Query 004423
Match_columns 754
No_of_seqs 281 out of 1789
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 23:11:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4443 Putative transcription 100.0 1.8E-75 3.8E-80 649.0 12.6 591 35-753 19-620 (694)
2 KOG1244 Predicted transcriptio 99.6 2.9E-17 6.2E-22 170.0 1.0 108 30-137 220-329 (336)
3 KOG1512 PHD Zn-finger protein 99.5 4.9E-15 1.1E-19 154.4 1.5 100 33-134 257-357 (381)
4 KOG0954 PHD finger protein [Ge 99.3 2.1E-13 4.5E-18 155.5 0.4 249 33-323 270-536 (893)
5 KOG0956 PHD finger protein AF1 98.7 6.9E-09 1.5E-13 118.6 3.2 136 92-231 8-180 (900)
6 KOG4299 PHD Zn-finger protein 98.6 1.6E-08 3.4E-13 115.4 3.9 47 91-137 255-303 (613)
7 KOG0825 PHD Zn-finger protein 98.5 1.6E-08 3.5E-13 116.7 0.3 47 91-137 217-264 (1134)
8 KOG0383 Predicted helicase [Ge 98.5 1.2E-07 2.6E-12 110.8 6.1 75 59-140 1-94 (696)
9 PF00628 PHD: PHD-finger; Int 98.4 6E-08 1.3E-12 77.2 0.1 48 91-138 1-50 (51)
10 KOG4299 PHD Zn-finger protein 98.3 2.7E-07 5.8E-12 105.6 3.9 51 34-90 253-303 (613)
11 COG5141 PHD zinc finger-contai 98.3 2.4E-07 5.1E-12 103.3 2.0 210 89-310 193-459 (669)
12 KOG4323 Polycomb-like PHD Zn-f 98.3 6.5E-07 1.4E-11 100.4 4.9 134 91-234 85-227 (464)
13 PF15446 zf-PHD-like: PHD/FYVE 98.2 9.3E-07 2E-11 87.6 4.1 86 36-123 1-143 (175)
14 smart00249 PHD PHD zinc finger 98.2 1.1E-06 2.4E-11 66.8 3.5 46 91-136 1-47 (47)
15 KOG0955 PHD finger protein BR1 98.2 1E-06 2.2E-11 106.8 4.2 49 34-90 219-267 (1051)
16 KOG4323 Polycomb-like PHD Zn-f 98.1 1.6E-06 3.5E-11 97.3 2.6 97 33-137 82-222 (464)
17 PF00628 PHD: PHD-finger; Int 98.1 8.1E-07 1.8E-11 70.7 0.1 49 36-90 1-49 (51)
18 smart00249 PHD PHD zinc finger 97.9 8.4E-06 1.8E-10 61.9 3.4 47 174-228 1-47 (47)
19 KOG1512 PHD Zn-finger protein 97.9 3.2E-06 7E-11 89.5 1.3 82 101-229 276-361 (381)
20 KOG4443 Putative transcription 97.9 3.1E-06 6.6E-11 97.5 0.8 90 82-184 11-103 (694)
21 KOG1244 Predicted transcriptio 97.9 3.2E-06 6.9E-11 89.0 0.6 90 97-231 239-331 (336)
22 KOG0956 PHD finger protein AF1 97.8 1E-05 2.2E-10 93.4 2.9 53 36-96 7-69 (900)
23 KOG0383 Predicted helicase [Ge 97.6 2.5E-05 5.5E-10 91.9 2.9 47 33-90 46-92 (696)
24 KOG1973 Chromatin remodeling p 97.5 3.6E-05 7.7E-10 81.9 1.7 47 82-138 218-267 (274)
25 KOG1473 Nucleosome remodeling 97.3 3.9E-05 8.5E-10 92.4 -0.7 93 32-138 342-478 (1414)
26 KOG1973 Chromatin remodeling p 97.2 0.00011 2.3E-09 78.3 1.1 38 186-231 228-268 (274)
27 COG5141 PHD zinc finger-contai 97.1 0.00019 4E-09 80.9 1.9 50 33-90 192-241 (669)
28 KOG0825 PHD Zn-finger protein 97.1 0.00021 4.5E-09 83.9 2.3 49 34-90 215-264 (1134)
29 COG5034 TNG2 Chromatin remodel 97.0 0.00023 5.1E-09 74.8 1.3 46 172-230 221-269 (271)
30 KOG0954 PHD finger protein [Ge 97.0 0.00037 8.1E-09 81.5 2.4 45 91-137 273-319 (893)
31 PF15446 zf-PHD-like: PHD/FYVE 96.9 0.0012 2.5E-08 66.1 4.9 33 91-123 1-36 (175)
32 KOG1473 Nucleosome remodeling 96.8 0.00057 1.2E-08 82.9 2.4 129 91-234 346-482 (1414)
33 KOG0955 PHD finger protein BR1 96.7 0.00093 2E-08 81.9 3.1 108 91-206 221-361 (1051)
34 COG5034 TNG2 Chromatin remodel 96.6 0.00089 1.9E-08 70.6 1.8 41 94-137 225-268 (271)
35 cd04718 BAH_plant_2 BAH, or Br 96.6 0.0012 2.5E-08 65.0 2.3 26 113-138 1-26 (148)
36 KOG1701 Focal adhesion adaptor 96.5 0.00041 8.9E-09 77.3 -1.4 138 36-204 276-427 (468)
37 KOG0957 PHD finger protein [Ge 96.5 0.00085 1.8E-08 75.9 1.1 80 35-120 120-210 (707)
38 smart00333 TUDOR Tudor domain. 96.4 0.0058 1.3E-07 49.3 5.2 52 693-748 4-56 (57)
39 KOG0957 PHD finger protein [Ge 96.3 0.0014 3E-08 74.2 1.0 47 91-137 546-596 (707)
40 KOG1245 Chromatin remodeling c 96.2 0.001 2.2E-08 84.1 -0.6 48 91-138 1110-1157(1404)
41 KOG2752 Uncharacterized conser 95.8 0.0058 1.2E-07 66.2 2.8 90 103-206 67-165 (345)
42 PF09465 LBR_tudor: Lamin-B re 95.7 0.026 5.6E-07 47.3 5.5 48 691-738 5-52 (55)
43 smart00743 Agenet Tudor-like d 95.1 0.041 8.8E-07 45.4 4.9 53 693-746 4-57 (61)
44 cd04508 TUDOR Tudor domains ar 93.9 0.13 2.7E-06 40.2 5.1 42 695-737 1-43 (48)
45 KOG1245 Chromatin remodeling c 93.9 0.016 3.4E-07 73.8 -0.1 54 29-90 1103-1156(1404)
46 KOG1632 Uncharacterized PHD Zn 93.8 0.028 6.1E-07 62.2 1.7 175 53-236 74-300 (345)
47 PF07227 DUF1423: Protein of u 93.6 0.082 1.8E-06 60.1 4.8 68 174-243 130-204 (446)
48 PF13831 PHD_2: PHD-finger; PD 93.3 0.014 3E-07 44.7 -1.3 33 102-136 2-35 (36)
49 cd04718 BAH_plant_2 BAH, or Br 92.5 0.067 1.4E-06 52.9 1.9 24 63-89 1-24 (148)
50 PF13831 PHD_2: PHD-finger; PD 91.7 0.047 1E-06 41.9 -0.2 34 52-89 2-35 (36)
51 KOG0804 Cytoplasmic Zn-finger 90.4 0.17 3.6E-06 57.6 2.4 83 33-147 174-256 (493)
52 KOG1952 Transcription factor N 89.9 0.38 8.2E-06 58.3 4.9 62 35-101 192-263 (950)
53 KOG4628 Predicted E3 ubiquitin 88.4 0.35 7.5E-06 53.8 3.0 36 35-75 230-265 (348)
54 PF09038 53-BP1_Tudor: Tumour 88.3 0.75 1.6E-05 44.3 4.8 45 690-735 1-45 (122)
55 PF11793 FANCL_C: FANCL C-term 87.9 0.15 3.3E-06 44.1 -0.0 54 35-90 3-62 (70)
56 PF13639 zf-RING_2: Ring finge 87.9 0.093 2E-06 40.8 -1.3 44 35-90 1-44 (44)
57 PF13832 zf-HC5HC2H_2: PHD-zin 85.7 0.6 1.3E-05 42.8 2.6 72 36-121 2-87 (110)
58 PF14446 Prok-RING_1: Prokaryo 85.1 0.57 1.2E-05 39.3 1.9 34 35-72 6-39 (54)
59 PF12861 zf-Apc11: Anaphase-pr 84.9 0.28 6.1E-06 44.5 0.0 46 91-138 34-79 (85)
60 PF13639 zf-RING_2: Ring finge 83.4 0.39 8.5E-06 37.3 0.3 43 174-229 2-44 (44)
61 KOG1701 Focal adhesion adaptor 82.5 0.84 1.8E-05 51.9 2.4 10 35-44 300-309 (468)
62 PF13901 DUF4206: Domain of un 82.1 0.76 1.7E-05 47.3 1.8 44 85-137 144-196 (202)
63 PF11793 FANCL_C: FANCL C-term 81.3 1.4 2.9E-05 38.3 2.8 55 174-231 4-64 (70)
64 PF12678 zf-rbx1: RING-H2 zinc 80.9 0.79 1.7E-05 39.9 1.2 50 34-90 19-73 (73)
65 PF07227 DUF1423: Protein of u 78.6 1.4 3.1E-05 50.4 2.7 37 83-120 123-162 (446)
66 KOG2272 Focal adhesion protein 77.5 0.87 1.9E-05 48.8 0.6 72 111-182 159-264 (332)
67 PF02237 BPL_C: Biotin protein 76.9 7.5 0.00016 31.2 5.6 44 694-741 2-46 (48)
68 PF14446 Prok-RING_1: Prokaryo 75.2 1.5 3.3E-05 36.8 1.3 31 91-121 7-38 (54)
69 KOG1169 Diacylglycerol kinase 73.8 3.4 7.5E-05 49.3 4.1 81 36-124 46-149 (634)
70 PF12861 zf-Apc11: Anaphase-pr 72.7 1.8 4E-05 39.4 1.3 52 34-90 21-78 (85)
71 PHA02929 N1R/p28-like protein; 72.4 2.1 4.5E-05 45.6 1.8 41 34-74 174-214 (238)
72 KOG2807 RNA polymerase II tran 72.1 2.8 6.1E-05 46.4 2.7 47 171-230 329-375 (378)
73 PF05641 Agenet: Agenet domain 71.4 8.2 0.00018 33.0 4.9 35 694-729 3-40 (68)
74 PF05502 Dynactin_p62: Dynacti 69.6 2.9 6.3E-05 48.6 2.3 20 52-71 3-22 (483)
75 PF00130 C1_1: Phorbol esters/ 69.6 4.2 9.1E-05 32.5 2.6 37 170-207 9-45 (53)
76 KOG1246 DNA-binding protein ju 69.1 3.7 8E-05 50.9 3.2 46 91-137 157-202 (904)
77 KOG1829 Uncharacterized conser 68.3 1.3 2.7E-05 52.5 -1.0 46 86-138 504-558 (580)
78 cd00162 RING RING-finger (Real 67.4 2.3 5E-05 31.3 0.6 42 36-90 1-42 (45)
79 KOG1169 Diacylglycerol kinase 65.5 1.5 3.3E-05 52.2 -1.1 100 91-211 46-150 (634)
80 PF07076 DUF1344: Protein of u 64.6 6.4 0.00014 34.0 2.8 27 710-738 6-32 (61)
81 PF13771 zf-HC5HC2H: PHD-like 64.3 2.2 4.9E-05 37.5 0.1 28 91-121 38-68 (90)
82 PF10497 zf-4CXXC_R1: Zinc-fin 62.4 4.8 0.0001 37.8 1.9 59 35-99 8-80 (105)
83 PLN03208 E3 ubiquitin-protein 62.2 4.4 9.5E-05 42.0 1.7 33 33-73 17-49 (193)
84 KOG1044 Actin-binding LIM Zn-f 60.7 6.8 0.00015 46.4 3.0 16 152-167 153-168 (670)
85 PF13771 zf-HC5HC2H: PHD-like 59.7 5.1 0.00011 35.3 1.5 32 33-72 35-69 (90)
86 KOG3612 PHD Zn-finger protein 59.5 7.7 0.00017 45.6 3.2 54 29-92 55-108 (588)
87 COG5243 HRD1 HRD ubiquitin lig 57.8 2.9 6.4E-05 47.0 -0.5 54 31-98 284-343 (491)
88 PF13832 zf-HC5HC2H_2: PHD-zin 57.6 6.3 0.00014 36.1 1.8 33 33-72 54-88 (110)
89 PF13901 DUF4206: Domain of un 57.6 9.2 0.0002 39.5 3.1 37 35-71 153-189 (202)
90 PF00567 TUDOR: Tudor domain; 57.2 23 0.0005 31.3 5.3 56 690-748 50-106 (121)
91 KOG1081 Transcription factor N 57.2 3.9 8.3E-05 47.4 0.3 72 171-257 88-163 (463)
92 COG1107 Archaea-specific RecJ- 57.0 9.8 0.00021 45.3 3.5 33 81-116 51-92 (715)
93 PRK14637 hypothetical protein; 55.4 26 0.00057 34.9 5.7 43 692-737 95-137 (151)
94 KOG1734 Predicted RING-contain 53.6 6.4 0.00014 42.9 1.2 41 32-73 222-265 (328)
95 smart00184 RING Ring finger. E 53.5 4.4 9.5E-05 28.7 -0.0 30 37-74 1-30 (39)
96 PF15057 DUF4537: Domain of un 53.3 25 0.00053 33.8 5.0 40 695-735 1-40 (124)
97 KOG2041 WD40 repeat protein [G 51.3 10 0.00022 46.0 2.5 46 91-138 1119-1164(1189)
98 KOG1632 Uncharacterized PHD Zn 49.4 8.9 0.00019 42.9 1.6 39 189-232 74-114 (345)
99 KOG2752 Uncharacterized conser 48.6 11 0.00024 41.7 2.1 19 103-121 147-166 (345)
100 PF05502 Dynactin_p62: Dynacti 45.8 20 0.00043 41.9 3.7 31 103-138 4-34 (483)
101 smart00744 RINGv The RING-vari 45.5 6 0.00013 32.2 -0.4 37 36-76 1-40 (49)
102 TIGR00595 priA primosomal prot 44.1 23 0.00049 41.4 3.8 25 259-283 403-427 (505)
103 PF07649 C1_3: C1-like domain; 43.6 7.6 0.00016 28.3 -0.0 29 91-119 2-30 (30)
104 smart00109 C1 Protein kinase C 43.3 12 0.00026 28.7 1.0 34 171-206 10-43 (49)
105 cd00029 C1 Protein kinase C co 42.1 14 0.00031 28.6 1.3 36 171-207 10-45 (50)
106 KOG1081 Transcription factor N 42.0 25 0.00055 40.8 3.8 32 33-72 88-119 (463)
107 COG5540 RING-finger-containing 41.8 14 0.0003 41.0 1.5 45 35-90 324-368 (374)
108 PF02576 DUF150: Uncharacteris 41.8 43 0.00094 32.4 4.8 44 692-737 84-131 (141)
109 KOG0827 Predicted E3 ubiquitin 41.7 8.1 0.00018 43.9 -0.2 38 34-75 4-41 (465)
110 PRK11911 flgD flagellar basal 41.1 73 0.0016 31.8 6.2 40 692-732 90-129 (140)
111 PF02736 Myosin_N: Myosin N-te 40.0 1E+02 0.0022 24.3 5.7 38 696-736 2-39 (42)
112 COG1198 PriA Primosomal protei 39.2 22 0.00048 43.6 2.9 25 259-283 625-649 (730)
113 KOG4628 Predicted E3 ubiquitin 38.9 16 0.00034 41.2 1.4 45 91-138 231-275 (348)
114 KOG1844 PHD Zn-finger proteins 38.3 18 0.00038 41.6 1.8 41 187-234 98-138 (508)
115 KOG1940 Zn-finger protein [Gen 38.0 9.2 0.0002 41.7 -0.5 44 175-230 161-204 (276)
116 PF07191 zinc-ribbons_6: zinc- 37.4 14 0.00031 32.7 0.6 28 153-180 11-38 (70)
117 PRK14559 putative protein seri 37.2 24 0.00051 42.7 2.7 9 128-136 39-47 (645)
118 PF13923 zf-C3HC4_2: Zinc fing 37.2 12 0.00026 28.4 0.1 39 37-89 1-39 (39)
119 PF12773 DZR: Double zinc ribb 36.7 32 0.0007 27.3 2.6 9 104-112 12-20 (50)
120 PF04216 FdhE: Protein involve 36.3 8.3 0.00018 41.5 -1.2 59 173-231 173-247 (290)
121 KOG1280 Uncharacterized conser 34.9 23 0.00049 39.9 1.9 34 52-100 6-43 (381)
122 KOG3970 Predicted E3 ubiquitin 34.8 55 0.0012 35.2 4.5 72 196-278 70-146 (299)
123 KOG1829 Uncharacterized conser 34.7 14 0.00031 44.0 0.4 37 35-71 512-548 (580)
124 PF12678 zf-rbx1: RING-H2 zinc 34.6 25 0.00055 30.6 1.8 27 193-229 47-73 (73)
125 PRK08330 biotin--protein ligas 33.4 86 0.0019 32.8 5.7 47 694-744 187-235 (236)
126 PF13717 zinc_ribbon_4: zinc-r 33.1 29 0.00063 26.6 1.7 27 175-201 5-36 (36)
127 PF07593 UnbV_ASPIC: ASPIC and 33.0 67 0.0015 27.6 4.1 16 692-708 1-16 (71)
128 PRK09618 flgD flagellar basal 32.9 1.2E+02 0.0025 30.5 6.2 76 651-734 44-130 (142)
129 COG5151 SSL1 RNA polymerase II 32.9 22 0.00048 39.6 1.3 11 80-90 305-315 (421)
130 PF13437 HlyD_3: HlyD family s 32.7 1.2E+02 0.0026 27.0 5.9 45 693-737 52-104 (105)
131 PF04216 FdhE: Protein involve 32.2 24 0.00053 38.0 1.6 32 35-66 173-209 (290)
132 KOG1734 Predicted RING-contain 32.1 12 0.00025 40.9 -0.8 79 171-261 223-305 (328)
133 cd01734 YlxS_C YxlS is a Bacil 32.1 94 0.002 27.6 5.0 35 692-728 22-59 (83)
134 COG2888 Predicted Zn-ribbon RN 32.0 35 0.00076 29.6 2.1 18 82-99 26-48 (61)
135 PF13341 RAG2_PHD: RAG2 PHD do 31.9 28 0.00061 31.0 1.6 39 188-227 28-67 (78)
136 PF00097 zf-C3HC4: Zinc finger 31.7 17 0.00037 27.4 0.2 41 37-89 1-41 (41)
137 PHA02926 zinc finger-like prot 31.6 18 0.00038 38.7 0.4 58 33-92 169-228 (242)
138 smart00547 ZnF_RBZ Zinc finger 31.0 30 0.00064 24.1 1.3 9 82-90 1-9 (26)
139 PF00130 C1_1: Phorbol esters/ 30.9 29 0.00063 27.7 1.4 31 91-121 13-45 (53)
140 PRK14633 hypothetical protein; 30.9 92 0.002 31.0 5.2 44 692-737 91-137 (150)
141 PTZ00275 biotin-acetyl-CoA-car 30.6 82 0.0018 34.2 5.2 41 694-738 236-277 (285)
142 PRK14890 putative Zn-ribbon RN 30.4 45 0.00098 28.8 2.5 8 82-89 24-31 (59)
143 KOG1844 PHD Zn-finger proteins 30.0 29 0.00062 39.9 1.8 43 94-137 90-133 (508)
144 TIGR00622 ssl1 transcription f 29.8 97 0.0021 29.9 4.9 47 173-229 56-110 (112)
145 PRK14559 putative protein seri 29.2 45 0.00098 40.4 3.3 23 91-114 3-25 (645)
146 PRK06955 biotin--protein ligas 29.2 1E+02 0.0023 33.5 5.8 47 693-743 247-294 (300)
147 KOG0804 Cytoplasmic Zn-finger 29.0 18 0.0004 41.8 -0.0 45 91-141 177-222 (493)
148 KOG4198 RNA-binding Ran Zn-fin 28.9 86 0.0019 34.5 5.0 21 80-100 61-89 (280)
149 PRK03564 formate dehydrogenase 28.5 37 0.0008 37.7 2.2 61 172-232 187-262 (309)
150 COG0068 HypF Hydrogenase matur 28.5 23 0.0005 43.2 0.6 16 154-169 118-133 (750)
151 PF08746 zf-RING-like: RING-li 28.4 14 0.0003 29.4 -0.8 41 92-136 1-43 (43)
152 cd01726 LSm6 The eukaryotic Sm 28.4 2E+02 0.0044 24.5 6.2 34 692-729 7-40 (67)
153 KOG3576 Ovo and related transc 28.1 16 0.00035 38.6 -0.6 16 50-65 113-128 (267)
154 PHA02862 5L protein; Provision 28.1 23 0.0005 35.5 0.5 37 34-74 2-38 (156)
155 PRK05580 primosome assembly pr 28.0 62 0.0013 39.3 4.1 24 259-282 571-594 (679)
156 PRK14639 hypothetical protein; 27.9 1.2E+02 0.0027 29.8 5.5 43 692-737 85-128 (140)
157 COG5219 Uncharacterized conser 27.6 15 0.00033 45.8 -1.0 51 173-231 1470-1521(1525)
158 COG5082 AIR1 Arginine methyltr 27.3 58 0.0013 34.0 3.2 13 33-45 59-71 (190)
159 KOG1044 Actin-binding LIM Zn-f 27.1 21 0.00046 42.5 0.0 8 199-206 241-248 (670)
160 PF06524 NOA36: NOA36 protein; 26.9 32 0.0007 37.5 1.3 25 175-200 128-152 (314)
161 PF13719 zinc_ribbon_5: zinc-r 26.8 37 0.00079 26.1 1.3 27 175-201 5-36 (37)
162 KOG1703 Adaptor protein Enigma 26.7 25 0.00054 40.8 0.5 12 86-97 327-338 (479)
163 PF06003 SMN: Survival motor n 26.6 1.1E+02 0.0025 33.0 5.4 46 693-738 70-116 (264)
164 KOG2041 WD40 repeat protein [G 26.6 41 0.00088 41.3 2.2 49 34-92 1117-1165(1189)
165 PRK04023 DNA polymerase II lar 26.2 54 0.0012 41.6 3.2 7 104-110 651-657 (1121)
166 PHA02825 LAP/PHD finger-like p 26.2 29 0.00064 35.2 0.9 39 30-74 4-44 (162)
167 KOG3612 PHD Zn-finger protein 26.1 43 0.00094 39.7 2.3 47 91-140 62-109 (588)
168 PRK14644 hypothetical protein; 26.0 1E+02 0.0022 30.3 4.5 49 693-742 83-134 (136)
169 KOG3268 Predicted E3 ubiquitin 25.8 23 0.00049 36.7 0.0 21 54-74 182-204 (234)
170 PRK14873 primosome assembly pr 25.6 49 0.0011 40.2 2.7 41 49-112 378-430 (665)
171 PF00641 zf-RanBP: Zn-finger i 25.5 33 0.00072 24.9 0.8 17 82-98 3-27 (30)
172 PLN02915 cellulose synthase A 25.3 64 0.0014 41.1 3.6 53 31-90 12-64 (1044)
173 KOG3053 Uncharacterized conser 25.2 17 0.00038 39.4 -1.0 58 173-233 21-82 (293)
174 PRK14714 DNA polymerase II lar 25.1 64 0.0014 41.9 3.6 21 385-405 970-990 (1337)
175 PRK06009 flgD flagellar basal 25.1 1.7E+02 0.0037 29.3 5.8 40 691-736 93-134 (140)
176 KOG0802 E3 ubiquitin ligase [P 24.9 18 0.00038 42.6 -1.1 49 31-90 288-337 (543)
177 PRK14714 DNA polymerase II lar 24.8 43 0.00093 43.3 2.1 54 160-234 668-721 (1337)
178 PF11717 Tudor-knot: RNA bindi 24.5 1.9E+02 0.0041 23.8 5.2 37 693-730 2-40 (55)
179 KOG1246 DNA-binding protein ju 24.3 52 0.0011 41.2 2.6 47 34-89 155-201 (904)
180 TIGR00008 infA translation ini 24.1 1.2E+02 0.0026 26.9 4.0 25 709-734 7-31 (68)
181 KOG2177 Predicted E3 ubiquitin 24.1 42 0.00092 33.4 1.5 42 34-90 13-54 (386)
182 PHA02929 N1R/p28-like protein; 24.0 28 0.0006 37.3 0.2 52 172-233 174-227 (238)
183 KOG2114 Vacuolar assembly/sort 23.7 37 0.0008 42.2 1.2 39 35-91 841-880 (933)
184 TIGR01562 FdhE formate dehydro 23.3 53 0.0011 36.4 2.2 28 174-201 186-221 (305)
185 PRK14631 hypothetical protein; 23.2 1.8E+02 0.0039 29.8 5.8 54 692-747 114-173 (174)
186 PRK11827 hypothetical protein; 22.8 56 0.0012 28.2 1.8 28 175-202 11-38 (60)
187 KOG1493 Anaphase-promoting com 22.7 9.7 0.00021 34.4 -2.8 52 85-138 22-78 (84)
188 COG5574 PEX10 RING-finger-cont 22.7 30 0.00064 37.7 0.1 30 34-71 215-244 (271)
189 KOG2626 Histone H3 (Lys4) meth 22.6 76 0.0016 37.7 3.3 44 187-231 32-76 (544)
190 PF09297 zf-NADH-PPase: NADH p 22.4 60 0.0013 24.0 1.7 27 173-199 4-30 (32)
191 PF03107 C1_2: C1 domain; Int 22.3 69 0.0015 23.5 2.0 28 36-69 2-30 (30)
192 PLN02638 cellulose synthase A 21.9 83 0.0018 40.3 3.7 51 33-90 16-66 (1079)
193 KOG0317 Predicted E3 ubiquitin 21.6 43 0.00094 36.9 1.1 35 33-75 238-272 (293)
194 PLN02400 cellulose synthase 21.6 89 0.0019 40.1 3.9 51 33-90 35-85 (1085)
195 PF05715 zf-piccolo: Piccolo Z 21.6 40 0.00086 29.2 0.6 54 35-90 3-56 (61)
196 PF10367 Vps39_2: Vacuolar sor 21.4 61 0.0013 28.9 1.9 31 34-70 78-108 (109)
197 KOG0696 Serine/threonine prote 21.2 31 0.00068 40.1 -0.1 95 83-206 56-154 (683)
198 PLN02436 cellulose synthase A 20.9 88 0.0019 40.1 3.6 51 33-90 35-85 (1094)
199 PF14438 SM-ATX: Ataxin 2 SM d 20.6 1.4E+02 0.003 26.0 3.8 40 691-731 8-47 (77)
200 COG5151 SSL1 RNA polymerase II 20.3 30 0.00065 38.6 -0.4 47 173-229 363-417 (421)
No 1
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=100.00 E-value=1.8e-75 Score=649.01 Aligned_cols=591 Identities=40% Similarity=0.684 Sum_probs=496.1
Q ss_pred cccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCCccccccccCCCCCceeCCCCCCcc
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAY 114 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck~C~vC~~sgd~~kLL~Cd~C~raY 114 (754)
.+|.+|...| ......|+.|..|+..||++|+..|......+ ..|.|+.|+.|..|+..+++.++++|+.|+..|
T Consensus 19 ~mc~l~~s~G---~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~--~gWrC~~crvCe~c~~~gD~~kf~~Ck~cDvsy 93 (694)
T KOG4443|consen 19 LMCPLCGSSG---KGRAGRLLACSDCGQKYHPYCVTSWAQHAVLS--GGWRCPSCRVCEACGTTGDPKKFLLCKRCDVSY 93 (694)
T ss_pred hhhhhhcccc---ccccCcchhhhhhcccCCcchhhHHHhHHHhc--CCcccCCceeeeeccccCCcccccccccccccc
Confidence 4666666655 45566899999999999999999998876554 449999999999999999999999999999999
Q ss_pred ccccCCCCCccCCCCCcccCCCcccCCCCCCCCCCCCccccccCccccCCCcccccCCccCccccccccCCCCCCceecc
Q 004423 115 HCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCD 194 (754)
Q Consensus 115 H~~CL~Ppl~~vp~g~W~CP~C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~~lf~KgnyCpVC~K~Y~Dsdgg~MLqCD 194 (754)
|.+|+.|++..++.+.|+|+.|..|..|+...++ +..+|..++..|.+|.. ..|||+|.+.|++.+..+|++|+
T Consensus 94 h~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg--~s~~~~~~~~~~~~c~s----~~~cPvc~~~Y~~~e~~~~~~c~ 167 (694)
T KOG4443|consen 94 HCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPG--LSLDLQEGYLQCAPCAS----LSYCPVCLIVYQDSESLPMVCCS 167 (694)
T ss_pred cccccCCccccccCcccccHHHHhhhhccccccc--cchhhhccCcccccccc----cccCchHHHhhhhccchhhHHHH
Confidence 9999999999999999999999999999998876 67788888999999985 68999999999999999999999
Q ss_pred CcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCCCCCCchHHHHHHhhcccccccHHHHHHHHHhcCCCCcccccc
Q 004423 195 VCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELWRRKDMADKDLIASLRAAAGLPTEDEIFS 274 (754)
Q Consensus 195 sC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~~qIk~lkda~~r~Wrare~~~~dvI~slRaa~GLp~~Eei~~ 274 (754)
.|.+|.|..|+++.++.|.++.++ ..|.|.+||.+.++++++.++..+.|++.......+|..+++..-
T Consensus 168 ~c~rwsh~~c~~~sdd~~~q~~vD--~~~~CS~CR~es~qvKdi~~~vqe~~~~k~~~~~~~~~tls~~a~--------- 236 (694)
T KOG4443|consen 168 ICQRWSHGGCDGISDDKYMQAQVD--LQYKCSTCRGESYQVKDISDALQETWKAKDKPDKILIATLSAQAA--------- 236 (694)
T ss_pred HhcccccCCCCccchHHHHHHhhh--hhcccceeehhhhhhhhHHHHHHhhcchhhccccceeehhhhhhh---------
Confidence 999999999999999999998876 899999999999999999999999999998888888876666644
Q ss_pred CCCCCCcccCCCcchhhhhhhhhcccccCccCCCCCchhhhhccccCccCCCccCCCCCCCCCCCCCCCCCCcccccccC
Q 004423 275 ISPYSDDEENGPVVLKNEFGRSLKLSLKGVVDKSPKKVKEHGKKWLNKKYPRKKGYQMPLNSKPEPDQSFEGYHDVHSYG 354 (754)
Q Consensus 275 ~~p~sdD~~~~p~v~~~~~~~~~k~s~k~~~~k~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (754)
|..+++++ .++.+.+.|+..++++.++....+..+.+.+...+|..+ .+ ..+.|+.+|+
T Consensus 237 ------lq~~~~~~-----~~s~~~k~~~~~~~~~~~s~a~gq~s~~~~~~~~~g~~~-----dp-----~~~~e~~sE~ 295 (694)
T KOG4443|consen 237 ------LQMHHAVI-----GDSSADKAGSSANSGSATSGASGQLSLTTANTPTLGVSL-----DP-----VKLQEVGSER 295 (694)
T ss_pred ------hhhccccc-----cccccccccCcccCCcccccccccCCcccccccccCccc-----ch-----hhhhhccchh
Confidence 34445555 677788999999999999999999999888888888777 22 4566777777
Q ss_pred ----CCCCCCCCCCCCCCCCCCCCcccccccCCCccccCCCCcccccccceeeccCCCccce-eEeecCCCCCCCCCCcc
Q 004423 355 ----NSFGDDTQSPKNEGLDIPSSVAGIVSHTEGVCSISQPGILKHKYVDEVMVSDDDKISR-VKFKTSKPHDLDSGEDD 429 (754)
Q Consensus 355 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 429 (754)
..+..+...+ .++...+.+..|++++-.-+-.+.+..+.+.||+.+|...| ++||++||+++++ ++.
T Consensus 296 ~a~~~v~~e~vv~d-------~t~~~~~~~~~e~~~~p~~r~~~~~~m~~~~~vt~~e~~~r~~r~~Stk~~~~~~-~~~ 367 (694)
T KOG4443|consen 296 KAKLLVKQEAVVKD-------STETPTVNSRAEEIGTPEKRLNANATMTAINQVTSEEKPTRTARIKSTKPPDSDS-ENN 367 (694)
T ss_pred hhhhccchhhhhhc-------cccCcccccchhhccCccccccccceeeeeeccccccccceeeecCCCCCCCcch-hhh
Confidence 3455555555 44445556778999999999999999999999985554445 9999999999999 588
Q ss_pred ccccccccccceeeEEEeeccccccccCCCCCCCcchhcccccccCCCCCChhhhhccccccccccCCCCcCCCCCcccc
Q 004423 430 GKHVSKSKTIKAKKLVINLGARKINVTNSPRSDASSCQREQDLTTSNGIEDPSLQRMNSKFVLDRHDGSSKLGDGDRVDH 509 (754)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (754)
..+++...++++++||||+|+|+||+.++.+.++.+---+-+ + ++..++ |+++|-
T Consensus 368 ~r~a~edn~ll~~~l~~n~st~kl~~~~~t~~~v~~~~~~a~-----l----~~~~l~----------------~~~~~s 422 (694)
T KOG4443|consen 368 LRSAAEDNALLAKKLVINSSSRKLNVISSTSAHVGSASSSAP-----L----SQRKLI----------------GVRAPS 422 (694)
T ss_pred hhhccchhhHHhhhcccccCccccccccccccccccccccCh-----h----hHHHhc----------------cCcCcc
Confidence 888999999999999999999999999999998874322211 1 222222 488888
Q ss_pred ccccccceecccCCceeeeecccccccccCcccCCCCCCCCCCccccccccccchhhhhhhhcccccceeEEecCccccc
Q 004423 510 SSQSRGLKIAGRGGNVIKFGRVRQEVSDSNTKVSRGSSADEHEPEHMHVLSGKRNIDRSRAAVSRVGEVAALRGDRKQLE 589 (754)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (754)
+++.|++..+ |+.+.- +.++.++.++....
T Consensus 423 ~~k~rsle~e---------gs~~~~-----------------------------------------~~v~~~~~a~~ssg 452 (694)
T KOG4443|consen 423 MGKVRSLEDE---------GSRGVI-----------------------------------------GPVTTATAAAGSSG 452 (694)
T ss_pred hhhhhhhhhh---------cccCCC-----------------------------------------CCcCCcCccccccc
Confidence 8888888662 222221 12233333332222
Q ss_pred cCCCccccCCCCcccccCCCCCCCCceeeeecCCCccCCCCCcCchHH--HhhhhhcccccCCCCCccccccccccc-hh
Q 004423 590 SRPNASRESNDDTSVLQSLPKDSKPPLRLKFRKPNLENQNSQVSQPEE--EKSLIKGQRSKRKRPSPFTEKTLFNED-ED 666 (754)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~k~~~~~~~~~~~~~~~~--~~~~~~gqrskrkr~~~~~~~~~~~~~-~~ 666 (754)
.+.+.. ...+.+-+.+..++.+|+|+++|++|+.+.|++..++..| .+...+|+|+|+||+++..+++.++++ |.
T Consensus 453 ss~~~~--~s~t~g~~~s~~~~~~~~l~~a~a~~~s~~~~s~~~v~~~~E~~~d~~~a~~~n~~~n~~~~~~~~~~~~q~ 530 (694)
T KOG4443|consen 453 SSGDVK--TSTTPGTVASGQKSQRPLLKSAIAKPNSAVQISEPGVGSEAEQKSDGKGARSKNKRQNQAPPPPPPPEDQQQ 530 (694)
T ss_pred CCCCCC--CCCCCCcCCcchhhhhhhhhhhhhcCCcccccccccccccccccCCcccccccccccCCCCCCCCCcchhhh
Confidence 222222 2233444668899999999999999999999987776655 559999999999999999999999999 99
Q ss_pred hhhhhhh-hhhhhhhhhHHHHHHhccccccceEEEEecCCCceeeeeeEEee--cCeeEEEEEecCCcccceecCceeeE
Q 004423 667 AAQSNQD-SLMSEIMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTV--EGTSTLSITLDDSRVKTLELGKQGVR 743 (754)
Q Consensus 667 ~~~~~~~-~~~~~~~d~~~il~~lg~da~~krvev~~~sd~~w~~g~v~~~~--~~~~~~~v~~d~g~~~~~~~gk~~vr 743 (754)
...+++| ++.||||||+|||++||+||+|||+|||-.++|+|.+|+|+.|+ .+||.|.|++|+|.++|+++|+|+||
T Consensus 531 l~~s~~d~~~~d~~~~a~~~~~~~g~~~~~~~t~vhs~~~ns~~~g~vt~~~s~~~~s~~~~~~~~~~v~~~~~~~~~v~ 610 (694)
T KOG4443|consen 531 LQPSPHDVSRLDEMVDAEWILKKLGKDAKTKRTEVHSKSMNSWPKGNVTIVISTGQTSPLEVQLKPGAVKTVELGKQGVR 610 (694)
T ss_pred cCCCHHHHHHHHhhhccccccccCCCCCCcceeccccCCCCCCCCccceeeeccCCcccceeeccccccccccccccccc
Confidence 9999999 79999999999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred eeeccccccC
Q 004423 744 FVPQKQKRSM 753 (754)
Q Consensus 744 ~~~~~~k~~~ 753 (754)
|+|++|||.+
T Consensus 611 f~pe~~k~~~ 620 (694)
T KOG4443|consen 611 FLPEKQKRVR 620 (694)
T ss_pred cChhhhhccc
Confidence 9999999876
No 2
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.64 E-value=2.9e-17 Score=169.95 Aligned_cols=108 Identities=28% Similarity=0.734 Sum_probs=97.4
Q ss_pred CCccccccccccccc--cCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCCccccccccCCCCCceeC
Q 004423 30 QSNTNVMCRLCFVGE--NEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFC 107 (754)
Q Consensus 30 ~s~~d~~C~vC~~gG--~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck~C~vC~~sgd~~kLL~C 107 (754)
-..+..+|..|.+.. +.....+++|+.|..|+++-|+.||.....|...+..+.|+|.+|++|.+|+.+.+++.+|||
T Consensus 220 ~a~Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsenddqllfc 299 (336)
T KOG1244|consen 220 IAQPNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSENDDQLLFC 299 (336)
T ss_pred cccCCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCCceeEee
Confidence 356778999999764 234466789999999999999999999988888888999999999999999999999999999
Q ss_pred CCCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 108 RRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 108 d~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
+.|+++||++||.|++.+.|.|.|.|..|.
T Consensus 300 ddcdrgyhmyclsppm~eppegswsc~KOG 329 (336)
T KOG1244|consen 300 DDCDRGYHMYCLSPPMVEPPEGSWSCHLCL 329 (336)
T ss_pred cccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence 999999999999999999999999998774
No 3
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.49 E-value=4.9e-15 Score=154.39 Aligned_cols=100 Identities=22% Similarity=0.530 Sum_probs=90.4
Q ss_pred ccccccccccccc-CCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCCccccccccCCCCCceeCCCCC
Q 004423 33 TNVMCRLCFVGEN-EGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCD 111 (754)
Q Consensus 33 ~d~~C~vC~~gG~-~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck~C~vC~~sgd~~kLL~Cd~C~ 111 (754)
+...|.+|..+.. .-....+.||+|..|-..||++|+.++.++...+..+.|.|.+|+.|.+|+.+..++.++||+.|+
T Consensus 257 ~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~CD 336 (381)
T KOG1512|consen 257 RRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIESEHLFCDVCD 336 (381)
T ss_pred chhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccchheecccccc
Confidence 4568999998753 334567899999999999999999999988888888999999999999999999999999999999
Q ss_pred CccccccCCCCCccCCCCCcccC
Q 004423 112 AAYHCYCQHPPHKNVSSGPYLCP 134 (754)
Q Consensus 112 raYH~~CL~Ppl~~vp~g~W~CP 134 (754)
++||++|++ +..+|.|.|.|.
T Consensus 337 RG~HT~CVG--L~~lP~G~WICD 357 (381)
T KOG1512|consen 337 RGPHTLCVG--LQDLPRGEWICD 357 (381)
T ss_pred CCCCccccc--cccccCccchhh
Confidence 999999999 678999999997
No 4
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=99.33 E-value=2.1e-13 Score=155.52 Aligned_cols=249 Identities=18% Similarity=0.266 Sum_probs=157.2
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC-----ccccccccCCCCCceeC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR-----ICEICRRTGDPNKFMFC 107 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck-----~C~vC~~sgd~~kLL~C 107 (754)
.+.+|.+|..+. ++..++|++|+.|.--.|..|.++-. ++.+.|.|..|. -|.+|=..|.. |---
T Consensus 270 edviCDvCrspD---~e~~neMVfCd~Cn~cVHqaCyGIle-----~p~gpWlCr~Calg~~ppCvLCPkkGGa--mK~~ 339 (893)
T KOG0954|consen 270 EDVICDVCRSPD---SEEANEMVFCDKCNICVHQACYGILE-----VPEGPWLCRTCALGIEPPCVLCPKKGGA--MKPT 339 (893)
T ss_pred ccceeceecCCC---ccccceeEEeccchhHHHHhhhceee-----cCCCCeeehhccccCCCCeeeccccCCc--cccc
Confidence 456999999864 45677999999999999999999843 355899999996 68888554421 1111
Q ss_pred CCCCCccccccCCCCCccCCCCCcccCCCcccCCCCCCCCCCCCccccccCccccCCCcccccCCccCccccccccCCCC
Q 004423 108 RRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSES 187 (754)
Q Consensus 108 d~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~~lf~KgnyCpVC~K~Y~Dsdg 187 (754)
..=-.|-|.+|.- -+|.-.+-|+. .-.+.+....+...||..-+ -+|.. -.
T Consensus 340 ~sgT~wAHvsCAL----wIPEVsie~~e----kmePItkfs~IpesRwslvC----------------~LCk~-----k~ 390 (893)
T KOG0954|consen 340 KSGTKWAHVSCAL----WIPEVSIECPE----KMEPITKFSHIPESRWSLVC----------------NLCKV-----KS 390 (893)
T ss_pred CCCCeeeEeeeee----ccceeeccCHh----hcCcccccCCCcHHHHHHHH----------------HHhcc-----cC
Confidence 1112788999964 12222333332 11223334456677887633 33332 13
Q ss_pred CCceecc--CcCCeecccCCCCChHHHhhhccC---CCCceeCCCCCCCCCCCCchHHHHHHhhcccccc-cH-HHHH--
Q 004423 188 TPMVCCD--VCQRWVHCQCDGISDEKYLQFQVD---GNLQYRCPTCRGECYQVRDLEDAVRELWRRKDMA-DK-DLIA-- 258 (754)
Q Consensus 188 g~MLqCD--sC~~wFH~eCd~LsdE~ye~~~~d---~d~~Y~CptCr~~~~qIk~lkda~~r~Wrare~~-~~-dvI~-- 258 (754)
+-.|+|. .|...||..|..-.--+...+... -...-+|+.|-.... -+.+.. ..--|+..+. +. .++.
T Consensus 391 GACIqCs~k~C~t~fHv~CA~~aG~~~~~~~~~~D~v~~~s~c~khs~~~~-~~s~g~--~~e~p~p~~~~p~~~~~e~~ 467 (893)
T KOG0954|consen 391 GACIQCSNKTCRTAFHVTCAFEAGLEMKTILKENDEVKFKSYCSKHSDHRE-GKSLGN--EAESPHPRCHLPEQSVGEGH 467 (893)
T ss_pred cceEEecccchhhhccchhhhhcCCeeeeeeccCCchhheeeccccccccc-cccccc--ccCCCCccccChhhhhhhhh
Confidence 4457775 699999999976321111122111 124567777765542 111221 1112232322 22 2222
Q ss_pred -HHHHhcCCCCccccccCCCCCCcccCC---CcchhhhhhhhhcccccCccCCCCCchhhhhccccCcc
Q 004423 259 -SLRAAAGLPTEDEIFSISPYSDDEENG---PVVLKNEFGRSLKLSLKGVVDKSPKKVKEHGKKWLNKK 323 (754)
Q Consensus 259 -slRaa~GLp~~Eei~~~~p~sdD~~~~---p~v~~~~~~~~~k~s~k~~~~k~~~~~k~~~~~~~~~~ 323 (754)
+--+++-|...|+.|+.-..-.|.+.. |...++++|||||+++|+++|+++.++|+++.....|+
T Consensus 468 ~~s~r~q~l~~~e~ef~~~v~~~diae~l~~~e~~vs~iynywklkrks~~n~~lippk~d~~~~i~kk 536 (893)
T KOG0954|consen 468 RSSDRAQKLQELEGEFYDIVRNEDIAELLSMPEFAVSAIYNYWKLKRKSRFNKELIPPKSDEVGLIAKK 536 (893)
T ss_pred hhhHHHHHHhhcchhHhhhhhHHHHHHHhcCchHHHHHHHHHHHHhhhccCCCcCCCCcchhccchhhH
Confidence 233455677888899988887777633 88899999999999999999999999999999877665
No 5
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=98.70 E-value=6.9e-09 Score=118.57 Aligned_cols=136 Identities=20% Similarity=0.431 Sum_probs=88.1
Q ss_pred cccccccC--CCCCceeCC--CCCCccccccCCCCCccCCCCCcccCCC--------cccCCCCCCCC--CCCCcccccc
Q 004423 92 CEICRRTG--DPNKFMFCR--RCDAAYHCYCQHPPHKNVSSGPYLCPKH--------TKCHSCGSNVP--GNGLSVRWFL 157 (754)
Q Consensus 92 C~vC~~sg--d~~kLL~Cd--~C~raYH~~CL~Ppl~~vp~g~W~CP~C--------~~C~~Cg~~~p--gk~~s~RW~~ 157 (754)
|.+|.+-. .++.++.|| .|-.+.|..|++ +.++|.|.|||..| ++|..|..+.- .+..+.-|.+
T Consensus 8 CCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAH 85 (900)
T KOG0956|consen 8 CCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAH 85 (900)
T ss_pred eeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceE
Confidence 55887543 345899999 799999999999 78899999999999 46888986542 1223445755
Q ss_pred CccccCCCccc--cc-----------------CCccCccccccccCCC--CCCceecc--CcCCeecccCCCCChHHHhh
Q 004423 158 GYTCCDACGRL--FV-----------------KGNYCPVCLKVYRDSE--STPMVCCD--VCQRWVHCQCDGISDEKYLQ 214 (754)
Q Consensus 158 ~~slC~~C~~l--f~-----------------KgnyCpVC~K~Y~Dsd--gg~MLqCD--sC~~wFH~eCd~LsdE~ye~ 214 (754)
.+|.--... |- --..|+||...-+.+. .+-.+.|. .|.+.||..|....-..-++
T Consensus 86 --VVCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE 163 (900)
T KOG0956|consen 86 --VVCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEE 163 (900)
T ss_pred --EEEEeeccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceec
Confidence 233211100 00 1123999987654433 35567784 59999999997632111111
Q ss_pred hccCCCCceeCCCCCCC
Q 004423 215 FQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 215 ~~~d~d~~Y~CptCr~~ 231 (754)
-+..-+.+-||-+|+.+
T Consensus 164 ~gn~~dNVKYCGYCk~H 180 (900)
T KOG0956|consen 164 EGNISDNVKYCGYCKYH 180 (900)
T ss_pred cccccccceechhHHHH
Confidence 12223568999999966
No 6
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.64 E-value=1.6e-08 Score=115.43 Aligned_cols=47 Identities=30% Similarity=0.872 Sum_probs=43.1
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCC--ccCCCCCcccCCCc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPH--KNVSSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl--~~vp~g~W~CP~C~ 137 (754)
||..|+..+.-..+++|+.|++.||+.||.||+ ..+|.+.|+|+.|.
T Consensus 255 fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~ 303 (613)
T KOG4299|consen 255 FCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECK 303 (613)
T ss_pred HHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCe
Confidence 899999998777789999999999999999995 56999999999996
No 7
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.54 E-value=1.6e-08 Score=116.71 Aligned_cols=47 Identities=23% Similarity=0.770 Sum_probs=44.5
Q ss_pred ccccccccCCCCCceeCCCCCCc-cccccCCCCCccCCCCCcccCCCc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAA-YHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~ra-YH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
-|.+|.....++.||+|+.|+.+ ||.+||+|++.++|.+.|||++|.
T Consensus 217 ~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 217 KCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred cceeeccCChHHhheeecccccceeeccccCcccccccccceecCcch
Confidence 79999999888899999999998 999999999999999999999986
No 8
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.50 E-value=1.2e-07 Score=110.78 Aligned_cols=75 Identities=33% Similarity=0.909 Sum_probs=65.0
Q ss_pred cCCCccchhccCCCccccccCCCCCccCCCCC-------------------ccccccccCCCCCceeCCCCCCccccccC
Q 004423 59 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR-------------------ICEICRRTGDPNKFMFCRRCDAAYHCYCQ 119 (754)
Q Consensus 59 ~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck-------------------~C~vC~~sgd~~kLL~Cd~C~raYH~~CL 119 (754)
.|.+.||..|+.+..... +...|.|+.|- .|.+|+..+ .+++|+.|+.+||.+|+
T Consensus 1 ~~~r~~~~~~~~p~~~~~---~~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~~~g---~~l~c~tC~~s~h~~cl 74 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEE---PEMDPKCPGCESSSAQVEAKDDDWDDAEQEACRICADGG---ELLWCDTCPASFHASCL 74 (696)
T ss_pred CCCcccCcCCCCcccccC---CcCCccCcchhhcccccccccCCcchhhhhhhhhhcCCC---cEEEeccccHHHHHHcc
Confidence 489999999999765432 26899999985 899999888 89999999999999999
Q ss_pred CCCCccCCCCCcccCCCcccC
Q 004423 120 HPPHKNVSSGPYLCPKHTKCH 140 (754)
Q Consensus 120 ~Ppl~~vp~g~W~CP~C~~C~ 140 (754)
++++...|.+.|.|++| .|.
T Consensus 75 ~~pl~~~p~~~~~c~Rc-~~p 94 (696)
T KOG0383|consen 75 GPPLTPQPNGEFICPRC-FCP 94 (696)
T ss_pred CCCCCcCCccceeeeee-ccC
Confidence 99999999888999988 444
No 9
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.39 E-value=6e-08 Score=77.17 Aligned_cols=48 Identities=31% Similarity=0.863 Sum_probs=40.5
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCc--cCCCCCcccCCCcc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHK--NVSSGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~--~vp~g~W~CP~C~~ 138 (754)
+|.+|+.......||.|+.|++|||..|++++.. .++...|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5788898777789999999999999999998766 34456999999864
No 10
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.34 E-value=2.7e-07 Score=105.56 Aligned_cols=51 Identities=24% Similarity=0.670 Sum_probs=42.2
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
+++|..|.+.|. -.++|+|++|+++||+.||.|+.+.. .++.+.|+|+.|.
T Consensus 253 ~~fCsaCn~~~~-----F~~~i~CD~Cp~sFH~~CLePPl~~e-niP~g~W~C~ec~ 303 (613)
T KOG4299|consen 253 EDFCSACNGSGL-----FNDIICCDGCPRSFHQTCLEPPLEPE-NIPPGSWFCPECK 303 (613)
T ss_pred HHHHHHhCCccc-----cccceeecCCchHHHHhhcCCCCCcc-cCCCCccccCCCe
Confidence 459999998773 14679999999999999999986543 3467899999997
No 11
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.30 E-value=2.4e-07 Score=103.26 Aligned_cols=210 Identities=20% Similarity=0.313 Sum_probs=121.3
Q ss_pred CCccccccccCCC--CCceeCCCCCCccccccCCCCCccCCCCCcccCCCcc-------cCCCCCCCCC--CCCcccccc
Q 004423 89 CRICEICRRTGDP--NKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK-------CHSCGSNVPG--NGLSVRWFL 157 (754)
Q Consensus 89 Ck~C~vC~~sgd~--~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~-------C~~Cg~~~pg--k~~s~RW~~ 157 (754)
|..|.+|.....+ +.+++|+.|..+.|..|++ ..-+|.|.|+|..|.. |..|....-. .....||.+
T Consensus 193 d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW~H 270 (669)
T COG5141 193 DDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRWGH 270 (669)
T ss_pred hhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCchHh
Confidence 4566777765543 3689999999999999999 5678999999999953 7788765421 224567865
Q ss_pred CccccCCCccc--cc-----------------CC-ccCccccccccCCCCCCceeccC--cCCeecccCCCCChHHHhhh
Q 004423 158 GYTCCDACGRL--FV-----------------KG-NYCPVCLKVYRDSESTPMVCCDV--CQRWVHCQCDGISDEKYLQF 215 (754)
Q Consensus 158 ~~slC~~C~~l--f~-----------------Kg-nyCpVC~K~Y~Dsdgg~MLqCDs--C~~wFH~eCd~LsdE~ye~~ 215 (754)
..|..-... |. .| .-|.+|.+. ++..|||.. |-++||..|..-. -|+..
T Consensus 271 --~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~-----~GtcIqCs~~nC~~aYHVtCArra--g~f~~ 341 (669)
T COG5141 271 --VICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEF-----GGTCIQCSYFNCTRAYHVTCARRA--GYFDL 341 (669)
T ss_pred --HhHHHhcchhccccccccchhhhhcccchhhHhheeeEEccc-----Ccceeeecccchhhhhhhhhhhhc--chhhh
Confidence 223110000 00 11 129999875 567899975 9999999997521 11111
Q ss_pred -ccCCCCceeC----CCCCCCCCCCCchHHHHHHhhccccc----ccHHHHHHHHHhc-------CCCCccccccCCCC-
Q 004423 216 -QVDGNLQYRC----PTCRGECYQVRDLEDAVRELWRRKDM----ADKDLIASLRAAA-------GLPTEDEIFSISPY- 278 (754)
Q Consensus 216 -~~d~d~~Y~C----ptCr~~~~qIk~lkda~~r~Wrare~----~~~dvI~slRaa~-------GLp~~Eei~~~~p~- 278 (754)
-...++.++| +.|+.+... -|..-..-|+.+.+.. ++-+++.+.|+.. .++|...++.++..
T Consensus 342 ~~~s~n~~s~~id~e~~c~kh~p~-gy~~~~~~r~f~~~kl~~~~~~T~ip~~~~a~~~~~~~f~k~~wk~pp~~p~V~~ 420 (669)
T COG5141 342 NIYSHNGISYCIDHEPLCRKHYPL-GYGRMNGLRYFGYEKLRYKNPPTAIPRKVRAARPRATLFMKLCWKQPPATPSVLS 420 (669)
T ss_pred hhhcccccceeecchhhhcCCCCc-chhccchhccccHHHHhccCCccccchhhhccCCchhhhhcccccCCCCCHHHHH
Confidence 0112445666 567755332 1211112223333222 2224444444332 33455544333322
Q ss_pred -------CCcccCCCcchhhhhhhhhcccccCccCCCCC
Q 004423 279 -------SDDEENGPVVLKNEFGRSLKLSLKGVVDKSPK 310 (754)
Q Consensus 279 -------sdD~~~~p~v~~~~~~~~~k~s~k~~~~k~~~ 310 (754)
+.-....|.+.+=++-+||.++||+--.-|+.
T Consensus 421 ~V~~~~l~~~~~~d~p~~ifdIckyw~mKR~~~~g~PL~ 459 (669)
T COG5141 421 RVEACDLKEKDRQDLPVNIFDICKYWEMKRKSEIGGPLV 459 (669)
T ss_pred HHHHHhhhhccccCCCchhhHHHHHHHHhhhhcCCCCce
Confidence 11123447788888899999999977666655
No 12
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.28 E-value=6.5e-07 Score=100.38 Aligned_cols=134 Identities=22% Similarity=0.306 Sum_probs=78.0
Q ss_pred ccccccc--cCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCcccCC--CC-CCCCCCCCccccccCccccCCC
Q 004423 91 ICEICRR--TGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHS--CG-SNVPGNGLSVRWFLGYTCCDAC 165 (754)
Q Consensus 91 ~C~vC~~--sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~C~~--Cg-~~~pgk~~s~RW~~~~slC~~C 165 (754)
.|-+|.. ...++.+..|.+|..+||..|--+... ..+.|.+..|+.=.. -| ..+.+. ..+-...|..=..-
T Consensus 85 ~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~--~~~~~~~~~c~~~~~~~~g~a~K~g~--~a~~~l~y~~~~l~ 160 (464)
T KOG4323|consen 85 NPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFP--SLDIGESTECVFPIFSQEGGALKKGR--LARPSLPYPEASLD 160 (464)
T ss_pred CCcccccccccCchhhhhhhhhccCcccccCccCcC--cCCccccccccccccccccccccccc--cccccccCcccccc
Confidence 3445543 223446899999999999999886433 345666666543111 11 111111 11100001100000
Q ss_pred --cccccCCccCccccccccCCCCCCceeccCcCCeecccCCCC--ChHHHhhhccCCCCceeCCCCCCCCCC
Q 004423 166 --GRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI--SDEKYLQFQVDGNLQYRCPTCRGECYQ 234 (754)
Q Consensus 166 --~~lf~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~L--sdE~ye~~~~d~d~~Y~CptCr~~~~q 234 (754)
...++..+ |.||++.-..... .||+|+.|..|||..|-.. .+++ ..++++.|+|.+|.++...
T Consensus 161 wD~~~~~n~q-c~vC~~g~~~~~N-rmlqC~~C~~~fHq~Chqp~i~~~l----~~D~~~~w~C~~C~~~~~~ 227 (464)
T KOG4323|consen 161 WDSGHKVNLQ-CSVCYCGGPGAGN-RMLQCDKCRQWYHQACHQPLIKDEL----AGDPFYEWFCDVCNRGPKK 227 (464)
T ss_pred cCccccccce-eeeeecCCcCccc-eeeeecccccHHHHHhccCCCCHhh----ccCccceEeehhhccchhh
Confidence 01112222 8889877666566 9999999999999999874 3333 2457899999999987543
No 13
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.22 E-value=9.3e-07 Score=87.61 Aligned_cols=86 Identities=26% Similarity=0.668 Sum_probs=63.7
Q ss_pred ccccccccccCCccCCCceEEeCcCCCccchhccCCCcccccc---CC--CCCccCCCCC--------------cccccc
Q 004423 36 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDL---FH--WSSWKCPSCR--------------ICEICR 96 (754)
Q Consensus 36 ~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~---v~--~~~W~Cp~Ck--------------~C~vC~ 96 (754)
+|.+|...|.. .....||+|.+|..+||..||++......+ +. ..-.+|..|. .|..|+
T Consensus 1 ~C~~C~~~g~~--~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~ 78 (175)
T PF15446_consen 1 TCDTCGYEGDD--RNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCK 78 (175)
T ss_pred CcccccCCCCC--ccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccC
Confidence 48888764422 233499999999999999999997542222 12 2356799996 899998
Q ss_pred ccCC--------------------------------------CCCceeCCCCCCccccccCCCCC
Q 004423 97 RTGD--------------------------------------PNKFMFCRRCDAAYHCYCQHPPH 123 (754)
Q Consensus 97 ~sgd--------------------------------------~~kLL~Cd~C~raYH~~CL~Ppl 123 (754)
..|. ++.|++|..|.++||+..|++..
T Consensus 79 ~~G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 79 KPGPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred CCCCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence 7653 12488999999999999999753
No 14
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.18 E-value=1e-06 Score=106.80 Aligned_cols=49 Identities=22% Similarity=0.678 Sum_probs=39.8
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
+.+|.||.++.. ...+.+|+|+.|+-++|.+|.+.+ .++.+.|.|..|-
T Consensus 219 D~~C~iC~~~~~---~n~n~ivfCD~Cnl~VHq~Cygi~-----~ipeg~WlCr~Cl 267 (1051)
T KOG0955|consen 219 DAVCCICLDGEC---QNSNVIVFCDGCNLAVHQECYGIP-----FIPEGQWLCRRCL 267 (1051)
T ss_pred Cccceeeccccc---CCCceEEEcCCCcchhhhhccCCC-----CCCCCcEeehhhc
Confidence 469999999763 234689999999999999999953 3456999999883
No 16
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.07 E-value=1.6e-06 Score=97.29 Aligned_cols=97 Identities=19% Similarity=0.429 Sum_probs=68.1
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC----------------------
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR---------------------- 90 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck---------------------- 90 (754)
.+..|.+|..... ....++..|..|.+.||..|..+.... ...|.+.+|.
T Consensus 82 ~e~~~nv~~s~~~---~p~~e~~~~~r~~~~~~q~~~i~~~~~-----~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~ 153 (464)
T KOG4323|consen 82 SELNPNVLTSETV---LPENEKVICGRCKSGYHQGCNIPRFPS-----LDIGESTECVFPIFSQEGGALKKGRLARPSLP 153 (464)
T ss_pred cccCCcccccccc---cCchhhhhhhhhccCcccccCccCcCc-----CCcccccccccccccccccccccccccccccc
Confidence 3458888887542 224589999999999999998764321 1222222222
Q ss_pred ----------------cccc--ccccCCCCCceeCCCCCCccccccCCCCCcc----CCCCCcccCCCc
Q 004423 91 ----------------ICEI--CRRTGDPNKFMFCRRCDAAYHCYCQHPPHKN----VSSGPYLCPKHT 137 (754)
Q Consensus 91 ----------------~C~v--C~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~----vp~g~W~CP~C~ 137 (754)
.|.+ |+.++..+.||+|+.|..|||..|..|+... -+...|+|..|.
T Consensus 154 y~~~~l~wD~~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~ 222 (464)
T KOG4323|consen 154 YPEASLDWDSGHKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCN 222 (464)
T ss_pred CcccccccCccccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhc
Confidence 3444 5566777799999999999999999987653 356789998875
No 17
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.07 E-value=8.1e-07 Score=70.68 Aligned_cols=49 Identities=29% Similarity=0.868 Sum_probs=38.0
Q ss_pred ccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 36 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 36 ~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
+|.+|+..+. .++||.|+.|.++||..|++++...... ....|+|+.|.
T Consensus 1 ~C~vC~~~~~-----~~~~i~C~~C~~~~H~~C~~~~~~~~~~-~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDD-----DGDMIQCDSCNRWYHQECVGPPEKAEEI-PSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCT-----TSSEEEBSTTSCEEETTTSTSSHSHHSH-HSSSBSSHHHH
T ss_pred eCcCCCCcCC-----CCCeEEcCCCChhhCcccCCCChhhccC-CCCcEECcCCc
Confidence 5888988442 3599999999999999999998664332 22489999885
No 18
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.92 E-value=3.2e-06 Score=89.46 Aligned_cols=82 Identities=27% Similarity=0.595 Sum_probs=62.6
Q ss_pred CCCceeCCCCCCccccccCCCCCc---cCCCCCcccCCCcccCCCCCCCCCCCCccccccCccccCCCcccccCCccCcc
Q 004423 101 PNKFMFCRRCDAAYHCYCQHPPHK---NVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPV 177 (754)
Q Consensus 101 ~~kLL~Cd~C~raYH~~CL~Ppl~---~vp~g~W~CP~C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~~lf~KgnyCpV 177 (754)
.+.|+.|..|...||++|+.-+.. .+-...|.|..|..|.-|+...
T Consensus 276 ~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~------------------------------- 324 (381)
T KOG1512|consen 276 RNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPV------------------------------- 324 (381)
T ss_pred hccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcc-------------------------------
Confidence 447999999999999999984433 2457899999998777666421
Q ss_pred ccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCC-CCC
Q 004423 178 CLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCP-TCR 229 (754)
Q Consensus 178 C~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~Cp-tCr 229 (754)
-...|+.||.|++-||.-|+++.. -+.+.|+|- .|.
T Consensus 325 --------~E~E~~FCD~CDRG~HT~CVGL~~--------lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 325 --------IESEHLFCDVCDRGPHTLCVGLQD--------LPRGEWICDMRCR 361 (381)
T ss_pred --------cchheeccccccCCCCcccccccc--------ccCccchhhhHHH
Confidence 134678999999999999999743 257899996 354
No 20
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.90 E-value=3.1e-06 Score=97.47 Aligned_cols=90 Identities=28% Similarity=0.663 Sum_probs=63.7
Q ss_pred CCccCCCCCccccccccCC--CCCceeCCCCCCccccccCCCCCcc-CCCCCcccCCCcccCCCCCCCCCCCCccccccC
Q 004423 82 SSWKCPSCRICEICRRTGD--PNKFMFCRRCDAAYHCYCQHPPHKN-VSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLG 158 (754)
Q Consensus 82 ~~W~Cp~Ck~C~vC~~sgd--~~kLL~Cd~C~raYH~~CL~Ppl~~-vp~g~W~CP~C~~C~~Cg~~~pgk~~s~RW~~~ 158 (754)
..-.|..|.+|.+|...|. ...|+.|..|...||.+|+..-+.. +-.+.|.||.|+.|..|+.... | ..
T Consensus 11 ~~~~~~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD-------~-~k 82 (694)
T KOG4443|consen 11 SDKAIIVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGD-------P-KK 82 (694)
T ss_pred cchhhhhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCC-------c-cc
Confidence 3445667889999987664 3469999999999999999853332 2234599999999999994321 1 14
Q ss_pred ccccCCCcccccCCccCccccccccC
Q 004423 159 YTCCDACGRLFVKGNYCPVCLKVYRD 184 (754)
Q Consensus 159 ~slC~~C~~lf~KgnyCpVC~K~Y~D 184 (754)
+.+|..|.. .|...|.+...+
T Consensus 83 f~~Ck~cDv-----syh~yc~~P~~~ 103 (694)
T KOG4443|consen 83 FLLCKRCDV-----SYHCYCQKPPND 103 (694)
T ss_pred ccccccccc-----cccccccCCccc
Confidence 677888864 455567766543
No 21
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.89 E-value=3.2e-06 Score=89.04 Aligned_cols=90 Identities=23% Similarity=0.506 Sum_probs=68.2
Q ss_pred ccCCCCCceeCCCCCCccccccCCCCCc---cCCCCCcccCCCcccCCCCCCCCCCCCccccccCccccCCCcccccCCc
Q 004423 97 RTGDPNKFMFCRRCDAAYHCYCQHPPHK---NVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGN 173 (754)
Q Consensus 97 ~sgd~~kLL~Cd~C~raYH~~CL~Ppl~---~vp~g~W~CP~C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~~lf~Kgn 173 (754)
+.+-++.++.|..|++.=|+.||+-... .+-...|.|-.|..|..||...
T Consensus 239 kt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtse--------------------------- 291 (336)
T KOG1244|consen 239 KTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSE--------------------------- 291 (336)
T ss_pred ccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcC---------------------------
Confidence 4556678999999999999999984332 2457899999988777666532
Q ss_pred cCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 174 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 174 yCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
...++|.||.|++-||..|+.+.+ ..++++.|.|-.|...
T Consensus 292 ------------nddqllfcddcdrgyhmyclsppm------~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 292 ------------NDDQLLFCDDCDRGYHMYCLSPPM------VEPPEGSWSCHLCLEE 331 (336)
T ss_pred ------------CCceeEeecccCCceeeEecCCCc------CCCCCCchhHHHHHHH
Confidence 124688999999999999987532 2356899999999643
No 22
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=97.80 E-value=1e-05 Score=93.40 Aligned_cols=53 Identities=25% Similarity=0.687 Sum_probs=40.9
Q ss_pred ccccccccccCCccCCCceEEeC--cCCCccchhccCCCccccccCCCCCccCCCCC--------cccccc
Q 004423 36 MCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR--------ICEICR 96 (754)
Q Consensus 36 ~C~vC~~gG~~gs~~~eeLL~Cd--~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck--------~C~vC~ 96 (754)
=|-||.+. .|+.+ +.||+|| .|--+.|..|.++. .++.+.|+|..|. .|.+|=
T Consensus 7 GCCVCSDE--rGWae-NPLVYCDG~nCsVAVHQaCYGIv-----qVPtGpWfCrKCesqeraarvrCeLCP 69 (900)
T KOG0956|consen 7 GCCVCSDE--RGWAE-NPLVYCDGHNCSVAVHQACYGIV-----QVPTGPWFCRKCESQERAARVRCELCP 69 (900)
T ss_pred ceeeecCc--CCCcc-CceeeecCCCceeeeehhcceeE-----ecCCCchhhhhhhhhhhhccceeeccc
Confidence 47788763 23322 4899999 99999999999983 4567999999996 677774
No 23
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.64 E-value=2.5e-05 Score=91.85 Aligned_cols=47 Identities=28% Similarity=0.712 Sum_probs=39.7
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
....|.+|..+| .+|+|+.|..+||.+|++++....+ .+.|.|++|.
T Consensus 46 ~~e~c~ic~~~g--------~~l~c~tC~~s~h~~cl~~pl~~~p---~~~~~c~Rc~ 92 (696)
T KOG0383|consen 46 EQEACRICADGG--------ELLWCDTCPASFHASCLGPPLTPQP---NGEFICPRCF 92 (696)
T ss_pred hhhhhhhhcCCC--------cEEEeccccHHHHHHccCCCCCcCC---ccceeeeeec
Confidence 446999999988 8999999999999999999765443 2559999995
No 24
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.51 E-value=3.6e-05 Score=81.90 Aligned_cols=47 Identities=28% Similarity=0.651 Sum_probs=38.0
Q ss_pred CCccCCCCCccccccccCCCCCceeCCC--CC-CccccccCCCCCccCCCCCcccCCCcc
Q 004423 82 SSWKCPSCRICEICRRTGDPNKFMFCRR--CD-AAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (754)
Q Consensus 82 ~~W~Cp~Ck~C~vC~~sgd~~kLL~Cd~--C~-raYH~~CL~Ppl~~vp~g~W~CP~C~~ 138 (754)
..++| +|. |...| .|+-|+. |+ .|||..|++ +...|.+.||||.|..
T Consensus 218 e~~yC----~Cn-qvsyg---~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 218 EPTYC----ICN-QVSYG---KMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKA 267 (274)
T ss_pred CCEEE----Eec-ccccc---cccccCCCCCCcceEEEeccc--cccCCCCcccchhhhh
Confidence 45554 444 56666 8999997 99 999999999 6788999999999864
No 25
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.33 E-value=3.9e-05 Score=92.42 Aligned_cols=93 Identities=18% Similarity=0.421 Sum_probs=73.3
Q ss_pred ccccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC---------------------
Q 004423 32 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR--------------------- 90 (754)
Q Consensus 32 ~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck--------------------- 90 (754)
.-++.|.+|-..+ .+++|..|++.||..|+.++... .+...|.|--|.
T Consensus 342 ~~ddhcrf~~d~~--------~~lc~Et~prvvhlEcv~hP~~~---~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~i 410 (1414)
T KOG1473|consen 342 EYDDHCRFCHDLG--------DLLCCETCPRVVHLECVFHPRFA---VPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSI 410 (1414)
T ss_pred eecccccccCccc--------ceeecccCCceEEeeecCCcccc---CCCccchhhhhhhhccCcccccccChhhcccce
Confidence 3457999999876 89999999999999999987543 345789988886
Q ss_pred -------------------ccccccccCCCCCceeCCC-CCCcccc-ccCCCCC--ccCCCCCcccCCCcc
Q 004423 91 -------------------ICEICRRTGDPNKFMFCRR-CDAAYHC-YCQHPPH--KNVSSGPYLCPKHTK 138 (754)
Q Consensus 91 -------------------~C~vC~~sgd~~kLL~Cd~-C~raYH~-~CL~Ppl--~~vp~g~W~CP~C~~ 138 (754)
.|.+|+.. +..+.|+. |+..||. .|++... ..++.+.|.|+.|..
T Consensus 411 R~~~iG~dr~gr~ywfi~rrl~Ie~~d---et~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~ 478 (1414)
T KOG1473|consen 411 RHTPIGRDRYGRKYWFISRRLRIEGMD---ETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEII 478 (1414)
T ss_pred eccCCCcCccccchhceeeeeEEecCC---CcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHH
Confidence 45555533 37888886 9999999 9999533 347889999999864
No 26
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.21 E-value=0.00011 Score=78.28 Aligned_cols=38 Identities=32% Similarity=0.897 Sum_probs=32.0
Q ss_pred CCCCceeccC--cC-CeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 186 ESTPMVCCDV--CQ-RWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 186 dgg~MLqCDs--C~-~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
..+.||.||. |+ .|||..|++|..+ +.+.|||+.|+..
T Consensus 228 syg~Mi~CDn~~C~~eWFH~~CVGL~~~--------PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 228 SYGKMIGCDNPGCPIEWFHFTCVGLKTK--------PKGKWYCPRCKAE 268 (274)
T ss_pred ccccccccCCCCCCcceEEEeccccccC--------CCCcccchhhhhh
Confidence 3578999998 99 9999999998643 4578999999864
No 27
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.13 E-value=0.00019 Score=80.87 Aligned_cols=50 Identities=22% Similarity=0.538 Sum_probs=40.7
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
.++.|.+|.+... +..+-+++|+.|.-.-|..|.++.. ++.+.|.|..|.
T Consensus 192 ~d~~C~~c~~t~~---eN~naiVfCdgC~i~VHq~CYGI~f-----~peG~WlCrkCi 241 (669)
T COG5141 192 FDDICTKCTSTHN---ENSNAIVFCDGCEICVHQSCYGIQF-----LPEGFWLCRKCI 241 (669)
T ss_pred hhhhhHhcccccc---CCcceEEEecCcchhhhhhccccee-----cCcchhhhhhhc
Confidence 4568888887654 4467899999999999999999854 345889999996
No 28
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.13 E-value=0.00021 Score=83.88 Aligned_cols=49 Identities=33% Similarity=0.771 Sum_probs=39.8
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCc-cchhccCCCccccccCCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKK-YHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rs-YH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
..-|.+|.... ..+-||+|+.|... ||.+||+|++-.. +...|+|++|.
T Consensus 215 ~~~C~IC~~~D-----pEdVLLLCDsCN~~~YH~YCLDPdl~ei---P~~eWYC~NC~ 264 (1134)
T KOG0825|consen 215 EVKCDICTVHD-----PEDVLLLCDSCNKVYYHVYCLDPDLSES---PVNEWYCTNCS 264 (1134)
T ss_pred cccceeeccCC-----hHHhheeecccccceeeccccCcccccc---cccceecCcch
Confidence 35899999865 34589999999988 9999999976433 34889999994
No 29
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.02 E-value=0.00023 Score=74.79 Aligned_cols=46 Identities=35% Similarity=0.946 Sum_probs=35.5
Q ss_pred CccCccccccccCCCCCCceeccC--cC-CeecccCCCCChHHHhhhccCCCCceeCCCCCC
Q 004423 172 GNYCPVCLKVYRDSESTPMVCCDV--CQ-RWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 230 (754)
Q Consensus 172 gnyCpVC~K~Y~Dsdgg~MLqCDs--C~-~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~ 230 (754)
..||+ |.++ .-++||.||. |. .|||..|++|..+ +.+.|+|+.|+.
T Consensus 221 ~lYCf-Cqqv----SyGqMVaCDn~nCkrEWFH~~CVGLk~p--------PKG~WYC~eCk~ 269 (271)
T COG5034 221 ELYCF-CQQV----SYGQMVACDNANCKREWFHLECVGLKEP--------PKGKWYCPECKK 269 (271)
T ss_pred eeEEE-eccc----ccccceecCCCCCchhheeccccccCCC--------CCCcEeCHHhHh
Confidence 34676 6654 3578999987 76 6999999998543 578999999974
No 30
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.97 E-value=0.00037 Score=81.53 Aligned_cols=45 Identities=33% Similarity=0.900 Sum_probs=39.5
Q ss_pred ccccccccCCC--CCceeCCCCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 91 ICEICRRTGDP--NKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~--~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
.|.+|..+..+ +.|+||+.|....|..|++ +..+|.+.|.|..|.
T Consensus 273 iCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Ca 319 (893)
T KOG0954|consen 273 ICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCA 319 (893)
T ss_pred eeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhcc
Confidence 89999877433 4799999999999999999 778999999999985
No 31
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=96.90 E-value=0.0012 Score=66.11 Aligned_cols=33 Identities=24% Similarity=0.816 Sum_probs=25.0
Q ss_pred ccccccc---cCCCCCceeCCCCCCccccccCCCCC
Q 004423 91 ICEICRR---TGDPNKFMFCRRCDAAYHCYCQHPPH 123 (754)
Q Consensus 91 ~C~vC~~---sgd~~kLL~Cd~C~raYH~~CL~Ppl 123 (754)
+|.+|.. ...-..||+|..|..+||..||++-.
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs 36 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRS 36 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCcc
Confidence 3666643 33344799999999999999999744
No 32
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=96.82 E-value=0.00057 Score=82.89 Aligned_cols=129 Identities=15% Similarity=0.151 Sum_probs=81.8
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCcccCCCCCCCCCCCCccccccCccccCCCccccc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFV 170 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~~lf~ 170 (754)
.|.+|.+.+ .+++|..|++.||..|+.++...++...|-|.-|..|..-|....--.....|. ++.|.+=+....
T Consensus 346 hcrf~~d~~---~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~--~iR~~~iG~dr~ 420 (1414)
T KOG1473|consen 346 HCRFCHDLG---DLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVD--SIRHTPIGRDRY 420 (1414)
T ss_pred cccccCccc---ceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhccc--ceeccCCCcCcc
Confidence 677777666 799999999999999999999999999999999887664443210000011111 112222111111
Q ss_pred ------CCccCccccccccCCCCCCceeccC-cCCeecc-cCCCCChHHHhhhccCCCCceeCCCCCCCCCC
Q 004423 171 ------KGNYCPVCLKVYRDSESTPMVCCDV-CQRWVHC-QCDGISDEKYLQFQVDGNLQYRCPTCRGECYQ 234 (754)
Q Consensus 171 ------KgnyCpVC~K~Y~Dsdgg~MLqCDs-C~~wFH~-eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~~q 234 (754)
...-|.+|. .+..+++|.. |+..||. .|++- .|.++.+ .++.|+|+.|....+.
T Consensus 421 gr~ywfi~rrl~Ie~------~det~l~yysT~pqly~ll~cLd~---~~~e~~L-~d~i~~~~ee~~rqM~ 482 (1414)
T KOG1473|consen 421 GRKYWFISRRLRIEG------MDETLLWYYSTCPQLYHLLRCLDR---TYVEMYL-CDGIWERREEIIRQMG 482 (1414)
T ss_pred ccchhceeeeeEEec------CCCcEEEEecCcHHHHHHHHHhch---HHHHHhh-ccchhhhHHHHHHhcc
Confidence 112277775 2456778876 9999999 99663 2333222 3568999988766543
No 33
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=96.71 E-value=0.00093 Score=81.92 Aligned_cols=108 Identities=23% Similarity=0.487 Sum_probs=74.7
Q ss_pred ccccccccCCC--CCceeCCCCCCccccccCCCCCccCCCCCcccCCCcc-------cCCCCCCCCC--CCCccccccCc
Q 004423 91 ICEICRRTGDP--NKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK-------CHSCGSNVPG--NGLSVRWFLGY 159 (754)
Q Consensus 91 ~C~vC~~sgd~--~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~-------C~~Cg~~~pg--k~~s~RW~~~~ 159 (754)
+|.+|....-. +.+|+|+.|+.++|++|++ .+.+|.+.|.|..|.. |..|....-. .....+|.+
T Consensus 221 ~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dgrw~H-- 296 (1051)
T KOG0955|consen 221 VCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDGRWAH-- 296 (1051)
T ss_pred cceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcCcccceEeccCCCCcceeccCCceee--
Confidence 88999887665 6799999999999999999 6678999999999953 6677654211 223457765
Q ss_pred cccCC----------------Cccccc---C-CccCccccccccCCCCCCceeccC--cCCeecccCCC
Q 004423 160 TCCDA----------------CGRLFV---K-GNYCPVCLKVYRDSESTPMVCCDV--CQRWVHCQCDG 206 (754)
Q Consensus 160 slC~~----------------C~~lf~---K-gnyCpVC~K~Y~Dsdgg~MLqCDs--C~~wFH~eCd~ 206 (754)
..|.. +..... . ...|++|.... -+..|+|.. |-.|||..|+.
T Consensus 297 v~caiwipev~F~nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~----~gaciqcs~~~c~~a~hvtca~ 361 (1051)
T KOG0955|consen 297 VVCAIWIPEVSFANTVFLEPIDSIENIPPARWKLTCYICKQKG----LGACIQCSKANCYTAFHVTCAR 361 (1051)
T ss_pred eehhhcccccccccchhhccccchhcCcHhhhhceeeeeccCC----CCcceecchhhhhhhhhhhhHh
Confidence 22211 000001 1 13499998642 255688865 99999999975
No 34
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.61 E-value=0.00089 Score=70.57 Aligned_cols=41 Identities=22% Similarity=0.660 Sum_probs=33.5
Q ss_pred cccccCCCCCceeCC--CCC-CccccccCCCCCccCCCCCcccCCCc
Q 004423 94 ICRRTGDPNKFMFCR--RCD-AAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 94 vC~~sgd~~kLL~Cd--~C~-raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
.|.+.. -..|+-|| .|. .|||..|++ +...|.|.||||.|.
T Consensus 225 fCqqvS-yGqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk 268 (271)
T COG5034 225 FCQQVS-YGQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECK 268 (271)
T ss_pred Eecccc-cccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhH
Confidence 566532 23799999 687 599999999 788899999999985
No 35
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.59 E-value=0.0012 Score=64.99 Aligned_cols=26 Identities=35% Similarity=0.859 Sum_probs=24.4
Q ss_pred ccccccCCCCCccCCCCCcccCCCcc
Q 004423 113 AYHCYCQHPPHKNVSSGPYLCPKHTK 138 (754)
Q Consensus 113 aYH~~CL~Ppl~~vp~g~W~CP~C~~ 138 (754)
+||+.||.||+..+|.|.|+||.|..
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~ 26 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEV 26 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcC
Confidence 59999999999999999999999974
No 36
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=96.53 E-value=0.00041 Score=77.28 Aligned_cols=138 Identities=21% Similarity=0.363 Sum_probs=70.5
Q ss_pred ccccccccccCCccCCCceEEeCcCCCccchhccCCCcccccc----C--CCCCccCCCCC-----ccccccccCCCCCc
Q 004423 36 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDL----F--HWSSWKCPSCR-----ICEICRRTGDPNKF 104 (754)
Q Consensus 36 ~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~----v--~~~~W~Cp~Ck-----~C~vC~~sgd~~kL 104 (754)
+|.-|...-. .+-.-|..=++-||..|..-..-.+.+ + ..+.-+|-.|- .|.+|+..-.+ +|
T Consensus 276 iC~~C~K~V~------g~~~ac~Am~~~fHv~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlekC~~Cg~~I~d-~i 348 (468)
T KOG1701|consen 276 ICAFCHKTVS------GQGLAVEAMDQLFHVQCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEKCNKCGEPIMD-RI 348 (468)
T ss_pred hhhhcCCccc------CcchHHHHhhhhhcccceehHhhhhhhccccccccCCcccchHHHHHHHHHHhhhhhHHHH-HH
Confidence 6777765421 134456666788888776432110000 0 12344566664 67777765422 33
Q ss_pred eeCCCCCCccccccCCCCCccCCCCCcccCCCcccCCCCCCCCCCCCccccccCccccCCCcccccCC--ccCccccccc
Q 004423 105 MFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKG--NYCPVCLKVY 182 (754)
Q Consensus 105 L~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~~lf~Kg--nyCpVC~K~Y 182 (754)
| ..|+++||..|.. |+.|..|-...+ -.--..+...|..|. ++. --|.+|.+..
T Consensus 349 L--rA~GkayHp~CF~---------------Cv~C~r~ldgip----Ftvd~~n~v~Cv~df---h~kfAPrCs~C~~PI 404 (468)
T KOG1701|consen 349 L--RALGKAYHPGCFT---------------CVVCARCLDGIP----FTVDSQNNVYCVPDF---HKKFAPRCSVCGNPI 404 (468)
T ss_pred H--HhcccccCCCceE---------------EEEeccccCCcc----ccccCCCceeeehhh---hhhcCcchhhccCCc
Confidence 3 4789999977643 444444422111 011122445665553 222 1288888877
Q ss_pred cCCCCCC-ceeccCcCCeecccC
Q 004423 183 RDSESTP-MVCCDVCQRWVHCQC 204 (754)
Q Consensus 183 ~Dsdgg~-MLqCDsC~~wFH~eC 204 (754)
...++.+ .|.=..=++-||.+|
T Consensus 405 ~P~~G~~etvRvvamdr~fHv~C 427 (468)
T KOG1701|consen 405 LPRDGKDETVRVVAMDRDFHVNC 427 (468)
T ss_pred cCCCCCcceEEEEEccccccccc
Confidence 5554433 333333356778777
No 37
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.53 E-value=0.00085 Score=75.88 Aligned_cols=80 Identities=23% Similarity=0.512 Sum_probs=50.1
Q ss_pred cccccccccccCCccCCCceEEeCcCCCccchhccCCCccc-----cccCCCCCccCCCCC------ccccccccCCCCC
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQN-----RDLFHWSSWKCPSCR------ICEICRRTGDPNK 103 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~-----~~~v~~~~W~Cp~Ck------~C~vC~~sgd~~k 103 (754)
.+|-||... .+...+++|-|+.||-..|-.|.+..... ........|+|.-|. -|..|-..+.
T Consensus 120 ~iCcVClg~---rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~G--- 193 (707)
T KOG0957|consen 120 VICCVCLGQ---RSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFG--- 193 (707)
T ss_pred eEEEEeecC---ccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCC---
Confidence 489999873 25567799999999999999999876211 111124789998884 3444432221
Q ss_pred ceeCCCCCCccccccCC
Q 004423 104 FMFCRRCDAAYHCYCQH 120 (754)
Q Consensus 104 LL~Cd~C~raYH~~CL~ 120 (754)
+..=..-++|.|..|.-
T Consensus 194 ifKetDigrWvH~iCAL 210 (707)
T KOG0957|consen 194 IFKETDIGRWVHAICAL 210 (707)
T ss_pred cccccchhhHHHHHHHh
Confidence 11111234677777753
No 38
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=96.45 E-value=0.0058 Score=49.31 Aligned_cols=52 Identities=13% Similarity=0.322 Sum_probs=44.9
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecCceeeEeeecc
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELGKQGVRFVPQK 748 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-g~~~~~~~gk~~vr~~~~~ 748 (754)
++|..|.+.+ .|+.|+.|+|.++... ..+.|.|.| |..+++. ...+|.+|..
T Consensus 4 ~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~--~~~l~~l~~~ 56 (57)
T smart00333 4 KVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVP--PSDLRPLPEE 56 (57)
T ss_pred CCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccEEEe--HHHeecCCCC
Confidence 5789999999 9999999999999884 349999999 9998776 6779998875
No 39
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.28 E-value=0.0014 Score=74.22 Aligned_cols=47 Identities=26% Similarity=0.703 Sum_probs=41.7
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCC----CcccCCCc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSG----PYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g----~W~CP~C~ 137 (754)
.|.+|++..++-.++.|+.|...||..||.||++.+|.. .|.|..|-
T Consensus 546 sCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 546 SCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred eeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 789999998887899999999999999999999988753 69998873
No 40
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=96.22 E-value=0.001 Score=84.12 Aligned_cols=48 Identities=31% Similarity=0.971 Sum_probs=45.5
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCcc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~ 138 (754)
.|.+|+..+....|+.|+.|..+||.+|+.|.+..++.+.|+||.|+.
T Consensus 1110 ~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~ 1157 (1404)
T KOG1245|consen 1110 LCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRK 1157 (1404)
T ss_pred hhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccch
Confidence 899999998888999999999999999999999999999999999874
No 41
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=95.80 E-value=0.0058 Score=66.24 Aligned_cols=90 Identities=20% Similarity=0.416 Sum_probs=55.0
Q ss_pred CceeCCCCCCccccccCCCCCccCCCCCcccCCCcccC---CCCCCC--CCCCCccccccCccccCCCcccccCCccCcc
Q 004423 103 KFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCH---SCGSNV--PGNGLSVRWFLGYTCCDACGRLFVKGNYCPV 177 (754)
Q Consensus 103 kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~C~---~Cg~~~--pgk~~s~RW~~~~slC~~C~~lf~KgnyCpV 177 (754)
.+..|..|.-++|..=...- -...+.|.|.-|..|. .|.... .......-|.+++ +|.||.
T Consensus 67 ~agvC~~C~~~CH~~H~lve--L~tKR~FrCDCg~sk~g~~sc~l~~~~~~~n~~N~YNhNf-----------qG~~C~- 132 (345)
T KOG2752|consen 67 MAGVCYACSLSCHDGHELVE--LYTKRNFRCDCGNSKFGRCSCNLLEDKDAENSENLYNHNF-----------QGLFCK- 132 (345)
T ss_pred hceeEEEeeeeecCCceeee--ccccCCcccccccccccccccccccccccccchhhhhhhh-----------cceeEE-
Confidence 67889999988887554421 1235678876443332 232111 1112223344433 445564
Q ss_pred ccccccC---CCCCCceeccCcCCeec-ccCCC
Q 004423 178 CLKVYRD---SESTPMVCCDVCQRWVH-CQCDG 206 (754)
Q Consensus 178 C~K~Y~D---sdgg~MLqCDsC~~wFH-~eCd~ 206 (754)
|.+.|.+ ..++.|+||..|+-||| ..|.+
T Consensus 133 Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~ 165 (345)
T KOG2752|consen 133 CDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQ 165 (345)
T ss_pred ecCCCCCccccccceeeeEEeccchhcccccCc
Confidence 9999976 35688999999999999 77765
No 42
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=95.66 E-value=0.026 Score=47.27 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=36.1
Q ss_pred cccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccceecC
Q 004423 691 KDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELG 738 (754)
Q Consensus 691 ~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~~~g 738 (754)
|=++|.+|.|.||-++.|++|.|++.-.-+-.-.|.++||...+|..+
T Consensus 5 k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel~lke~ 52 (55)
T PF09465_consen 5 KFAIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTELELKEN 52 (55)
T ss_dssp SS-SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-EEEEECC
T ss_pred cccCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCEEEeccc
Confidence 458999999999999999999999965555559999999998766544
No 43
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=95.07 E-value=0.041 Score=45.43 Aligned_cols=53 Identities=23% Similarity=0.333 Sum_probs=39.8
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCC-cccceecCceeeEeee
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDS-RVKTLELGKQGVRFVP 746 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g-~~~~~~~gk~~vr~~~ 746 (754)
.+|-+|||....++.|+.|+|+.|.. ..++.|.|++. ...+.++-...+|.+|
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~~~~~~~e~v~~~~LRp~~ 57 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLTESEPLKETVDWSDLRPHP 57 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECCCCcccEEEEeHHHcccCC
Confidence 57999999999999999999999988 33599999882 2223344455566654
No 44
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=93.94 E-value=0.13 Score=40.19 Aligned_cols=42 Identities=14% Similarity=0.338 Sum_probs=35.0
Q ss_pred cceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-Ccccceec
Q 004423 695 GKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLEL 737 (754)
Q Consensus 695 ~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-g~~~~~~~ 737 (754)
|..+.+.++.|+.|+.++|..+.. ..++.|.|.| |..+++.+
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~ 43 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPL 43 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeH
Confidence 567888898899999999999984 3349999999 99988764
No 45
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=93.91 E-value=0.016 Score=73.80 Aligned_cols=54 Identities=31% Similarity=0.773 Sum_probs=44.1
Q ss_pred CCCccccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 29 GQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 29 ~~s~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
..+.....|.+|...+. .+.|+.|+.|...||.+|+.+.... ++.+.|+|+.|+
T Consensus 1103 ~~s~~~~~c~~cr~k~~-----~~~m~lc~~c~~~~h~~C~rp~~~~---~~~~dW~C~~c~ 1156 (1404)
T KOG1245|consen 1103 DRSAVNALCKVCRRKKQ-----DEKMLLCDECLSGFHLFCLRPALSS---VPPGDWMCPSCR 1156 (1404)
T ss_pred ccccchhhhhhhhhccc-----chhhhhhHhhhhhHHHHhhhhhhcc---CCcCCccCCccc
Confidence 34556679999998763 3599999999999999999997643 345899999997
No 46
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=93.84 E-value=0.028 Score=62.16 Aligned_cols=175 Identities=16% Similarity=0.318 Sum_probs=96.3
Q ss_pred ceEEeCcCCCccchhc--cCCCccccccCCCCCccCCCCC------------ccccccccCCC----CCceeCCCCCCcc
Q 004423 53 RMLSCKSCGKKYHRNC--LKNWAQNRDLFHWSSWKCPSCR------------ICEICRRTGDP----NKFMFCRRCDAAY 114 (754)
Q Consensus 53 eLL~Cd~C~rsYH~~C--L~p~~e~~~~v~~~~W~Cp~Ck------------~C~vC~~sgd~----~kLL~Cd~C~raY 114 (754)
.++-|+.|-.+||..| ++++....+ +...|.|..|. .| +|.....+ ...+-+..|..++
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~~~e~p--~~~~~~c~~c~~~~~~~~~~~~l~~-~~~~~~~~~~s~s~~~~~~~~~~~~ 150 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTAEKEAP--KEDPKVCDECKEAQDGMSESDGLSC-VCRQDDSELLSPSFYFGKRGCQFWV 150 (345)
T ss_pred hhhccccccccccccccccCchhhcCC--ccccccccccchhhhhhhhhcccee-ecccccccccccccccCCccccccc
Confidence 6899999999999999 888755433 44789999996 33 44433221 1235677888888
Q ss_pred ccccCCCCCc-cCCCCCcccCCCcccCCC-------------------CCCCCC--CCCcccccc--C--c------ccc
Q 004423 115 HCYCQHPPHK-NVSSGPYLCPKHTKCHSC-------------------GSNVPG--NGLSVRWFL--G--Y------TCC 162 (754)
Q Consensus 115 H~~CL~Ppl~-~vp~g~W~CP~C~~C~~C-------------------g~~~pg--k~~s~RW~~--~--~------slC 162 (754)
|..|+..-.. ..-.....|+.|..=..- +..... ......|.+ + . .+|
T Consensus 151 ~~~~~~~~r~~~~~~~~~t~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (345)
T KOG1632|consen 151 KLQKLGRVRLEAEKNDDPTVFEVVSGTATGELPSKDKSSNDRGSKSKTRKKRNRESELEEKKRKHFSNEELTEPAREPVD 230 (345)
T ss_pred cchhhhhhhhhhhhcccchhhhcccccccccccccccccccccceecccCcccccchhhhhhhhhccCcccccccccCCC
Confidence 9888874222 112223344444311010 000000 000001110 0 0 022
Q ss_pred CCCcccccCCccCccccccccCCCCCCceeccCcCCeecccCCCCChH--HHhhhccCCCCceeCCCCCCCCCCCC
Q 004423 163 DACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDE--KYLQFQVDGNLQYRCPTCRGECYQVR 236 (754)
Q Consensus 163 ~~C~~lf~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE--~ye~~~~d~d~~Y~CptCr~~~~qIk 236 (754)
..+.. ...+.+|..|+-.|... .-|++|+.|..|||..|+.+.+. .|.... +..|+|+.|....+...
T Consensus 231 ~~~~~-~~~~~~~~~cg~~~~~~--~~~~~~~~~e~w~~~~~v~~~~a~~~~~~~~---~~~~~c~~~~~~~~~k~ 300 (345)
T KOG1632|consen 231 ESEAP-DYSKLICDPCGLSDANK--KFEICCDLCESWFHGDCVQIFEARKRLNEIR---NEVYKCPHCTVLKFEKK 300 (345)
T ss_pred ccccc-ccccccccccCcchHHH--HHHHHHHHHHHHhcccccccccchhhhhhhh---ccceecCceeecccchh
Confidence 22221 12334577776543222 45788999999999999997543 333322 35799999987554433
No 47
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=93.59 E-value=0.082 Score=60.05 Aligned_cols=68 Identities=19% Similarity=0.515 Sum_probs=45.8
Q ss_pred cCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhcc-------CCCCceeCCCCCCCCCCCCchHHHHH
Q 004423 174 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQV-------DGNLQYRCPTCRGECYQVRDLEDAVR 243 (754)
Q Consensus 174 yCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~-------d~d~~Y~CptCr~~~~qIk~lkda~~ 243 (754)
.|.+|.+.....++-.||.|+.|.+|-|.+|.--. .+...+. .-+..|+|..|-+...-+-|+++...
T Consensus 130 ~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~--~~i~~G~s~~g~~g~~d~~f~C~~C~~~seLlG~vk~vf~ 204 (446)
T PF07227_consen 130 MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRH--ELIGTGPSVKGSIGTLDMQFHCRACGKTSELLGFVKKVFQ 204 (446)
T ss_pred CccccCCcccCCCCeeEEeccCCCceehhhhhccc--ccccCCccCCCCCccCceEEEccCCCChhhHHHHHHHHHH
Confidence 58999884344456679999999999999995421 1111111 12569999999877665556655543
No 48
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=93.31 E-value=0.014 Score=44.75 Aligned_cols=33 Identities=33% Similarity=0.822 Sum_probs=18.6
Q ss_pred CCceeCCCCCCccccccCCCCCccCCCC-CcccCCC
Q 004423 102 NKFMFCRRCDAAYHCYCQHPPHKNVSSG-PYLCPKH 136 (754)
Q Consensus 102 ~kLL~Cd~C~raYH~~CL~Ppl~~vp~g-~W~CP~C 136 (754)
+.||+|+.|....|..|++. ..++.+ .|+|..|
T Consensus 2 n~ll~C~~C~v~VH~~CYGv--~~~~~~~~W~C~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGV--SEVPDGDDWLCDRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH
T ss_pred CceEEeCCCCCcCChhhCCc--ccCCCCCcEECCcC
Confidence 47999999999999999994 344444 6999775
No 49
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=92.51 E-value=0.067 Score=52.93 Aligned_cols=24 Identities=29% Similarity=0.764 Sum_probs=20.4
Q ss_pred ccchhccCCCccccccCCCCCccCCCC
Q 004423 63 KYHRNCLKNWAQNRDLFHWSSWKCPSC 89 (754)
Q Consensus 63 sYH~~CL~p~~e~~~~v~~~~W~Cp~C 89 (754)
+||+.||.|+... ++.+.|.||.|
T Consensus 1 g~H~~CL~Ppl~~---~P~g~W~Cp~C 24 (148)
T cd04718 1 GFHLCCLRPPLKE---VPEGDWICPFC 24 (148)
T ss_pred CcccccCCCCCCC---CCCCCcCCCCC
Confidence 5999999998764 45699999999
No 50
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=91.72 E-value=0.047 Score=41.86 Aligned_cols=34 Identities=24% Similarity=0.695 Sum_probs=19.0
Q ss_pred CceEEeCcCCCccchhccCCCccccccCCCCCccCCCC
Q 004423 52 RRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 89 (754)
Q Consensus 52 eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~C 89 (754)
+.||.|+.|.-..|..|.+....+.. ..|.|..|
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~----~~W~C~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDG----DDWLCDRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS---------HHH
T ss_pred CceEEeCCCCCcCChhhCCcccCCCC----CcEECCcC
Confidence 48999999999999999998654322 35998776
No 51
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.42 E-value=0.17 Score=57.58 Aligned_cols=83 Identities=20% Similarity=0.567 Sum_probs=51.9
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCCccccccccCCCCCceeCCCCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDA 112 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck~C~vC~~sgd~~kLL~Cd~C~r 112 (754)
..+.|.||....+.. -..|.=..|..+||..|+..|.. -.||-|++|+. ++ ......|..|+.
T Consensus 174 ELPTCpVCLERMD~s----~~gi~t~~c~Hsfh~~cl~~w~~---------~scpvcR~~q~---p~-~ve~~~c~~c~~ 236 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSS----TTGILTILCNHSFHCSCLMKWWD---------SSCPVCRYCQS---PS-VVESSLCLACGC 236 (493)
T ss_pred cCCCcchhHhhcCcc----ccceeeeecccccchHHHhhccc---------CcChhhhhhcC---cc-hhhhhhhhhhcc
Confidence 457999999876432 25677789999999999988753 35666666654 32 113344555532
Q ss_pred ccccccCCCCCccCCCCCcccCCCcccCCCCCCCC
Q 004423 113 AYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVP 147 (754)
Q Consensus 113 aYH~~CL~Ppl~~vp~g~W~CP~C~~C~~Cg~~~p 147 (754)
. ..-|.|-.|-. ..||....
T Consensus 237 ~--------------~~LwicliCg~-vgcgrY~e 256 (493)
T KOG0804|consen 237 T--------------EDLWICLICGN-VGCGRYKE 256 (493)
T ss_pred c--------------ccEEEEEEccc-eecccccc
Confidence 2 23477766542 45776543
No 52
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=89.90 E-value=0.38 Score=58.30 Aligned_cols=62 Identities=34% Similarity=0.948 Sum_probs=47.8
Q ss_pred cccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC----------ccccccccCCC
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR----------ICEICRRTGDP 101 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck----------~C~vC~~sgd~ 101 (754)
-.|.||...-. ....+-.|..|...||+.|+..|...+.......|.||.|. +| .|+...++
T Consensus 192 yeCmIC~e~I~----~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~~~y~C-~CGk~~nP 263 (950)
T KOG1952|consen 192 YECMICTERIK----RTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVPKTYLC-FCGKVKNP 263 (950)
T ss_pred eEEEEeeeecc----ccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccCCcccce-ecCcccCC
Confidence 48999998642 23488999999999999999999766444345799999997 56 57765554
No 53
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.36 E-value=0.35 Score=53.80 Aligned_cols=36 Identities=28% Similarity=0.772 Sum_probs=28.8
Q ss_pred cccccccccccCCccCCCceEEeCcCCCccchhccCCCccc
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQN 75 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~ 75 (754)
+.|.||.+.-..| +.|.=-.|.+.||..|+++|...
T Consensus 230 ~~CaIClEdY~~G-----dklRiLPC~H~FH~~CIDpWL~~ 265 (348)
T KOG4628|consen 230 DTCAICLEDYEKG-----DKLRILPCSHKFHVNCIDPWLTQ 265 (348)
T ss_pred ceEEEeecccccC-----CeeeEecCCCchhhccchhhHhh
Confidence 5999999876443 55555899999999999999753
No 54
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=88.29 E-value=0.75 Score=44.32 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=31.0
Q ss_pred ccccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccce
Q 004423 690 GKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTL 735 (754)
Q Consensus 690 g~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~ 735 (754)
|.+-||+||---|.+++-.+-|+|+-= .+-.++.|.||||...+|
T Consensus 1 ~~~~iG~rV~AkWS~n~yyY~G~I~~~-~~~~kykv~FdDG~~~~v 45 (122)
T PF09038_consen 1 GSSFIGLRVFAKWSDNGYYYPGKITSD-KGKNKYKVLFDDGYECRV 45 (122)
T ss_dssp ---STT-EEEEESSTTSEEEEEEEEEE-ETTTEEEEEETTS-EEEE
T ss_pred CCcccccEEEEEEccCCcccCceEeec-CCCCeEEEEecCCcccee
Confidence 678899999999954444489988773 455579999999987644
No 55
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=87.92 E-value=0.15 Score=44.12 Aligned_cols=54 Identities=30% Similarity=0.672 Sum_probs=21.8
Q ss_pred cccccccccccCCccCCCceEEeC--cCCCccchhccCCCccccc----cCCCCCccCCCCC
Q 004423 35 VMCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQNRD----LFHWSSWKCPSCR 90 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd--~C~rsYH~~CL~p~~e~~~----~v~~~~W~Cp~Ck 90 (754)
..|.||...-.+. .....+.|. .|+..||..||..|....+ .+..-.+.||.|.
T Consensus 3 ~~C~IC~~~~~~~--~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~ 62 (70)
T PF11793_consen 3 LECGICYSYRLDD--GEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCS 62 (70)
T ss_dssp -S-SSS--SS-TT-------B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-
T ss_pred CCCCcCCcEecCC--CCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCC
Confidence 5799999864211 122468998 9999999999998854221 1222345688884
No 56
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=87.92 E-value=0.093 Score=40.76 Aligned_cols=44 Identities=30% Similarity=0.924 Sum_probs=29.7
Q ss_pred cccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
+.|.||...-.. .+.++... |+..||..|+..|.... ..||.|+
T Consensus 1 d~C~IC~~~~~~----~~~~~~l~-C~H~fh~~Ci~~~~~~~-------~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFED----GEKVVKLP-CGHVFHRSCIKEWLKRN-------NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHT----TSCEEEET-TSEEEEHHHHHHHHHHS-------SB-TTTH
T ss_pred CCCcCCChhhcC----CCeEEEcc-CCCeeCHHHHHHHHHhC-------CcCCccC
Confidence 369999986532 23555555 99999999999887532 2677763
No 57
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=85.67 E-value=0.6 Score=42.79 Aligned_cols=72 Identities=26% Similarity=0.450 Sum_probs=46.3
Q ss_pred ccccccccccCCccCCCceEEeCcCCCccchhccCCCcccc------------ccCCCCCccCCCCCccccccccCCCCC
Q 004423 36 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNR------------DLFHWSSWKCPSCRICEICRRTGDPNK 103 (754)
Q Consensus 36 ~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~------------~~v~~~~W~Cp~Ck~C~vC~~sgd~~k 103 (754)
.|.+|...| ..+.-..-+++.|..|.-..++.. ..+....|. ..|.+|+... .-
T Consensus 2 ~C~lC~~~~--------Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~----~~C~iC~~~~--G~ 67 (110)
T PF13832_consen 2 SCVLCPKRG--------GALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFK----LKCSICGKSG--GA 67 (110)
T ss_pred ccEeCCCCC--------CcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhcC----CcCcCCCCCC--ce
Confidence 588898754 233334468899999987533210 011111121 3778888763 26
Q ss_pred ceeCCC--CCCccccccCCC
Q 004423 104 FMFCRR--CDAAYHCYCQHP 121 (754)
Q Consensus 104 LL~Cd~--C~raYH~~CL~P 121 (754)
.+.|.. |..+||..|...
T Consensus 68 ~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 68 CIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred eEEcCCCCCCcCCCHHHHHH
Confidence 899998 999999999874
No 58
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=85.13 E-value=0.57 Score=39.34 Aligned_cols=34 Identities=26% Similarity=0.710 Sum_probs=27.5
Q ss_pred cccccccccccCCccCCCceEEeCcCCCccchhccCCC
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNW 72 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~ 72 (754)
..|.+|+..-. ..++++.|..|+..||+.|....
T Consensus 6 ~~C~~Cg~~~~----~~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 6 CKCPVCGKKFK----DGDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred ccChhhCCccc----CCCCEEECCCCCCcccHHHHhhC
Confidence 47999987542 13499999999999999999753
No 59
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=84.91 E-value=0.28 Score=44.55 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=32.8
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCcc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~ 138 (754)
.|..|+.+|++-.++.+. |...||..|+..-+..- ...=.||.|+.
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~-~~~~~CPmCR~ 79 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQ-SSKGQCPMCRQ 79 (85)
T ss_pred CCCCccCCCCCCceeecc-CccHHHHHHHHHHHccc-cCCCCCCCcCC
Confidence 566778888877777666 99999999988544432 22347888763
No 60
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=83.40 E-value=0.39 Score=37.27 Aligned_cols=43 Identities=35% Similarity=0.845 Sum_probs=28.1
Q ss_pred cCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCC
Q 004423 174 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 229 (754)
Q Consensus 174 yCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr 229 (754)
-|+||...+.+.+ .++... |.+.||.+|+. .|... .+.||.||
T Consensus 2 ~C~IC~~~~~~~~--~~~~l~-C~H~fh~~Ci~----~~~~~------~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGE--KVVKLP-CGHVFHRSCIK----EWLKR------NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTS--CEEEET-TSEEEEHHHHH----HHHHH------SSB-TTTH
T ss_pred CCcCCChhhcCCC--eEEEcc-CCCeeCHHHHH----HHHHh------CCcCCccC
Confidence 4889988775532 344454 99999999943 23222 35999996
No 61
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=82.46 E-value=0.84 Score=51.85 Aligned_cols=10 Identities=30% Similarity=0.537 Sum_probs=5.5
Q ss_pred cccccccccc
Q 004423 35 VMCRLCFVGE 44 (754)
Q Consensus 35 ~~C~vC~~gG 44 (754)
.-|+.|..+.
T Consensus 300 v~CFtC~~C~ 309 (468)
T KOG1701|consen 300 VQCFTCRTCR 309 (468)
T ss_pred ccceehHhhh
Confidence 4566665543
No 62
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=82.05 E-value=0.76 Score=47.26 Aligned_cols=44 Identities=32% Similarity=0.854 Sum_probs=33.9
Q ss_pred cCCCCC----ccccccccC-----CCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 85 KCPSCR----ICEICRRTG-----DPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 85 ~Cp~Ck----~C~vC~~sg-----d~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
.|+.|. +|.+|.... +......|..|...||..|... -.||.|.
T Consensus 144 ~C~lC~~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~ 196 (202)
T PF13901_consen 144 SCELCQQKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCA 196 (202)
T ss_pred HhHHHHhCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcH
Confidence 577786 899998653 2236799999999999999983 1288875
No 63
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=81.28 E-value=1.4 Score=38.30 Aligned_cols=55 Identities=25% Similarity=0.582 Sum_probs=20.7
Q ss_pred cCccccccccCCCCCCceecc--CcCCeecccCCCCChHHHhhhccCC-C---CceeCCCCCCC
Q 004423 174 YCPVCLKVYRDSESTPMVCCD--VCQRWVHCQCDGISDEKYLQFQVDG-N---LQYRCPTCRGE 231 (754)
Q Consensus 174 yCpVC~K~Y~Dsdgg~MLqCD--sC~~wFH~eCd~LsdE~ye~~~~d~-d---~~Y~CptCr~~ 231 (754)
-|+||.....+.+..+.+.|+ .|..-||..|+. +.|......+ . ....||.|+..
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~---~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLS---EWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGH---HHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHH---HHHHHcccCCeeecccccCCcCCCCe
Confidence 488888765434445567787 899999999944 3333322221 1 23579999853
No 64
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=80.90 E-value=0.79 Score=39.89 Aligned_cols=50 Identities=24% Similarity=0.730 Sum_probs=29.9
Q ss_pred ccccccccccccCCc-----cCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENEGC-----ERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs-----~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
++.|.||...-.+.. ...+-.+.=..|+..||..|+..|... ...||-|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-------~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-------NNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-------SSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-------CCcCCCCC
Confidence 346999987542111 111223333479999999999887653 23787774
No 65
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=78.61 E-value=1.4 Score=50.38 Aligned_cols=37 Identities=27% Similarity=0.657 Sum_probs=29.7
Q ss_pred CccCCCCCccccccccCC---CCCceeCCCCCCccccccCC
Q 004423 83 SWKCPSCRICEICRRTGD---PNKFMFCRRCDAAYHCYCQH 120 (754)
Q Consensus 83 ~W~Cp~Ck~C~vC~~sgd---~~kLL~Cd~C~raYH~~CL~ 120 (754)
+=.|..| .|.+|.+... +..++.|+.|+.|-|..|.-
T Consensus 123 ~gFC~~C-~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCAL 162 (446)
T PF07227_consen 123 PGFCRRC-MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCAL 162 (446)
T ss_pred CCccccC-CccccCCcccCCCCeeEEeccCCCceehhhhhc
Confidence 3468999 8999987532 23589999999999999965
No 66
>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton]
Probab=77.53 E-value=0.87 Score=48.75 Aligned_cols=72 Identities=22% Similarity=0.538 Sum_probs=40.4
Q ss_pred CCccccccCCCC--Ccc---CCCCCcccCCCcc---cCCCCC---CCCC---CCCccccccCccccCCCccccc------
Q 004423 111 DAAYHCYCQHPP--HKN---VSSGPYLCPKHTK---CHSCGS---NVPG---NGLSVRWFLGYTCCDACGRLFV------ 170 (754)
Q Consensus 111 ~raYH~~CL~Pp--l~~---vp~g~W~CP~C~~---C~~Cg~---~~pg---k~~s~RW~~~~slC~~C~~lf~------ 170 (754)
...||..|..-. ++. .-.+..+|+.|.- |..|+. ...+ ......|+..-..|..|.+-|-
T Consensus 159 yH~yHFkCt~C~keL~sdaRevk~eLyClrChD~mgipiCgaC~rpIeervi~amgKhWHveHFvCa~CekPFlGHrHYE 238 (332)
T KOG2272|consen 159 YHPYHFKCTTCGKELTSDAREVKGELYCLRCHDKMGIPICGACRRPIEERVIFAMGKHWHVEHFVCAKCEKPFLGHRHYE 238 (332)
T ss_pred CCccceecccccccccchhhhhccceeccccccccCCcccccccCchHHHHHHHhccccchhheeehhcCCcccchhhhh
Confidence 356777776532 221 1256788888753 233332 1111 1124568888888877765432
Q ss_pred --------------CCccCccccccc
Q 004423 171 --------------KGNYCPVCLKVY 182 (754)
Q Consensus 171 --------------KgnyCpVC~K~Y 182 (754)
-|+.|++|.+..
T Consensus 239 kkGlaYCe~h~~qLfG~~CF~C~~~i 264 (332)
T KOG2272|consen 239 KKGLAYCETHYHQLFGNLCFICNRVI 264 (332)
T ss_pred hcCchhHHHHHHHHhhhhheecCCcc
Confidence 345599998764
No 67
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=76.87 E-value=7.5 Score=31.18 Aligned_cols=44 Identities=23% Similarity=0.505 Sum_probs=35.4
Q ss_pred ccceEEEEecCCCceeeeeeEEe-ecCeeEEEEEecCCcccceecCcee
Q 004423 694 IGKRVEVHQQSDNSWHKGVVTDT-VEGTSTLSITLDDSRVKTLELGKQG 741 (754)
Q Consensus 694 ~~krvev~~~sd~~w~~g~v~~~-~~~~~~~~v~~d~g~~~~~~~gk~~ 741 (754)
|||+|.|.. .++.+ .|++.+| -.|. |.|.++||..+++--|-=.
T Consensus 2 lG~~V~v~~-~~~~~-~G~~~gId~~G~--L~v~~~~g~~~~i~sGdv~ 46 (48)
T PF02237_consen 2 LGQEVRVET-GDGEI-EGIAEGIDDDGA--LLVRTEDGSIRTISSGDVS 46 (48)
T ss_dssp TTSEEEEEE-TSCEE-EEEEEEEETTSE--EEEEETTEEEEEESSSEEE
T ss_pred CCCEEEEEE-CCeEE-EEEEEEECCCCE--EEEEECCCCEEEEEEEEEE
Confidence 799999999 44444 9999999 6677 9999999988877666433
No 68
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=75.22 E-value=1.5 Score=36.85 Aligned_cols=31 Identities=26% Similarity=0.721 Sum_probs=25.8
Q ss_pred ccccccccCC-CCCceeCCCCCCccccccCCC
Q 004423 91 ICEICRRTGD-PNKFMFCRRCDAAYHCYCQHP 121 (754)
Q Consensus 91 ~C~vC~~sgd-~~kLL~Cd~C~raYH~~CL~P 121 (754)
.|.+|+..-. .+.+++|..|+.-||..|...
T Consensus 7 ~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 7 KCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 6788887664 457999999999999999964
No 69
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=73.82 E-value=3.4 Score=49.28 Aligned_cols=81 Identities=22% Similarity=0.535 Sum_probs=53.7
Q ss_pred ccccccccccCCccCCCceEEeCcCCCccchhccCCCcccccc------------------CC----CCCccCCCCC-cc
Q 004423 36 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDL------------------FH----WSSWKCPSCR-IC 92 (754)
Q Consensus 36 ~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~------------------v~----~~~W~Cp~Ck-~C 92 (754)
+|.+|.... .-.-+-|+.|+..+|..|........+. .+ +..-.|..|. +|
T Consensus 46 ~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~c~~c~~~c 119 (634)
T KOG1169|consen 46 VCCVCLWSE------MAPSVDCDVDGGVSHEECVSGAASDCPLLVLLGFENQRHKTDGDHVWRPKHLWKPAYCFVCPKSC 119 (634)
T ss_pred hhhhhhhcc------cccccceeccccchhhhhhcccccchHHHHHHHhhhhhhhccCceeccCCCCCCCceEEeccccc
Confidence 899998732 1256889999999999999765321000 00 1222355553 56
Q ss_pred ccccccCCCCCceeCCCCCCccccccCCCCCc
Q 004423 93 EICRRTGDPNKFMFCRRCDAAYHCYCQHPPHK 124 (754)
Q Consensus 93 ~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~ 124 (754)
.+|+.... ..++|+.|+.-.|..|+....+
T Consensus 120 ~~~~~~~~--~g~~C~~C~~~vh~~C~~~~~~ 149 (634)
T KOG1169|consen 120 GSCGVGIK--QGLCCDWCGRTVHERCVRRADP 149 (634)
T ss_pred cchhhccc--CceeeccccchHHHHHHhhcCc
Confidence 66665432 4799999999999999986543
No 70
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=72.66 E-value=1.8 Score=39.40 Aligned_cols=52 Identities=23% Similarity=0.657 Sum_probs=31.3
Q ss_pred ccccccccccccC-----Cc-cCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENE-----GC-ERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~-----gs-~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
++.|.||...-++ .. +..-.++++. |+..||.-|+..|..... ..=.||-|+
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~~----~~~~CPmCR 78 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQS----SKGQCPMCR 78 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeecc-CccHHHHHHHHHHHcccc----CCCCCCCcC
Confidence 4678887764321 00 1112455555 999999999998875321 223677664
No 71
>PHA02929 N1R/p28-like protein; Provisional
Probab=72.36 E-value=2.1 Score=45.58 Aligned_cols=41 Identities=12% Similarity=0.400 Sum_probs=25.9
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
+..|.+|.............+..=..|++.||..|+..|..
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~ 214 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK 214 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh
Confidence 46999999853211000011233358999999999998764
No 72
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=72.05 E-value=2.8 Score=46.43 Aligned_cols=47 Identities=23% Similarity=0.547 Sum_probs=32.5
Q ss_pred CCccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCC
Q 004423 171 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 230 (754)
Q Consensus 171 KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~ 230 (754)
..++|+.|+... .+..-++|..|...|-.+|+-...+- --.||.|..
T Consensus 329 ~~~~Cf~C~~~~---~~~~~y~C~~Ck~~FCldCDv~iHes----------Lh~CpgCeh 375 (378)
T KOG2807|consen 329 GSRFCFACQGEL---LSSGRYRCESCKNVFCLDCDVFIHES----------LHNCPGCEH 375 (378)
T ss_pred CCcceeeecccc---CCCCcEEchhccceeeccchHHHHhh----------hhcCCCcCC
Confidence 445699994322 23445889999999999998743331 367999973
No 73
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=71.43 E-value=8.2 Score=33.02 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=26.2
Q ss_pred ccceEEEEecC---CCceeeeeeEEeecCeeEEEEEecC
Q 004423 694 IGKRVEVHQQS---DNSWHKGVVTDTVEGTSTLSITLDD 729 (754)
Q Consensus 694 ~~krvev~~~s---d~~w~~g~v~~~~~~~~~~~v~~d~ 729 (754)
.|-+|||..-. .++|..|+|....... ++.|.|+|
T Consensus 3 ~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~-~~~V~Y~~ 40 (68)
T PF05641_consen 3 KGDEVEVSSDEDGFRGAWFPATVLKENGDD-KYLVEYDD 40 (68)
T ss_dssp TT-EEEEEE-SBTT--EEEEEEEEEEETT--EEEEEETT
T ss_pred CCCEEEEEEcCCCCCcEEEEEEEEEeCCCc-EEEEEECC
Confidence 68899998755 5699999999998884 59999953
No 74
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=69.65 E-value=2.9 Score=48.56 Aligned_cols=20 Identities=20% Similarity=0.585 Sum_probs=13.6
Q ss_pred CceEEeCcCCCccchhccCC
Q 004423 52 RRMLSCKSCGKKYHRNCLKN 71 (754)
Q Consensus 52 eeLL~Cd~C~rsYH~~CL~p 71 (754)
+.|++|..|.+-=...|+..
T Consensus 3 ~~L~fC~~C~~irc~~c~~~ 22 (483)
T PF05502_consen 3 EELYFCEHCHKIRCPRCVSE 22 (483)
T ss_pred ccceecccccccCChhhccc
Confidence 46777777776666666654
No 75
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=69.62 E-value=4.2 Score=32.55 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=26.7
Q ss_pred cCCccCccccccccCCCCCCceeccCcCCeecccCCCC
Q 004423 170 VKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI 207 (754)
Q Consensus 170 ~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~L 207 (754)
....+|.+|.+.... ....-+.|..|...+|..|...
T Consensus 9 ~~~~~C~~C~~~i~g-~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWG-LGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp SSTEB-TTSSSBECS-SSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCCCcccCcccCC-CCCCeEEECCCCChHhhhhhhh
Confidence 455678888877633 4556789999999999999774
No 76
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=69.14 E-value=3.7 Score=50.91 Aligned_cols=46 Identities=37% Similarity=1.011 Sum_probs=40.8
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
.|..|.+...+ .++.|+.|...||..|..++++.++.+.|.|+.|.
T Consensus 157 ~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (904)
T KOG1246|consen 157 QCNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCI 202 (904)
T ss_pred hhhccccCCCc-cceecccccCcccccccCCCCCcCCcCcccCCccc
Confidence 67788877766 55599999999999999999999999999999886
No 77
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=68.31 E-value=1.3 Score=52.47 Aligned_cols=46 Identities=28% Similarity=0.700 Sum_probs=33.6
Q ss_pred CCCCC----ccccccccCCCC-----CceeCCCCCCccccccCCCCCccCCCCCcccCCCcc
Q 004423 86 CPSCR----ICEICRRTGDPN-----KFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (754)
Q Consensus 86 Cp~Ck----~C~vC~~sgd~~-----kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~ 138 (754)
|..|. +|.+|....-.. ....|..|..+||..|+.-.. -.||.|.+
T Consensus 504 C~lC~~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r~s-------~~CPrC~R 558 (580)
T KOG1829|consen 504 CDLCTGKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRRKS-------PCCPRCER 558 (580)
T ss_pred chhhccCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhccC-------CCCCchHH
Confidence 88887 899995433222 358899999999999998422 22888864
No 78
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=67.40 E-value=2.3 Score=31.33 Aligned_cols=42 Identities=29% Similarity=0.842 Sum_probs=27.9
Q ss_pred ccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 36 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 36 ~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
.|.+|...- ...+.-..|+..||..|+..+... ....||.|+
T Consensus 1 ~C~iC~~~~-------~~~~~~~~C~H~~c~~C~~~~~~~------~~~~Cp~C~ 42 (45)
T cd00162 1 ECPICLEEF-------REPVVLLPCGHVFCRSCIDKWLKS------GKNTCPLCR 42 (45)
T ss_pred CCCcCchhh-------hCceEecCCCChhcHHHHHHHHHh------CcCCCCCCC
Confidence 377787643 144455579999999999876542 345677764
No 79
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=65.50 E-value=1.5 Score=52.18 Aligned_cols=100 Identities=19% Similarity=0.319 Sum_probs=55.0
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCcccC-CCCCCCCCCCCccccccC----ccccCCC
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCH-SCGSNVPGNGLSVRWFLG----YTCCDAC 165 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~C~-~Cg~~~pgk~~s~RW~~~----~slC~~C 165 (754)
+|.+|.. ......+.|+.|+..+|..|..+.....+ |..|. .+.... ...-.+-|... ..+|..|
T Consensus 46 ~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~s~~~--------~~~~~~~~~~~~-k~~~~~~~~~~~~~~~~~c~~c 115 (634)
T KOG1169|consen 46 VCCVCLW-SEMAPSVDCDVDGGVSHEECVSGAASDCP--------LLVLLGFENQRH-KTDGDHVWRPKHLWKPAYCFVC 115 (634)
T ss_pred hhhhhhh-cccccccceeccccchhhhhhcccccchH--------HHHHHHhhhhhh-hccCceeccCCCCCCCceEEec
Confidence 5666665 22335789999999999999986443211 11111 111100 00011122221 2233333
Q ss_pred cccccCCccCccccccccCCCCCCceeccCcCCeecccCCCCChHH
Q 004423 166 GRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEK 211 (754)
Q Consensus 166 ~~lf~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ 211 (754)
. ++|.+|.- ...+.++|+.|..-+|..|....+++
T Consensus 116 ~------~~c~~~~~-----~~~~g~~C~~C~~~vh~~C~~~~~~~ 150 (634)
T KOG1169|consen 116 P------KSCGSCGV-----GIKQGLCCDWCGRTVHERCVRRADPE 150 (634)
T ss_pred c------ccccchhh-----cccCceeeccccchHHHHHHhhcCcc
Confidence 3 34554542 23667999999999999998765554
No 80
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=64.64 E-value=6.4 Score=33.99 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=22.9
Q ss_pred eeeeEEeecCeeEEEEEecCCcccceecC
Q 004423 710 KGVVTDTVEGTSTLSITLDDSRVKTLELG 738 (754)
Q Consensus 710 ~g~v~~~~~~~~~~~v~~d~g~~~~~~~g 738 (754)
.|+|+.|--.+ ++|+||||+.-+|-.+
T Consensus 6 eG~I~~id~~~--~titLdDGksy~lp~e 32 (61)
T PF07076_consen 6 EGTIKSIDPET--MTITLDDGKSYKLPEE 32 (61)
T ss_pred eEEEEEEcCCc--eEEEecCCCEEECCCc
Confidence 69999998888 9999999998766443
No 81
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=64.32 E-value=2.2 Score=37.52 Aligned_cols=28 Identities=29% Similarity=0.897 Sum_probs=23.8
Q ss_pred cccccccc-CCCCCceeCC--CCCCccccccCCC
Q 004423 91 ICEICRRT-GDPNKFMFCR--RCDAAYHCYCQHP 121 (754)
Q Consensus 91 ~C~vC~~s-gd~~kLL~Cd--~C~raYH~~CL~P 121 (754)
.|.+|++. | -.+.|. .|...||..|...
T Consensus 38 ~C~~C~~~~G---a~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 38 KCSICKKKGG---ACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCcCCCCCCC---eEEEEeCCCCCcEEChHHHcc
Confidence 78888888 6 678888 5999999999874
No 82
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=62.40 E-value=4.8 Score=37.75 Aligned_cols=59 Identities=32% Similarity=0.754 Sum_probs=40.4
Q ss_pred cccccccccccCCccCCCceEEe------CcC---CCccchhccCCCcc--ccccCCCCCccCCCCC---ccccccccC
Q 004423 35 VMCRLCFVGENEGCERARRMLSC------KSC---GKKYHRNCLKNWAQ--NRDLFHWSSWKCPSCR---ICEICRRTG 99 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~C------d~C---~rsYH~~CL~p~~e--~~~~v~~~~W~Cp~Ck---~C~vC~~sg 99 (754)
..|..|..... +....| ..| ...|-..||-.... ..+......|.||.|+ .|..|.+..
T Consensus 8 ~~CHqCrqKt~------~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk~ 80 (105)
T PF10497_consen 8 KTCHQCRQKTL------DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRKR 80 (105)
T ss_pred CCchhhcCCCC------CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhccC
Confidence 48999988542 345667 567 89999999876432 1122345789999998 677776543
No 83
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=62.25 E-value=4.4 Score=42.02 Aligned_cols=33 Identities=18% Similarity=0.642 Sum_probs=24.3
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCc
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWA 73 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~ 73 (754)
.+..|.||...-. +- .-..|+..|+..|+..|.
T Consensus 17 ~~~~CpICld~~~-------dP-VvT~CGH~FC~~CI~~wl 49 (193)
T PLN03208 17 GDFDCNICLDQVR-------DP-VVTLCGHLFCWPCIHKWT 49 (193)
T ss_pred CccCCccCCCcCC-------Cc-EEcCCCchhHHHHHHHHH
Confidence 3468999988542 22 226899999999998764
No 84
>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]
Probab=60.70 E-value=6.8 Score=46.39 Aligned_cols=16 Identities=19% Similarity=0.740 Sum_probs=10.2
Q ss_pred ccccccCccccCCCcc
Q 004423 152 SVRWFLGYTCCDACGR 167 (754)
Q Consensus 152 s~RW~~~~slC~~C~~ 167 (754)
..+|+.....|..|..
T Consensus 153 d~qwhv~cfkc~~c~~ 168 (670)
T KOG1044|consen 153 DKQWHVSCFKCKSCSA 168 (670)
T ss_pred ccceeeeeeehhhhcc
Confidence 4567776666666653
No 85
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=59.73 E-value=5.1 Score=35.25 Aligned_cols=32 Identities=19% Similarity=0.693 Sum_probs=27.2
Q ss_pred ccccccccccc-ccCCccCCCceEEeC--cCCCccchhccCCC
Q 004423 33 TNVMCRLCFVG-ENEGCERARRMLSCK--SCGKKYHRNCLKNW 72 (754)
Q Consensus 33 ~d~~C~vC~~g-G~~gs~~~eeLL~Cd--~C~rsYH~~CL~p~ 72 (754)
....|.+|... | -.|.|. .|.+.||+.|....
T Consensus 35 ~~~~C~~C~~~~G--------a~i~C~~~~C~~~fH~~CA~~~ 69 (90)
T PF13771_consen 35 RKLKCSICKKKGG--------ACIGCSHPGCSRSFHVPCARKA 69 (90)
T ss_pred hCCCCcCCCCCCC--------eEEEEeCCCCCcEEChHHHccC
Confidence 44699999987 5 788997 79999999999764
No 86
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=59.51 E-value=7.7 Score=45.58 Aligned_cols=54 Identities=24% Similarity=0.416 Sum_probs=41.9
Q ss_pred CCCccccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCCcc
Q 004423 29 GQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRIC 92 (754)
Q Consensus 29 ~~s~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck~C 92 (754)
...+-+.+|+-|...| ..+.|..|.+.||..|+.+..+.+. ....|.|+.|..|
T Consensus 55 ~~~N~d~~cfechlpg--------~vl~c~vc~Rs~h~~c~sp~~q~r~--~s~p~~~p~p~s~ 108 (588)
T KOG3612|consen 55 PSSNIDPFCFECHLPG--------AVLKCIVCHRSFHENCQSPDPQKRN--YSVPSDKPQPYSF 108 (588)
T ss_pred cccCCCcccccccCCc--------ceeeeehhhccccccccCcchhhcc--ccccccCCccccc
Confidence 3344567999999977 8899999999999999998766443 3467888777544
No 87
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=57.78 E-value=2.9 Score=47.03 Aligned_cols=54 Identities=31% Similarity=0.740 Sum_probs=33.3
Q ss_pred Cccccccccccccc-cCC----ccCCCceEEe-CcCCCccchhccCCCccccccCCCCCccCCCCCcccccccc
Q 004423 31 SNTNVMCRLCFVGE-NEG----CERARRMLSC-KSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRT 98 (754)
Q Consensus 31 s~~d~~C~vC~~gG-~~g----s~~~eeLL~C-d~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck~C~vC~~s 98 (754)
.+.|..|.+|-++. ..+ .++. ++-.= -.||.-+|..||..|.+.. .+|.+|+.+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~-~~~pKrLpCGHilHl~CLknW~ERq-------------QTCPICr~p 343 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGL-DMTPKRLPCGHILHLHCLKNWLERQ-------------QTCPICRRP 343 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccc-cCCcccccccceeeHHHHHHHHHhc-------------cCCCcccCc
Confidence 34567999999862 111 0111 11111 2799999999999986632 367777765
No 88
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=57.64 E-value=6.3 Score=36.10 Aligned_cols=33 Identities=18% Similarity=0.623 Sum_probs=27.2
Q ss_pred cccccccccccccCCccCCCceEEeCc--CCCccchhccCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKS--CGKKYHRNCLKNW 72 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~--C~rsYH~~CL~p~ 72 (754)
....|.+|...+ ..++.|.. |...||+.|....
T Consensus 54 ~~~~C~iC~~~~-------G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKSG-------GACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCCC-------ceeEEcCCCCCCcCCCHHHHHHC
Confidence 457999999853 17999996 9999999999753
No 89
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=57.60 E-value=9.2 Score=39.45 Aligned_cols=37 Identities=16% Similarity=0.564 Sum_probs=27.6
Q ss_pred cccccccccccCCccCCCceEEeCcCCCccchhccCC
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKN 71 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p 71 (754)
-+|.+|...+..---+.+....|..|...||..|...
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~ 189 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK 189 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC
Confidence 3788887765333233457899999999999999974
No 90
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=57.22 E-value=23 Score=31.25 Aligned_cols=56 Identities=14% Similarity=0.310 Sum_probs=36.9
Q ss_pred ccccccceEEEEecCCCceeeeeeEEeecCeeEEEEE-ecCCcccceecCceeeEeeecc
Q 004423 690 GKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSIT-LDDSRVKTLELGKQGVRFVPQK 748 (754)
Q Consensus 690 g~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~-~d~g~~~~~~~gk~~vr~~~~~ 748 (754)
-...+|.-+=+-...|+.|+-|+|+....... +.|. +|-|.++++.. ..+|.+|..
T Consensus 50 ~~~~~~~~~~~~~~~~~~w~Ra~I~~~~~~~~-~~V~~iD~G~~~~v~~--~~l~~l~~~ 106 (121)
T PF00567_consen 50 PESNPGEGCLCVVSEDGRWYRAVITVDIDENQ-YKVFLIDYGNTEKVSA--SDLRPLPPE 106 (121)
T ss_dssp ST--TTEEEEEEETTTSEEEEEEEEEEECTTE-EEEEETTTTEEEEEEG--GGEEE--HH
T ss_pred cccccCCEEEEEEecCCceeeEEEEEecccce-eEEEEEecCceEEEcH--HHhhhhCHH
Confidence 34557777777888999999999944443332 5554 58899988654 468888843
No 91
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=57.16 E-value=3.9 Score=47.35 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=54.6
Q ss_pred CCccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC----CCCCchHHHHHHhh
Q 004423 171 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC----YQVRDLEDAVRELW 246 (754)
Q Consensus 171 KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~----~qIk~lkda~~r~W 246 (754)
...+|++|.+ ++.++.|+.|...+|..|.+...+ .-.|.|.+|+... ..+.|...+.+.||
T Consensus 88 ~~~~c~vc~~------ggs~v~~~s~~~~~~r~c~~~~~~---------~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~ 152 (463)
T KOG1081|consen 88 EPSECFVCFK------GGSLVTCKSRIQAPHRKCKPAQLE---------KCSKRCTDCRAFKKREVGDLVWSKVGEYPWW 152 (463)
T ss_pred CcchhccccC------CCccceeccccccccccCcCccCc---------ccccCCcceeeeccccceeEEeEEcCccccc
Confidence 4467999975 678899999999999999885433 2467777777643 34778888999999
Q ss_pred cccccccHHHH
Q 004423 247 RRKDMADKDLI 257 (754)
Q Consensus 247 rare~~~~dvI 257 (754)
+...+.+.-+.
T Consensus 153 ~c~vc~~~~~~ 163 (463)
T KOG1081|consen 153 PCMVCHDPLLP 163 (463)
T ss_pred ccceecCcccc
Confidence 98777766444
No 92
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=57.04 E-value=9.8 Score=45.30 Aligned_cols=33 Identities=33% Similarity=0.715 Sum_probs=27.1
Q ss_pred CCCccCCCCC---------ccccccccCCCCCceeCCCCCCcccc
Q 004423 81 WSSWKCPSCR---------ICEICRRTGDPNKFMFCRRCDAAYHC 116 (754)
Q Consensus 81 ~~~W~Cp~Ck---------~C~vC~~sgd~~kLL~Cd~C~raYH~ 116 (754)
...--|+.|+ .|..|+-.+ +.+.|+.|+..++.
T Consensus 51 ~~~~pc~~c~gkG~V~v~~~c~~c~G~g---kv~~c~~cG~~~~~ 92 (715)
T COG1107 51 SFEIPCPKCRGKGTVTVYDTCPECGGTG---KVLTCDICGDIIVP 92 (715)
T ss_pred cCCCCCCeeccceeEEEEeecccCCCce---eEEeeccccceecC
Confidence 3455799998 899998887 89999999988763
No 93
>PRK14637 hypothetical protein; Provisional
Probab=55.36 E-value=26 Score=34.88 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=32.5
Q ss_pred ccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccceec
Q 004423 692 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLEL 737 (754)
Q Consensus 692 da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~~~ 737 (754)
-+||+.|+|.+...+.|.+|++.+|-+++ +.+.. +|....+.+
T Consensus 95 r~~G~~V~V~l~~~~~~~~G~L~~~~d~~--v~l~~-~~~~~~i~~ 137 (151)
T PRK14637 95 IFVGETVKVWFECTGQWQVGTIAEADETC--LVLTS-DGVPVTIPY 137 (151)
T ss_pred HhCCCEEEEEECCCCcEEEEEEEEEeCCE--EEEEE-CCEEEEEEH
Confidence 47999999988667899999999998887 55554 454444444
No 94
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.56 E-value=6.4 Score=42.86 Aligned_cols=41 Identities=17% Similarity=0.519 Sum_probs=25.8
Q ss_pred ccccccccccccccCCccCCCceE---EeCcCCCccchhccCCCc
Q 004423 32 NTNVMCRLCFVGENEGCERARRML---SCKSCGKKYHRNCLKNWA 73 (754)
Q Consensus 32 ~~d~~C~vC~~gG~~gs~~~eeLL---~Cd~C~rsYH~~CL~p~~ 73 (754)
.++.+|.+|+..-.. +...+.++ .=-.|+..||-+|+.-|-
T Consensus 222 l~d~vCaVCg~~~~~-s~~eegvienty~LsCnHvFHEfCIrGWc 265 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDV-SVDEEGVIENTYKLSCNHVFHEFCIRGWC 265 (328)
T ss_pred CCcchhHhhcchhee-ecchhhhhhhheeeecccchHHHhhhhhe
Confidence 455699999875421 11111222 222899999999998763
No 95
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=53.51 E-value=4.4 Score=28.67 Aligned_cols=30 Identities=23% Similarity=0.851 Sum_probs=20.6
Q ss_pred cccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 37 CRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 37 C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
|.+|.... ....-..|+..||..|+..+..
T Consensus 1 C~iC~~~~--------~~~~~~~C~H~~c~~C~~~~~~ 30 (39)
T smart00184 1 CPICLEEL--------KDPVVLPCGHTFCRSCIRKWLK 30 (39)
T ss_pred CCcCccCC--------CCcEEecCCChHHHHHHHHHHH
Confidence 56676642 3334457999999999987644
No 96
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=53.34 E-value=25 Score=33.83 Aligned_cols=40 Identities=20% Similarity=0.439 Sum_probs=34.0
Q ss_pred cceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccce
Q 004423 695 GKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTL 735 (754)
Q Consensus 695 ~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~ 735 (754)
|.+|-.-+..||-||.|||...+ ...++.|.+++|+...+
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~-~~~~~lV~f~~~~~~~v 40 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV-SSGQFLVEFDDGDTQEV 40 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc-CCCEEEEEECCCCEEEe
Confidence 67888999999999999999997 44469999988887654
No 97
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=51.35 E-value=10 Score=46.02 Aligned_cols=46 Identities=22% Similarity=0.543 Sum_probs=28.6
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCcc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~ 138 (754)
-|.+|+-+-++ --+.|..|..-| +.|+....+-...-.|.||.|..
T Consensus 1119 dc~~cg~~i~~-~~~~c~ec~~kf-P~CiasG~pIt~~~fWlC~~CkH 1164 (1189)
T KOG2041|consen 1119 DCSVCGAKIDP-YDLQCSECQTKF-PVCIASGRPITDNIFWLCPRCKH 1164 (1189)
T ss_pred eeeecCCcCCc-cCCCChhhcCcC-ceeeccCCccccceEEEcccccc
Confidence 56777765544 356788886655 56766433333334799998764
No 98
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=49.41 E-value=8.9 Score=42.87 Aligned_cols=39 Identities=26% Similarity=0.691 Sum_probs=31.0
Q ss_pred CceeccCcCCeecccC--CCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 189 PMVCCDVCQRWVHCQC--DGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 189 ~MLqCDsC~~wFH~eC--d~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
-|++|+.|..|||.+| +++...+ .+....|+|..|....
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~~~e-----~p~~~~~~c~~c~~~~ 114 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTAEKE-----APKEDPKVCDECKEAQ 114 (345)
T ss_pred hhhccccccccccccccccCchhhc-----CCccccccccccchhh
Confidence 6899999999999999 8865432 3456789999998654
No 99
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=48.61 E-value=11 Score=41.73 Aligned_cols=19 Identities=21% Similarity=0.641 Sum_probs=17.0
Q ss_pred CceeCCCCCCccc-cccCCC
Q 004423 103 KFMFCRRCDAAYH-CYCQHP 121 (754)
Q Consensus 103 kLL~Cd~C~raYH-~~CL~P 121 (754)
.|++|.-|.-||| ..|++.
T Consensus 147 ~m~QC~iCEDWFHce~c~~~ 166 (345)
T KOG2752|consen 147 EMLQCVICEDWFHCEGCMQA 166 (345)
T ss_pred eeeeEEeccchhcccccCcc
Confidence 6999999999999 788874
No 100
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=45.81 E-value=20 Score=41.90 Aligned_cols=31 Identities=23% Similarity=0.586 Sum_probs=18.8
Q ss_pred CceeCCCCCCccccccCCCCCccCCCCCcccCCCcc
Q 004423 103 KFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (754)
Q Consensus 103 kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~ 138 (754)
.|.+|..|...-...|+..- ...||||.|..
T Consensus 4 ~L~fC~~C~~irc~~c~~~E-----i~~~yCp~CL~ 34 (483)
T PF05502_consen 4 ELYFCEHCHKIRCPRCVSEE-----IDSYYCPNCLF 34 (483)
T ss_pred cceecccccccCChhhcccc-----cceeECccccc
Confidence 45666666665555666532 24688888753
No 101
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=45.52 E-value=6 Score=32.17 Aligned_cols=37 Identities=27% Similarity=0.802 Sum_probs=22.3
Q ss_pred ccccccccccCCccCCCceE-EeC--cCCCccchhccCCCcccc
Q 004423 36 MCRLCFVGENEGCERARRML-SCK--SCGKKYHRNCLKNWAQNR 76 (754)
Q Consensus 36 ~C~vC~~gG~~gs~~~eeLL-~Cd--~C~rsYH~~CL~p~~e~~ 76 (754)
+|.+|...+.+ .+.|+ .|. +--+.+|..||..|....
T Consensus 1 ~CrIC~~~~~~----~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~ 40 (49)
T smart00744 1 ICRICHDEGDE----GDPLVSPCRCKGSLKYVHQECLERWINES 40 (49)
T ss_pred CccCCCCCCCC----CCeeEeccccCCchhHHHHHHHHHHHHHc
Confidence 58899873221 12333 232 223789999999987543
No 102
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.11 E-value=23 Score=41.41 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=14.8
Q ss_pred HHHHhcCCCCccccccCCCCCCccc
Q 004423 259 SLRAAAGLPTEDEIFSISPYSDDEE 283 (754)
Q Consensus 259 slRaa~GLp~~Eei~~~~p~sdD~~ 283 (754)
..|...++|+.--+..+.-...+++
T Consensus 403 ~~R~~~~~PPf~~l~~i~~~~~~~~ 427 (505)
T TIGR00595 403 AQRRALNYPPFTRLIRLIFRGKNEE 427 (505)
T ss_pred HHHHHcCCCchhcEEEEEEecCCHH
Confidence 4566777887766655544444443
No 103
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=43.63 E-value=7.6 Score=28.26 Aligned_cols=29 Identities=31% Similarity=0.693 Sum_probs=12.4
Q ss_pred ccccccccCCCCCceeCCCCCCccccccC
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQ 119 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL 119 (754)
.|.+|+.+......-.|..|+-..|..|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 57888888765567899999999998873
No 104
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=43.28 E-value=12 Score=28.68 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=25.1
Q ss_pred CCccCccccccccCCCCCCceeccCcCCeecccCCC
Q 004423 171 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 206 (754)
Q Consensus 171 KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~ 206 (754)
...+|.+|.+...... +.+.|..|...+|..|..
T Consensus 10 ~~~~C~~C~~~i~~~~--~~~~C~~C~~~~H~~C~~ 43 (49)
T smart00109 10 KPTKCCVCRKSIWGSF--QGLRCSWCKVKCHKKCAE 43 (49)
T ss_pred CCCCccccccccCcCC--CCcCCCCCCchHHHHHHh
Confidence 3457888877654322 468899999999999965
No 105
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=42.13 E-value=14 Score=28.60 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=26.0
Q ss_pred CCccCccccccccCCCCCCceeccCcCCeecccCCCC
Q 004423 171 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI 207 (754)
Q Consensus 171 KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~L 207 (754)
...+|.+|.+..... ...-+.|..|...+|..|...
T Consensus 10 ~~~~C~~C~~~i~~~-~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 10 KPTFCDVCRKSIWGL-FKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred CCCChhhcchhhhcc-ccceeEcCCCCCchhhhhhcc
Confidence 345678887765432 245678999999999999763
No 106
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=41.98 E-value=25 Score=40.83 Aligned_cols=32 Identities=31% Similarity=0.626 Sum_probs=27.1
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNW 72 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~ 72 (754)
..++|++|..+| .++.|+.|..++|..|....
T Consensus 88 ~~~~c~vc~~gg--------s~v~~~s~~~~~~r~c~~~~ 119 (463)
T KOG1081|consen 88 EPSECFVCFKGG--------SLVTCKSRIQAPHRKCKPAQ 119 (463)
T ss_pred CcchhccccCCC--------ccceeccccccccccCcCcc
Confidence 457999999988 88999988888888888764
No 107
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.81 E-value=14 Score=41.01 Aligned_cols=45 Identities=31% Similarity=0.764 Sum_probs=32.1
Q ss_pred cccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
.-|.+|-+.--.+ +-+.-..|.+-||..|+..|.. .+.-.||-|+
T Consensus 324 veCaICms~fiK~-----d~~~vlPC~H~FH~~Cv~kW~~------~y~~~CPvCr 368 (374)
T COG5540 324 VECAICMSNFIKN-----DRLRVLPCDHRFHVGCVDKWLL------GYSNKCPVCR 368 (374)
T ss_pred ceEEEEhhhhccc-----ceEEEeccCceechhHHHHHHh------hhcccCCccC
Confidence 5899998854211 4477789999999999998754 2445666663
No 108
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=41.79 E-value=43 Score=32.40 Aligned_cols=44 Identities=18% Similarity=0.374 Sum_probs=30.6
Q ss_pred ccccceEEEEec---CCCceeeeeeEEeecCeeEEEEEecCCc-ccceec
Q 004423 692 DAIGKRVEVHQQ---SDNSWHKGVVTDTVEGTSTLSITLDDSR-VKTLEL 737 (754)
Q Consensus 692 da~~krvev~~~---sd~~w~~g~v~~~~~~~~~~~v~~d~g~-~~~~~~ 737 (754)
.+||+.|+|... ....|..|++.+|-+++ +.++++++. .+++++
T Consensus 84 ~~iG~~v~v~~~~~~~~~~~~~G~L~~~~~~~--i~l~~~~~~~~~~~~I 131 (141)
T PF02576_consen 84 RFIGRKVKVKLKQPVNGRKEFEGKLLEVDEDE--ITLEVEGKGKKKEVEI 131 (141)
T ss_dssp HH-SEEEEEE-SS-SSS-SEEEEEEEEEETTE--EEEEEE-SS-EEEEEE
T ss_pred HhcCCeEEEEEeccCCCcEEEEEEEEEEeCCE--EEEEECCccceEEEEE
Confidence 579999999973 44578999999999998 777877763 234443
No 109
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.71 E-value=8.1 Score=43.87 Aligned_cols=38 Identities=24% Similarity=0.737 Sum_probs=26.8
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccc
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQN 75 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~ 75 (754)
...|.+|.++-. . .+++-.=..||..||..||..|.+.
T Consensus 4 ~A~C~Ic~d~~p-~---~~~l~~i~~cGhifh~~cl~qwfe~ 41 (465)
T KOG0827|consen 4 MAECHICIDGRP-N---DHELGPIGTCGHIFHTTCLTQWFEG 41 (465)
T ss_pred cceeeEeccCCc-c---ccccccccchhhHHHHHHHHHHHcc
Confidence 458999966532 2 2344444579999999999998763
No 110
>PRK11911 flgD flagellar basal body rod modification protein; Provisional
Probab=41.08 E-value=73 Score=31.77 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=29.3
Q ss_pred ccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcc
Q 004423 692 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRV 732 (754)
Q Consensus 692 da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~ 732 (754)
.-|||.|+... .++.=..|+|..|-...+.+.+.++||..
T Consensus 90 ~lIGk~V~~~~-~~g~~~tG~V~sV~~~~~~~~~~v~d~~~ 129 (140)
T PRK11911 90 NFIGKDIKGVS-LNGEVISGKVESVQQTTNGVMLKLKDNDS 129 (140)
T ss_pred HhhCceeEEEe-cCCCEEEEEEEEEEEcCCceEEEEEcCCE
Confidence 45999998544 45556789999887666668888877653
No 111
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=39.97 E-value=1e+02 Score=24.28 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=30.1
Q ss_pred ceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCccccee
Q 004423 696 KRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLE 736 (754)
Q Consensus 696 krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~~ 736 (754)
+.|=|.- ...-|-+|.|...-++. +.|.+.||+..|+.
T Consensus 2 ~~vWvpD-~~egfv~g~I~~~~g~~--vtV~~~~G~~~tv~ 39 (42)
T PF02736_consen 2 KWVWVPD-PKEGFVKGEIIEEEGDK--VTVKTEDGKEVTVK 39 (42)
T ss_dssp TEEEEEE-SSSSEEEEEEEEEESSE--EEEEETTTEEEEEE
T ss_pred CEEEEeC-CcccEEEEEEEEEcCCE--EEEEECCCCEEEeC
Confidence 3444533 45689999999999999 99999999987764
No 112
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=39.18 E-value=22 Score=43.55 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=13.8
Q ss_pred HHHHhcCCCCccccccCCCCCCccc
Q 004423 259 SLRAAAGLPTEDEIFSISPYSDDEE 283 (754)
Q Consensus 259 slRaa~GLp~~Eei~~~~p~sdD~~ 283 (754)
..|+..+||+.--+.-..-.+.+++
T Consensus 625 ~~Rk~~~~PPf~~l~~v~~~~~~~~ 649 (730)
T COG1198 625 AERKELGLPPFSRLAAVIASAKNEE 649 (730)
T ss_pred HHHHhcCCCChhhheeeEecCCCHH
Confidence 4566677776666544444444433
No 113
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.95 E-value=16 Score=41.17 Aligned_cols=45 Identities=20% Similarity=0.480 Sum_probs=33.5
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCcc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~ 138 (754)
.|.+|-+.-..+..|+=--|...||..|++|=+.. .+-+||-|.+
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~---~r~~CPvCK~ 275 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQ---TRTFCPVCKR 275 (348)
T ss_pred eEEEeecccccCCeeeEecCCCchhhccchhhHhh---cCccCCCCCC
Confidence 78899877666666666889999999999975532 2446888763
No 114
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=38.25 E-value=18 Score=41.61 Aligned_cols=41 Identities=29% Similarity=0.612 Sum_probs=32.0
Q ss_pred CCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCCCC
Q 004423 187 STPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQ 234 (754)
Q Consensus 187 gg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~~q 234 (754)
++-|++|+.|..|-|.-|.+.... ..-..|.|..|+.....
T Consensus 98 ~g~~i~c~~c~~Wqh~~C~g~~~~-------~~p~~y~c~~c~~~~~~ 138 (508)
T KOG1844|consen 98 EGLMIQCDWCGRWQHKICCGSFKS-------TKPDKYVCEICTPRNKE 138 (508)
T ss_pred CceeeCCcccCcccCceeeeecCC-------CCchhceeeeecccccc
Confidence 678999999999999999885422 11247999999987554
No 115
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=38.04 E-value=9.2 Score=41.68 Aligned_cols=44 Identities=25% Similarity=0.523 Sum_probs=26.9
Q ss_pred CccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCC
Q 004423 175 CPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 230 (754)
Q Consensus 175 CpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~ 230 (754)
||+|...+.+... .+-=-.|....|..|... | - -.. |.||.|..
T Consensus 161 cPic~e~l~~s~~--~~~~~~CgH~~h~~cf~e----~---~--~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 161 CPICKEYLFLSFE--DAGVLKCGHYMHSRCFEE----M---I--CEG-YTCPICSK 204 (276)
T ss_pred CchhHHHhccccc--cCCccCcccchHHHHHHH----H---h--ccC-CCCCcccc
Confidence 8999877655432 122335677778888431 1 1 123 99999975
No 116
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=37.42 E-value=14 Score=32.74 Aligned_cols=28 Identities=32% Similarity=0.854 Sum_probs=18.5
Q ss_pred cccccCccccCCCcccccCCccCccccc
Q 004423 153 VRWFLGYTCCDACGRLFVKGNYCPVCLK 180 (754)
Q Consensus 153 ~RW~~~~slC~~C~~lf~KgnyCpVC~K 180 (754)
..|..+...|..|...|...-+||-|..
T Consensus 11 L~~~~~~~~C~~C~~~~~~~a~CPdC~~ 38 (70)
T PF07191_consen 11 LEWQGGHYHCEACQKDYKKEAFCPDCGQ 38 (70)
T ss_dssp EEEETTEEEETTT--EEEEEEE-TTT-S
T ss_pred cEEeCCEEECccccccceecccCCCccc
Confidence 4666666778888888888888888864
No 117
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=37.20 E-value=24 Score=42.73 Aligned_cols=9 Identities=22% Similarity=0.486 Sum_probs=3.8
Q ss_pred CCCcccCCC
Q 004423 128 SGPYLCPKH 136 (754)
Q Consensus 128 ~g~W~CP~C 136 (754)
.+.-+|+.|
T Consensus 39 ~~~~fC~~C 47 (645)
T PRK14559 39 VDEAHCPNC 47 (645)
T ss_pred ccccccccc
Confidence 333444443
No 118
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=37.18 E-value=12 Score=28.44 Aligned_cols=39 Identities=26% Similarity=0.857 Sum_probs=26.5
Q ss_pred cccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCC
Q 004423 37 CRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 89 (754)
Q Consensus 37 C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~C 89 (754)
|.+|.+.- .+-+....||..|+..|+..+.+. ...||.|
T Consensus 1 C~iC~~~~-------~~~~~~~~CGH~fC~~C~~~~~~~-------~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDEL-------RDPVVVTPCGHSFCKECIEKYLEK-------NPKCPVC 39 (39)
T ss_dssp ETTTTSB--------SSEEEECTTSEEEEHHHHHHHHHC-------TSB-TTT
T ss_pred CCCCCCcc-------cCcCEECCCCCchhHHHHHHHHHC-------cCCCcCC
Confidence 67786643 255678899999999999875442 2566665
No 119
>PF12773 DZR: Double zinc ribbon
Probab=36.70 E-value=32 Score=27.30 Aligned_cols=9 Identities=33% Similarity=0.988 Sum_probs=4.2
Q ss_pred ceeCCCCCC
Q 004423 104 FMFCRRCDA 112 (754)
Q Consensus 104 LL~Cd~C~r 112 (754)
..+|..|+.
T Consensus 12 ~~fC~~CG~ 20 (50)
T PF12773_consen 12 AKFCPHCGT 20 (50)
T ss_pred ccCChhhcC
Confidence 444555543
No 120
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=36.26 E-value=8.3 Score=41.53 Aligned_cols=59 Identities=27% Similarity=0.512 Sum_probs=22.7
Q ss_pred ccCccccccc-----cCCC--CCCceeccCcCCeec------ccCCCCChHHHhhhcc---CCCCceeCCCCCCC
Q 004423 173 NYCPVCLKVY-----RDSE--STPMVCCDVCQRWVH------CQCDGISDEKYLQFQV---DGNLQYRCPTCRGE 231 (754)
Q Consensus 173 nyCpVC~K~Y-----~Dsd--gg~MLqCDsC~~wFH------~eCd~LsdE~ye~~~~---d~d~~Y~CptCr~~ 231 (754)
.+||||+... ...+ |...+.|..|...+| ..|.+.....|.-+.. +.-..+.|..|.+-
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~Y 247 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGSY 247 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EEE--------SEEEEEETTTTEE
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccch
Confidence 4677776553 1111 446667777776665 2333322222222211 11236889999754
No 121
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=34.95 E-value=23 Score=39.92 Aligned_cols=34 Identities=32% Similarity=0.939 Sum_probs=23.7
Q ss_pred CceEEeCcCCC-ccchhccCCCccccccCCCCCccCCCCC---ccccccccCC
Q 004423 52 RRMLSCKSCGK-KYHRNCLKNWAQNRDLFHWSSWKCPSCR---ICEICRRTGD 100 (754)
Q Consensus 52 eeLL~Cd~C~r-sYH~~CL~p~~e~~~~v~~~~W~Cp~Ck---~C~vC~~sgd 100 (754)
.+-|.|+.|++ .|- ...+.|..|. .|..|...+-
T Consensus 6 He~v~CdgC~k~~~t---------------~rrYkCL~C~DyDlC~sCyen~~ 43 (381)
T KOG1280|consen 6 HEGVSCDGCGKTAFT---------------FRRYKCLRCSDYDLCFSCYENGA 43 (381)
T ss_pred cCCceecccccccee---------------eeeeEeeeecchhHHHHHhhcCC
Confidence 36789999984 332 2445677776 8999988764
No 122
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.85 E-value=55 Score=35.16 Aligned_cols=72 Identities=28% Similarity=0.514 Sum_probs=40.5
Q ss_pred cCCeecccCCCCChHHHhhhccC-CCCceeCCCCCCCCCCCCc----hHHHHHHhhcccccccHHHHHHHHHhcCCCCcc
Q 004423 196 CQRWVHCQCDGISDEKYLQFQVD-GNLQYRCPTCRGECYQVRD----LEDAVRELWRRKDMADKDLIASLRAAAGLPTED 270 (754)
Q Consensus 196 C~~wFH~eCd~LsdE~ye~~~~d-~d~~Y~CptCr~~~~qIk~----lkda~~r~Wrare~~~~dvI~slRaa~GLp~~E 270 (754)
|-..||=.|++ ++...+... -...|.||.|..+-+.-.+ +-++..+. -+...=-|+..|||-+.
T Consensus 70 CyhlfHW~Cln---eraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPva~aLre~--------L~qvNWaRagLGLpll~ 138 (299)
T KOG3970|consen 70 CYHLFHWKCLN---ERAANLPANTAPAGYQCPCCSQEIFPPINLVSPVAEALREQ--------LKQVNWARAGLGLPLLP 138 (299)
T ss_pred hhhhHHHHHhh---HHHhhCCCcCCCCcccCCCCCCccCCCccccchhHHHHHHH--------HHhhhHHhhccCCccch
Confidence 77889999965 333333211 1257999999987554211 22221111 02223347788999888
Q ss_pred ccccCCCC
Q 004423 271 EIFSISPY 278 (754)
Q Consensus 271 ei~~~~p~ 278 (754)
|+-++.|.
T Consensus 139 E~~sp~p~ 146 (299)
T KOG3970|consen 139 ELNSPVPS 146 (299)
T ss_pred hhcCCCCC
Confidence 87555543
No 123
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=34.67 E-value=14 Score=43.96 Aligned_cols=37 Identities=24% Similarity=0.597 Sum_probs=24.5
Q ss_pred cccccccccccCCccCCCceEEeCcCCCccchhccCC
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKN 71 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p 71 (754)
.+|.+|...+...--+.+....|..|+..||..|+.-
T Consensus 512 fiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r 548 (580)
T KOG1829|consen 512 FICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR 548 (580)
T ss_pred eeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc
Confidence 3666774333222222446688999999999999975
No 124
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=34.59 E-value=25 Score=30.59 Aligned_cols=27 Identities=30% Similarity=0.787 Sum_probs=17.5
Q ss_pred ccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCC
Q 004423 193 CDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 229 (754)
Q Consensus 193 CDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr 229 (754)
=..|++.||..|+. .+.. ..-.||.||
T Consensus 47 ~~~C~H~FH~~Ci~----~Wl~------~~~~CP~CR 73 (73)
T PF12678_consen 47 WGPCGHIFHFHCIS----QWLK------QNNTCPLCR 73 (73)
T ss_dssp EETTSEEEEHHHHH----HHHT------TSSB-TTSS
T ss_pred ecccCCCEEHHHHH----HHHh------cCCcCCCCC
Confidence 35699999999953 2221 134999996
No 125
>PRK08330 biotin--protein ligase; Provisional
Probab=33.36 E-value=86 Score=32.78 Aligned_cols=47 Identities=36% Similarity=0.584 Sum_probs=36.9
Q ss_pred ccceEEEEecCCCce-eeeeeEEee-cCeeEEEEEecCCcccceecCceeeEe
Q 004423 694 IGKRVEVHQQSDNSW-HKGVVTDTV-EGTSTLSITLDDSRVKTLELGKQGVRF 744 (754)
Q Consensus 694 ~~krvev~~~sd~~w-~~g~v~~~~-~~~~~~~v~~d~g~~~~~~~gk~~vr~ 744 (754)
+||+|.|.. ++.- ..|++.+|- .|. |.|..+||..+++..|.=.+|+
T Consensus 187 ~g~~v~~~~--~~~~~~~G~~~gI~~~G~--L~v~~~~g~~~~~~~gev~~~~ 235 (236)
T PRK08330 187 LGKRVKIIG--DGEILVEGIAEDIDEFGA--LILRLDDGTVKKVLYGDVSLRF 235 (236)
T ss_pred cCCeEEEEE--CCcEEEEEEEEEECCCCE--EEEEECCCCEEEEEEEEEEEec
Confidence 689999986 3444 379999994 477 9999999998888887665554
No 126
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=33.14 E-value=29 Score=26.64 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=16.2
Q ss_pred CccccccccCC-----CCCCceeccCcCCeec
Q 004423 175 CPVCLKVYRDS-----ESTPMVCCDVCQRWVH 201 (754)
Q Consensus 175 CpVC~K~Y~Ds-----dgg~MLqCDsC~~wFH 201 (754)
|+-|...|.-+ ..+..++|..|.+-|+
T Consensus 5 Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 5 CPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred CCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 56666666322 2455677888877654
No 127
>PF07593 UnbV_ASPIC: ASPIC and UnbV; InterPro: IPR011519 This conserved sequence is found associated with IPR001440 from INTERPRO in several paralogous proteins in Rhodopirellula baltica. It is also found associated with IPR000413 from INTERPRO in several eukaryotic integrin-like proteins (e.g. human ASPIC Q9NQ78 from SWISSPROT) and in several other bacterial proteins (e.g. Q84HN1 from SWISSPROT) [].
Probab=32.96 E-value=67 Score=27.63 Aligned_cols=16 Identities=44% Similarity=0.582 Sum_probs=12.1
Q ss_pred ccccceEEEEecCCCce
Q 004423 692 DAIGKRVEVHQQSDNSW 708 (754)
Q Consensus 692 da~~krvev~~~sd~~w 708 (754)
||||-||+|. +.+..+
T Consensus 1 dAiGA~V~v~-~~~~~q 16 (71)
T PF07593_consen 1 DAIGARVTVT-ADGRTQ 16 (71)
T ss_pred CCCCeEEEEE-ECCeEE
Confidence 7999999999 444443
No 128
>PRK09618 flgD flagellar basal body rod modification protein; Provisional
Probab=32.91 E-value=1.2e+02 Score=30.45 Aligned_cols=76 Identities=29% Similarity=0.334 Sum_probs=46.4
Q ss_pred CCCccccccccccchhhhhhhhhhhhhhhhhhHHHHHHh---------ccccccceEEEEecCCCceeeeeeEEee--cC
Q 004423 651 RPSPFTEKTLFNEDEDAAQSNQDSLMSEIMDANWILKKL---------GKDAIGKRVEVHQQSDNSWHKGVVTDTV--EG 719 (754)
Q Consensus 651 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~~l---------g~da~~krvev~~~sd~~w~~g~v~~~~--~~ 719 (754)
-|..|+| ..+=++|--|=+..+.+..-|=-|..| ..--|||.|.+.. .|+.-.-|+|+.|. .|
T Consensus 44 DPl~P~D-----~tefiaQlAQfs~lEq~~~~n~~l~~l~~~~~~~~~a~slVGk~V~~~~-~~g~~~tG~V~~V~~~~g 117 (142)
T PRK09618 44 DPTNPME-----DKEFIAQMAQFSSLEQMTNMNKSMEKLVSSSDGLTKYSELIGKEVEWEG-EDGEIVSGTVTSVKQKDG 117 (142)
T ss_pred CCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCEEEEEe-CCCCEEEEEEEEEEEcCC
Confidence 3666666 344455555545444444444444444 2456999999874 67777889999995 45
Q ss_pred eeEEEEEecCCcccc
Q 004423 720 TSTLSITLDDSRVKT 734 (754)
Q Consensus 720 ~~~~~v~~d~g~~~~ 734 (754)
. .-+.++||..-.
T Consensus 118 ~--~~~~~v~G~~~~ 130 (142)
T PRK09618 118 D--YPLVLDNGTWIV 130 (142)
T ss_pred c--EEEEEECCEEEe
Confidence 4 445567775433
No 129
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=32.88 E-value=22 Score=39.56 Aligned_cols=11 Identities=27% Similarity=1.059 Sum_probs=8.8
Q ss_pred CCCCccCCCCC
Q 004423 80 HWSSWKCPSCR 90 (754)
Q Consensus 80 ~~~~W~Cp~Ck 90 (754)
..+.+.||.|+
T Consensus 305 ~~gGy~CP~Ck 315 (421)
T COG5151 305 KGGGYECPVCK 315 (421)
T ss_pred ccCceeCCccc
Confidence 35788999996
No 130
>PF13437 HlyD_3: HlyD family secretion protein
Probab=32.69 E-value=1.2e+02 Score=27.01 Aligned_cols=45 Identities=22% Similarity=0.339 Sum_probs=32.8
Q ss_pred cccceEEEEec-CCCceeeeeeEEeec------CeeEEEEEecCCc-ccceec
Q 004423 693 AIGKRVEVHQQ-SDNSWHKGVVTDTVE------GTSTLSITLDDSR-VKTLEL 737 (754)
Q Consensus 693 a~~krvev~~~-sd~~w~~g~v~~~~~------~~~~~~v~~d~g~-~~~~~~ 737 (754)
..|.+|.|+.. ....+..|+|+.|.. ++-.+.+.|++.. ..+|..
T Consensus 52 ~~g~~v~v~~~~~~~~~~~g~V~~I~~~~~~~~~~~~v~~~i~~~~~~~~lrp 104 (105)
T PF13437_consen 52 DPGQKVTVRLDPGPEKTIEGKVSSISPSPDPQGGTYRVEISIDNPKDDSPLRP 104 (105)
T ss_pred eCCCEEEEEECCCCCcEEEEEEEEEeCcccCCCcEEEEEEEECCCCCCCccCC
Confidence 48999999987 434589999999944 5666777788775 444433
No 131
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=32.17 E-value=24 Score=38.01 Aligned_cols=32 Identities=28% Similarity=0.634 Sum_probs=15.5
Q ss_pred ccccccccccc----CCcc-CCCceEEeCcCCCccch
Q 004423 35 VMCRLCFVGEN----EGCE-RARRMLSCKSCGKKYHR 66 (754)
Q Consensus 35 ~~C~vC~~gG~----~gs~-~~eeLL~Cd~C~rsYH~ 66 (754)
..|.+|++.-. .+.+ .....+.|..|+..+|.
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~ 209 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF 209 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE-
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee
Confidence 59999997521 1111 12389999999988874
No 132
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.14 E-value=12 Score=40.94 Aligned_cols=79 Identities=20% Similarity=0.366 Sum_probs=49.6
Q ss_pred CCccCccccccccCCCCCC-ce---eccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCCCCCCchHHHHHHhh
Q 004423 171 KGNYCPVCLKVYRDSESTP-MV---CCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELW 246 (754)
Q Consensus 171 KgnyCpVC~K~Y~Dsdgg~-ML---qCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~~qIk~lkda~~r~W 246 (754)
..+.|.||++....+...+ .| -=-.|.+.||..|..- +-..+ ..-.||.|+.. ++++.+....|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrG----WcivG----KkqtCPYCKek----Vdl~rmfsnpW 290 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRG----WCIVG----KKQTCPYCKEK----VDLKRMFSNPW 290 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhh----heeec----CCCCCchHHHH----hhHhhhccCcc
Confidence 4456889988775443111 11 1236999999999651 11111 24689999854 35667777778
Q ss_pred cccccccHHHHHHHH
Q 004423 247 RRKDMADKDLIASLR 261 (754)
Q Consensus 247 rare~~~~dvI~slR 261 (754)
..-......++.-+|
T Consensus 291 ekph~~yg~LldwlR 305 (328)
T KOG1734|consen 291 EKPHVWYGQLLDWLR 305 (328)
T ss_pred ccchhHHHHHHHHHH
Confidence 877777776666555
No 133
>cd01734 YlxS_C YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.
Probab=32.08 E-value=94 Score=27.60 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=26.9
Q ss_pred ccccceEEEEec--CCC-ceeeeeeEEeecCeeEEEEEec
Q 004423 692 DAIGKRVEVHQQ--SDN-SWHKGVVTDTVEGTSTLSITLD 728 (754)
Q Consensus 692 da~~krvev~~~--sd~-~w~~g~v~~~~~~~~~~~v~~d 728 (754)
..||+.|+|... .++ ....|++.+|-++. +.++++
T Consensus 22 r~~G~~v~v~~~~~~~~~~~~~G~L~~~~~~~--v~l~~~ 59 (83)
T cd01734 22 RAVGKYVHVKLYQPIDGQKEFEGTLLGVDDDT--VTLEVD 59 (83)
T ss_pred HhCCCEEEEEEEcccCCeEEEEEEEEeEeCCE--EEEEEe
Confidence 468999999764 244 57889999999988 666665
No 134
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=32.01 E-value=35 Score=29.56 Aligned_cols=18 Identities=39% Similarity=1.180 Sum_probs=11.6
Q ss_pred CCccCCCCC-----ccccccccC
Q 004423 82 SSWKCPSCR-----ICEICRRTG 99 (754)
Q Consensus 82 ~~W~Cp~Ck-----~C~vC~~sg 99 (754)
-.|.||.|- .|..|++.+
T Consensus 26 v~F~CPnCGe~~I~Rc~~CRk~g 48 (61)
T COG2888 26 VKFPCPNCGEVEIYRCAKCRKLG 48 (61)
T ss_pred eEeeCCCCCceeeehhhhHHHcC
Confidence 568899983 455555544
No 135
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A.
Probab=31.94 E-value=28 Score=31.04 Aligned_cols=39 Identities=31% Similarity=0.691 Sum_probs=21.4
Q ss_pred CCceeccC-cCCeecccCCCCChHHHhhhccCCCCceeCCC
Q 004423 188 TPMVCCDV-CQRWVHCQCDGISDEKYLQFQVDGNLQYRCPT 227 (754)
Q Consensus 188 g~MLqCDs-C~~wFH~eCd~LsdE~ye~~~~d~d~~Y~Cpt 227 (754)
+.||-|.. =.+|+|..|..+.+..+..+.- .+..|+|..
T Consensus 28 PAMI~cs~~~GHWvhaqCm~LsE~~L~~LSq-~n~KYfC~d 67 (78)
T PF13341_consen 28 PAMIFCSRGGGHWVHAQCMDLSETMLIQLSQ-ENTKYFCND 67 (78)
T ss_dssp --EEEE-STT-EEEETGGGT--HHHHHHHHH-SSS-B--TT
T ss_pred ceEEEEeCCCceEeEeecccchHHHHHHHcc-CCceEEEhh
Confidence 45777754 6799999999987766555532 356899965
No 136
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=31.71 E-value=17 Score=27.44 Aligned_cols=41 Identities=34% Similarity=0.893 Sum_probs=28.2
Q ss_pred cccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCC
Q 004423 37 CRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 89 (754)
Q Consensus 37 C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~C 89 (754)
|.+|..... +-+.=..|+..|+..|+..+... .....||.|
T Consensus 1 C~iC~~~~~-------~~~~~~~C~H~fC~~C~~~~~~~-----~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE-------DPVILLPCGHSFCRDCLRKWLEN-----SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS-------SEEEETTTSEEEEHHHHHHHHHH-----TSSSBTTTT
T ss_pred CCcCCcccc-------CCCEEecCCCcchHHHHHHHHHh-----cCCccCCcC
Confidence 667776542 33356799999999999876553 245667776
No 137
>PHA02926 zinc finger-like protein; Provisional
Probab=31.58 E-value=18 Score=38.68 Aligned_cols=58 Identities=21% Similarity=0.450 Sum_probs=33.7
Q ss_pred cccccccccccccCCccCCCc--eEEeCcCCCccchhccCCCccccccCCCCCccCCCCCcc
Q 004423 33 TNVMCRLCFVGENEGCERARR--MLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRIC 92 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~ee--LL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck~C 92 (754)
.+..|.+|.+.--.. ....+ +-.=..|++.|+..|+..|..... .......||.|+..
T Consensus 169 kE~eCgICmE~I~eK-~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~-~~~~~rsCPiCR~~ 228 (242)
T PHA02926 169 KEKECGICYEVVYSK-RLENDRYFGLLDSCNHIFCITCINIWHRTRR-ETGASDNCPICRTR 228 (242)
T ss_pred CCCCCccCccccccc-cccccccccccCCCCchHHHHHHHHHHHhcc-ccCcCCcCCCCcce
Confidence 457999999742110 00001 111248999999999998865432 12235667777543
No 138
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=31.00 E-value=30 Score=24.07 Aligned_cols=9 Identities=44% Similarity=1.767 Sum_probs=6.8
Q ss_pred CCccCCCCC
Q 004423 82 SSWKCPSCR 90 (754)
Q Consensus 82 ~~W~Cp~Ck 90 (754)
+.|.|+.|.
T Consensus 1 g~W~C~~C~ 9 (26)
T smart00547 1 GDWECPACT 9 (26)
T ss_pred CcccCCCCC
Confidence 369998884
No 139
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=30.94 E-value=29 Score=27.71 Aligned_cols=31 Identities=19% Similarity=0.443 Sum_probs=21.6
Q ss_pred ccccccccC--CCCCceeCCCCCCccccccCCC
Q 004423 91 ICEICRRTG--DPNKFMFCRRCDAAYHCYCQHP 121 (754)
Q Consensus 91 ~C~vC~~sg--d~~kLL~Cd~C~raYH~~CL~P 121 (754)
+|.+|++.- ....-+.|..|...+|..|+..
T Consensus 13 ~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 13 YCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp B-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 566666533 3336799999999999999984
No 140
>PRK14633 hypothetical protein; Provisional
Probab=30.90 E-value=92 Score=30.97 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=32.1
Q ss_pred ccccceEEEEecC---CCceeeeeeEEeecCeeEEEEEecCCcccceec
Q 004423 692 DAIGKRVEVHQQS---DNSWHKGVVTDTVEGTSTLSITLDDSRVKTLEL 737 (754)
Q Consensus 692 da~~krvev~~~s---d~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~~~ 737 (754)
-+||++|+|..-. ...+..|++..|-+++ +.+.+++|....+.|
T Consensus 91 r~~G~~v~V~~~~~~~~~~~~~G~L~~v~~~~--i~l~~~~~~~~~i~~ 137 (150)
T PRK14633 91 ALVGFNVKAVTLAPVGSQTKFKGVLERVEGNN--VILNLEDGKEISFDF 137 (150)
T ss_pred HhCCCeEEEEEecccCCcEEEEEEEEEEeCCE--EEEEEcCCcEEEEEh
Confidence 4799999997633 6788999999998888 666665664434433
No 141
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional
Probab=30.65 E-value=82 Score=34.23 Aligned_cols=41 Identities=22% Similarity=0.403 Sum_probs=34.7
Q ss_pred ccceEEEEecCCCceeeeeeEEee-cCeeEEEEEecCCcccceecC
Q 004423 694 IGKRVEVHQQSDNSWHKGVVTDTV-EGTSTLSITLDDSRVKTLELG 738 (754)
Q Consensus 694 ~~krvev~~~sd~~w~~g~v~~~~-~~~~~~~v~~d~g~~~~~~~g 738 (754)
+|++|.|+. ++....|++.+|- .|. |.|..++|..+++--|
T Consensus 236 ~g~~V~v~~--~~~~~~G~~~gId~~G~--L~i~~~~G~~~~~~sG 277 (285)
T PTZ00275 236 KDKKVLIDQ--DNELIVGYLQGLLHDGS--LLLLREKNKLVRVNTG 277 (285)
T ss_pred CCCEEEEEe--CCCEEEEEEEEECCCCe--EEEEeCCCCEEEEEEE
Confidence 699999986 5678999999995 477 9999999988887766
No 142
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=30.42 E-value=45 Score=28.80 Aligned_cols=8 Identities=38% Similarity=1.335 Sum_probs=6.5
Q ss_pred CCccCCCC
Q 004423 82 SSWKCPSC 89 (754)
Q Consensus 82 ~~W~Cp~C 89 (754)
..|.||+|
T Consensus 24 ~~F~CPnC 31 (59)
T PRK14890 24 VKFLCPNC 31 (59)
T ss_pred CEeeCCCC
Confidence 56889988
No 143
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=29.99 E-value=29 Score=39.91 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=33.8
Q ss_pred cccccCC-CCCceeCCCCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 94 ICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 94 vC~~sgd-~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
.|+...+ ...++.|+.|++|-|..|++...... ...|.|..|.
T Consensus 90 ~c~~~~~~~g~~i~c~~c~~Wqh~~C~g~~~~~~-p~~y~c~~c~ 133 (508)
T KOG1844|consen 90 DCGLEDDMEGLMIQCDWCGRWQHKICCGSFKSTK-PDKYVCEICT 133 (508)
T ss_pred ccccccCCCceeeCCcccCcccCceeeeecCCCC-chhceeeeec
Confidence 7887777 77899999999999999999654433 4567777764
No 144
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.76 E-value=97 Score=29.87 Aligned_cols=47 Identities=23% Similarity=0.583 Sum_probs=30.4
Q ss_pred ccCccccccccCC--------CCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCC
Q 004423 173 NYCPVCLKVYRDS--------ESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 229 (754)
Q Consensus 173 nyCpVC~K~Y~Ds--------dgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr 229 (754)
..|+-|...+... ....-.+|..|..-|=.+||-.--+ .--.||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe----------~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHE----------SLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhh----------hccCCcCCC
Confidence 4588888765321 1122467999999999999763322 135688886
No 145
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=29.21 E-value=45 Score=40.43 Aligned_cols=23 Identities=35% Similarity=0.964 Sum_probs=12.8
Q ss_pred ccccccccCCCCCceeCCCCCCcc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAY 114 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raY 114 (754)
+|..|+... +....||..|+...
T Consensus 3 ~Cp~Cg~~n-~~~akFC~~CG~~l 25 (645)
T PRK14559 3 ICPQCQFEN-PNNNRFCQKCGTSL 25 (645)
T ss_pred cCCCCCCcC-CCCCccccccCCCC
Confidence 344455443 33566788886543
No 146
>PRK06955 biotin--protein ligase; Provisional
Probab=29.19 E-value=1e+02 Score=33.54 Aligned_cols=47 Identities=17% Similarity=0.305 Sum_probs=36.1
Q ss_pred cccceEEEEecCCCceeeeeeEEe-ecCeeEEEEEecCCcccceecCceeeE
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDT-VEGTSTLSITLDDSRVKTLELGKQGVR 743 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~-~~~~~~~~v~~d~g~~~~~~~gk~~vr 743 (754)
-+|++|.|... ++.-..|++.+| -.|. |.|..++| .+++.-|-=.+|
T Consensus 247 ~~g~~V~v~~~-~~~~~~G~~~gId~~G~--L~v~~~~g-~~~~~sGeV~~~ 294 (300)
T PRK06955 247 YAGREVVLLED-GAELARGVAHGIDETGQ--LLLDTPAG-RQAIAAGDVSLR 294 (300)
T ss_pred cCCCeEEEEEC-CCcEEEEEEeeECCCce--EEEEeCCC-eEEEEEEEEEEe
Confidence 46999999864 567789999999 4577 99999999 567777654443
No 147
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=28.95 E-value=18 Score=41.78 Aligned_cols=45 Identities=24% Similarity=0.572 Sum_probs=29.5
Q ss_pred ccccccccCCC-CCceeCCCCCCccccccCCCCCccCCCCCcccCCCcccCC
Q 004423 91 ICEICRRTGDP-NKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHS 141 (754)
Q Consensus 91 ~C~vC~~sgd~-~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~C~~ 141 (754)
+|.+|-..=++ ..++.--.|...||..|+..- ..-.||-|+.|..
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w------~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKW------WDSSCPVCRYCQS 222 (493)
T ss_pred CcchhHhhcCccccceeeeecccccchHHHhhc------ccCcChhhhhhcC
Confidence 66777654333 357778889999999999842 2335666655443
No 148
>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]
Probab=28.94 E-value=86 Score=34.52 Aligned_cols=21 Identities=29% Similarity=0.822 Sum_probs=16.4
Q ss_pred CCCCccCCCCC--------ccccccccCC
Q 004423 80 HWSSWKCPSCR--------ICEICRRTGD 100 (754)
Q Consensus 80 ~~~~W~Cp~Ck--------~C~vC~~sgd 100 (754)
..+.|.|+.|. .|+.|+.+..
T Consensus 61 ~pgdw~c~~c~~~n~arr~~c~~c~~s~~ 89 (280)
T KOG4198|consen 61 RPGDWNCPLCGFHNSARRLLCFRCGFSKV 89 (280)
T ss_pred CCcccccCccchhhHHHhhhcceecccCC
Confidence 34899999996 8888886543
No 149
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=28.50 E-value=37 Score=37.68 Aligned_cols=61 Identities=18% Similarity=0.505 Sum_probs=30.4
Q ss_pred CccCccccccc-------cCCCCCCceeccCcCCeecc------cCCCCChHHHhhhccC--CCCceeCCCCCCCC
Q 004423 172 GNYCPVCLKVY-------RDSESTPMVCCDVCQRWVHC------QCDGISDEKYLQFQVD--GNLQYRCPTCRGEC 232 (754)
Q Consensus 172 gnyCpVC~K~Y-------~Dsdgg~MLqCDsC~~wFH~------eCd~LsdE~ye~~~~d--~d~~Y~CptCr~~~ 232 (754)
..+||||+..- ...++...+.|..|...+|. .|.......|..+... .--...|..|.+--
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~~l~y~~~~~~~~~~r~e~C~~C~~Yl 262 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQSGKLHYWSLDSEQAAVKAESCGDCGTYL 262 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCCCceeeeeecCCCcceEeeecccccccc
Confidence 35677776552 11234556667777766652 3333222233322111 11357898897543
No 150
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=28.48 E-value=23 Score=43.19 Aligned_cols=16 Identities=31% Similarity=0.939 Sum_probs=8.5
Q ss_pred ccccCccccCCCcccc
Q 004423 154 RWFLGYTCCDACGRLF 169 (754)
Q Consensus 154 RW~~~~slC~~C~~lf 169 (754)
|+++.+..|..|+.-|
T Consensus 118 rY~YPF~~CT~CGPRf 133 (750)
T COG0068 118 RYLYPFINCTNCGPRF 133 (750)
T ss_pred ceeccccccCCCCcce
Confidence 4455555566665433
No 151
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=28.41 E-value=14 Score=29.44 Aligned_cols=41 Identities=24% Similarity=0.544 Sum_probs=19.4
Q ss_pred cccccccCCCCCceeCC--CCCCccccccCCCCCccCCCCCcccCCC
Q 004423 92 CEICRRTGDPNKFMFCR--RCDAAYHCYCQHPPHKNVSSGPYLCPKH 136 (754)
Q Consensus 92 C~vC~~sgd~~kLL~Cd--~C~raYH~~CL~Ppl~~vp~g~W~CP~C 136 (754)
|.+|++-.- .-+.|. .|+..+|..|+.......... .||.|
T Consensus 1 C~~C~~iv~--~G~~C~~~~C~~r~H~~C~~~y~r~~~~~--~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVT--QGQRCSNRDCNVRLHDDCFKKYFRHRSNP--KCPNC 43 (43)
T ss_dssp -TTT-SB-S--SSEE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred CcccchhHe--eeccCCCCccCchHHHHHHHHHHhcCCCC--CCcCC
Confidence 456665432 346788 699999999998654433322 67775
No 152
>cd01726 LSm6 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm6 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=28.40 E-value=2e+02 Score=24.53 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=26.2
Q ss_pred ccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC
Q 004423 692 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD 729 (754)
Q Consensus 692 da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~ 729 (754)
.++||+|.|.+ .++.=..|++..+-.- +-+.|+|
T Consensus 7 ~~~~~~V~V~L-k~g~~~~G~L~~~D~~---mNlvL~~ 40 (67)
T cd01726 7 AIIGRPVVVKL-NSGVDYRGILACLDGY---MNIALEQ 40 (67)
T ss_pred hhCCCeEEEEE-CCCCEEEEEEEEEccc---eeeEEee
Confidence 35999999999 5778899999988632 4566655
No 153
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=28.14 E-value=16 Score=38.59 Aligned_cols=16 Identities=31% Similarity=0.920 Sum_probs=12.7
Q ss_pred CCCceEEeCcCCCccc
Q 004423 50 RARRMLSCKSCGKKYH 65 (754)
Q Consensus 50 ~~eeLL~Cd~C~rsYH 65 (754)
...+.+.|..|++.|-
T Consensus 113 sd~d~ftCrvCgK~F~ 128 (267)
T KOG3576|consen 113 SDQDSFTCRVCGKKFG 128 (267)
T ss_pred CCCCeeeeehhhhhhh
Confidence 3358899999999983
No 154
>PHA02862 5L protein; Provisional
Probab=28.12 E-value=23 Score=35.53 Aligned_cols=37 Identities=22% Similarity=0.501 Sum_probs=25.9
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
.+.|.+|.+.+++. ..-=.|.+-.+.-|..||..|..
T Consensus 2 ~diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn 38 (156)
T PHA02862 2 SDICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWIN 38 (156)
T ss_pred CCEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHh
Confidence 46999999976321 12334457789999999988764
No 155
>PRK05580 primosome assembly protein PriA; Validated
Probab=27.99 E-value=62 Score=39.26 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=14.5
Q ss_pred HHHHhcCCCCccccccCCCCCCcc
Q 004423 259 SLRAAAGLPTEDEIFSISPYSDDE 282 (754)
Q Consensus 259 slRaa~GLp~~Eei~~~~p~sdD~ 282 (754)
..|...++|+.--+..+.-...++
T Consensus 571 ~~R~~~~~PPf~~l~~i~~~~~~~ 594 (679)
T PRK05580 571 EERRAAGYPPFGRLALLRASAKDE 594 (679)
T ss_pred HHHHhcCCCCHHHhhEeEEecCCH
Confidence 466777888777665554444433
No 156
>PRK14639 hypothetical protein; Provisional
Probab=27.89 E-value=1.2e+02 Score=29.78 Aligned_cols=43 Identities=12% Similarity=0.347 Sum_probs=32.4
Q ss_pred ccccceEEEEecCCCceeeeeeEEeecCeeEEEEEe-cCCcccceec
Q 004423 692 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITL-DDSRVKTLEL 737 (754)
Q Consensus 692 da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~-d~g~~~~~~~ 737 (754)
.++|+.|.|... +..+.+|++.+|-+++ +.+++ .++...++.|
T Consensus 85 r~~G~~v~v~l~-~~~~~~G~L~~~~~~~--i~l~~~~~~~~~~i~~ 128 (140)
T PRK14639 85 KSIGELVKITTN-EKEKFEGKIVSVDDEN--ITLENLENKEKTTINF 128 (140)
T ss_pred HhCCCEEEEEEC-CCcEEEEEEEEEeCCE--EEEEEccCCcEEEEEh
Confidence 579999999884 6889999999998887 66644 4555445544
No 157
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=27.56 E-value=15 Score=45.83 Aligned_cols=51 Identities=31% Similarity=0.726 Sum_probs=35.3
Q ss_pred ccCcccccccc-CCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 173 NYCPVCLKVYR-DSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 173 nyCpVC~K~Y~-Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
.-|++|.-... -+...|--.|.+|.+-||..|+ |..+.. .+.-.||.||.+
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CL------yKWf~S--s~~s~CPlCRse 1521 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCL------YKWFAS--SARSNCPLCRSE 1521 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhhhHHHH------HHHHHh--cCCCCCCccccc
Confidence 34899976654 2234455679999999999993 333322 357889999964
No 158
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=27.27 E-value=58 Score=33.99 Aligned_cols=13 Identities=23% Similarity=0.370 Sum_probs=9.5
Q ss_pred ccccccccccccc
Q 004423 33 TNVMCRLCFVGEN 45 (754)
Q Consensus 33 ~d~~C~vC~~gG~ 45 (754)
...+|..|+..|.
T Consensus 59 ~~~~C~nCg~~GH 71 (190)
T COG5082 59 ENPVCFNCGQNGH 71 (190)
T ss_pred cccccchhcccCc
Confidence 4468888888763
No 159
>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]
Probab=27.10 E-value=21 Score=42.50 Aligned_cols=8 Identities=25% Similarity=0.434 Sum_probs=4.2
Q ss_pred eecccCCC
Q 004423 199 WVHCQCDG 206 (754)
Q Consensus 199 wFH~eCd~ 206 (754)
.+|+.|-.
T Consensus 241 iWHP~C~q 248 (670)
T KOG1044|consen 241 IWHPDCKQ 248 (670)
T ss_pred ccCCcccc
Confidence 34666644
No 160
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=26.87 E-value=32 Score=37.50 Aligned_cols=25 Identities=16% Similarity=0.509 Sum_probs=14.4
Q ss_pred CccccccccCCCCCCceeccCcCCee
Q 004423 175 CPVCLKVYRDSESTPMVCCDVCQRWV 200 (754)
Q Consensus 175 CpVC~K~Y~Dsdgg~MLqCDsC~~wF 200 (754)
|.-|.|.. ...++.|+.|..|..|.
T Consensus 128 C~EC~R~v-w~hGGrif~CsfC~~fl 152 (314)
T PF06524_consen 128 CIECERGV-WDHGGRIFKCSFCDNFL 152 (314)
T ss_pred eeeeeccc-ccCCCeEEEeecCCCee
Confidence 44444432 22366777788877764
No 161
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=26.79 E-value=37 Score=26.13 Aligned_cols=27 Identities=26% Similarity=0.602 Sum_probs=17.1
Q ss_pred CccccccccCC-----CCCCceeccCcCCeec
Q 004423 175 CPVCLKVYRDS-----ESTPMVCCDVCQRWVH 201 (754)
Q Consensus 175 CpVC~K~Y~Ds-----dgg~MLqCDsC~~wFH 201 (754)
||.|...|.-. ..+.++.|..|..-|+
T Consensus 5 CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 5 CPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred CCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 66666666322 3456788888877665
No 162
>KOG1703 consensus Adaptor protein Enigma and related PDZ-LIM proteins [Signal transduction mechanisms; Cytoskeleton]
Probab=26.71 E-value=25 Score=40.79 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=6.7
Q ss_pred CCCCCccccccc
Q 004423 86 CPSCRICEICRR 97 (754)
Q Consensus 86 Cp~Ck~C~vC~~ 97 (754)
++.+..|.+|..
T Consensus 327 h~~~~~c~~~~~ 338 (479)
T KOG1703|consen 327 HPEHFSCEVCAI 338 (479)
T ss_pred cccceeeccccc
Confidence 555556666653
No 163
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=26.64 E-value=1.1e+02 Score=33.00 Aligned_cols=46 Identities=11% Similarity=0.218 Sum_probs=34.1
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecC
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELG 738 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-g~~~~~~~g 738 (754)
.||-+...-+.-|+.|+.++|..|-....+..|.|+. |-.+.+.|.
T Consensus 70 kvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~ 116 (264)
T PF06003_consen 70 KVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLS 116 (264)
T ss_dssp -TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehh
Confidence 6899999999889999999999998644448888865 555555554
No 164
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=26.55 E-value=41 Score=41.29 Aligned_cols=49 Identities=24% Similarity=0.604 Sum_probs=32.4
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCCcc
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRIC 92 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck~C 92 (754)
..-|.+|+..-++ .-+.|..|...| +.|+.... ++....-|.|+.|+-|
T Consensus 1117 ~vdc~~cg~~i~~------~~~~c~ec~~kf-P~CiasG~---pIt~~~fWlC~~CkH~ 1165 (1189)
T KOG2041|consen 1117 KVDCSVCGAKIDP------YDLQCSECQTKF-PVCIASGR---PITDNIFWLCPRCKHR 1165 (1189)
T ss_pred ceeeeecCCcCCc------cCCCChhhcCcC-ceeeccCC---ccccceEEEccccccc
Confidence 3579999875532 557788998887 67886532 1112246999998744
No 165
>PRK04023 DNA polymerase II large subunit; Validated
Probab=26.23 E-value=54 Score=41.61 Aligned_cols=7 Identities=43% Similarity=1.118 Sum_probs=3.4
Q ss_pred ceeCCCC
Q 004423 104 FMFCRRC 110 (754)
Q Consensus 104 LL~Cd~C 110 (754)
..+|..|
T Consensus 651 i~fCP~C 657 (1121)
T PRK04023 651 VYRCPRC 657 (1121)
T ss_pred ceeCccc
Confidence 3455555
No 166
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=26.22 E-value=29 Score=35.22 Aligned_cols=39 Identities=23% Similarity=0.479 Sum_probs=25.4
Q ss_pred CCccccccccccccccCCccCCCceEEeC--cCCCccchhccCCCcc
Q 004423 30 QSNTNVMCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 30 ~s~~d~~C~vC~~gG~~gs~~~eeLL~Cd--~C~rsYH~~CL~p~~e 74 (754)
.+..+..|.+|.+.++. ..-.|. +=-+.-|..||..|..
T Consensus 4 ~s~~~~~CRIC~~~~~~------~~~PC~CkGs~k~VH~sCL~rWi~ 44 (162)
T PHA02825 4 VSLMDKCCWICKDEYDV------VTNYCNCKNENKIVHKECLEEWIN 44 (162)
T ss_pred cCCCCCeeEecCCCCCC------ccCCcccCCCchHHHHHHHHHHHh
Confidence 44556799999876521 222343 3346779999998764
No 167
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=26.12 E-value=43 Score=39.72 Aligned_cols=47 Identities=26% Similarity=0.495 Sum_probs=34.3
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCcc-CCCCCcccCCCcccC
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKN-VSSGPYLCPKHTKCH 140 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~-vp~g~W~CP~C~~C~ 140 (754)
+|+-|.-++ ..+.|..|.+.||..|+.|.... -....|.||.|..|.
T Consensus 62 ~cfechlpg---~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s~k 109 (588)
T KOG3612|consen 62 FCFECHLPG---AVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYSFK 109 (588)
T ss_pred ccccccCCc---ceeeeehhhccccccccCcchhhccccccccCCcccccC
Confidence 444456666 78999999999999999874322 234679999876544
No 168
>PRK14644 hypothetical protein; Provisional
Probab=25.99 E-value=1e+02 Score=30.31 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=33.7
Q ss_pred cccceEEEEecCC---CceeeeeeEEeecCeeEEEEEecCCcccceecCceee
Q 004423 693 AIGKRVEVHQQSD---NSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGV 742 (754)
Q Consensus 693 a~~krvev~~~sd---~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~~~gk~~v 742 (754)
+||++|+|..-.. -.=.+|++.+|-+++-+|.+.. .|+.+++++.++.|
T Consensus 83 ~~G~~v~V~l~~~~~~~~~~~G~L~~v~~~~i~l~~~~-k~~~~~i~~~~~~i 134 (136)
T PRK14644 83 HIGEIIDVSLNKEVNKTDFITGELLENNPETITLKWNC-KGQFRKVEINKENI 134 (136)
T ss_pred hCCCeEEEEEccCcCCeEEEEEEEEEEeCCEEEEEEec-CCcEEEEEECHHHh
Confidence 5899999986433 1345699999999884444333 47777888876543
No 169
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.84 E-value=23 Score=36.71 Aligned_cols=21 Identities=38% Similarity=1.140 Sum_probs=17.4
Q ss_pred eEEeC--cCCCccchhccCCCcc
Q 004423 54 MLSCK--SCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 54 LL~Cd--~C~rsYH~~CL~p~~e 74 (754)
-..|+ +|++.||.-||..|..
T Consensus 182 DqtCdN~qCgkpFHqiCL~dWLR 204 (234)
T KOG3268|consen 182 DQTCDNIQCGKPFHQICLTDWLR 204 (234)
T ss_pred cccccccccCCcHHHHHHHHHHH
Confidence 35687 9999999999988753
No 170
>PRK14873 primosome assembly protein PriA; Provisional
Probab=25.64 E-value=49 Score=40.23 Aligned_cols=41 Identities=27% Similarity=0.690 Sum_probs=0.0
Q ss_pred cCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC------------ccccccccCCCCCceeCCCCCC
Q 004423 49 ERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR------------ICEICRRTGDPNKFMFCRRCDA 112 (754)
Q Consensus 49 ~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck------------~C~vC~~sgd~~kLL~Cd~C~r 112 (754)
.+...++.|..|+ ....|++|. .|..|+... .-..|..|+.
T Consensus 378 rGyap~l~C~~Cg--------------------~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~---~p~~Cp~Cgs 430 (665)
T PRK14873 378 RGYVPSLACARCR--------------------TPARCRHCTGPLGLPSAGGTPRCRWCGRAA---PDWRCPRCGS 430 (665)
T ss_pred CCCCCeeEhhhCc--------------------CeeECCCCCCceeEecCCCeeECCCCcCCC---cCccCCCCcC
No 171
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=25.48 E-value=33 Score=24.87 Aligned_cols=17 Identities=47% Similarity=1.323 Sum_probs=10.5
Q ss_pred CCccCCCCC--------cccccccc
Q 004423 82 SSWKCPSCR--------ICEICRRT 98 (754)
Q Consensus 82 ~~W~Cp~Ck--------~C~vC~~s 98 (754)
+.|.|+.|. .|..|+..
T Consensus 3 g~W~C~~C~~~N~~~~~~C~~C~~~ 27 (30)
T PF00641_consen 3 GDWKCPSCTFMNPASRSKCVACGAP 27 (30)
T ss_dssp SSEEETTTTEEEESSSSB-TTT--B
T ss_pred cCccCCCCcCCchHHhhhhhCcCCC
Confidence 689999986 66666543
No 172
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=25.25 E-value=64 Score=41.11 Aligned_cols=53 Identities=23% Similarity=0.463 Sum_probs=38.7
Q ss_pred CccccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 31 SNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 31 s~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
.....+|.+|++.- +-+...+-++.|..|+=.-...|..... ..+.=.||+|+
T Consensus 12 ~~~~~~c~iCGd~v-g~~~~Ge~FVAC~eC~fpvCr~cyeye~------~~g~~~cp~c~ 64 (1044)
T PLN02915 12 SADAKTCRVCGDEV-GVKEDGQPFVACHVCGFPVCKPCYEYER------SEGNQCCPQCN 64 (1044)
T ss_pred CCCcchhhcccccc-CcCCCCCEEEEeccCCCccccchhhhhh------hcCCccCCccC
Confidence 33557999999752 2234456899999999999999996532 23667899997
No 173
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.16 E-value=17 Score=39.37 Aligned_cols=58 Identities=28% Similarity=0.533 Sum_probs=39.4
Q ss_pred ccCccccccccCCCCCCcee---ccCcCCeecccCCCC-ChHHHhhhccCCCCceeCCCCCCCCC
Q 004423 173 NYCPVCLKVYRDSESTPMVC---CDVCQRWVHCQCDGI-SDEKYLQFQVDGNLQYRCPTCRGECY 233 (754)
Q Consensus 173 nyCpVC~K~Y~Dsdgg~MLq---CDsC~~wFH~eCd~L-sdE~ye~~~~d~d~~Y~CptCr~~~~ 233 (754)
.+|-+|...-.|+.-..||. |-.=.+|+|..|+.. -+|+- . .++-..-.|+.|+.++.
T Consensus 21 R~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~--~-~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 21 RCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQ--R-GNPLQTVSCPQCQTEYI 82 (293)
T ss_pred eeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHh--c-CCCCceeechhhcchhe
Confidence 46888888766655555775 667779999999762 12321 1 23346899999998853
No 174
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=25.13 E-value=64 Score=41.92 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=11.6
Q ss_pred ccccCCCCcccccccceeecc
Q 004423 385 VCSISQPGILKHKYVDEVMVS 405 (754)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~ 405 (754)
|.+++..|.+..+-|..|+..
T Consensus 970 VlS~DenGklv~~kVt~V~Kh 990 (1337)
T PRK14714 970 VYSVDENGKVVLTDITSVSKH 990 (1337)
T ss_pred EeeecCCCcEEEeeeeeEEec
Confidence 445555555555555555555
No 175
>PRK06009 flgD flagellar basal body rod modification protein; Reviewed
Probab=25.07 E-value=1.7e+02 Score=29.26 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=27.8
Q ss_pred cccccceEEEEecCCCceeeeeeEEee--cCeeEEEEEecCCccccee
Q 004423 691 KDAIGKRVEVHQQSDNSWHKGVVTDTV--EGTSTLSITLDDSRVKTLE 736 (754)
Q Consensus 691 ~da~~krvev~~~sd~~w~~g~v~~~~--~~~~~~~v~~d~g~~~~~~ 736 (754)
.--|||.|++. |+. ..|+|..|. .|. ....++||..-.|.
T Consensus 93 ~slIGk~V~~~---~~~-~~G~V~sV~~~~~~--~~~~~~dg~~v~l~ 134 (140)
T PRK06009 93 EGLIGRTVTSA---DGS-ITGVVKSVTVYSDG--VIATLEDGKKVLLG 134 (140)
T ss_pred HHhcCCEEEec---CCc-EEEEEEEEEEeCCc--eEEEEECCEEEEeC
Confidence 34699999873 443 688998885 344 67788888765554
No 176
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.88 E-value=18 Score=42.57 Aligned_cols=49 Identities=27% Similarity=0.865 Sum_probs=32.7
Q ss_pred CccccccccccccccCCccCCCceEEeC-cCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 31 SNTNVMCRLCFVGENEGCERARRMLSCK-SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 31 s~~d~~C~vC~~gG~~gs~~~eeLL~Cd-~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
...+..|.+|.+....+. .+-... .|++.||..|+..|.+. .=.||-|+
T Consensus 288 ~~~~~~C~IC~e~l~~~~----~~~~~rL~C~Hifh~~CL~~W~er-------~qtCP~CR 337 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGH----NITPKRLPCGHIFHDSCLRSWFER-------QQTCPTCR 337 (543)
T ss_pred hhcCCeeeeechhhcccc----ccccceeecccchHHHHHHHHHHH-------hCcCCcch
Confidence 334579999998543211 122232 89999999999998764 23577775
No 177
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=24.85 E-value=43 Score=43.35 Aligned_cols=54 Identities=28% Similarity=0.531 Sum_probs=32.7
Q ss_pred cccCCCcccccCCccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCCCC
Q 004423 160 TCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQ 234 (754)
Q Consensus 160 slC~~C~~lf~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~~q 234 (754)
..|+.|+... ...+|+.|+... .+...|..|..-+..+ .....+||.|-..-..
T Consensus 668 rkCPkCG~~t-~~~fCP~CGs~t-----e~vy~CPsCGaev~~d---------------es~a~~CP~CGtplv~ 721 (1337)
T PRK14714 668 RRCPSCGTET-YENRCPDCGTHT-----EPVYVCPDCGAEVPPD---------------ESGRVECPRCDVELTP 721 (1337)
T ss_pred EECCCCCCcc-ccccCcccCCcC-----CCceeCccCCCccCCC---------------ccccccCCCCCCcccc
Confidence 5688888643 335899997542 2234688787632211 1125689999876443
No 178
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=24.46 E-value=1.9e+02 Score=23.84 Aligned_cols=37 Identities=16% Similarity=0.368 Sum_probs=29.7
Q ss_pred cccceEEEEecCCCceeeeeeEEee--cCeeEEEEEecCC
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTV--EGTSTLSITLDDS 730 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~--~~~~~~~v~~d~g 730 (754)
.||-+|-+.. .++.|+.++|.++- .|.-.+.|-+.+=
T Consensus 2 ~vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g~ 40 (55)
T PF11717_consen 2 EVGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQGW 40 (55)
T ss_dssp -TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETTS
T ss_pred CcCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCCC
Confidence 4899999999 99999999999994 4446778887643
No 179
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=24.30 E-value=52 Score=41.18 Aligned_cols=47 Identities=34% Similarity=0.888 Sum_probs=37.0
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 89 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~C 89 (754)
...|..|..+... .++.|+.|...||..|+.++... ++.+.|.|+.|
T Consensus 155 ~~~~~~~~k~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 201 (904)
T KOG1246|consen 155 YPQCNTCSKGKEE------KLLLCDSCDDSYHTYCLRPPLTR---VPDGDWRCPKC 201 (904)
T ss_pred chhhhccccCCCc------cceecccccCcccccccCCCCCc---CCcCcccCCcc
Confidence 3588888886531 34499999999999999997653 45689999998
No 180
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=24.09 E-value=1.2e+02 Score=26.85 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=19.9
Q ss_pred eeeeeEEeecCeeEEEEEecCCcccc
Q 004423 709 HKGVVTDTVEGTSTLSITLDDSRVKT 734 (754)
Q Consensus 709 ~~g~v~~~~~~~~~~~v~~d~g~~~~ 734 (754)
-.|+|+.+..++ .|-|+|+||..-.
T Consensus 7 ~~G~V~e~L~~~-~f~V~l~ng~~vl 31 (68)
T TIGR00008 7 MEGKVTESLPNA-MFRVELENGHEVL 31 (68)
T ss_pred EEEEEEEECCCC-EEEEEECCCCEEE
Confidence 368999997765 7999999986544
No 181
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.07 E-value=42 Score=33.44 Aligned_cols=42 Identities=29% Similarity=0.721 Sum_probs=31.0
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
.-.|.+|...-.. . ....|+..|-..|+..... ..+.||.|+
T Consensus 13 ~~~C~iC~~~~~~------p--~~l~C~H~~c~~C~~~~~~-------~~~~Cp~cr 54 (386)
T KOG2177|consen 13 ELTCPICLEYFRE------P--VLLPCGHNFCRACLTRSWE-------GPLSCPVCR 54 (386)
T ss_pred cccChhhHHHhhc------C--ccccccchHhHHHHHHhcC-------CCcCCcccC
Confidence 3589999986531 2 5568999999999987544 347888887
No 182
>PHA02929 N1R/p28-like protein; Provisional
Probab=24.00 E-value=28 Score=37.29 Aligned_cols=52 Identities=21% Similarity=0.501 Sum_probs=31.9
Q ss_pred CccCccccccccCCCCCC--ceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCCC
Q 004423 172 GNYCPVCLKVYRDSESTP--MVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECY 233 (754)
Q Consensus 172 gnyCpVC~K~Y~Dsdgg~--MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~~ 233 (754)
..-|++|...+.+.+... ...=..|.+.||..|... +.. ..-.||.||..-.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~----Wl~------~~~tCPlCR~~~~ 227 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDI----WKK------EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHH----HHh------cCCCCCCCCCEee
Confidence 456999998654432111 112346899999999542 221 1348999997644
No 183
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.67 E-value=37 Score=42.16 Aligned_cols=39 Identities=31% Similarity=0.660 Sum_probs=28.4
Q ss_pred cccccccccccCCccCCCceEE-eCcCCCccchhccCCCccccccCCCCCccCCCCCc
Q 004423 35 VMCRLCFVGENEGCERARRMLS-CKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRI 91 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~-Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck~ 91 (754)
..|..|...- ++-. --.|++.||..|+.- ....||.|..
T Consensus 841 skCs~C~~~L--------dlP~VhF~CgHsyHqhC~e~----------~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTL--------DLPFVHFLCGHSYHQHCLED----------KEDKCPKCLP 880 (933)
T ss_pred eeecccCCcc--------ccceeeeecccHHHHHhhcc----------CcccCCccch
Confidence 4899998753 3333 349999999999982 4567888853
No 184
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=23.30 E-value=53 Score=36.43 Aligned_cols=28 Identities=25% Similarity=0.609 Sum_probs=15.6
Q ss_pred cCccccccc-----cC---CCCCCceeccCcCCeec
Q 004423 174 YCPVCLKVY-----RD---SESTPMVCCDVCQRWVH 201 (754)
Q Consensus 174 yCpVC~K~Y-----~D---sdgg~MLqCDsC~~wFH 201 (754)
+||||+..- .. .++...+.|..|...+|
T Consensus 186 ~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~ 221 (305)
T TIGR01562 186 LCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWH 221 (305)
T ss_pred cCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccc
Confidence 666666542 11 23445666777776655
No 185
>PRK14631 hypothetical protein; Provisional
Probab=23.22 E-value=1.8e+02 Score=29.77 Aligned_cols=54 Identities=9% Similarity=0.202 Sum_probs=36.3
Q ss_pred ccccceEEEEec---CCCceeeeeeEEee--cCeeEEEEEecCCcccceecCc-eeeEeeec
Q 004423 692 DAIGKRVEVHQQ---SDNSWHKGVVTDTV--EGTSTLSITLDDSRVKTLELGK-QGVRFVPQ 747 (754)
Q Consensus 692 da~~krvev~~~---sd~~w~~g~v~~~~--~~~~~~~v~~d~g~~~~~~~gk-~~vr~~~~ 747 (754)
-++|+.|+|... .+..=.+|++..|- +++ +.+.++++....+.|.. .++||+++
T Consensus 114 r~~G~~V~V~l~~~~~~~k~~~G~L~~v~~~~~~--v~l~~~~~~~~~i~~~~I~ka~L~~~ 173 (174)
T PRK14631 114 GYIGQQVALRLIAAVENRRKFQAKLLAVDLENEE--IQVEVEGKHVLDIDSNNIDKANLIYQ 173 (174)
T ss_pred HhCCCeEEEEEecccCCceEEEEEEEEeecCCCE--EEEEEcCCcEEEEEhHHcceEEEeec
Confidence 479999999863 34566779999998 777 77777766544454443 33455543
No 186
>PRK11827 hypothetical protein; Provisional
Probab=22.78 E-value=56 Score=28.24 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=15.6
Q ss_pred CccccccccCCCCCCceeccCcCCeecc
Q 004423 175 CPVCLKVYRDSESTPMVCCDVCQRWVHC 202 (754)
Q Consensus 175 CpVC~K~Y~Dsdgg~MLqCDsC~~wFH~ 202 (754)
||+|............+.|..|...|=.
T Consensus 11 CP~ckg~L~~~~~~~~Lic~~~~laYPI 38 (60)
T PRK11827 11 CPVCNGKLWYNQEKQELICKLDNLAFPL 38 (60)
T ss_pred CCCCCCcCeEcCCCCeEECCccCeeccc
Confidence 6777665543333344557777666543
No 187
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.73 E-value=9.7 Score=34.43 Aligned_cols=52 Identities=27% Similarity=0.583 Sum_probs=35.4
Q ss_pred cCCCCC-----ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCcc
Q 004423 85 KCPSCR-----ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (754)
Q Consensus 85 ~Cp~Ck-----~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~ 138 (754)
.|--|+ .|.-|+.+|++-+++.= .|..+||..|+..-+ ..+...-.||.|+.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~h~fh~hCI~~wl-~~~tsq~~CPmcRq 78 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YCLHAFHAHCILKWL-NTPTSQGQCPMCRQ 78 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HHHHHHHHHHHHHHh-cCccccccCCcchh
Confidence 455555 57777888887666543 899999999987533 23444567888763
No 188
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.66 E-value=30 Score=37.70 Aligned_cols=30 Identities=30% Similarity=0.732 Sum_probs=25.4
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKN 71 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p 71 (754)
+--|.+|...- +-..|..|+.-|...||-.
T Consensus 215 d~kC~lC~e~~--------~~ps~t~CgHlFC~~Cl~~ 244 (271)
T COG5574 215 DYKCFLCLEEP--------EVPSCTPCGHLFCLSCLLI 244 (271)
T ss_pred ccceeeeeccc--------CCcccccccchhhHHHHHH
Confidence 45699999865 6778999999999999976
No 189
>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription]
Probab=22.57 E-value=76 Score=37.67 Aligned_cols=44 Identities=14% Similarity=0.372 Sum_probs=27.7
Q ss_pred CCCceeccCcCCeecccCCCCChHHHh-hhccCCCCceeCCCCCCC
Q 004423 187 STPMVCCDVCQRWVHCQCDGISDEKYL-QFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 187 gg~MLqCDsC~~wFH~eCd~LsdE~ye-~~~~d~d~~Y~CptCr~~ 231 (754)
....+||.+|..|||..|...+.. .. .+.-.-.+.|.|..|...
T Consensus 32 ~~~elqcs~clk~~~~~~~~~~~~-~~s~~pf~t~y~fvc~~c~~~ 76 (544)
T KOG2626|consen 32 GIVELQCSTCLKWFHLPTLEAFHL-IKSSLPFMTSYEFVCKECTPS 76 (544)
T ss_pred CceeeEeeeccccccccccccccc-ccccCCcccceeEEeccccCc
Confidence 456789999999999765442211 11 000112478999999865
No 190
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=22.42 E-value=60 Score=23.99 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=14.3
Q ss_pred ccCccccccccCCCCCCceeccCcCCe
Q 004423 173 NYCPVCLKVYRDSESTPMVCCDVCQRW 199 (754)
Q Consensus 173 nyCpVC~K~Y~Dsdgg~MLqCDsC~~w 199 (754)
.||+.|+-......++-...|..|...
T Consensus 4 rfC~~CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 4 RFCGRCGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp SB-TTT--BEEE-SSSS-EEESSSS-E
T ss_pred cccCcCCccccCCCCcCEeECCCCcCE
Confidence 578888776655555666778777653
No 191
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=22.33 E-value=69 Score=23.45 Aligned_cols=28 Identities=21% Similarity=0.558 Sum_probs=21.7
Q ss_pred ccccccccccCCccCCCc-eEEeCcCCCccchhcc
Q 004423 36 MCRLCFVGENEGCERARR-MLSCKSCGKKYHRNCL 69 (754)
Q Consensus 36 ~C~vC~~gG~~gs~~~ee-LL~Cd~C~rsYH~~CL 69 (754)
.|.+|+...++ . +..|..|+-..|..|.
T Consensus 2 ~C~~C~~~~~~------~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDG------FYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCC------CEeEEeCCCCCeEcCccC
Confidence 58899775532 3 8999999988898874
No 192
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=21.94 E-value=83 Score=40.30 Aligned_cols=51 Identities=18% Similarity=0.468 Sum_probs=37.6
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
+..+|.+|++.- +-+...+-++-|..|+=.-.+.|....- ..+.=.||+|+
T Consensus 16 ~~qiCqICGD~v-g~~~~Ge~FVAC~eC~FPVCrpCYEYEr------~eG~q~CPqCk 66 (1079)
T PLN02638 16 GGQVCQICGDNV-GKTVDGEPFVACDVCAFPVCRPCYEYER------KDGNQSCPQCK 66 (1079)
T ss_pred CCceeeeccccc-CcCCCCCEEEEeccCCCccccchhhhhh------hcCCccCCccC
Confidence 335999999752 2224456899999999999999996632 23677899997
No 193
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.65 E-value=43 Score=36.87 Aligned_cols=35 Identities=23% Similarity=0.691 Sum_probs=28.0
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccc
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQN 75 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~ 75 (754)
+..-|.+|...- .-..|..||.-|.-.|+..|...
T Consensus 238 a~~kC~LCLe~~--------~~pSaTpCGHiFCWsCI~~w~~e 272 (293)
T KOG0317|consen 238 ATRKCSLCLENR--------SNPSATPCGHIFCWSCILEWCSE 272 (293)
T ss_pred CCCceEEEecCC--------CCCCcCcCcchHHHHHHHHHHcc
Confidence 446899999854 44579999999999999887653
No 194
>PLN02400 cellulose synthase
Probab=21.60 E-value=89 Score=40.08 Aligned_cols=51 Identities=20% Similarity=0.488 Sum_probs=38.0
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
+..+|++|++.- +-+...+-++.|..|+=.-.+.|....- ..+.=.||+|+
T Consensus 35 ~gqiCqICGD~V-G~t~dGe~FVAC~eCaFPVCRpCYEYER------keGnq~CPQCk 85 (1085)
T PLN02400 35 NGQICQICGDDV-GVTETGDVFVACNECAFPVCRPCYEYER------KDGTQCCPQCK 85 (1085)
T ss_pred CCceeeeccccc-CcCCCCCEEEEEccCCCccccchhheec------ccCCccCcccC
Confidence 445999999752 2234456899999999999999997632 33677899997
No 195
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=21.56 E-value=40 Score=29.24 Aligned_cols=54 Identities=22% Similarity=0.508 Sum_probs=33.8
Q ss_pred cccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
..|.+|....+-|+.+.-..-.|..|....--.|-=.+..+.. ....|.|..|.
T Consensus 3 ~~CPlCkt~~n~gsk~~pNyntCT~Ck~~VCnlCGFNP~Phl~--E~~eWLCLnCQ 56 (61)
T PF05715_consen 3 SLCPLCKTTLNVGSKDPPNYNTCTECKSQVCNLCGFNPTPHLT--EVKEWLCLNCQ 56 (61)
T ss_pred ccCCcccchhhcCCCCCCCccHHHHHhhhhhcccCCCCCcccc--ccceeeeecch
Confidence 4788888776666666667777777766655555433321111 23789998885
No 196
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=21.42 E-value=61 Score=28.88 Aligned_cols=31 Identities=23% Similarity=0.554 Sum_probs=22.0
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLK 70 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~ 70 (754)
+..|.+|+..-. ...+.-..|+..||..|+.
T Consensus 78 ~~~C~vC~k~l~------~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLG------NSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCC------CceEEEeCCCeEEeccccc
Confidence 358999998542 1344445788999999975
No 197
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.16 E-value=31 Score=40.12 Aligned_cols=95 Identities=24% Similarity=0.445 Sum_probs=48.3
Q ss_pred CccCCCCCccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCcccCCCCCCCCCCCCccccc----cC
Q 004423 83 SWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWF----LG 158 (754)
Q Consensus 83 ~W~Cp~Ck~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~C~~Cg~~~pgk~~s~RW~----~~ 158 (754)
.-.|.+|+ =++|+-+- .-++|..|.-..|..|..- -.|.||-=- -|.........-.|. ..
T Consensus 56 PTfCsHCk-DFiwGfgK---QGfQCqvC~fvvHkrChef-------VtF~CPGad----kg~dtDdpr~kHkf~~~tYss 120 (683)
T KOG0696|consen 56 PTFCSHCK-DFIWGFGK---QGFQCQVCCFVVHKRCHEF-------VTFSCPGAD----KGPDTDDPRSKHKFKIHTYSS 120 (683)
T ss_pred Cchhhhhh-hheecccc---CceeeeEEeehhhhhhcce-------EEEECCCCC----CCCCCCCcccccceeeeecCC
Confidence 44577773 23444322 3478888888888888651 123443210 000000001111232 23
Q ss_pred ccccCCCcccccCCccCccccccccCCCCCCceeccCcCCeecccCCC
Q 004423 159 YTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 206 (754)
Q Consensus 159 ~slC~~C~~lf~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~ 206 (754)
.+.|+.|+.+. | .- -.+-+.|+.|..-+|..|..
T Consensus 121 PTFCDhCGsLL------------y-Gl-~HQGmKC~~C~mNVH~rCv~ 154 (683)
T KOG0696|consen 121 PTFCDHCGSLL------------Y-GL-IHQGMKCDTCDMNVHHRCVE 154 (683)
T ss_pred CchhhhHHHHH------------H-HH-HhcccccccccchHHHHHhh
Confidence 45677776442 0 00 01126799999999999965
No 198
>PLN02436 cellulose synthase A
Probab=20.90 E-value=88 Score=40.11 Aligned_cols=51 Identities=20% Similarity=0.477 Sum_probs=37.8
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
+..+|++|++.- +-+...+-++-|..|+=.-...|..... ..+.=.||+|+
T Consensus 35 ~~~iCqICGD~V-g~t~dGe~FVACn~C~fpvCr~Cyeyer------~eg~~~Cpqck 85 (1094)
T PLN02436 35 SGQTCQICGDEI-ELTVDGEPFVACNECAFPVCRPCYEYER------REGNQACPQCK 85 (1094)
T ss_pred CCcccccccccc-CcCCCCCEEEeeccCCCccccchhhhhh------hcCCccCcccC
Confidence 445999999752 2234456899999999999999996532 23667899997
No 199
>PF14438 SM-ATX: Ataxin 2 SM domain; PDB: 1M5Q_1.
Probab=20.60 E-value=1.4e+02 Score=25.99 Aligned_cols=40 Identities=20% Similarity=0.393 Sum_probs=25.3
Q ss_pred cccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCc
Q 004423 691 KDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSR 731 (754)
Q Consensus 691 ~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~ 731 (754)
.-.||.+|+|+. .||+=+.|+-+......+.+.|.|..=+
T Consensus 8 ~~lvG~~V~V~~-~~G~~yeGif~s~s~~~~~~~vvLk~a~ 47 (77)
T PF14438_consen 8 TNLVGQTVEVTT-KNGSVYEGIFHSASPESNEFDVVLKMAR 47 (77)
T ss_dssp HTTTTSEEEEEE-TTS-EEEEEEEEE-T---T--EEEEEEE
T ss_pred HhCcCCEEEEEE-CCCCEEEEEEEeCCCcccceeEEEEeee
Confidence 457999999998 6777799998887554334666665433
No 200
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=20.28 E-value=30 Score=38.57 Aligned_cols=47 Identities=23% Similarity=0.514 Sum_probs=30.5
Q ss_pred ccCccccccccCC--------CCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCC
Q 004423 173 NYCPVCLKVYRDS--------ESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 229 (754)
Q Consensus 173 nyCpVC~K~Y~Ds--------dgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr 229 (754)
..|++|+..+.-. ...--.+|+.|..-|-.+|+-...+. --+|+.|+
T Consensus 363 ~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdvfiHe~----------Lh~C~gCe 417 (421)
T COG5151 363 THCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDVFIHET----------LHFCIGCE 417 (421)
T ss_pred ccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHHHHHHH----------HhhCCCCc
Confidence 3489998766211 12234689999999999997643221 35677775
Done!