BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004423
         (754 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
           MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
           Homolog
          Length = 111

 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 57  CKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHC 116
           C +CG+ YH  CL            + W+CP C++C+ C+++G+ +K + C  CD  YH 
Sbjct: 25  CTTCGQHYHGMCLDIAVTP---LKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHT 81

Query: 117 YCQHPPHKNVSSGPYLC 133
           +C  P  K+V +  + C
Sbjct: 82  FCLQPVMKSVPTNGWKC 98



 Score = 31.6 bits (70), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 53  RMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRIC 92
           +ML C +C K YH  CL+   ++      + WKC +CRIC
Sbjct: 68  KMLVCDTCDKGYHTFCLQPVMKSVPT---NGWKCKNCRIC 104


>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
           Transcriptional Protein Dpf3 Bound To A Histone Peptide
           Containing Acetylation At Lysine 14
 pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
           Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
           Type
 pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
           Fingers Of Human Transcriptional Protein Dpf3b Bound To
           A Histone H4 Peptide Containing Acetylation At Lysine 16
 pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
           Fingers Of Human Transcriptional Protein Dpf3b Bound To
           A Histone H4 Peptide Containing N-Terminal Acetylation
           At Serine 1
          Length = 114

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 40/84 (47%)

Query: 50  RARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRR 109
           R   ++SC  CG+  H  CL+      +      W+C  C+ C +C  + + ++ +FC  
Sbjct: 19  RPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDD 78

Query: 110 CDAAYHCYCQHPPHKNVSSGPYLC 133
           CD  YH YC +PP      G + C
Sbjct: 79  CDRGYHMYCLNPPVAEPPEGSWSC 102


>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
          Length = 92

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 91  ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPK 135
           IC++C R  + +K +FC  CD  YH +C  PP   +  G + CPK
Sbjct: 18  ICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPK 62


>pdb|2LN0|A Chain A, Structure Of Moz
          Length = 110

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 49  ERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTG-DPNKFMFC 107
           ++   ++SC  CG   H +CLK   +         W+C  C+ C  CR  G + +  +FC
Sbjct: 19  KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFC 78

Query: 108 RRCDAAYHCYCQHPPHKNVSSGPYLC 133
             CD  +H  C  PP   +  G ++C
Sbjct: 79  DSCDRGFHMECCDPPLTRMPKGMWIC 104


>pdb|3V43|A Chain A, Crystal Structure Of Moz
          Length = 112

 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 49  ERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTG-DPNKFMFC 107
           ++   ++SC  CG   H +CLK   +         W+C  C+ C  CR  G + +  +FC
Sbjct: 21  KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFC 80

Query: 108 RRCDAAYHCYCQHPPHKNVSSGPYLC 133
             CD  +H  C  PP   +  G ++C
Sbjct: 81  DSCDRGFHMECCDPPLTRMPKGMWIC 106


>pdb|1F62|A Chain A, Wstf-Phd
          Length = 51

 Score = 43.9 bits (102), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 25/43 (58%)

Query: 92  CEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCP 134
           C++CR+ G+ +K + C  C+ A+H +C  P    V  G + CP
Sbjct: 3   CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCP 45


>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
 pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
 pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
 pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
          Length = 226

 Score = 42.0 bits (97), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 89  CRIC--EICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNV-SSGPYLCPK 135
           CR+C   +C    DP+K + C  CD A+H YC  PP  +V S   + CP+
Sbjct: 172 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPE 221


>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
           Homeodomain Of Uhrf1 With Histone H3k9me3
 pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
           Homeodomain Of Uhrf1 With Histone H3k9me3
 pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
           Homeodomain Of Uhrf1 With Histone H3k9me3
 pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
           Homeodomain Of Uhrf1 With Histone H3k9me3
          Length = 241

 Score = 42.0 bits (97), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 89  CRIC--EICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNV-SSGPYLCPK 135
           CR+C   +C    DP+K + C  CD A+H YC  PP  +V S   + CP+
Sbjct: 188 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPE 237


>pdb|3LQH|A Chain A, Crystal Structure Of Mll1 Phd3-Bromo In The Free Form
 pdb|3LQI|A Chain A, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
           H3(1-9)k4me2 Peptide
 pdb|3LQI|B Chain B, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
           H3(1-9)k4me2 Peptide
 pdb|3LQI|C Chain C, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
           H3(1-9)k4me2 Peptide
 pdb|3LQJ|A Chain A, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
           H3(1-9)k4me3 Peptide
 pdb|3LQJ|B Chain B, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
           H3(1-9)k4me3 Peptide
          Length = 183

 Score = 39.7 bits (91), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 172 GNYCPVCLKVYRDSES-TPMVCCDVCQRWVHCQCDGISDEKY-LQFQVDGNLQYRCPTC 228
           GN+CP+C K Y D +  + M+ C  C RWVH +C+ +SDE Y +   +  ++ Y C  C
Sbjct: 2   GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNC 60


>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
           21a
          Length = 56

 Score = 38.1 bits (87), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 91  ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPK 135
            C +CR++G   + + C  C   YH  C  PP K +  G ++CP+
Sbjct: 11  FCSVCRKSG---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPR 52


>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
 pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
          Length = 60

 Score = 37.7 bits (86), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 91  ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPK 135
            C +CR++G   + + C  C   YH  C  PP K +  G ++CP+
Sbjct: 7   FCSVCRKSG---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPR 48


>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
 pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
          Length = 61

 Score = 37.7 bits (86), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 26/45 (57%)

Query: 93  EICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137
           E CR   D  + + C  C ++YH +C +PP   + +G +LCP+ T
Sbjct: 10  EFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 54


>pdb|2KU7|A Chain A, Solution Structure Of Mll1 Phd3-Cyp33 Rrm Chimeric Protein
          Length = 140

 Score = 37.0 bits (84), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 190 MVCCDVCQRWVHCQCDGISDEKY-LQFQVDGNLQYRCPTC 228
           M+ C  C RWVH +C+ +SDE Y +   +  ++ Y C  C
Sbjct: 2   MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNC 41


>pdb|2KYU|A Chain A, The Solution Structure Of The Phd3 Finger Of Mll
          Length = 67

 Score = 37.0 bits (84), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 170 VKGNYCPVCLKVYRDSES-TPMVCCDVCQRWVHCQCDGISDEKY-LQFQVDGNLQYRCPT 227
            KGN+CP+C K Y D +  + M+ C  C RWVH +C+ +SDE Y +   +  ++ Y C  
Sbjct: 3   AKGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVN 62

Query: 228 C 228
           C
Sbjct: 63  C 63


>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
          Length = 77

 Score = 37.0 bits (84), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 89  CRIC--EICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSS 128
           CR+C   +C    DP+K + C  CD A+H YC  PP  +V S
Sbjct: 24  CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPS 65


>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
          Length = 447

 Score = 36.6 bits (83), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 5/39 (12%)

Query: 190 MVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTC 228
           M+ CD+CQ W H  C G+ +EK      D +L Y CP C
Sbjct: 20  MIECDMCQDWFHGSCVGVEEEK----AADIDL-YHCPNC 53


>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
           Histone H3 N-Terminal Tail
 pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
           Histone H3 N-Terminal Tail
          Length = 72

 Score = 36.6 bits (83), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 89  CRIC--EICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNV-SSGPYLCPK 135
           CR+C   +C    DP+K + C  CD A+H YC  PP  +V S   + CP+
Sbjct: 18  CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPE 67


>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
          Length = 57

 Score = 36.6 bits (83), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 92  CEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNV-SSGPYLCPK 135
           C +C    DP+K + C  CD A+H YC  PP  +V S   + CP+
Sbjct: 8   CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPE 52


>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
           1-9 Peptide
 pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
           1-9 Peptide
 pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
           H3k4me3 1-9 Peptide
 pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
           H3k4me3 1-9 Peptide
 pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
 pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
 pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
          Length = 70

 Score = 36.6 bits (83), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 89  CRIC--EICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNV-SSGPYLCPK 135
           CR+C   +C    DP+K + C  CD A+H YC  PP  +V S   + CP+
Sbjct: 16  CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPE 65


>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
           Peptide
 pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
           Histone H3 Peptide
 pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
          Length = 69

 Score = 36.6 bits (83), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 89  CRIC--EICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNV-SSGPYLCPK 135
           CR+C   +C    DP+K + C  CD A+H YC  PP  +V S   + CP+
Sbjct: 16  CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPE 65


>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
           N-Terminal Tail
 pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
           N-Terminal Tail
          Length = 72

 Score = 36.2 bits (82), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 89  CRIC--EICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSS 128
           CR+C   +C    DP+K + C  CD A+H YC  PP  +V S
Sbjct: 21  CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPS 62


>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
           Protein 107
          Length = 77

 Score = 36.2 bits (82), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 85  KCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPY-LCP 134
           KC SC  C +C    +PN  + C  C+ AYH YC +PP   V    Y  CP
Sbjct: 23  KCHSCS-CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCP 72


>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer-
           Obliterator 1(Dio-1)
          Length = 76

 Score = 35.8 bits (81), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 190 MVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTC 228
           M+CCD C+ W H  C GIS+ +    + +G   Y CP C
Sbjct: 30  MICCDRCEEWFHGDCVGISEARGRLLERNGE-DYICPNC 67


>pdb|1WEP|A Chain A, Solution Structure Of Phd Domain In Phf8
          Length = 79

 Score = 34.7 bits (78), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)

Query: 190 MVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 230
           M+ C +CQ W H  C GI +E  +   +     Y CP C  
Sbjct: 27  MIECGLCQDWFHGSCVGIEEENAVDIDI-----YHCPDCEA 62


>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
           Complex With N-Oxalylglycine
 pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
           Complex With N-Oxalylglycine
 pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
           Complex With Alpha-Ketoglutarate
 pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
           Complex With Alpha-Ketoglutarate
          Length = 488

 Score = 34.3 bits (77), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 27/98 (27%)

Query: 190 MVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTC---RGECYQVRDLEDAVRELW 246
           M+ CD+C+ W H  C G+ +       VD +L Y CP C    G     +      R  W
Sbjct: 52  MIECDICKDWFHGSCVGVEEHH----AVDIDL-YHCPNCAVLHGSSLMKK------RRNW 100

Query: 247 RRKDMADKD------------LIASLRAAAGLPTEDEI 272
            R D  + D             I  LR+    P+ DEI
Sbjct: 101 HRHDYTEIDDGSKPVQAGTRTFIKELRSRV-FPSADEI 137


>pdb|2VPE|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-bcl9
           Wnt Signaling Complex
 pdb|2VPE|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-bcl9
           Wnt Signaling Complex
 pdb|2VPG|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
           Wnt Signaling Complex
 pdb|2VPG|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
           Wnt Signaling Complex
          Length = 63

 Score = 33.9 bits (76), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 175 CPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231
           C +C     D +   ++C   CQ+W H  C G+++  Y     + +  + C TC  +
Sbjct: 8   CGICTNEVNDDQDA-ILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMAD 63


>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
           Nog
 pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
 pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
 pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
           And Nog
 pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
           H3k9me2 Peptide And Nog
 pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
           And Nog
 pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
           H3k27me2 Peptide And Nog
 pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
 pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
 pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
 pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
          Length = 528

 Score = 33.9 bits (76), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 191 VCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTC 228
           + CD CQ W H  C G+   +Y  ++     ++ CP C
Sbjct: 59  IGCDSCQTWYHFLCSGLEQFEYYLYE-----KFFCPKC 91


>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
 pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With
           A H3k4me3 Peptide
          Length = 75

 Score = 33.9 bits (76), Expect = 0.38,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 172 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTC 228
           GN   +C    +  + +PM+ CD C  W H  C GI             +Q+ CP C
Sbjct: 15  GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAP------PEEMQWFCPKC 65


>pdb|2VPD|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
           Wnt Signaling Complex
 pdb|2VPD|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
           Wnt Signaling Complex
          Length = 67

 Score = 33.1 bits (74), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 175 CPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231
           C +C     D +   ++C   CQ+W H  C G+++  Y     + +  + C TC  +
Sbjct: 12  CGICTNEVNDDQDA-ILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMAD 67


>pdb|2DX8|A Chain A, Crystal Structure Analysis Of The Phd Domain Of The
           Transcription Coactivator Pygophus
 pdb|2DX8|B Chain B, Crystal Structure Analysis Of The Phd Domain Of The
           Transcription Coactivator Pygophus
          Length = 67

 Score = 33.1 bits (74), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 175 CPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231
           C +C     D +   ++C   CQ+W H  C G+++  Y     + +  + C TC  +
Sbjct: 12  CGICTNEVNDDQDA-ILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMAD 67


>pdb|2VPB|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
           Wnt Signaling Complex
          Length = 65

 Score = 33.1 bits (74), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 175 CPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTC 228
           C +C     D +   ++C   CQ+W H  C G+++  Y     + +  + C TC
Sbjct: 11  CGICTNEVNDDQDA-ILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTC 63


>pdb|2XB1|A Chain A, Crystal Structure Of The Human Pygo2 Phd Finger In Complex
           With The B9l Hd1 Domain
 pdb|2XB1|C Chain C, Crystal Structure Of The Human Pygo2 Phd Finger In Complex
           With The B9l Hd1 Domain
          Length = 105

 Score = 33.1 bits (74), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 175 CPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTC 228
           C  C     D +   ++C   CQ+W H +C G+++  Y     + +  + C  C
Sbjct: 6   CGACRSEVNDDQDA-ILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLC 58


>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
           Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
          Length = 174

 Score = 32.0 bits (71), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 184 DSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 229
           + ES   + CD CQ W H +C GI     LQ + +   +Y CP C+
Sbjct: 17  EDESKFYIGCDRCQNWYHGRCVGI-----LQSEAELIDEYVCPQCQ 57


>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
           Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
 pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
           Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
 pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
           Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
 pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
           Fragment Of Human Bptf In The Free Form
 pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
           Fragment Of Human Bptf In The Free Form
 pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
           Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
 pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
           Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
 pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
           Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
          Length = 174

 Score = 32.0 bits (71), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 8/56 (14%)

Query: 174 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 229
           YC +C   Y   ES   + CD CQ W H +C GI     LQ + +   +Y CP C+
Sbjct: 10  YC-ICKTPY--DESKFYIGCDRCQNWYHGRCVGI-----LQSEAELIDEYVCPQCQ 57


>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
           Histone H4k12ac Peptide
          Length = 174

 Score = 32.0 bits (71), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 8/56 (14%)

Query: 174 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 229
           YC +C   Y   ES   + CD CQ W H +C GI     LQ + +   +Y CP C+
Sbjct: 10  YC-ICKTPY--DESKFYIGCDRCQNWYHGRCVGI-----LQSEAELIDEYVCPQCQ 57


>pdb|1WE9|A Chain A, Solution Structure Of Phd Domain In Nucleic Acid Binding
           Protein-like Np_197993
          Length = 64

 Score = 31.6 bits (70), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 175 CPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTC 228
           C  C + Y   E    +CCD+C+ W H +C  I+  +    +     QY+CP+C
Sbjct: 9   CGACGESYAADEF--WICCDLCEMWFHGKCVKITPARAEHIK-----QYKCPSC 55


>pdb|2YYR|A Chain A, Structural Analysis Of Phd Domain Of Pygopus Complexed
           With Trimethylated Histone H3 Peptide
 pdb|2YYR|B Chain B, Structural Analysis Of Phd Domain Of Pygopus Complexed
           With Trimethylated Histone H3 Peptide
          Length = 67

 Score = 31.6 bits (70), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 175 CPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231
           C +C     D +   ++C   CQ+W H  C G ++  Y     + +  + C TC  +
Sbjct: 12  CGICTNEVNDDQDA-ILCEASCQKWFHRICTGXTETAYGLLTAEASAVWGCDTCXAD 67


>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
           Terminal Loop Replaced By Corresponding Loop From Wstf
          Length = 61

 Score = 31.2 bits (69), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 93  EICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137
           E CR   D  + + C  C ++YH +C  P    V  G + CP+ T
Sbjct: 10  EFCRVCKDGGELLCCDTCPSSYHIHCLRPALYEVPDGEWQCPRCT 54


>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
           Finger-Bromodomain
          Length = 189

 Score = 30.8 bits (68), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 88  SCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCH 140
           S  IC +C++ GD    + C +C+  +H  C  P  ++V    + C   + CH
Sbjct: 1   SATICRVCQKPGD---LVMCNQCEFCFHLDCHLPALQDVPGEEWSC---SLCH 47


>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
           Regulator Protein (Aire1): Insights Into Apeced
 pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
           Recognition By The First Phd Finger Of Autoimmune
           Regulator
          Length = 66

 Score = 30.8 bits (68), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 92  CEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLC 133
           C +CR  G+    + C  C  A+H  C  PP + + SG + C
Sbjct: 11  CAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRC 49


>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
 pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
          Length = 1080

 Score = 30.4 bits (67), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 19/122 (15%)

Query: 617  RLKFRKPNLENQNSQVSQPEEEKSLIKGQRSKRKRPSPFTEKTLFNEDEDAAQSNQDSLM 676
            RL+  +   +N  ++V   +EE + ++ +  + +     TEK    E  D  +   + L+
Sbjct: 971  RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ-----TEKKTIEEWADKYKHETEQLV 1025

Query: 677  SEIMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDT-----VEGTSTLSITLDDSR 731
            SE+ + N +LK   K+ + +R  +H Q+        +T+T     VE T  L + L+D R
Sbjct: 1026 SELKEQNTLLKT-EKEELNRR--IHDQAKE------ITETMEKKLVEETKQLELDLNDER 1076

Query: 732  VK 733
            ++
Sbjct: 1077 LR 1078


>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
           Human Autoimmune Regulator (Aire) In Complex With
           Histone H3(1-20cys) Peptide
          Length = 56

 Score = 30.0 bits (66), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 92  CEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLC 133
           C +CR   D  + + C  C  A+H  C  PP + + SG + C
Sbjct: 8   CAVCR---DGGELICCDGCPRAFHLACLSPPLREIPSGTWRC 46


>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(13-32)k23ac Peptide
 pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(23-31)k27ac Peptide
 pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(23-31)k27ac Peptide
 pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H4(14-19)k16ac Peptide
 pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H4(14-19)k16ac Peptide
 pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
 pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
 pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
 pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
          Length = 184

 Score = 29.6 bits (65), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 92  CEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLC 133
           C +C+  G+    + C +C   +H  C  P   N  SG ++C
Sbjct: 7   CAVCQNGGE---LLCCEKCPKVFHLSCHVPTLTNFPSGEWIC 45


>pdb|3KQI|A Chain A, Crystal Structure Of Phf2 Phd Domain Complexed With
           H3k4me3 Peptide
          Length = 75

 Score = 29.6 bits (65), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)

Query: 190 MVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTC 228
           M+ CD C+ W H  C G+ +E+     +     Y CP C
Sbjct: 25  MIECDACKDWFHGSCVGVEEEEAPDIDI-----YHCPNC 58


>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-20) K9me3k14ac Histone Peptide
 pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-20) K9me3k14ac Histone Peptide
 pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
          Length = 207

 Score = 29.6 bits (65), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 92  CEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLC 133
           C +C+  GD    + C +C   +H  C  P   +  SG ++C
Sbjct: 10  CAVCQNGGD---LLCCEKCPKVFHLTCHVPTLLSFPSGDWIC 48


>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
          Length = 61

 Score = 29.6 bits (65), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 92  CEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCP 134
           CE+C++ G+    + C  C  AYH  C  P  +    G + CP
Sbjct: 14  CEVCQQGGE---IILCDTCPRAYHMVCLDPDMEKAPEGKWSCP 53


>pdb|2VP7|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
           Wnt Signaling Complex
          Length = 71

 Score = 29.3 bits (64), Expect = 7.8,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 175 CPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231
           C +C     D +   ++C   CQ++ H  C G+++  Y     + +  + C TC  +
Sbjct: 12  CGICTNEVNDDQDA-ILCEASCQKFFHRICTGMTETAYGLLTAEASAVWGCDTCMAD 67


>pdb|2CS3|A Chain A, Solution Structure Of The Zf-C3hc4 Domain Of Human
           Kiaa1865
          Length = 93

 Score = 29.3 bits (64), Expect = 9.5,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 87  PSCRICEICRRTGDPNKFMFCRRCDAAYHCY-CQHPPHK-NVSSGPYLCPKHTKCHSCGS 144
           P C  C IC    +   F+ C    +   C+ C     K   ++G   CP   KC   GS
Sbjct: 15  PLC--CTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGS 72

Query: 145 NVP 147
           NVP
Sbjct: 73  NVP 75


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,682,639
Number of Sequences: 62578
Number of extensions: 1045603
Number of successful extensions: 2382
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2280
Number of HSP's gapped (non-prelim): 112
length of query: 754
length of database: 14,973,337
effective HSP length: 106
effective length of query: 648
effective length of database: 8,340,069
effective search space: 5404364712
effective search space used: 5404364712
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)