Query 004423
Match_columns 754
No_of_seqs 281 out of 1789
Neff 4.3
Searched_HMMs 29240
Date Tue Mar 26 00:46:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysm_A Myeloid/lymphoid or mix 99.8 1.9E-21 6.6E-26 176.6 8.0 104 32-143 5-108 (111)
2 2kwj_A Zinc finger protein DPF 99.8 5.8E-21 2E-25 175.1 3.3 103 35-137 2-106 (114)
3 3v43_A Histone acetyltransfera 99.8 2.4E-20 8.3E-25 170.4 6.5 106 32-137 3-110 (112)
4 2ysm_A Myeloid/lymphoid or mix 99.5 3.2E-14 1.1E-18 129.1 6.3 96 91-231 9-104 (111)
5 4gne_A Histone-lysine N-methyl 99.4 6E-13 2.1E-17 121.6 6.5 85 31-133 12-98 (107)
6 3v43_A Histone acetyltransfera 99.3 5.1E-13 1.8E-17 122.0 4.9 88 99-230 21-111 (112)
7 2kwj_A Zinc finger protein DPF 99.3 8.4E-13 2.9E-17 121.0 4.0 87 99-230 18-107 (114)
8 2e6s_A E3 ubiquitin-protein li 99.3 6.1E-12 2.1E-16 108.7 6.6 55 82-137 20-75 (77)
9 3asl_A E3 ubiquitin-protein li 99.2 8.1E-12 2.8E-16 105.9 5.1 55 82-137 12-67 (70)
10 3shb_A E3 ubiquitin-protein li 99.2 1.8E-11 6.3E-16 105.8 4.7 55 82-137 20-75 (77)
11 2e6r_A Jumonji/ARID domain-con 99.0 6.7E-11 2.3E-15 105.1 3.0 58 81-138 8-65 (92)
12 1f62_A Transcription factor WS 99.0 2.4E-10 8.3E-15 90.5 3.3 47 91-137 2-48 (51)
13 3ask_A E3 ubiquitin-protein li 98.9 4.3E-10 1.5E-14 114.6 5.0 55 82-137 168-223 (226)
14 4gne_A Histone-lysine N-methyl 98.9 1.2E-09 4.1E-14 99.9 7.1 67 91-206 17-85 (107)
15 1fp0_A KAP-1 corepressor; PHD 98.9 2.7E-09 9.3E-14 94.5 6.3 57 80-139 16-72 (88)
16 3lqh_A Histone-lysine N-methyl 98.8 9.2E-10 3.2E-14 109.0 3.3 64 171-234 1-66 (183)
17 1mm2_A MI2-beta; PHD, zinc fin 98.8 3.3E-09 1.1E-13 87.5 4.4 45 91-138 11-55 (61)
18 2yql_A PHD finger protein 21A; 98.7 3.1E-09 1.1E-13 86.0 2.6 44 91-137 11-54 (56)
19 2lri_C Autoimmune regulator; Z 98.7 3.6E-09 1.2E-13 88.9 2.8 44 91-137 14-57 (66)
20 2l5u_A Chromodomain-helicase-D 98.7 5.4E-09 1.9E-13 86.2 3.8 45 90-137 12-56 (61)
21 1xwh_A Autoimmune regulator; P 98.7 3.5E-09 1.2E-13 88.4 2.6 45 91-138 10-54 (66)
22 2puy_A PHD finger protein 21A; 98.7 3.7E-09 1.3E-13 86.6 2.5 44 91-137 7-50 (60)
23 4bbq_A Lysine-specific demethy 98.7 6.1E-09 2.1E-13 94.9 3.5 109 88-232 6-115 (117)
24 1fp0_A KAP-1 corepressor; PHD 98.7 2.6E-08 8.8E-13 88.3 6.0 56 30-96 21-76 (88)
25 1wev_A Riken cDNA 1110020M19; 98.6 1.1E-08 3.7E-13 90.2 2.5 48 91-138 18-71 (88)
26 2lri_C Autoimmune regulator; Z 98.6 2.7E-08 9.2E-13 83.6 4.1 47 33-90 11-57 (66)
27 1mm2_A MI2-beta; PHD, zinc fin 98.6 2.4E-08 8.3E-13 82.3 3.7 48 32-90 7-54 (61)
28 2yt5_A Metal-response element- 98.6 1.3E-08 4.3E-13 84.4 1.5 48 91-138 8-60 (66)
29 2k16_A Transcription initiatio 98.5 2.7E-08 9.2E-13 84.5 2.9 48 91-138 20-67 (75)
30 1xwh_A Autoimmune regulator; P 98.5 2.9E-08 1E-12 82.9 2.4 47 32-89 6-52 (66)
31 2vpb_A Hpygo1, pygopus homolog 98.5 1.3E-08 4.5E-13 85.2 0.2 54 174-229 10-64 (65)
32 2l5u_A Chromodomain-helicase-D 98.5 5.5E-08 1.9E-12 80.2 3.8 47 33-90 10-56 (61)
33 3o36_A Transcription intermedi 98.5 5.5E-08 1.9E-12 95.2 4.3 45 91-138 6-50 (184)
34 2ku3_A Bromodomain-containing 98.5 2.1E-08 7.2E-13 85.4 1.1 46 90-137 17-64 (71)
35 2yql_A PHD finger protein 21A; 98.5 3.3E-08 1.1E-12 80.0 2.2 48 31-89 6-53 (56)
36 2puy_A PHD finger protein 21A; 98.5 3.6E-08 1.2E-12 80.7 2.2 47 32-89 3-49 (60)
37 1f62_A Transcription factor WS 98.5 6.4E-08 2.2E-12 76.5 3.6 47 36-90 2-48 (51)
38 1we9_A PHD finger family prote 98.5 3.9E-08 1.3E-12 81.1 2.4 55 171-232 5-59 (64)
39 3u5n_A E3 ubiquitin-protein li 98.5 5.8E-08 2E-12 96.9 3.6 47 90-139 8-54 (207)
40 2l43_A N-teminal domain from h 98.5 2.4E-08 8.1E-13 88.2 0.4 46 91-138 27-74 (88)
41 2yt5_A Metal-response element- 98.4 3.5E-08 1.2E-12 81.7 1.0 57 31-90 3-59 (66)
42 2ro1_A Transcription intermedi 98.4 1.1E-07 3.9E-12 94.0 4.3 45 91-138 4-48 (189)
43 2xb1_A Pygopus homolog 2, B-ce 98.4 5.2E-08 1.8E-12 88.5 1.7 56 174-231 5-61 (105)
44 3o36_A Transcription intermedi 98.4 1.4E-07 4.8E-12 92.3 4.0 47 33-90 3-49 (184)
45 2e6r_A Jumonji/ARID domain-con 98.4 1.2E-07 4.1E-12 84.2 2.9 50 33-90 15-64 (92)
46 3u5n_A E3 ubiquitin-protein li 98.4 1.8E-07 6.2E-12 93.2 4.0 47 33-90 6-52 (207)
47 2l43_A N-teminal domain from h 98.4 1.2E-07 4.2E-12 83.6 2.3 50 32-89 23-72 (88)
48 1wev_A Riken cDNA 1110020M19; 98.3 1.2E-07 4E-12 83.6 2.0 54 34-90 16-70 (88)
49 2ku3_A Bromodomain-containing 98.3 1.7E-07 5.9E-12 79.7 2.6 50 32-89 14-63 (71)
50 2lv9_A Histone-lysine N-methyl 98.3 3.7E-07 1.3E-11 81.8 4.1 43 94-137 32-74 (98)
51 1wep_A PHF8; structural genomi 98.3 4E-07 1.4E-11 78.3 3.4 53 172-232 12-64 (79)
52 2lbm_A Transcriptional regulat 98.2 1E-07 3.4E-12 91.2 -0.6 44 91-137 65-115 (142)
53 2e6s_A E3 ubiquitin-protein li 98.2 6.1E-07 2.1E-11 77.5 4.3 50 33-90 25-75 (77)
54 2kgg_A Histone demethylase jar 98.2 8.8E-07 3E-11 70.7 4.7 47 175-229 5-52 (52)
55 3asl_A E3 ubiquitin-protein li 98.2 7.2E-07 2.5E-11 75.6 3.9 47 36-90 20-67 (70)
56 2ro1_A Transcription intermedi 98.2 5.9E-07 2E-11 88.9 3.2 46 34-90 2-47 (189)
57 2k16_A Transcription initiatio 98.1 1.4E-06 4.9E-11 73.8 4.3 50 33-90 17-66 (75)
58 1wem_A Death associated transc 98.1 3.5E-07 1.2E-11 78.0 -0.5 56 172-232 16-71 (76)
59 3shb_A E3 ubiquitin-protein li 98.1 1.8E-06 6.1E-11 74.7 3.6 47 36-90 28-75 (77)
60 1wen_A Inhibitor of growth fam 98.1 3E-06 1E-10 72.0 4.7 50 171-233 15-67 (71)
61 1weu_A Inhibitor of growth fam 98.1 2.5E-06 8.5E-11 76.0 4.2 50 171-233 35-87 (91)
62 1wen_A Inhibitor of growth fam 98.0 2.7E-06 9.2E-11 72.4 3.9 44 91-138 18-64 (71)
63 2lbm_A Transcriptional regulat 98.0 1.2E-06 4.1E-11 83.8 1.5 53 30-90 59-115 (142)
64 3o70_A PHD finger protein 13; 98.0 1.6E-06 5.4E-11 73.1 1.9 49 172-231 19-67 (68)
65 1weu_A Inhibitor of growth fam 98.0 4.2E-06 1.4E-10 74.6 4.1 43 91-137 38-83 (91)
66 4bbq_A Lysine-specific demethy 98.0 1.8E-06 6.1E-11 78.5 1.7 93 36-137 6-112 (117)
67 3ask_A E3 ubiquitin-protein li 97.9 3.6E-06 1.2E-10 85.9 3.5 49 34-90 174-223 (226)
68 2vnf_A ING 4, P29ING4, inhibit 97.9 2.3E-06 7.9E-11 70.4 1.3 43 91-137 12-57 (60)
69 1wee_A PHD finger family prote 97.9 2.9E-06 9.8E-11 71.8 1.6 50 173-231 17-66 (72)
70 2ri7_A Nucleosome-remodeling f 97.9 1.6E-06 5.4E-11 83.8 -0.3 53 171-231 7-59 (174)
71 3c6w_A P28ING5, inhibitor of g 97.9 3.1E-06 1.1E-10 69.5 1.3 43 91-137 11-56 (59)
72 2g6q_A Inhibitor of growth pro 97.9 1.9E-06 6.4E-11 71.5 -0.1 47 172-231 11-60 (62)
73 3c6w_A P28ING5, inhibitor of g 97.8 1.9E-06 6.4E-11 70.8 -0.3 46 172-230 9-57 (59)
74 2jmi_A Protein YNG1, ING1 homo 97.8 6.1E-06 2.1E-10 73.4 2.6 43 91-137 28-74 (90)
75 3o70_A PHD finger protein 13; 97.8 6.3E-06 2.1E-10 69.5 2.5 45 91-137 21-65 (68)
76 3kqi_A GRC5, PHD finger protei 97.8 2.5E-06 8.7E-11 72.7 -0.1 51 172-230 10-60 (75)
77 2g6q_A Inhibitor of growth pro 97.8 4.7E-06 1.6E-10 69.1 1.3 43 91-137 13-58 (62)
78 1we9_A PHD finger family prote 97.7 8.5E-06 2.9E-10 67.1 1.8 47 91-137 8-56 (64)
79 3o7a_A PHD finger protein 13 v 97.7 8.5E-06 2.9E-10 65.0 1.7 44 177-230 8-51 (52)
80 2lv9_A Histone-lysine N-methyl 97.7 2.4E-05 8.3E-10 70.0 4.8 46 35-90 29-74 (98)
81 1wee_A PHD finger family prote 97.7 1.2E-05 4E-10 68.0 2.5 47 91-138 18-65 (72)
82 2rsd_A E3 SUMO-protein ligase 97.7 5.6E-06 1.9E-10 69.4 0.2 51 174-230 12-64 (68)
83 2jmi_A Protein YNG1, ING1 homo 97.7 9.3E-06 3.2E-10 72.2 1.4 46 171-229 25-74 (90)
84 3ql9_A Transcriptional regulat 97.7 2.9E-06 9.9E-11 80.0 -2.3 44 91-137 59-109 (129)
85 2kgg_A Histone demethylase jar 97.5 1.9E-05 6.4E-10 63.0 1.1 46 92-137 5-52 (52)
86 3ql9_A Transcriptional regulat 97.5 2.1E-05 7.1E-10 74.2 1.2 53 30-90 53-109 (129)
87 1x4i_A Inhibitor of growth pro 97.5 1.9E-05 6.6E-10 66.9 0.8 41 94-137 10-53 (70)
88 1wep_A PHF8; structural genomi 97.5 2.2E-05 7.4E-10 67.5 0.8 47 91-138 14-62 (79)
89 3o7a_A PHD finger protein 13 v 97.4 5.7E-05 2E-09 60.1 2.7 43 94-137 8-50 (52)
90 1wew_A DNA-binding family prot 97.4 3.7E-05 1.3E-09 66.1 1.2 47 91-138 18-71 (78)
91 2vnf_A ING 4, P29ING4, inhibit 97.4 5.2E-05 1.8E-09 62.3 1.7 44 35-90 11-57 (60)
92 3kqi_A GRC5, PHD finger protei 97.3 2.7E-05 9.2E-10 66.4 -0.2 45 94-138 14-60 (75)
93 2rsd_A E3 SUMO-protein ligase 97.3 6.7E-05 2.3E-09 62.9 2.2 44 94-137 14-63 (68)
94 2ri7_A Nucleosome-remodeling f 97.3 2.3E-05 7.8E-10 75.7 -1.2 47 91-138 10-58 (174)
95 2xb1_A Pygopus homolog 2, B-ce 97.3 4.7E-05 1.6E-09 69.1 0.8 48 91-138 5-60 (105)
96 2vpb_A Hpygo1, pygopus homolog 97.3 1.9E-05 6.3E-10 66.2 -1.8 47 91-137 10-64 (65)
97 1x4i_A Inhibitor of growth pro 97.3 2.9E-05 9.9E-10 65.8 -0.7 45 173-230 7-54 (70)
98 3kv5_D JMJC domain-containing 97.3 3.3E-05 1.1E-09 86.5 -0.7 51 172-230 37-87 (488)
99 1wem_A Death associated transc 97.3 5.2E-05 1.8E-09 64.5 0.6 50 34-89 16-67 (76)
100 1wil_A KIAA1045 protein; ring 97.2 0.00015 5.1E-09 63.9 2.8 55 29-89 10-73 (89)
101 3kv4_A PHD finger protein 8; e 97.2 4.3E-05 1.5E-09 84.8 -0.7 50 174-231 7-56 (447)
102 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.0 0.00023 7.9E-09 64.3 2.2 42 189-230 1-43 (140)
103 1wew_A DNA-binding family prot 97.0 0.00033 1.1E-08 60.1 2.9 51 34-90 16-70 (78)
104 3lqh_A Histone-lysine N-methyl 96.8 0.00022 7.5E-09 70.7 0.4 48 91-138 4-62 (183)
105 3pur_A Lysine-specific demethy 96.6 0.00079 2.7E-08 76.0 2.7 42 185-231 53-94 (528)
106 2equ_A PHD finger protein 20-l 96.2 0.0084 2.9E-07 51.5 6.5 56 692-752 10-66 (74)
107 3rsn_A SET1/ASH2 histone methy 96.0 0.003 1E-07 62.5 3.2 46 185-232 15-60 (177)
108 3kv4_A PHD finger protein 8; e 96.0 0.00064 2.2E-08 75.6 -2.1 45 94-138 9-55 (447)
109 1wil_A KIAA1045 protein; ring 95.8 0.0018 6.3E-08 57.1 0.4 46 91-137 17-74 (89)
110 3qii_A PHD finger protein 20; 95.7 0.014 4.7E-07 51.6 5.8 58 688-749 18-75 (85)
111 3kv5_D JMJC domain-containing 95.7 0.0023 7.9E-08 71.8 0.9 50 34-90 37-86 (488)
112 2g3r_A Tumor suppressor P53-bi 95.6 0.011 3.8E-07 55.1 4.9 46 690-736 3-48 (123)
113 3pur_A Lysine-specific demethy 95.5 0.006 2.1E-07 68.9 3.3 37 52-90 56-92 (528)
114 2ldm_A Uncharacterized protein 94.3 0.0029 9.7E-08 55.4 0.0 54 693-750 8-61 (81)
115 1ssf_A Transformation related 95.0 0.019 6.4E-07 55.6 4.6 46 690-736 7-52 (156)
116 3p8d_A Medulloblastoma antigen 95.0 0.036 1.2E-06 46.9 5.7 54 692-749 7-60 (67)
117 4ap4_A E3 ubiquitin ligase RNF 94.9 0.00098 3.4E-08 59.8 -4.5 92 34-137 7-120 (133)
118 3rsn_A SET1/ASH2 histone methy 93.9 0.029 9.8E-07 55.5 3.2 32 91-123 7-39 (177)
119 2ku7_A MLL1 PHD3-CYP33 RRM chi 93.0 0.024 8.2E-07 51.0 0.8 35 103-137 1-42 (140)
120 3h8z_A FragIle X mental retard 93.0 0.14 4.6E-06 48.3 5.9 52 695-749 5-56 (128)
121 4ap4_A E3 ubiquitin ligase RNF 92.8 0.0095 3.2E-07 53.3 -2.1 96 104-231 26-122 (133)
122 2kiz_A E3 ubiquitin-protein li 92.3 0.046 1.6E-06 44.2 1.6 36 34-74 14-49 (69)
123 1x4j_A Ring finger protein 38; 92.1 0.045 1.5E-06 45.2 1.3 37 33-74 22-58 (75)
124 2pv0_B DNA (cytosine-5)-methyl 90.5 0.027 9.3E-07 61.6 -2.0 92 32-138 48-147 (386)
125 3a1b_A DNA (cytosine-5)-methyl 90.0 0.04 1.4E-06 53.6 -1.1 90 33-137 35-132 (159)
126 1iym_A EL5; ring-H2 finger, ub 90.0 0.15 5E-06 39.3 2.3 45 35-90 6-50 (55)
127 2ect_A Ring finger protein 126 89.9 0.17 6E-06 41.7 2.8 36 34-74 15-50 (78)
128 1mhn_A SurviVal motor neuron p 89.5 0.6 2E-05 37.7 5.7 52 693-746 5-57 (59)
129 2d8s_A Cellular modulator of i 89.4 0.12 4.1E-06 44.4 1.5 47 35-90 16-65 (80)
130 1v87_A Deltex protein 2; ring- 89.3 0.15 5.1E-06 45.1 2.1 55 34-90 25-89 (114)
131 2ecl_A Ring-box protein 2; RNF 89.2 0.21 7.3E-06 42.2 3.0 67 151-231 7-73 (81)
132 2l0b_A E3 ubiquitin-protein li 88.9 0.12 4.2E-06 44.5 1.2 37 33-74 39-75 (91)
133 2d9t_A Tudor domain-containing 88.8 0.85 2.9E-05 39.0 6.4 55 693-749 11-66 (78)
134 3a1b_A DNA (cytosine-5)-methyl 88.0 0.12 4.1E-06 50.4 0.6 50 33-90 78-132 (159)
135 2ct0_A Non-SMC element 1 homol 87.8 0.17 5.8E-06 43.2 1.4 34 35-75 16-49 (74)
136 3dpl_R Ring-box protein 1; ubi 87.8 0.17 5.9E-06 45.6 1.5 41 34-74 37-87 (106)
137 3s6w_A Tudor domain-containing 87.1 1 3.5E-05 35.5 5.5 45 694-738 4-49 (54)
138 3pnw_C Tudor domain-containing 87.0 1.1 3.8E-05 38.4 6.0 67 679-747 5-72 (77)
139 2ep4_A Ring finger protein 24; 86.5 0.17 5.8E-06 41.4 0.6 36 34-74 15-50 (74)
140 4a4f_A SurviVal of motor neuro 86.5 1.1 3.7E-05 36.9 5.5 46 693-738 10-56 (64)
141 2ysl_A Tripartite motif-contai 86.4 0.48 1.6E-05 38.3 3.3 46 33-90 19-64 (73)
142 2ecm_A Ring finger and CHY zin 86.0 0.2 6.7E-06 38.4 0.8 46 34-90 5-50 (55)
143 2yur_A Retinoblastoma-binding 85.5 0.36 1.2E-05 39.8 2.2 47 32-90 13-59 (74)
144 2ecl_A Ring-box protein 2; RNF 84.8 0.29 9.8E-06 41.4 1.3 41 34-74 15-62 (81)
145 1g5v_A SurviVal motor neuron p 84.8 1.4 4.7E-05 38.9 5.6 54 692-747 11-65 (88)
146 2pv0_B DNA (cytosine-5)-methyl 84.0 0.21 7.2E-06 54.7 0.1 50 33-90 92-146 (386)
147 1iym_A EL5; ring-H2 finger, ub 82.6 0.29 9.9E-06 37.6 0.4 48 172-231 5-52 (55)
148 3lrq_A E3 ubiquitin-protein li 82.6 0.3 1E-05 42.7 0.5 44 34-90 22-65 (100)
149 2lcd_A AT-rich interactive dom 83.2 0.26 8.8E-06 45.7 0.0 46 689-736 54-99 (118)
150 2ysj_A Tripartite motif-contai 82.1 0.7 2.4E-05 36.6 2.4 45 33-89 19-63 (63)
151 2djb_A Polycomb group ring fin 82.0 0.42 1.4E-05 39.0 1.1 35 33-74 14-48 (72)
152 2egp_A Tripartite motif-contai 81.9 1.1 3.9E-05 36.5 3.8 48 34-89 12-59 (79)
153 2xjy_A Rhombotin-2; oncoprotei 81.8 0.7 2.4E-05 41.7 2.7 66 135-204 28-94 (131)
154 2rgt_A Fusion of LIM/homeobox 81.8 1.1 3.7E-05 42.7 4.0 62 135-204 32-93 (169)
155 2d8t_A Dactylidin, ring finger 81.8 0.71 2.4E-05 37.6 2.4 33 34-74 15-47 (71)
156 2jtn_A LIM domain-binding prot 81.5 1 3.6E-05 43.3 3.9 62 135-204 86-147 (182)
157 1rut_X Flinc4, fusion protein 81.4 0.29 1E-05 47.5 -0.0 65 136-204 32-97 (188)
158 1vyx_A ORF K3, K3RING; zinc-bi 80.7 0.3 1E-05 39.8 -0.2 46 35-90 7-54 (60)
159 1chc_A Equine herpes virus-1 r 80.7 0.34 1.2E-05 38.8 0.1 34 34-74 5-38 (68)
160 2wac_A CG7008-PA; unknown func 80.4 2.8 9.5E-05 40.7 6.5 51 693-747 53-104 (218)
161 2ect_A Ring finger protein 126 80.3 1 3.5E-05 37.0 2.9 48 172-232 15-62 (78)
162 4a0k_B E3 ubiquitin-protein li 80.0 0.4 1.4E-05 44.2 0.3 42 34-75 48-99 (117)
163 2ea6_A Ring finger protein 4; 79.6 0.42 1.4E-05 38.0 0.3 40 34-74 15-54 (69)
164 2ct2_A Tripartite motif protei 78.6 1.1 3.6E-05 37.4 2.5 51 172-231 15-65 (88)
165 2csy_A Zinc finger protein 183 78.1 0.77 2.6E-05 38.2 1.5 33 34-74 15-47 (81)
166 2ct2_A Tripartite motif protei 77.9 0.89 3E-05 37.9 1.8 49 34-90 15-63 (88)
167 1v87_A Deltex protein 2; ring- 77.5 0.92 3.2E-05 40.0 1.9 55 173-232 26-92 (114)
168 2y43_A E3 ubiquitin-protein li 77.2 0.47 1.6E-05 41.0 -0.1 34 34-74 22-55 (99)
169 3ng2_A RNF4, snurf, ring finge 76.9 0.36 1.2E-05 38.8 -0.8 40 34-74 10-49 (71)
170 2ckl_B Ubiquitin ligase protei 76.8 0.71 2.4E-05 43.6 1.0 35 33-74 53-87 (165)
171 2ecw_A Tripartite motif-contai 76.8 1.4 4.8E-05 36.1 2.7 48 34-90 19-66 (85)
172 2ecm_A Ring finger and CHY zin 76.0 1.6 5.6E-05 33.2 2.7 47 173-231 6-52 (55)
173 3k1l_B Fancl; UBC, ring, RWD, 75.5 0.97 3.3E-05 49.2 1.8 56 173-231 309-370 (381)
174 2ep4_A Ring finger protein 24; 74.9 1 3.5E-05 36.7 1.4 50 172-234 15-64 (74)
175 2jrp_A Putative cytoplasmic pr 74.5 1.1 3.9E-05 39.2 1.6 48 154-231 13-60 (81)
176 2ecy_A TNF receptor-associated 74.3 1.1 3.7E-05 35.8 1.4 34 33-74 14-47 (66)
177 2ecj_A Tripartite motif-contai 73.5 1.5 5.1E-05 33.7 2.0 44 34-89 15-58 (58)
178 3h8z_A FragIle X mental retard 72.9 6.2 0.00021 37.1 6.3 53 693-749 62-121 (128)
179 2ecn_A Ring finger protein 141 72.9 0.68 2.3E-05 37.3 -0.2 32 34-74 15-46 (70)
180 2cup_A Skeletal muscle LIM-pro 72.5 3.9 0.00013 35.1 4.6 63 135-204 32-94 (101)
181 1x4j_A Ring finger protein 38; 71.9 1.5 5E-05 35.9 1.6 48 172-232 23-70 (75)
182 2ckl_A Polycomb group ring fin 71.8 1.3 4.4E-05 38.9 1.3 34 34-74 15-48 (108)
183 2kiz_A E3 ubiquitin-protein li 71.7 2 6.8E-05 34.4 2.4 47 173-232 15-61 (69)
184 4ayc_A E3 ubiquitin-protein li 71.2 1 3.5E-05 41.5 0.6 41 35-90 54-94 (138)
185 3dpl_R Ring-box protein 1; ubi 70.5 2 6.9E-05 38.6 2.3 67 153-231 31-98 (106)
186 2l0b_A E3 ubiquitin-protein li 70.4 0.8 2.7E-05 39.3 -0.3 46 173-231 41-86 (91)
187 2xdp_A Lysine-specific demethy 70.2 6.7 0.00023 36.7 5.8 54 679-736 54-107 (123)
188 2d8s_A Cellular modulator of i 69.4 2.5 8.5E-05 36.2 2.6 51 172-232 15-68 (80)
189 2ecv_A Tripartite motif-contai 68.5 1.5 5.2E-05 35.9 1.0 48 34-90 19-66 (85)
190 3ztg_A E3 ubiquitin-protein li 68.5 1.7 5.7E-05 36.8 1.3 46 33-90 12-57 (92)
191 2xeu_A Ring finger protein 4; 68.4 0.52 1.8E-05 36.9 -1.8 39 35-74 4-42 (64)
192 3l11_A E3 ubiquitin-protein li 67.3 2.9 0.0001 36.9 2.7 43 34-90 15-57 (115)
193 2jtn_A LIM domain-binding prot 67.2 3.6 0.00012 39.4 3.6 15 131-145 142-156 (182)
194 2xk0_A Polycomb protein PCL; t 66.9 10 0.00034 32.4 5.6 44 691-737 15-58 (69)
195 2jne_A Hypothetical protein YF 65.9 1.8 6.2E-05 39.2 1.0 28 153-180 42-69 (101)
196 3nw0_A Non-structural maintena 65.0 2.1 7.2E-05 43.7 1.4 44 34-89 180-223 (238)
197 2rgt_A Fusion of LIM/homeobox 64.4 2 6.8E-05 40.8 1.1 28 35-69 7-34 (169)
198 1b8t_A Protein (CRP1); LIM dom 63.9 3.2 0.00011 40.2 2.4 11 54-64 7-17 (192)
199 2hqx_A P100 CO-activator tudor 63.9 9.5 0.00032 38.1 6.0 51 693-747 67-118 (246)
200 2ea6_A Ring finger protein 4; 63.6 2.7 9.2E-05 33.2 1.6 50 172-231 15-65 (69)
201 2ecv_A Tripartite motif-contai 62.7 2.5 8.5E-05 34.6 1.2 50 173-232 20-69 (85)
202 1jm7_A BRCA1, breast cancer ty 62.3 1.7 5.7E-05 37.9 0.1 45 34-90 21-65 (112)
203 3fl2_A E3 ubiquitin-protein li 62.1 2.1 7.3E-05 38.4 0.8 43 34-90 52-94 (124)
204 3pfq_A PKC-B, PKC-beta, protei 61.5 3.6 0.00012 47.1 2.7 83 35-120 49-146 (674)
205 3ng2_A RNF4, snurf, ring finge 61.0 2.4 8.2E-05 33.8 0.8 49 173-231 11-60 (71)
206 3knv_A TNF receptor-associated 60.7 1.6 5.6E-05 40.8 -0.3 34 33-74 30-63 (141)
207 3k1l_B Fancl; UBC, ring, RWD, 60.6 6.3 0.00022 43.0 4.2 38 35-74 309-348 (381)
208 2xqn_T Testin, TESS; metal-bin 59.4 6 0.00021 35.4 3.3 47 135-184 29-75 (126)
209 2ckl_A Polycomb group ring fin 59.2 10 0.00034 33.1 4.6 46 173-233 16-61 (108)
210 2ysl_A Tripartite motif-contai 58.9 5.2 0.00018 32.1 2.5 47 172-231 20-66 (73)
211 3pfq_A PKC-B, PKC-beta, protei 58.0 5.7 0.0002 45.5 3.6 30 91-120 50-81 (674)
212 1weq_A PHD finger protein 7; s 57.1 24 0.00082 31.1 6.5 62 23-90 10-77 (85)
213 2ct0_A Non-SMC element 1 homol 56.4 2.9 9.9E-05 35.6 0.6 43 91-137 17-59 (74)
214 2lq6_A Bromodomain-containing 54.6 5.5 0.00019 34.8 2.1 19 188-206 29-49 (87)
215 3fdr_A Tudor and KH domain-con 54.5 17 0.00059 31.2 5.2 52 693-747 29-81 (94)
216 1t1h_A Gspef-atpub14, armadill 54.0 3.6 0.00012 33.7 0.8 42 34-89 8-49 (78)
217 3lrq_A E3 ubiquitin-protein li 53.6 6.1 0.00021 34.3 2.2 46 173-232 23-68 (100)
218 2m0o_A PHD finger protein 1; t 53.0 13 0.00046 32.3 4.1 41 691-732 26-66 (79)
219 2diq_A Tudor and KH domain-con 52.9 12 0.00041 33.3 4.1 51 693-747 34-86 (110)
220 4a0k_B E3 ubiquitin-protein li 52.9 3.3 0.00011 38.1 0.4 67 153-231 42-109 (117)
221 2xeu_A Ring finger protein 4; 52.7 2.8 9.6E-05 32.6 -0.1 49 173-231 4-53 (64)
222 2ckl_B Ubiquitin ligase protei 51.8 6.4 0.00022 37.0 2.2 45 174-232 56-100 (165)
223 2qqr_A JMJC domain-containing 51.7 21 0.00073 33.1 5.6 54 679-736 53-106 (118)
224 1jm7_B BARD1, BRCA1-associated 50.9 6.5 0.00022 35.0 2.0 33 34-73 22-54 (117)
225 1z6u_A NP95-like ring finger p 50.8 4.2 0.00014 38.3 0.7 43 34-90 78-120 (150)
226 2ecw_A Tripartite motif-contai 50.5 5.4 0.00018 32.6 1.3 51 172-232 19-69 (85)
227 2yur_A Retinoblastoma-binding 50.2 14 0.00049 30.1 3.8 47 173-232 16-62 (74)
228 3dlm_A Histone-lysine N-methyl 50.2 23 0.00078 36.0 6.0 46 690-736 7-54 (213)
229 1jm7_A BRCA1, breast cancer ty 50.0 8.5 0.00029 33.3 2.6 46 174-232 23-68 (112)
230 4hcz_A PHD finger protein 1; p 49.9 30 0.001 28.6 5.5 42 694-736 6-47 (58)
231 3nw0_A Non-structural maintena 49.9 4.8 0.00016 41.0 1.1 43 91-137 182-224 (238)
232 1bor_A Transcription factor PM 48.0 12 0.00042 29.1 2.9 29 35-71 7-35 (56)
233 2co8_A NEDD9 interacting prote 48.0 17 0.0006 30.3 4.1 10 136-145 42-51 (82)
234 2djb_A Polycomb group ring fin 47.7 9.4 0.00032 30.8 2.3 45 173-232 16-60 (72)
235 4b9w_A TDRD1, tudor domain-con 46.3 30 0.001 33.6 6.1 53 693-748 67-120 (201)
236 1e4u_A Transcriptional repress 46.0 9.3 0.00032 32.3 2.1 50 173-233 12-61 (78)
237 2kre_A Ubiquitin conjugation f 45.2 7.6 0.00026 34.3 1.5 38 29-74 24-61 (100)
238 2e5p_A Protein PHF1, PHD finge 44.7 32 0.0011 29.2 5.0 40 693-733 11-50 (68)
239 1g25_A CDK-activating kinase a 44.4 5.7 0.0002 31.4 0.5 35 35-73 4-39 (65)
240 2csy_A Zinc finger protein 183 44.0 9 0.00031 31.6 1.7 44 173-232 16-59 (81)
241 1y96_A Gemin6, SIP2, GEM-assoc 41.4 45 0.0015 29.4 5.8 34 692-726 14-48 (86)
242 1rmd_A RAG1; V(D)J recombinati 40.4 7 0.00024 34.5 0.5 33 34-74 23-55 (116)
243 2egp_A Tripartite motif-contai 40.3 14 0.00048 29.9 2.3 29 109-137 29-60 (79)
244 2y43_A E3 ubiquitin-protein li 40.3 13 0.00043 31.9 2.1 45 173-232 23-67 (99)
245 2enz_A NPKC-theta, protein kin 40.0 26 0.0009 28.4 3.9 36 171-207 22-57 (65)
246 1m3v_A FLIN4, fusion of the LI 40.0 9.1 0.00031 34.4 1.2 49 135-183 31-80 (122)
247 2lq6_A Bromodomain-containing 39.6 15 0.00051 32.0 2.5 33 33-71 16-50 (87)
248 1wgm_A Ubiquitin conjugation f 39.5 17 0.00058 31.9 2.8 38 29-74 17-55 (98)
249 2y1n_A E3 ubiquitin-protein li 39.2 7 0.00024 42.8 0.4 32 35-74 333-364 (389)
250 1faq_A RAF-1; transferase, ser 38.9 16 0.00054 28.1 2.3 32 171-207 13-44 (52)
251 4b9x_A TDRD1, tudor domain-con 38.6 39 0.0013 33.5 5.7 52 693-747 67-119 (226)
252 3ntk_A Maternal protein tudor; 38.4 38 0.0013 32.2 5.3 52 691-747 47-99 (169)
253 1vyx_A ORF K3, K3RING; zinc-bi 38.1 3 0.0001 33.8 -2.0 44 91-137 8-54 (60)
254 2kr4_A Ubiquitin conjugation f 37.1 11 0.00039 31.9 1.3 38 29-74 9-46 (85)
255 2eqj_A Metal-response element- 37.1 48 0.0017 28.0 5.0 40 693-733 15-54 (66)
256 1ib8_A Conserved protein SP14. 37.0 43 0.0015 32.2 5.5 36 692-729 101-139 (164)
257 1r79_A Diacylglycerol kinase, 36.2 17 0.00057 31.8 2.2 34 173-206 39-72 (84)
258 2eli_A Protein kinase C alpha 35.9 32 0.0011 29.5 3.9 37 170-207 26-62 (85)
259 3hct_A TNF receptor-associated 35.9 14 0.00047 32.9 1.6 34 33-74 17-50 (118)
260 2e5q_A PHD finger protein 19; 34.8 42 0.0014 28.1 4.2 40 693-733 9-48 (63)
261 2dxu_A Biotin--[acetyl-COA-car 34.6 32 0.0011 34.6 4.3 45 694-743 188-233 (235)
262 4ic3_A E3 ubiquitin-protein li 34.3 8.3 0.00029 31.7 -0.0 32 33-72 23-55 (74)
263 4ayc_A E3 ubiquitin-protein li 34.2 14 0.00046 33.9 1.4 43 174-232 55-97 (138)
264 1ptq_A Protein kinase C delta 33.8 20 0.00069 27.2 2.1 35 171-206 10-44 (50)
265 3l11_A E3 ubiquitin-protein li 33.5 18 0.00061 31.8 2.0 26 109-137 32-57 (115)
266 2yuu_A NPKC-delta, protein kin 33.3 28 0.00097 29.6 3.2 37 169-206 25-61 (83)
267 2qqr_A JMJC domain-containing 31.0 63 0.0022 30.0 5.3 38 693-732 7-44 (118)
268 2ysj_A Tripartite motif-contai 30.8 6 0.0002 31.0 -1.4 27 109-136 37-63 (63)
269 4b6d_A RAC GTPase-activating p 29.7 24 0.00081 28.9 2.0 34 171-206 18-51 (61)
270 2fnf_X Putative RAS effector N 29.5 34 0.0012 28.6 3.0 32 171-206 34-65 (72)
271 4a53_A EDC3; RNA binding prote 29.1 42 0.0014 31.6 3.7 31 692-723 9-39 (125)
272 2k1p_A Zinc finger RAN-binding 28.7 27 0.00092 25.3 1.9 18 81-98 4-29 (33)
273 2dkt_A Ring finger and CHY zin 28.7 32 0.0011 33.0 2.9 12 33-44 57-68 (143)
274 1iml_A CRIP, cysteine rich int 28.4 26 0.00088 28.5 2.0 26 92-119 3-28 (76)
275 3uej_A NPKC-delta, protein kin 28.0 28 0.00095 28.2 2.1 36 170-206 18-53 (65)
276 2lk0_A RNA-binding protein 5; 27.7 25 0.00087 25.3 1.6 18 82-99 4-29 (32)
277 3bdl_A Staphylococcal nuclease 27.7 70 0.0024 36.1 6.0 51 693-747 413-464 (570)
278 2cuq_A Four and A half LIM dom 27.5 50 0.0017 26.8 3.6 13 134-146 39-51 (80)
279 1y8f_A UNC-13 homolog A, MUNC1 27.4 31 0.001 28.1 2.3 36 170-206 22-57 (66)
280 1x63_A Skeletal muscle LIM-pro 27.2 44 0.0015 27.4 3.2 13 134-146 41-53 (82)
281 2pk7_A Uncharacterized protein 27.2 24 0.00081 29.8 1.6 29 175-203 11-39 (69)
282 2dkt_A Ring finger and CHY zin 26.9 54 0.0019 31.4 4.2 32 162-197 74-105 (143)
283 2hf1_A Tetraacyldisaccharide-1 26.6 21 0.00071 30.0 1.1 29 175-203 11-39 (68)
284 2fiy_A Protein FDHE homolog; F 26.2 28 0.00096 36.9 2.3 10 222-231 253-262 (309)
285 1bor_A Transcription factor PM 26.2 42 0.0014 25.9 2.8 22 109-137 23-44 (56)
286 2jr6_A UPF0434 protein NMA0874 26.1 22 0.00074 29.9 1.1 29 175-203 11-39 (68)
287 2enn_A NPKC-theta, protein kin 26.1 37 0.0013 28.6 2.6 37 169-206 31-67 (77)
288 2dlq_A GLI-kruppel family memb 25.7 63 0.0021 27.2 4.1 43 187-233 63-105 (124)
289 2c2l_A CHIP, carboxy terminus 25.5 26 0.00089 34.6 1.8 35 32-74 206-240 (281)
290 2d8y_A Eplin protein; LIM doma 25.1 39 0.0013 28.5 2.6 27 91-119 17-43 (91)
291 2l4z_A DNA endonuclease RBBP8, 25.1 28 0.00095 31.6 1.8 10 136-145 88-97 (123)
292 2js4_A UPF0434 protein BB2007; 24.8 22 0.00075 30.1 0.9 29 175-203 11-39 (70)
293 3gj8_B Nuclear pore complex pr 24.6 28 0.00096 30.5 1.6 19 81-99 6-32 (92)
294 2vc8_A Enhancer of mRNA-decapp 24.6 99 0.0034 27.3 5.0 47 679-734 2-50 (84)
295 1wgs_A MYST histone acetyltran 23.8 1E+02 0.0034 28.9 5.3 35 693-728 14-52 (133)
296 2eay_A Biotin [acetyl-COA-carb 23.5 46 0.0016 33.3 3.2 44 694-743 187-231 (233)
297 3fl2_A E3 ubiquitin-protein li 23.5 8.8 0.0003 34.3 -1.9 27 109-138 69-95 (124)
298 3htk_C E3 SUMO-protein ligase 23.4 43 0.0015 35.1 3.0 48 31-90 178-227 (267)
299 2cu8_A Cysteine-rich protein 2 23.3 48 0.0016 26.8 2.7 26 91-118 11-36 (76)
300 2jny_A Uncharacterized BCR; st 23.2 26 0.0009 29.4 1.1 29 175-203 13-41 (67)
301 1weo_A Cellulose synthase, cat 23.1 21 0.00073 31.9 0.5 37 34-71 16-52 (93)
302 2egq_A FHL1 protein; LIM domai 22.5 59 0.002 26.2 3.1 13 134-146 44-56 (77)
303 1j2o_A FLIN2, fusion of rhombo 22.4 65 0.0022 28.4 3.6 32 135-166 29-60 (114)
304 2eqk_A Tudor domain-containing 22.3 1.5E+02 0.0053 26.0 5.8 50 694-746 24-74 (85)
305 4g9i_A Hydrogenase maturation 22.3 18 0.00062 42.8 -0.1 13 255-267 234-246 (772)
306 3rkx_A Biotin-[acetyl-COA-carb 21.7 85 0.0029 33.0 4.9 43 693-739 277-320 (323)
307 6rxn_A Rubredoxin; electron tr 21.5 52 0.0018 25.8 2.4 33 105-137 5-37 (46)
308 2l8d_A Lamin-B receptor; DNA b 21.4 1.8E+02 0.006 24.6 5.7 46 692-737 10-55 (66)
309 3vth_A Hydrogenase maturation 21.3 22 0.00074 42.1 0.3 10 175-184 164-173 (761)
310 2dig_A Lamin-B receptor; tudor 20.9 1.7E+02 0.0057 24.9 5.4 54 692-747 13-66 (68)
311 3sd4_A PHD finger protein 20; 20.7 1.4E+02 0.0046 24.6 5.0 36 693-731 14-51 (69)
312 3bfm_A Biotin protein ligase-l 20.5 83 0.0029 31.3 4.4 37 693-738 192-229 (235)
313 2q1f_A Chondroitinase; alpha p 20.2 60 0.002 39.7 3.8 42 698-739 968-1014(1022)
314 1rfh_A RAS association (ralgds 20.1 36 0.0012 27.3 1.3 31 172-206 22-52 (59)
No 1
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-21 Score=176.59 Aligned_cols=104 Identities=28% Similarity=0.812 Sum_probs=92.2
Q ss_pred ccccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCCccccccccCCCCCceeCCCCC
Q 004423 32 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCD 111 (754)
Q Consensus 32 ~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck~C~vC~~sgd~~kLL~Cd~C~ 111 (754)
.++++|.+|..+|+ +++||.|+.|+++||+.||++...+ ++.+.|+|++|.+|.+|+..+++..||+|+.|+
T Consensus 5 ~~~~~C~~C~~~g~-----~~~ll~C~~C~~~~H~~Cl~~~~~~---~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~ 76 (111)
T 2ysm_A 5 SSGANCAVCDSPGD-----LLDQFFCTTCGQHYHGMCLDIAVTP---LKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCD 76 (111)
T ss_dssp CCCSCBTTTCCCCC-----TTTSEECSSSCCEECTTTTTCCCCT---TTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSC
T ss_pred CCCCCCcCCCCCCC-----CcCCeECCCCCCCcChHHhCCcccc---ccccCccCCcCCcccccCccCCCCCeeECCCCC
Confidence 35679999999873 3578999999999999999997643 346899999999999999999888999999999
Q ss_pred CccccccCCCCCccCCCCCcccCCCcccCCCC
Q 004423 112 AAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCG 143 (754)
Q Consensus 112 raYH~~CL~Ppl~~vp~g~W~CP~C~~C~~Cg 143 (754)
++||.+|+.|++..+|.+.|+|+.|..|..++
T Consensus 77 ~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~g~ 108 (111)
T 2ysm_A 77 KGYHTFCLQPVMKSVPTNGWKCKNCRICISGP 108 (111)
T ss_dssp CEEEGGGSSSCCSSCCSSCCCCHHHHCCSCSC
T ss_pred cHHhHHhcCCccccCCCCCcCCcCCcCcCCCC
Confidence 99999999999999999999999988776654
No 2
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.81 E-value=5.8e-21 Score=175.15 Aligned_cols=103 Identities=28% Similarity=0.789 Sum_probs=89.4
Q ss_pred ccccccccccc--CCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCCccccccccCCCCCceeCCCCCC
Q 004423 35 VMCRLCFVGEN--EGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDA 112 (754)
Q Consensus 35 ~~C~vC~~gG~--~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck~C~vC~~sgd~~kLL~Cd~C~r 112 (754)
++|.+|..++. ...+..++||.|+.|+++||+.||++...+...++.+.|+|++|.+|.+|+...++..||.|+.|++
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~ 81 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDR 81 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTTTTEEECSSSCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccCccCcccccCCCCceEEcCCCCc
Confidence 58999988762 2334567999999999999999999876544344568999999999999999887789999999999
Q ss_pred ccccccCCCCCccCCCCCcccCCCc
Q 004423 113 AYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 113 aYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
+||++|+.|++..+|.+.|+|+.|.
T Consensus 82 ~yH~~Cl~ppl~~~P~g~W~C~~C~ 106 (114)
T 2kwj_A 82 GYHMYCLNPPVAEPPEGSWSCHLCW 106 (114)
T ss_dssp EEETTTSSSCCSSCCSSCCCCHHHH
T ss_pred cccccccCCCccCCCCCCeECcccc
Confidence 9999999999999999999999885
No 3
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.80 E-value=2.4e-20 Score=170.41 Aligned_cols=106 Identities=25% Similarity=0.732 Sum_probs=89.7
Q ss_pred cccccccccccccc-CCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCCccccccccC-CCCCceeCCC
Q 004423 32 NTNVMCRLCFVGEN-EGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTG-DPNKFMFCRR 109 (754)
Q Consensus 32 ~~d~~C~vC~~gG~-~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck~C~vC~~sg-d~~kLL~Cd~ 109 (754)
.+.++|.+|.+.+. ..+...++||.|+.|+++||++||++...+...++.+.|+|++|++|.+|+..+ +++.||+|+.
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd~ 82 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDS 82 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTTCCCEECTT
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCCCccceEEcCC
Confidence 35679999998753 233456799999999999999999976544444456899999999999999865 4458999999
Q ss_pred CCCccccccCCCCCccCCCCCcccCCCc
Q 004423 110 CDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 110 C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
|+++||.+|+.|++..+|.+.|+|+.|.
T Consensus 83 C~~~yH~~Cl~p~l~~~P~~~W~C~~C~ 110 (112)
T 3v43_A 83 CDRGFHMECCDPPLTRMPKGMWICQICR 110 (112)
T ss_dssp TCCEECGGGCSSCCSSCCSSCCCCTTTS
T ss_pred CCCeeecccCCCCCCCCCCCCeECCCCC
Confidence 9999999999999999999999999985
No 4
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.47 E-value=3.2e-14 Score=129.10 Aligned_cols=96 Identities=25% Similarity=0.622 Sum_probs=76.7
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCcccCCCCCCCCCCCCccccccCccccCCCccccc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFV 170 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~~lf~ 170 (754)
+|.+|+..++...||.|+.|++.||..|+.+....++.+.|+|+.|..|..|+..
T Consensus 9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~------------------------- 63 (111)
T 2ysm_A 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQS------------------------- 63 (111)
T ss_dssp CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCC-------------------------
T ss_pred CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCCcccccCcc-------------------------
Confidence 7889999987778899999999999999999887778899999999766655532
Q ss_pred CCccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 171 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 171 KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
.+...||.|+.|+++||..|+.+... ..+.+.|+|+.|..-
T Consensus 64 --------------~~~~~ll~Cd~C~~~yH~~Cl~ppl~------~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 64 --------------GEDSKMLVCDTCDKGYHTFCLQPVMK------SVPTNGWKCKNCRIC 104 (111)
T ss_dssp --------------SCCTTEEECSSSCCEEEGGGSSSCCS------SCCSSCCCCHHHHCC
T ss_pred --------------CCCCCeeECCCCCcHHhHHhcCCccc------cCCCCCcCCcCCcCc
Confidence 12346899999999999999874211 123578999999754
No 5
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.36 E-value=6e-13 Score=121.60 Aligned_cols=85 Identities=24% Similarity=0.525 Sum_probs=73.3
Q ss_pred CccccccccccccccCCccCCCceEEeC--cCCCccchhccCCCccccccCCCCCccCCCCCccccccccCCCCCceeCC
Q 004423 31 SNTNVMCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCR 108 (754)
Q Consensus 31 s~~d~~C~vC~~gG~~gs~~~eeLL~Cd--~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck~C~vC~~sgd~~kLL~Cd 108 (754)
...+++|.+|+.+| +||.|+ .|+++||+.||++. .++.+.|+||.| .|.+|++... ++|.
T Consensus 12 ~~~~~~C~~C~~~G--------~ll~CD~~~Cp~~fH~~Cl~L~-----~~P~g~W~Cp~c-~C~~C~k~~~----~~C~ 73 (107)
T 4gne_A 12 QMHEDYCFQCGDGG--------ELVMCDKKDCPKAYHLLCLNLT-----QPPYGKWECPWH-QCDECSSAAV----SFCE 73 (107)
T ss_dssp CSSCSSCTTTCCCS--------EEEECCSTTCCCEECTGGGTCS-----SCCSSCCCCGGG-BCTTTCSBCC----EECS
T ss_pred CCCCCCCCcCCCCC--------cEeEECCCCCCcccccccCcCC-----cCCCCCEECCCC-CCCcCCCCCC----cCcC
Confidence 34557999999765 899999 89999999999853 235689999999 6999998763 8999
Q ss_pred CCCCccccccCCCCCccCCCCCccc
Q 004423 109 RCDAAYHCYCQHPPHKNVSSGPYLC 133 (754)
Q Consensus 109 ~C~raYH~~CL~Ppl~~vp~g~W~C 133 (754)
.|+++||..|+...+...+...|+|
T Consensus 74 ~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 74 FCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp SSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CCCcchhhhccCCcceecCCCCcee
Confidence 9999999999999998888889986
No 6
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.34 E-value=5.1e-13 Score=121.99 Aligned_cols=88 Identities=23% Similarity=0.482 Sum_probs=66.4
Q ss_pred CCCCCceeCCCCCCccccccCCCC--C-ccCCCCCcccCCCcccCCCCCCCCCCCCccccccCccccCCCcccccCCccC
Q 004423 99 GDPNKFMFCRRCDAAYHCYCQHPP--H-KNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYC 175 (754)
Q Consensus 99 gd~~kLL~Cd~C~raYH~~CL~Pp--l-~~vp~g~W~CP~C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~~lf~KgnyC 175 (754)
+..+.||.|+.|++.||.+|++.. + ..++.+.|+|+.|..|..|+...
T Consensus 21 g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~----------------------------- 71 (112)
T 3v43_A 21 KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQG----------------------------- 71 (112)
T ss_dssp SCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCC-----------------------------
T ss_pred CCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcC-----------------------------
Confidence 455689999999999999999853 2 24678899999998666665321
Q ss_pred ccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCC
Q 004423 176 PVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 230 (754)
Q Consensus 176 pVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~ 230 (754)
.+...||.|+.|+++||..|+.+.- ...+.+.|+|+.|+.
T Consensus 72 ---------~~~~~ll~Cd~C~~~yH~~Cl~p~l------~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 72 ---------KNADNMLFCDSCDRGFHMECCDPPL------TRMPKGMWICQICRP 111 (112)
T ss_dssp ---------CTTCCCEECTTTCCEECGGGCSSCC------SSCCSSCCCCTTTSC
T ss_pred ---------CCccceEEcCCCCCeeecccCCCCC------CCCCCCCeECCCCCC
Confidence 1235789999999999999986321 112467899999985
No 7
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.30 E-value=8.4e-13 Score=121.01 Aligned_cols=87 Identities=22% Similarity=0.511 Sum_probs=67.1
Q ss_pred CCCCCceeCCCCCCccccccCCCCCc---cCCCCCcccCCCcccCCCCCCCCCCCCccccccCccccCCCcccccCCccC
Q 004423 99 GDPNKFMFCRRCDAAYHCYCQHPPHK---NVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYC 175 (754)
Q Consensus 99 gd~~kLL~Cd~C~raYH~~CL~Ppl~---~vp~g~W~CP~C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~~lf~KgnyC 175 (754)
++.+.||.|+.|++.||..|+.+... .++.+.|+|+.|..|..|+..
T Consensus 18 g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~------------------------------ 67 (114)
T 2kwj_A 18 GRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTS------------------------------ 67 (114)
T ss_dssp CCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCC------------------------------
T ss_pred CCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccCccCccccc------------------------------
Confidence 44568999999999999999997643 467889999999766666542
Q ss_pred ccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCC
Q 004423 176 PVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 230 (754)
Q Consensus 176 pVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~ 230 (754)
.+++.||.|+.|+++||..|+.+.- ...+.+.|+|+.|..
T Consensus 68 ---------~~~~~ll~Cd~C~~~yH~~Cl~ppl------~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 68 ---------ENDDQLLFCDDCDRGYHMYCLNPPV------AEPPEGSWSCHLCWE 107 (114)
T ss_dssp ---------TTTTTEEECSSSCCEEETTTSSSCC------SSCCSSCCCCHHHHH
T ss_pred ---------CCCCceEEcCCCCccccccccCCCc------cCCCCCCeECccccc
Confidence 1246799999999999999988421 122467899999963
No 8
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=6.1e-12 Score=108.68 Aligned_cols=55 Identities=36% Similarity=0.950 Sum_probs=51.5
Q ss_pred CCccCCCCCccccccccCCCCCceeCCCCCCccccccCCCCCccCCCC-CcccCCCc
Q 004423 82 SSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSG-PYLCPKHT 137 (754)
Q Consensus 82 ~~W~Cp~Ck~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g-~W~CP~C~ 137 (754)
..|.|++| +|.+|+...+.+.||+|+.|+++||++|+.|++..+|.+ .|+|+.|.
T Consensus 20 ~~w~C~~c-~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 20 PEKKCHSC-SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp SSSCCSSS-SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred CCeECCCC-CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCcc
Confidence 45999999 999999987778999999999999999999999999999 99999985
No 9
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.21 E-value=8.1e-12 Score=105.92 Aligned_cols=55 Identities=36% Similarity=0.960 Sum_probs=51.9
Q ss_pred CCccCCCCCccccccccCCCCCceeCCCCCCccccccCCCCCccCCCC-CcccCCCc
Q 004423 82 SSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSG-PYLCPKHT 137 (754)
Q Consensus 82 ~~W~Cp~Ck~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g-~W~CP~C~ 137 (754)
..|.|++| +|.+|++..+.+.||.|+.|+++||++|+.|++..+|.+ .|+|+.|.
T Consensus 12 ~~w~C~~C-~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 67 (70)
T 3asl_A 12 VNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 67 (70)
T ss_dssp TTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTS
T ss_pred CCeECCCC-CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCcc
Confidence 67999999 999999887777999999999999999999999999999 99999986
No 10
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.16 E-value=1.8e-11 Score=105.79 Aligned_cols=55 Identities=36% Similarity=0.959 Sum_probs=52.2
Q ss_pred CCccCCCCCccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCC-cccCCCc
Q 004423 82 SSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGP-YLCPKHT 137 (754)
Q Consensus 82 ~~W~Cp~Ck~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~-W~CP~C~ 137 (754)
..|+|+.| .|.+|+...+++.||+|+.|+++||++|+.|++..+|.+. |+|+.|.
T Consensus 20 ~~W~C~~C-~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~ 75 (77)
T 3shb_A 20 VNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 75 (77)
T ss_dssp TTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC
T ss_pred CCCCCCCC-cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcc
Confidence 57999999 9999999988889999999999999999999999999998 9999986
No 11
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=6.7e-11 Score=105.13 Aligned_cols=58 Identities=34% Similarity=0.828 Sum_probs=53.9
Q ss_pred CCCccCCCCCccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCcc
Q 004423 81 WSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (754)
Q Consensus 81 ~~~W~Cp~Ck~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~ 138 (754)
...|.|.++.+|.+|+..++++.||.|+.|+++||+.|+.|++..+|.+.|+|+.|..
T Consensus 8 ~s~~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 8 HSSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CchhhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 4789999999999999988777899999999999999999999999999999999864
No 12
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.96 E-value=2.4e-10 Score=90.47 Aligned_cols=47 Identities=32% Similarity=0.996 Sum_probs=43.9
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
+|.+|+..++.+.||.|+.|+++||..|+.|++..+|.+.|+|+.|.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~ 48 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTS
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcc
Confidence 58899988888899999999999999999999999999999999986
No 13
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.94 E-value=4.3e-10 Score=114.56 Aligned_cols=55 Identities=36% Similarity=0.960 Sum_probs=48.1
Q ss_pred CCccCCCCCccccccccCCCCCceeCCCCCCccccccCCCCCccCCCC-CcccCCCc
Q 004423 82 SSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSG-PYLCPKHT 137 (754)
Q Consensus 82 ~~W~Cp~Ck~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g-~W~CP~C~ 137 (754)
..|.|..| .|.+|+...+.+.||+|+.|+++||+.|+.|++..+|.+ .|+||.|.
T Consensus 168 ~~w~C~~c-~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~ 223 (226)
T 3ask_A 168 VNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 223 (226)
T ss_dssp TTSCCTTT-SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC
T ss_pred cCEecCCC-CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCc
Confidence 57999999 999999988778999999999999999999999999999 99999985
No 14
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.93 E-value=1.2e-09 Score=99.89 Aligned_cols=67 Identities=27% Similarity=0.719 Sum_probs=56.2
Q ss_pred ccccccccCCCCCceeCC--CCCCccccccCCCCCccCCCCCcccCCCcccCCCCCCCCCCCCccccccCccccCCCccc
Q 004423 91 ICEICRRTGDPNKFMFCR--RCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRL 168 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd--~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~~l 168 (754)
+|.+|+..| .||.|+ .|+++||..|+. +..+|.+.|+||.|. |..|+...
T Consensus 17 ~C~~C~~~G---~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~-C~~C~k~~---------------------- 68 (107)
T 4gne_A 17 YCFQCGDGG---ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ-CDECSSAA---------------------- 68 (107)
T ss_dssp SCTTTCCCS---EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB-CTTTCSBC----------------------
T ss_pred CCCcCCCCC---cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC-CCcCCCCC----------------------
Confidence 677788665 799999 899999999998 778999999999996 66666431
Q ss_pred ccCCccCccccccccCCCCCCceeccCcCCeecccCCC
Q 004423 169 FVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 206 (754)
Q Consensus 169 f~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~ 206 (754)
.+.|..|+.+||.+|..
T Consensus 69 ---------------------~~~C~~Cp~sfC~~c~~ 85 (107)
T 4gne_A 69 ---------------------VSFCEFCPHSFCKDHEK 85 (107)
T ss_dssp ---------------------CEECSSSSCEECTTTCT
T ss_pred ---------------------CcCcCCCCcchhhhccC
Confidence 16799999999999976
No 15
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.85 E-value=2.7e-09 Score=94.52 Aligned_cols=57 Identities=21% Similarity=0.566 Sum_probs=50.7
Q ss_pred CCCCccCCCCCccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCccc
Q 004423 80 HWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKC 139 (754)
Q Consensus 80 ~~~~W~Cp~Ck~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~C 139 (754)
....|....-.+|.+|+..+ .||+|+.|+++||++|+.|++..+|.+.|+|+.|..+
T Consensus 16 ~~~~~~d~n~~~C~vC~~~g---~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 16 DEFGTLDDSATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp CCCCSSSSSSSCCSSSCSSS---CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred ccccccCCCCCcCcCcCCCC---CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 44677777778999999887 7999999999999999999999999999999998753
No 16
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=98.84 E-value=9.2e-10 Score=108.99 Aligned_cols=64 Identities=36% Similarity=0.906 Sum_probs=52.2
Q ss_pred CCccCccccccccCCC-CCCceeccCcCCeecccCCCCChHHHhhhcc-CCCCceeCCCCCCCCCC
Q 004423 171 KGNYCPVCLKVYRDSE-STPMVCCDVCQRWVHCQCDGISDEKYLQFQV-DGNLQYRCPTCRGECYQ 234 (754)
Q Consensus 171 KgnyCpVC~K~Y~Dsd-gg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~-d~d~~Y~CptCr~~~~q 234 (754)
+|+|||+|.+.|.+++ +..||+|+.|..|||..|+++.++.++.+.. +....|+|+.|+.....
T Consensus 1 ~G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 1 SGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp -CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 4789999999998876 6789999999999999999999887776631 22247999999987553
No 17
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.79 E-value=3.3e-09 Score=87.48 Aligned_cols=45 Identities=33% Similarity=1.026 Sum_probs=40.4
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCcc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~ 138 (754)
+|.+|+..+ .||.|+.|+++||.+|+.|++..+|.+.|+|+.|..
T Consensus 11 ~C~vC~~~g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 55 (61)
T 1mm2_A 11 FCRVCKDGG---ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTC 55 (61)
T ss_dssp SCTTTCCCS---SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTT
T ss_pred cCCCCCCCC---CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcC
Confidence 677777665 799999999999999999999999999999999863
No 18
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=3.1e-09 Score=86.01 Aligned_cols=44 Identities=34% Similarity=1.099 Sum_probs=39.6
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
+|.+|+..+ .||.|+.|+++||..|+.|++..+|.+.|+|+.|.
T Consensus 11 ~C~vC~~~g---~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 11 FCSVCRKSG---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SCSSSCCSS---CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCccCCCCC---eEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 567777765 89999999999999999999999999999999985
No 19
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.73 E-value=3.6e-09 Score=88.88 Aligned_cols=44 Identities=23% Similarity=0.612 Sum_probs=39.6
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
.|.+|+..+ .||+|+.|+++||++|+.|++..+|.+.|+|+.|.
T Consensus 14 ~C~vC~~~~---~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~ 57 (66)
T 2lri_C 14 RCGVCGDGT---DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCS 57 (66)
T ss_dssp CCTTTSCCT---TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTT
T ss_pred CcCCCCCCC---eEEECCCCCCceecccCCCccCcCCCCCEECcccc
Confidence 567777655 79999999999999999999999999999999985
No 20
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.73 E-value=5.4e-09 Score=86.19 Aligned_cols=45 Identities=31% Similarity=0.919 Sum_probs=40.6
Q ss_pred CccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 90 RICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 90 k~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
.+|.+|+..+ .||.|+.|+++||..|+.|++..+|.+.|+|+.|.
T Consensus 12 ~~C~vC~~~g---~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~ 56 (61)
T 2l5u_A 12 DYCEVCQQGG---EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCE 56 (61)
T ss_dssp SSCTTTSCCS---SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGG
T ss_pred CCCccCCCCC---cEEECCCCChhhhhhccCCCCCCCCCCceECcccc
Confidence 4777788765 89999999999999999999999999999999986
No 21
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.72 E-value=3.5e-09 Score=88.44 Aligned_cols=45 Identities=31% Similarity=0.890 Sum_probs=40.0
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCcc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~ 138 (754)
+|.+|+..+ .||.|+.|+++||..|+.|++..+|.+.|+|+.|..
T Consensus 10 ~C~vC~~~g---~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 10 ECAVCRDGG---ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SBSSSSCCS---SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCccCCCCC---CEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 566777665 799999999999999999999999999999999863
No 22
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.72 E-value=3.7e-09 Score=86.58 Aligned_cols=44 Identities=34% Similarity=1.099 Sum_probs=40.1
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
+|.+|+..+ .||.|+.|+++||..|+.|++..+|.+.|+|+.|.
T Consensus 7 ~C~vC~~~g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~ 50 (60)
T 2puy_A 7 FCSVCRKSG---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 50 (60)
T ss_dssp SCTTTCCCS---SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHH
T ss_pred CCcCCCCCC---cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhcc
Confidence 677778765 89999999999999999999999999999999985
No 23
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=98.70 E-value=6.1e-09 Score=94.86 Aligned_cols=109 Identities=17% Similarity=0.347 Sum_probs=71.1
Q ss_pred CCCccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCcccCCCCCCCCCCCCccccccCccccCCCcc
Q 004423 88 SCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGR 167 (754)
Q Consensus 88 ~Ck~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~~ 167 (754)
+|.+|.+|++.. |+.|...||..|++++ .|.|..|..+..++.. ...|..|
T Consensus 6 rC~~C~~C~~~~-------C~~C~~c~~~~~~~~~-------~~~~~~c~~~~~~~~~-------------~~~~~~c-- 56 (117)
T 4bbq_A 6 RCRKCKACVQGE-------CGVCHYCRDMKKFGGP-------GRMKQSCVLRQCLAPR-------------LPHSVTC-- 56 (117)
T ss_dssp CCSCSHHHHSCC-------CSCSHHHHHSGGGTSC-------CCSCCCCGGGCCSSCB-------------CCTTCBC--
T ss_pred cCCcCcCcCCcC-------CCCCCCCcCCcccCCC-------Cccccchhheeecccc-------------ccccccc--
Confidence 578888898653 9999999999998754 5888888754444321 1122222
Q ss_pred cccCCccCccccccccCC-CCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 168 LFVKGNYCPVCLKVYRDS-ESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 168 lf~KgnyCpVC~K~Y~Ds-dgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
.+|..|...+.+. ....||+|+.|..|||..|+++..+.+ +..+....|.|+.|...+
T Consensus 57 -----~~c~~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~--~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 57 -----SLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGL--LNEELPNCWECPKCYQED 115 (117)
T ss_dssp -----TTTCCBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCE--ECSSSSSEEECTTTC---
T ss_pred -----cccCcccccccccccCcceEEeeecCCeEECCCCCCCcccc--ccccCCCCeECCCCcCCC
Confidence 2455555555332 245689999999999999999764432 111223469999998765
No 24
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.65 E-value=2.6e-08 Score=88.31 Aligned_cols=56 Identities=20% Similarity=0.569 Sum_probs=45.4
Q ss_pred CCccccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCCcccccc
Q 004423 30 QSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICR 96 (754)
Q Consensus 30 ~s~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck~C~vC~ 96 (754)
...++++|.+|+.+| +||+|+.|.++||.+|+.|+... ++.+.|+|+.|..+...+
T Consensus 21 ~d~n~~~C~vC~~~g--------~LL~CD~C~~~fH~~Cl~PpL~~---~P~g~W~C~~C~~~~~~k 76 (88)
T 1fp0_A 21 LDDSATICRVCQKPG--------DLVMCNQCEFCFHLDCHLPALQD---VPGEEWSCSLCHVLPDLK 76 (88)
T ss_dssp SSSSSSCCSSSCSSS--------CCEECTTSSCEECTTSSSTTCCC---CCSSSCCCCSCCCCCSSC
T ss_pred cCCCCCcCcCcCCCC--------CEEECCCCCCceecccCCCCCCC---CcCCCcCCccccCCCccc
Confidence 344567999999876 89999999999999999987654 355899999997665544
No 25
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.61 E-value=1.1e-08 Score=90.17 Aligned_cols=48 Identities=25% Similarity=0.663 Sum_probs=41.6
Q ss_pred ccccccccCC--CCCceeCCCCCCccccccCCCCCcc----CCCCCcccCCCcc
Q 004423 91 ICEICRRTGD--PNKFMFCRRCDAAYHCYCQHPPHKN----VSSGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~sgd--~~kLL~Cd~C~raYH~~CL~Ppl~~----vp~g~W~CP~C~~ 138 (754)
+|.+|+.... .+.||+|+.|+++||++|+.|++.. +|.+.|+|+.|..
T Consensus 18 ~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 18 ACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp SCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred cCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 7888887654 3589999999999999999999884 8999999999875
No 26
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.59 E-value=2.7e-08 Score=83.60 Aligned_cols=47 Identities=23% Similarity=0.579 Sum_probs=39.3
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
+...|.+|+.++ +||+|+.|.++||.+||.++... ++.+.|+|+.|.
T Consensus 11 ~~~~C~vC~~~~--------~ll~Cd~C~~~~H~~Cl~P~l~~---~P~g~W~C~~C~ 57 (66)
T 2lri_C 11 PGARCGVCGDGT--------DVLRCTHCAAAFHWRCHFPAGTS---RPGTGLRCRSCS 57 (66)
T ss_dssp TTCCCTTTSCCT--------TCEECSSSCCEECHHHHCTTTCC---CCSSSCCCTTTT
T ss_pred CCCCcCCCCCCC--------eEEECCCCCCceecccCCCccCc---CCCCCEECcccc
Confidence 456899998765 89999999999999999987654 355899999983
No 27
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.59 E-value=2.4e-08 Score=82.31 Aligned_cols=48 Identities=31% Similarity=0.834 Sum_probs=40.1
Q ss_pred ccccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 32 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 32 ~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
..+.+|.+|..++ +||.|+.|.++||.+|+.++... ++.+.|+|+.|.
T Consensus 7 ~~~~~C~vC~~~g--------~ll~Cd~C~~~fH~~Cl~ppl~~---~p~g~W~C~~C~ 54 (61)
T 1mm2_A 7 HHMEFCRVCKDGG--------ELLCCDTCPSSYHIHCLNPPLPE---IPNGEWLCPRCT 54 (61)
T ss_dssp SSCSSCTTTCCCS--------SCBCCSSSCCCBCSSSSSSCCSS---CCSSCCCCTTTT
T ss_pred CCCCcCCCCCCCC--------CEEEcCCCCHHHcccccCCCcCc---CCCCccCChhhc
Confidence 3557999999765 89999999999999999987653 345899999993
No 28
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.56 E-value=1.3e-08 Score=84.40 Aligned_cols=48 Identities=29% Similarity=0.852 Sum_probs=40.4
Q ss_pred cccccccc--CCCCCceeCCCCCCccccccCCCCCcc--C-CCCCcccCCCcc
Q 004423 91 ICEICRRT--GDPNKFMFCRRCDAAYHCYCQHPPHKN--V-SSGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~s--gd~~kLL~Cd~C~raYH~~CL~Ppl~~--v-p~g~W~CP~C~~ 138 (754)
+|.+|+.. .+.+.||+|+.|+++||++|+.|++.. + |.+.|+|+.|..
T Consensus 8 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 8 VCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 67788876 334689999999999999999998875 4 889999999864
No 29
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.54 E-value=2.7e-08 Score=84.47 Aligned_cols=48 Identities=27% Similarity=0.593 Sum_probs=41.3
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCcc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~ 138 (754)
+|.+|+...+...||.|+.|+.|||..|++++...++.+.|+||.|..
T Consensus 20 ~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp CBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 566778776666899999999999999999988777788999999863
No 30
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.51 E-value=2.9e-08 Score=82.86 Aligned_cols=47 Identities=26% Similarity=0.797 Sum_probs=39.8
Q ss_pred ccccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCC
Q 004423 32 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 89 (754)
Q Consensus 32 ~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~C 89 (754)
.++.+|.+|..++ +||.|+.|.++||..|+.|+... ++.+.|+|+.|
T Consensus 6 ~~~~~C~vC~~~g--------~ll~CD~C~~~fH~~Cl~ppl~~---~P~g~W~C~~C 52 (66)
T 1xwh_A 6 KNEDECAVCRDGG--------ELICCDGCPRAFHLACLSPPLRE---IPSGTWRCSSC 52 (66)
T ss_dssp SCCCSBSSSSCCS--------SCEECSSCCCEECTTTSSSCCSS---CCSSCCCCHHH
T ss_pred CCCCCCccCCCCC--------CEEEcCCCChhhcccccCCCcCc---CCCCCeECccc
Confidence 4567999999865 89999999999999999987653 34589999888
No 31
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=98.51 E-value=1.3e-08 Score=85.24 Aligned_cols=54 Identities=26% Similarity=0.776 Sum_probs=46.3
Q ss_pred cCccccccccCCCCCCceecc-CcCCeecccCCCCChHHHhhhccCCCCceeCCCCC
Q 004423 174 YCPVCLKVYRDSESTPMVCCD-VCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 229 (754)
Q Consensus 174 yCpVC~K~Y~Dsdgg~MLqCD-sC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr 229 (754)
.|++|.+.|.+. ..||+|| .|..|||..|++|+.+.|..+...+...|+|+.|.
T Consensus 10 ~C~~C~~p~~~~--~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 10 PCGICTNEVNDD--QDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp BCTTTCSBCCTT--SCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCccCCCccCCC--CCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 588999988653 4799999 99999999999999988888765556799999985
No 32
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.50 E-value=5.5e-08 Score=80.16 Aligned_cols=47 Identities=28% Similarity=0.801 Sum_probs=39.6
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
.+.+|.+|..++ +||.|+.|.++||..|+.++... ++.+.|+|+.|.
T Consensus 10 ~~~~C~vC~~~g--------~ll~CD~C~~~fH~~Cl~p~l~~---~p~g~W~C~~C~ 56 (61)
T 2l5u_A 10 HQDYCEVCQQGG--------EIILCDTCPRAYHMVCLDPDMEK---APEGKWSCPHCE 56 (61)
T ss_dssp CCSSCTTTSCCS--------SEEECSSSSCEEEHHHHCTTCCS---CCCSSCCCTTGG
T ss_pred CCCCCccCCCCC--------cEEECCCCChhhhhhccCCCCCC---CCCCceECcccc
Confidence 456999999865 89999999999999999997543 345899999984
No 33
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.50 E-value=5.5e-08 Score=95.16 Aligned_cols=45 Identities=27% Similarity=0.837 Sum_probs=41.1
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCcc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~ 138 (754)
+|.+|+.+| .+|+|+.|+++||..|+.|++..+|.+.|+|+.|..
T Consensus 6 ~C~~C~~~g---~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~ 50 (184)
T 3o36_A 6 WCAVCQNGG---ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRD 50 (184)
T ss_dssp SCTTTCCCS---SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred ccccCCCCC---eeeecCCCCcccCccccCCCCCCCCCCCEECccccC
Confidence 677888776 699999999999999999999999999999999975
No 34
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.50 E-value=2.1e-08 Score=85.38 Aligned_cols=46 Identities=30% Similarity=0.762 Sum_probs=39.6
Q ss_pred CccccccccC--CCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 90 RICEICRRTG--DPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 90 k~C~vC~~sg--d~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
.+|.+|+..+ +++.||+|+.|+++||.+|++|+ .+|.+.|+|+.|.
T Consensus 17 ~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~--~vP~g~W~C~~C~ 64 (71)
T 2ku3_A 17 AVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCL 64 (71)
T ss_dssp CSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS--SCCSSCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC--cCCCCCcCCccCc
Confidence 3778888765 56689999999999999999986 4889999999985
No 35
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=3.3e-08 Score=79.97 Aligned_cols=48 Identities=29% Similarity=0.813 Sum_probs=40.0
Q ss_pred CccccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCC
Q 004423 31 SNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 89 (754)
Q Consensus 31 s~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~C 89 (754)
+..+.+|.+|..++ +||.|+.|.++||..|+.|+... ++.+.|+|+.|
T Consensus 6 ~~~~~~C~vC~~~g--------~ll~Cd~C~~~~H~~Cl~ppl~~---~p~g~W~C~~C 53 (56)
T 2yql_A 6 SGHEDFCSVCRKSG--------QLLMCDTCSRVYHLDCLDPPLKT---IPKGMWICPRC 53 (56)
T ss_dssp CSSCCSCSSSCCSS--------CCEECSSSSCEECSSSSSSCCCS---CCCSSCCCHHH
T ss_pred CCCCCCCccCCCCC--------eEEEcCCCCcceECccCCCCcCC---CCCCceEChhh
Confidence 34557999999865 89999999999999999987653 34589999988
No 36
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.49 E-value=3.6e-08 Score=80.71 Aligned_cols=47 Identities=28% Similarity=0.792 Sum_probs=39.7
Q ss_pred ccccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCC
Q 004423 32 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 89 (754)
Q Consensus 32 ~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~C 89 (754)
..+.+|.+|+.+| +||.|+.|.++||..|+.|+... ++.+.|+|+.|
T Consensus 3 ~~~~~C~vC~~~g--------~ll~Cd~C~~~fH~~Cl~ppl~~---~p~g~W~C~~C 49 (60)
T 2puy_A 3 IHEDFCSVCRKSG--------QLLMCDTCSRVYHLDCLDPPLKT---IPKGMWICPRC 49 (60)
T ss_dssp CCCSSCTTTCCCS--------SCEECSSSSCEECGGGSSSCCSS---CCCSCCCCHHH
T ss_pred CCCCCCcCCCCCC--------cEEEcCCCCcCEECCcCCCCcCC---CCCCceEChhc
Confidence 3567999999865 89999999999999999987653 34589999988
No 37
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.49 E-value=6.4e-08 Score=76.51 Aligned_cols=47 Identities=26% Similarity=0.803 Sum_probs=38.7
Q ss_pred ccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 36 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 36 ~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
.|.+|+.+++ .+.||.|+.|.++||..|+.|+... ++.+.|+|+.|.
T Consensus 2 ~C~vC~~~~~-----~~~ll~Cd~C~~~~H~~Cl~p~l~~---~P~g~W~C~~C~ 48 (51)
T 1f62_A 2 RCKVCRKKGE-----DDKLILCDECNKAFHLFCLRPALYE---VPDGEWQCPACQ 48 (51)
T ss_dssp CCTTTCCSSC-----CSCCEECTTTCCEECHHHHCTTCCS---CCSSCCSCTTTS
T ss_pred CCCCCCCCCC-----CCCEEECCCCChhhCcccCCCCcCC---CCCCcEECcCcc
Confidence 6999998763 2489999999999999999986543 345899999994
No 38
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.48 E-value=3.9e-08 Score=81.11 Aligned_cols=55 Identities=29% Similarity=0.824 Sum_probs=43.3
Q ss_pred CCccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 171 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 171 KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
...||++|.+.|.+ +..||+|+.|..|||..|+++..+.... ...|+|+.|+...
T Consensus 5 e~~~C~~C~~~~~~--~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~-----~~~~~C~~C~~k~ 59 (64)
T 1we9_A 5 SSGQCGACGESYAA--DEFWICCDLCEMWFHGKCVKITPARAEH-----IKQYKCPSCSNKS 59 (64)
T ss_dssp SCCCCSSSCCCCCS--SSCEEECSSSCCEEETTTTTCCTTGGGG-----CSSCCCHHHHTTT
T ss_pred CCCCCCCCCCccCC--CCCEEEccCCCCCCCccccCcChhHhcC-----CCcEECCCCcCcC
Confidence 45689999998754 4679999999999999999987654322 2479999998643
No 39
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.47 E-value=5.8e-08 Score=96.86 Aligned_cols=47 Identities=23% Similarity=0.749 Sum_probs=42.0
Q ss_pred CccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCccc
Q 004423 90 RICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKC 139 (754)
Q Consensus 90 k~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~C 139 (754)
.+|.+|+.+| .+|+|+.|+++||..|+.|++..+|.+.|+||.|...
T Consensus 8 ~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 8 DWCAVCQNGG---DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSBTTTCCCE---EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCC---ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 3677888777 6999999999999999999999999999999998753
No 40
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.46 E-value=2.4e-08 Score=88.16 Aligned_cols=46 Identities=30% Similarity=0.771 Sum_probs=39.3
Q ss_pred ccccccccC--CCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCcc
Q 004423 91 ICEICRRTG--DPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~sg--d~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~ 138 (754)
+|.+|+..+ +.+.||+|+.|+.+||++|+.|++ +|.+.|+|+.|..
T Consensus 27 ~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~ 74 (88)
T 2l43_A 27 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 74 (88)
T ss_dssp CCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHH
T ss_pred cCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccC
Confidence 677888765 455899999999999999999874 8899999999863
No 41
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.44 E-value=3.5e-08 Score=81.75 Aligned_cols=57 Identities=25% Similarity=0.612 Sum_probs=42.0
Q ss_pred CccccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 31 SNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 31 s~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
+.++.+|.+|+.+.. ...+.||+|+.|.++||.+|+.|+.......+.+.|+|+.|.
T Consensus 3 ~~~~~~C~vC~~~~~---~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~ 59 (66)
T 2yt5_A 3 SGSSGVCTICQEEYS---EAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCV 59 (66)
T ss_dssp CCCCCCBSSSCCCCC---BTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHH
T ss_pred CCCCCCCCCCCCCCC---CCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCc
Confidence 345579999998631 123499999999999999999997543211145899999884
No 42
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.42 E-value=1.1e-07 Score=93.99 Aligned_cols=45 Identities=24% Similarity=0.826 Sum_probs=41.5
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCcc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~ 138 (754)
+|.+|+.+| .++.|+.|+++||..|+.|++..+|.+.|+|+.|..
T Consensus 4 ~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~ 48 (189)
T 2ro1_A 4 ICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 48 (189)
T ss_dssp CBTTTCCCS---SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSC
T ss_pred cCccCCCCC---ceeECCCCCchhccccCCCCcccCCCCCCCCcCccC
Confidence 688889777 799999999999999999999999999999999974
No 43
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=98.42 E-value=5.2e-08 Score=88.48 Aligned_cols=56 Identities=23% Similarity=0.713 Sum_probs=47.4
Q ss_pred cCccccccccCCCCCCceecc-CcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 174 YCPVCLKVYRDSESTPMVCCD-VCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 174 yCpVC~K~Y~Dsdgg~MLqCD-sC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
.|++|.+.|.+. +.||+|+ .|..|||..|++|+.+.+..+...++..|+|+.|+..
T Consensus 5 ~C~iC~~p~~~~--~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 5 PCGACRSEVNDD--QDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp BCTTTCSBCCTT--SCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCccCCC--CCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 599999998653 4699998 9999999999999988888774455679999999864
No 44
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.39 E-value=1.4e-07 Score=92.26 Aligned_cols=47 Identities=32% Similarity=0.783 Sum_probs=40.0
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
++++|.+|+.+| +||+|+.|.++||..|+.|+... ++.+.|.|+.|+
T Consensus 3 ~~~~C~~C~~~g--------~ll~Cd~C~~~~H~~C~~p~l~~---~p~~~W~C~~C~ 49 (184)
T 3o36_A 3 NEDWCAVCQNGG--------ELLCCEKCPKVFHLSCHVPTLTN---FPSGEWICTFCR 49 (184)
T ss_dssp SCSSCTTTCCCS--------SCEECSSSSCEECTTTSSSCCSS---CCSSCCCCTTTS
T ss_pred CCCccccCCCCC--------eeeecCCCCcccCccccCCCCCC---CCCCCEECcccc
Confidence 567999999876 79999999999999999987653 345899999984
No 45
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.37 E-value=1.2e-07 Score=84.21 Aligned_cols=50 Identities=28% Similarity=0.818 Sum_probs=40.9
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
.+.+|.+|..+++ .+.||.|+.|.++||+.||.|+... ++.+.|+|+.|.
T Consensus 15 ~~~~C~vC~~~~~-----~~~ll~CD~C~~~~H~~Cl~Ppl~~---~P~g~W~C~~C~ 64 (92)
T 2e6r_A 15 DSYICQVCSRGDE-----DDKLLFCDGCDDNYHIFCLLPPLPE---IPRGIWRCPKCI 64 (92)
T ss_dssp CCCCCSSSCCSGG-----GGGCEECTTTCCEECSSSSSSCCSS---CCSSCCCCHHHH
T ss_pred CCCCCccCCCcCC-----CCCEEEcCCCCchhccccCCCCccc---CCCCCcCCccCc
Confidence 4468999998763 2389999999999999999987653 355899999994
No 46
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.36 E-value=1.8e-07 Score=93.25 Aligned_cols=47 Identities=30% Similarity=0.745 Sum_probs=40.0
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
++++|.+|+.+| +||+|+.|.++||..|+.|+... ++.+.|.|+.|.
T Consensus 6 ~~~~C~~C~~~g--------~ll~Cd~C~~~~H~~Cl~p~l~~---~p~~~W~C~~C~ 52 (207)
T 3u5n_A 6 NEDWCAVCQNGG--------DLLCCEKCPKVFHLTCHVPTLLS---FPSGDWICTFCR 52 (207)
T ss_dssp SCSSBTTTCCCE--------EEEECSSSSCEECTTTSSSCCSS---CCSSCCCCTTTS
T ss_pred CCCCCCCCCCCC--------ceEEcCCCCCccCCccCCCCCCC---CCCCCEEeCcee
Confidence 457999999876 79999999999999999987653 345899999984
No 47
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.35 E-value=1.2e-07 Score=83.61 Aligned_cols=50 Identities=24% Similarity=0.700 Sum_probs=40.3
Q ss_pred ccccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCC
Q 004423 32 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 89 (754)
Q Consensus 32 ~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~C 89 (754)
..+.+|.+|..++. ...++||+|+.|..+||.+|++++. ++.+.|+|+.|
T Consensus 23 ~~~~~C~vC~~~~s---~~~~~ll~CD~C~~~fH~~Cl~p~~-----vP~g~W~C~~C 72 (88)
T 2l43_A 23 DEDAVCSICMDGES---QNSNVILFCDMCNLAVHQECYGVPY-----IPEGQWLCRHC 72 (88)
T ss_dssp CCCCCCSSCCSSSS---CSEEEEEECSSSCCCCCHHHHTCSS-----CCSSCCCCHHH
T ss_pred CCCCcCCcCCCCCC---CCCCCEEECCCCCchhhcccCCCCc-----cCCCceECccc
Confidence 35579999998651 2335999999999999999999863 35589999988
No 48
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.34 E-value=1.2e-07 Score=83.59 Aligned_cols=54 Identities=20% Similarity=0.610 Sum_probs=41.6
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccc-cCCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRD-LFHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~-~v~~~~W~Cp~Ck 90 (754)
+.+|.+|..+.. ...+.||+|+.|.++||++|+.|+....+ .++.+.|+|+.|.
T Consensus 16 ~~~C~vC~~~~~---~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~ 70 (88)
T 1wev_A 16 GLACVVCRQMTV---ASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT 70 (88)
T ss_dssp CCSCSSSCCCCC---CTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHH
T ss_pred CCcCCCCCCCCC---CCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCcccc
Confidence 469999998642 12348999999999999999999765311 1456899999884
No 49
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.33 E-value=1.7e-07 Score=79.75 Aligned_cols=50 Identities=24% Similarity=0.695 Sum_probs=40.4
Q ss_pred ccccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCC
Q 004423 32 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 89 (754)
Q Consensus 32 ~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~C 89 (754)
..+.+|.+|+.++ +...++||+|+.|.++||.+|++++. ++.+.|+|+.|
T Consensus 14 ~~~~~C~vC~~~~---s~~~~~ll~CD~C~~~~H~~Cl~~~~-----vP~g~W~C~~C 63 (71)
T 2ku3_A 14 DEDAVCSICMDGE---SQNSNVILFCDMCNLAVHQECYGVPY-----IPEGQWLCRHC 63 (71)
T ss_dssp CSSCSCSSSCCCC---CCSSSCEEECSSSCCEEEHHHHTCSS-----CCSSCCCCHHH
T ss_pred CCCCCCCCCCCCC---CCCCCCEEECCCCCCccccccCCCCc-----CCCCCcCCccC
Confidence 3457999999865 22345999999999999999999863 35689999988
No 50
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.29 E-value=3.7e-07 Score=81.79 Aligned_cols=43 Identities=26% Similarity=0.607 Sum_probs=36.5
Q ss_pred cccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 94 ICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 94 vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
+|+...+...||.|+.|+.|||..|++++...+|. .|+|+.|.
T Consensus 32 iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~C~~C~ 74 (98)
T 2lv9_A 32 ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQ 74 (98)
T ss_dssp TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBCCTTTS
T ss_pred ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEECCCCc
Confidence 56666666689999999999999999998777774 79999985
No 51
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.26 E-value=4e-07 Score=78.34 Aligned_cols=53 Identities=34% Similarity=0.849 Sum_probs=41.7
Q ss_pred CccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 172 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 172 gnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
..|| +|.+.|. ++..||+|+.|..|||..|+++..+.... ...|+|+.|+...
T Consensus 12 ~~~C-~C~~~~d--~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~-----~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYN--VNHFMIECGLCQDWFHGSCVGIEEENAVD-----IDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCC--SSSCEEEBTTTCCEEEHHHHTCCHHHHTT-----CSBBCCTTTTTTS
T ss_pred ccEE-EcCCccC--CCCceEEcCCCCCcEEeeecCcccccccC-----CCeEECCCccccc
Confidence 4577 7988774 35689999999999999999998765422 2489999999753
No 52
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.25 E-value=1e-07 Score=91.19 Aligned_cols=44 Identities=18% Similarity=0.463 Sum_probs=39.3
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCc-----c--CCCCCcccCCCc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHK-----N--VSSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~-----~--vp~g~W~CP~C~ 137 (754)
+|.+|+.+| .++.|+.|+++||..|+.|++. . .|.+.|.|+.|.
T Consensus 65 ~C~vC~~GG---~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 65 QCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp SCSSSCCCS---SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred eecccCCCC---cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 889999888 8999999999999999998775 2 488999999985
No 53
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=6.1e-07 Score=77.50 Aligned_cols=50 Identities=30% Similarity=0.678 Sum_probs=39.3
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCC-CccCCCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWS-SWKCPSCR 90 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~-~W~Cp~Ck 90 (754)
.+.+|.+|+..++ .++||.|+.|.++||++||+|+.... +.+ .|+|+.|.
T Consensus 25 ~~c~C~vC~~~~~-----~~~ll~CD~C~~~yH~~Cl~Ppl~~~---P~g~~W~C~~C~ 75 (77)
T 2e6s_A 25 HSCSCRVCGGKHE-----PNMQLLCDECNVAYHIYCLNPPLDKV---PEEEYWYCPSCK 75 (77)
T ss_dssp SSSSCSSSCCCCC-----STTEEECSSSCCEEETTSSSSCCSSC---CCSSCCCCTTTC
T ss_pred CCCCCcCcCCcCC-----CCCEEEcCCCCccccccccCCCccCC---CCCCCcCCcCcc
Confidence 3457888887543 24999999999999999999876543 456 89999994
No 54
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=98.23 E-value=8.8e-07 Score=70.73 Aligned_cols=47 Identities=32% Similarity=0.701 Sum_probs=37.3
Q ss_pred CccccccccCCCCCCceecc-CcCCeecccCCCCChHHHhhhccCCCCceeCCCCC
Q 004423 175 CPVCLKVYRDSESTPMVCCD-VCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 229 (754)
Q Consensus 175 CpVC~K~Y~Dsdgg~MLqCD-sC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr 229 (754)
|.+|.+.|.+ +..||+|+ .|..|||..|+++..+.... ..|+|+.|+
T Consensus 5 cc~C~~p~~~--~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~------~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKD--KVDWVQCDGGCDEWFHQVCVGVSPEMAEN------EDYICINCA 52 (52)
T ss_dssp CTTCCCCCCT--TCCEEECTTTTCCEEETTTTTCCHHHHHH------SCCCCSCC-
T ss_pred CCCCcCccCC--CCcEEEeCCCCCccCcccccCCCccccCC------CCEECCCCC
Confidence 6788888744 56799999 89999999999998664321 479999995
No 55
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.21 E-value=7.2e-07 Score=75.58 Aligned_cols=47 Identities=30% Similarity=0.755 Sum_probs=36.4
Q ss_pred ccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCC-CccCCCCC
Q 004423 36 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWS-SWKCPSCR 90 (754)
Q Consensus 36 ~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~-~W~Cp~Ck 90 (754)
.|.+|+..++ .+.||.|+.|.++||++||+|+.... +.+ .|+|+.|.
T Consensus 20 ~C~~C~~~~~-----~~~ll~CD~C~~~yH~~Cl~Ppl~~~---P~g~~W~C~~C~ 67 (70)
T 3asl_A 20 ACHLCGGRQD-----PDKQLMCDECDMAFHIYCLDPPLSSV---PSEDEWYCPECR 67 (70)
T ss_dssp SBTTTCCCSC-----GGGEEECTTTCCEEEGGGSSSCCSSC---CSSSCCCCTTTS
T ss_pred CCcCCCCcCC-----CCCEEEcCCCCCceecccCCCCcCCC---CCCCCcCCcCcc
Confidence 5566665432 23999999999999999999876543 446 99999994
No 56
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.18 E-value=5.9e-07 Score=88.91 Aligned_cols=46 Identities=24% Similarity=0.684 Sum_probs=39.2
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
++.|.+|+.+| +||+|+.|.++||..|+.|+... ++.+.|.|+.|.
T Consensus 2 ~~~C~~C~~~g--------~ll~Cd~C~~~~H~~Cl~p~l~~---~p~g~W~C~~C~ 47 (189)
T 2ro1_A 2 ATICRVCQKPG--------DLVMCNQCEFCFHLDCHLPALQD---VPGEEWSCSLCH 47 (189)
T ss_dssp CCCBTTTCCCS--------SCCCCTTTCCBCCSTTSTTCCSS---CCCTTCCTTTTS
T ss_pred CCcCccCCCCC--------ceeECCCCCchhccccCCCCccc---CCCCCCCCcCcc
Confidence 46899999876 89999999999999999987653 345899999994
No 57
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.14 E-value=1.4e-06 Score=73.84 Aligned_cols=50 Identities=26% Similarity=0.664 Sum_probs=39.9
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
...+|.+|....+ .+.||.|+.|.++||..|++++....+ ...|+|+.|.
T Consensus 17 ~~~~C~~C~~~~~-----~~~mi~CD~C~~wfH~~Cv~~~~~~~~---~~~w~C~~C~ 66 (75)
T 2k16_A 17 QIWICPGCNKPDD-----GSPMIGCDDCDDWYHWPCVGIMAAPPE---EMQWFCPKCA 66 (75)
T ss_dssp EEECBTTTTBCCS-----SCCEEECSSSSSEEEHHHHTCSSCCCS---SSCCCCTTTH
T ss_pred CCcCCCCCCCCCC-----CCCEEEcCCCCcccccccCCCCccCCC---CCCEEChhcc
Confidence 4568999988653 237999999999999999999765432 3789999983
No 58
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.09 E-value=3.5e-07 Score=77.96 Aligned_cols=56 Identities=32% Similarity=0.824 Sum_probs=41.7
Q ss_pred CccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 172 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 172 gnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
..|| +|.+.+. +..||+|+.|..|||..|+++.......+.. ....|+|+.|+...
T Consensus 16 ~~~C-~C~~~~~---~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~-~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHN---NRFMICCDRCEEWFHGDCVGISEARGRLLER-NGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCC---SSCEEECSSSCCEEEHHHHSCCHHHHHHHHH-HTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccC---CCCEEEeCCCCCcEeCeEEccchhhhhhccC-CCCeEECcCCcCcc
Confidence 3577 7988764 4579999999999999999998765443311 13589999997543
No 59
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.07 E-value=1.8e-06 Score=74.67 Aligned_cols=47 Identities=30% Similarity=0.757 Sum_probs=36.1
Q ss_pred ccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCC-ccCCCCC
Q 004423 36 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSS-WKCPSCR 90 (754)
Q Consensus 36 ~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~-W~Cp~Ck 90 (754)
.|.+|+..++ .+.||+|+.|.++||.+||.|+.... +.+. |+|+.|+
T Consensus 28 ~C~vC~~~~d-----~~~ll~CD~C~~~yH~~Cl~PpL~~~---P~g~~W~C~~C~ 75 (77)
T 3shb_A 28 ACHLCGGRQD-----PDKQLMCDECDMAFHIYCLDPPLSSV---PSEDEWYCPECR 75 (77)
T ss_dssp SBTTTCCCSC-----GGGEEECTTTCCEEETTTSSSCCSSC---CSSSCCCCTTTC
T ss_pred cCCccCCCCC-----CcceeEeCCCCCccCcccCCCcccCC---CCCCceECcCcc
Confidence 5556655442 34899999999999999999986543 4466 9999994
No 60
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.06 E-value=3e-06 Score=72.05 Aligned_cols=50 Identities=32% Similarity=0.849 Sum_probs=38.2
Q ss_pred CCccCccccccccCCCCCCceeccC--cC-CeecccCCCCChHHHhhhccCCCCceeCCCCCCCCC
Q 004423 171 KGNYCPVCLKVYRDSESTPMVCCDV--CQ-RWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECY 233 (754)
Q Consensus 171 KgnyCpVC~K~Y~Dsdgg~MLqCDs--C~-~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~~ 233 (754)
...|| +|.+.+ .+.||+||. |+ .|||..|++|... +.+.|+|+.|+....
T Consensus 15 ~~~~C-~C~~~~----~g~MI~CD~~~C~~~wfH~~Cvgl~~~--------p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVS----YGEMIGCDNPDCSIEWFHFACVGLTTK--------PRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCS----CSSEECCSCSSCSCCCEETTTTTCSSC--------CSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCC----CCCEeEeeCCCCCCccEecccCCcCcC--------CCCCEECCCCCcccc
Confidence 34578 698764 357999999 88 7999999997532 346899999987543
No 61
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.05 E-value=2.5e-06 Score=76.05 Aligned_cols=50 Identities=32% Similarity=0.849 Sum_probs=38.7
Q ss_pred CCccCccccccccCCCCCCceeccC--cC-CeecccCCCCChHHHhhhccCCCCceeCCCCCCCCC
Q 004423 171 KGNYCPVCLKVYRDSESTPMVCCDV--CQ-RWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECY 233 (754)
Q Consensus 171 KgnyCpVC~K~Y~Dsdgg~MLqCDs--C~-~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~~ 233 (754)
...|| +|.+.+ .+.||+||. |+ .|||..|++|... +.+.|+|+.|+....
T Consensus 35 e~~yC-iC~~~~----~g~MI~CD~~dC~~~WfH~~CVgl~~~--------p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVS----YGEMIGCDNPDCSIEWFHFACVGLTTK--------PRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBC----CSCCCCCSCSSCSCCCCCSTTTTCSSC--------CCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCC----CCCEeEecCCCCCCCCEecccCCcCcC--------CCCCEECcCccCcCC
Confidence 34578 898864 357999999 77 7999999997542 246899999987543
No 62
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.04 E-value=2.7e-06 Score=72.37 Aligned_cols=44 Identities=20% Similarity=0.717 Sum_probs=35.8
Q ss_pred ccccccccCCCCCceeCCC--CC-CccccccCCCCCccCCCCCcccCCCcc
Q 004423 91 ICEICRRTGDPNKFMFCRR--CD-AAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~--C~-raYH~~CL~Ppl~~vp~g~W~CP~C~~ 138 (754)
+| +|++... ..||.|+. |+ .|||..|++ +..+|.+.|+||.|..
T Consensus 18 ~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~ 64 (71)
T 1wen_A 18 YC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 64 (71)
T ss_dssp CS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSS
T ss_pred EE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCc
Confidence 55 6777543 47999999 77 699999999 5677889999999863
No 63
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.01 E-value=1.2e-06 Score=83.80 Aligned_cols=53 Identities=19% Similarity=0.617 Sum_probs=42.2
Q ss_pred CCccccccccccccccCCccCCCceEEeCcCCCccchhccCCCcccc---cc-CCCCCccCCCCC
Q 004423 30 QSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNR---DL-FHWSSWKCPSCR 90 (754)
Q Consensus 30 ~s~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~---~~-v~~~~W~Cp~Ck 90 (754)
.+..+++|.+|..+| +||+|+.|++.||..||.++..+. .. .+.+.|.|+.|.
T Consensus 59 ~Dg~~d~C~vC~~GG--------~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGG--------NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp TTSCBCSCSSSCCCS--------SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCCCeecccCCCC--------cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 344568999999988 999999999999999999765421 11 256899999994
No 64
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.00 E-value=1.6e-06 Score=73.14 Aligned_cols=49 Identities=31% Similarity=0.859 Sum_probs=38.0
Q ss_pred CccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 172 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 172 gnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
..|| +|++.+. +..||+|+.|..|||..|+++.... + ...|+|+.|+..
T Consensus 19 ~~~C-iC~~~~~---~~~MIqCd~C~~WfH~~Cvgi~~~~-----~--~~~~~C~~C~~s 67 (68)
T 3o70_A 19 LVTC-FCMKPFA---GRPMIECNECHTWIHLSCAKIRKSN-----V--PEVFVCQKCRDS 67 (68)
T ss_dssp CCCS-TTCCCCT---TCCEEECTTTCCEEETTTTTCCTTS-----C--CSSCCCHHHHTC
T ss_pred ceEe-ECCCcCC---CCCEEECCCCCccccccccCcCccc-----C--CCcEECCCCCCC
Confidence 4577 8887653 5679999999999999999987542 1 248999999753
No 65
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.97 E-value=4.2e-06 Score=74.58 Aligned_cols=43 Identities=21% Similarity=0.722 Sum_probs=35.0
Q ss_pred ccccccccCCCCCceeCCC--CC-CccccccCCCCCccCCCCCcccCCCc
Q 004423 91 ICEICRRTGDPNKFMFCRR--CD-AAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~--C~-raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
+| +|++... ..||.|+. |+ .|||..|+. +...|.+.|+||.|.
T Consensus 38 yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~ 83 (91)
T 1weu_A 38 YC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCS 83 (91)
T ss_dssp CS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTC
T ss_pred EE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCcc
Confidence 55 7777543 47999999 77 799999999 566778999999986
No 66
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.97 E-value=1.8e-06 Score=78.54 Aligned_cols=93 Identities=20% Similarity=0.311 Sum_probs=58.5
Q ss_pred ccccccccccCCccCCCceEEeCcCCCccchhccCCCcccccc---------CCCCCccCCCCCccccccccCC-CCCce
Q 004423 36 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDL---------FHWSSWKCPSCRICEICRRTGD-PNKFM 105 (754)
Q Consensus 36 ~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~---------v~~~~W~Cp~Ck~C~vC~~sgd-~~kLL 105 (754)
.|.+|...+.. -|..|...||..|++.+...... .....+.|..|..|..|....+ +..||
T Consensus 6 rC~~C~~C~~~---------~C~~C~~c~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~c~~c~~c~~c~~~~~~~~~m~ 76 (117)
T 4bbq_A 6 RCRKCKACVQG---------ECGVCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLM 76 (117)
T ss_dssp CCSCSHHHHSC---------CCSCSHHHHHSGGGTSCCCSCCCCGGGCCSSCBCCTTCBCTTTCCBCCHHHHCCGGGSCE
T ss_pred cCCcCcCcCCc---------CCCCCCCCcCCcccCCCCccccchhheeeccccccccccccccCcccccccccccCcceE
Confidence 56666555421 29999999999999876432110 0012233334444444443333 33689
Q ss_pred eCCCCCCccccccCCCCCccCC----CCCcccCCCc
Q 004423 106 FCRRCDAAYHCYCQHPPHKNVS----SGPYLCPKHT 137 (754)
Q Consensus 106 ~Cd~C~raYH~~CL~Ppl~~vp----~g~W~CP~C~ 137 (754)
.|+.|..|||..|+.++...+. ...|.||.|.
T Consensus 77 ~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~ 112 (117)
T 4bbq_A 77 ECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCY 112 (117)
T ss_dssp EETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC
T ss_pred EeeecCCeEECCCCCCCccccccccCCCCeECCCCc
Confidence 9999999999999997654332 3459999985
No 67
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=97.94 E-value=3.6e-06 Score=85.88 Aligned_cols=49 Identities=29% Similarity=0.710 Sum_probs=36.0
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCC-CccCCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWS-SWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~-~W~Cp~Ck 90 (754)
+..|.+|+..++ .+.||+|+.|.++||+.||+|+.... +.+ .|.|+.|.
T Consensus 174 ~c~C~vC~~~~~-----~~~lL~CD~C~~~yH~~CL~PPL~~v---P~G~~W~Cp~C~ 223 (226)
T 3ask_A 174 VCACHLCGGRQD-----PDKQLMCDECDMAFHIYCLDPPLSSV---PSEDEWYCPECR 223 (226)
T ss_dssp TTSCSSSCCCCC-------CCEECSSSCCEECSCC--CCCCSC---CSSSCCCCGGGC
T ss_pred CCCCcCCCCCCC-----CCCeEEcCCCCcceeCccCCCCcccC---CCCCCCCCcCCc
Confidence 446888877543 24999999999999999999876543 456 89999994
No 68
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.91 E-value=2.3e-06 Score=70.39 Aligned_cols=43 Identities=21% Similarity=0.722 Sum_probs=35.5
Q ss_pred ccccccccCCCCCceeCCC--CC-CccccccCCCCCccCCCCCcccCCCc
Q 004423 91 ICEICRRTGDPNKFMFCRR--CD-AAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~--C~-raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
+| +|++... ..||.|+. |+ .|||..|++ +..+|.+.|+||.|.
T Consensus 12 ~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~ 57 (60)
T 2vnf_A 12 YC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCS 57 (60)
T ss_dssp ET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHH
T ss_pred EE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCcc
Confidence 55 7887653 47999999 66 899999999 667788999999985
No 69
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.89 E-value=2.9e-06 Score=71.77 Aligned_cols=50 Identities=26% Similarity=0.588 Sum_probs=37.3
Q ss_pred ccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 173 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 173 nyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
.|| +|.+.+. ++..||+|+.|..|||..|+++.... .....|+|+.|+..
T Consensus 17 ~~C-~C~~~~~--~g~~mI~Cd~C~~W~H~~Cvg~~~~~------~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 17 VDC-KCGTKDD--DGERMLACDGCGVWHHTRCIGINNAD------ALPSKFLCFRCIEL 66 (72)
T ss_dssp ECC-TTCCCSC--CSSCEEECSSSCEEEETTTTTCCTTS------CCCSCCCCHHHHHH
T ss_pred eEe-eCCCccC--CCCcEEECCCCCCccCCeeeccCccc------cCCCcEECCCccCC
Confidence 467 5887653 34579999999999999999986431 11358999999753
No 70
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.88 E-value=1.6e-06 Score=83.79 Aligned_cols=53 Identities=34% Similarity=0.733 Sum_probs=41.3
Q ss_pred CCccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 171 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 171 KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
...|| +|.+.+. +++.||+|+.|+.|||..|+++...... ....|+|+.|+..
T Consensus 7 ~~~~C-~C~~~~~--~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~-----~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPED--ESKFYIGCDRCQNWYHGRCVGILQSEAE-----LIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECC--TTSCEEECTTTCCEEEHHHHTCCHHHHT-----TCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCC--CCCCEeECCCCCchhChhhcCCchhhcc-----CccCeecCCCcch
Confidence 45689 9998763 3568999999999999999998765421 2358999999853
No 71
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.86 E-value=3.1e-06 Score=69.49 Aligned_cols=43 Identities=21% Similarity=0.718 Sum_probs=35.2
Q ss_pred ccccccccCCCCCceeCCC--CC-CccccccCCCCCccCCCCCcccCCCc
Q 004423 91 ICEICRRTGDPNKFMFCRR--CD-AAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~--C~-raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
+| +|++... ..||.|+. |+ .|||..|++ +...|.+.|+||.|.
T Consensus 11 yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~ 56 (59)
T 3c6w_A 11 YC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCV 56 (59)
T ss_dssp ET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHH
T ss_pred EE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCcc
Confidence 55 7887543 47999999 77 699999999 566778999999985
No 72
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.86 E-value=1.9e-06 Score=71.54 Aligned_cols=47 Identities=34% Similarity=0.948 Sum_probs=36.6
Q ss_pred CccCccccccccCCCCCCceeccC--cC-CeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 172 GNYCPVCLKVYRDSESTPMVCCDV--CQ-RWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 172 gnyCpVC~K~Y~Dsdgg~MLqCDs--C~-~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
..|| +|.+.+ .+.||+||. |+ .|||..|+++... +.+.|+|+.|+..
T Consensus 11 ~~yC-~C~~~~----~g~MI~CD~c~C~~~WfH~~Cvgl~~~--------p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 11 PTYC-LCNQVS----YGEMIGCDNEQCPIEWFHFSCVSLTYK--------PKGKWYCPKCRGD 60 (62)
T ss_dssp CEET-TTTEEC----CSEEEECSCTTCSSCEEETGGGTCSSC--------CSSCCCCHHHHTC
T ss_pred CcEE-ECCCCC----CCCeeeeeCCCCCcccEecccCCcCcC--------CCCCEECcCcccC
Confidence 4578 798763 357999999 66 9999999997642 3468999999754
No 73
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.85 E-value=1.9e-06 Score=70.84 Aligned_cols=46 Identities=30% Similarity=0.857 Sum_probs=36.2
Q ss_pred CccCccccccccCCCCCCceeccC--cC-CeecccCCCCChHHHhhhccCCCCceeCCCCCC
Q 004423 172 GNYCPVCLKVYRDSESTPMVCCDV--CQ-RWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 230 (754)
Q Consensus 172 gnyCpVC~K~Y~Dsdgg~MLqCDs--C~-~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~ 230 (754)
..|| +|.+.+ .+.||+||. |+ .|||..|+++... +.+.|+|+.|+.
T Consensus 9 ~~yC-~C~~~~----~g~mi~CD~~~C~~~wfH~~Cvgl~~~--------p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS----YGEMIGCDNPDCPIEWFHFACVDLTTK--------PKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC----CSEEEECSCTTCSSCEEETGGGTCSSC--------CSSCCCCHHHHC
T ss_pred CcEE-ECCCCC----CCCeeEeeCCCCCCCCEecccCCcccC--------CCCCEECcCccC
Confidence 4578 798764 357999999 88 6999999997542 346899999975
No 74
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.83 E-value=6.1e-06 Score=73.41 Aligned_cols=43 Identities=23% Similarity=0.550 Sum_probs=34.3
Q ss_pred ccccccccCCCCCceeCCCCC---CccccccCCCCCccCCCCCcccCC-Cc
Q 004423 91 ICEICRRTGDPNKFMFCRRCD---AAYHCYCQHPPHKNVSSGPYLCPK-HT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~---raYH~~CL~Ppl~~vp~g~W~CP~-C~ 137 (754)
+| +|+..... .||.|+.|+ .|||..|++ +...|.+.|+||. |.
T Consensus 28 yC-iC~~~~~g-~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 28 YC-FCRNVSYG-PMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK 74 (90)
T ss_dssp CS-TTTCCCSS-SEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred EE-EeCCCCCC-CEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence 45 67765433 699999976 899999999 5567789999999 74
No 75
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.83 E-value=6.3e-06 Score=69.50 Aligned_cols=45 Identities=22% Similarity=0.551 Sum_probs=37.0
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
+| +|+.+.+...||.|+.|..|||..|++.....++ ..|+|+.|.
T Consensus 21 ~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~ 65 (68)
T 3o70_A 21 TC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCR 65 (68)
T ss_dssp CS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHH
T ss_pred Ee-ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCC
Confidence 45 8888776667999999999999999997655444 689999985
No 76
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.81 E-value=2.5e-06 Score=72.72 Aligned_cols=51 Identities=35% Similarity=0.861 Sum_probs=37.9
Q ss_pred CccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCC
Q 004423 172 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 230 (754)
Q Consensus 172 gnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~ 230 (754)
..|| +|.+.|. ++..||+|+.|..|||..|+++....... ...|+|+.|+.
T Consensus 10 ~~yC-iC~~~~~--~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~-----~~~~~C~~C~~ 60 (75)
T 3kqi_A 10 PVYC-VCRLPYD--VTRFMIECDACKDWFHGSCVGVEEEEAPD-----IDIYHCPNCEK 60 (75)
T ss_dssp CEET-TTTEECC--TTSCEEECTTTCCEEEHHHHTCCTTTGGG-----BSSCCCHHHHH
T ss_pred eeEE-ECCCcCC--CCCCEEEcCCCCCCEecccccccccccCC-----CCEEECCCCcc
Confidence 3456 6887663 35689999999999999999987543211 13799999974
No 77
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.80 E-value=4.7e-06 Score=69.12 Aligned_cols=43 Identities=23% Similarity=0.685 Sum_probs=34.7
Q ss_pred ccccccccCCCCCceeCCC--CC-CccccccCCCCCccCCCCCcccCCCc
Q 004423 91 ICEICRRTGDPNKFMFCRR--CD-AAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~--C~-raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
+| +|++... ..||.|+. |+ .|||..|++ +...|.+.|+||.|.
T Consensus 13 yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~ 58 (62)
T 2g6q_A 13 YC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCR 58 (62)
T ss_dssp ET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHH
T ss_pred EE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcc
Confidence 55 7787543 37999999 55 999999999 456678999999985
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.73 E-value=8.5e-06 Score=67.06 Aligned_cols=47 Identities=19% Similarity=0.521 Sum_probs=36.1
Q ss_pred ccccccccCC-CCCceeCCCCCCccccccCCCCCccCC-CCCcccCCCc
Q 004423 91 ICEICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKNVS-SGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd-~~kLL~Cd~C~raYH~~CL~Ppl~~vp-~g~W~CP~C~ 137 (754)
+|.+|+.+.+ ...||.|+.|..|||..|++....... ...|+|+.|.
T Consensus 8 ~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~ 56 (64)
T 1we9_A 8 QCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCS 56 (64)
T ss_dssp CCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHH
T ss_pred CCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCc
Confidence 4556777654 357999999999999999997554433 3789999985
No 79
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.73 E-value=8.5e-06 Score=64.95 Aligned_cols=44 Identities=32% Similarity=0.937 Sum_probs=34.4
Q ss_pred cccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCC
Q 004423 177 VCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 230 (754)
Q Consensus 177 VC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~ 230 (754)
+|++.+ ++..||+|+.|..|||..|+++..+. + ...|+|+.|+.
T Consensus 8 ~C~~~~---~~~~MI~Cd~C~~W~H~~Cvgi~~~~-----~--~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPF---AGRPMIECNECHTWIHLSCAKIRKSN-----V--PEVFVCQKCRD 51 (52)
T ss_dssp TTCCBC---TTCCEEECTTTCCEEETTTTTCCGGG-----C--CSSCCCHHHHT
T ss_pred EeCCcC---CCCCEEEcCCCCccccccccCCCccc-----C--CCcEECcCCCC
Confidence 477653 35789999999999999999987642 1 24899999964
No 80
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=97.72 E-value=2.4e-05 Score=70.03 Aligned_cols=46 Identities=22% Similarity=0.604 Sum_probs=35.3
Q ss_pred cccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
..| +|+...++ ..||.|+.|.++||..|++++.... + ..|+|+.|+
T Consensus 29 vrC-iC~~~~~~-----~~mi~Cd~C~~w~H~~C~~~~~~~~---p-~~w~C~~C~ 74 (98)
T 2lv9_A 29 TRC-ICGFTHDD-----GYMICCDKCSVWQHIDCMGIDRQHI---P-DTYLCERCQ 74 (98)
T ss_dssp CCC-TTSCCSCS-----SCEEEBTTTCBEEETTTTTCCTTSC---C-SSBCCTTTS
T ss_pred EEe-ECCCccCC-----CcEEEcCCCCCcCcCcCCCCCccCC---C-CCEECCCCc
Confidence 357 78775532 3899999999999999999975433 2 479999994
No 81
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.72 E-value=1.2e-05 Score=68.05 Aligned_cols=47 Identities=19% Similarity=0.496 Sum_probs=36.3
Q ss_pred ccccccccCCCC-CceeCCCCCCccccccCCCCCccCCCCCcccCCCcc
Q 004423 91 ICEICRRTGDPN-KFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~sgd~~-kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~ 138 (754)
+| +|+.+.+.. .||.|+.|..|||..|++..........|+|+.|..
T Consensus 18 ~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 18 DC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp CC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred Ee-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 45 688775443 699999999999999999764433457899999853
No 82
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.70 E-value=5.6e-06 Score=69.41 Aligned_cols=51 Identities=27% Similarity=0.596 Sum_probs=34.8
Q ss_pred cCccccccccCCCCCCceecc--CcCCeecccCCCCChHHHhhhccCCCCceeCCCCCC
Q 004423 174 YCPVCLKVYRDSESTPMVCCD--VCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 230 (754)
Q Consensus 174 yCpVC~K~Y~Dsdgg~MLqCD--sC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~ 230 (754)
+| +|+.. .+.+.||+|+ .|..|||..|+++..+...... ....|+|+.|+.
T Consensus 12 ~C-~C~~~---~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~--~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 12 RC-ICSST---MVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAE--VPPVFYCELCRL 64 (68)
T ss_dssp CC-TTCCC---SCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCC--CCSSCCCHHHHH
T ss_pred Ee-ECCCC---cCCCCEEEECCCCCCCeEchhhCCCCcccccccC--CCCcEECcCccC
Confidence 45 57653 2356899999 4999999999998654321111 124799999973
No 83
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.68 E-value=9.3e-06 Score=72.23 Aligned_cols=46 Identities=33% Similarity=0.838 Sum_probs=35.3
Q ss_pred CCccCccccccccCCCCCCceeccCcC---CeecccCCCCChHHHhhhccCCCCceeCCC-CC
Q 004423 171 KGNYCPVCLKVYRDSESTPMVCCDVCQ---RWVHCQCDGISDEKYLQFQVDGNLQYRCPT-CR 229 (754)
Q Consensus 171 KgnyCpVC~K~Y~Dsdgg~MLqCDsC~---~wFH~eCd~LsdE~ye~~~~d~d~~Y~Cpt-Cr 229 (754)
...|| +|.+.+ .+.||+||.|. .|||..|++|... +.+.|+|+. |+
T Consensus 25 ~~~yC-iC~~~~----~g~MI~CD~c~C~~eWfH~~CVgl~~~--------p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 25 EEVYC-FCRNVS----YGPMVACDNPACPFEWFHYGCVGLKQA--------PKGKWYCSKDCK 74 (90)
T ss_dssp CSCCS-TTTCCC----SSSEECCCSSSCSCSCEETTTSSCSSC--------TTSCCCSSHHHH
T ss_pred CCcEE-EeCCCC----CCCEEEecCCCCccccCcCccCCCCcC--------CCCCccCChhhc
Confidence 34578 798753 24699999966 8999999997642 236899999 96
No 84
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.66 E-value=2.9e-06 Score=79.99 Aligned_cols=44 Identities=18% Similarity=0.508 Sum_probs=37.7
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCc-----cC--CCCCcccCCCc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHK-----NV--SSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~-----~v--p~g~W~CP~C~ 137 (754)
+|.+|+.+| .++.|+.|+++||..|+.|++. .+ +.+.|.|+.|.
T Consensus 59 ~C~vC~dGG---~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 59 QCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp SCTTTCCCS---EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred cCeecCCCC---eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 788889888 8999999999999999997642 33 78999999985
No 85
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.53 E-value=1.9e-05 Score=63.02 Aligned_cols=46 Identities=20% Similarity=0.514 Sum_probs=35.2
Q ss_pred cccccccCC-CCCceeCC-CCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 92 CEICRRTGD-PNKFMFCR-RCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 92 C~vC~~sgd-~~kLL~Cd-~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
|.+|+++.+ ...||.|+ .|..|||..|++..........|+|+.|.
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 448888765 34699999 89999999999965433334789999873
No 86
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.51 E-value=2.1e-05 Score=74.21 Aligned_cols=53 Identities=19% Similarity=0.599 Sum_probs=41.0
Q ss_pred CCccccccccccccccCCccCCCceEEeCcCCCccchhccCCCccc---ccc-CCCCCccCCCCC
Q 004423 30 QSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQN---RDL-FHWSSWKCPSCR 90 (754)
Q Consensus 30 ~s~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~---~~~-v~~~~W~Cp~Ck 90 (754)
.+..+.+|.+|..+| +|++|+.|++.||..|+.+...+ ... .+.+.|.|..|.
T Consensus 53 ~Dg~~~~C~vC~dGG--------~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 53 SDGMDEQCRWCAEGG--------NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp TTSCBSSCTTTCCCS--------EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCCCCcCeecCCCC--------eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 345667999999987 99999999999999999975321 011 145899999984
No 87
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.50 E-value=1.9e-05 Score=66.92 Aligned_cols=41 Identities=24% Similarity=0.579 Sum_probs=32.9
Q ss_pred cccccCCCCCceeCCCCC---CccccccCCCCCccCCCCCcccCCCc
Q 004423 94 ICRRTGDPNKFMFCRRCD---AAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 94 vC~~sgd~~kLL~Cd~C~---raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
+|++... ..||.|+.|+ .|||..|+.. ...|.+.|+||.|.
T Consensus 10 ~C~~~~~-g~MI~CD~cdC~~~WfH~~Cvgl--~~~p~~~w~Cp~C~ 53 (70)
T 1x4i_A 10 ICNQVSY-GEMVGCDNQDCPIEWFHYGCVGL--TEAPKGKWYCPQCT 53 (70)
T ss_dssp TTSCCCC-SSEECCSCTTCSCCCEEHHHHTC--SSCCSSCCCCHHHH
T ss_pred EcCCCCC-CCEeEeCCCCCCccCCccccccc--CcCCCCCEECCCCC
Confidence 4676543 3899999975 8999999994 45678999999985
No 88
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.47 E-value=2.2e-05 Score=67.52 Aligned_cols=47 Identities=23% Similarity=0.580 Sum_probs=36.4
Q ss_pred ccccccccCC-CCCceeCCCCCCccccccCCCCCccC-CCCCcccCCCcc
Q 004423 91 ICEICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKNV-SSGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~sgd-~~kLL~Cd~C~raYH~~CL~Ppl~~v-p~g~W~CP~C~~ 138 (754)
+| +|+.+.+ ...||.|+.|..|||..|++...... ....|+|+.|..
T Consensus 14 ~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 62 (79)
T 1wep_A 14 YC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEA 62 (79)
T ss_dssp CS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTT
T ss_pred EE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccc
Confidence 45 7888764 45799999999999999999654332 246899999863
No 89
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.43 E-value=5.7e-05 Score=60.13 Aligned_cols=43 Identities=21% Similarity=0.492 Sum_probs=35.9
Q ss_pred cccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 94 ICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 94 vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
+|+.+.+...||.|+.|..|||..|++.....++ ..|+||.|.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~ 50 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCR 50 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHH
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCC
Confidence 7888777668999999999999999997655444 689999875
No 90
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.39 E-value=3.7e-05 Score=66.05 Aligned_cols=47 Identities=21% Similarity=0.528 Sum_probs=36.3
Q ss_pred ccccccccCCCCCceeCC--CCCCccccccCCCCCcc-----CCCCCcccCCCcc
Q 004423 91 ICEICRRTGDPNKFMFCR--RCDAAYHCYCQHPPHKN-----VSSGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd--~C~raYH~~CL~Ppl~~-----vp~g~W~CP~C~~ 138 (754)
+| +|+...+...||.|+ .|..|||..|++..... .....|+|+.|..
T Consensus 18 ~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 18 RC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred Ee-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 45 788875566899999 99999999999964432 1246899999863
No 91
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.37 E-value=5.2e-05 Score=62.32 Aligned_cols=44 Identities=27% Similarity=0.791 Sum_probs=34.1
Q ss_pred cccccccccccCCccCCCceEEeCc--CC-CccchhccCCCccccccCCCCCccCCCCC
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKS--CG-KKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~--C~-rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
.+| +|+.... ..||.|+. |. .+||..|+++... +.+.|+|+.|.
T Consensus 11 ~~C-~C~~~~~------g~mi~CD~cdC~~~wfH~~Cvgl~~~-----p~g~w~C~~C~ 57 (60)
T 2vnf_A 11 TYC-LCHQVSY------GEMIGCDNPDCSIEWFHFACVGLTTK-----PRGKWFCPRCS 57 (60)
T ss_dssp EET-TTTEECC------SEEEECSCTTCSSCEEETGGGTCSSC-----CSSCCCCHHHH
T ss_pred CEE-ECCCcCC------CCEEEeCCCCCCCceEehhcCCCCcC-----CCCCEECcCcc
Confidence 588 8988532 28999999 66 8999999997543 34789999883
No 92
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.35 E-value=2.7e-05 Score=66.36 Aligned_cols=45 Identities=24% Similarity=0.547 Sum_probs=35.4
Q ss_pred cccccCC-CCCceeCCCCCCccccccCCCCCccCC-CCCcccCCCcc
Q 004423 94 ICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKNVS-SGPYLCPKHTK 138 (754)
Q Consensus 94 vC~~sgd-~~kLL~Cd~C~raYH~~CL~Ppl~~vp-~g~W~CP~C~~ 138 (754)
+|+.+.+ ...||.|+.|..|||..|++......+ ...|+|+.|..
T Consensus 14 iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 14 VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 7888754 457999999999999999996544433 36799999864
No 93
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.35 E-value=6.7e-05 Score=62.87 Aligned_cols=44 Identities=25% Similarity=0.471 Sum_probs=33.5
Q ss_pred cccccCCCCCceeCC--CCCCccccccCCCCCccC----CCCCcccCCCc
Q 004423 94 ICRRTGDPNKFMFCR--RCDAAYHCYCQHPPHKNV----SSGPYLCPKHT 137 (754)
Q Consensus 94 vC~~sgd~~kLL~Cd--~C~raYH~~CL~Ppl~~v----p~g~W~CP~C~ 137 (754)
+|+...+...||.|+ .|..|||..|++...... ....|+|+.|.
T Consensus 14 ~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 14 ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR 63 (68)
T ss_dssp TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCcc
Confidence 688776667899999 599999999998543221 12479999985
No 94
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.31 E-value=2.3e-05 Score=75.67 Aligned_cols=47 Identities=28% Similarity=0.682 Sum_probs=36.1
Q ss_pred ccccccccCC-CCCceeCCCCCCccccccCCCCCcc-CCCCCcccCCCcc
Q 004423 91 ICEICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKN-VSSGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~sgd-~~kLL~Cd~C~raYH~~CL~Ppl~~-vp~g~W~CP~C~~ 138 (754)
+| +|+.+++ ...|+.|+.|..|||..|++..... ...+.|+||.|..
T Consensus 10 ~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 10 YC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred Ee-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 45 7777654 3469999999999999999864332 3467899999863
No 95
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.29 E-value=4.7e-05 Score=69.08 Aligned_cols=48 Identities=21% Similarity=0.497 Sum_probs=36.4
Q ss_pred ccccccccCC-CCCceeCC-CCCCccccccCCCCCcc------CCCCCcccCCCcc
Q 004423 91 ICEICRRTGD-PNKFMFCR-RCDAAYHCYCQHPPHKN------VSSGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~sgd-~~kLL~Cd-~C~raYH~~CL~Ppl~~------vp~g~W~CP~C~~ 138 (754)
.|.+|+++.+ ...||.|+ .|..|||..|++..... .+...|+||.|..
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred CCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 5667787742 34799998 99999999999965321 3568899999864
No 96
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.29 E-value=1.9e-05 Score=66.18 Aligned_cols=47 Identities=19% Similarity=0.499 Sum_probs=36.0
Q ss_pred ccccccccCC-CCCceeCC-CCCCccccccCCCCCcc------CCCCCcccCCCc
Q 004423 91 ICEICRRTGD-PNKFMFCR-RCDAAYHCYCQHPPHKN------VSSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd-~~kLL~Cd-~C~raYH~~CL~Ppl~~------vp~g~W~CP~C~ 137 (754)
.|.+|+++.+ ...||.|+ .|..|||..|++..... .+...|+|+.|.
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 4567787754 44799999 99999999999964321 366789999874
No 97
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.28 E-value=2.9e-05 Score=65.83 Aligned_cols=45 Identities=33% Similarity=0.846 Sum_probs=34.4
Q ss_pred ccCccccccccCCCCCCceeccCcC---CeecccCCCCChHHHhhhccCCCCceeCCCCCC
Q 004423 173 NYCPVCLKVYRDSESTPMVCCDVCQ---RWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 230 (754)
Q Consensus 173 nyCpVC~K~Y~Dsdgg~MLqCDsC~---~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~ 230 (754)
.||. |.+.+ .+.||+||.|. .|||..|++|... +...|+|+.|..
T Consensus 7 ~yC~-C~~~~----~g~MI~CD~cdC~~~WfH~~Cvgl~~~--------p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 7 GYCI-CNQVS----YGEMVGCDNQDCPIEWFHYGCVGLTEA--------PKGKWYCPQCTA 54 (70)
T ss_dssp CCST-TSCCC----CSSEECCSCTTCSCCCEEHHHHTCSSC--------CSSCCCCHHHHH
T ss_pred eEEE-cCCCC----CCCEeEeCCCCCCccCCcccccccCcC--------CCCCEECCCCCc
Confidence 4675 87652 34899999974 8999999997642 346899999973
No 98
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=97.26 E-value=3.3e-05 Score=86.51 Aligned_cols=51 Identities=33% Similarity=0.908 Sum_probs=39.0
Q ss_pred CccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCC
Q 004423 172 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 230 (754)
Q Consensus 172 gnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~ 230 (754)
..|| +|++.|. .++.||+|+.|..|||..|+++..+....+ ..|+|+.|+.
T Consensus 37 ~~yC-~C~~~~d--~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~-----~~~~C~~C~~ 87 (488)
T 3kv5_D 37 PVYC-VCRQPYD--VNRFMIECDICKDWFHGSCVGVEEHHAVDI-----DLYHCPNCAV 87 (488)
T ss_dssp CEET-TTTEECC--TTSCEEEBTTTCCEEEHHHHTCCGGGGGGE-----EEBCCHHHHH
T ss_pred CeEE-eCCCcCC--CCCCeEEccCCCCceeeeecCcCcccccCC-----CEEECCCCcC
Confidence 3467 7888763 356899999999999999999876543221 3799999984
No 99
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.25 E-value=5.2e-05 Score=64.51 Aligned_cols=50 Identities=26% Similarity=0.721 Sum_probs=36.6
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccC--CCCCccCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLF--HWSSWKCPSC 89 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v--~~~~W~Cp~C 89 (754)
..+| +|+.... .+.||.|+.|..+||..|+++.......+ ....|+|+.|
T Consensus 16 ~~~C-~C~~~~~-----~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C 67 (76)
T 1wem_A 16 ALYC-ICRQPHN-----NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNC 67 (76)
T ss_dssp CCCS-TTCCCCC-----SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHH
T ss_pred CCEE-ECCCccC-----CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCC
Confidence 3588 8988653 23899999999999999999875432110 1367998887
No 100
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.20 E-value=0.00015 Score=63.88 Aligned_cols=55 Identities=24% Similarity=0.661 Sum_probs=40.6
Q ss_pred CCCccccccccccccccCCccCCCceEEeCcCCCccchhccCCCc--------ccc-ccCCCCCccCCCC
Q 004423 29 GQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWA--------QNR-DLFHWSSWKCPSC 89 (754)
Q Consensus 29 ~~s~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~--------e~~-~~v~~~~W~Cp~C 89 (754)
+...++++|.||..-. .++|+.|..|++.||..||.... +.. .......|.|+.|
T Consensus 10 e~~~~D~~C~VC~~~t------~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~C 73 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWT------AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC 73 (89)
T ss_dssp CCCCCSCCCTTTCCCC------SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTT
T ss_pred cCCCCCcccCcccccc------ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCcccccc
Confidence 3445778999999755 34999999999999999997631 111 1124579999998
No 101
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=97.20 E-value=4.3e-05 Score=84.84 Aligned_cols=50 Identities=38% Similarity=0.900 Sum_probs=38.7
Q ss_pred cCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 174 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 174 yCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
|| +|.+.|. +++.||+||.|..|||..|+++..+.... ...|+|+.|+..
T Consensus 7 yC-iC~~~~d--~~~~MIqCD~C~~WfH~~CVgi~~~~~~~-----~~~y~C~~C~~~ 56 (447)
T 3kv4_A 7 YC-LCRLPYD--VTRFMIECDMCQDWFHGSCVGVEEEKAAD-----IDLYHCPNCEVL 56 (447)
T ss_dssp ET-TTTEECC--TTSCEEECTTTCCEEEHHHHTCCHHHHTT-----EEECCCHHHHHH
T ss_pred EE-eCCCcCC--CCCCeEEcCCCCcccccccCCcCcccccC-----CCEEECCCCccc
Confidence 45 6888763 35789999999999999999988664322 147999999854
No 102
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.00 E-value=0.00023 Score=64.33 Aligned_cols=42 Identities=36% Similarity=0.912 Sum_probs=34.3
Q ss_pred CceeccCcCCeecccCCCCChHHHhhhcc-CCCCceeCCCCCC
Q 004423 189 PMVCCDVCQRWVHCQCDGISDEKYLQFQV-DGNLQYRCPTCRG 230 (754)
Q Consensus 189 ~MLqCDsC~~wFH~eCd~LsdE~ye~~~~-d~d~~Y~CptCr~ 230 (754)
.||+|+.|..|||..|.++.++.+..+.. +....|.|+.|..
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 48999999999999999988776666544 4456899999974
No 103
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.98 E-value=0.00033 Score=60.13 Aligned_cols=51 Identities=25% Similarity=0.432 Sum_probs=36.9
Q ss_pred ccccccccccccCCccCCCceEEeC--cCCCccchhccCCCcccccc--CCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQNRDL--FHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd--~C~rsYH~~CL~p~~e~~~~--v~~~~W~Cp~Ck 90 (754)
..+| +|+..... ..||.|+ .|..+||..|+++...+... .....|+|+.|+
T Consensus 16 ~~~C-iC~~~~~~-----g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~ 70 (78)
T 1wew_A 16 KVRC-VCGNSLET-----DSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICR 70 (78)
T ss_dssp CCCC-SSCCCCCC-----SCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHH
T ss_pred CEEe-ECCCcCCC-----CCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCC
Confidence 3588 79886322 3899999 99999999999987553210 123689988873
No 104
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.81 E-value=0.00022 Score=70.66 Aligned_cols=48 Identities=29% Similarity=0.679 Sum_probs=34.2
Q ss_pred ccccccccCCCC----CceeCCCCCCccccccCCCCCcc------CC-CCCcccCCCcc
Q 004423 91 ICEICRRTGDPN----KFMFCRRCDAAYHCYCQHPPHKN------VS-SGPYLCPKHTK 138 (754)
Q Consensus 91 ~C~vC~~sgd~~----kLL~Cd~C~raYH~~CL~Ppl~~------vp-~g~W~CP~C~~ 138 (754)
+|.+|+++.+++ .||.|+.|..|||..|++..... .| ...|+||.|..
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~ 62 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 62 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCC
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCC
Confidence 466666654443 49999999999999999864321 12 24799999863
No 105
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=96.56 E-value=0.00079 Score=75.96 Aligned_cols=42 Identities=29% Similarity=0.827 Sum_probs=33.8
Q ss_pred CCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 185 SESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 185 sdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
+.+..||+||.|..|||..|+++..+....+ ..|+||.|...
T Consensus 53 n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~-----~~y~Cp~C~~~ 94 (528)
T 3pur_A 53 KNDFQWIGCDSCQTWYHFLCSGLEQFEYYLY-----EKFFCPKCVPH 94 (528)
T ss_dssp TSTTSEEECTTTCCEEEGGGTTCCGGGTTTE-----EECCCTTTHHH
T ss_pred CcCCCEEECCCCCcCCCCcCCCCChhHhcCC-----CeEECcCCcCC
Confidence 4466899999999999999999987643322 47999999863
No 106
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.23 E-value=0.0084 Score=51.47 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=47.6
Q ss_pred ccccceEEEEecCCCceeeeeeEEeec-CeeEEEEEecCCcccceecCceeeEeeecccccc
Q 004423 692 DAIGKRVEVHQQSDNSWHKGVVTDTVE-GTSTLSITLDDSRVKTLELGKQGVRFVPQKQKRS 752 (754)
Q Consensus 692 da~~krvev~~~sd~~w~~g~v~~~~~-~~~~~~v~~d~g~~~~~~~gk~~vr~~~~~~k~~ 752 (754)
=.+|-+|.-.++ ||.|+.++|+.|.. |+ ..|.|+|+..++|.+- .||-||..+|+.
T Consensus 10 ~kvGd~clA~ws-Dg~~Y~A~I~~v~~~~~--~~V~f~Dyn~e~v~~~--~lrplp~~~k~~ 66 (74)
T 2equ_A 10 FKAGEEVLARWT-DCRYYPAKIEAINKEGT--FTVQFYDGVIRCLKRM--HIKAMPEDAKGQ 66 (74)
T ss_dssp CCTTCEEEEECS-SSSEEEEEEEEESTTSS--EEEEETTSCEEEECGG--GEECCCGGGTCC
T ss_pred CCCCCEEEEECC-CCCEEEEEEEEECCCCE--EEEEEecCCeEEecHH--HCeeCChhHhhc
Confidence 468999999996 99999999999976 55 9999999988888654 699999877753
No 107
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=96.03 E-value=0.003 Score=62.46 Aligned_cols=46 Identities=17% Similarity=0.498 Sum_probs=33.9
Q ss_pred CCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 185 SESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 185 sdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
..+..||+|..|.+|||..|+....-. .+..+..+.|.|..|..+.
T Consensus 15 ~~~~~mLqC~~C~qWFH~~Cl~~~~~~--~lp~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 15 QLGEVELQCGICTKWFTADTFGIDTSS--CLPFMTNYSFHCNVCHHSG 60 (177)
T ss_dssp CTTSCEEECTTTCCEEEGGGGTCCCTT--CCTTCCSEEEECTTTSTTS
T ss_pred CCCceeEeeccccceecHHHhcccccC--ccccceeEEEEccccCCCC
Confidence 456789999999999999998743211 1222346899999999754
No 108
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=95.97 E-value=0.00064 Score=75.56 Aligned_cols=45 Identities=22% Similarity=0.510 Sum_probs=35.1
Q ss_pred cccccCC-CCCceeCCCCCCccccccCCCCCccCC-CCCcccCCCcc
Q 004423 94 ICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKNVS-SGPYLCPKHTK 138 (754)
Q Consensus 94 vC~~sgd-~~kLL~Cd~C~raYH~~CL~Ppl~~vp-~g~W~CP~C~~ 138 (754)
+|+.+.+ ...|+.|+.|..|||..|++....... ...|+||.|..
T Consensus 9 iC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~ 55 (447)
T 3kv4_A 9 LCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEV 55 (447)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHH
T ss_pred eCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcc
Confidence 8888754 457999999999999999996443332 36899999853
No 109
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.79 E-value=0.0018 Score=57.06 Aligned_cols=46 Identities=17% Similarity=0.483 Sum_probs=34.0
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCC------------CccCCCCCcccCCCc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPP------------HKNVSSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Pp------------l~~vp~g~W~CP~C~ 137 (754)
+|.+|..-.. +.++.|..|++.||..|+.+. +...+...|.|+.|-
T Consensus 17 ~C~VC~~~t~-~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 17 MCDVCEVWTA-ESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCTTTCCCCS-SCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred ccCccccccc-cceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 6777775442 378999999999999999752 112356789999974
No 110
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=95.74 E-value=0.014 Score=51.60 Aligned_cols=58 Identities=21% Similarity=0.164 Sum_probs=45.0
Q ss_pred HhccccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccceecCceeeEeeeccc
Q 004423 688 KLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQKQ 749 (754)
Q Consensus 688 ~lg~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~~~gk~~vr~~~~~~ 749 (754)
....-.+|.+|.-.| +|+.|+.++|+.|.+- .+..|.|+||..+||..- .||-+|..|
T Consensus 18 ~~~~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~etvk~~--~IKp~~~~~ 75 (85)
T 3qii_A 18 GSSEFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI--HVKAFSKDQ 75 (85)
T ss_dssp ---CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGG--GEEECC---
T ss_pred CCcccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCeEEecHH--HcccCChhh
Confidence 345678999999999 9999999999999773 249999999999998864 577776655
No 111
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=95.70 E-value=0.0023 Score=71.79 Aligned_cols=50 Identities=24% Similarity=0.589 Sum_probs=36.4
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
..+| +|+...+. ...||.|+.|..+||..|++........ ...|.|+.|.
T Consensus 37 ~~yC-~C~~~~d~----~~~MIqCd~C~~WfH~~Cvgl~~~~~~~--~~~~~C~~C~ 86 (488)
T 3kv5_D 37 PVYC-VCRQPYDV----NRFMIECDICKDWFHGSCVGVEEHHAVD--IDLYHCPNCA 86 (488)
T ss_dssp CEET-TTTEECCT----TSCEEEBTTTCCEEEHHHHTCCGGGGGG--EEEBCCHHHH
T ss_pred CeEE-eCCCcCCC----CCCeEEccCCCCceeeeecCcCcccccC--CCEEECCCCc
Confidence 3567 89875421 2389999999999999999987653221 2579888883
No 112
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=95.62 E-value=0.011 Score=55.13 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=37.3
Q ss_pred ccccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCccccee
Q 004423 690 GKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLE 736 (754)
Q Consensus 690 g~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~~ 736 (754)
|.+-||+||-..|++++.|+-|+|+.+ .|-.++.|.||||..++|-
T Consensus 3 ~~~~~G~rV~AkWsdn~~yYpG~V~~~-~~~~ky~V~FdDg~~~~v~ 48 (123)
T 2g3r_A 3 MNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYECDVL 48 (123)
T ss_dssp --CCTTCEEEEECTTTCCEEEEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred CccccceEEEEEeccCCcCcccEEEEe-ccCCeEEEEEcCCCeeEee
Confidence 678999999999976668999999775 3344699999999999874
No 113
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=95.50 E-value=0.006 Score=68.94 Aligned_cols=37 Identities=24% Similarity=0.500 Sum_probs=29.8
Q ss_pred CceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 52 RRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 52 eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
..||.|+.|..+||..|++....... ....|.||.|.
T Consensus 56 ~~mI~CD~C~~WfH~~CVgi~~~~a~--~~~~y~Cp~C~ 92 (528)
T 3pur_A 56 FQWIGCDSCQTWYHFLCSGLEQFEYY--LYEKFFCPKCV 92 (528)
T ss_dssp TSEEECTTTCCEEEGGGTTCCGGGTT--TEEECCCTTTH
T ss_pred CCEEECCCCCcCCCCcCCCCChhHhc--CCCeEECcCCc
Confidence 37999999999999999999765432 23679999984
No 114
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=94.33 E-value=0.0029 Score=55.42 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=45.9
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccceecCceeeEeeecccc
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQKQK 750 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~~~gk~~vr~~~~~~k 750 (754)
.+|-+|...|+ ||.|+.++|+.|... .+..|.|+||..++|.+- .||-+|++|+
T Consensus 8 kvGd~clAkws-Dg~wY~A~I~~v~~~-~~y~V~F~DGn~E~V~~s--~LrPl~~~~~ 61 (81)
T 2ldm_A 8 QINEQVLASWS-DSRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI--HVKAFSKDQN 61 (81)
Confidence 57889999997 999999999999642 259999999999999875 5888888886
No 115
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=95.02 E-value=0.019 Score=55.55 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=40.8
Q ss_pred ccccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCccccee
Q 004423 690 GKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLE 736 (754)
Q Consensus 690 g~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~~ 736 (754)
|.+-||.||--+|++++-|+.|+|+.+.+++ ++.|.||||..++|.
T Consensus 7 ~~~~iG~rVfArWsd~~yyYpG~V~~~~~~~-~Y~V~FdDG~~k~v~ 52 (156)
T 1ssf_A 7 GNSFVGLRVVAKWSSNGYFYSGKITRDVGAG-KYKLLFDDGYECDVL 52 (156)
T ss_dssp -CCSTTCEEEECSSCSSEEEEEEEEECCTTT-EEEEECTTSCEEEEE
T ss_pred CcchhccEEEEEcCCCCcccccEEEEeccCC-EEEEEEcCCCeeEee
Confidence 7788999999999988899999999986555 699999999999996
No 116
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=95.00 E-value=0.036 Score=46.90 Aligned_cols=54 Identities=22% Similarity=0.186 Sum_probs=43.7
Q ss_pred ccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccceecCceeeEeeeccc
Q 004423 692 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQKQ 749 (754)
Q Consensus 692 da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~~~gk~~vr~~~~~~ 749 (754)
=.+|.+|...| +|+.|+.++|+.|.+- .+..|.|+||..+||.+- .||-+|.-|
T Consensus 7 ~~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~etvk~~--~ikp~~~~~ 60 (67)
T 3p8d_A 7 FQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI--HVKAFSKDQ 60 (67)
T ss_dssp CCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGG--GEEECC---
T ss_pred cccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCceEEEeHH--HcccCCccc
Confidence 36899999999 9999999999999774 349999999999999864 467666544
No 117
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=94.87 E-value=0.00098 Score=59.80 Aligned_cols=92 Identities=26% Similarity=0.673 Sum_probs=58.6
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC------------------ccccc
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR------------------ICEIC 95 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck------------------~C~vC 95 (754)
+..|.||...-.... .....+.-..|+..||..|+..|... ...||.|+ .|.+|
T Consensus 7 ~~~C~IC~~~~~~~~-~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC 78 (133)
T 4ap4_A 7 TVSCPICMDGYSEIV-QNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCPTCRKKINHKRYHPIYIGSGTVSCPIC 78 (133)
T ss_dssp SCBCTTTCCBHHHHH-HTTCCEEEETTCCEEEHHHHHHHHTT-------CSBCTTTCCBCTTTCEEECBCSSSSCBCTTT
T ss_pred CCCCcccChhhhCcc-ccccCeEecCCCChhhHHHHHHHHHh-------CCCCCCCCCcCccccccccccCCCCCCCCCC
Confidence 358999987542100 01144456699999999999887542 23788887 67777
Q ss_pred cccCC----CCCceeCCCCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 96 RRTGD----PNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 96 ~~sgd----~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
...-. .........|+..||..|+..-+.. ...||.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr 120 (133)
T 4ap4_A 79 MDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCR 120 (133)
T ss_dssp CCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----CSBCTTTC
T ss_pred CCccccccccCcceEeCCCCChhhHHHHHHHHHc----CCCCCCCC
Confidence 65321 1133455678889999998753322 24677765
No 118
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=93.93 E-value=0.029 Score=55.52 Aligned_cols=32 Identities=6% Similarity=-0.064 Sum_probs=23.6
Q ss_pred ccccccccCCCC-CceeCCCCCCccccccCCCCC
Q 004423 91 ICEICRRTGDPN-KFMFCRRCDAAYHCYCQHPPH 123 (754)
Q Consensus 91 ~C~vC~~sgd~~-kLL~Cd~C~raYH~~CL~Ppl 123 (754)
+| .|+.+++.+ .||+|.+|.+|||..|+..+.
T Consensus 7 yC-YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~ 39 (177)
T 3rsn_A 7 SV-DEENGRQLGEVELQCGICTKWFTADTFGIDT 39 (177)
T ss_dssp -----CTTCCTTSCEEECTTTCCEEEGGGGTCCC
T ss_pred EE-EcCCCCCCCceeEeeccccceecHHHhcccc
Confidence 44 788877655 699999999999999998543
No 119
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=92.97 E-value=0.024 Score=51.00 Aligned_cols=35 Identities=31% Similarity=0.647 Sum_probs=27.3
Q ss_pred CceeCCCCCCccccccCCCCC------ccCC-CCCcccCCCc
Q 004423 103 KFMFCRRCDAAYHCYCQHPPH------KNVS-SGPYLCPKHT 137 (754)
Q Consensus 103 kLL~Cd~C~raYH~~CL~Ppl------~~vp-~g~W~CP~C~ 137 (754)
.||.|+.|..|||..|+.... ..+| ...|.||.|.
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~ 42 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCT 42 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCT
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccc
Confidence 389999999999999998542 2334 4479999985
No 120
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=92.97 E-value=0.14 Score=48.32 Aligned_cols=52 Identities=27% Similarity=0.416 Sum_probs=41.3
Q ss_pred cceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccceecCceeeEeeeccc
Q 004423 695 GKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQKQ 749 (754)
Q Consensus 695 ~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~~~gk~~vr~~~~~~ 749 (754)
+-.|||.. +.|.|++|+|.+|.... +.|.|+|.-+..-.+.=+-|||.|...
T Consensus 5 ~~~VEV~~-~~G~~y~a~V~~v~~d~--~~V~f~n~w~~~~~vp~~~vRlpP~~~ 56 (128)
T 3h8z_A 5 GLPVEVRG-SNGAFYKGFVKDVHEDS--VTIFFENNWQSERQIPFGDVRLPPPAD 56 (128)
T ss_dssp TCEEEEEC-TTSCEEEEEEEEECSSE--EEEEETTCTTCCEEEEGGGEECCCCC-
T ss_pred ccEEEEec-CCCCEEEEEEEEEeCCc--EEEEEccccCcceEechhhEEcCCCcc
Confidence 34699999 77999999999997777 999999865434456667899988653
No 121
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=92.82 E-value=0.0095 Score=53.33 Aligned_cols=96 Identities=20% Similarity=0.496 Sum_probs=54.5
Q ss_pred ceeCCCCCCccccccCCCCCccCCCCCcccCCCcccCCCCCCCCCCCCccccccCccccCCCcccccCCccCcccccccc
Q 004423 104 FMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYR 183 (754)
Q Consensus 104 LL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~~lf~KgnyCpVC~K~Y~ 183 (754)
.+.--.|+..||..|+..-+. ....||.|.. ..........+ .......|++|...+.
T Consensus 26 ~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~------~~~~~~l~~l~------------i~~~~~~C~iC~~~~~ 83 (133)
T 4ap4_A 26 LIVSTECGHVFCSQCLRDSLK----NANTCPTCRK------KINHKRYHPIY------------IGSGTVSCPICMDGYS 83 (133)
T ss_dssp CEEEETTCCEEEHHHHHHHHT----TCSBCTTTCC------BCTTTCEEECB------------CSSSSCBCTTTCCBHH
T ss_pred CeEecCCCChhhHHHHHHHHH----hCCCCCCCCC------cCccccccccc------------cCCCCCCCCCCCCccc
Confidence 334558999999999874332 1236777653 11111000000 1123345889987764
Q ss_pred CC-CCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 184 DS-ESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 184 Ds-dgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
+. +....+....|.+.||..|.. + +.. ....||.|+..
T Consensus 84 ~~~~~~~~~~~~~CgH~fc~~Ci~---~-~~~------~~~~CP~Cr~~ 122 (133)
T 4ap4_A 84 EIVQNGRLIVSTECGHVFCSQCLR---D-SLK------NANTCPTCRKK 122 (133)
T ss_dssp HHHHTTCCEEEETTSBEEEHHHHH---H-HHH------HCSBCTTTCCB
T ss_pred cccccCcceEeCCCCChhhHHHHH---H-HHH------cCCCCCCCCCc
Confidence 32 122334566799999999943 2 211 14699999975
No 122
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=92.29 E-value=0.046 Score=44.19 Aligned_cols=36 Identities=22% Similarity=0.608 Sum_probs=26.1
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
+..|.||...-..+ ..+....|+..||..|+..|..
T Consensus 14 ~~~C~IC~~~~~~~-----~~~~~~~C~H~fc~~Ci~~~~~ 49 (69)
T 2kiz_A 14 EEKCTICLSILEEG-----EDVRRLPCMHLFHQVCVDQWLI 49 (69)
T ss_dssp CCSBTTTTBCCCSS-----SCEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCeeCCccccCC-----CcEEEeCCCCHHHHHHHHHHHH
Confidence 45899998753211 3355567999999999988764
No 123
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.08 E-value=0.045 Score=45.18 Aligned_cols=37 Identities=22% Similarity=0.813 Sum_probs=27.3
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
.+..|.||...-.. .+.+....|+..||..|+..|..
T Consensus 22 ~~~~C~IC~~~~~~-----~~~~~~l~C~H~fh~~Ci~~w~~ 58 (75)
T 1x4j_A 22 EQTLCVVCMCDFES-----RQLLRVLPCNHEFHAKCVDKWLK 58 (75)
T ss_dssp SCCEETTTTEECCB-----TCEEEEETTTEEEETTHHHHHHH
T ss_pred CCCCCeECCcccCC-----CCeEEEECCCCHhHHHHHHHHHH
Confidence 34689999975422 14555567999999999998764
No 124
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=90.54 E-value=0.027 Score=61.56 Aligned_cols=92 Identities=15% Similarity=0.291 Sum_probs=58.5
Q ss_pred ccccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCCccccccccCCCCCceeCC--C
Q 004423 32 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCR--R 109 (754)
Q Consensus 32 ~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck~C~vC~~sgd~~kLL~Cd--~ 109 (754)
..+..|..|+....-..-..=..+.|..|...|+..-..... ..+ ..+|.+|..++ .++.|+ .
T Consensus 48 ~~e~~C~~CG~~~~~~~HPl~~v~lC~~Ck~~y~~~~f~~D~--------DG~----~~yCr~C~~Gg---~l~~Cdn~~ 112 (386)
T 2pv0_B 48 NIEDICICCGSLQVHTQHPLFEGGICAPCKDKFLDALFLYDD--------DGY----QSYCSICCSGE---TLLICGNPD 112 (386)
T ss_dssp CGGGSBTTTCCSCCCSBCSSBSSBCCHHHHHHHHTTTTCBCS--------SSS----BCSCTTTCCCS---SCEECCSTT
T ss_pred cccceeCCCCCcCccccCCCcCcchhhHHHHHHhccCcccCC--------CCC----cccceEcCCCC---eEEEeCCCC
Confidence 355689999875321111122456777777777643333211 122 13888888877 799999 9
Q ss_pred CCCccccccCCCCCcc------CCCCCcccCCCcc
Q 004423 110 CDAAYHCYCQHPPHKN------VSSGPYLCPKHTK 138 (754)
Q Consensus 110 C~raYH~~CL~Ppl~~------vp~g~W~CP~C~~ 138 (754)
|.+.|=..|+...+.. .....|.|-.|..
T Consensus 113 C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 113 CTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp CCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 9999999998743311 2357899987753
No 125
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=90.02 E-value=0.04 Score=53.63 Aligned_cols=90 Identities=13% Similarity=0.261 Sum_probs=59.7
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCCccccccccCCCCCceeCC--CC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCR--RC 110 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck~C~vC~~sgd~~kLL~Cd--~C 110 (754)
-+..|..|+.......-..=..+.|..|-..|+..-......- . ..+|.+|..++ .++.|+ .|
T Consensus 35 ~e~~Ct~CG~~~~~~~HPlf~v~lC~~Ck~~y~e~~f~~DeDG--------~----~~yC~wC~~Gg---~l~~Cdn~~C 99 (159)
T 3a1b_A 35 IEDICISCGSLNVTLEHPLFVGGMCQNCKNCFLECAYQYDDDG--------Y----QSYCTICCGGR---EVLMCGNNNC 99 (159)
T ss_dssp GGGSBTTTCCSCCCEECSSBSSEECHHHHHHHHHHTTCBCTTS--------S----BSSCTTTSCCS---EEEECSSTTT
T ss_pred ccCcccCCCCcCccccCCCccchhhHHHHHHHhhcccccCCCC--------C----cceeeEecCCC---eEEeeCCCCC
Confidence 4678999987432111122255678888888876555442211 1 13788888777 899999 89
Q ss_pred CCccccccCCCCCcc------CCCCCcccCCCc
Q 004423 111 DAAYHCYCQHPPHKN------VSSGPYLCPKHT 137 (754)
Q Consensus 111 ~raYH~~CL~Ppl~~------vp~g~W~CP~C~ 137 (754)
.+.|=..|+...+.. .....|.|-.|.
T Consensus 100 ~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 100 CRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp CCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 999999998743221 457899998775
No 126
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=89.99 E-value=0.15 Score=39.28 Aligned_cols=45 Identities=29% Similarity=0.817 Sum_probs=30.5
Q ss_pred cccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
..|.+|...-..+ +..+....|+..||..|+..|... ...||.|+
T Consensus 6 ~~C~IC~~~~~~~----~~~~~~~~C~H~f~~~Ci~~w~~~-------~~~CP~Cr 50 (55)
T 1iym_A 6 VECAVCLAELEDG----EEARFLPRCGHGFHAECVDMWLGS-------HSTCPLCR 50 (55)
T ss_dssp CCCTTTCCCCCTT----SCCEECSSSCCEECTTHHHHTTTT-------CCSCSSSC
T ss_pred CcCccCCccccCC----CceEECCCCCCcccHHHHHHHHHc-------CCcCcCCC
Confidence 5899998864321 234454579999999999887642 23566664
No 127
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=89.87 E-value=0.17 Score=41.70 Aligned_cols=36 Identities=19% Similarity=0.601 Sum_probs=25.1
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
+..|.||...-... ..+.-..|+..||..|+..|..
T Consensus 15 ~~~C~IC~~~~~~~-----~~~~~~~C~H~fc~~Ci~~~~~ 50 (78)
T 2ect_A 15 GLECPVCKEDYALG-----ESVRQLPCNHLFHDSCIVPWLE 50 (78)
T ss_dssp SCCCTTTTSCCCTT-----SCEEECTTSCEEETTTTHHHHT
T ss_pred CCCCeeCCccccCC-----CCEEEeCCCCeecHHHHHHHHH
Confidence 45899998754211 2333346999999999987753
No 128
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=89.50 E-value=0.6 Score=37.70 Aligned_cols=52 Identities=8% Similarity=0.030 Sum_probs=41.6
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecCceeeEeee
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELGKQGVRFVP 746 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-g~~~~~~~gk~~vr~~~ 746 (754)
.+|-.+-..++.||.|+.++|..|.....+..|.|.| |..+++.+. .+|-+|
T Consensus 5 ~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~--~Lr~~~ 57 (59)
T 1mhn_A 5 KVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLS--DLLSPI 57 (59)
T ss_dssp CTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG--GCBCTT
T ss_pred CcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHH--HeeCCC
Confidence 5788888888789999999999998633459999988 988888765 355554
No 129
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.44 E-value=0.12 Score=44.44 Aligned_cols=47 Identities=21% Similarity=0.735 Sum_probs=29.2
Q ss_pred cccccccccccCCccCCCceEE-e--CcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 35 VMCRLCFVGENEGCERARRMLS-C--KSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~-C--d~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
..|.||......+ +.|+. | .+..+.||..||..|.... ....||-|+
T Consensus 16 ~~C~IC~~~~~~~----~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~-----~~~~CplCr 65 (80)
T 2d8s_A 16 DICRICHCEGDDE----SPLITPCHCTGSLHFVHQACLQQWIKSS-----DTRCCELCK 65 (80)
T ss_dssp CCCSSSCCCCCSS----SCEECSSSCCSSSCCEETTHHHHHHHHH-----CCSBCSSSC
T ss_pred CCCeEcCccccCC----CeeEeccccCCcCCeeCHHHHHHHHhhC-----CCCCCCCCC
Confidence 5899999755321 24441 2 2334999999999987543 224565553
No 130
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=89.25 E-value=0.15 Score=45.13 Aligned_cols=55 Identities=22% Similarity=0.407 Sum_probs=32.9
Q ss_pred ccccccccccccCCc----------cCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENEGC----------ERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs----------~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
+..|.||...-.... ......+.-..|+..||..||..|..... ......||.|+
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~--~~~~~~CP~CR 89 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN--KDGSLQCPSCK 89 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC--CSSCCBCTTTC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc--CCCCCcCCCCC
Confidence 458999987642211 11112344568999999999998763211 11345666664
No 131
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.22 E-value=0.21 Score=42.20 Aligned_cols=67 Identities=19% Similarity=0.487 Sum_probs=44.6
Q ss_pred CccccccCccccCCCcccccCCccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCC
Q 004423 151 LSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 230 (754)
Q Consensus 151 ~s~RW~~~~slC~~C~~lf~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~ 230 (754)
..|+|......|..|...+ ...|++|...|...+. .+.-..|.+.||..|+. .+.. ....||.||.
T Consensus 7 ~~w~~~~~~~~C~IC~~~~--~~~C~iC~~~~~~~~~--~~~~~~C~H~FH~~Ci~----~Wl~------~~~~CP~CR~ 72 (81)
T 2ecl_A 7 GMWSWDVECDTCAICRVQV--MDACLRCQAENKQEDC--VVVWGECNHSFHNCCMS----LWVK------QNNRCPLCQQ 72 (81)
T ss_dssp CCCCCSCCCSCBTTTTBCT--TSCCTTHHHHTCTTTC--CEEEETTSCEEEHHHHH----HHTT------TCCBCTTTCC
T ss_pred EEeeecCCCCCCcccChhh--hccCcccccccCCCce--EEEeCCCCCccChHHHH----HHHH------hCCCCCCcCC
Confidence 4567766667788887655 3459999887755432 23334699999999944 1211 1358999996
Q ss_pred C
Q 004423 231 E 231 (754)
Q Consensus 231 ~ 231 (754)
.
T Consensus 73 ~ 73 (81)
T 2ecl_A 73 D 73 (81)
T ss_dssp B
T ss_pred C
Confidence 5
No 132
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=88.89 E-value=0.12 Score=44.49 Aligned_cols=37 Identities=22% Similarity=0.644 Sum_probs=26.2
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
.+..|.||...-..+ +.+....|+..||..|+..|..
T Consensus 39 ~~~~C~IC~~~~~~~-----~~~~~l~C~H~Fh~~Ci~~wl~ 75 (91)
T 2l0b_A 39 QEMCCPICCSEYVKG-----DVATELPCHHYFHKPCVSIWLQ 75 (91)
T ss_dssp SCSEETTTTEECCTT-----CEEEEETTTEEEEHHHHHHHHT
T ss_pred CCCCCcccChhhcCC-----CcEEecCCCChHHHHHHHHHHH
Confidence 346899998754211 3344456999999999998764
No 133
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=88.84 E-value=0.85 Score=39.01 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=45.1
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecCceeeEeeeccc
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELGKQGVRFVPQKQ 749 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-g~~~~~~~gk~~vr~~~~~~ 749 (754)
.+|..+-....-||.|+.++|+.|.....++.|.|-| |..++|.+- .+|-||...
T Consensus 11 ~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~--~Lr~l~~~l 66 (78)
T 2d9t_A 11 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLS--NIKPVQTEA 66 (78)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGG--GEEECCCCC
T ss_pred CcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHH--HeEeCCHHH
Confidence 4788888888779999999999998743458999887 999999874 688887654
No 134
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=87.99 E-value=0.12 Score=50.37 Aligned_cols=50 Identities=20% Similarity=0.621 Sum_probs=37.4
Q ss_pred cccccccccccccCCccCCCceEEeC--cCCCccchhccCCCccc---cccCCCCCccCCCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQN---RDLFHWSSWKCPSCR 90 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd--~C~rsYH~~CL~p~~e~---~~~v~~~~W~Cp~Ck 90 (754)
.+.+|.+|..+| +|+.|+ .|.+.|-..||.....+ ........|.|--|.
T Consensus 78 ~~~yC~wC~~Gg--------~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 78 YQSYCTICCGGR--------EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SBSSCTTTSCCS--------EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CcceeeEecCCC--------eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 346999999977 999999 89999999999754322 112345889877663
No 135
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.83 E-value=0.17 Score=43.24 Aligned_cols=34 Identities=26% Similarity=0.678 Sum_probs=27.8
Q ss_pred cccccccccccCCccCCCceEEeCcCCCccchhccCCCccc
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQN 75 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~ 75 (754)
..|.||...-. .-+.|..|+..||..|+..|...
T Consensus 16 ~~C~IC~~~i~-------~g~~C~~C~h~fH~~Ci~kWl~~ 49 (74)
T 2ct0_A 16 KICNICHSLLI-------QGQSCETCGIRMHLPCVAKYFQS 49 (74)
T ss_dssp CBCSSSCCBCS-------SSEECSSSCCEECHHHHHHHSTT
T ss_pred CcCcchhhHcc-------cCCccCCCCchhhHHHHHHHHHh
Confidence 58999998653 33589999999999999987653
No 136
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=87.75 E-value=0.17 Score=45.62 Aligned_cols=41 Identities=15% Similarity=0.428 Sum_probs=26.4
Q ss_pred ccccccccccccCC----------ccCCCceEEeCcCCCccchhccCCCcc
Q 004423 34 NVMCRLCFVGENEG----------CERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 34 d~~C~vC~~gG~~g----------s~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
++.|.||...-... ....+..+.-..|+..||..|+..|..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~ 87 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK 87 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH
Confidence 46899998754211 011123345558999999999998864
No 137
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=87.13 E-value=1 Score=35.54 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=34.4
Q ss_pred ccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecC
Q 004423 694 IGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELG 738 (754)
Q Consensus 694 ~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-g~~~~~~~g 738 (754)
+|-.+-...+.||.|+.++|..|.....+..|.|.| |..+++.+.
T Consensus 4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~ 49 (54)
T 3s6w_A 4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLS 49 (54)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGG
T ss_pred CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHH
Confidence 577788888889999999999997533348888877 888877653
No 138
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=87.05 E-value=1.1 Score=38.36 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=46.9
Q ss_pred hhhhHHHHHHhccccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecCceeeEeeec
Q 004423 679 IMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELGKQGVRFVPQ 747 (754)
Q Consensus 679 ~~d~~~il~~lg~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-g~~~~~~~gk~~vr~~~~ 747 (754)
++++..--....+=.+|-.+-...+.||.|+.++|+.|.....++.|.|.| |..+++.+ ..+|-||.
T Consensus 5 ~l~~~~~~e~~~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~--~~Lr~l~~ 72 (77)
T 3pnw_C 5 ILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLL--SNIKPIQT 72 (77)
T ss_dssp ------CHHHHTTCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEG--GGEECC--
T ss_pred ccccccchhhcCCCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeH--HHeEECCh
Confidence 344554445566678899999999889999999999997543448888877 88888775 45777765
No 139
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.52 E-value=0.17 Score=41.37 Aligned_cols=36 Identities=22% Similarity=0.670 Sum_probs=25.1
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
+..|.||...-... ..+.. ..|+..||..|+..|..
T Consensus 15 ~~~C~IC~~~~~~~----~~~~~-~~C~H~f~~~Ci~~~~~ 50 (74)
T 2ep4_A 15 HELCAVCLEDFKPR----DELGI-CPCKHAFHRKCLIKWLE 50 (74)
T ss_dssp SCBCSSSCCBCCSS----SCEEE-ETTTEEEEHHHHHHHHH
T ss_pred CCCCcCCCcccCCC----CcEEE-cCCCCEecHHHHHHHHH
Confidence 45899999864211 12322 36999999999988764
No 140
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=86.49 E-value=1.1 Score=36.87 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=37.4
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecC
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELG 738 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-g~~~~~~~g 738 (754)
.+|-.+-..++.||.|+.++|..|.....+..|.|.| |..+++.+.
T Consensus 10 ~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~ 56 (64)
T 4a4f_A 10 KVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL 56 (64)
T ss_dssp CTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHH
Confidence 5788899999889999999999998632348899887 787777654
No 141
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.36 E-value=0.48 Score=38.34 Aligned_cols=46 Identities=22% Similarity=0.720 Sum_probs=29.9
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
.+..|.+|...-. +-+.- .|+..||..|+..+.... .....||.|+
T Consensus 19 ~~~~C~IC~~~~~-------~~~~~-~CgH~fC~~Ci~~~~~~~----~~~~~CP~Cr 64 (73)
T 2ysl_A 19 EEVICPICLDILQ-------KPVTI-DCGHNFCLKCITQIGETS----CGFFKCPLCK 64 (73)
T ss_dssp CCCBCTTTCSBCS-------SEEEC-TTCCEEEHHHHHHHCSSS----CSCCCCSSSC
T ss_pred cCCEeccCCcccC-------CeEEc-CCCChhhHHHHHHHHHcC----CCCCCCCCCC
Confidence 3468999998542 22222 899999999998765411 1334566653
No 142
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=86.03 E-value=0.2 Score=38.44 Aligned_cols=46 Identities=24% Similarity=0.710 Sum_probs=31.7
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
+..|.||...-.. .+..+....|+..||..|+..|.... ..||.|+
T Consensus 5 ~~~C~IC~~~~~~----~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP~Cr 50 (55)
T 2ecm_A 5 SSGCPICLEDIHT----SRVVAHVLPCGHLLHRTCYEEMLKEG-------YRCPLCS 50 (55)
T ss_dssp CCSCTTTCCCCCT----TTSCEEECTTSCEEETTHHHHHHHHT-------CCCTTSC
T ss_pred CCcCcccChhhcC----CCcCeEecCCCCcccHHHHHHHHHcC-------CcCCCCC
Confidence 3589999885421 12456677899999999998875432 4566663
No 143
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=85.47 E-value=0.36 Score=39.79 Aligned_cols=47 Identities=19% Similarity=0.602 Sum_probs=30.7
Q ss_pred ccccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 32 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 32 ~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
..+..|.+|...-. +-+.-..|+..||..|+..|.... ....||.|+
T Consensus 13 ~~~~~C~IC~~~~~-------~p~~~~~CgH~fC~~Ci~~~~~~~-----~~~~CP~Cr 59 (74)
T 2yur_A 13 PDELLCLICKDIMT-------DAVVIPCCGNSYCDECIRTALLES-----DEHTCPTCH 59 (74)
T ss_dssp CGGGSCSSSCCCCT-------TCEECSSSCCEECTTHHHHHHHHS-----SSSCCSSSC
T ss_pred CCCCCCcCCChHHh-------CCeEcCCCCCHHHHHHHHHHHHhc-----CCCcCCCCC
Confidence 34569999987542 333333499999999998876432 234566663
No 144
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.81 E-value=0.29 Score=41.43 Aligned_cols=41 Identities=17% Similarity=0.541 Sum_probs=25.4
Q ss_pred ccccccccccccCC-------ccCCCceEEeCcCCCccchhccCCCcc
Q 004423 34 NVMCRLCFVGENEG-------CERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 34 d~~C~vC~~gG~~g-------s~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
++.|.||...-... ....+..+.-..|+..||..|+..|..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~ 62 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK 62 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH
Confidence 35788888754210 001122344447999999999998765
No 145
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=84.78 E-value=1.4 Score=38.89 Aligned_cols=54 Identities=7% Similarity=-0.015 Sum_probs=41.6
Q ss_pred ccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecCceeeEeeec
Q 004423 692 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELGKQGVRFVPQ 747 (754)
Q Consensus 692 da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-g~~~~~~~gk~~vr~~~~ 747 (754)
=.+|-.+-..++.||.|+.++|..|.....++.|.|.| |..++|.+-. +|-|+.
T Consensus 11 ~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~--Lrp~~~ 65 (88)
T 1g5v_A 11 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSD--LLSPIC 65 (88)
T ss_dssp CCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGG--CBCCC-
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHH--cccCCh
Confidence 46799999999889999999999998632348898876 8888887653 555543
No 146
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=84.03 E-value=0.21 Score=54.67 Aligned_cols=50 Identities=26% Similarity=0.697 Sum_probs=36.9
Q ss_pred cccccccccccccCCccCCCceEEeC--cCCCccchhccCCCcccc---ccCCCCCccCCCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQNR---DLFHWSSWKCPSCR 90 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd--~C~rsYH~~CL~p~~e~~---~~v~~~~W~Cp~Ck 90 (754)
.+.+|.+|..+| +|+.|+ .|.+.|...|+....-+. .......|.|--|.
T Consensus 92 ~~~yCr~C~~Gg--------~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~ 146 (386)
T 2pv0_B 92 YQSYCSICCSGE--------TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCL 146 (386)
T ss_dssp SBCSCTTTCCCS--------SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTS
T ss_pred CcccceEcCCCC--------eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcC
Confidence 356999999977 899999 999999999997643111 11124789887663
No 147
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=82.64 E-value=0.29 Score=37.58 Aligned_cols=48 Identities=31% Similarity=0.621 Sum_probs=31.3
Q ss_pred CccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 172 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 172 gnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
...|++|...+.+.+. .+....|.+.||..|+. .|. .....||.|+..
T Consensus 5 ~~~C~IC~~~~~~~~~--~~~~~~C~H~f~~~Ci~----~w~------~~~~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELEDGEE--ARFLPRCGHGFHAECVD----MWL------GSHSTCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCCTTSC--CEECSSSCCEECTTHHH----HTT------TTCCSCSSSCCC
T ss_pred CCcCccCCccccCCCc--eEECCCCCCcccHHHHH----HHH------HcCCcCcCCCCE
Confidence 3468899887755443 23334699999999953 111 124679999864
No 148
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=82.61 E-value=0.3 Score=42.73 Aligned_cols=44 Identities=25% Similarity=0.717 Sum_probs=32.7
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
+..|.+|...-. +-+.|..|+..||..|+..|.... ...||.|+
T Consensus 22 ~~~C~IC~~~~~-------~p~~~~~CgH~FC~~Ci~~~~~~~------~~~CP~Cr 65 (100)
T 3lrq_A 22 VFRCFICMEKLR-------DARLCPHCSKLCCFSCIRRWLTEQ------RAQCPHCR 65 (100)
T ss_dssp HTBCTTTCSBCS-------SEEECTTTCCEEEHHHHHHHHHHT------CSBCTTTC
T ss_pred CCCCccCCcccc-------CccccCCCCChhhHHHHHHHHHHC------cCCCCCCC
Confidence 358999998642 667889999999999998876432 14566663
No 149
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=83.18 E-value=0.26 Score=45.73 Aligned_cols=46 Identities=24% Similarity=0.421 Sum_probs=40.4
Q ss_pred hccccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCccccee
Q 004423 689 LGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLE 736 (754)
Q Consensus 689 lg~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~~ 736 (754)
-|.=++|-.||+..+ |+.|-.|||..|. .-|+..|-||||+.+||.
T Consensus 54 kG~l~vG~~ve~~~~-~~~~~~~~I~~i~-D~S~YtVVFdDGD~ktLr 99 (118)
T 2lcd_A 54 KGPLRVGAIVETRTS-DGSFQEAIISKLT-DASWYTVVFDDGDERTLR 99 (118)
Confidence 477789999999996 7899999998874 568899999999999985
No 150
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.07 E-value=0.7 Score=36.56 Aligned_cols=45 Identities=22% Similarity=0.700 Sum_probs=30.5
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 89 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~C 89 (754)
.+..|.||...-. +..+. .|+..||..|+..+.... .....||.|
T Consensus 19 ~~~~C~IC~~~~~------~p~~~--~CgH~fC~~Ci~~~~~~~----~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ------KPVTI--DCGHNFCLKCITQIGETS----CGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS------SCEEC--TTSSEECHHHHHHHHHHC----SSCCCCSCC
T ss_pred cCCCCCcCCchhC------CeEEe--CCCCcchHHHHHHHHHcC----CCCCcCcCC
Confidence 3468999997542 12332 899999999998876521 134567766
No 151
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.03 E-value=0.42 Score=39.05 Aligned_cols=35 Identities=11% Similarity=0.341 Sum_probs=26.2
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
.+..|.+|...-. +-+.-..|+..||..|+..|..
T Consensus 14 ~~~~C~IC~~~~~-------~p~~~~~CgH~fC~~Ci~~~~~ 48 (72)
T 2djb_A 14 PYILCSICKGYLI-------DATTITECLHTFCKSCIVRHFY 48 (72)
T ss_dssp GGGSCTTTSSCCS-------SCEECSSSCCEECHHHHHHHHH
T ss_pred CCCCCCCCChHHH-------CcCEECCCCCHHHHHHHHHHHH
Confidence 3569999987542 3444468999999999987754
No 152
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=81.93 E-value=1.1 Score=36.53 Aligned_cols=48 Identities=23% Similarity=0.492 Sum_probs=30.0
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 89 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~C 89 (754)
+..|.+|...-.. .++ ..|+..||..|+..+.............||.|
T Consensus 12 ~~~C~IC~~~~~~------p~~--l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~C 59 (79)
T 2egp_A 12 EVTCPICLELLTE------PLS--LDCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59 (79)
T ss_dssp CCEETTTTEECSS------CCC--CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSS
T ss_pred CCCCcCCCcccCC------eeE--CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCC
Confidence 4589999985421 222 27999999999998765321111234556665
No 153
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=81.80 E-value=0.7 Score=41.75 Aligned_cols=66 Identities=24% Similarity=0.406 Sum_probs=32.8
Q ss_pred CCcccCCCCCCCCCCCCccccccCccccCCCccc-ccCCccCccccccccCCCCCCceeccCcCCeecccC
Q 004423 135 KHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRL-FVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQC 204 (754)
Q Consensus 135 ~C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~~l-f~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eC 204 (754)
.|..|..|+......+...-+..+.++|..|... |.....|..|.+.....+ ..|. .-...||..|
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e--~~~~--a~~~~~H~~C 94 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE--MTMR--VKDKVYHLEC 94 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS--EEEE--ETTEEEEGGG
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc--eeEe--eCCceECccC
Confidence 4444667776542212222334466778777642 222226888887654322 1111 1245567666
No 154
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=81.78 E-value=1.1 Score=42.68 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=30.9
Q ss_pred CCcccCCCCCCCCCCCCccccccCccccCCCcccccCCccCccccccccCCCCCCceeccCcCCeecccC
Q 004423 135 KHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQC 204 (754)
Q Consensus 135 ~C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~~lf~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eC 204 (754)
.|..|..|+....+.. . ...+.++|..|... ..+..|..|.+.....+ ++. ..-...||..|
T Consensus 32 ~CF~C~~C~~~L~~~~--f-~~~g~~yC~~~y~~-~f~~~C~~C~~~I~~~~---~v~-~a~~~~~H~~C 93 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERC--F-SRGESVYCKDDFFK-RFGTKCAACQLGIPPTQ---VVR-RAQDFVYHLHC 93 (169)
T ss_dssp TTSBCTTTCCBCCSCC--E-ESSSCEECHHHHHH-HHSCBCTTTCCBCCTTS---EEE-EETTEEEEGGG
T ss_pred ccCccCCCCCcCCCCC--c-ccCCeeeecccccc-cccccccccccccCCCc---EEE-EcCCceEeeCC
Confidence 3444666766543321 1 23456677666531 12345777776543321 211 12356778777
No 155
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.77 E-value=0.71 Score=37.55 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=23.7
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
+..|.||...-. +.+.- .|+..||..|+..|..
T Consensus 15 ~~~C~IC~~~~~-------~~~~~-~CgH~fC~~Ci~~~~~ 47 (71)
T 2d8t_A 15 VPECAICLQTCV-------HPVSL-PCKHVFCYLCVKGASW 47 (71)
T ss_dssp CCBCSSSSSBCS-------SEEEE-TTTEEEEHHHHHHCTT
T ss_pred CCCCccCCcccC-------CCEEc-cCCCHHHHHHHHHHHH
Confidence 358999987542 22222 6999999999987653
No 156
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=81.55 E-value=1 Score=43.28 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=31.5
Q ss_pred CCcccCCCCCCCCCCCCccccccCccccCCCcccccCCccCccccccccCCCCCCceeccCcCCeecccC
Q 004423 135 KHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQC 204 (754)
Q Consensus 135 ~C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~~lf~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eC 204 (754)
.|+.|..|+....+.. . ...+.++|..|... ..+..|..|.+.....+ ++. ..-..+||..|
T Consensus 86 ~CF~C~~C~~~L~~~~--f-~~~g~~yC~~~y~~-~f~~kC~~C~~~I~~~~---~v~-~a~~~~~H~~C 147 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERC--F-SRGESVYCKDDFFK-RFGTKCAACQLGIPPTQ---VVR-RAQDFVYHLHC 147 (182)
T ss_dssp STTSCTTTCCCCSSCC--E-EETTEEECHHHHHH-TTSCCCTTTCCCCCSSC---CCC-EETTEECCTTT
T ss_pred ccCccCCCCCccCCCc--e-eECCEeeecCcccc-ccccccccCCCccCCCc---eEE-ecCCCCEEeCC
Confidence 3444667776544322 1 23456777776532 12346888877553322 110 12345677777
No 157
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=81.44 E-value=0.29 Score=47.48 Aligned_cols=65 Identities=23% Similarity=0.305 Sum_probs=30.2
Q ss_pred CcccCCCCCCCCCCCCccccccCccccCCCccc-ccCCccCccccccccCCCCCCceeccCcCCeecccC
Q 004423 136 HTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRL-FVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQC 204 (754)
Q Consensus 136 C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~~l-f~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eC 204 (754)
|+.|..|+......+...-...+.++|..|... |.....|..|.+.....+ ..|. .-...||..|
T Consensus 32 CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e--~~i~--a~~~~~H~~C 97 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASE--LVMR--AQGNVYHLKC 97 (188)
T ss_dssp GCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTS--EEEE--ETTEEECGGG
T ss_pred CcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCc--EEEE--cCCCEEeCCC
Confidence 334666665421101111223456778777642 222226888887654322 1111 1245567666
No 158
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=80.74 E-value=0.3 Score=39.82 Aligned_cols=46 Identities=24% Similarity=0.597 Sum_probs=28.5
Q ss_pred cccccccccccCCccCCCceEEe--CcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 35 VMCRLCFVGENEGCERARRMLSC--KSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~C--d~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
..|.||...+. + .-+..| ...-+.||..||..|.... +.+.|+-|+
T Consensus 7 ~~CrIC~~~~~---~--~l~~PC~C~gs~~~~H~~Cl~~W~~~~-----~~~~C~~C~ 54 (60)
T 1vyx_A 7 PVCWICNEELG---N--ERFRACGCTGELENVHRSCLSTWLTIS-----RNTACQICG 54 (60)
T ss_dssp CEETTTTEECS---C--CCCCSCCCSSGGGSCCHHHHHHHHHHH-----TCSBCTTTC
T ss_pred CEeEEeecCCC---C--ceecCcCCCCchhhhHHHHHHHHHHhC-----CCCccCCCC
Confidence 58999987542 1 123444 2334599999999987532 235555553
No 159
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=80.70 E-value=0.34 Score=38.79 Aligned_cols=34 Identities=15% Similarity=0.527 Sum_probs=25.2
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
+..|.+|..... +-.....|+..||..|+..|..
T Consensus 5 ~~~C~IC~~~~~-------~~~~~~~C~H~fc~~Ci~~~~~ 38 (68)
T 1chc_A 5 AERCPICLEDPS-------NYSMALPCLHAFCYVCITRWIR 38 (68)
T ss_dssp CCCCSSCCSCCC-------SCEEETTTTEEESTTHHHHHHH
T ss_pred CCCCeeCCcccc-------CCcEecCCCCeeHHHHHHHHHh
Confidence 358999988542 3235568999999999987654
No 160
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=80.37 E-value=2.8 Score=40.74 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=41.1
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEe-cCCcccceecCceeeEeeec
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITL-DDSRVKTLELGKQGVRFVPQ 747 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~-d~g~~~~~~~gk~~vr~~~~ 747 (754)
.+|.-+-+..+-|+.|+.|+|+.|..++ +.|.| |-|..+++.+. .+|.||.
T Consensus 53 ~~g~~c~a~~~~d~~wyRa~V~~v~~~~--~~V~~vDyG~~~~v~~~--~l~~l~~ 104 (218)
T 2wac_A 53 KRGDLVAAQFTLDNQWYRAKVERVQGSN--ATVLYIDYGNKETLPTN--RLAALPP 104 (218)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEEETTE--EEEEETTTCCEEEEEGG--GEEECCG
T ss_pred CcCCEEEEEECCCCeEEEEEEEEecCCe--EEEEEEecCCeEEEchH--HcccCCh
Confidence 5788999988779999999999998866 88886 55999988654 4666653
No 161
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=80.29 E-value=1 Score=37.03 Aligned_cols=48 Identities=35% Similarity=0.639 Sum_probs=30.7
Q ss_pred CccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 172 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 172 gnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
...|+||...|..... +.--.|.+.||..|+. . |.. ....||.|+..-
T Consensus 15 ~~~C~IC~~~~~~~~~---~~~~~C~H~fc~~Ci~---~-~~~------~~~~CP~Cr~~~ 62 (78)
T 2ect_A 15 GLECPVCKEDYALGES---VRQLPCNHLFHDSCIV---P-WLE------QHDSCPVCRKSL 62 (78)
T ss_dssp SCCCTTTTSCCCTTSC---EEECTTSCEEETTTTH---H-HHT------TTCSCTTTCCCC
T ss_pred CCCCeeCCccccCCCC---EEEeCCCCeecHHHHH---H-HHH------cCCcCcCcCCcc
Confidence 3468899877654332 2223589999999954 2 211 236899999763
No 162
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=79.96 E-value=0.4 Score=44.23 Aligned_cols=42 Identities=17% Similarity=0.509 Sum_probs=0.4
Q ss_pred ccccccccccccCCc----------cCCCceEEeCcCCCccchhccCCCccc
Q 004423 34 NVMCRLCFVGENEGC----------ERARRMLSCKSCGKKYHRNCLKNWAQN 75 (754)
Q Consensus 34 d~~C~vC~~gG~~gs----------~~~eeLL~Cd~C~rsYH~~CL~p~~e~ 75 (754)
++.|.||...-.... ...+..+.-..|+..||..|+..|...
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT 99 (117)
T ss_dssp C---------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc
Confidence 468999987532100 011122333479999999999998653
No 163
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.59 E-value=0.42 Score=38.01 Aligned_cols=40 Identities=25% Similarity=0.639 Sum_probs=27.5
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
+..|.||...-... ......+.-..|+..||..|+..|..
T Consensus 15 ~~~C~IC~~~~~~~-~~~~~~~~~~~CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 15 TVSCPICMDGYSEI-VQNGRLIVSTECGHVFCSQCLRDSLK 54 (69)
T ss_dssp CCCCTTTCCCHHHH-TTTTCCEEECSSSCEEEHHHHHHHHH
T ss_pred CCCCcccCcccccc-ccccCCeEeCCCCChhcHHHHHHHHH
Confidence 45899999854211 01124556679999999999988754
No 164
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.62 E-value=1.1 Score=37.41 Aligned_cols=51 Identities=24% Similarity=0.501 Sum_probs=33.2
Q ss_pred CccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 172 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 172 gnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
...|++|...|.+.+..+++. .|.+.||..|+.. +... ......||.|+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~--~CgH~fC~~Ci~~----~~~~---~~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLL--HCGHTICRQCLEK----LLAS---SINGVRCPFCSKI 65 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEEC--SSSCEEEHHHHHH----HHHH---CSSCBCCTTTCCC
T ss_pred CCCCccCCccccccCCCeEEC--CCCChhhHHHHHH----HHHc---CCCCcCCCCCCCc
Confidence 346899988876654323332 6899999999541 2111 1236899999975
No 165
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.05 E-value=0.77 Score=38.22 Aligned_cols=33 Identities=12% Similarity=0.337 Sum_probs=24.5
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
...|.+|...-. +-+. ..|+..||..|+..+..
T Consensus 15 ~~~C~IC~~~~~-------~p~~-~~CgH~fC~~Ci~~~~~ 47 (81)
T 2csy_A 15 PFRCFICRQAFQ-------NPVV-TKCRHYFCESCALEHFR 47 (81)
T ss_dssp CSBCSSSCSBCC-------SEEE-CTTSCEEEHHHHHHHHH
T ss_pred CCCCcCCCchhc-------CeeE-ccCCCHhHHHHHHHHHH
Confidence 358999988542 2222 58999999999988754
No 166
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.88 E-value=0.89 Score=37.90 Aligned_cols=49 Identities=22% Similarity=0.539 Sum_probs=30.5
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
+..|.+|...-... +....-..|+..||..|+..+.... .....||.|+
T Consensus 15 ~~~C~IC~~~~~~~----~~~~~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP~Cr 63 (88)
T 2ct2_A 15 VLECPICMESFTEE----QLRPKLLHCGHTICRQCLEKLLASS----INGVRCPFCS 63 (88)
T ss_dssp CCBCTTTCCBCCTT----SSCEEECSSSCEEEHHHHHHHHHHC----SSCBCCTTTC
T ss_pred CCCCccCCcccccc----CCCeEECCCCChhhHHHHHHHHHcC----CCCcCCCCCC
Confidence 35899999864311 1112233799999999998875432 1235666653
No 167
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=77.51 E-value=0.92 Score=39.98 Aligned_cols=55 Identities=15% Similarity=0.293 Sum_probs=32.7
Q ss_pred ccCccccccccCCC-----------CC-CceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 173 NYCPVCLKVYRDSE-----------ST-PMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 173 nyCpVC~K~Y~Dsd-----------gg-~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
..|+||...+.+.. .. ..+.-..|.+.||..|+. . |..... ......||.||...
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~---~-wl~~~~-~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLL---A-MYCNGN-KDGSLQCPSCKTIY 92 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHH---H-HHHHTC-CSSCCBCTTTCCBS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHH---H-HHHccc-CCCCCcCCCCCCcc
Confidence 35888887764432 11 122245699999999954 2 222111 13468999999753
No 168
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=77.24 E-value=0.47 Score=41.02 Aligned_cols=34 Identities=21% Similarity=0.553 Sum_probs=25.4
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
+..|.+|...-. +-+....|+..||..|+..+..
T Consensus 22 ~~~C~IC~~~~~-------~p~~~~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 22 LLRCGICFEYFN-------IAMIIPQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp HTBCTTTCSBCS-------SEEECTTTCCEEEHHHHHHHHT
T ss_pred CCCcccCChhhC-------CcCEECCCCCHhhHHHHHHHHH
Confidence 458999988542 3344468999999999987654
No 169
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=76.88 E-value=0.36 Score=38.80 Aligned_cols=40 Identities=25% Similarity=0.639 Sum_probs=27.7
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
+..|.+|...-... ......+....|+..||..|+..|..
T Consensus 10 ~~~C~IC~~~~~~~-~~~~~~~~~~~CgH~fc~~Ci~~~~~ 49 (71)
T 3ng2_A 10 TVSCPICMDGYSEI-VQNGRLIVSTECGHVFCSQCLRDSLK 49 (71)
T ss_dssp CCBCTTTCCBHHHH-HTTTCCEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCcccChhhhcc-ccccCCeEeCCCCChHhHHHHHHHHH
Confidence 35899999753210 01125566779999999999988764
No 170
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=76.84 E-value=0.71 Score=43.61 Aligned_cols=35 Identities=17% Similarity=0.563 Sum_probs=27.2
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
.+..|.+|...-. +-+.+..|+..||..|+..|..
T Consensus 53 ~~~~C~IC~~~~~-------~p~~~~~CgH~fC~~Ci~~~~~ 87 (165)
T 2ckl_B 53 SELMCPICLDMLK-------NTMTTKECLHRFCADCIITALR 87 (165)
T ss_dssp HHHBCTTTSSBCS-------SEEEETTTCCEEEHHHHHHHHH
T ss_pred CCCCCcccChHhh-------CcCEeCCCCChhHHHHHHHHHH
Confidence 3458999987542 4566679999999999988754
No 171
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=76.78 E-value=1.4 Score=36.14 Aligned_cols=48 Identities=23% Similarity=0.531 Sum_probs=30.2
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
+..|.+|...-. +-+. ..|+..||..|+..+..... .......||.|+
T Consensus 19 ~~~C~IC~~~~~-------~p~~-~~CgH~fC~~Ci~~~~~~~~-~~~~~~~CP~Cr 66 (85)
T 2ecw_A 19 EVTCPICLELLK-------EPVS-ADCNHSFCRACITLNYESNR-NTDGKGNCPVCR 66 (85)
T ss_dssp TTSCTTTCSCCS-------SCEE-CTTSCCBCHHHHHHHHHHSB-CTTSCBCCTTTC
T ss_pred CCCCcCCChhhC-------ccee-CCCCCHHHHHHHHHHHHhcc-CCCCCCCCCCCC
Confidence 468999988542 2222 36999999999987654321 112346676663
No 172
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=75.95 E-value=1.6 Score=33.17 Aligned_cols=47 Identities=32% Similarity=0.725 Sum_probs=31.1
Q ss_pred ccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 173 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 173 nyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
..|+||...+.+.+. .+....|.+.||..|+. .|... ...||.|+..
T Consensus 6 ~~C~IC~~~~~~~~~--~~~~~~CgH~fc~~Ci~----~~~~~------~~~CP~Cr~~ 52 (55)
T 2ecm_A 6 SGCPICLEDIHTSRV--VAHVLPCGHLLHRTCYE----EMLKE------GYRCPLCSGP 52 (55)
T ss_dssp CSCTTTCCCCCTTTS--CEEECTTSCEEETTHHH----HHHHH------TCCCTTSCCS
T ss_pred CcCcccChhhcCCCc--CeEecCCCCcccHHHHH----HHHHc------CCcCCCCCCc
Confidence 458899887654332 34455689999999954 22221 2789999864
No 173
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=75.53 E-value=0.97 Score=49.22 Aligned_cols=56 Identities=25% Similarity=0.533 Sum_probs=36.5
Q ss_pred ccCccccccccCCCCCCceecc--CcCCeecccCCCCChHHHhhhccCC----CCceeCCCCCCC
Q 004423 173 NYCPVCLKVYRDSESTPMVCCD--VCQRWVHCQCDGISDEKYLQFQVDG----NLQYRCPTCRGE 231 (754)
Q Consensus 173 nyCpVC~K~Y~Dsdgg~MLqCD--sC~~wFH~eCd~LsdE~ye~~~~d~----d~~Y~CptCr~~ 231 (754)
.-|++|.....++...+-..|. .|.+-||..|+. +-+......+ -..-.||.|+..
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~---kWLrs~~~sRqSFnvi~G~CPyCr~p 370 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLE---EWFKTLMDGKTFLEVSFGQCPFCKAK 370 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGH---HHHHHHHSSSCTTTCCEEECTTTCCE
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHH---HHHHhCCCccccccccCCCCCCCCCc
Confidence 3599999877664555666798 899999999943 3222221110 124679999863
No 174
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.93 E-value=1 Score=36.66 Aligned_cols=50 Identities=26% Similarity=0.595 Sum_probs=31.4
Q ss_pred CccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCCCC
Q 004423 172 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQ 234 (754)
Q Consensus 172 gnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~~q 234 (754)
...|+||...+.+... +.--.|.+.||..|+. .|... ...||.|+..-..
T Consensus 15 ~~~C~IC~~~~~~~~~---~~~~~C~H~f~~~Ci~----~~~~~------~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDE---LGICPCKHAFHRKCLI----KWLEV------RKVCPLCNMPVLQ 64 (74)
T ss_dssp SCBCSSSCCBCCSSSC---EEEETTTEEEEHHHHH----HHHHH------CSBCTTTCCBCSS
T ss_pred CCCCcCCCcccCCCCc---EEEcCCCCEecHHHHH----HHHHc------CCcCCCcCccccc
Confidence 3468899887654432 2112489999999953 22221 2489999976443
No 175
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=74.51 E-value=1.1 Score=39.16 Aligned_cols=48 Identities=21% Similarity=0.514 Sum_probs=34.7
Q ss_pred ccccCccccCCCcccccCCccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 154 RWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 154 RW~~~~slC~~C~~lf~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
.|...+..|..|...|...-|||-|... +-.|..|.. ..|+|+.|-.-
T Consensus 13 ~~~~~~~~C~~C~~~~~~~afCPeCgq~--------Le~lkACGA----------------------~~yFC~~C~~L 60 (81)
T 2jrp_A 13 ERNGDTAHCETCAKDFSLQALCPDCRQP--------LQVLKACGA----------------------VDYFCQNGHGL 60 (81)
T ss_dssp EECSSEEECTTTCCEEEEEEECSSSCSC--------CCEEEETTE----------------------EEECCTTTTCC
T ss_pred ccCCCceECccccccCCCcccCcchhhH--------HHHHHhcCC----------------------cCeeeccCCCE
Confidence 4666677799999988888899999753 333666654 15999999753
No 176
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.26 E-value=1.1 Score=35.84 Aligned_cols=34 Identities=15% Similarity=0.475 Sum_probs=24.6
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
.+..|.+|...-.. ..+ ..|+..||..|+..+..
T Consensus 14 ~~~~C~IC~~~~~~------p~~--~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 14 DKYKCEKCHLVLCS------PKQ--TECGHRFCESCMAALLS 47 (66)
T ss_dssp CCEECTTTCCEESS------CCC--CSSSCCCCHHHHHHHHT
T ss_pred cCCCCCCCChHhcC------eeE--CCCCCHHHHHHHHHHHH
Confidence 34689999876421 222 48999999999987653
No 177
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.54 E-value=1.5 Score=33.67 Aligned_cols=44 Identities=23% Similarity=0.794 Sum_probs=29.3
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 89 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~C 89 (754)
+..|.+|...-.. ..+ ..|+..||..|+..+.... .....||.|
T Consensus 15 ~~~C~IC~~~~~~------p~~--~~CgH~fC~~Ci~~~~~~~----~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKE------PVI--IECGHNFCKACITRWWEDL----ERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSS------CCC--CSSCCCCCHHHHHHHTTSS----CCSCCCSCC
T ss_pred CCCCccCCcccCc------cEe--CCCCCccCHHHHHHHHHhc----CCCCCCCCC
Confidence 4689999986421 222 3799999999998764321 134567766
No 178
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=72.86 E-value=6.2 Score=37.07 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=39.6
Q ss_pred cccceEEEEecCCC----ceeeeeeEEeecCeeEEEEEecC---CcccceecCceeeEeeeccc
Q 004423 693 AIGKRVEVHQQSDN----SWHKGVVTDTVEGTSTLSITLDD---SRVKTLELGKQGVRFVPQKQ 749 (754)
Q Consensus 693 a~~krvev~~~sd~----~w~~g~v~~~~~~~~~~~v~~d~---g~~~~~~~gk~~vr~~~~~~ 749 (754)
++|-.|||....++ .|..|+|..+.+.. +.|.++. ---+.++ -+.+|.+++..
T Consensus 62 ~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg~f--~~V~y~~~~~~~~EiV~--~~rlR~~n~~~ 121 (128)
T 3h8z_A 62 TEGDEVEVYSRANEQEPCGWWLARVRMMKGDF--YVIEYAACDATYNEIVT--LERLRPVNPNP 121 (128)
T ss_dssp CTTCEEEEEECC---CCCEEEEEEEEEEETTE--EEEEETTC----CEEEC--GGGEEECCCCC
T ss_pred CCCCEEEEEecCCCCCcCccEEEEEEEeeCCE--EEEEEcCCCCCcceEEe--hhheEeCCCCC
Confidence 78999999998877 89999999999877 8999666 3345555 45688887653
No 179
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.86 E-value=0.68 Score=37.29 Aligned_cols=32 Identities=19% Similarity=0.744 Sum_probs=24.1
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
+..|.+|..... + .-..|+..||..|+..|..
T Consensus 15 ~~~C~IC~~~~~-------~--~~~~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 15 EEECCICMDGRA-------D--LILPCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCCSSSCCSCC-------S--EEETTTEEECHHHHHHSSC
T ss_pred CCCCeeCCcCcc-------C--cccCCCCcccHHHHHHHHH
Confidence 468999988542 3 3347999999999987654
No 180
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=72.47 E-value=3.9 Score=35.09 Aligned_cols=63 Identities=16% Similarity=0.264 Sum_probs=30.6
Q ss_pred CCcccCCCCCCCCCCCCccccccCccccCCCcccccCCccCccccccccCCCCCCceeccCcCCeecccC
Q 004423 135 KHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQC 204 (754)
Q Consensus 135 ~C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~~lf~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eC 204 (754)
.|..|..|+....+. ..-...+.++|..|... ..+..|..|.+.....+ ..|. .=...||.+|
T Consensus 32 ~CF~C~~C~~~L~~~--~~~~~~g~~yC~~cy~~-~~~~~C~~C~~~I~~~~--~~~~--a~~~~~H~~C 94 (101)
T 2cup_A 32 TCFRCAKCLHPLANE--TFVAKDNKILCNKCTTR-EDSPKCKGCFKAIVAGD--QNVE--YKGTVWHKDC 94 (101)
T ss_dssp TTCCCSSSCCCTTSS--CCEEETTEEECHHHHTT-CCCCBCSSSCCBCCSSS--CEEE--SSSCEEETTT
T ss_pred cCCcccccCCCCCcC--eeECcCCEEEChhHhhh-hcCCccccCCCccccCC--eEEE--eCCcchHHhC
Confidence 344466676654321 11123355677666532 12345777776553221 1121 2245678777
No 181
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.92 E-value=1.5 Score=35.95 Aligned_cols=48 Identities=25% Similarity=0.679 Sum_probs=31.5
Q ss_pred CccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 172 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 172 gnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
...|++|...+...+ .+..-.|.+.||..|+. .|... ...||.|+..-
T Consensus 23 ~~~C~IC~~~~~~~~---~~~~l~C~H~fh~~Ci~----~w~~~------~~~CP~Cr~~~ 70 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQ---LLRVLPCNHEFHAKCVD----KWLKA------NRTCPICRADS 70 (75)
T ss_dssp CCEETTTTEECCBTC---EEEEETTTEEEETTHHH----HHHHH------CSSCTTTCCCC
T ss_pred CCCCeECCcccCCCC---eEEEECCCCHhHHHHHH----HHHHc------CCcCcCcCCcC
Confidence 346899987765433 34444599999999954 22221 35899999753
No 182
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=71.83 E-value=1.3 Score=38.94 Aligned_cols=34 Identities=18% Similarity=0.409 Sum_probs=25.9
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
+..|.+|...-. +-+....|+..||..|+..+..
T Consensus 15 ~~~C~IC~~~~~-------~p~~~~~CgH~fC~~Ci~~~~~ 48 (108)
T 2ckl_A 15 HLMCVLCGGYFI-------DATTIIECLHSFCKTCIVRYLE 48 (108)
T ss_dssp GTBCTTTSSBCS-------SEEEETTTCCEEEHHHHHHHHT
T ss_pred cCCCccCChHHh-------CcCEeCCCCChhhHHHHHHHHH
Confidence 458999987542 4455569999999999987653
No 183
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=71.69 E-value=2 Score=34.39 Aligned_cols=47 Identities=28% Similarity=0.669 Sum_probs=30.0
Q ss_pred ccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 173 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 173 nyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
..|+||...+..... +..-.|.+.||..|+. . |... ...||.|+..-
T Consensus 15 ~~C~IC~~~~~~~~~---~~~~~C~H~fc~~Ci~---~-~~~~------~~~CP~Cr~~~ 61 (69)
T 2kiz_A 15 EKCTICLSILEEGED---VRRLPCMHLFHQVCVD---Q-WLIT------NKKCPICRVDI 61 (69)
T ss_dssp CSBTTTTBCCCSSSC---EEECTTSCEEEHHHHH---H-HHHH------CSBCTTTCSBS
T ss_pred CCCeeCCccccCCCc---EEEeCCCCHHHHHHHH---H-HHHc------CCCCcCcCccc
Confidence 458889876644332 3344599999999954 1 2221 34699999753
No 184
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=71.20 E-value=1 Score=41.49 Aligned_cols=41 Identities=22% Similarity=0.726 Sum_probs=27.5
Q ss_pred cccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
..|.+|...-. +-+. ..|++.||..|+..|.. ....||.|+
T Consensus 54 ~~C~iC~~~~~-------~~~~-~~CgH~fc~~Ci~~~~~-------~~~~CP~Cr 94 (138)
T 4ayc_A 54 LQCIICSEYFI-------EAVT-LNCAHSFCSYCINEWMK-------RKIECPICR 94 (138)
T ss_dssp SBCTTTCSBCS-------SEEE-ETTSCEEEHHHHHHHTT-------TCSBCTTTC
T ss_pred CCCcccCcccC-------CceE-CCCCCCccHHHHHHHHH-------cCCcCCCCC
Confidence 47999988542 2222 37999999999987643 223566664
No 185
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=70.47 E-value=2 Score=38.61 Aligned_cols=67 Identities=22% Similarity=0.476 Sum_probs=38.9
Q ss_pred cccccCccccCCCcccccCCccCccccccccCCCC-CCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 153 VRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSES-TPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 153 ~RW~~~~slC~~C~~lf~KgnyCpVC~K~Y~Dsdg-g~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
|+|......|..|...+. ..|++|...+....+ ...+.--.|.+.||..|+. .+.. ....||.||..
T Consensus 31 w~~d~~~d~CaIC~~~~~--~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~----~Wl~------~~~~CP~Cr~~ 98 (106)
T 3dpl_R 31 WAWDIVVDNCAICRNHIM--DLCIECQANQASATSEECTVAWGVCNHAFHFHCIS----RWLK------TRQVCPLDNRE 98 (106)
T ss_dssp EEESSCSCCCSSSCSCTT--SCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHH----HHHT------TCSBCSSSCSB
T ss_pred eecCCCCCCCccCChhHh--CcCchhhccccccCCccceEeecccCcEECHHHHH----HHHH------cCCcCcCCCCc
Confidence 445555566777765543 357777643321111 1123345799999999943 2211 25789999975
No 186
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=70.38 E-value=0.8 Score=39.32 Aligned_cols=46 Identities=28% Similarity=0.650 Sum_probs=30.1
Q ss_pred ccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 173 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 173 nyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
..|++|...|...+. +..-.|.+.||..|+. . |.. ....||.|+..
T Consensus 41 ~~C~IC~~~~~~~~~---~~~l~C~H~Fh~~Ci~---~-wl~------~~~~CP~Cr~~ 86 (91)
T 2l0b_A 41 MCCPICCSEYVKGDV---ATELPCHHYFHKPCVS---I-WLQ------KSGTCPVCRCM 86 (91)
T ss_dssp SEETTTTEECCTTCE---EEEETTTEEEEHHHHH---H-HHT------TTCBCTTTCCB
T ss_pred CCCcccChhhcCCCc---EEecCCCChHHHHHHH---H-HHH------cCCcCcCcCcc
Confidence 459999877755432 2223499999999943 1 211 24689999964
No 187
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=70.19 E-value=6.7 Score=36.72 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=40.6
Q ss_pred hhhhHHHHHHhccccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCccccee
Q 004423 679 IMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLE 736 (754)
Q Consensus 679 ~~d~~~il~~lg~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~~ 736 (754)
|..-.| .+||.-+.|-.|+|.| .||.=+.|+...-. -...+.|.|+||++-+++
T Consensus 54 Ivs~dc--~~~GpP~~G~~V~V~W-~DG~~y~a~f~g~~-~~~~YtV~FeDgs~~~~k 107 (123)
T 2xdp_A 54 IVSRDC--LKLGPPAEGEVVQVKW-PDGKLYGAKYFGSN-IAHMYQVEFEDGSQIAMK 107 (123)
T ss_dssp BCSSCH--HHHCCCCTTCEEEEEC-TTSCEEEEEEEEEE-EEEEEEEECTTSCEEEEE
T ss_pred cccccc--cccCCCCCCCEEEEEc-CCCCEEeEEEeeee-eEEEEEEEECCCCeEEec
Confidence 344444 5679999999999999 67777777765542 234688999999987775
No 188
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.41 E-value=2.5 Score=36.17 Aligned_cols=51 Identities=22% Similarity=0.518 Sum_probs=31.6
Q ss_pred CccCccccccccCCCCCCcee---ccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 172 GNYCPVCLKVYRDSESTPMVC---CDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 172 gnyCpVC~K~Y~Dsdgg~MLq---CDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
...|.||...|.+.+ +++. |....++||..|+. ++.... ....||.|+...
T Consensus 15 ~~~C~IC~~~~~~~~--~l~~pC~C~Gs~h~fH~~Cl~----~Wl~~~----~~~~CplCr~~~ 68 (80)
T 2d8s_A 15 QDICRICHCEGDDES--PLITPCHCTGSLHFVHQACLQ----QWIKSS----DTRCCELCKYEF 68 (80)
T ss_dssp SCCCSSSCCCCCSSS--CEECSSSCCSSSCCEETTHHH----HHHHHH----CCSBCSSSCCBC
T ss_pred CCCCeEcCccccCCC--eeEeccccCCcCCeeCHHHHH----HHHhhC----CCCCCCCCCCee
Confidence 346888987664432 4442 33445999999954 232221 247999999764
No 189
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.53 E-value=1.5 Score=35.93 Aligned_cols=48 Identities=25% Similarity=0.614 Sum_probs=29.2
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
+..|.+|...-.. .++ ..|+..||..|+..+...... ......||.|+
T Consensus 19 ~~~C~IC~~~~~~------p~~--~~CgH~fC~~Ci~~~~~~~~~-~~~~~~CP~Cr 66 (85)
T 2ecv_A 19 EVTCPICLELLTQ------PLS--LDCGHSFCQACLTANHKKSML-DKGESSCPVCR 66 (85)
T ss_dssp CCCCTTTCSCCSS------CBC--CSSSCCBCTTHHHHHHHHHHH-TTSCCCCTTTC
T ss_pred CCCCCCCCcccCC------cee--CCCCCHHHHHHHHHHHHHhhc-CCCCCcCCCCC
Confidence 4689999985421 222 279999999999876432100 11245566653
No 190
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=68.48 E-value=1.7 Score=36.84 Aligned_cols=46 Identities=20% Similarity=0.621 Sum_probs=29.4
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
.+..|.+|...-. +-+.-..|++.|+..|+..+.... ....||.|+
T Consensus 12 ~~~~C~IC~~~~~-------~p~~~~~CgH~fC~~Ci~~~~~~~-----~~~~CP~Cr 57 (92)
T 3ztg_A 12 DELLCLICKDIMT-------DAVVIPCCGNSYCDECIRTALLES-----DEHTCPTCH 57 (92)
T ss_dssp TTTEETTTTEECS-------SCEECTTTCCEECHHHHHHHHHHC-----TTCCCTTTC
T ss_pred cCCCCCCCChhhc-------CceECCCCCCHHHHHHHHHHHHhc-----CCCcCcCCC
Confidence 3468999998542 222323499999999998765321 234666663
No 191
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=68.35 E-value=0.52 Score=36.85 Aligned_cols=39 Identities=26% Similarity=0.668 Sum_probs=26.4
Q ss_pred cccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
..|.+|...-.... .....+....|+..||..|+..|..
T Consensus 4 ~~C~IC~~~~~~~~-~~~~~~~~~~CgH~fc~~Ci~~~~~ 42 (64)
T 2xeu_A 4 VSCPICMDGYSEIV-QNGRLIVSTECGHVFCSQCLRDSLK 42 (64)
T ss_dssp CBCTTTCCBHHHHH-HTTCCEEEETTSCEEEHHHHHHHHH
T ss_pred CCCCccChhhhCcc-ccCCCEEeCCCCCchhHHHHHHHHH
Confidence 58999987542100 0124455669999999999988754
No 192
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=67.28 E-value=2.9 Score=36.92 Aligned_cols=43 Identities=21% Similarity=0.570 Sum_probs=29.7
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
+..|.+|...-. +.... .|++.||..|+..+... ....||.|+
T Consensus 15 ~~~C~iC~~~~~------~p~~~--~CgH~fC~~Ci~~~~~~------~~~~CP~Cr 57 (115)
T 3l11_A 15 ECQCGICMEILV------EPVTL--PCNHTLCKPCFQSTVEK------ASLCCPFCR 57 (115)
T ss_dssp HHBCTTTCSBCS------SCEEC--TTSCEECHHHHCCCCCT------TTSBCTTTC
T ss_pred CCCCccCCcccC------ceeEc--CCCCHHhHHHHHHHHhH------CcCCCCCCC
Confidence 468999997542 12222 89999999999987542 345677764
No 193
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=67.18 E-value=3.6 Score=39.44 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=8.3
Q ss_pred cccCCCcccCCCCCC
Q 004423 131 YLCPKHTKCHSCGSN 145 (754)
Q Consensus 131 W~CP~C~~C~~Cg~~ 145 (754)
++.+.|+.|..|+..
T Consensus 142 ~~H~~CF~C~~C~~~ 156 (182)
T 2jtn_A 142 VYHLHCFACVVCKRQ 156 (182)
T ss_dssp ECCTTTCCCTTTCCC
T ss_pred CEEeCCCcCCCCCCC
Confidence 334556666666654
No 194
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=66.87 E-value=10 Score=32.35 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=36.6
Q ss_pred cccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccceec
Q 004423 691 KDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLEL 737 (754)
Q Consensus 691 ~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~~~ 737 (754)
+=.+|..|-++| +|+-.+=|+|++...++ .-|.|+|-..--+++
T Consensus 15 ~~~~geDVL~rw-~DG~fYLGtIVd~~~~~--ClV~FeD~S~~Wv~~ 58 (69)
T 2xk0_A 15 TYALQEDVFIKC-NDGRFYLGTIIDQTSDQ--YLIRFDDQSEQWCEP 58 (69)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEEEEEECSSC--EEEEETTCCEEEECT
T ss_pred ccccCCeEEEEe-cCCCEEEEEEEecCCce--EEEEecCCcceeeeH
Confidence 446889999998 99999999998887777 899999987655554
No 195
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=65.91 E-value=1.8 Score=39.17 Aligned_cols=28 Identities=25% Similarity=0.602 Sum_probs=22.6
Q ss_pred cccccCccccCCCcccccCCccCccccc
Q 004423 153 VRWFLGYTCCDACGRLFVKGNYCPVCLK 180 (754)
Q Consensus 153 ~RW~~~~slC~~C~~lf~KgnyCpVC~K 180 (754)
..|...+..|..|...|.+.-+||-|..
T Consensus 42 L~~~g~~~hC~~C~~~f~~~a~CPdC~q 69 (101)
T 2jne_A 42 LDQDNGHARCRSCGEFIEMKALCPDCHQ 69 (101)
T ss_dssp EEEETTEEEETTTCCEEEEEEECTTTCS
T ss_pred ceecCCEEECccccchhhccccCcchhh
Confidence 4576667779999998888889998864
No 196
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=64.98 E-value=2.1 Score=43.69 Aligned_cols=44 Identities=27% Similarity=0.732 Sum_probs=31.5
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 89 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~C 89 (754)
-..|.+|..--- .-+.|..|+..||..|+..+...+ ..-.||.|
T Consensus 180 i~~C~iC~~iv~-------~g~~C~~C~~~~H~~C~~~~~~~~-----~~~~CP~C 223 (238)
T 3nw0_A 180 VKICNICHSLLI-------QGQSCETCGIRMHLPCVAKYFQSN-----AEPRCPHC 223 (238)
T ss_dssp CCBCTTTCSBCS-------SCEECSSSCCEECHHHHHHHTTTC-----SSCBCTTT
T ss_pred CCcCcchhhHHh-------CCcccCccChHHHHHHHHHHHHhC-----CCCCCCCC
Confidence 358999998643 347899999999999998754322 23356655
No 197
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=64.36 E-value=2 Score=40.80 Aligned_cols=28 Identities=29% Similarity=0.565 Sum_probs=15.5
Q ss_pred cccccccccccCCccCCCceEEeCcCCCccchhcc
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCL 69 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL 69 (754)
..|..|...-.+ ..++. .-++.||..|+
T Consensus 7 ~~C~~C~~~I~~-----~~~~~--a~~~~wH~~CF 34 (169)
T 2rgt_A 7 PMCAGCDQHILD-----RFILK--ALDRHWHSKCL 34 (169)
T ss_dssp CBBSSSSSBCCS-----SSCEE--CSSCEECTTTS
T ss_pred CccccCCCccCC-----cEEEE--ECCcEEccccC
Confidence 578888775321 12332 24677776665
No 198
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=63.95 E-value=3.2 Score=40.20 Aligned_cols=11 Identities=27% Similarity=0.489 Sum_probs=6.4
Q ss_pred eEEeCcCCCcc
Q 004423 54 MLSCKSCGKKY 64 (754)
Q Consensus 54 LL~Cd~C~rsY 64 (754)
.-.|..|++..
T Consensus 7 ~~~C~~C~~~I 17 (192)
T 1b8t_A 7 GKKCGVCQKAV 17 (192)
T ss_dssp CEECTTTCCEE
T ss_pred CCcCccCCCee
Confidence 34666666654
No 199
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=63.85 E-value=9.5 Score=38.07 Aligned_cols=51 Identities=12% Similarity=0.136 Sum_probs=39.3
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecCceeeEeeec
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELGKQGVRFVPQ 747 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-g~~~~~~~gk~~vr~~~~ 747 (754)
.+|.-+-+... |+.|+.++|+.|..+. ++.|.|-| |..+++.+ ..+|.||.
T Consensus 67 ~~G~~c~a~~~-d~~wyRa~V~~~~~~~-~~~V~~vDyGn~~~v~~--~~lr~l~~ 118 (246)
T 2hqx_A 67 RRGEFCIAKFV-DGEWYRARVEKVESPA-KIHVFYIDYGNREVLPS--TRLGTLSP 118 (246)
T ss_dssp CTTCEEEEECT-TSCEEEEEEEEEEETT-EEEEEETTTCCEEEECG--GGEECCCG
T ss_pred CCCCEEEEEcC-CCCEEEEEEEEEcCCC-eEEEEEEeCCCeEEEeH--HHhhcCCH
Confidence 47888888876 9999999999998643 48888655 99988854 34666664
No 200
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.59 E-value=2.7 Score=33.19 Aligned_cols=50 Identities=26% Similarity=0.651 Sum_probs=32.4
Q ss_pred CccCccccccccCC-CCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 172 GNYCPVCLKVYRDS-ESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 172 gnyCpVC~K~Y~Ds-dgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
...|+||...+.+. .....+.-..|.+.||..|+. . +... ...||.|+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~---~-~~~~------~~~CP~Cr~~ 65 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR---D-SLKN------ANTCPTCRKK 65 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHH---H-HHHH------CSSCTTTCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHH---H-HHHc------CCCCCCCCCc
Confidence 34688998877432 223444556799999999953 1 2111 3589999865
No 201
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.71 E-value=2.5 Score=34.63 Aligned_cols=50 Identities=22% Similarity=0.459 Sum_probs=30.7
Q ss_pred ccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 173 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 173 nyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
..|++|...+.+ +++ -.|.+.||..|+.. +............||.|+..-
T Consensus 20 ~~C~IC~~~~~~----p~~--~~CgH~fC~~Ci~~----~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 20 VTCPICLELLTQ----PLS--LDCGHSFCQACLTA----NHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCTTTCSCCSS----CBC--CSSSCCBCTTHHHH----HHHHHHHTTSCCCCTTTCCSS
T ss_pred CCCCCCCcccCC----cee--CCCCCHHHHHHHHH----HHHHhhcCCCCCcCCCCCCcc
Confidence 468899877643 222 16899999999541 111111123478999999753
No 202
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=62.33 E-value=1.7 Score=37.94 Aligned_cols=45 Identities=18% Similarity=0.545 Sum_probs=29.1
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
...|.+|...-.. ..+ ..|++.||..|+..+.... .....||.|+
T Consensus 21 ~~~C~IC~~~~~~------p~~--~~CgH~fC~~Ci~~~~~~~----~~~~~CP~Cr 65 (112)
T 1jm7_A 21 ILECPICLELIKE------PVS--TKCDHIFCKFCMLKLLNQK----KGPSQCPLCK 65 (112)
T ss_dssp HTSCSSSCCCCSS------CCB--CTTSCCCCSHHHHHHHHSS----SSSCCCTTTS
T ss_pred CCCCcccChhhcC------eEE--CCCCCHHHHHHHHHHHHhC----CCCCCCcCCC
Confidence 3589999875421 222 3799999999998765432 1335666663
No 203
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=62.05 E-value=2.1 Score=38.40 Aligned_cols=43 Identities=23% Similarity=0.578 Sum_probs=28.4
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
+..|.+|...-. +.+. ..|++.||..|+..+... ....||.|+
T Consensus 52 ~~~C~IC~~~~~------~p~~--~~CgH~fC~~Ci~~~~~~------~~~~CP~Cr 94 (124)
T 3fl2_A 52 TFQCICCQELVF------RPIT--TVCQHNVCKDCLDRSFRA------QVFSCPACR 94 (124)
T ss_dssp HTBCTTTSSBCS------SEEE--CTTSCEEEHHHHHHHHHT------TCCBCTTTC
T ss_pred CCCCCcCChHHc------CcEE--eeCCCcccHHHHHHHHhH------CcCCCCCCC
Confidence 357999988542 1222 389999999999876541 234566663
No 204
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=61.45 E-value=3.6 Score=47.12 Aligned_cols=83 Identities=20% Similarity=0.334 Sum_probs=24.8
Q ss_pred cccccccccccCCccCCCceEEeCcCCCccchhccCCCcccc----------ccCCCCCcc---CCCCCcccccccc--C
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNR----------DLFHWSSWK---CPSCRICEICRRT--G 99 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~----------~~v~~~~W~---Cp~Ck~C~vC~~s--g 99 (754)
.+|.+|...-.+ -..+-+.|..|+-..|..|.......- .....-.|. =+...+|..|+.. |
T Consensus 49 ~~C~~C~~~i~g---~~~qg~~C~~C~~~~H~~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~~~~~~C~~C~~~l~g 125 (674)
T 3pfq_A 49 TFCSHCTDFIWG---FGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYG 125 (674)
T ss_dssp --------------------------------------------------------CCCCCEECCSSCCCCSSSCSCCBB
T ss_pred Cccccccccccc---cCCceeECCCCCCCcChhhcCcCcccCCCcccccccccccCCcceeecCCCCCCCCCccccccch
Confidence 589999874211 112568899999999999987532210 000011222 1122377777653 2
Q ss_pred CCCCceeCCCCCCccccccCC
Q 004423 100 DPNKFMFCRRCDAAYHCYCQH 120 (754)
Q Consensus 100 d~~kLL~Cd~C~raYH~~CL~ 120 (754)
-...-+.|..|...+|..|..
T Consensus 126 ~~~qg~~C~~C~~~~H~~C~~ 146 (674)
T 3pfq_A 126 LIHQGMKCDTCMMNVHKRCVM 146 (674)
T ss_dssp SSSCEECCSSSCCCBCSSTTS
T ss_pred hhcCccccccCCcchhhhhhh
Confidence 222468999999999999986
No 205
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=60.95 E-value=2.4 Score=33.84 Aligned_cols=49 Identities=27% Similarity=0.672 Sum_probs=32.3
Q ss_pred ccCccccccccCC-CCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 173 NYCPVCLKVYRDS-ESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 173 nyCpVC~K~Y~Ds-dgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
..|++|...+.+. ..+..+....|.+.||..|+. . +... ...||.|+..
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~---~-~~~~------~~~CP~Cr~~ 60 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR---D-SLKN------ANTCPTCRKK 60 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHH---H-HHHH------CSBCTTTCCB
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHH---H-HHHc------CCCCCCCCCc
Confidence 4588998776442 223445566799999999954 1 2111 3589999975
No 206
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=60.75 E-value=1.6 Score=40.80 Aligned_cols=34 Identities=24% Similarity=0.546 Sum_probs=25.1
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
.+-.|.+|...-. +-+. ..|+..|+..|+..+..
T Consensus 30 ~~~~C~IC~~~~~-------~pv~-~~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 30 AKYLCSACRNVLR-------RPFQ-AQCGHRYCSFCLASILS 63 (141)
T ss_dssp GGGBCTTTCSBCS-------SEEE-CTTSCEEEHHHHHHHGG
T ss_pred cCcCCCCCChhhc-------CcEE-CCCCCccCHHHHHHHHh
Confidence 4468999998542 2233 48999999999988653
No 207
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=60.62 E-value=6.3 Score=42.98 Aligned_cols=38 Identities=32% Similarity=0.824 Sum_probs=27.7
Q ss_pred cccccccccccCCccCCCceEEeC--cCCCccchhccCCCcc
Q 004423 35 VMCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd--~C~rsYH~~CL~p~~e 74 (754)
..|.||...-.++ +.-.-..|. .|++.||..||..|..
T Consensus 309 ~ECaICys~~l~~--g~lPdk~C~n~~C~h~FH~~CL~kWLr 348 (381)
T 3k1l_B 309 LRCNICFAYRLDG--GEVPLVSCDNAKCVLKCHAVCLEEWFK 348 (381)
T ss_dssp CSCSSSCCSSCTT--CCCCCBCCSCTTCCCCBCSGGGHHHHH
T ss_pred ccCcccceeecCC--CCCccccccCCccCCccchHHHHHHHH
Confidence 5899999864221 111346798 9999999999998864
No 208
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=59.37 E-value=6 Score=35.37 Aligned_cols=47 Identities=21% Similarity=0.385 Sum_probs=24.8
Q ss_pred CCcccCCCCCCCCCCCCccccccCccccCCCcccccCCccCccccccccC
Q 004423 135 KHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRD 184 (754)
Q Consensus 135 ~C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~~lf~KgnyCpVC~K~Y~D 184 (754)
.|..|..|+....+. ..-...+.++|..|... ..+..|..|.+...+
T Consensus 29 ~CF~C~~C~~~L~~~--~f~~~~g~~yC~~cy~~-~~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGE--IYVMVNDKPVCKPCYVK-NHAVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTS--EEEEETTEEEEHHHHHH-HSCCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcC--EEEeECCEEechHHhCc-CcCccCcccCCcCCc
Confidence 344466677654321 11123356677776532 124568888876543
No 209
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=59.18 E-value=10 Score=33.14 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=30.5
Q ss_pred ccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCCC
Q 004423 173 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECY 233 (754)
Q Consensus 173 nyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~~ 233 (754)
..|++|...+.+ -+....|.+.||..|+. . +.. ....||.|+..-.
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~---~-~~~------~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 16 LMCVLCGGYFID-----ATTIIECLHSFCKTCIV---R-YLE------TSKYCPICDVQVH 61 (108)
T ss_dssp TBCTTTSSBCSS-----EEEETTTCCEEEHHHHH---H-HHT------SCSBCTTTCCBSC
T ss_pred CCCccCChHHhC-----cCEeCCCCChhhHHHHH---H-HHH------hCCcCcCCCcccc
Confidence 458889876533 23445799999999943 1 111 1378999997643
No 210
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.86 E-value=5.2 Score=32.10 Aligned_cols=47 Identities=21% Similarity=0.612 Sum_probs=30.0
Q ss_pred CccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 172 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 172 gnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
...|+||...+.+ +.+. .|.+.||..|+. .+.. .......||.|+..
T Consensus 20 ~~~C~IC~~~~~~----~~~~--~CgH~fC~~Ci~----~~~~---~~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 20 EVICPICLDILQK----PVTI--DCGHNFCLKCIT----QIGE---TSCGFFKCPLCKTS 66 (73)
T ss_dssp CCBCTTTCSBCSS----EEEC--TTCCEEEHHHHH----HHCS---SSCSCCCCSSSCCC
T ss_pred CCEeccCCcccCC----eEEc--CCCChhhHHHHH----HHHH---cCCCCCCCCCCCCc
Confidence 3468899876542 2222 799999999954 1111 11246799999975
No 211
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=58.01 E-value=5.7 Score=45.47 Aligned_cols=30 Identities=23% Similarity=0.557 Sum_probs=0.0
Q ss_pred cccccccc--CCCCCceeCCCCCCccccccCC
Q 004423 91 ICEICRRT--GDPNKFMFCRRCDAAYHCYCQH 120 (754)
Q Consensus 91 ~C~vC~~s--gd~~kLL~Cd~C~raYH~~CL~ 120 (754)
+|..|+.- |-...-+.|..|.-..|..|..
T Consensus 50 ~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~ 81 (674)
T 3pfq_A 50 FCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHE 81 (674)
T ss_dssp --------------------------------
T ss_pred ccccccccccccCCceeECCCCCCCcChhhcC
Confidence 56666542 2111358899999999999976
No 212
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.07 E-value=24 Score=31.09 Aligned_cols=62 Identities=23% Similarity=0.557 Sum_probs=38.2
Q ss_pred ccccccCCCcccccccc--cccc-ccCCc--cCCCceEEeCcCC-CccchhccCCCccccccCCCCCccCCCCC
Q 004423 23 IAGEEQGQSNTNVMCRL--CFVG-ENEGC--ERARRMLSCKSCG-KKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 23 ~~~~e~~~s~~d~~C~v--C~~g-G~~gs--~~~eeLL~Cd~C~-rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
+++.-.+--.....|.. |.-. |.... ...-+||.|..|+ ..-|..|...... ...|.|..|.
T Consensus 10 e~nAy~eL~~R~~~CdA~~Clc~~GR~~~~~~~~W~L~lC~~Cgs~gtH~~Cs~l~~~------~~~weC~~C~ 77 (85)
T 1weq_A 10 EPGAFSELYQRYRHCDAPICLYEQGRDSFEDEGRWRLILCATCGSHGTHRDCSSLRPN------SKKWECNECL 77 (85)
T ss_dssp CTTCCCCCSSCCCCCCCSCCCSTTCSSCCBSSSTTBCEECSSSCCCEECSGGGTCCTT------CSCCCCTTTS
T ss_pred CcCHHHHHhhCcCccCccccCCCCCcccccCCCCEEEEeCcccCCchhHHHHhCCcCC------CCCEECCcCc
Confidence 33333333444456764 4432 21111 3345899999999 8899999986422 3679998884
No 213
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.36 E-value=2.9 Score=35.61 Aligned_cols=43 Identities=23% Similarity=0.447 Sum_probs=28.0
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
.|.+|...-. .-+.|..|...||..|+..-+... ..-.||.|.
T Consensus 17 ~C~IC~~~i~--~g~~C~~C~h~fH~~Ci~kWl~~~--~~~~CP~Cr 59 (74)
T 2ct0_A 17 ICNICHSLLI--QGQSCETCGIRMHLPCVAKYFQSN--AEPRCPHCN 59 (74)
T ss_dssp BCSSSCCBCS--SSEECSSSCCEECHHHHHHHSTTC--SSCCCTTTC
T ss_pred cCcchhhHcc--cCCccCCCCchhhHHHHHHHHHhc--CCCCCCCCc
Confidence 5666665543 235788999999999998544322 124577764
No 214
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=54.57 E-value=5.5 Score=34.79 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=16.0
Q ss_pred CCceeccC--cCCeecccCCC
Q 004423 188 TPMVCCDV--CQRWVHCQCDG 206 (754)
Q Consensus 188 g~MLqCDs--C~~wFH~eCd~ 206 (754)
+-.|+|.. |..+||..|..
T Consensus 29 GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 29 GASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp SCEEECSCTTTCCEEEHHHHH
T ss_pred cEeEecCCCCCCCcCcHHHHH
Confidence 56789976 99999999954
No 215
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=54.50 E-value=17 Score=31.24 Aligned_cols=52 Identities=21% Similarity=0.324 Sum_probs=39.6
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEe-cCCcccceecCceeeEeeec
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITL-DDSRVKTLELGKQGVRFVPQ 747 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~-d~g~~~~~~~gk~~vr~~~~ 747 (754)
.+|.-+-+..+.|+.|+.++|..|.+.. ++.|.| |=|..+++.+ ..+|.||.
T Consensus 29 ~~G~~c~a~~~~d~~wyRA~I~~~~~~~-~~~V~fvDyGn~e~v~~--~~lr~l~~ 81 (94)
T 3fdr_A 29 HVGDIVAAPLPTNGSWYRARVLGTLENG-NLDLYFVDFGDNGDCPL--KDLRALRS 81 (94)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECTTS-CEEEEETTTCCEEEECG--GGCEECCG
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCCC-eEEEEEEcCCCeEEEEH--HHhhhcCH
Confidence 5788998888889999999999997532 366665 5588887764 45777764
No 216
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=54.03 E-value=3.6 Score=33.65 Aligned_cols=42 Identities=19% Similarity=0.518 Sum_probs=28.4
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 89 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~C 89 (754)
+-.|.+|..... +..+ ..|+..|+..|+..+... +...||.|
T Consensus 8 ~~~C~IC~~~~~------~Pv~--~~CgH~fc~~Ci~~~~~~------~~~~CP~C 49 (78)
T 1t1h_A 8 YFRCPISLELMK------DPVI--VSTGQTYERSSIQKWLDA------GHKTCPKS 49 (78)
T ss_dssp SSSCTTTSCCCS------SEEE--ETTTEEEEHHHHHHHHTT------TCCBCTTT
T ss_pred cCCCCCcccccc------CCEE--cCCCCeecHHHHHHHHHH------CcCCCCCC
Confidence 468999998642 1233 279999999999876532 23456655
No 217
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=53.57 E-value=6.1 Score=34.33 Aligned_cols=46 Identities=26% Similarity=0.649 Sum_probs=31.4
Q ss_pred ccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 173 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 173 nyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
..|++|...+.+ -+.|..|.+.||..|+. . +... ....||.|+..-
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~FC~~Ci~---~-~~~~-----~~~~CP~Cr~~~ 68 (100)
T 3lrq_A 23 FRCFICMEKLRD-----ARLCPHCSKLCCFSCIR---R-WLTE-----QRAQCPHCRAPL 68 (100)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHH---H-HHHH-----TCSBCTTTCCBC
T ss_pred CCCccCCccccC-----ccccCCCCChhhHHHHH---H-HHHH-----CcCCCCCCCCcC
Confidence 358889876542 35678899999999954 2 2111 127999999763
No 218
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=53.05 E-value=13 Score=32.26 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=34.2
Q ss_pred cccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcc
Q 004423 691 KDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRV 732 (754)
Q Consensus 691 ~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~ 732 (754)
+=.+|.-|-++| +|+..+=|+|..|-.-+-+.-|.|+|+..
T Consensus 26 ~f~eGeDVLarw-sDGlfYLGTI~kV~~~~e~ClV~F~D~S~ 66 (79)
T 2m0o_A 26 RLWEGQDVLARW-TDGLLYLGTIKKVDSAREVCLVQFEDDSQ 66 (79)
T ss_dssp CCCTTCEEEBCC-TTSCCCEEEEEEEETTTTEEEEEETTSCE
T ss_pred eeccCCEEEEEe-cCCCEEeEEEEEeccCCCEEEEEEcCCCe
Confidence 445677888999 99999999999997655568899999875
No 219
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=52.93 E-value=12 Score=33.26 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=39.9
Q ss_pred cccceEEEEecCCCceeeeeeEEeec-CeeEEEEEe-cCCcccceecCceeeEeeec
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTVE-GTSTLSITL-DDSRVKTLELGKQGVRFVPQ 747 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~~-~~~~~~v~~-d~g~~~~~~~gk~~vr~~~~ 747 (754)
.+|.-+-+..+-|+.|+.++|+.|.+ ++ +.|.| |=|..+++.+ ..+|.||.
T Consensus 34 ~~G~~c~a~~~~d~~wyRA~V~~~~~~~~--~~V~fvDyGn~e~v~~--~~Lr~l~~ 86 (110)
T 2diq_A 34 HVGDIVAAPLPTNGSWYRARVLGTLENGN--LDLYFVDFGDNGDCPL--KDLRALRS 86 (110)
T ss_dssp CTTCEEEECCTTTCSCEEEEECCCCSSSC--EEEEETTTCCEEEECG--GGCEECCH
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCCCe--EEEEEEeCCCeEEEeh--HHhhcCcH
Confidence 57888888887799999999999986 44 66766 5588888875 45777764
No 220
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=52.88 E-value=3.3 Score=38.09 Aligned_cols=67 Identities=22% Similarity=0.451 Sum_probs=3.0
Q ss_pred cccccCccccCCCcccccCCccCccccccccCCCCC-CceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 153 VRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSEST-PMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 153 ~RW~~~~slC~~C~~lf~KgnyCpVC~K~Y~Dsdgg-~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
|.|...-..|..|...+. .-|++|.-.+....+. -.+.--.|.+.||..|+.. +.. ....||.|+..
T Consensus 42 w~wd~~~d~CaICl~~~~--~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~----Wl~------~~~~CP~Cr~~ 109 (117)
T 4a0k_B 42 WAWDIVVDNCAICRNHIM--DLCIECQANQASATSEECTVAWGVCNHAFHFHCISR----WLK------TRQVCPLDNRE 109 (117)
T ss_dssp EEECCCC-------------------------------------------------------------------------
T ss_pred EeecCCCCcCeECChhhc--CcChhhhcccccccccccccccCCcCceEcHHHHHH----HHH------cCCcCCCCCCe
Confidence 344444455666655442 2355554322111111 1222346999999999652 111 14679999865
No 221
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=52.72 E-value=2.8 Score=32.59 Aligned_cols=49 Identities=27% Similarity=0.672 Sum_probs=31.6
Q ss_pred ccCccccccccCC-CCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCC
Q 004423 173 NYCPVCLKVYRDS-ESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (754)
Q Consensus 173 nyCpVC~K~Y~Ds-dgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~ 231 (754)
..|++|...+.+. .....+....|.+.||..|+. . +... ...||.|+..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~---~-~~~~------~~~CP~Cr~~ 53 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR---D-SLKN------ANTCPTCRKK 53 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHH---H-HHHH------CSBCTTTCCB
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHH---H-HHHc------CCCCCCCCcc
Confidence 3588998776432 122344556799999999954 1 2111 4589999975
No 222
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=51.76 E-value=6.4 Score=37.01 Aligned_cols=45 Identities=27% Similarity=0.671 Sum_probs=31.1
Q ss_pred cCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 174 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 174 yCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
.|+||...+.+ -+.+..|.+.||..|+. . +.. .....||.|+...
T Consensus 56 ~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~---~-~~~-----~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 56 MCPICLDMLKN-----TMTTKECLHRFCADCII---T-ALR-----SGNKECPTCRKKL 100 (165)
T ss_dssp BCTTTSSBCSS-----EEEETTTCCEEEHHHHH---H-HHH-----TTCCBCTTTCCBC
T ss_pred CCcccChHhhC-----cCEeCCCCChhHHHHHH---H-HHH-----hCcCCCCCCCCcC
Confidence 59999877643 24456899999999943 1 211 1257899999764
No 223
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=51.65 E-value=21 Score=33.13 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=37.1
Q ss_pred hhhhHHHHHHhccccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCccccee
Q 004423 679 IMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLE 736 (754)
Q Consensus 679 ~~d~~~il~~lg~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~~ 736 (754)
|..-+| .+||.-+.|-+|+|.| -|+.=+.++...- .-...+.|.|+||.+-+++
T Consensus 53 Ivs~dc--~~~GpP~~G~~V~V~W-~DG~~y~a~f~g~-~~~~~Y~V~feDgs~~~~k 106 (118)
T 2qqr_A 53 IVSQDC--LQFGPPAEGEVVQVRW-TDGQVYGAKFVAS-HPIQMYQVEFEDGSQLVVK 106 (118)
T ss_dssp BCSSCH--HHHCCCCTTCEEEEEC-TTSCEEEEEEEEE-EEEEEEEEEETTSCEEEEC
T ss_pred cccccc--cccCCCCCCCEEEEEc-CCCCEeeeEEece-eEEEEEEEEECCCCEEEEc
Confidence 344445 5779999999999998 4555555554432 1123588999999986664
No 224
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=50.95 E-value=6.5 Score=34.99 Aligned_cols=33 Identities=15% Similarity=0.349 Sum_probs=23.0
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCc
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWA 73 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~ 73 (754)
+..|.+|...-. +-+.-..|+..|+..|+..+.
T Consensus 22 ~~~C~IC~~~~~-------~pv~~~~CgH~fC~~Ci~~~~ 54 (117)
T 1jm7_B 22 LLRCSRCTNILR-------EPVCLGGCEHIFCSNCVSDCI 54 (117)
T ss_dssp TTSCSSSCSCCS-------SCBCCCSSSCCBCTTTGGGGT
T ss_pred CCCCCCCChHhh-------CccEeCCCCCHHHHHHHHHHh
Confidence 358999987542 222222799999999997653
No 225
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=50.79 E-value=4.2 Score=38.34 Aligned_cols=43 Identities=23% Similarity=0.603 Sum_probs=29.1
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCCCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~Ck 90 (754)
+..|.+|...-. +-+. ..|+..||..|+..+... ....||.|+
T Consensus 78 ~~~C~IC~~~~~-------~pv~-~~CgH~fC~~Ci~~~~~~------~~~~CP~Cr 120 (150)
T 1z6u_A 78 SFMCVCCQELVY-------QPVT-TECFHNVCKDCLQRSFKA------QVFSCPACR 120 (150)
T ss_dssp HTBCTTTSSBCS-------SEEE-CTTSCEEEHHHHHHHHHT------TCCBCTTTC
T ss_pred CCEeecCChhhc-------CCEE-cCCCCchhHHHHHHHHHh------CCCcCCCCC
Confidence 358999988542 2222 589999999999876542 234566663
No 226
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.49 E-value=5.4 Score=32.56 Aligned_cols=51 Identities=22% Similarity=0.522 Sum_probs=31.3
Q ss_pred CccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 172 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 172 gnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
...|++|...+.+ +++ -.|.+.||..|+. . |............||.|+..-
T Consensus 19 ~~~C~IC~~~~~~----p~~--~~CgH~fC~~Ci~---~-~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 19 EVTCPICLELLKE----PVS--ADCNHSFCRACIT---L-NYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp TTSCTTTCSCCSS----CEE--CTTSCCBCHHHHH---H-HHHHSBCTTSCBCCTTTCCCC
T ss_pred CCCCcCCChhhCc----cee--CCCCCHHHHHHHH---H-HHHhccCCCCCCCCCCCCCcC
Confidence 3468899876543 222 2489999999954 1 222211123478999999753
No 227
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=50.23 E-value=14 Score=30.06 Aligned_cols=47 Identities=23% Similarity=0.501 Sum_probs=29.7
Q ss_pred ccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 173 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 173 nyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
..|++|...+.+ + +.-..|.+.||..|+. ..+.. .....||.|+...
T Consensus 16 ~~C~IC~~~~~~----p-~~~~~CgH~fC~~Ci~---~~~~~-----~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 16 LLCLICKDIMTD----A-VVIPCCGNSYCDECIR---TALLE-----SDEHTCPTCHQND 62 (74)
T ss_dssp GSCSSSCCCCTT----C-EECSSSCCEECTTHHH---HHHHH-----SSSSCCSSSCCSS
T ss_pred CCCcCCChHHhC----C-eEcCCCCCHHHHHHHH---HHHHh-----cCCCcCCCCCCcC
Confidence 458888876543 2 2333499999999943 21111 1257899999853
No 228
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=50.19 E-value=23 Score=36.02 Aligned_cols=46 Identities=17% Similarity=0.357 Sum_probs=35.4
Q ss_pred ccccccceEEEEecCCCceeeeeeEEeec--CeeEEEEEecCCccccee
Q 004423 690 GKDAIGKRVEVHQQSDNSWHKGVVTDTVE--GTSTLSITLDDSRVKTLE 736 (754)
Q Consensus 690 g~da~~krvev~~~sd~~w~~g~v~~~~~--~~~~~~v~~d~g~~~~~~ 736 (754)
|+=.+|-||=.-+ ..++|++|+|++|.. .--+.-|.|||+..+.|-
T Consensus 7 ~~l~Vg~~vlg~k-~~~~W~rg~v~~I~~~~~g~~YkVkF~~~g~~ivs 54 (213)
T 3dlm_A 7 GDLIVSMRILGKK-RTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLLS 54 (213)
T ss_dssp TTEETTCEEEEEC-TTSBEEEEEEEEEEEETTEEEEEEEESSSCEEEEC
T ss_pred CcEEEccEEEEEe-cCCcEEEEEEEEEEECCCCeEEEEEEcCCCCEEee
Confidence 4447899999888 559999999999865 335689999976655443
No 229
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=50.04 E-value=8.5 Score=33.35 Aligned_cols=46 Identities=24% Similarity=0.614 Sum_probs=29.2
Q ss_pred cCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 174 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 174 yCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
.|++|...+.+. .+ -.|.+.||..|+. .+... ....+.||.|+..-
T Consensus 23 ~C~IC~~~~~~p----~~--~~CgH~fC~~Ci~----~~~~~---~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 23 ECPICLELIKEP----VS--TKCDHIFCKFCML----KLLNQ---KKGPSQCPLCKNDI 68 (112)
T ss_dssp SCSSSCCCCSSC----CB--CTTSCCCCSHHHH----HHHHS---SSSSCCCTTTSCCC
T ss_pred CCcccChhhcCe----EE--CCCCCHHHHHHHH----HHHHh---CCCCCCCcCCCCcC
Confidence 588998766432 22 2699999999943 12111 12457999999753
No 230
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=49.90 E-value=30 Score=28.59 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=34.0
Q ss_pred ccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCccccee
Q 004423 694 IGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLE 736 (754)
Q Consensus 694 ~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~~ 736 (754)
.|.-|-++| +|+..+-|+|..|-...-+.-|.|+|+..--++
T Consensus 6 ~GedVLarw-sDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~ 47 (58)
T 4hcz_A 6 EGQDVLARW-TDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVL 47 (58)
T ss_dssp TTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred cCCEEEEEe-cCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEE
Confidence 467788999 999999999999966654588999999864443
No 231
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=49.89 E-value=4.8 Score=41.03 Aligned_cols=43 Identities=23% Similarity=0.471 Sum_probs=29.3
Q ss_pred ccccccccCCCCCceeCCCCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
.|.+|..--- .-..|..|+..||..|+...... ...-.||.|.
T Consensus 182 ~C~iC~~iv~--~g~~C~~C~~~~H~~C~~~~~~~--~~~~~CP~C~ 224 (238)
T 3nw0_A 182 ICNICHSLLI--QGQSCETCGIRMHLPCVAKYFQS--NAEPRCPHCN 224 (238)
T ss_dssp BCTTTCSBCS--SCEECSSSCCEECHHHHHHHTTT--CSSCBCTTTC
T ss_pred cCcchhhHHh--CCcccCccChHHHHHHHHHHHHh--CCCCCCCCCC
Confidence 6777776553 24889999999999999743321 2345677653
No 232
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=48.03 E-value=12 Score=29.07 Aligned_cols=29 Identities=17% Similarity=0.422 Sum_probs=20.2
Q ss_pred cccccccccccCCccCCCceEEeCcCCCccchhccCC
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKN 71 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p 71 (754)
..|.+|...-.. . .-..|+..|+..|+..
T Consensus 7 ~~C~IC~~~~~~------p--~~l~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 7 LRCQQCQAEAKC------P--KLLPCLHTLCSGCLEA 35 (56)
T ss_dssp SSCSSSCSSCBC------C--SCSTTSCCSBTTTCSS
T ss_pred CCceEeCCccCC------e--EEcCCCCcccHHHHcc
Confidence 579999875421 1 1136999999999875
No 233
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.95 E-value=17 Score=30.31 Aligned_cols=10 Identities=30% Similarity=1.016 Sum_probs=5.2
Q ss_pred CcccCCCCCC
Q 004423 136 HTKCHSCGSN 145 (754)
Q Consensus 136 C~~C~~Cg~~ 145 (754)
|++|..|+..
T Consensus 42 CF~C~~C~~~ 51 (82)
T 2co8_A 42 CFRCHTCEAT 51 (82)
T ss_dssp TCBCSSSCCB
T ss_pred cCEEcCCCCC
Confidence 3345666654
No 234
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.72 E-value=9.4 Score=30.84 Aligned_cols=45 Identities=20% Similarity=0.422 Sum_probs=29.5
Q ss_pred ccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 173 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 173 nyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
..|++|...+.+ .+.-..|.+.||..|+. . +... ...||.|+..-
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~---~-~~~~------~~~CP~Cr~~~ 60 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTITECLHTFCKSCIV---R-HFYY------SNRCPKCNIVV 60 (72)
T ss_dssp GSCTTTSSCCSS-----CEECSSSCCEECHHHHH---H-HHHH------CSSCTTTCCCC
T ss_pred CCCCCCChHHHC-----cCEECCCCCHHHHHHHH---H-HHHc------CCcCCCcCccc
Confidence 458889876543 13345799999999943 1 2111 47899999753
No 235
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=46.27 E-value=30 Score=33.63 Aligned_cols=53 Identities=13% Similarity=0.343 Sum_probs=39.3
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEe-cCCcccceecCceeeEeeecc
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITL-DDSRVKTLELGKQGVRFVPQK 748 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~-d~g~~~~~~~gk~~vr~~~~~ 748 (754)
.+|.-+-+..+.||.||.|.|..+.... ++.|.| |=|..+++.+ ..+|.||..
T Consensus 67 ~~G~~c~a~~~~d~~wyRa~V~~~~~~~-~~~V~~vDyG~~~~v~~--~~l~~l~~~ 120 (201)
T 4b9w_A 67 EIGRPCCAFFSGDGNWYRALVKEILPSG-NVKVHFVDYGNVEEVTT--DQLQAILPQ 120 (201)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECTTS-CEEEEETTTCCEEEECG--GGEEECCGG
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCCC-eEEEEEEccCCEEEEEH--HHhccChHh
Confidence 4688888888889999999999997553 255554 6688887765 357777653
No 236
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=46.05 E-value=9.3 Score=32.30 Aligned_cols=50 Identities=20% Similarity=0.450 Sum_probs=31.2
Q ss_pred ccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCCC
Q 004423 173 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECY 233 (754)
Q Consensus 173 nyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~~ 233 (754)
..|+||...+... ....+.| .|++.|+..|+.. +. ....+.||.||....
T Consensus 12 ~~CpICle~~~~~-d~~~~p~-~CGH~fC~~Cl~~-------~~--~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 12 VECPLCMEPLEID-DINFFPC-TCGYQICRFCWHR-------IR--TDENGLCPACRKPYP 61 (78)
T ss_dssp CBCTTTCCBCCTT-TTTCCSS-TTSCCCCHHHHHH-------HT--TSSCSBCTTTCCBCS
T ss_pred CcCCccCccCccc-ccccccc-CCCCCcCHHHHHH-------HH--hcCCCCCCCCCCccC
Confidence 4699998765322 1223334 6899999999431 10 124689999997643
No 237
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=45.22 E-value=7.6 Score=34.27 Aligned_cols=38 Identities=8% Similarity=-0.061 Sum_probs=26.1
Q ss_pred CCCccccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 29 GQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 29 ~~s~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
...+.+-.|.+|..-.. +..+ ..||..|-..|+..+..
T Consensus 24 ~~~p~~~~CpI~~~~m~------dPV~--~~cGhtf~r~~I~~~l~ 61 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMT------DPVR--LPSGTIMDRSIILRHLL 61 (100)
T ss_dssp SSCSTTTBCTTTCSBCS------SEEE--ETTTEEEEHHHHHHHTT
T ss_pred ccCcHhhCCcCccCccc------CCeE--CCCCCEEchHHHHHHHH
Confidence 33445679999998652 1222 34999999999987653
No 238
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.69 E-value=32 Score=29.23 Aligned_cols=40 Identities=13% Similarity=0.103 Sum_probs=33.3
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCccc
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVK 733 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~ 733 (754)
-+|.-|-.+| +|+-.+-|+|..|-.-+-.--|+|.|+...
T Consensus 11 ~eGqdVLarW-sDGlfYlGtV~kV~~~~~~ClV~FeD~s~~ 50 (68)
T 2e5p_A 11 WEGQDVLARW-TDGLLYLGTIKKVDSAREVCLVQFEDDSQF 50 (68)
T ss_dssp CTTCEEEEEC-TTSSEEEEEEEEEETTTTEEEEEETTTEEE
T ss_pred ccCCEEEEEe-cCCcEEEeEEEEEecCCcEEEEEEccCCee
Confidence 4678888889 999999999999987555577999988754
No 239
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=44.35 E-value=5.7 Score=31.43 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=23.0
Q ss_pred cccccccc-cccCCccCCCceEEeCcCCCccchhccCCCc
Q 004423 35 VMCRLCFV-GENEGCERARRMLSCKSCGKKYHRNCLKNWA 73 (754)
Q Consensus 35 ~~C~vC~~-gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~ 73 (754)
..|.+|.. .-.. ....+.=..|+..||..|+..+.
T Consensus 4 ~~C~IC~~~~~~~----~~~~~~~~~CgH~fC~~Ci~~~~ 39 (65)
T 1g25_A 4 QGCPRCKTTKYRN----PSLKLMVNVCGHTLCESCVDLLF 39 (65)
T ss_dssp TCCSTTTTHHHHC----SSCCEEECTTCCCEEHHHHHHHH
T ss_pred CcCCcCCCCccCC----CccCeecCCCCCHhHHHHHHHHH
Confidence 57999988 3211 11111225899999999998763
No 240
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.99 E-value=9 Score=31.60 Aligned_cols=44 Identities=23% Similarity=0.646 Sum_probs=29.0
Q ss_pred ccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 173 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 173 nyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
..|++|...+.+ +.+ ..|.+.||..|+. ..+ . ....||.|+..-
T Consensus 16 ~~C~IC~~~~~~----p~~--~~CgH~fC~~Ci~---~~~-~------~~~~CP~Cr~~~ 59 (81)
T 2csy_A 16 FRCFICRQAFQN----PVV--TKCRHYFCESCAL---EHF-R------ATPRCYICDQPT 59 (81)
T ss_dssp SBCSSSCSBCCS----EEE--CTTSCEEEHHHHH---HHH-H------HCSBCSSSCCBC
T ss_pred CCCcCCCchhcC----eeE--ccCCCHhHHHHHH---HHH-H------CCCcCCCcCccc
Confidence 358888876633 222 4699999999943 211 1 156899999764
No 241
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=41.36 E-value=45 Score=29.38 Aligned_cols=34 Identities=29% Similarity=0.242 Sum_probs=26.3
Q ss_pred ccccceEEEEecCCCceeeeeeEEee-cCeeEEEEE
Q 004423 692 DAIGKRVEVHQQSDNSWHKGVVTDTV-EGTSTLSIT 726 (754)
Q Consensus 692 da~~krvev~~~sd~~w~~g~v~~~~-~~~~~~~v~ 726 (754)
.-|||.|.|-. +||+=|.|+|..|- ..-|-+-++
T Consensus 14 ~li~KeV~V~l-~dg~~y~G~l~tvDp~s~sIvL~n 48 (86)
T 1y96_A 14 DYIYKEVRVTA-SEKNEYKGWVLTTDPVSANIVLVN 48 (86)
T ss_dssp HTTTCEEEEEE-TTTEEEEEEEEEECTTTCCEEEEE
T ss_pred hhcCCEEEEEE-cCCCEEEEEEEEECCCceEEEEee
Confidence 46999999998 99999999999985 333333333
No 242
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=40.35 E-value=7 Score=34.49 Aligned_cols=33 Identities=18% Similarity=0.449 Sum_probs=24.6
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
+..|.+|...-. +-+. ..|+..||..|+..+..
T Consensus 23 ~~~C~IC~~~~~-------~p~~-~~CgH~fC~~Ci~~~~~ 55 (116)
T 1rmd_A 23 SISCQICEHILA-------DPVE-TSCKHLFCRICILRCLK 55 (116)
T ss_dssp HTBCTTTCSBCS-------SEEE-CTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCCcHhc-------CcEE-cCCCCcccHHHHHHHHh
Confidence 458999987542 2233 58999999999987654
No 243
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=40.30 E-value=14 Score=29.89 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=19.5
Q ss_pred CCCCccccccCCCCCccC---CCCCcccCCCc
Q 004423 109 RCDAAYHCYCQHPPHKNV---SSGPYLCPKHT 137 (754)
Q Consensus 109 ~C~raYH~~CL~Ppl~~v---p~g~W~CP~C~ 137 (754)
.|+..||..|+...+... ......||.|.
T Consensus 29 ~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr 60 (79)
T 2egp_A 29 DCGHSLCRACITVSNKEAVTSMGGKSSCPVCG 60 (79)
T ss_dssp SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSC
T ss_pred CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCC
Confidence 688889999988644321 13366788875
No 244
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=40.30 E-value=13 Score=31.91 Aligned_cols=45 Identities=22% Similarity=0.545 Sum_probs=29.6
Q ss_pred ccCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 173 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 173 nyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
..|++|...+.+ + +....|.+.||..|.. .+.. ....||.|+..-
T Consensus 23 ~~C~IC~~~~~~----p-~~~~~CgH~fC~~Ci~----~~~~------~~~~CP~Cr~~~ 67 (99)
T 2y43_A 23 LRCGICFEYFNI----A-MIIPQCSHNYCSLCIR----KFLS------YKTQCPTCCVTV 67 (99)
T ss_dssp TBCTTTCSBCSS----E-EECTTTCCEEEHHHHH----HHHT------TCCBCTTTCCBC
T ss_pred CCcccCChhhCC----c-CEECCCCCHhhHHHHH----HHHH------CCCCCCCCCCcC
Confidence 358899876643 1 2234699999999943 1211 247899999753
No 245
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=40.02 E-value=26 Score=28.37 Aligned_cols=36 Identities=22% Similarity=0.504 Sum_probs=24.8
Q ss_pred CCccCccccccccCCCCCCceeccCcCCeecccCCCC
Q 004423 171 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI 207 (754)
Q Consensus 171 KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~L 207 (754)
...||.+|.+..-. -..+-++|..|...+|..|...
T Consensus 22 ~pt~C~~C~~~l~G-l~~qg~~C~~C~~~~Hk~C~~~ 57 (65)
T 2enz_A 22 SPTFCEHCGTLLWG-LARQGLKCDACGMNVHHRCQTK 57 (65)
T ss_dssp SCCBCSSSCCBCCC-SSSCSEEESSSCCEECTTTTTT
T ss_pred CCcCchhcChhhee-cCCcccccCCCCCccCHhHHhh
Confidence 44567777665421 1235588999999999999763
No 246
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=39.96 E-value=9.1 Score=34.40 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=24.4
Q ss_pred CCcccCCCCCCCCCCCCccccccCccccCCCcc-cccCCccCcccccccc
Q 004423 135 KHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGR-LFVKGNYCPVCLKVYR 183 (754)
Q Consensus 135 ~C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~~-lf~KgnyCpVC~K~Y~ 183 (754)
.|+.|..|+......+...-+..+.++|..|.. +|.....|..|.+...
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 344466776654311111223345667777663 2322236888876543
No 247
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=39.61 E-value=15 Score=32.03 Aligned_cols=33 Identities=21% Similarity=0.578 Sum_probs=24.9
Q ss_pred cccccccccccccCCccCCCceEEeC--cCCCccchhccCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKN 71 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd--~C~rsYH~~CL~p 71 (754)
....|.+|...+. .-.|.|. .|.++||..|...
T Consensus 16 ~~l~C~iC~~~~~------GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 16 WKLTCYLCKQKGV------GASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCCBTTTTBCCS------SCEEECSCTTTCCEEEHHHHHH
T ss_pred hcCCCcCCCCCCC------cEeEecCCCCCCCcCcHHHHHH
Confidence 3468999986321 1788897 6999999999854
No 248
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=39.55 E-value=17 Score=31.88 Aligned_cols=38 Identities=3% Similarity=-0.099 Sum_probs=26.5
Q ss_pred CCCccccccccccccccCCccCCCceEEeCcCC-CccchhccCCCcc
Q 004423 29 GQSNTNVMCRLCFVGENEGCERARRMLSCKSCG-KKYHRNCLKNWAQ 74 (754)
Q Consensus 29 ~~s~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~-rsYH~~CL~p~~e 74 (754)
...+.+-.|.+|..-.. + -....|+ ..|-..|+..+..
T Consensus 17 ~~~p~~~~CpI~~~~m~-------d-PV~~~cG~htf~r~cI~~~l~ 55 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMC-------D-PVVLPSSRVTVDRSTIARHLL 55 (98)
T ss_dssp CSCCTTTBCTTTCSBCS-------S-EEECTTTCCEEEHHHHHHHTT
T ss_pred hcCcHhcCCcCcccccc-------C-CeECCCCCeEECHHHHHHHHH
Confidence 33345679999998652 1 2335788 9999999987654
No 249
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=39.17 E-value=7 Score=42.84 Aligned_cols=32 Identities=22% Similarity=0.821 Sum_probs=24.0
Q ss_pred cccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 35 ~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
..|.+|.... .-.....|++.||..|+..|..
T Consensus 333 ~~C~ICle~~--------~~pv~lpCGH~FC~~Ci~~wl~ 364 (389)
T 2y1n_A 333 QLCKICAEND--------KDVKIEPCGHLMCTSCLTSWQE 364 (389)
T ss_dssp SBCTTTSSSB--------CCEEEETTCCEECHHHHHHHHH
T ss_pred CCCCccCcCC--------CCeEEeCCCChhhHHHHHHHHh
Confidence 5899998754 2234468999999999976643
No 250
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=38.93 E-value=16 Score=28.10 Aligned_cols=32 Identities=25% Similarity=0.550 Sum_probs=23.2
Q ss_pred CCccCccccccccCCCCCCceeccCcCCeecccCCCC
Q 004423 171 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI 207 (754)
Q Consensus 171 KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~L 207 (754)
...||.+|.+... .-++|..|...+|..|...
T Consensus 13 ~pt~C~~C~~~l~-----qG~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 13 KLAFCDICQKFLL-----NGFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp SCEECTTSSSEEC-----SEEECTTTTCCBCSTTSSS
T ss_pred CCcCCCCcccccc-----cCCEeCCCCCeEChhHHhh
Confidence 3456666666542 3578999999999999763
No 251
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=38.57 E-value=39 Score=33.46 Aligned_cols=52 Identities=13% Similarity=0.335 Sum_probs=38.8
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEe-cCCcccceecCceeeEeeec
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITL-DDSRVKTLELGKQGVRFVPQ 747 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~-d~g~~~~~~~gk~~vr~~~~ 747 (754)
.+|.-+-+..+.||.||.|.|..+.... ++.|.| |=|..+++.+. .+|.||.
T Consensus 67 ~~G~~c~a~~~~d~~WyRa~V~~~~~~~-~~~V~~vDyGn~~~v~~~--~l~~l~~ 119 (226)
T 4b9x_A 67 EIGRPCCAFFSGDGNWYRALVKEILPSG-NVKVHFVDYGNVEEVTTD--QLQAILP 119 (226)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECSSS-EEEEECTTTCCEEEEEGG--GEECCCG
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCCC-eEEEEEEecCCEEEEEHH--HhccChH
Confidence 4688888888889999999999997553 266654 66888877653 4776664
No 252
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=38.36 E-value=38 Score=32.20 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=40.0
Q ss_pred cccccceEEEEecCCCceeeeeeEEeecCeeEEEEEe-cCCcccceecCceeeEeeec
Q 004423 691 KDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITL-DDSRVKTLELGKQGVRFVPQ 747 (754)
Q Consensus 691 ~da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~-d~g~~~~~~~gk~~vr~~~~ 747 (754)
.=.+|.-+-+..+.||.|+.++|..+..+. ++.|.| |=|..+++ ..+|.+|.
T Consensus 47 ~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~v----~~lr~l~~ 99 (169)
T 3ntk_A 47 DLKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAVT----QQFRQLPE 99 (169)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEEE----SCEECCCH
T ss_pred CCCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEEh----hhhhccCH
Confidence 345888888888889999999999998754 577777 44777763 57777764
No 253
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=38.13 E-value=3 Score=33.77 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=23.2
Q ss_pred ccccccccCCCCCceeCCCCC---CccccccCCCCCccCCCCCcccCCCc
Q 004423 91 ICEICRRTGDPNKFMFCRRCD---AAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~---raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
.|.+|....++.-+.-| .|. ++||..|+..=+. ..+.+.||.|.
T Consensus 8 ~CrIC~~~~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~--~~~~~~C~~C~ 54 (60)
T 1vyx_A 8 VCWICNEELGNERFRAC-GCTGELENVHRSCLSTWLT--ISRNTACQICG 54 (60)
T ss_dssp EETTTTEECSCCCCCSC-CCSSGGGSCCHHHHHHHHH--HHTCSBCTTTC
T ss_pred EeEEeecCCCCceecCc-CCCCchhhhHHHHHHHHHH--hCCCCccCCCC
Confidence 45555444333223333 454 4999999984221 12346677664
No 254
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=37.09 E-value=11 Score=31.93 Aligned_cols=38 Identities=8% Similarity=-0.094 Sum_probs=26.5
Q ss_pred CCCccccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 29 GQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 29 ~~s~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
.....+-.|.+|..-.. += ....||..|-..|+..+..
T Consensus 9 ~~~p~~~~CpI~~~~m~-------dP-V~~~cGhtf~r~~I~~~l~ 46 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMT-------DP-VRLPSGTVMDRSIILRHLL 46 (85)
T ss_dssp TTCCTTTBCTTTCSBCS-------SE-EECTTSCEEEHHHHHHHHH
T ss_pred hcCchheECcccCchhc-------CC-eECCCCCEECHHHHHHHHh
Confidence 33445679999998652 22 2345999999999987654
No 255
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=37.07 E-value=48 Score=28.01 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=32.8
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCccc
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVK 733 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~ 733 (754)
-+|--|-.++ +|+-.+-|+|+.|-.-+-+-.|+|.||...
T Consensus 15 ~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~ 54 (66)
T 2eqj_A 15 EEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKS 54 (66)
T ss_dssp CTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEE
T ss_pred cCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEE
Confidence 3677788899 999999999999975333399999999764
No 256
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=37.01 E-value=43 Score=32.22 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=28.7
Q ss_pred ccccceEEEEe--cCCC-ceeeeeeEEeecCeeEEEEEecC
Q 004423 692 DAIGKRVEVHQ--QSDN-SWHKGVVTDTVEGTSTLSITLDD 729 (754)
Q Consensus 692 da~~krvev~~--~sd~-~w~~g~v~~~~~~~~~~~v~~d~ 729 (754)
.++|+.|+|.. |.++ +..+|++..|-+++ +.|.+++
T Consensus 101 r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~~--v~l~~~~ 139 (164)
T 1ib8_A 101 GAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDE--LTMEYMD 139 (164)
T ss_dssp HHCSEEEEEECSSCSSSCSEEEEEEEEEETTE--EEEEEEC
T ss_pred HhCCcEEEEEEecccCCceEEEEEEEEEeCCE--EEEEEec
Confidence 47999999987 3344 78899999999888 7777765
No 257
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=36.18 E-value=17 Score=31.81 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=25.0
Q ss_pred ccCccccccccCCCCCCceeccCcCCeecccCCC
Q 004423 173 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 206 (754)
Q Consensus 173 nyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~ 206 (754)
.+|.+|.+.-.......-+.|.-|++.+|..|..
T Consensus 39 s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~ 72 (84)
T 1r79_A 39 AKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKE 72 (84)
T ss_dssp CBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHH
T ss_pred CEeCCCCCEeCCccCCCCCCCcccChhHHHHHHH
Confidence 3688888765444444557899999999999943
No 258
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.87 E-value=32 Score=29.52 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=25.4
Q ss_pred cCCccCccccccccCCCCCCceeccCcCCeecccCCCC
Q 004423 170 VKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI 207 (754)
Q Consensus 170 ~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~L 207 (754)
....||.+|.+..-. -..+-++|..|...+|..|...
T Consensus 26 ~~pt~C~~C~~~l~G-l~kqG~~C~~C~~~~Hk~C~~~ 62 (85)
T 2eli_A 26 GSPTFCDHCGSLLYG-LIHQGMKCDTCDMNVHKQCVIN 62 (85)
T ss_dssp SSCCBCSSSCCBCCC-SSSCEEECSSSCCEEETTTTTT
T ss_pred CCCcCCcccCccccc-cccCCCcCCCcCCccCHhHHhh
Confidence 344567777665421 1235688999999999999763
No 259
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=35.86 E-value=14 Score=32.91 Aligned_cols=34 Identities=15% Similarity=0.646 Sum_probs=24.9
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
.+..|.+|...-. +-+. ..|+..|+..|+..+..
T Consensus 17 ~~~~C~IC~~~~~-------~p~~-~~CgH~fC~~Ci~~~~~ 50 (118)
T 3hct_A 17 SKYECPICLMALR-------EAVQ-TPCGHRFCKACIIKSIR 50 (118)
T ss_dssp GGGBCTTTCSBCS-------SEEE-CTTSCEEEHHHHHHHHH
T ss_pred CCCCCCcCChhhc-------CeEE-CCcCChhhHHHHHHHHh
Confidence 4468999997542 2233 37999999999987654
No 260
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.83 E-value=42 Score=28.08 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=32.8
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCccc
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVK 733 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~ 733 (754)
-+|.-|-.|| +|+-.+=|+|..|-..+-.--|+|.|+...
T Consensus 9 ~eGqdVLarW-sDGlfYlgtV~kV~~~~~~ClV~FeD~s~~ 48 (63)
T 2e5q_A 9 TEGQYVLCRW-TDGLYYLGKIKRVSSSKQSCLVTFEDNSKY 48 (63)
T ss_dssp CTTCEEEEEC-TTSCEEEEEECCCCSTTSEEEEEETTSCEE
T ss_pred ecCCEEEEEe-cCCCEEEEEEEEEecCCCEEEEEEccCcee
Confidence 3677888999 999999999999976655577888888753
No 261
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=34.60 E-value=32 Score=34.64 Aligned_cols=45 Identities=33% Similarity=0.516 Sum_probs=34.8
Q ss_pred ccceEEEEecCCCceeeeeeEEe-ecCeeEEEEEecCCcccceecCceeeE
Q 004423 694 IGKRVEVHQQSDNSWHKGVVTDT-VEGTSTLSITLDDSRVKTLELGKQGVR 743 (754)
Q Consensus 694 ~~krvev~~~sd~~w~~g~v~~~-~~~~~~~~v~~d~g~~~~~~~gk~~vr 743 (754)
+|++|.|+.+. . ..|++..| -.|. |.|..+||..+++-.|-=.+|
T Consensus 188 ~g~~V~v~~~~--~-~~G~~~gId~~G~--L~v~~~~G~~~~~~~Gev~~~ 233 (235)
T 2dxu_A 188 LGVRVKILGDG--S-FEGIAEDIDDFGR--LIIRLDSGEVKKVIYGDVSLR 233 (235)
T ss_dssp CSSEEEC------C-CEEEEEEECTTSC--EEEECTTSCEEEECCSSCCCE
T ss_pred cCCeEEEEECC--e-EEEEEEEECCCCE--EEEEECCCCEEEEEeeEEEEe
Confidence 89999998743 3 89999999 5577 999999999998888865554
No 262
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=34.34 E-value=8.3 Score=31.74 Aligned_cols=32 Identities=16% Similarity=0.534 Sum_probs=22.5
Q ss_pred cccccccccccccCCccCCCceEEeCcCCCc-cchhccCCC
Q 004423 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKK-YHRNCLKNW 72 (754)
Q Consensus 33 ~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rs-YH~~CL~p~ 72 (754)
.+..|.+|..... +.+. ..|++. |+..|+..+
T Consensus 23 ~~~~C~iC~~~~~-------~~~~-~pCgH~~~C~~C~~~~ 55 (74)
T 4ic3_A 23 EEKLCKICMDRNI-------AIVF-VPCGHLVTCKQCAEAV 55 (74)
T ss_dssp HHTBCTTTSSSBC-------CEEE-ETTCCBCCCHHHHTTC
T ss_pred cCCCCCCCCCCCC-------CEEE-cCCCChhHHHHhhhcC
Confidence 3468999998542 2222 389999 999998753
No 263
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=34.21 E-value=14 Score=33.90 Aligned_cols=43 Identities=19% Similarity=0.610 Sum_probs=28.2
Q ss_pred cCccccccccCCCCCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 004423 174 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 232 (754)
Q Consensus 174 yCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~ 232 (754)
.|++|...+.+ +.+ -.|.+.||..|+. .|.. ....||.|+..-
T Consensus 55 ~C~iC~~~~~~----~~~--~~CgH~fc~~Ci~----~~~~------~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 55 QCIICSEYFIE----AVT--LNCAHSFCSYCIN----EWMK------RKIECPICRKDI 97 (138)
T ss_dssp BCTTTCSBCSS----EEE--ETTSCEEEHHHHH----HHTT------TCSBCTTTCCBC
T ss_pred CCcccCcccCC----ceE--CCCCCCccHHHHH----HHHH------cCCcCCCCCCcC
Confidence 49999876643 122 2589999999943 2211 246799999754
No 264
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=33.80 E-value=20 Score=27.19 Aligned_cols=35 Identities=20% Similarity=0.463 Sum_probs=24.4
Q ss_pred CCccCccccccccCCCCCCceeccCcCCeecccCCC
Q 004423 171 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 206 (754)
Q Consensus 171 KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~ 206 (754)
...+|.+|.+..-. -..+-++|..|...+|..|..
T Consensus 10 ~pt~C~~C~~~l~g-~~~qg~~C~~C~~~~H~~C~~ 44 (50)
T 1ptq_A 10 SPTFCDHCGSLLWG-LVKQGLKCEDCGMNVHHKCRE 44 (50)
T ss_dssp SCCBCTTTCCBCCS-SSSCEEEETTTCCEECHHHHT
T ss_pred CCCCcCCCCceeec-cCCccCEeCCCCCeECHHHhh
Confidence 44567777665421 123568899999999999965
No 265
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=33.47 E-value=18 Score=31.80 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=18.9
Q ss_pred CCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 109 RCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 109 ~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
.|+..|+..|+...+. .+...||.|.
T Consensus 32 ~CgH~fC~~Ci~~~~~---~~~~~CP~Cr 57 (115)
T 3l11_A 32 PCNHTLCKPCFQSTVE---KASLCCPFCR 57 (115)
T ss_dssp TTSCEECHHHHCCCCC---TTTSBCTTTC
T ss_pred CCCCHHhHHHHHHHHh---HCcCCCCCCC
Confidence 6899999999885442 3356788875
No 266
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.32 E-value=28 Score=29.58 Aligned_cols=37 Identities=22% Similarity=0.504 Sum_probs=25.7
Q ss_pred ccCCccCccccccccCCCCCCceeccCcCCeecccCCC
Q 004423 169 FVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 206 (754)
Q Consensus 169 f~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~ 206 (754)
|....||.+|.+..-. -...-++|..|...+|..|..
T Consensus 25 ~~~pt~C~~C~~~lwG-l~kqg~~C~~C~~~~Hk~C~~ 61 (83)
T 2yuu_A 25 FGQPTFCSVCKDFVWG-LNKQGYKCRQCNAAIHKKCID 61 (83)
T ss_dssp CSSCCCCSSSCCCCCS-SSCCEEEETTTCCEECTTGGG
T ss_pred CCCCcChhhcChhhcc-ccccccccCCcCCeeChhhhh
Confidence 3445667777765421 123568999999999999965
No 267
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=31.04 E-value=63 Score=29.98 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=30.1
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcc
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRV 732 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~ 732 (754)
.+|-||-... .++-.++|+|+.+ .-.....|+||||+.
T Consensus 7 ~vGq~V~akh-~ngryy~~~V~~~-~~~~~y~V~F~DgS~ 44 (118)
T 2qqr_A 7 TAGQKVISKH-KNGRFYQCEVVRL-TTETFYEVNFDDGSF 44 (118)
T ss_dssp CTTCEEEEEC-TTSSEEEEEEEEE-EEEEEEEEEETTSCE
T ss_pred ccCCEEEEEC-CCCCEEeEEEEEE-eeEEEEEEEcCCCCc
Confidence 5788988766 5788889999997 444568899999975
No 268
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.79 E-value=6 Score=31.05 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=17.6
Q ss_pred CCCCccccccCCCCCccCCCCCcccCCC
Q 004423 109 RCDAAYHCYCQHPPHKNVSSGPYLCPKH 136 (754)
Q Consensus 109 ~C~raYH~~CL~Ppl~~vp~g~W~CP~C 136 (754)
.|+..||..|+...+.. ......||.|
T Consensus 37 ~CgH~fC~~Ci~~~~~~-~~~~~~CP~C 63 (63)
T 2ysj_A 37 DCGHNFCLKCITQIGET-SCGFFKCPLC 63 (63)
T ss_dssp TTSSEECHHHHHHHHHH-CSSCCCCSCC
T ss_pred CCCCcchHHHHHHHHHc-CCCCCcCcCC
Confidence 78999999998743321 1235567765
No 269
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=29.72 E-value=24 Score=28.88 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=25.1
Q ss_pred CCccCccccccccCCCCCCceeccCcCCeecccCCC
Q 004423 171 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 206 (754)
Q Consensus 171 KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~ 206 (754)
+..+|.+|.+.+. .+...+.|..|....|..|-.
T Consensus 18 ~~~~C~~Cg~~i~--~gkq~~kC~dC~~~cH~~C~~ 51 (61)
T 4b6d_A 18 KPESCVPCGKRIK--FGKLSLKCRDCRVVSHPECRD 51 (61)
T ss_dssp SCEECTTTCCEEC--TTCEEEEESSSSCEECGGGGG
T ss_pred CCcccccccCEEE--EeeEeeECCCCCCeEchhHhh
Confidence 4456777766552 345678899999999999944
No 270
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=29.49 E-value=34 Score=28.65 Aligned_cols=32 Identities=19% Similarity=0.545 Sum_probs=23.1
Q ss_pred CCccCccccccccCCCCCCceeccCcCCeecccCCC
Q 004423 171 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 206 (754)
Q Consensus 171 KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~ 206 (754)
...||..|.... ...-++|..|...+|..|..
T Consensus 34 ~pt~C~~C~~~l----~~qG~kC~~C~~~cHkkC~~ 65 (72)
T 2fnf_X 34 GPGWCDLCGREV----LRQALRCANCKFTCHSECRS 65 (72)
T ss_dssp SCCBCTTTSSBC----SSCCEECTTSSCEECTGGGG
T ss_pred CCcchhhhhHHH----HhCcCccCCCCCeechhhhc
Confidence 345566666655 23458999999999999954
No 271
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=29.08 E-value=42 Score=31.55 Aligned_cols=31 Identities=35% Similarity=0.441 Sum_probs=26.2
Q ss_pred ccccceEEEEecCCCceeeeeeEEeecCeeEE
Q 004423 692 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTL 723 (754)
Q Consensus 692 da~~krvev~~~sd~~w~~g~v~~~~~~~~~~ 723 (754)
+-||-.|+|.+ .|++=.+|+|++|.+-.-+|
T Consensus 9 qFlGy~V~v~L-kDgs~~qG~I~~vd~k~LtL 39 (125)
T 4a53_A 9 DFYGSNVEVLL-NNDSKARGVITNFDSSNSIL 39 (125)
T ss_dssp HHTTCEEEEEE-TTSCEEEEEEEEEETTTTEE
T ss_pred HhcCceEEEEE-CCCCEeeEEEEeecCCeeEE
Confidence 45899999999 59999999999998766344
No 272
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=28.72 E-value=27 Score=25.31 Aligned_cols=18 Identities=28% Similarity=1.130 Sum_probs=12.5
Q ss_pred CCCccCCCCC--------cccccccc
Q 004423 81 WSSWKCPSCR--------ICEICRRT 98 (754)
Q Consensus 81 ~~~W~Cp~Ck--------~C~vC~~s 98 (754)
.++|.|+.|. .|..|+.+
T Consensus 4 ~gDW~C~~C~~~Nfa~R~~C~~C~~p 29 (33)
T 2k1p_A 4 ANDWQCKTCSNVNWARRSECNMCNTP 29 (33)
T ss_dssp SSSCBCSSSCCBCCTTCSBCSSSCCB
T ss_pred CCCcccCCCCCccccccccccccCCc
Confidence 3789999885 55555544
No 273
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=28.70 E-value=32 Score=32.95 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=6.6
Q ss_pred cccccccccccc
Q 004423 33 TNVMCRLCFVGE 44 (754)
Q Consensus 33 ~d~~C~vC~~gG 44 (754)
...+|..|....
T Consensus 57 ~~vlCg~C~~~q 68 (143)
T 2dkt_A 57 KEVQCINCEKLQ 68 (143)
T ss_dssp CCEEESSSCCEE
T ss_pred ceeeecccCccc
Confidence 345666666543
No 274
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=28.39 E-value=26 Score=28.49 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=12.0
Q ss_pred cccccccCCCCCceeCCCCCCccccccC
Q 004423 92 CEICRRTGDPNKFMFCRRCDAAYHCYCQ 119 (754)
Q Consensus 92 C~vC~~sgd~~kLL~Cd~C~raYH~~CL 119 (754)
|..|++.-.+..++.- -++.||..|.
T Consensus 3 C~~C~~~I~~~~~v~a--~~~~~H~~CF 28 (76)
T 1iml_A 3 CPKCDKEVYFAERVTS--LGKDWHRPCL 28 (76)
T ss_dssp CTTTSSBCCGGGEEEE--TTEEEETTTC
T ss_pred CCCCCCEEECceEEEE--CCccccCCCC
Confidence 5555655432233322 2566665443
No 275
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=28.02 E-value=28 Score=28.17 Aligned_cols=36 Identities=19% Similarity=0.465 Sum_probs=24.7
Q ss_pred cCCccCccccccccCCCCCCceeccCcCCeecccCCC
Q 004423 170 VKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 206 (754)
Q Consensus 170 ~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~ 206 (754)
....||.+|...... -...-++|..|...+|..|..
T Consensus 18 ~~pt~C~~C~~~l~G-l~~qg~~C~~C~~~~Hk~C~~ 53 (65)
T 3uej_A 18 MSPTFCDHCGSLLWG-LVKQGLKCEDCGMNVHHKCRE 53 (65)
T ss_dssp SSCCBCTTTCCBCCS-SSSCEEEETTTCCEECHHHHT
T ss_pred CCCCcccccChhhhc-cCceeeECCCCCCeEchhHhh
Confidence 344567777665321 123558899999999999965
No 276
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=27.73 E-value=25 Score=25.27 Aligned_cols=18 Identities=28% Similarity=0.827 Sum_probs=13.0
Q ss_pred CCccCCCCC--------ccccccccC
Q 004423 82 SSWKCPSCR--------ICEICRRTG 99 (754)
Q Consensus 82 ~~W~Cp~Ck--------~C~vC~~sg 99 (754)
++|.|+.|. .|+.|+.+.
T Consensus 4 gDW~C~~C~~~Nfa~r~~C~~C~~pr 29 (32)
T 2lk0_A 4 EDWLCNKCCLNNFRKRLKCFRCGADK 29 (32)
T ss_dssp SEEECTTTCCEEETTCCBCTTTCCBT
T ss_pred CCCCcCcCcCCcChhcceecCCCCcC
Confidence 789999985 666666543
No 277
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=27.68 E-value=70 Score=36.06 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=39.0
Q ss_pred cccceEEEEecCCCceeeeeeEEeecCeeEEEEEecC-CcccceecCceeeEeeec
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELGKQGVRFVPQ 747 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~-g~~~~~~~gk~~vr~~~~ 747 (754)
.+|.-+-+... |+.|+-++|..|... .++.|.|-| |..+++.+- .+|.||.
T Consensus 413 ~~G~~c~a~~~-d~~wyRa~I~~v~~~-~~~~V~fvDyGn~e~v~~~--~Lr~l~~ 464 (570)
T 3bdl_A 413 RRGEFCIAKFV-DGEWYRARVEKVESP-AKIHVFYIDYGNREVLPST--RLGTLSP 464 (570)
T ss_dssp CTTCEEEEECT-TSCEEEEEEEEEEET-TEEEEEETTTCCEEEECGG--GEECCCG
T ss_pred CcCCEEEEEEC-CCCEEEEEEEEEcCC-CeEEEEEEeCCCeEEEEHH--HCccCCH
Confidence 47888888886 999999999999872 237777655 988887653 4777764
No 278
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.45 E-value=50 Score=26.85 Aligned_cols=13 Identities=15% Similarity=0.526 Sum_probs=7.8
Q ss_pred CCCcccCCCCCCC
Q 004423 134 PKHTKCHSCGSNV 146 (754)
Q Consensus 134 P~C~~C~~Cg~~~ 146 (754)
+.|..|..|+...
T Consensus 39 ~~CF~C~~C~~~L 51 (80)
T 2cuq_A 39 RECLVCTGCQTPL 51 (80)
T ss_dssp TTTCBCSSSCCBC
T ss_pred hhhCCcccCCCcC
Confidence 3455577777654
No 279
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=27.44 E-value=31 Score=28.12 Aligned_cols=36 Identities=19% Similarity=0.434 Sum_probs=24.0
Q ss_pred cCCccCccccccccCCCCCCceeccCcCCeecccCCC
Q 004423 170 VKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 206 (754)
Q Consensus 170 ~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~ 206 (754)
....||.+|.+..-. -..+-++|..|...+|..|..
T Consensus 22 ~~pt~C~~C~~~l~G-l~~qg~~C~~C~~~~Hk~C~~ 57 (66)
T 1y8f_A 22 TTPTYCYECEGLLWG-IARQGMRCTECGVKCHEKCQD 57 (66)
T ss_dssp SSCCCCTTTCCCCCS-SCCEEEEETTTCCEECTTHHH
T ss_pred CCCcChhhcChhhcc-cCcceeEcCCCCCeeCHHHHh
Confidence 344567777665411 123457899999999999954
No 280
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.17 E-value=44 Score=27.35 Aligned_cols=13 Identities=15% Similarity=0.519 Sum_probs=8.1
Q ss_pred CCCcccCCCCCCC
Q 004423 134 PKHTKCHSCGSNV 146 (754)
Q Consensus 134 P~C~~C~~Cg~~~ 146 (754)
+.|..|..|+...
T Consensus 41 ~~CF~C~~C~~~L 53 (82)
T 1x63_A 41 KDCFTCSNCKQVI 53 (82)
T ss_dssp TTTCCCSSSCCCC
T ss_pred cccCchhhCCCcc
Confidence 4555577777654
No 281
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=27.17 E-value=24 Score=29.79 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=15.7
Q ss_pred CccccccccCCCCCCceeccCcCCeeccc
Q 004423 175 CPVCLKVYRDSESTPMVCCDVCQRWVHCQ 203 (754)
Q Consensus 175 CpVC~K~Y~Dsdgg~MLqCDsC~~wFH~e 203 (754)
||+|.....-......+.|..|..+|=..
T Consensus 11 CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (69)
T 2pk7_A 11 CPICKGPLKLSADKTELISKGAGLAYPIR 39 (69)
T ss_dssp CTTTCCCCEECTTSSEEEETTTTEEEEEE
T ss_pred CCCCCCcCeEeCCCCEEEcCCCCcEecCc
Confidence 66666554322233445677777666443
No 282
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=26.90 E-value=54 Score=31.38 Aligned_cols=32 Identities=28% Similarity=0.944 Sum_probs=14.6
Q ss_pred cCCCcccccCCccCccccccccCCCCCCceeccCcC
Q 004423 162 CDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQ 197 (754)
Q Consensus 162 C~~C~~lf~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~ 197 (754)
|..|...|.+. ||.+|. .|. ++.+...|+.|.
T Consensus 74 C~~Cg~~f~~Y-~C~~C~-l~d--~~k~~yHC~~Cg 105 (143)
T 2dkt_A 74 CEDCSTLFGEY-YCSICH-LFD--KDKRQYHCESCG 105 (143)
T ss_dssp CSSSCCBSCSE-ECSSSC-CEE--CSSSEEEETTTT
T ss_pred CCCCCccceee-Eeceee-ccc--CCCceecCCCCC
Confidence 44444444332 566663 232 234445555554
No 283
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=26.61 E-value=21 Score=30.05 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=15.6
Q ss_pred CccccccccCCCCCCceeccCcCCeeccc
Q 004423 175 CPVCLKVYRDSESTPMVCCDVCQRWVHCQ 203 (754)
Q Consensus 175 CpVC~K~Y~Dsdgg~MLqCDsC~~wFH~e 203 (754)
||+|.....-......+.|..|..+|=..
T Consensus 11 CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2hf1_A 11 CPLCKGPLVFDKSKDELICKGDRLAFPIK 39 (68)
T ss_dssp CTTTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred CCCCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 66666554322223445677777766443
No 284
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=26.25 E-value=28 Score=36.90 Aligned_cols=10 Identities=40% Similarity=1.145 Sum_probs=8.0
Q ss_pred ceeCCCCCCC
Q 004423 222 QYRCPTCRGE 231 (754)
Q Consensus 222 ~Y~CptCr~~ 231 (754)
.+.|..|..-
T Consensus 253 ~e~C~~C~~Y 262 (309)
T 2fiy_A 253 AETCPSCQGY 262 (309)
T ss_dssp EEEETTTTEE
T ss_pred EEEcccccch
Confidence 6889999754
No 285
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.22 E-value=42 Score=25.92 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=14.3
Q ss_pred CCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 109 RCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 109 ~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
.|+..|+..|+.. ....||.|+
T Consensus 23 ~CgH~fC~~Ci~~-------~~~~CP~Cr 44 (56)
T 1bor_A 23 PCLHTLCSGCLEA-------SGMQCPICQ 44 (56)
T ss_dssp TTSCCSBTTTCSS-------SSSSCSSCC
T ss_pred CCCCcccHHHHcc-------CCCCCCcCC
Confidence 4777777777764 245677765
No 286
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=26.10 E-value=22 Score=29.93 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=14.9
Q ss_pred CccccccccCCCCCCceeccCcCCeeccc
Q 004423 175 CPVCLKVYRDSESTPMVCCDVCQRWVHCQ 203 (754)
Q Consensus 175 CpVC~K~Y~Dsdgg~MLqCDsC~~wFH~e 203 (754)
||+|.....-......+.|..|..+|=..
T Consensus 11 CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2jr6_A 11 CPVTKGRLEYHQDKQELWSRQAKLAYPIK 39 (68)
T ss_dssp CSSSCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred CCCCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 56665544322223345576776666443
No 287
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=26.06 E-value=37 Score=28.56 Aligned_cols=37 Identities=22% Similarity=0.529 Sum_probs=25.7
Q ss_pred ccCCccCccccccccCCCCCCceeccCcCCeecccCCC
Q 004423 169 FVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 206 (754)
Q Consensus 169 f~KgnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~ 206 (754)
|....||.+|.+..-. -..+-++|..|...+|..|..
T Consensus 31 f~~pt~C~~C~~~lwG-l~kqG~~C~~C~~~~Hk~C~~ 67 (77)
T 2enn_A 31 FPQPTFCSVCHEFVWG-LNKQGYQCRQCNAAIHKKCID 67 (77)
T ss_dssp CSSCEECSSSCCEECC-TTCCEEECSSSCCEEESGGGS
T ss_pred CCCCcCccccChhhcc-ccccccCcCCCCCcCCHhHHh
Confidence 3445567777765421 123558899999999999966
No 288
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=25.69 E-value=63 Score=27.19 Aligned_cols=43 Identities=21% Similarity=0.553 Sum_probs=23.6
Q ss_pred CCCceeccCcCCeecccCCCCChHHHhhhccCCCCceeCCCCCCCCC
Q 004423 187 STPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECY 233 (754)
Q Consensus 187 gg~MLqCDsC~~wFH~eCd~LsdE~ye~~~~d~d~~Y~CptCr~~~~ 233 (754)
+...+.|..|+..|-..-. +. .-... -.+...|.|+.|.....
T Consensus 63 ~~~~~~C~~C~~~f~~~~~-l~--~H~~~-h~~~~~~~C~~C~~~f~ 105 (124)
T 2dlq_A 63 SEQVFTCSVCQETFRRRME-LR--LHMVS-HTGEMPYKCSSCSQQFM 105 (124)
T ss_dssp CCCCEECSSSCCEESSHHH-HH--HHHHH-HSSSCSEECSSSCCEES
T ss_pred CCCCeECCCCCCccCCHHH-HH--HHHHH-cCCCCCccCCCccchhC
Confidence 3445789999988743310 00 00011 12345799999976543
No 289
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=25.54 E-value=26 Score=34.64 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=25.0
Q ss_pred ccccccccccccccCCccCCCceEEeCcCCCccchhccCCCcc
Q 004423 32 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (754)
Q Consensus 32 ~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e 74 (754)
+..-.|.+|..... += ....||..|...|+..+..
T Consensus 206 ~~~~~c~i~~~~~~-------dP-v~~~~gh~f~~~~i~~~~~ 240 (281)
T 2c2l_A 206 PDYLCGKISFELMR-------EP-CITPSGITYDRKDIEEHLQ 240 (281)
T ss_dssp CSTTBCTTTCSBCS-------SE-EECSSCCEEETTHHHHHHH
T ss_pred CcccCCcCcCCHhc-------CC-eECCCCCEECHHHHHHHHH
Confidence 34568999998652 11 3356999999999987654
No 290
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.11 E-value=39 Score=28.47 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=12.2
Q ss_pred ccccccccCCCCCceeCCCCCCccccccC
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQ 119 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~CL 119 (754)
.|..|+..-.+..++ ..-++.||..|.
T Consensus 17 ~C~~C~~~I~~~~~v--~a~~~~~H~~CF 43 (91)
T 2d8y_A 17 TCVECQKTVYPMERL--LANQQVFHISCF 43 (91)
T ss_dssp BCTTTCCBCCTTSEE--ECSSSEEETTTC
T ss_pred cCccCCCccCCceeE--EECCCEECCCCC
Confidence 344455544332333 234556665443
No 291
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=25.06 E-value=28 Score=31.62 Aligned_cols=10 Identities=40% Similarity=0.879 Sum_probs=5.4
Q ss_pred CcccCCCCCC
Q 004423 136 HTKCHSCGSN 145 (754)
Q Consensus 136 C~~C~~Cg~~ 145 (754)
|+.|..|+..
T Consensus 88 CF~C~~C~~~ 97 (123)
T 2l4z_A 88 CLKCSSCQAQ 97 (123)
T ss_dssp TSBCTTTCCB
T ss_pred ccCcCcCCCc
Confidence 3446666654
No 292
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=24.78 E-value=22 Score=30.06 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=15.7
Q ss_pred CccccccccCCCCCCceeccCcCCeeccc
Q 004423 175 CPVCLKVYRDSESTPMVCCDVCQRWVHCQ 203 (754)
Q Consensus 175 CpVC~K~Y~Dsdgg~MLqCDsC~~wFH~e 203 (754)
||+|.....-......+.|..|..+|=..
T Consensus 11 CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 11 CPVCKGRLEFQRAQAELVCNADRLAFPVR 39 (70)
T ss_dssp CTTTCCBEEEETTTTEEEETTTTEEEEEE
T ss_pred CCCCCCcCEEeCCCCEEEcCCCCceecCC
Confidence 66666554322223445677777766444
No 293
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=24.63 E-value=28 Score=30.46 Aligned_cols=19 Identities=37% Similarity=1.018 Sum_probs=0.0
Q ss_pred CCCccCCCCC--------ccccccccC
Q 004423 81 WSSWKCPSCR--------ICEICRRTG 99 (754)
Q Consensus 81 ~~~W~Cp~Ck--------~C~vC~~sg 99 (754)
.+.|.|+.|. .|..|+.+.
T Consensus 6 ~g~W~C~~C~~~N~~~~~~C~~C~~pk 32 (92)
T 3gj8_B 6 VGSWECPVCCVSNKAEDSRCVSCTSEK 32 (92)
T ss_dssp ---------------------------
T ss_pred CcCCCCCcCCCEeccccceecccCCCC
Confidence 3789999986 677776543
No 294
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=24.61 E-value=99 Score=27.26 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=32.6
Q ss_pred hhhhHHHHHHhccccccceEEEEecCCCceeeeeeEEee--cCeeEEEEEecCCcccc
Q 004423 679 IMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTV--EGTSTLSITLDDSRVKT 734 (754)
Q Consensus 679 ~~d~~~il~~lg~da~~krvev~~~sd~~w~~g~v~~~~--~~~~~~~v~~d~g~~~~ 734 (754)
+|++.| ||+-|-|+--+|---+||.|++|- ++|=+|.=-|-||-..+
T Consensus 2 ~Ma~~~---------iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f~NG~~~~ 50 (84)
T 2vc8_A 2 AMATDW---------LGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCL 50 (84)
T ss_dssp ---CTT---------TTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEEETTEECS
T ss_pred cccccc---------cCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhhhCCCCCC
Confidence 466666 699999999777779999999997 55544444466665433
No 295
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=23.82 E-value=1e+02 Score=28.87 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=30.2
Q ss_pred cccceEEEEecCCCceeeeeeEEeec----CeeEEEEEec
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDTVE----GTSTLSITLD 728 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~~~----~~~~~~v~~d 728 (754)
.||.+|.|... |+.||...|..|.. |.-.+.|-|.
T Consensus 14 ~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~ 52 (133)
T 1wgs_A 14 EIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYV 52 (133)
T ss_dssp CTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECT
T ss_pred CCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEecc
Confidence 58999999995 89999999999863 6778889876
No 296
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=23.53 E-value=46 Score=33.34 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=35.0
Q ss_pred ccceEEEEecCCCceeeeeeEEe-ecCeeEEEEEecCCcccceecCceeeE
Q 004423 694 IGKRVEVHQQSDNSWHKGVVTDT-VEGTSTLSITLDDSRVKTLELGKQGVR 743 (754)
Q Consensus 694 ~~krvev~~~sd~~w~~g~v~~~-~~~~~~~~v~~d~g~~~~~~~gk~~vr 743 (754)
+|++|.|+.+ +. ..|++..| -.|. |.|..+||. +++-.|-=.+|
T Consensus 187 ~g~~V~v~~~--~~-~~G~~~gId~~G~--L~v~~~~G~-~~~~~Gev~~r 231 (233)
T 2eay_A 187 LGEEVKLLGE--GK-ITGKLVGLSEKGG--ALILTEEGI-KEILSGEFSLR 231 (233)
T ss_dssp TTSEEEETTE--EE-EEEEEEEECTTSC--EEEEETTEE-EEECSCCEEEC
T ss_pred cCCEEEEEEC--Ce-EEEEEEEECCCCe--EEEEECCCe-EEEEEeEEEEe
Confidence 7999999864 33 89999999 5577 999999998 88877754443
No 297
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=23.53 E-value=8.8 Score=34.32 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=18.4
Q ss_pred CCCCccccccCCCCCccCCCCCcccCCCcc
Q 004423 109 RCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (754)
Q Consensus 109 ~C~raYH~~CL~Ppl~~vp~g~W~CP~C~~ 138 (754)
.|+..||..|+...+. .....||.|..
T Consensus 69 ~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~ 95 (124)
T 3fl2_A 69 VCQHNVCKDCLDRSFR---AQVFSCPACRY 95 (124)
T ss_dssp TTSCEEEHHHHHHHHH---TTCCBCTTTCC
T ss_pred eCCCcccHHHHHHHHh---HCcCCCCCCCc
Confidence 7888899999864322 34457888763
No 298
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=23.40 E-value=43 Score=35.06 Aligned_cols=48 Identities=19% Similarity=0.582 Sum_probs=34.5
Q ss_pred CccccccccccccccCCccCCCceEEeCcCCCccchhccCCCccccccCCCCCccCCC--CC
Q 004423 31 SNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPS--CR 90 (754)
Q Consensus 31 s~~d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p~~e~~~~v~~~~W~Cp~--Ck 90 (754)
...+..|.+|..... +=+....||+.|-..|+..+... .+.|.||. |+
T Consensus 178 ~~~el~CPIcl~~f~-------DPVts~~CGHsFcR~cI~~~~~~-----~~~~~CPvtGCr 227 (267)
T 3htk_C 178 GKIELTCPITCKPYE-------APLISRKCNHVFDRDGIQNYLQG-----YTTRDCPQAACS 227 (267)
T ss_dssp SBCCSBCTTTSSBCS-------SEEEESSSCCEEEHHHHHHHSTT-----CSCEECSGGGCS
T ss_pred CceeeECcCccCccc-------CCeeeCCCCCcccHHHHHHHHHh-----CCCCCCCccccc
Confidence 445679999998652 44556689999999999765432 14588888 75
No 299
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.32 E-value=48 Score=26.84 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=11.7
Q ss_pred ccccccccCCCCCceeCCCCCCcccccc
Q 004423 91 ICEICRRTGDPNKFMFCRRCDAAYHCYC 118 (754)
Q Consensus 91 ~C~vC~~sgd~~kLL~Cd~C~raYH~~C 118 (754)
.|..|+++-.+..++. .-++.||..|
T Consensus 11 ~C~~C~~~I~~~~~v~--a~~~~~H~~C 36 (76)
T 2cu8_A 11 KCPKCDKTVYFAEKVS--SLGKDWHKFC 36 (76)
T ss_dssp BCTTTCCBCCTTTEEE--ETTEEEETTT
T ss_pred CCcCCCCEeECCeEEE--ECCeEeeCCC
Confidence 3444555443333332 2355666544
No 300
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=23.20 E-value=26 Score=29.40 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=15.0
Q ss_pred CccccccccCCCCCCceeccCcCCeeccc
Q 004423 175 CPVCLKVYRDSESTPMVCCDVCQRWVHCQ 203 (754)
Q Consensus 175 CpVC~K~Y~Dsdgg~MLqCDsC~~wFH~e 203 (754)
||+|............+.|..|..+|=..
T Consensus 13 CP~ck~~L~~~~~~g~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 13 CPKDKGPLRYLESEQLLVNERLNLAYRID 41 (67)
T ss_dssp CTTTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred CCCCCCcCeEeCCCCEEEcCCCCccccCC
Confidence 56666544322223345577777766433
No 301
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=23.09 E-value=21 Score=31.89 Aligned_cols=37 Identities=19% Similarity=0.438 Sum_probs=23.3
Q ss_pred ccccccccccccCCccCCCceEEeCcCCCccchhccCC
Q 004423 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKN 71 (754)
Q Consensus 34 d~~C~vC~~gG~~gs~~~eeLL~Cd~C~rsYH~~CL~p 71 (754)
..+|++|+..- +-....+-++.|..|.-.....|+..
T Consensus 16 ~qiCqiCGD~V-G~~~~Ge~FVAC~eC~FPvCrpCyEY 52 (93)
T 1weo_A 16 GQFCEICGDQI-GLTVEGDLFVACNECGFPACRPCYEY 52 (93)
T ss_dssp SCBCSSSCCBC-CBCSSSSBCCSCSSSCCCCCHHHHHH
T ss_pred CCccccccCcc-ccCCCCCEEEeeeccCChhhHHHHHH
Confidence 36999999742 11233446777877776666666654
No 302
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=22.53 E-value=59 Score=26.24 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=7.3
Q ss_pred CCCcccCCCCCCC
Q 004423 134 PKHTKCHSCGSNV 146 (754)
Q Consensus 134 P~C~~C~~Cg~~~ 146 (754)
+.|..|..|+...
T Consensus 44 ~~CF~C~~C~~~L 56 (77)
T 2egq_A 44 DYCFHCKKCSVNL 56 (77)
T ss_dssp TTTCBCSSSCCBC
T ss_pred cccCEehhcCCCC
Confidence 3455566676544
No 303
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.38 E-value=65 Score=28.39 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=15.0
Q ss_pred CCcccCCCCCCCCCCCCccccccCccccCCCc
Q 004423 135 KHTKCHSCGSNVPGNGLSVRWFLGYTCCDACG 166 (754)
Q Consensus 135 ~C~~C~~Cg~~~pgk~~s~RW~~~~slC~~C~ 166 (754)
.|+.|..|+......+...-+..+.++|..|.
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y 60 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDY 60 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHH
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHH
Confidence 44457777765432111222233456666554
No 304
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.33 E-value=1.5e+02 Score=26.04 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=40.0
Q ss_pred ccceEEEEecCCCceeeeeeEEeecCeeEEEEE-ecCCcccceecCceeeEeee
Q 004423 694 IGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSIT-LDDSRVKTLELGKQGVRFVP 746 (754)
Q Consensus 694 ~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~-~d~g~~~~~~~gk~~vr~~~ 746 (754)
.|.=|-+.-+-||.|+.|.|..|+..+. +-|- +|=|.++++-... +|=|+
T Consensus 24 ~g~~vaak~~d~n~WyRakV~~v~~~~~-veVl~~DyGn~~~V~~~~--LR~L~ 74 (85)
T 2eqk_A 24 NDMHCAVKIQDKNQWRRGQIIRMVTDTL-VEVLLYDVGVELVVNVDC--LRKLE 74 (85)
T ss_dssp SSCEEEEECSSSCCEEEEEEEEECSSSE-EEEECTTTCCEEEEETTT--EEECC
T ss_pred CCCEEEEEeCCCCeEEEEEEEEecCCCe-EEEEEEccCCEEEEEccc--cccCC
Confidence 5777788888888999999999999876 6655 5779999998774 66664
No 305
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=22.32 E-value=18 Score=42.81 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=9.1
Q ss_pred HHHHHHHHhcCCC
Q 004423 255 DLIASLRAAAGLP 267 (754)
Q Consensus 255 dvI~slRaa~GLp 267 (754)
+.++.+|+.++=|
T Consensus 234 ~aV~~lr~~K~Rp 246 (772)
T 4g9i_A 234 EVVAELRRRTFRP 246 (772)
T ss_dssp HHHHHHHHHTTCS
T ss_pred HHHHHHHHhhCCC
Confidence 6677777777665
No 306
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=21.69 E-value=85 Score=33.03 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=34.5
Q ss_pred cccceEEEEecCCCceeeeeeEEe-ecCeeEEEEEecCCcccceecCc
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDT-VEGTSTLSITLDDSRVKTLELGK 739 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~-~~~~~~~~v~~d~g~~~~~~~gk 739 (754)
-+|++|.|..+ +....|++..| -.|. |.|..+||..+++-.|-
T Consensus 277 ~~g~~V~v~~~--~~~~~G~~~gId~~G~--Llv~~~~G~~~~~~sGe 320 (323)
T 3rkx_A 277 IWNRTLLFTEN--DKQFKGQAIDLDYDGY--LIVRDEAGESHRLISAD 320 (323)
T ss_dssp CSSSCEEEECC---CEEEEEEEEECTTSC--EEEEETTSCEEEESSCE
T ss_pred hcCCEEEEEEC--CeEEEEEEEEECCCCE--EEEEECCCCEEEEEEee
Confidence 57999999863 44678999999 4577 99999999988876663
No 307
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=21.46 E-value=52 Score=25.76 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=16.4
Q ss_pred eeCCCCCCccccccCCCCCccCCCCCcccCCCc
Q 004423 105 MFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 137 (754)
Q Consensus 105 L~Cd~C~raYH~~CL~Ppl~~vp~g~W~CP~C~ 137 (754)
-.|..|+-.|...=-.|.........|.||.|.
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg 37 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCG 37 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGSCTTCBCTTTC
T ss_pred EECCCCCeEEeCCcCCCcchhhCCCCCcCcCCC
Confidence 356666666653222211111223569999874
No 308
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=21.43 E-value=1.8e+02 Score=24.62 Aligned_cols=46 Identities=15% Similarity=0.047 Sum_probs=39.1
Q ss_pred ccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccceec
Q 004423 692 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLEL 737 (754)
Q Consensus 692 da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~~~ 737 (754)
=++|-.|--.||-|+..+.+.|+.+-+..--..|.|-||-.+||.-
T Consensus 10 ~~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e~L~~ 55 (66)
T 2l8d_A 10 YADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTELALKE 55 (66)
T ss_dssp SCSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEEEEEG
T ss_pred eecCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEEeech
Confidence 3678899999999999999999999866666789999988777754
No 309
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=21.28 E-value=22 Score=42.14 Aligned_cols=10 Identities=40% Similarity=1.085 Sum_probs=5.1
Q ss_pred CccccccccC
Q 004423 175 CPVCLKVYRD 184 (754)
Q Consensus 175 CpVC~K~Y~D 184 (754)
|+-|.+-|.+
T Consensus 164 C~~C~~EY~d 173 (761)
T 3vth_A 164 CEKCSREYHD 173 (761)
T ss_dssp CHHHHHHHTC
T ss_pred CHHHHHHhcC
Confidence 5555555543
No 310
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=20.85 E-value=1.7e+02 Score=24.88 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=43.4
Q ss_pred ccccceEEEEecCCCceeeeeeEEeecCeeEEEEEecCCcccceecCceeeEeeec
Q 004423 692 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQ 747 (754)
Q Consensus 692 da~~krvev~~~sd~~w~~g~v~~~~~~~~~~~v~~d~g~~~~~~~gk~~vr~~~~ 747 (754)
=++|-.|--.|+-|+..+.+.|+.+-+..=-..|.|-||-.++|.- +-||-||.
T Consensus 13 f~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e~L~~--kDIKp~~~ 66 (68)
T 2dig_A 13 FADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTELELKE--NDIKSGPS 66 (68)
T ss_dssp SCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEEEEET--TTEECCCC
T ss_pred eecCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEEEech--hccccCCC
Confidence 3688899999999999999999999866666789999987776654 45666663
No 311
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=20.66 E-value=1.4e+02 Score=24.61 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=28.4
Q ss_pred cccceEEEEecCCCceeeeeeEEe--ecCeeEEEEEecCCc
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDT--VEGTSTLSITLDDSR 731 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~--~~~~~~~~v~~d~g~ 731 (754)
.+|-|+|+--. .|.|+-.+|+.| .++. |-|.||+=.
T Consensus 14 ~vGmkLEa~d~-~~p~~~AtV~~v~~~~~~--~~VhfdGw~ 51 (69)
T 3sd4_A 14 EVGAQLEARDR-LKNWYPAHIEDIDYEEGK--VLIHFKRWN 51 (69)
T ss_dssp STTCEEEEECT-TSCEEEEEEEEEETTTTE--EEEEETTSC
T ss_pred CCCCEEEEEEC-CCCccccEEEEEeccCCE--EEEEeCCCC
Confidence 58999999864 455799999998 5555 999998644
No 312
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=20.50 E-value=83 Score=31.33 Aligned_cols=37 Identities=8% Similarity=0.135 Sum_probs=30.5
Q ss_pred cccceEEEEecCCCceeeeeeEEe-ecCeeEEEEEecCCcccceecC
Q 004423 693 AIGKRVEVHQQSDNSWHKGVVTDT-VEGTSTLSITLDDSRVKTLELG 738 (754)
Q Consensus 693 a~~krvev~~~sd~~w~~g~v~~~-~~~~~~~~v~~d~g~~~~~~~g 738 (754)
-+|++|.| ++ ..|++..| -.|. |.|..+||. +++-.|
T Consensus 192 ~~g~~V~v----~~--~~G~~~gId~~G~--L~v~~~~G~-~~i~~G 229 (235)
T 3bfm_A 192 GMGEARTE----AG--RSGTFLGVDEDFG--MLLRDETTT-HLIPLT 229 (235)
T ss_dssp TTTSEEEE----TT--EEEEEEEECTTCC--EEEECSSCE-EEECGG
T ss_pred hcCCEEEE----Ee--EEEEEEEECCCCe--EEEEeCCCe-EEEEee
Confidence 47999999 34 89999999 5677 999999997 777665
No 313
>2q1f_A Chondroitinase; alpha plus beta, lyase; 2.85A {Bacteroides thetaiotaomicron}
Probab=20.22 E-value=60 Score=39.71 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=33.7
Q ss_pred EEEEecCCCce-----eeeeeEEeecCeeEEEEEecCCcccceecCc
Q 004423 698 VEVHQQSDNSW-----HKGVVTDTVEGTSTLSITLDDSRVKTLELGK 739 (754)
Q Consensus 698 vev~~~sd~~w-----~~g~v~~~~~~~~~~~v~~d~g~~~~~~~gk 739 (754)
+.|...-++.| -.|+++....++++|.|++.+|...+++|-|
T Consensus 968 ~~~~vtl~G~w~~~~~~~~v~v~~~~~~T~l~v~~~~G~~~~~~l~~ 1014 (1022)
T 2q1f_A 968 IPVTVTLKGRWKVVETPYCKVVSEDKKQTVLRFLCKDGASYEVELEK 1014 (1022)
T ss_dssp EEEEEEEESCCEECCBTTEEEEEECSSEEEEEEEECTTCEEEEEEEC
T ss_pred eeEEEEECcEEecccCCCceEEEEcCCcEEEEEEeCCCeEEEEEEEe
Confidence 34445557888 3477888899999999999999999999865
No 314
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=20.12 E-value=36 Score=27.28 Aligned_cols=31 Identities=19% Similarity=0.575 Sum_probs=21.9
Q ss_pred CccCccccccccCCCCCCceeccCcCCeecccCCC
Q 004423 172 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 206 (754)
Q Consensus 172 gnyCpVC~K~Y~Dsdgg~MLqCDsC~~wFH~eCd~ 206 (754)
..||..|.... ....++|..|...+|..|..
T Consensus 22 pt~C~~C~~~i----~kqg~kC~~C~~~cH~kC~~ 52 (59)
T 1rfh_A 22 PGWCDLCGREV----LRQALRCANCKFTCHSECRS 52 (59)
T ss_dssp CEECTTTCSEE----CSCCEECTTTSCEECHHHHT
T ss_pred CeEchhcchhh----hhCccEeCCCCCeEehhhhh
Confidence 34555665544 23458999999999999955
Done!