--CCEEEEECST--TEEEEEECC
T ss_pred HHHHHHHhhccccchhhhhhhccccchhhcCCCCCCcccccc-CCCEEEEEEecCCC--ceEEEEEcCC--ceEEEeecC
Confidence 998765 57766432 2357799999999998766 99999999999874 3677765432 234442 21
Q ss_pred c-cCCCCcEEEEEecccc-chhhhhhhh-hhhhcCCCchhhHH
Q 004421 376 S-YYRKGQFMELDTVVQS-EATAKYNLK-SIKEFSPFNKYLIG 415 (754)
Q Consensus 376 s-~~~~Gt~I~l~~~~~~-e~~~~~~L~-~I~kySPF~s~pI~ 415 (754)
. -..+||+|+++++.+. ++...+.+. +|.+|+.|..+||.
T Consensus 205 ~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~ 247 (264)
T 1yc1_A 205 GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 247 (264)
T ss_dssp SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEE
T ss_pred CCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEE
Confidence 1 2357999999997654 445555554 59999999998885
No 10
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.80 E-value=7e-20 Score=186.26 Aligned_cols=168 Identities=22% Similarity=0.292 Sum_probs=123.0
Q ss_pred eecC-HHHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCcCEEEEEeCC
Q 004421 237 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 299 (754)
Q Consensus 237 ~~v~-p~fL~slst~h~~~pf~AIaELIDNS~DAgA----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG 299 (754)
++++ ...++.++...|+++..||+|||+||+||+| ..+.|.+.. +.+...|.|.|||
T Consensus 8 f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~------~~~~~~i~I~DnG 81 (220)
T 2wer_A 8 FQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITP------KPEQKVLEIRDSG 81 (220)
T ss_dssp CCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEE------EGGGTEEEEEECS
T ss_pred eeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEE------CCCCCEEEEEEcC
Confidence 4444 3466777877888999999999999999987 455666653 1246789999999
Q ss_pred CCCCHHhHHHhh-hcccCCC--------CCCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeE
Q 004421 300 HGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL 370 (754)
Q Consensus 300 ~GMt~eel~~~l-~fG~S~k--------~~~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~g~~~i 370 (754)
+||+++++...+ .+++|.+ ...+...||+||+||+++ +.+++++.|.|++.+. .++.|.... ...+
T Consensus 82 ~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~-~~~~~~v~v~S~~~~~--~~~~~~~~~--~~~~ 156 (220)
T 2wer_A 82 IGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSNDD--EQYIWESNA--GGSF 156 (220)
T ss_dssp CCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTTS--CCEEEEECS--SSEE
T ss_pred CCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHh-hhcCCeeEEEEecCCC--ceeEEEeCC--CCce
Confidence 999999998765 5776532 123578999999999876 5599999999999874 367776532 2344
Q ss_pred EEeccc---cCCCCcEEEEEecccc-chhhhhhhh-hhhhcCCCchhhHH
Q 004421 371 EIPIVS---YYRKGQFMELDTVVQS-EATAKYNLK-SIKEFSPFNKYLIG 415 (754)
Q Consensus 371 ~VPi~s---~~~~Gt~I~l~~~~~~-e~~~~~~L~-~I~kySPF~s~pI~ 415 (754)
.+.... -..+||+|+++++.+. ++...+.+. +|.+|+.|..+||.
T Consensus 157 ~i~~~~~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~ 206 (220)
T 2wer_A 157 TVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQ 206 (220)
T ss_dssp EEEECSSSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEE
T ss_pred EeecccCCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceE
Confidence 443221 2357999999998654 445555664 48999999988775
No 11
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.7e-19 Score=206.03 Aligned_cols=169 Identities=22% Similarity=0.295 Sum_probs=127.2
Q ss_pred eecC-HHHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCcCEEEEEeCC
Q 004421 237 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 299 (754)
Q Consensus 237 ~~v~-p~fL~slst~h~~~pf~AIaELIDNS~DAgA----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG 299 (754)
++.. .+.|+.++.+.|++...+|+|||+||+||++ ..+.|.|.. +.+...|+|.|||
T Consensus 8 Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~------d~~~~~I~I~DnG 81 (677)
T 2cg9_A 8 FQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITP------KPEQKVLEIRDSG 81 (677)
T ss_dssp CCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEE------EGGGTEEEEEECS
T ss_pred hhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEE------eCCCCEEEEEECC
Confidence 5666 4567777888889999999999999999973 334555542 1235789999999
Q ss_pred CCCCHHhHHHhh-hcccCCC--------CCCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeE
Q 004421 300 HGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL 370 (754)
Q Consensus 300 ~GMt~eel~~~l-~fG~S~k--------~~~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~g~~~i 370 (754)
+||+++++.++| .++.|.+ ...+...||+||+||++|+| ++++|+|+||+.+. .++.|.+. +...+
T Consensus 82 iGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~-vadkV~V~Sk~~~~--~~~~W~s~--g~~~~ 156 (677)
T 2cg9_A 82 IGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDD--EQYIWESN--AGGSF 156 (677)
T ss_dssp CCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGG-TEEEEEEEEECTTS--CEEEEEEC--SSSEE
T ss_pred CCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhh-cCcEEEEEEccCCC--ceEEEEEc--CCceE
Confidence 999999999876 4555532 12357899999999998855 99999999999984 37778763 33344
Q ss_pred EEec-c--ccCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHHH
Q 004421 371 EIPI-V--SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (754)
Q Consensus 371 ~VPi-~--s~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySPF~s~pI~e 416 (754)
.|.. . .-..+||.|+++++.+. ++...+.++. |.+||.|..+||..
T Consensus 157 ti~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l 207 (677)
T 2cg9_A 157 TVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQL 207 (677)
T ss_dssp EEEECCSSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEE
T ss_pred EEeecCCCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEE
Confidence 4432 1 23458999999998754 6666777754 88999999998863
No 12
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.77 E-value=2.9e-19 Score=183.78 Aligned_cols=165 Identities=21% Similarity=0.293 Sum_probs=119.8
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHH
Q 004421 242 SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (754)
Q Consensus 242 ~fL~slst~h~~~pf~AIaELIDNS~DAg----------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (754)
..+..++...++++..||+|||+||+||+ ++.+.|.|.. +.+...|.|.|||+||+++
T Consensus 35 ~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~------~~~~~~i~I~DnG~GMs~e 108 (235)
T 2ior_A 35 QLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISDNGVGMTRD 108 (235)
T ss_dssp HHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEE------ETTTTEEEEEECSSCCCHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEE------cCCceEEEEEECCCCCCHH
Confidence 35566676777889999999999999998 5556666653 1234679999999999999
Q ss_pred hHHHhh-hcccCCCC----------CCCCCcccccCceeeeecccccceEEEEEeeCCCC-ceeEEEEEecCCCeeEEEe
Q 004421 306 DVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSR-SIAFLSQSLNQGKDNLEIP 373 (754)
Q Consensus 306 el~~~l-~fG~S~k~----------~~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~~-svg~ls~sf~~g~~~i~VP 373 (754)
++..++ .+++|.+. ..+...+|+||+||+++ |.++++++|.|++.+.. ..++.|.... ...+.+.
T Consensus 109 dl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~-~~~~~~v~V~Sr~~~~~~~~~~~w~~~~--~~~~~i~ 185 (235)
T 2ior_A 109 EVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSA-FIVADKVTVRTRAAGEKPENGVFWESAG--EGEYTVA 185 (235)
T ss_dssp HHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGG-GGTEEEEEEEEECTTSCGGGEEEEEECS--SSEEEEE
T ss_pred HHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHH-HhCcCeEEEEEecCCCCCceeEEEEecC--CCcEEEe
Confidence 998765 57776431 01357899999999876 66999999999998752 4577776632 2334332
Q ss_pred ccccCCCCcEEEEEecccc-chhhhhhh-hhhhhcCCCchhhHH
Q 004421 374 IVSYYRKGQFMELDTVVQS-EATAKYNL-KSIKEFSPFNKYLIG 415 (754)
Q Consensus 374 i~s~~~~Gt~I~l~~~~~~-e~~~~~~L-~~I~kySPF~s~pI~ 415 (754)
...-...||+|+++++++. ++...+.+ ++|.+|+.|..+||.
T Consensus 186 ~~~~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~ 229 (235)
T 2ior_A 186 DITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 229 (235)
T ss_dssp EECCCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEE
T ss_pred eCCCCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeE
Confidence 2223357999999998654 44445555 459999999887775
No 13
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.75 E-value=3.7e-19 Score=205.02 Aligned_cols=170 Identities=22% Similarity=0.313 Sum_probs=122.2
Q ss_pred eecCH-HHHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCcCEEEEEeCC
Q 004421 237 VRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDG 299 (754)
Q Consensus 237 ~~v~p-~fL~slst~h~~~pf~AIaELIDNS~DAg----------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG 299 (754)
+++.- +.|+.++.+.|+++..+|+|||+||+||+ ++.+.|.|.. +.+...|+|.|||
T Consensus 9 Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~------d~~~~~I~I~DnG 82 (624)
T 2ioq_A 9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISDNG 82 (624)
T ss_dssp ------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred eeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEE------eCCCcEEEEEECC
Confidence 44444 35677777778899999999999999998 6555565543 1235799999999
Q ss_pred CCCCHHhHHHhh-hcccCCCC----------CCCCCcccccCceeeeecccccceEEEEEeeCCC-CceeEEEEEecCCC
Q 004421 300 HGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLNQGK 367 (754)
Q Consensus 300 ~GMt~eel~~~l-~fG~S~k~----------~~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~-~svg~ls~sf~~g~ 367 (754)
+||+++++..++ .++.|.+. ..+...||+||+||+|+++ +|++|+|+||+.+. ...++.|.+...+
T Consensus 83 iGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s~g~~- 160 (624)
T 2ioq_A 83 VGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWESAGEG- 160 (624)
T ss_dssp CCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHH-HEEEEEEEEECTTSCGGGEEEEEECSSS-
T ss_pred CCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHh-cCCeEEEEECCCCCCCCeeEEEEEeCCC-
Confidence 999999998875 46666432 1357799999999998766 99999999999873 3567888764333
Q ss_pred eeEEEeccccCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHH
Q 004421 368 DNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (754)
Q Consensus 368 ~~i~VPi~s~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySPF~s~pI~ 415 (754)
.+.+....-..+||+|+++++++. ++...+.++. |.+||.|..+||.
T Consensus 161 -~~~i~~~~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~ 209 (624)
T 2ioq_A 161 -EYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 209 (624)
T ss_dssp -CCEEEEECCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEE
T ss_pred -eEEEEECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceE
Confidence 333322223468999999998754 5666777755 8999999998875
No 14
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.75 E-value=4.7e-19 Score=205.02 Aligned_cols=162 Identities=20% Similarity=0.323 Sum_probs=109.3
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHH
Q 004421 242 SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (754)
Q Consensus 242 ~fL~slst~h~~~pf~AIaELIDNS~DAg----------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (754)
+.|+.++.+.|+++..+|+|||+||+||+ |..+.|.|.. +.+...|+|.|||+||+++
T Consensus 33 ~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~------d~~~~~I~I~DnGiGMt~e 106 (666)
T 2o1u_A 33 RMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTGVGMTRE 106 (666)
T ss_dssp -CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEE------ETTTTEEEEEECSCCCCHH
T ss_pred HHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEE------eCCCCEEEEEECCCCCCHH
Confidence 34555677778889999999999999997 6556666653 2245799999999999999
Q ss_pred hHHHhh-hcccCCCC--------C-----CCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEE
Q 004421 306 DVVRMT-YFGHKQPD--------A-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLE 371 (754)
Q Consensus 306 el~~~l-~fG~S~k~--------~-----~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~g~~~i~ 371 (754)
++..+| .++.|.+. . .+...||+||+||++++| +|++|+|.||+.+. .++.|.+ .+ ..+.
T Consensus 107 dl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~-vAdkV~V~Sr~~~~--~~~~W~s--~g-g~~t 180 (666)
T 2o1u_A 107 ELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--DS-NEFS 180 (666)
T ss_dssp HHHHHTTC-------------------------------CTTGGGGG-TEEEEEEEEECTTS--CCEEEEE--SS-SCCE
T ss_pred HHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHH-hcCEEEEEEeeCCC--ceEEEEE--eC-CeEE
Confidence 998876 45555221 1 356799999999998855 99999999999875 3677765 33 3444
Q ss_pred Eeccc---cCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHH
Q 004421 372 IPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (754)
Q Consensus 372 VPi~s---~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySPF~s~pI~ 415 (754)
|.... -..+||+|+++++++. ++...+.++. |.+||.|..+||.
T Consensus 181 i~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~ 229 (666)
T 2o1u_A 181 VIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 229 (666)
T ss_dssp EEECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEE
T ss_pred EEecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceE
Confidence 43221 2357999999998754 5666777754 8999999998875
No 15
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.66 E-value=3.7e-17 Score=138.29 Aligned_cols=55 Identities=33% Similarity=0.659 Sum_probs=49.2
Q ss_pred cCCCCCCCceeeCc--cchhhccCCCCCCCCCCCCCceecCCCC--CCCCCCCcccccC
Q 004421 637 GALYKPDQEWVQCN--KCRKWRMLDPGFDTKSLPVEWFCYMKPF--EGLCDLPEQKVDA 691 (754)
Q Consensus 637 ~~~~~~~~~WvQCd--~C~KWR~Lp~~~~~~~lp~~W~C~mnp~--~~sC~~pEe~~~~ 691 (754)
+.......+||||| +|+|||+||.++++..+|++|+|+||++ +++|++|||.++.
T Consensus 9 ~~~~~~~~~WVQCd~p~C~KWR~LP~~~~~~~lpd~W~C~mN~d~~~~~Cs~pEE~~~~ 67 (69)
T 2e61_A 9 ISGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEETWTG 67 (69)
T ss_dssp SSSCCCCCCEEECSSTTTCCEEECCSSCCTTTSCTTCCGGGCSCGGGCSSSSCCCCCCC
T ss_pred CCCCCCCCeEEEeCccccCcccCCccccccccCCCcCEeCCCCCCccCCCCCCcccCCC
Confidence 44456688999999 9999999999999888999999999996 5999999998874
No 16
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.60 E-value=3.3e-14 Score=152.92 Aligned_cols=110 Identities=20% Similarity=0.240 Sum_probs=87.5
Q ss_pred ceeeecCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh
Q 004421 234 KNFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 312 (754)
Q Consensus 234 ~~~~~v~p~fL~sl-st~h~~~pf~AIaELIDNS~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~ 312 (754)
|.+..+++...+.+ +...+..+..||+|||+||+||+|+.|.|.+.. .+...|+|.|||.||+++++..++.
T Consensus 3 m~I~~L~~~~~~~I~agevi~~~~~~v~ELi~NaidA~a~~I~I~i~~-------~~~~~i~V~DnG~Gi~~~~l~~~~~ 75 (333)
T 1b63_A 3 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIER-------GGAKLIRIRDNGCGIKKDELALALA 75 (333)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGHHHHHS
T ss_pred CcceECCHHHHHHHhcCCchhCHHHHHHHHHHHHHHCCCCeEEEEEEe-------CCceEEEEEEcCCCcCHHHHHHhhh
Confidence 44678999999999 445567999999999999999999999998873 2346899999999999999999874
Q ss_pred -cccCCCCCC-----CCCcccccCceeeeecccccceEEEEEeeCCC
Q 004421 313 -FGHKQPDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADS 353 (754)
Q Consensus 313 -fG~S~k~~~-----d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~ 353 (754)
|+.+ |... ....+|.+|+|+.+. ..++ +++|.||+.+.
T Consensus 76 ~~~ts-K~~~~~d~~~~~~~G~~G~gl~si-~~vs-~l~v~s~~~~~ 119 (333)
T 1b63_A 76 RHATS-KIASLDDLEAIISLGFRGEALASI-SSVS-RLTLTSRTAEQ 119 (333)
T ss_dssp TTCCS-SCCSHHHHHTCCSSCCSSCHHHHH-HTTS-EEEEEEECTTC
T ss_pred ccccc-CccccchhhhccccCccccchhhh-hcCC-cEEEEEecCCC
Confidence 5554 3211 235789999999554 3366 79999999875
No 17
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=99.58 E-value=1.4e-16 Score=143.37 Aligned_cols=59 Identities=19% Similarity=0.530 Sum_probs=50.2
Q ss_pred cCCCCCCCceeeCccchhhccCCCCCC-CCCCCCCceecCCCC--CCCCCCCcccccCCcee
Q 004421 637 GALYKPDQEWVQCNKCRKWRMLDPGFD-TKSLPVEWFCYMKPF--EGLCDLPEQKVDAGVVT 695 (754)
Q Consensus 637 ~~~~~~~~~WvQCd~C~KWR~Lp~~~~-~~~lp~~W~C~mnp~--~~sC~~pEe~~~~~~~~ 695 (754)
+..+.+..+|||||+|+|||+||.++. ...+|++|+|+||++ +++|++|||.+++++-.
T Consensus 19 ~~~~~~~~~WVQCD~C~KWRrLP~~~~~~~~~pd~W~C~mN~D~~~nsCs~PEE~~~~ei~~ 80 (100)
T 2l7p_A 19 EDSYSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNSDKRFADCSKSQEMSNEEINE 80 (100)
T ss_dssp SSCCSSSSEEEECTTTCCEEEECHHHHTTSTTSSCCCGGGSSCSSSCSTTSCCSSCHHHHHH
T ss_pred CCCCCCCCeEEeeCCCCccccCChhHccccCCCCCceeCCCCCCCCCCCCCccCCCHHHHHH
Confidence 444667899999999999999998765 356899999999996 59999999999877544
No 18
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.32 E-value=1.4e-12 Score=142.13 Aligned_cols=139 Identities=18% Similarity=0.159 Sum_probs=92.0
Q ss_pred eeecCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcc
Q 004421 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFG 314 (754)
Q Consensus 236 ~~~v~p~fL~sl-st~h~~~pf~AIaELIDNS~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG 314 (754)
+..+++..++.+ +...+..|..+|.|||+||+||+|+.|.|.+. ..+...|+|.|||.||+++++..++.-.
T Consensus 6 I~~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~~I~I~i~-------~~~~~~i~V~DnG~Gi~~~~l~~~~~~~ 78 (367)
T 3h4l_A 6 IHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFK-------DYGLESIECSDNGDGIDPSNYEFLALKH 78 (367)
T ss_dssp -------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEE-------TTTTSEEEEEECSCCCCGGGTTTTTCCE
T ss_pred ceeCCHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCCCEEEEEEE-------eCCEEEEEEEECCCCcChhHhccceecc
Confidence 567889999999 44566799999999999999999999999886 3456799999999999999998876533
Q ss_pred cCCCC--CCC---CCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEeccccCCCCcEEEEE
Q 004421 315 HKQPD--ADD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 387 (754)
Q Consensus 315 ~S~k~--~~d---~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~g~~~i~VPi~s~~~~Gt~I~l~ 387 (754)
.+.|. .++ ....|..|.|+.+. ..++ +++|.||+.+ ..++.+..-..|. +..+.+.-...||+|++.
T Consensus 79 ~tsK~~~~~Dl~~i~t~GfrGeaL~Si-~avS-~l~V~sr~~~--~~~~~~~~~~~G~--~~~~~~~~~~~GTtV~v~ 150 (367)
T 3h4l_A 79 YTSKIAKFQDVAKVQTLGFRGEALSSL-CGIA-KLSVITTTSP--PKADKLEYDMVGH--ITSKTTTSRNKGTTVLVS 150 (367)
T ss_dssp EC---------CCCCEEEETTHHHHHH-HHSS-EEEEEEESST--TCEEEEEECTTCC--EEEEEEECCSSEEEEEEE
T ss_pred ccCcCCchhhhhhhhccCccchHHHHh-hccC-EEEEEEEECC--CCEEEEEEcCCCc--EEeeccccCCCCeEEEEc
Confidence 33232 122 34567888998544 4477 6999999987 3454443311332 222222234579999874
No 19
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.27 E-value=7.6e-12 Score=136.36 Aligned_cols=139 Identities=18% Similarity=0.258 Sum_probs=85.8
Q ss_pred eeecCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-c
Q 004421 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 313 (754)
Q Consensus 236 ~~~v~p~fL~sl-st~h~~~pf~AIaELIDNS~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-f 313 (754)
+..+++...+.+ +...+..+..+|+|||+||+||+|+.|.|.+.. .+...|+|.|||.||+++++..++. |
T Consensus 15 I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~~I~I~i~~-------~~~~~I~V~DnG~Gi~~~~l~~~f~~~ 87 (365)
T 1h7s_A 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKD-------YGVDLIEVSDNGCGVEEENFEGLTLKH 87 (365)
T ss_dssp --------------CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGSGGGGC--
T ss_pred hccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCCEEEEEEEe-------CCcEEEEEEECCCCcCHHHHHHHhhhc
Confidence 577888999888 445567999999999999999999999998862 2356899999999999999998764 5
Q ss_pred ccCCCCC-CC---CCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEec-CCCeeEEEeccccCCCCcEEEEE
Q 004421 314 GHKQPDA-DD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLN-QGKDNLEIPIVSYYRKGQFMELD 387 (754)
Q Consensus 314 G~S~k~~-~d---~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~-~g~~~i~VPi~s~~~~Gt~I~l~ 387 (754)
.++.... .+ ....|.+|+|+.+.+ .++ +++|.||+.+.. .++.+. |. .|. +..+.+.-..+||+|++.
T Consensus 88 ~tsK~~~~~dl~~i~s~G~rG~gl~si~-~vs-~v~v~t~~~~~~-~~~~~~-~~~~G~--~~~~~~~~~~~GT~V~v~ 160 (365)
T 1h7s_A 88 HTSKIQEFADLTQVETFGFRGEALSSLC-ALS-DVTISTCHASAK-VGTRLM-FDHNGK--IIQKTPYPRPRGTTVSVQ 160 (365)
T ss_dssp --------CCTTCSEEESSSSSHHHHHH-HHS-EEEEEEECTTCS-SCEEEE-ECTTSC--EEEEEECCCCSEEEEEEE
T ss_pred cccccccccchhcccccCCCCchhhhhh-hhc-cEEEEEccCCCc-ceEEEE-EcCCCc--eEeecccCCCCCcEEEEe
Confidence 4442211 12 245788999985543 477 999999998753 344332 32 232 222222234579999885
No 20
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=133.93 Aligned_cols=139 Identities=21% Similarity=0.304 Sum_probs=96.4
Q ss_pred eeecCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcc
Q 004421 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFG 314 (754)
Q Consensus 236 ~~~v~p~fL~sl-st~h~~~pf~AIaELIDNS~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG 314 (754)
+..+++..++.+ +...+..|..+|.|||+||+||+|+.|.|.++. .+...|+|.|||.||+++++..++...
T Consensus 9 I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~~-------~~~~~I~V~DnG~GI~~~~l~~~~~~~ 81 (348)
T 3na3_A 9 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKE-------GGLKLIQIQDNGTGIRKEDLDIVCERF 81 (348)
T ss_dssp CCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGGGTTTSTT
T ss_pred cccCCHHHHHhhcccCcccCHHHHHHHHHHHHHHcCCCEEEEEEEe-------CCEEEEEEEECCcCcChHHhhhhhccc
Confidence 578999999999 445667999999999999999999999999862 245679999999999999998887543
Q ss_pred cCCCCC--CC---CCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEec-cccCCCCcEEEEE
Q 004421 315 HKQPDA--DD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSYYRKGQFMELD 387 (754)
Q Consensus 315 ~S~k~~--~d---~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~g~~~i~VPi-~s~~~~Gt~I~l~ 387 (754)
.+.|.. ++ ....|.+|.|+.+. ..++ +++|.||+.+.. .++.+ .|..|. +..+. +.-...||+|++.
T Consensus 82 ~tsK~~~~~dl~~i~s~GfrGeaL~Si-~avs-~l~v~sr~~~~~-~~~~~-~~~~G~--~~~~~~~~~~~~GTtV~v~ 154 (348)
T 3na3_A 82 TTSKLQSFEDLASISTYGFRGEALASI-SHVA-HVTITTKTADGK-CAYRA-SYSDGK--LKAPPKPCAGNQGTQITVE 154 (348)
T ss_dssp CCSSCCCC---------CCTTCHHHHH-HHSS-EEEEEEECTTCS-SEEEE-EEETTE--ESSCCEEECCCSEEEEEEE
T ss_pred cccccCcchhhhccccCCcCChHHHHh-hccc-EEEEEEEECCCC-ceEEE-EEeCCE--EeeeeeEecCCCCcEEEEC
Confidence 333321 12 35679999999544 3466 799999998853 33333 233332 11011 1124579999874
No 21
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.00 E-value=4.4e-09 Score=115.67 Aligned_cols=89 Identities=19% Similarity=0.183 Sum_probs=66.2
Q ss_pred CHHHHHHHHHhccccc---C-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhH--------HHhhh-cccCCCCC
Q 004421 254 WIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDA 320 (754)
Q Consensus 254 ~pf~AIaELIDNS~DA---g-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel--------~~~l~-fG~S~k~~ 320 (754)
-+...+.||||||+|| | |+.|+|.|+. ...|+|.|||.||+.++. .-+|. +..+.|-.
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~ 104 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---------DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 104 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEECT---------TSCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSS
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEEeC---------CCEEEEEECCCCcccCcccccCcchHHHhheeccccCCcC
Confidence 5789999999999999 5 9999999862 138999999999999883 33443 32222211
Q ss_pred --CCCCcccccCceeeeecccccceEEEEEeeCC
Q 004421 321 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQTAD 352 (754)
Q Consensus 321 --~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g 352 (754)
.-..+.|..|+|+.+. -.++..++|.|+.++
T Consensus 105 ~~~~~vSgGl~GvGls~v-nalS~~l~v~~~r~g 137 (391)
T 1ei1_A 105 DNSYKVSGGLHGVGVSVV-NALSQKLELVIQREG 137 (391)
T ss_dssp SSSCSSCSCCSSCHHHHH-HHTEEEEEEEEEETT
T ss_pred CCcccccCCccccchHHH-HHhcCeEEEEEEeCC
Confidence 1235779999999544 448889999998766
No 22
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.85 E-value=6.5e-09 Score=104.57 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=71.0
Q ss_pred HHHHHHHHHhccccc---C-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhH--------HHhhh-cccCCCCCC
Q 004421 255 IFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDAD 321 (754)
Q Consensus 255 pf~AIaELIDNS~DA---g-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel--------~~~l~-fG~S~k~~~ 321 (754)
+..++.|||+||+|| | |+.|+|.+.. ...|+|.|||.||+.+++ ..++. ...+.|-..
T Consensus 18 ~~~~v~Elv~NsiDa~~~g~a~~I~V~i~~---------~g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~ 88 (201)
T 3fv5_A 18 PNHLGQEVIDNSVDEALAGHAKRVDVILHA---------DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN 88 (201)
T ss_dssp THHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC--------
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEEEeC---------CCEEEEEECCCCcCcccccccCcchhheeeeeeccccCcCC
Confidence 478999999999999 5 9999998862 238999999999999884 23232 222222111
Q ss_pred --CCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEec-ccc--CCCCcEEEEEe
Q 004421 322 --DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSY--YRKGQFMELDT 388 (754)
Q Consensus 322 --d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~g~~~i~VPi-~s~--~~~Gt~I~l~~ 388 (754)
-....|..|.|+.+. -.+++.+.|.|++++. .+.+.|..|.-...++. ..- ...||+|++.+
T Consensus 89 ~~~~~s~GfrGeglssi-nalS~~l~v~t~~~g~----~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~P 155 (201)
T 3fv5_A 89 KNYQFSGGLHGVGISVV-NALSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWP 155 (201)
T ss_dssp -------------CHHH-HHTEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEE
T ss_pred CcccccCcccceecchh-hcccceEEEEEEecCc----eEEEEEeCCEEcccceecccCCCCCCCeEEEEEE
Confidence 134689999999544 4488899999998764 25566655532222221 122 45799998854
No 23
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.83 E-value=2.1e-07 Score=102.27 Aligned_cols=287 Identities=15% Similarity=0.069 Sum_probs=154.8
Q ss_pred HHHHHHHHhccccc---C-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHh--------HHHhhh-cccCCCC--C
Q 004421 256 FGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPD--A 320 (754)
Q Consensus 256 f~AIaELIDNS~DA---g-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------l~~~l~-fG~S~k~--~ 320 (754)
...+.|||+||+|| | |+.|+|.|+. . ..|+|.|||.||+.++ +..+|. +-.+.|- .
T Consensus 33 ~~lv~ElvdNsiD~a~~g~a~~I~V~i~~-------~--g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~ 103 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALAGHAKRVDVILHA-------D--QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNK 103 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECT-------T--SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEec-------C--CEEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCC
Confidence 67999999999999 4 9999999862 1 3899999999999988 455453 2222221 1
Q ss_pred CCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEE-eccccC--CCCcEEEEEeccccchhhh
Q 004421 321 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEI-PIVSYY--RKGQFMELDTVVQSEATAK 397 (754)
Q Consensus 321 ~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~g~~~i~V-Pi~s~~--~~Gt~I~l~~~~~~e~~~~ 397 (754)
.-..+.|..|+|+.+. -.|+..+.|.|+.++. .+.+.|..|.-.-.+ ++.... ..||+|++.+..+. +
T Consensus 104 ~~~~sgGl~GvGls~v-nalS~~l~v~~~r~g~----~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~Pd~~~-F--- 174 (390)
T 1s16_A 104 NYQFSGGLHGVGISVV-NALSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETF-F--- 174 (390)
T ss_dssp SCSSCSCCSSCHHHHH-HHTEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEECGGG-S---
T ss_pred cccccCCccccchHHH-HHhhcccEEEEEECCc----EEEEEEeCCcccccceecccccCCCCceEEEEEECccc-c---
Confidence 1234778999999544 4588899999997662 345666554211111 122233 46887776532211 1
Q ss_pred hhhhhhhhcCCCchhhHHHhhhcccCCCCCcEEEEEeccCCCCceeeeccCCCCCCCCCCcCcceeecccccCCCCcccc
Q 004421 398 YNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQ 477 (754)
Q Consensus 398 ~~L~~I~kySPF~s~pI~el~~~~~~~~~GT~III~NL~r~~~~~ELdF~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~ 477 (754)
+-..|...-|.+.+..+.-...|..|.+.+-+. +.+..|.
T Consensus 175 -------~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~---~~~~~f~------------------------------ 214 (390)
T 1s16_A 175 -------DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEIN---NTEQRWC------------------------------ 214 (390)
T ss_dssp -------SCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTT---TEEEEEC------------------------------
T ss_pred -------CcccccHHHHHHHHHHHHhcCCCcEEEEEeCCC---ceeEEEE------------------------------
Confidence 001111112222222222123566666654431 0000111
Q ss_pred cCcchhhHHHHHhhhhcCCCeEEEEcCeeecccccccccCceeeecccccceEEEEEEcccccccccccceEEEEEeCee
Q 004421 478 KVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRL 557 (754)
Q Consensus 478 ~~p~~ySLRaYLSiLYL~Prm~I~LnG~kV~~~~i~~~L~~~~v~~~~~~~k~V~It~Gf~k~e~~~~~~Gi~VY~nnRL 557 (754)
+.-.|++|+..|+=... .+....+ .+..+..+..|++.+..... .....++.|.|||-
T Consensus 215 ---~~gGl~~~v~~l~~~~~--------~~~~~~i--------~~~~~~~~~~ve~a~~~~~~---~~~~~~~sFvN~i~ 272 (390)
T 1s16_A 215 ---YQDGLNDYLAEAVNGLP--------TLPEKPF--------IGNFAGDTEAVDWALLWLPE---GGELLTESYVNLIP 272 (390)
T ss_dssp ---CSSCHHHHHHHHHTTSC--------CEEEEEE--------EEEEECSSEEEEEEEEECTT---CCCCCEEEEETTEE
T ss_pred ---cCCcHHHHHHHHhCCCc--------ccCCCcE--------EEEEeeCCEEEEEEEEeccC---CCCceEEEEECCEe
Confidence 11146777776542110 0000000 01111112345555554211 12346889999998
Q ss_pred eeee-eec------------------c-----ccccCCCCCceEEEEEecCcccccCCCceecccCccCccCchHHHHHH
Q 004421 558 IEAY-KRV------------------G-----GMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLE 613 (754)
Q Consensus 558 Ik~~-~kV------------------g-----~q~~~~~~grGVIGVve~~~l~~p~~~~~~pthnKQdFe~t~~y~~L~ 613 (754)
+.-+ -.+ + ..+.+..--.|+..||.+. +++| .|+ ..+|.---.........
T Consensus 273 t~~GGTH~~gfr~alt~~i~~~~~~~~~~k~~~~l~~~dvregl~avisvk--i~~P--~Fe-gQTK~kL~~~e~~~~v~ 347 (390)
T 1s16_A 273 TMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVK--MQDP--QFA-GQTKERLSSRQCAAFVS 347 (390)
T ss_dssp CTTCBHHHHHHHHHHHHHHHHHHHHTTCSCTTCCCCHHHHHTTEEEEEEEE--ESSC--CBS-STTCCCBCCTHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhCcCccCCccCHHHHhhccEEEEEee--cCCC--Ccc-ccccchhcChhHHHHHH
Confidence 8642 000 0 0011111124888888773 3332 343 57777777777778888
Q ss_pred HHHHHHHHHHHhhc
Q 004421 614 EWLGKVADEYWDNK 627 (754)
Q Consensus 614 ~~L~e~l~eYW~~~ 627 (754)
..+.+.+..|..+|
T Consensus 348 ~~v~~~l~~~l~~n 361 (390)
T 1s16_A 348 GVVKDAFILWLNQN 361 (390)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHC
Confidence 89999999998764
No 24
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.82 E-value=1.2e-07 Score=103.69 Aligned_cols=288 Identities=10% Similarity=0.064 Sum_probs=147.3
Q ss_pred CHHHHHHHHHhccccc----CCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCccccc
Q 004421 254 WIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 329 (754)
Q Consensus 254 ~pf~AIaELIDNS~DA----gAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~d~~~IG~f 329 (754)
-|..++.||||||+|| +|+.|+|.|.. + ..|+|.|||.||+. |+.-.+--|.+..........+.-
T Consensus 30 gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~-------~--g~I~V~DnGrGIp~-e~v~~lhagsKf~~~~~~~~y~vs 99 (369)
T 3cwv_A 30 GLHHLVYFLLDVAYEEARRGECRDVVLEVGG-------D--GSIALFCTSRTVTA-ENLVRVATGAGFLGRPPGDGWGWD 99 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEEEECT-------T--SCEEEEEEESSCCH-HHHHHHHTTTTGGGSSCCCSTTTT
T ss_pred hHHHHHHHHHhhhHhHHhhCCCCEEEEEEeC-------C--CEEEEEECCCCcCH-hHeeeeecCCCcCCCccccccccc
Confidence 4788999999999998 79999999862 2 38999999999999 433222222221110000222223
Q ss_pred CceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCee----EEEe---ccccCCCCcEEEEEeccccchhhhhhhhh
Q 004421 330 GVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN----LEIP---IVSYYRKGQFMELDTVVQSEATAKYNLKS 402 (754)
Q Consensus 330 GiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~g~~~----i~VP---i~s~~~~Gt~I~l~~~~~~e~~~~~~L~~ 402 (754)
| |. ++.-.++..++|.|+..+. .+.+.|..|.-. -.-| +......||+|++.+..+. +
T Consensus 100 G-Gl-s~vnalSs~l~v~t~r~g~----~~~~~~~~G~~~~~~~~~~~l~~~g~~~~~GT~V~f~Pd~~~-F-------- 164 (369)
T 3cwv_A 100 S-ML-VVSLALSSRYQVDIWADGR----QWRVMGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFVPDATI-F-------- 164 (369)
T ss_dssp S-SH-HHHHHTEEEEEEEEEETTE----EEEEEEETTEECTTCEEESSCCCCSSCCSEEEEEEEEECTTT-C--------
T ss_pred C-HH-HHHHHhhceEEEEEEECCC----EEEEEEeCCcccccccccCCceEecccCCCCCEEEEEECHHH-h--------
Confidence 5 76 3334578899999998764 244555443210 0111 1112345777766532210 1
Q ss_pred hhhcCCCchhhHHHhhhcccCCCCCcEEEEEeccCCCCceeeeccCCCCCCCCCCcCcceeecccccCCCCcccccCcch
Q 004421 403 IKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLD 482 (754)
Q Consensus 403 I~kySPF~s~pI~el~~~~~~~~~GT~III~NL~r~~~~~ELdF~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~p~~ 482 (754)
+-.-|....|.+.+..+.-...|..|.+.+-+. +.+-.|. +.
T Consensus 165 --~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~---~~~~~f~---------------------------------~~ 206 (369)
T 3cwv_A 165 --EVLAFDRARLSRRCNELAALAPGLRVSFADLQR---GERTLWH---------------------------------LP 206 (369)
T ss_dssp --SCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTT---TEEEEEE---------------------------------CT
T ss_pred --CCccccHHHHHHHHHHHcCcCCCcEEEEEeCCC---CeeEEEE---------------------------------eC
Confidence 000111112222222222123466665554321 0000010 11
Q ss_pred hhHHHHHhhhhcCCCeEEEEcCeeecccccccccCceeeecccccceEEEEEEcccccccccccceEEEEEeCeeeeee-
Q 004421 483 YSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAY- 561 (754)
Q Consensus 483 ySLRaYLSiLYL~Prm~I~LnG~kV~~~~i~~~L~~~~v~~~~~~~k~V~It~Gf~k~e~~~~~~Gi~VY~nnRLIk~~- 561 (754)
-.|++|+..|+=... .+....+ .+..+-.+..|.+.++.+. .....++.|.|||-+.-+
T Consensus 207 gGl~~~v~~l~~~~~--------~~~~~~i--------~~~~~~~~i~ve~a~~~~~----~~~~~~~sFVN~i~t~~GG 266 (369)
T 3cwv_A 207 GGVAQWAHVLTEARP--------QLHPEPV--------VFDFTWDGLRVQCALQWCE----DEDSTLLSFANAVRTVRHG 266 (369)
T ss_dssp THHHHHHHHHHTTSC--------BSSSSCE--------EEEEEETTEEEEEEEEEBS----SSCCEEEEEETTEECTTCB
T ss_pred chHHHHHHHHhcCCc--------ccCCCcE--------EEEEecCCEEEEEEEEecC----CCCeeEEEEECCEEeCCCC
Confidence 146777775542100 0100000 0111111234555555542 224568899999999752
Q ss_pred ------------------eeccccccCCCCCceEEEEEecCcccccCCCceecccCccCccCchHHHHHHHHHHHHHHHH
Q 004421 562 ------------------KRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEY 623 (754)
Q Consensus 562 ------------------~kVg~q~~~~~~grGVIGVve~~~l~~p~~~~~~pthnKQdFe~t~~y~~L~~~L~e~l~eY 623 (754)
.+-...+.+..--.|+..||.+. ++.|...|+ ..+|.-.-........+..+.+.+..|
T Consensus 267 TH~~g~~~al~~a~~~~~k~~~~~l~~~dvregl~avisvk--~~~P~~~Fe-gQTK~kL~~~e~~~~v~~~v~~~l~~~ 343 (369)
T 3cwv_A 267 AHVKGVTQALRGALAKLSGETRGAFPWARVAQGLTAIVAVS--GPRRQMAFA-GPTKELLAIPGLEEAIRKQLQPLFIEL 343 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGSCHHHHTTTEEEEEEEE--CCGGGCCBS-STTCCSBCCTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhcCCCcCHHHHhhccEEEEEec--cCCcchhcc-ccccchhcCHHHHHHHHHHHHHHHHHH
Confidence 00011111222235888888773 332211143 577777777778888899999999999
Q ss_pred Hhhc
Q 004421 624 WDNK 627 (754)
Q Consensus 624 W~~~ 627 (754)
..+|
T Consensus 344 l~~n 347 (369)
T 3cwv_A 344 LREH 347 (369)
T ss_dssp HHTC
T ss_pred HHHC
Confidence 8764
No 25
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.74 E-value=6.3e-07 Score=98.49 Aligned_cols=89 Identities=18% Similarity=0.149 Sum_probs=64.9
Q ss_pred CHHHHHHHHHhcccccC----CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHH--------hhh-cccCCCC-
Q 004421 254 WIFGAIAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPD- 319 (754)
Q Consensus 254 ~pf~AIaELIDNS~DAg----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~--------~l~-fG~S~k~- 319 (754)
-+...|.|||+||+|+. ++.|.|.+.. ...|+|.|||.||+.+++.+ +|. |-...+-
T Consensus 32 g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~---------~~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~ 102 (390)
T 1kij_A 32 GYHHLFKEILDNAVDEALAGYATEILVRLNE---------DGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFE 102 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEEEEEECT---------TSCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGG
T ss_pred hHHHHHHHHHHHHHHHhhhCCCCEEEEEEEc---------CCEEEEEEcCCCCCHHHhhhccccchhhheeeeeeccccc
Confidence 35789999999999995 8889888862 14899999999999998755 443 2121111
Q ss_pred -CCCCCcccccCceeeeecccccceEEEEEeeCC
Q 004421 320 -ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTAD 352 (754)
Q Consensus 320 -~~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g 352 (754)
.......|..|+|++.+ -.++..+.|.|+..+
T Consensus 103 ~~~~~~s~G~~G~Gls~v-~als~~~~v~t~~~g 135 (390)
T 1kij_A 103 QGAYKVSGGLHGVGASVV-NALSEWTVVEVFREG 135 (390)
T ss_dssp GSSCCCCSCSSTTSHHHH-HHTEEEEEEEEEETT
T ss_pred CccccccCCCCCcceeee-cccccceEEEEecCC
Confidence 11123568999999544 458889999999766
No 26
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.56 E-value=1.4e-07 Score=103.92 Aligned_cols=89 Identities=18% Similarity=0.236 Sum_probs=64.6
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHh--------HHHhhh-cccCCCC
Q 004421 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPD 319 (754)
Q Consensus 254 ~pf~AIaELIDNS~DAg-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------l~~~l~-fG~S~k~ 319 (754)
-+...+.||||||+||+ |+.|+|.|+. +...|+|.|||.||+.++ +.-+|. +..+.|-
T Consensus 52 GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~--------~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf 123 (400)
T 1zxm_A 52 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDP--------ENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNY 123 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCC
T ss_pred hHHHHHHHHHhhHHhHHhhcCCCceEEEEEEC--------CCCEEEEEECCCcccCccccccCccchhheeeeecccCCC
Confidence 46789999999999997 8999999872 126999999999999887 333443 2122221
Q ss_pred C--CCCCcccccCceeeeecccccceEEEEEeeC
Q 004421 320 A--DDPNRIGRFGVGFKTGAMRLGKDALVLTQTA 351 (754)
Q Consensus 320 ~--~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~ 351 (754)
. .-..+.|..|+|.++ .-.|+..+.|.++..
T Consensus 124 ~~~~ykvSgGlhGvGlsv-VnAlS~~l~v~v~~~ 156 (400)
T 1zxm_A 124 DDDEKKVTGGRNGYGAKL-CNIFSTKFTVETASR 156 (400)
T ss_dssp CGGGCCCCSCCSSCHHHH-HHHTEEEEEEEEEET
T ss_pred CCCcccccCCccccceee-eEEeccceEEEEecC
Confidence 1 123478999999954 445888999998774
No 27
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.54 E-value=1.4e-07 Score=96.22 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=91.2
Q ss_pred CHHHHHHHHHhccccc----CCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhH--------HHhhh-cccCCCC-
Q 004421 254 WIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPD- 319 (754)
Q Consensus 254 ~pf~AIaELIDNS~DA----gAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel--------~~~l~-fG~S~k~- 319 (754)
-+...+.|||+||+|+ +|+.|+|.|+. ...|+|.|||.||+.+.. .-+|. +-.+.|-
T Consensus 35 gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~---------~g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd 105 (220)
T 4duh_A 35 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---------DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 105 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCEEEEEECT---------TSCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCC
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEEeC---------CCcEEEEECCcCcccccccccCcchhhheeeecccCCCcC
Confidence 4788999999999999 89999999862 247999999999999863 22232 2112221
Q ss_pred -CCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCe--eEEEeccccCCCCcEEEEEeccccchhh
Q 004421 320 -ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NLEIPIVSYYRKGQFMELDTVVQSEATA 396 (754)
Q Consensus 320 -~~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~g~~--~i~VPi~s~~~~Gt~I~l~~~~~~e~~~ 396 (754)
..-..+.|..|+|.++ .-.|+..+.|.++.++. .+.+.|..|.- .+. ++..-...||+|+..+..+. +.
T Consensus 106 ~~~yk~SgGlhGvG~sv-vNAlS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~-~~g~~~~~GT~V~F~Pd~~~-F~- 177 (220)
T 4duh_A 106 DNSYKVSGGLHGVGVSV-VNALSQKLELVIQREGK----IHRQIYEHGVPQAPLA-VTGETEKTGTMVRFWPSLET-FT- 177 (220)
T ss_dssp TTC--------CCCHHH-HHHTEEEEEEEEEETTE----EEEEEEETTEESSSCE-EEEECSCCEEEEEEEECTTT-CC-
T ss_pred CCccccccCccceecch-hcccccceEEEEEECCE----EEEEEecCCcCcCCce-eccccCCCCcEEEEEECHHH-hC-
Confidence 1124678999999954 44588999999998774 24566654421 111 11122467999987643221 10
Q ss_pred hhhhhhhhhcCCCchhhHHHhhhcccCCCCCcEEEEEeccC
Q 004421 397 KYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 437 (754)
Q Consensus 397 ~~~L~~I~kySPF~s~pI~el~~~~~~~~~GT~III~NL~r 437 (754)
+..-|...-|.+.+..++--..|.+|.+.+-+.
T Consensus 178 --------~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~ 210 (220)
T 4duh_A 178 --------NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 210 (220)
T ss_dssp --------SSCSCCHHHHHHHHHHHHHHCTTSEEEEEETTT
T ss_pred --------CcccCCHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 000122222232222222225788998887653
No 28
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.48 E-value=3.3e-07 Score=93.87 Aligned_cols=177 Identities=17% Similarity=0.146 Sum_probs=99.6
Q ss_pred ceeeecCHHHHHHhhccccCCHHHHHHHHHhccccc----CCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHh---
Q 004421 234 KNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--- 306 (754)
Q Consensus 234 ~~~~~v~p~fL~slst~h~~~pf~AIaELIDNS~DA----gAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--- 306 (754)
..+++..|...- ++....-+...+.|||+||+|+ .++.|+|.|+. ...++|.|||.||+.++
T Consensus 22 le~vr~RPgmYi--Gs~~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~---------~g~i~V~DnG~GIp~~~h~~ 90 (226)
T 4emv_A 22 LDAVRKRPGMYI--GSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINK---------DGSLTVQDHGRGMPTGMHAM 90 (226)
T ss_dssp THHHHHCHHHHH--SCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBCGG
T ss_pred hHHHhhCCceEE--cCCCcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeC---------CCeEEEEEcCCCcccccccc
Confidence 344555554331 2221123678999999999999 88999998862 24799999999999988
Q ss_pred ----HHHhhh-cccCCCCC--CCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCC-CeeEEEe-cccc
Q 004421 307 ----VVRMTY-FGHKQPDA--DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG-KDNLEIP-IVSY 377 (754)
Q Consensus 307 ----l~~~l~-fG~S~k~~--~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~g-~~~i~VP-i~s~ 377 (754)
+.-+|. +-.+.|-. .-..+-|..|+|.++ .-.|+..+.|.+++++. .+.+.|..| .-.-.++ +...
T Consensus 91 ~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~sv-vNALS~~l~v~v~r~g~----~~~q~f~~Gg~~~~~l~~ig~~ 165 (226)
T 4emv_A 91 GIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV-VNALSSWLEVEITRDGA----VYKQRFENGGKPVTTLKKIGTA 165 (226)
T ss_dssp GCBHHHHHHHCBC--------------CGGGCCHHH-HHHTEEEEEEEEEETTE----EEEEEEETTTEESSCSEEEEEC
T ss_pred CceehheeEEeecccCccCccceEeccccccccchh-hhhcccceEEEEEeCCc----EEEEEECCCCEEcCCceEeccc
Confidence 444453 22222211 125678999999954 44588999999998774 345666544 2111111 1112
Q ss_pred --CCCCcEEEEEeccccchhhhhhhhhhhhcCCCchhhHHHhhhcccCCCCCcEEEEEeccC
Q 004421 378 --YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 437 (754)
Q Consensus 378 --~~~Gt~I~l~~~~~~e~~~~~~L~~I~kySPF~s~pI~el~~~~~~~~~GT~III~NL~r 437 (754)
...||+|+..+..+. + +-.-|....|.+.+..++--..|.+|.+.+-+.
T Consensus 166 ~~~~~GT~V~F~PD~~i-F----------~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~ 216 (226)
T 4emv_A 166 LKSKTGTKVTFMPDATI-F----------STTDFKYNTISERLNESAFLLKNVTLSLTDKRT 216 (226)
T ss_dssp CTTCCEEEEEEEECTTT-C----------SCCCCCHHHHHHHHHHHHHHHCSCEEEEEETTT
T ss_pred CCCCCCeEEEEEECHHH-c----------CCCCcCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence 457999887653321 1 011122222232222222124788998887653
No 29
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.34 E-value=9.4e-07 Score=99.35 Aligned_cols=96 Identities=22% Similarity=0.342 Sum_probs=68.0
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-cccCCCCCCCCCccc
Q 004421 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (754)
Q Consensus 254 ~pf~AIaELIDNS~DAgAt-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~S~k~~~d~~~IG 327 (754)
.+..+|.|||+||+||++. .|.|.+.... ...+...|+|.|||.||+.+++..++. |..+.+. ......|
T Consensus 32 ~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~---~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 107 (471)
T 1mu5_A 32 ALYQTVRELIENSLDATDVHGILPNIKITIDLID---DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 107 (471)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEE---TTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECC---CcCcEEEEEEEECCCCCCHHHHHHHhccccccccc-ccccCCC
Confidence 4678999999999999876 6777776410 012456899999999999999999875 4333332 1235668
Q ss_pred ccCceeeeecc---cccce-EEEEEeeCCC
Q 004421 328 RFGVGFKTGAM---RLGKD-ALVLTQTADS 353 (754)
Q Consensus 328 ~fGiGfKsAsm---rLG~~-v~V~SK~~g~ 353 (754)
..|+|+..+.. ..|.. +.|.|+..+.
T Consensus 108 g~GLGL~iv~~l~~~~gG~~i~v~S~~~~g 137 (471)
T 1mu5_A 108 MYGLGVKAAVLYSQMHQDKPIEIETSPVNS 137 (471)
T ss_dssp SCTTTHHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred CceeeHHHHHHHHHHhCCCceeEEEecCCC
Confidence 89999965432 23444 9999987764
No 30
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.32 E-value=8.6e-07 Score=101.02 Aligned_cols=96 Identities=22% Similarity=0.342 Sum_probs=69.0
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-cccCCCCCCCCCccc
Q 004421 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (754)
Q Consensus 254 ~pf~AIaELIDNS~DAgAt-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~S~k~~~d~~~IG 327 (754)
.+..+|.|||+||+||++. .|.|.+.... ...+...|+|.|||.||+.+++..++. |..+.+. ......|
T Consensus 31 ~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~---~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 106 (530)
T 2zbk_B 31 ALYQTVRELIENSLDATDVHGILPNIKITIDLID---DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 106 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEE---TTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECC---CcCceEEEEEEECCCCCCHHHHHHHhccccccCCc-ccccCCC
Confidence 4678999999999999886 7888886410 012456899999999999999998875 4333332 1235678
Q ss_pred ccCceeeeecc---cccce-EEEEEeeCCC
Q 004421 328 RFGVGFKTGAM---RLGKD-ALVLTQTADS 353 (754)
Q Consensus 328 ~fGiGfKsAsm---rLG~~-v~V~SK~~g~ 353 (754)
..|+|+..+.. ..|.. +.|.|+..+.
T Consensus 107 g~GLGLsiv~~l~~~~gG~~I~V~S~~~~g 136 (530)
T 2zbk_B 107 MYGLGVKAAVLYSQMHQDKPIEIETSPVNS 136 (530)
T ss_dssp SSSSHHHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred CccchHHHHHHHHHHhCCCceEEEEecCCC
Confidence 89999965432 23444 9999987664
No 31
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.20 E-value=1.8e-06 Score=95.41 Aligned_cols=120 Identities=17% Similarity=0.147 Sum_probs=70.3
Q ss_pred HHHHHHHHhccccc----CCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhH--------HHhhh-cccCCCC--C
Q 004421 256 FGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPD--A 320 (754)
Q Consensus 256 f~AIaELIDNS~DA----gAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel--------~~~l~-fG~S~k~--~ 320 (754)
...+.||||||+|+ .++.|+|.|.. ...|+|.|||.||+.+.. .-+|+ +-.+.|- .
T Consensus 52 ~hlv~EivdNsiDea~ag~~~~I~V~i~~---------dgsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~ 122 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAKQIEVTLYK---------DGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNR 122 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEECT---------TSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC---------
T ss_pred chhhHHHHHHHHHHhhcCCCceEEEEEeC---------CCeEEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCC
Confidence 67999999999999 89999998862 248999999999998873 22232 1111121 1
Q ss_pred CCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEe-cccc--CCCCcEEEEEec
Q 004421 321 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IVSY--YRKGQFMELDTV 389 (754)
Q Consensus 321 ~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~g~~~i~VP-i~s~--~~~Gt~I~l~~~ 389 (754)
.-..+-|..|+|.+ +.-.|+..+.|.++.++. .+.+.|..|.-.-.++ +... ...||+|+..+.
T Consensus 123 ~ykvSgGlhGvG~s-vVNALS~~l~v~v~rdGk----~~~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~PD 189 (408)
T 3lnu_A 123 NYTFSGGLHGVGVS-VVNALSTKVELFIKREGS----EHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWAD 189 (408)
T ss_dssp -----------CHH-HHHHTEEEEEEEEEETTE----EEEEEEETTEECSCCEEEEECCTTCCEEEEEEEEC
T ss_pred ceeecCCccccccc-eehhccCeEEEEEEECCE----EEEEEECCCEECCCceEeccCcCCCCCcEEEEEEC
Confidence 12467799999994 444589999999998774 3556665442111111 1112 357999887653
No 32
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.09 E-value=2.3e-06 Score=99.11 Aligned_cols=95 Identities=20% Similarity=0.327 Sum_probs=64.1
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-cccCCCCCCCCCccc
Q 004421 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (754)
Q Consensus 254 ~pf~AIaELIDNS~DAgAt-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~S~k~~~d~~~IG 327 (754)
.+..+|.|||+||+||+++ .|.|.+... +.+...|+|.|||.||+.+++..++. |..+.+-.......|
T Consensus 37 ~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~-----~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~G 111 (621)
T 2q2e_B 37 SLITTVKEAVDNALDACEEAGILPDILVQVERT-----GPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRG 111 (621)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEE-----TTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCS
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEC-----CCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCC
Confidence 4678999999999999875 677766531 11345899999999999999999875 322222111224558
Q ss_pred ccCceeeeecc---cc-cceEEEEEeeCCC
Q 004421 328 RFGVGFKTGAM---RL-GKDALVLTQTADS 353 (754)
Q Consensus 328 ~fGiGfKsAsm---rL-G~~v~V~SK~~g~ 353 (754)
..|+|+..+.. .+ |..+.|.|+..+.
T Consensus 112 g~GlGLsiv~~ls~~~gG~~I~V~S~~~gg 141 (621)
T 2q2e_B 112 QQGIGISAAVLYAQMTAGRHTKILSKTSPT 141 (621)
T ss_dssp SSSHHHHHHHHHHHHHTCCCCEEEEECSSS
T ss_pred CceechhhhhHHHHHhCCCceeEEeeccCC
Confidence 89999965432 22 3337888887763
No 33
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=97.94 E-value=2.3e-05 Score=78.71 Aligned_cols=146 Identities=19% Similarity=0.228 Sum_probs=84.0
Q ss_pred CHHHHHHHHHhccccc---C-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCccccc
Q 004421 254 WIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 329 (754)
Q Consensus 254 ~pf~AIaELIDNS~DA---g-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~d~~~IG~f 329 (754)
-+...+.|||+||+|+ | |+.|+|.+.. ...++|.|||.||+.+.-. .+ +.. ....+ |
T Consensus 31 gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~---------~g~i~V~DnG~Gip~~~h~------~~-~~~-~~e~i--~ 91 (198)
T 3ttz_A 31 GLHHLVWEIVDNSIDEALAGYANQIEVVIEK---------DNWIKVTDNGRGIPVDIQE------KM-GRP-AVEVI--L 91 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEG---------GGEEEEEECSSCCCCSBCT------TT-SSB-HHHHH--H
T ss_pred chHHHHHHHHHHHHhHHhcCCCcEEEEEEeC---------CCeEEEEECCCCccccccC------cC-CCc-ccccc--c
Confidence 3678999999999994 7 8999999873 2389999999999986210 00 000 00011 2
Q ss_pred CceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCe--eE-EEeccccCCCCcEEEEEeccccchhhhhhhhhhhhc
Q 004421 330 GVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NL-EIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEF 406 (754)
Q Consensus 330 GiGfKsAsmrLG~~v~V~SK~~g~~svg~ls~sf~~g~~--~i-~VPi~s~~~~Gt~I~l~~~~~~e~~~~~~L~~I~ky 406 (754)
+ . ++.-.|+..+.|.+++++. .+.+.|..|.- .. .++ .-...||+|++.+.... +. +-
T Consensus 92 t--~-SvVNALS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~~i~--~~~~~GT~V~F~Pd~~i-F~---------~~ 152 (198)
T 3ttz_A 92 T--S-SVVNALSQDLEVYVHRNET----IYHQAYKKGVPQFDLKEVG--TTDKTGTVIRFKADGEI-FT---------ET 152 (198)
T ss_dssp H--T-CHHHHTEEEEEEEEEETTE----EEEEEEETTEESSCCEEEE--ECSCCEEEEEEEECTTT-CC---------SC
T ss_pred e--e-EehhhhcCeEEEEEEECCc----EEEEEEeCCEECCCceecc--CCCCCCcEEEEEECHHH-hc---------cC
Confidence 2 1 2223577899999998874 35566654421 11 122 23467999987643221 10 11
Q ss_pred CCCchhhHHHhhhcccCCCCCcEEEEEeccC
Q 004421 407 SPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 437 (754)
Q Consensus 407 SPF~s~pI~el~~~~~~~~~GT~III~NL~r 437 (754)
.-|...-|.+.+..++--..|.+|.+.+-+.
T Consensus 153 ~~~~~~~l~~rlrelA~ln~gv~i~l~der~ 183 (198)
T 3ttz_A 153 TVYNYETLQQRIRELAFLNKGIQITLRDERD 183 (198)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTCEEEEEECSS
T ss_pred CccCHHHHHHHHHHHhhcCCCCEEEEEeecC
Confidence 1222222333322222225799999987653
No 34
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.86 E-value=3e-05 Score=86.03 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHH--------hhh---cccCCC
Q 004421 255 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY---FGHKQP 318 (754)
Q Consensus 255 pf~AIaELIDNS~DAg-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~--------~l~---fG~S~k 318 (754)
+...+.|+||||+|+. ++.|+|.|+. +...++|.|||.||+.+.... .|+ -|.+-.
T Consensus 65 L~~lv~EivdNaiDe~~~~g~~~~I~V~i~~--------d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd 136 (418)
T 1pvg_A 65 LFKIFDEILVNAADNKVRDPSMKRIDVNIHA--------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYD 136 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCC
T ss_pred HHHHHHHHHhCHHHHHHhcCCCCEEEEEEEC--------CCCEEEEEECCCcccCcccccCCcccceEEEEEEecccccC
Confidence 5678999999999985 6899999873 225899999999998776322 232 122211
Q ss_pred CCCCCCcccccCceeeeecccccceEEEEEee--CCCCceeEEEEEecCCCeeEEEe-cccc--CCCCcEEEEEec
Q 004421 319 DADDPNRIGRFGVGFKTGAMRLGKDALVLTQT--ADSRSIAFLSQSLNQGKDNLEIP-IVSY--YRKGQFMELDTV 389 (754)
Q Consensus 319 ~~~d~~~IG~fGiGfKsAsmrLG~~v~V~SK~--~g~~svg~ls~sf~~g~~~i~VP-i~s~--~~~Gt~I~l~~~ 389 (754)
...-..+-|..|+|. ++.=.|...+.|.++. ++. .+.++|..|.....-| +... ...||+|...+.
T Consensus 137 ~~~ykvSGGLhGVG~-SvVNALS~~l~V~v~r~rdGk----~y~q~f~~G~~~~~~p~i~~~~~~~tGT~V~F~PD 207 (418)
T 1pvg_A 137 DDEKKVTGGRNGYGA-KLCNIFSTEFILETADLNVGQ----KYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPD 207 (418)
T ss_dssp TTSCCCCSCCSSCHH-HHHHHTEEEEEEEEEETTTTE----EEEEEEETTTTEECCCEEEECCSSCCEEEEEEEEC
T ss_pred CCceeccCCccceee-eeeeeccceEEEEEEECCCCc----EEEEEEEcCCCccCCCeecccCCCCCceEEEEEEC
Confidence 111245679999998 4555689999999985 442 3556675441111111 1111 347999887654
No 35
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.74 E-value=5.1e-05 Score=69.66 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCceee
Q 004421 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (754)
Q Consensus 255 pf~AIaELIDNS~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~d~~~IG~fGiGfK 334 (754)
+..++.+||+||+.+....|.|.+.. ..+...|.|.|||.||+.+++.+++.-..+.+.. .+..|+|+.
T Consensus 45 l~~il~nLl~NAi~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~-----~~g~GlGL~ 113 (152)
T 1id0_A 45 FVEVMGNVLDNACKYCLEFVEISARQ------TDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL-----RPGQGVGLA 113 (152)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEEEE------CSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC-----CTTCCSCHH
T ss_pred HHHHHHHHHHHHHHhCcCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHHHhccceeccCC-----CCCcccCHH
Confidence 55789999999999987777777653 3456789999999999999998887644333211 135688875
Q ss_pred eec---ccccceEEEEEee
Q 004421 335 TGA---MRLGKDALVLTQT 350 (754)
Q Consensus 335 sAs---mrLG~~v~V~SK~ 350 (754)
.+- -.+|-.+.+.+..
T Consensus 114 i~~~~~~~~gG~i~~~~~~ 132 (152)
T 1id0_A 114 VAREITEQYEGKIVAGESM 132 (152)
T ss_dssp HHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHcCCEEEEEeCC
Confidence 432 2356777776643
No 36
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.63 E-value=9.2e-05 Score=69.06 Aligned_cols=88 Identities=17% Similarity=0.123 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCceee
Q 004421 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (754)
Q Consensus 255 pf~AIaELIDNS~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~d~~~IG~fGiGfK 334 (754)
+..+|.+||+||+.+....|.|.+.. ..+...|.|.|||.||+.+++.+++...++.+.. ...+..|+|+.
T Consensus 48 l~~il~nll~NAik~~~~~I~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~---~~~~g~GlGL~ 118 (161)
T 1bxd_A 48 IKRAVANMVVNAARYGNGWIKVSSGT------EPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA---RTISGTGLGLA 118 (161)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEEEEE------ETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC---CCCCCCSCCCC
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC---CCCCCcccCHH
Confidence 55789999999999998888888764 2346789999999999999998887643333221 11245788886
Q ss_pred eec---ccccceEEEEEeeC
Q 004421 335 TGA---MRLGKDALVLTQTA 351 (754)
Q Consensus 335 sAs---mrLG~~v~V~SK~~ 351 (754)
.+- -.+|-.+.+.+...
T Consensus 119 i~~~~~~~~gG~i~~~~~~~ 138 (161)
T 1bxd_A 119 IVQRIVDNHNGMLELGTSER 138 (161)
T ss_dssp TTHHHHHHHTSEEEEEEETT
T ss_pred HHHHHHHHcCCEEEEEECCC
Confidence 432 13577777776533
No 37
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.46 E-value=0.00013 Score=73.11 Aligned_cols=90 Identities=12% Similarity=0.141 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCccccc
Q 004421 255 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 329 (754)
Q Consensus 255 pf~AIaELIDNS~DAgAt-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~d~~~IG~f 329 (754)
+..+|..||+||+++... .|.|.+.. ..+.-.|.|.|||.||+++++.++|.-.++.+.. .....+-.
T Consensus 139 l~~il~NLl~NAik~~~~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~~G~ 211 (258)
T 2c2a_A 139 IRQVLLNLLNNGVKYSKKDAPDKYVKVILDE------KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSS-LTYEVPGT 211 (258)
T ss_dssp HHHHHHHHHHHHHHTCCTTCTTCEEEEEEEE------ETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC----------C
T ss_pred HHHHHHHHHHHHHhcCcCCCCceeEEEEEec------CCCeEEEEEEecCCCCCHHHHHhhccccccCCCC-CCCCCCCc
Confidence 457899999999998542 36665543 2345679999999999999999888633322211 11122346
Q ss_pred Cceeeeec---ccccceEEEEEeeC
Q 004421 330 GVGFKTGA---MRLGKDALVLTQTA 351 (754)
Q Consensus 330 GiGfKsAs---mrLG~~v~V~SK~~ 351 (754)
|+|+..+- -..|-.+.|.|...
T Consensus 212 GLGL~i~~~iv~~~gG~i~v~s~~~ 236 (258)
T 2c2a_A 212 GLGLAITKEIVELHGGRIWVESEVG 236 (258)
T ss_dssp CCTHHHHHHHHHHTTCEEEEEEETT
T ss_pred chHHHHHHHHHHHcCCEEEEEecCC
Confidence 88875332 24577787777643
No 38
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.45 E-value=0.00022 Score=65.53 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCcee
Q 004421 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (754)
Q Consensus 255 pf~AIaELIDNS~DAgA-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~d~~~IG~fGiGf 333 (754)
+..+|.+|++||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+.+++.+++........ ...+..|+|+
T Consensus 47 l~~il~nLl~NA~~~~~~~~I~i~~~~------~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~----~~~~g~GlGL 116 (150)
T 1ysr_A 47 LRLAVDNAIANAVKHGGATLVQLSAVS------SRAGVEIAIDDNGSGVPEGERQVVFERFSRGST----ASHSGSGLGL 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEEEE------ETTEEEEEEEESSSCCCGGGHHHHHTSCC---------------CCC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEe------cCCEEEEEEEECCCCCCHHHHHHHhcccccCCC----CCCCCCCcCH
Confidence 45789999999999864 356665543 234578999999999999999998763332111 1123468887
Q ss_pred eeec---ccccceEEEEEee
Q 004421 334 KTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 334 KsAs---mrLG~~v~V~SK~ 350 (754)
..+- -.+|-.+.+.+..
T Consensus 117 ~i~~~~~~~~gG~i~~~~~~ 136 (150)
T 1ysr_A 117 ALVAQQAQLHGGTASLENSP 136 (150)
T ss_dssp HHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHcCCEEEEeecC
Confidence 5432 2456677776653
No 39
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.36 E-value=7.9e-05 Score=71.49 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcccccC--------------CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhH
Q 004421 255 IFGAIAELVDNSRDAK--------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 307 (754)
Q Consensus 255 pf~AIaELIDNS~DAg--------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel 307 (754)
+..+|.+||+||+.++ ...|.|.+.. ..+.-.|.|.|||.||+++++
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~~ 108 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKI 108 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEE------ETTEEEEEEEECSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHH
Confidence 4457999999999985 3466666653 235678999999999999987
No 40
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.34 E-value=0.00029 Score=70.58 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004421 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNS~DAgA--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~d~~~IG~fGiG 332 (754)
+..+|.+||+||+++.. ..|.|.+.. ..+...|.|.|||.||+.+++.+++....+.+. +..|+|
T Consensus 156 l~~il~nLl~NA~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~-------~g~GlG 222 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPPGGRVTLSARR------ALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR-------GGPGLG 222 (268)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEEEEEE------CSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS-------CCCTTH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEe------cCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC-------CCCccc
Confidence 56799999999999965 466666653 345678999999999999999888764433221 346888
Q ss_pred eeeec---ccccceEEEEEee
Q 004421 333 FKTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 333 fKsAs---mrLG~~v~V~SK~ 350 (754)
+..+- -.+|..+.+.+..
T Consensus 223 L~i~~~~~~~~gG~i~i~s~~ 243 (268)
T 4ew8_A 223 LALVKALVELHGGWVALESEP 243 (268)
T ss_dssp HHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 75432 2457777776654
No 41
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.30 E-value=0.00021 Score=77.90 Aligned_cols=91 Identities=14% Similarity=0.268 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCC----
Q 004421 255 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 321 (754)
Q Consensus 255 pf~AIaELIDNS~DAgA---------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~---- 321 (754)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|||.||+++++.++|...++.+...
T Consensus 244 L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~ 317 (407)
T 2q8g_A 244 LYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTL------GNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVET 317 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccc
Confidence 45689999999999843 268887764 34567899999999999999999987544433210
Q ss_pred -CCCcccccCceeeeec---ccccceEEEEEeeC
Q 004421 322 -DPNRIGRFGVGFKTGA---MRLGKDALVLTQTA 351 (754)
Q Consensus 322 -d~~~IG~fGiGfKsAs---mrLG~~v~V~SK~~ 351 (754)
.....+-+|+|+..+- -..|-++.|.|...
T Consensus 318 ~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g 351 (407)
T 2q8g_A 318 SRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEG 351 (407)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred cCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcCC
Confidence 1234466889985332 23577777777543
No 42
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.27 E-value=0.00023 Score=77.13 Aligned_cols=90 Identities=19% Similarity=0.272 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCC----
Q 004421 255 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 321 (754)
Q Consensus 255 pf~AIaELIDNS~DAgA---------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~---- 321 (754)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.++|...++.+...
T Consensus 231 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~ 304 (394)
T 2e0a_A 231 LHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVL------GKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDN 304 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEE------CSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC----
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEe------CCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCc
Confidence 45688999999999843 258888764 34567899999999999999999987554433210
Q ss_pred -CCCcccccCceeeeec---ccccceEEEEEee
Q 004421 322 -DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 322 -d~~~IG~fGiGfKsAs---mrLG~~v~V~SK~ 350 (754)
.....+-+|+|+..+- -..|-++.|.|..
T Consensus 305 ~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2e0a_A 305 SRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLS 337 (394)
T ss_dssp --CCCSSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCCCcccCHHHHHHHHHHhCCEEEEEecC
Confidence 1223466889985432 2457777777754
No 43
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.27 E-value=0.0003 Score=64.79 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=52.5
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccc
Q 004421 254 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (754)
Q Consensus 254 ~pf~AIaELIDNS~DAgA-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~d~~~IG~ 328 (754)
.+..+|.|||+||+.++. ..|.|.+.. ..+.-.|.|.|||.||+ ++.+.+.-..+.+. ..+.
T Consensus 39 ~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~-----~~~~ 105 (145)
T 1th8_A 39 EIKTVVSEAVTNAIIHGYNNDPNGIVSISVII------EDGVVHLTVRDEGVGIP--DIEEARQPLFTTKP-----ELER 105 (145)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEE------ETTEEEEEEEECSSCCS--CHHHHTCCC------------CC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE------eCCEEEEEEEECCCCcC--hHHHhhcccccCCC-----CCCC
Confidence 356899999999998863 567776653 23467899999999999 66776653333221 1234
Q ss_pred cCceeeeecccccceEEEEEee
Q 004421 329 FGVGFKTGAMRLGKDALVLTQT 350 (754)
Q Consensus 329 fGiGfKsAsmrLG~~v~V~SK~ 350 (754)
.|+|+..+. ++.+.+.+.+..
T Consensus 106 ~GlGL~iv~-~~~~~i~~~~~~ 126 (145)
T 1th8_A 106 SGMGFTIME-NFMDEVIVESEV 126 (145)
T ss_dssp CSCHHHHHH-HHSSEEEEEEET
T ss_pred CcchHHHHH-HHHheEEEEeCC
Confidence 588885433 344466665543
No 44
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.26 E-value=0.00039 Score=68.24 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004421 255 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNS~DAg--At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~d~~~IG~fGiG 332 (754)
+..+|.+||+||+.+. +..|.|.+.. ..+...|.|.|||.||+.+++.+++....+.+ ..+..|+|
T Consensus 124 l~~il~nLl~NA~~~~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~------~~~g~GlG 191 (244)
T 3d36_A 124 FRQCLLNVMKNAIEAMPNGGTLQVYVSI------DNGRVLIRIADTGVGMTKEQLERLGEPYFTTK------GVKGTGLG 191 (244)
T ss_dssp HHHHHHHHHHHHHHTCTTCEEEEEEEEE------ETTEEEEEEEECSSCCCHHHHHHTTSTTCCSS------GGGCCSCH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEEE------eCCEEEEEEEecCCCCCHHHHHHHhcccccCC------CCCCcchh
Confidence 5678999999999996 4567776653 34567899999999999999998876444332 12346888
Q ss_pred eeeec---ccccceEEEEEeeC
Q 004421 333 FKTGA---MRLGKDALVLTQTA 351 (754)
Q Consensus 333 fKsAs---mrLG~~v~V~SK~~ 351 (754)
+..+- -.+|-.+.+.+...
T Consensus 192 L~i~~~i~~~~gG~i~~~~~~~ 213 (244)
T 3d36_A 192 MMVVYRIIESMNGTIRIESEIH 213 (244)
T ss_dssp HHHHHHHHHHTTCEEEEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 75432 24577777777543
No 45
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.21 E-value=0.00023 Score=64.92 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004421 255 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNS~DAg--At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~d~~~IG~fGiG 332 (754)
+..+|.+|++||+.+. ...|.|.+.. ..+.-.|.|.|||.||+.+++.+++....+.+ -+..|+|
T Consensus 48 l~~il~nll~NAi~~~~~~~~I~i~~~~------~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~-------~~g~GlG 114 (152)
T 3a0y_A 48 IKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK-------TQGTGLG 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEEE------CSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC---------CCCCS
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHhHhhhhccCC-------CCCCCcC
Confidence 5578999999999985 4567776653 34567899999999999999988875433322 1346888
Q ss_pred eeeec--c--cccceEEEEEe
Q 004421 333 FKTGA--M--RLGKDALVLTQ 349 (754)
Q Consensus 333 fKsAs--m--rLG~~v~V~SK 349 (754)
+..+- + ..|..+.+.+.
T Consensus 115 L~i~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 115 LSICRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp HHHHHHHHHTTTSCEEEEEEE
T ss_pred HHHHHHHHHHhCCcEEEEecC
Confidence 86432 2 46777776664
No 46
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.21 E-value=0.00024 Score=77.80 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcccccCC----------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCC----
Q 004421 255 IFGAIAELVDNSRDAKA----------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA---- 320 (754)
Q Consensus 255 pf~AIaELIDNS~DAgA----------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~---- 320 (754)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.++|...++.+..
T Consensus 254 L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~ 327 (419)
T 1y8o_A 254 LFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTL------GKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLE 327 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCcc
Confidence 44689999999999843 268887764 3456789999999999999999998744433221
Q ss_pred -CCCCcccccCceeeeec---ccccceEEEEEee
Q 004421 321 -DDPNRIGRFGVGFKTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 321 -~d~~~IG~fGiGfKsAs---mrLG~~v~V~SK~ 350 (754)
......+-+|+|+..+- -..|-++.|.|..
T Consensus 328 ~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~ 361 (419)
T 1y8o_A 328 PTRAAPLAGFGYGLPISRLYARYFQGDLKLYSME 361 (419)
T ss_dssp -----CC--CTTHHHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecC
Confidence 01223456889985432 2457777777754
No 47
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.18 E-value=0.00017 Score=77.79 Aligned_cols=91 Identities=22% Similarity=0.342 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcccccCC----------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCC---
Q 004421 255 IFGAIAELVDNSRDAKA----------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD--- 321 (754)
Q Consensus 255 pf~AIaELIDNS~DAgA----------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~--- 321 (754)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|||.||+++++.++|...++.+...
T Consensus 239 L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~ 312 (388)
T 1gkz_A 239 LDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN------NDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQD 312 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEE------CSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC------
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEe------CCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccc
Confidence 56799999999999942 168888764 34567899999999999999999887444333210
Q ss_pred ----------------CCCcccccCceeeeec---ccccceEEEEEeeC
Q 004421 322 ----------------DPNRIGRFGVGFKTGA---MRLGKDALVLTQTA 351 (754)
Q Consensus 322 ----------------d~~~IG~fGiGfKsAs---mrLG~~v~V~SK~~ 351 (754)
.....+-+|+|+..+- -.+|-++.|.|...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g 361 (388)
T 1gkz_A 313 PRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQG 361 (388)
T ss_dssp -------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred cccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecCC
Confidence 0123356788885432 24577888877643
No 48
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.17 E-value=0.00026 Score=76.67 Aligned_cols=91 Identities=14% Similarity=0.287 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCC----
Q 004421 255 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 321 (754)
Q Consensus 255 pf~AIaELIDNS~DAgA---------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~---- 321 (754)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|||.||+++++.++|...++.+...
T Consensus 232 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~ 305 (394)
T 2btz_A 232 LYHMLFELFKNAMRATVESHESSLILPPIKVMVAL------GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGT 305 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC------
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEe------CCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCccc
Confidence 45689999999999842 258888764 34567899999999999999999987544433210
Q ss_pred CCCcccccCceeeeec---ccccceEEEEEeeC
Q 004421 322 DPNRIGRFGVGFKTGA---MRLGKDALVLTQTA 351 (754)
Q Consensus 322 d~~~IG~fGiGfKsAs---mrLG~~v~V~SK~~ 351 (754)
.....+-+|+|+..+- -.+|-++.|.|...
T Consensus 306 ~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g 338 (394)
T 2btz_A 306 GGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEG 338 (394)
T ss_dssp --------CCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCCCccCCHHHHHHHHHHhCCEEEEEecCC
Confidence 1223456888885432 24577788877543
No 49
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.17 E-value=0.00021 Score=69.05 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCceee
Q 004421 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (754)
Q Consensus 255 pf~AIaELIDNS~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~d~~~IG~fGiGfK 334 (754)
+..+|.+||+||+.+....-.|.|... ...|.|.|||.||+++++.+++....+.+. ...+..|+|+.
T Consensus 118 l~~il~nLl~NAi~~~~~~~~i~i~~~--------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~~g~GlGL~ 185 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSPQGSVVDVTLN--------ADNFIVRDNGPGVTPEALARIGERFYRPPG----QTATGSGLGLS 185 (222)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEEC--------SSEEEEECSCC------------------------------CTHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEc--------cCeEEEEECCCCCCHHHHHHHHhhhccCCC----CCCCcccccHH
Confidence 557899999999999765444555431 122999999999999999888763333221 12234688875
Q ss_pred eec---ccccceEEEEEeeC
Q 004421 335 TGA---MRLGKDALVLTQTA 351 (754)
Q Consensus 335 sAs---mrLG~~v~V~SK~~ 351 (754)
.+- -.+|-++.|.|...
T Consensus 186 i~~~i~~~~gG~i~i~s~~~ 205 (222)
T 3jz3_A 186 IVQRIAKLHGMNVEFGNAEQ 205 (222)
T ss_dssp HHHHHHHHTTCEEECCBCTT
T ss_pred HHHHHHHHcCCEEEEEcCCC
Confidence 332 13455555555433
No 50
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.15 E-value=0.00034 Score=66.29 Aligned_cols=92 Identities=17% Similarity=0.279 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004421 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNS~DAgA--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~d~~~IG~fGiG 332 (754)
+..+|.+||+||+.+.. ..+.|.+... ...+...|.|.|||.||+.+++.+++....+.... .....+..|+|
T Consensus 44 l~~il~nLl~NAi~~~~~~~~i~I~i~~~----~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~-~~~~~~g~GlG 118 (177)
T 3sl2_A 44 ITQVLDNIISNALKYSPEGGHVTFSIDVN----EEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKA-RTRKLGGTGLG 118 (177)
T ss_dssp HHHHHHHHHHHHHHTCCTTCCEEEEEEEE----TTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC-------CCCCCCH
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEEc----cCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCC-CCCCCCCCCcC
Confidence 45789999999999864 4566665321 13455679999999999999998887643332211 12233457888
Q ss_pred eeeec---ccccceEEEEEeeC
Q 004421 333 FKTGA---MRLGKDALVLTQTA 351 (754)
Q Consensus 333 fKsAs---mrLG~~v~V~SK~~ 351 (754)
+..+- -.+|..+.+.+...
T Consensus 119 L~iv~~~~~~~~G~i~i~~~~~ 140 (177)
T 3sl2_A 119 LAIAKEMVQAHGGDIWADSIEG 140 (177)
T ss_dssp HHHHHHHHHHTTCCEEEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 76432 24566777766543
No 51
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.11 E-value=0.00063 Score=60.82 Aligned_cols=69 Identities=19% Similarity=0.291 Sum_probs=51.0
Q ss_pred CHHHHHHHHHhcccccC-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004421 254 WIFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 254 ~pf~AIaELIDNS~DAg-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~d~~~IG~fGiG 332 (754)
.+..++.||++||+.+. +..|.|.+.. ..+ -.|.|.|||.||++++ .|+|
T Consensus 43 ~l~~il~nll~NA~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~----------------------~GlG 93 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHAAASTLTVRVKV------DDD-LCIEVTDNGRGMPDEF----------------------TGSG 93 (129)
T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEEEE------SSE-EEEEEEECCCCCTTTT----------------------CSHH
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEE------cCC-EEEEEecCCCCCCccc----------------------CCcC
Confidence 46789999999999986 6788888764 334 7899999999998765 3788
Q ss_pred eeeec---ccccceEEEEEeeC
Q 004421 333 FKTGA---MRLGKDALVLTQTA 351 (754)
Q Consensus 333 fKsAs---mrLG~~v~V~SK~~ 351 (754)
+..+. -.+|-.+.+.+...
T Consensus 94 L~i~~~~~~~~gG~i~~~~~~~ 115 (129)
T 3zxo_A 94 LTNLRQRAEQAGGEFTLASMPG 115 (129)
T ss_dssp HHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHcCCEEEEeeCCC
Confidence 75332 24566777776554
No 52
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.06 E-value=0.00028 Score=63.87 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCcee
Q 004421 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (754)
Q Consensus 255 pf~AIaELIDNS~DAg-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~d~~~IG~fGiGf 333 (754)
+..++.||++||+.+. +..|.|.+.. ..+.-.|.|.|||.||+++++ +..|+|+
T Consensus 41 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~-------------------~g~GlGL 95 (128)
T 3ehg_A 41 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS-------------------FSKGHGL 95 (128)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCSCSSC-------------------CCTTSHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEE------eCCEEEEEEEECCcCcCcccC-------------------CCCCccH
Confidence 5678999999999874 6778887764 335678999999999988764 2247887
Q ss_pred eeec---ccccceEEEEEee
Q 004421 334 KTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 334 KsAs---mrLG~~v~V~SK~ 350 (754)
..+. -.+|-.+.+.|..
T Consensus 96 ~~~~~~~~~~gG~i~~~s~~ 115 (128)
T 3ehg_A 96 LGMRERLEFANGSLHIDTEN 115 (128)
T ss_dssp HHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHcCCEEEEEeCC
Confidence 5322 2356677776654
No 53
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=97.00 E-value=0.00066 Score=73.62 Aligned_cols=88 Identities=16% Similarity=0.222 Sum_probs=54.6
Q ss_pred HHHHHHHHhcccccC------------C--CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhH--------------
Q 004421 256 FGAIAELVDNSRDAK------------A--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV-------------- 307 (754)
Q Consensus 256 f~AIaELIDNS~DAg------------A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel-------------- 307 (754)
..++.+||.||++++ . ..|.|.+.. .++.-.|.|.|||.||+++.+
T Consensus 108 ~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~------~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~ 181 (379)
T 1b3q_A 108 GEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESK 181 (379)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE------ETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTT
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhh
Confidence 456899999999997 2 356666553 345678999999999999987
Q ss_pred ----------HHhhhcccCCCCCCCCCcccccCceeeee---cccccceEEEEEeeC
Q 004421 308 ----------VRMTYFGHKQPDADDPNRIGRFGVGFKTG---AMRLGKDALVLTQTA 351 (754)
Q Consensus 308 ----------~~~l~fG~S~k~~~d~~~IG~fGiGfKsA---smrLG~~v~V~SK~~ 351 (754)
...|..|++.+. .....+-.|+|+..+ .-.+|-.+.|.|...
T Consensus 182 ~~~~~~~~~~~~iF~p~fst~~--~~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g 236 (379)
T 1b3q_A 182 AATLSDQEILNFLFVPGFSTKE--KVSEVSGRGVGMDVVKNVVESLNGSMGIESEKD 236 (379)
T ss_dssp TTTSCTHHHHSGGGSTTCC-------------CCCSHHHHHHHHHTTCEEEEEEETT
T ss_pred hhcCCHHHHHHHhcCCCCccCC--ccCCCCCccccHHHHHHHHHHCCCEEEEEEcCC
Confidence 334444555432 123345568888532 225678888888654
No 54
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=96.98 E-value=0.00017 Score=66.21 Aligned_cols=90 Identities=12% Similarity=0.133 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcccccC---CCccEEEEEeccccc----CCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCccc
Q 004421 255 IFGAIAELVDNSRDAK---ATKLEISIESIYFKK----AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 327 (754)
Q Consensus 255 pf~AIaELIDNS~DAg---At~V~I~I~~~~~~~----~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~d~~~IG 327 (754)
+..+|.+|++||+.+. ...|.|.+....+.. .......|.|.|||.||+.+++.+++....+.+. +
T Consensus 49 l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~-------~ 121 (160)
T 1r62_A 49 IEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE-------G 121 (160)
T ss_dssp HHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC-------------------------
T ss_pred HHHHHHHHHHHHHHHhhccCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-------C
Confidence 5578999999999985 556777665311000 0001457899999999999999888754333221 3
Q ss_pred ccCceeeeec---ccccceEEEEEeeC
Q 004421 328 RFGVGFKTGA---MRLGKDALVLTQTA 351 (754)
Q Consensus 328 ~fGiGfKsAs---mrLG~~v~V~SK~~ 351 (754)
..|+|+..+- -.+|-.+.+.+...
T Consensus 122 g~GlGL~i~~~~~~~~gG~l~i~s~~~ 148 (160)
T 1r62_A 122 GTGLGLSIARNLIDQHSGKIEFTSWPG 148 (160)
T ss_dssp --CHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCccCHHHHHHHHHHCCCeEEEEeCCC
Confidence 4688875432 24577777776543
No 55
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=96.84 E-value=0.00075 Score=65.57 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCcee
Q 004421 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (754)
Q Consensus 255 pf~AIaELIDNS~DAg-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~d~~~IG~fGiGf 333 (754)
+..++.||++||+.++ +..|.|.+.. ..+.-.|.|.|||.||+++.+ +-.|+|+
T Consensus 131 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~-------------------~g~GlGL 185 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS-------------------FSKGHGL 185 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCC---------------------------CHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEE------eCCEEEEEEEECCcCCCCCCC-------------------CCCCCCH
Confidence 5578999999999874 5678877764 345678999999999999875 1237787
Q ss_pred eeec---ccccceEEEEEee
Q 004421 334 KTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 334 KsAs---mrLG~~v~V~SK~ 350 (754)
..+- -.+|-.+.|.|..
T Consensus 186 ~~~~~~v~~~gG~i~~~s~~ 205 (218)
T 3ehh_A 186 LGMRERLEFANGSLHIDTEN 205 (218)
T ss_dssp HHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHcCCEEEEeCCC
Confidence 4321 2456777776654
No 56
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.63 E-value=0.0011 Score=68.66 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004421 255 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNS~DAg--At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~S~k~~~d~~~IG~fGiG 332 (754)
+..+|.+||+||+.+. +..|.|.+.. ..+.-.|.|.|||.||+++++.+++...++.+. +..|+|
T Consensus 245 l~~vl~nLl~NA~k~~~~~~~i~i~~~~------~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~-------~g~GlG 311 (349)
T 3a0r_A 245 IKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT-------QGTGLG 311 (349)
T ss_dssp HHHHHHHHHTHHHHTTCTTCCEEEEEEE------ETTEEEEEEEEESCCCCGGGGTTTSSSCCCC-------------CC
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEEEe------cCCEEEEEEEECCCCCChHHHhhcCCCCccCCC-------CCccch
Confidence 5678999999999996 4677777764 345678999999999999999888764443331 235888
Q ss_pred eeeec--c--cccceEEEEEe
Q 004421 333 FKTGA--M--RLGKDALVLTQ 349 (754)
Q Consensus 333 fKsAs--m--rLG~~v~V~SK 349 (754)
+..+- + ..|..+.+.+.
T Consensus 312 L~i~~~~v~~~~gg~i~~~~~ 332 (349)
T 3a0r_A 312 LSICRKIIEDEHGGKIWTENR 332 (349)
T ss_dssp CTHHHHHHHHTTCSBCCEEEC
T ss_pred HHHHHHHHHHhCCCEEEEEeC
Confidence 75331 1 35666666554
No 57
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=96.04 E-value=0.0044 Score=54.99 Aligned_cols=46 Identities=26% Similarity=0.368 Sum_probs=36.8
Q ss_pred CHHHHHHHHHhcccccC-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHh
Q 004421 254 WIFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 306 (754)
Q Consensus 254 ~pf~AIaELIDNS~DAg-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee 306 (754)
.+..++.||++||+.++ +..|.|.+.. ..+ -.|.|.|||.||++++
T Consensus 39 ~l~~il~nll~Na~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 39 HAEAVLREAVSNAVRHANATSLAINVSV------EDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEEEEE------EEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEEe------CCC-EEEEEEECCCCCCccc
Confidence 36689999999999985 4577777764 234 7899999999999876
No 58
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.026 Score=69.90 Aligned_cols=86 Identities=17% Similarity=0.291 Sum_probs=54.4
Q ss_pred HHHHHHHHHhccccc---C-C-CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHh--------HHHhhh-c--ccCCC
Q 004421 255 IFGAIAELVDNSRDA---K-A-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-F--GHKQP 318 (754)
Q Consensus 255 pf~AIaELIDNS~DA---g-A-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------l~~~l~-f--G~S~k 318 (754)
+.--+.|+||||+|. | + +.|+|.|+. +...++|.|||-||+-+. +.-+|+ + |.+-.
T Consensus 60 L~hl~~EildNsiDea~ag~~~~~I~V~i~~--------~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd 131 (1177)
T 4gfh_A 60 LFKIFDEILVNAADNKVRDPSMKRIDVNIHA--------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYD 131 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCC
T ss_pred eeeEeeEEEEChHhHHhhCCCCCeEEEEEEC--------CCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcC
Confidence 446789999999994 3 3 678888862 246899999999998542 111222 1 21111
Q ss_pred CCCCCCcccccCceeeeecccccceEEEEEe
Q 004421 319 DADDPNRIGRFGVGFKTGAMRLGKDALVLTQ 349 (754)
Q Consensus 319 ~~~d~~~IG~fGiGfKsAsmrLG~~v~V~SK 349 (754)
...-..+-|..|+|.+ +.=.|...+.|.+.
T Consensus 132 ~~~ykvSGGLHGVG~s-vVNALS~~~~vev~ 161 (1177)
T 4gfh_A 132 DDEKKVTGGRNGYGAK-LCNIFSTEFILETA 161 (1177)
T ss_dssp CSSCCCCSCCSSCHHH-HHHHTEEEEEEEEE
T ss_pred CCCCeEeccCCChhhh-HHhhcCCceEEEEE
Confidence 1112456699999984 43347777766554
No 59
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=93.52 E-value=0.051 Score=54.86 Aligned_cols=82 Identities=9% Similarity=-0.088 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCcCEEEEEeCCCC--CCHHhHHHhhhcccCCCCCCCCCcccccC
Q 004421 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHG--MTHQDVVRMTYFGHKQPDADDPNRIGRFG 330 (754)
Q Consensus 255 pf~AIaELIDNS~DAgA--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~G--Mt~eel~~~l~fG~S~k~~~d~~~IG~fG 330 (754)
...++.-|++||++|.. ..|.|.+.. ..+...|.|.|+|.| |+++.+...+.-..+. ..+-.|
T Consensus 147 ~~qvl~NLl~NA~~a~~~gg~I~v~~~~------~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~-------~~~G~G 213 (247)
T 4fpp_A 147 SSRAVLNIAQIAASALPAGGVATVKGVA------ADGRFSIIADAKGPRARLRPEVLAGLKGEPLAE-------GLGGPW 213 (247)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEEEEE------ETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCS-------SCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEEE------ECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCC-------CCCCcc
Confidence 45788899999999954 367776654 345678999999977 6666666665321111 122348
Q ss_pred ceeeee---cccccceEEEEEe
Q 004421 331 VGFKTG---AMRLGKDALVLTQ 349 (754)
Q Consensus 331 iGfKsA---smrLG~~v~V~SK 349 (754)
+|+..+ .-..|-.+.|.|.
T Consensus 214 LGLai~~~iv~~hGG~i~v~s~ 235 (247)
T 4fpp_A 214 VQAAYLNALVRAAGGQIAVEIG 235 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEEc
Confidence 887532 1245777777664
No 60
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=93.34 E-value=0.011 Score=70.20 Aligned_cols=46 Identities=41% Similarity=0.859 Sum_probs=37.2
Q ss_pred CceeeCc--cchhhccCCCCCC-CCCCCCCceecCCCC-------CCCCCCCcccc
Q 004421 644 QEWVQCN--KCRKWRMLDPGFD-TKSLPVEWFCYMKPF-------EGLCDLPEQKV 689 (754)
Q Consensus 644 ~~WvQCd--~C~KWR~Lp~~~~-~~~lp~~W~C~mnp~-------~~sC~~pEe~~ 689 (754)
.-|+||- .|.|||+||.... ...++.+..|.|-++ ...|+.||+.-
T Consensus 91 ~~~~~c~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 146 (776)
T 4gut_A 91 PYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKPETSDHCSLPEDLR 146 (776)
T ss_dssp CCEEECCCTTTCCEEECCTTCCCCHHHHHHCCTTCCCC-------CCGGGSCCCHH
T ss_pred cHhhhcCcccccchhhCCCcCCCChhhhheeeccCccCcccccccCCCCCCCcccc
Confidence 4899999 9999999998865 356788999998642 37799999843
No 61
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=92.36 E-value=0.066 Score=44.80 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=25.3
Q ss_pred CCceeeCccchhhccCC-CCCCCCCCCCCceec
Q 004421 643 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCY 674 (754)
Q Consensus 643 ~~~WvQCd~C~KWR~Lp-~~~~~~~lp~~W~C~ 674 (754)
...+||||.|..|-.+. .++....+|+.|+|.
T Consensus 30 ~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~ 62 (68)
T 3o70_A 30 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 62 (68)
T ss_dssp TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCH
T ss_pred CCCEEECCCCCccccccccCcCcccCCCcEECC
Confidence 45799999999998877 344445678999995
No 62
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=91.50 E-value=0.07 Score=42.11 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=25.4
Q ss_pred CCceeeCccchhhccCC-CCCCCCCCCCCceec
Q 004421 643 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCY 674 (754)
Q Consensus 643 ~~~WvQCd~C~KWR~Lp-~~~~~~~lp~~W~C~ 674 (754)
...+||||.|..|-.+. .++....+|+.|+|.
T Consensus 15 ~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~ 47 (52)
T 3o7a_A 15 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 47 (52)
T ss_dssp TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCH
T ss_pred CCCEEEcCCCCccccccccCCCcccCCCcEECc
Confidence 45899999999998887 344444678999995
No 63
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=90.81 E-value=0.12 Score=42.09 Aligned_cols=36 Identities=19% Similarity=0.492 Sum_probs=24.6
Q ss_pred CCCCCceeeCccchhhccCCC-CCCC--CCCCCCceecC
Q 004421 640 YKPDQEWVQCNKCRKWRMLDP-GFDT--KSLPVEWFCYM 675 (754)
Q Consensus 640 ~~~~~~WvQCd~C~KWR~Lp~-~~~~--~~lp~~W~C~m 675 (754)
+.+...|||||.|..|-+..= ++.. ...++.|+|..
T Consensus 16 ~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 54 (64)
T 1we9_A 16 YAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPS 54 (64)
T ss_dssp CCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHH
T ss_pred cCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCC
Confidence 334578999999999977652 3332 23468999853
No 64
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.86 E-value=0.21 Score=41.92 Aligned_cols=31 Identities=23% Similarity=0.848 Sum_probs=23.4
Q ss_pred CceeeCccchhhccCCC-CCC-CCCCCCCceec
Q 004421 644 QEWVQCNKCRKWRMLDP-GFD-TKSLPVEWFCY 674 (754)
Q Consensus 644 ~~WvQCd~C~KWR~Lp~-~~~-~~~lp~~W~C~ 674 (754)
..|||||.|..|-++.= ++. ...+|+.|+|.
T Consensus 29 ~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~ 61 (72)
T 1wee_A 29 ERMLACDGCGVWHHTRCIGINNADALPSKFLCF 61 (72)
T ss_dssp SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCH
T ss_pred CcEEECCCCCCccCCeeeccCccccCCCcEECC
Confidence 47999999999987762 333 23578999995
No 65
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=89.62 E-value=0.16 Score=45.23 Aligned_cols=33 Identities=30% Similarity=0.815 Sum_probs=25.9
Q ss_pred CCceeeCccchhhccCC-CCCCCCCCCCCceecC
Q 004421 643 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCYM 675 (754)
Q Consensus 643 ~~~WvQCd~C~KWR~Lp-~~~~~~~lp~~W~C~m 675 (754)
...+||||.|.+|-.+. .++....+|+.|+|..
T Consensus 39 ~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~ 72 (98)
T 2lv9_A 39 DGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCER 72 (98)
T ss_dssp SSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTT
T ss_pred CCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCC
Confidence 45899999999998876 3344467889999964
No 66
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=88.51 E-value=0.33 Score=52.79 Aligned_cols=47 Identities=26% Similarity=0.322 Sum_probs=34.0
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHH
Q 004421 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (754)
Q Consensus 254 ~pf~AIaELIDNS~DAg-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (754)
.+.-++.||+.||+..+ ...|.|.+... ..+.-.|.|.|+|.|+++.
T Consensus 297 ~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~-----~~~~l~i~V~D~G~g~~~~ 348 (399)
T 3ke6_A 297 DIVHAISEFVENAVEHGYATDVSKGIVVAAALA-----GDGNVRASVIDRGQWKDHR 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEEC-----TTSEEEEEEEESCBC----
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEc-----CCCEEEEEEEECCCCCCCC
Confidence 45689999999999986 56788877641 1345789999999999875
No 67
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=81.21 E-value=0.37 Score=40.75 Aligned_cols=35 Identities=14% Similarity=0.392 Sum_probs=23.3
Q ss_pred CCCCceeeCccchhhccCC-CCCCCC--CCCCCceecC
Q 004421 641 KPDQEWVQCNKCRKWRMLD-PGFDTK--SLPVEWFCYM 675 (754)
Q Consensus 641 ~~~~~WvQCd~C~KWR~Lp-~~~~~~--~lp~~W~C~m 675 (754)
-++..|||||.|..|=... .++... ..++.|+|..
T Consensus 20 ~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~ 57 (75)
T 3kqi_A 20 DVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPN 57 (75)
T ss_dssp CTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHH
T ss_pred CCCCCEEEcCCCCCCEecccccccccccCCCCEEECCC
Confidence 3467999999999997654 122222 2347899863
No 68
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.28 E-value=0.2 Score=42.70 Aligned_cols=33 Identities=15% Similarity=0.389 Sum_probs=22.6
Q ss_pred CCCceeeCccchhhccCC-CCCC--CCCCCCCceec
Q 004421 642 PDQEWVQCNKCRKWRMLD-PGFD--TKSLPVEWFCY 674 (754)
Q Consensus 642 ~~~~WvQCd~C~KWR~Lp-~~~~--~~~lp~~W~C~ 674 (754)
....|||||.|..|=+.. .++. ....++.|+|.
T Consensus 23 ~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 58 (79)
T 1wep_A 23 VNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCP 58 (79)
T ss_dssp SSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCT
T ss_pred CCCceEEcCCCCCcEEeeecCcccccccCCCeEECC
Confidence 367999999999996543 1222 12346899996
No 69
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=76.73 E-value=1.3 Score=36.60 Aligned_cols=32 Identities=22% Similarity=0.803 Sum_probs=23.7
Q ss_pred CCceeeCc--cchhhccCC-CCC-----CCCCCCCCceec
Q 004421 643 DQEWVQCN--KCRKWRMLD-PGF-----DTKSLPVEWFCY 674 (754)
Q Consensus 643 ~~~WvQCd--~C~KWR~Lp-~~~-----~~~~lp~~W~C~ 674 (754)
+..+|||| .|..|-+.. .++ ....+|++|||.
T Consensus 21 ~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~ 60 (68)
T 2rsd_A 21 NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCE 60 (68)
T ss_dssp CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCH
T ss_pred CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECc
Confidence 45899999 599998877 233 224578899995
No 70
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=76.52 E-value=1.2 Score=44.00 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=25.9
Q ss_pred CCccEEEEEecccccCC--CCcCEEEEEeCCCCCCHHhHHHhhh
Q 004421 271 ATKLEISIESIYFKKAG--KDIPMLSIIDDGHGMTHQDVVRMTY 312 (754)
Q Consensus 271 At~V~I~I~~~~~~~~~--~~~~~L~I~DNG~GMt~eel~~~l~ 312 (754)
...|.|.+.. . ++...|.|.|+|.|++.+.+.++|.
T Consensus 130 ~~~I~i~i~~------~~~~~~l~i~V~d~G~~i~~e~~~~if~ 167 (192)
T 1ixm_A 130 ENHLTVSLQT------DHPDRQLILYLDFHGAFADPSAFDDIRQ 167 (192)
T ss_dssp CCEEEEEEEC------CCSSSSCEEEEEEESCBSCGGGCC----
T ss_pred CCeEEEEEEE------ecCCCEEEEEEEeCCCCCCHHHHHHHHh
Confidence 4678888764 2 4578999999999999998877764
No 71
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=74.68 E-value=0.53 Score=45.43 Aligned_cols=34 Identities=21% Similarity=0.546 Sum_probs=23.0
Q ss_pred CCCceeeCccchhhccCC-CCCC--CCCCCCCceecC
Q 004421 642 PDQEWVQCNKCRKWRMLD-PGFD--TKSLPVEWFCYM 675 (754)
Q Consensus 642 ~~~~WvQCd~C~KWR~Lp-~~~~--~~~lp~~W~C~m 675 (754)
....|||||.|..|=+.. .++. ....++.|+|..
T Consensus 19 ~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~ 55 (174)
T 2ri7_A 19 ESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQ 55 (174)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHH
T ss_pred CCCCEeECCCCCchhChhhcCCchhhccCccCeecCC
Confidence 356899999999995543 1221 124578999964
No 72
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=74.35 E-value=0.81 Score=38.35 Aligned_cols=32 Identities=22% Similarity=0.724 Sum_probs=20.4
Q ss_pred CCceeeCccchhhccCC-CCCCCCC-CCCCceec
Q 004421 643 DQEWVQCNKCRKWRMLD-PGFDTKS-LPVEWFCY 674 (754)
Q Consensus 643 ~~~WvQCd~C~KWR~Lp-~~~~~~~-lp~~W~C~ 674 (754)
...|||||.|..|=.+. .++.... ..+.|+|.
T Consensus 30 ~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~ 63 (75)
T 2k16_A 30 GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCP 63 (75)
T ss_dssp SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCT
T ss_pred CCCEEEcCCCCcccccccCCCCccCCCCCCEECh
Confidence 34799999999996543 1111111 23799995
No 73
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=74.27 E-value=1.1 Score=35.11 Aligned_cols=35 Identities=26% Similarity=0.702 Sum_probs=23.5
Q ss_pred CCCCCceeeCc-cchhhccCCC-CCCCC-CCCCCceec
Q 004421 640 YKPDQEWVQCN-KCRKWRMLDP-GFDTK-SLPVEWFCY 674 (754)
Q Consensus 640 ~~~~~~WvQCd-~C~KWR~Lp~-~~~~~-~lp~~W~C~ 674 (754)
|.++..||||| .|.+|=.+.= ++... ..+++|+|.
T Consensus 12 ~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~ 49 (52)
T 2kgg_A 12 CKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICI 49 (52)
T ss_dssp CCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCS
T ss_pred cCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECC
Confidence 44567899999 8999977652 33211 124789985
No 74
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=74.11 E-value=0.92 Score=38.60 Aligned_cols=33 Identities=21% Similarity=0.701 Sum_probs=23.8
Q ss_pred CCCceeeCc--cchhhccCC-CCCCC------CCCCCCceec
Q 004421 642 PDQEWVQCN--KCRKWRMLD-PGFDT------KSLPVEWFCY 674 (754)
Q Consensus 642 ~~~~WvQCd--~C~KWR~Lp-~~~~~------~~lp~~W~C~ 674 (754)
.+..||||| .|..|-++. .++.. ...|++|+|.
T Consensus 26 ~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~ 67 (78)
T 1wew_A 26 ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCE 67 (78)
T ss_dssp CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCH
T ss_pred CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECC
Confidence 356899999 999998764 12221 1578999995
No 75
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=71.48 E-value=1.3 Score=36.59 Aligned_cols=19 Identities=32% Similarity=0.758 Sum_probs=15.7
Q ss_pred CCCCCceeeCc-cchhhccC
Q 004421 640 YKPDQEWVQCN-KCRKWRML 658 (754)
Q Consensus 640 ~~~~~~WvQCd-~C~KWR~L 658 (754)
+.++..||||| .|.+|=..
T Consensus 18 ~~~~~~mI~CD~~C~~WfH~ 37 (65)
T 2vpb_A 18 VNDDQDAILCEASCQKWFHR 37 (65)
T ss_dssp CCTTSCEEEBTTTTCCEEEH
T ss_pred cCCCCCeEecccCccccCch
Confidence 55678999999 99999543
No 76
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.27 E-value=4 Score=36.06 Aligned_cols=30 Identities=27% Similarity=0.801 Sum_probs=20.6
Q ss_pred CceeeCcc--ch-hhccCCC-CCCCCCCCCCceec
Q 004421 644 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 674 (754)
Q Consensus 644 ~~WvQCd~--C~-KWR~Lp~-~~~~~~lp~~W~C~ 674 (754)
..+||||. |. .|=++.= ++. ...+++|||.
T Consensus 47 g~MI~CD~~dC~~~WfH~~CVgl~-~~p~g~W~Cp 80 (91)
T 1weu_A 47 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 80 (91)
T ss_dssp SCCCCCSCSSCSCCCCCSTTTTCS-SCCCSSCCCT
T ss_pred CCEeEecCCCCCCCCEecccCCcC-cCCCCCEECc
Confidence 47999999 77 8976652 222 2235799996
No 77
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.95 E-value=3.3 Score=34.73 Aligned_cols=32 Identities=19% Similarity=0.566 Sum_probs=21.2
Q ss_pred CCceeeCccchhhccCC-CCCCCCC------CCCCceec
Q 004421 643 DQEWVQCNKCRKWRMLD-PGFDTKS------LPVEWFCY 674 (754)
Q Consensus 643 ~~~WvQCd~C~KWR~Lp-~~~~~~~------lp~~W~C~ 674 (754)
...|||||.|..|-+.. .++.... .++.|+|.
T Consensus 27 ~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~ 65 (76)
T 1wem_A 27 NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICP 65 (76)
T ss_dssp SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCH
T ss_pred CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECc
Confidence 35899999999996654 1222111 36889995
No 78
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=55.91 E-value=5.7 Score=33.30 Aligned_cols=30 Identities=27% Similarity=0.801 Sum_probs=20.8
Q ss_pred CceeeCcc--ch-hhccCCC-CCCCCCCCCCceec
Q 004421 644 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 674 (754)
Q Consensus 644 ~~WvQCd~--C~-KWR~Lp~-~~~~~~lp~~W~C~ 674 (754)
..+||||. |. .|=++.= ++. ....++|||.
T Consensus 27 g~MI~CD~~~C~~~wfH~~Cvgl~-~~p~g~w~Cp 60 (71)
T 1wen_A 27 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 60 (71)
T ss_dssp SSEECCSCSSCSCCCEETTTTTCS-SCCSSCCCCT
T ss_pred CCEeEeeCCCCCCccEecccCCcC-cCCCCCEECC
Confidence 57999999 87 7977652 332 2224899995
No 79
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=49.61 E-value=5.7 Score=32.44 Aligned_cols=30 Identities=20% Similarity=0.706 Sum_probs=20.1
Q ss_pred CceeeCcc--ch-hhccCC-CCCCCCCCCCCceec
Q 004421 644 QEWVQCNK--CR-KWRMLD-PGFDTKSLPVEWFCY 674 (754)
Q Consensus 644 ~~WvQCd~--C~-KWR~Lp-~~~~~~~lp~~W~C~ 674 (754)
..+||||. |. .|=++. .++. ....++|||.
T Consensus 22 g~MI~CD~c~C~~~WfH~~Cvgl~-~~p~~~w~Cp 55 (62)
T 2g6q_A 22 GEMIGCDNEQCPIEWFHFSCVSLT-YKPKGKWYCP 55 (62)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCeeeeeCCCCCcccEecccCCcC-cCCCCCEECc
Confidence 47999999 55 997665 2232 2235799995
No 80
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=49.01 E-value=5.9 Score=31.99 Aligned_cols=30 Identities=23% Similarity=0.739 Sum_probs=20.1
Q ss_pred CceeeCcc--ch-hhccCC-CCCCCCCCCCCceec
Q 004421 644 QEWVQCNK--CR-KWRMLD-PGFDTKSLPVEWFCY 674 (754)
Q Consensus 644 ~~WvQCd~--C~-KWR~Lp-~~~~~~~lp~~W~C~ 674 (754)
..+||||. |. .|=++. .++. ....++|||.
T Consensus 20 g~mi~CD~~~C~~~wfH~~Cvgl~-~~p~~~w~Cp 53 (59)
T 3c6w_A 20 GEMIGCDNPDCPIEWFHFACVDLT-TKPKGKWFCP 53 (59)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCeeEeeCCCCCCCCEecccCCcc-cCCCCCEECc
Confidence 47999999 87 797665 2232 1223799995
No 81
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=47.01 E-value=7 Score=44.50 Aligned_cols=36 Identities=28% Similarity=0.757 Sum_probs=25.7
Q ss_pred CCCCCceeeCccchhhccCC-CCCCC--CCCCCCceecC
Q 004421 640 YKPDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 675 (754)
Q Consensus 640 ~~~~~~WvQCd~C~KWR~Lp-~~~~~--~~lp~~W~C~m 675 (754)
.-++..|||||.|..|=... -++.. ....++|+|-.
T Consensus 52 ~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~ 90 (528)
T 3pur_A 52 KKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPK 90 (528)
T ss_dssp TTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTT
T ss_pred CCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcC
Confidence 34678999999999998764 23332 34568999944
No 82
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=44.60 E-value=7.7 Score=38.28 Aligned_cols=32 Identities=25% Similarity=0.690 Sum_probs=21.2
Q ss_pred CceeeCccchhhccCC-CCCCC------CCCCC--CceecC
Q 004421 644 QEWVQCNKCRKWRMLD-PGFDT------KSLPV--EWFCYM 675 (754)
Q Consensus 644 ~~WvQCd~C~KWR~Lp-~~~~~------~~lp~--~W~C~m 675 (754)
..|||||.|..|=+.. .++.. ..+|+ .|+|..
T Consensus 19 ~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~ 59 (183)
T 3lqh_A 19 SKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVN 59 (183)
T ss_dssp CCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTT
T ss_pred CCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcC
Confidence 3699999999998765 22321 12343 799965
No 83
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=43.53 E-value=3.4 Score=46.68 Aligned_cols=36 Identities=17% Similarity=0.429 Sum_probs=24.4
Q ss_pred CCCCCceeeCccchhhccCC-CCCCC--CCCCCCceecC
Q 004421 640 YKPDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 675 (754)
Q Consensus 640 ~~~~~~WvQCd~C~KWR~Lp-~~~~~--~~lp~~W~C~m 675 (754)
+.+...|||||.|..|=+.. -++.. ...+++|+|..
T Consensus 46 ~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 84 (488)
T 3kv5_D 46 YDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPN 84 (488)
T ss_dssp CCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHH
T ss_pred CCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCC
Confidence 33467899999999997654 12222 23468999964
No 84
>1ow1_A Smart/HDAC1 associated repressor protein; beta-alpha-barrel, SPOC domain,, transcription; 1.80A {Homo sapiens} SCOP: b.131.1.3
Probab=42.91 E-value=13 Score=37.28 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=26.6
Q ss_pred HHHHHHhhcCCeEEEEEec-------eeEEEEeCCC
Q 004421 88 RRFLIYLQGRDMVAIAKFK-------FWEFYILPPD 116 (754)
Q Consensus 88 ~~f~~~l~~~~~~~~~~~~-------~~~~~~~~~~ 116 (754)
..|.+||+.-.-+|||.+. .+-+|||||-
T Consensus 128 ~~fV~YL~qKqAAGIisl~~~~s~~~~~vlhiFPPC 163 (195)
T 1ow1_A 128 AAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPC 163 (195)
T ss_dssp HHTHHHHHHHTEEEEEEECCTTCCSCCEEEEEECSS
T ss_pred HHHHHHHHhCccceEEecCCCCCCCcceEEEEcCCc
Confidence 5599999999999999998 5999999997
No 85
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=42.74 E-value=11 Score=33.04 Aligned_cols=30 Identities=20% Similarity=0.626 Sum_probs=20.0
Q ss_pred CceeeCccch---hhccCC-CCCCCCCCCCCceec
Q 004421 644 QEWVQCNKCR---KWRMLD-PGFDTKSLPVEWFCY 674 (754)
Q Consensus 644 ~~WvQCd~C~---KWR~Lp-~~~~~~~lp~~W~C~ 674 (754)
..+|+||.|. .|=++. .++. ....++|||.
T Consensus 37 g~MI~CD~c~C~~eWfH~~CVgl~-~~p~~~W~Cp 70 (90)
T 2jmi_A 37 GPMVACDNPACPFEWFHYGCVGLK-QAPKGKWYCS 70 (90)
T ss_dssp SSEECCCSSSCSCSCEETTTSSCS-SCTTSCCCSS
T ss_pred CCEEEecCCCCccccCcCccCCCC-cCCCCCccCC
Confidence 3699999976 897665 2332 1223699995
No 86
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=40.25 E-value=9.7 Score=30.72 Aligned_cols=30 Identities=27% Similarity=0.815 Sum_probs=20.1
Q ss_pred CceeeCcc--ch-hhccCC-CCCCCCCCCCCceec
Q 004421 644 QEWVQCNK--CR-KWRMLD-PGFDTKSLPVEWFCY 674 (754)
Q Consensus 644 ~~WvQCd~--C~-KWR~Lp-~~~~~~~lp~~W~C~ 674 (754)
...|+||. |. .|=++. .++. ..-.++|||.
T Consensus 21 g~mi~CD~cdC~~~wfH~~Cvgl~-~~p~g~w~C~ 54 (60)
T 2vnf_A 21 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 54 (60)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCEEEeCCCCCCCceEehhcCCCC-cCCCCCEECc
Confidence 57999999 66 897665 2222 1223899995
No 87
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=39.74 E-value=9.6 Score=34.18 Aligned_cols=36 Identities=25% Similarity=0.697 Sum_probs=22.8
Q ss_pred CCCCCceeeCc-cchhhccCC-CCCCCC-------CCCCCceecC
Q 004421 640 YKPDQEWVQCN-KCRKWRMLD-PGFDTK-------SLPVEWFCYM 675 (754)
Q Consensus 640 ~~~~~~WvQCd-~C~KWR~Lp-~~~~~~-------~lp~~W~C~m 675 (754)
|.++..||||| .|..|=... -++... +-.++|+|..
T Consensus 13 ~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~ 57 (105)
T 2xb1_A 13 VNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDL 57 (105)
T ss_dssp CCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHH
T ss_pred cCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECcc
Confidence 44567899998 999996653 122210 1237899953
No 88
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=34.10 E-value=9.7 Score=35.25 Aligned_cols=16 Identities=25% Similarity=0.777 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHhhcCC
Q 004421 83 DHNEWRRFLIYLQGRD 98 (754)
Q Consensus 83 ~~~ew~~f~~~l~~~~ 98 (754)
...+|++||||+.+++
T Consensus 86 s~~~WdRFMRFMeRYA 101 (120)
T 2kvo_A 86 SQPEWDRFMRFMERYG 101 (120)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3469999999998775
No 89
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=31.45 E-value=11 Score=33.76 Aligned_cols=12 Identities=42% Similarity=1.198 Sum_probs=10.5
Q ss_pred eeeCccchhhcc
Q 004421 646 WVQCNKCRKWRM 657 (754)
Q Consensus 646 WvQCd~C~KWR~ 657 (754)
.||||.|..|=+
T Consensus 2 mi~c~~c~~w~H 13 (140)
T 2ku7_A 2 MMQCGKCDRWVH 13 (140)
T ss_dssp CCCCSCCSSCHH
T ss_pred ccccccCCCccC
Confidence 699999999954
No 90
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.70 E-value=15 Score=30.61 Aligned_cols=31 Identities=23% Similarity=0.587 Sum_probs=20.0
Q ss_pred CCceeeCccch---hhccCC-CCCCCCCCCCCceec
Q 004421 643 DQEWVQCNKCR---KWRMLD-PGFDTKSLPVEWFCY 674 (754)
Q Consensus 643 ~~~WvQCd~C~---KWR~Lp-~~~~~~~lp~~W~C~ 674 (754)
...+||||.|. .|=.+. .++.. ...++|||.
T Consensus 16 ~g~MI~CD~cdC~~~WfH~~Cvgl~~-~p~~~w~Cp 50 (70)
T 1x4i_A 16 YGEMVGCDNQDCPIEWFHYGCVGLTE-APKGKWYCP 50 (70)
T ss_dssp CSSEECCSCTTCSCCCEEHHHHTCSS-CCSSCCCCH
T ss_pred CCCEeEeCCCCCCccCCcccccccCc-CCCCCEECC
Confidence 44899999974 786554 12221 236799995
Done!