Query 004424
Match_columns 754
No_of_seqs 156 out of 1086
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 23:12:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 4E-194 8E-199 1586.5 48.0 739 3-754 22-761 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 1E-178 3E-183 1535.0 55.5 676 30-721 1-679 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 2E-127 5E-132 1128.0 54.5 640 36-718 1-654 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 2E-119 5E-124 1058.1 40.7 613 52-716 1-624 (624)
5 TIGR00733 putative oligopeptid 100.0 3.1E-65 6.7E-70 587.5 39.9 548 52-714 1-588 (591)
6 COG1297 Predicted membrane pro 100.0 9.6E-50 2.1E-54 438.8 28.9 567 48-721 10-619 (624)
7 PF03169 OPT: OPT oligopeptide 91.4 5.6 0.00012 47.7 16.9 207 51-312 352-589 (624)
8 COG0628 yhhT Predicted permeas 61.4 57 0.0012 36.1 10.5 160 389-564 167-331 (355)
9 TIGR00733 putative oligopeptid 49.1 5.5E+02 0.012 30.9 18.2 108 459-567 2-117 (591)
10 PRK10983 putative inner membra 43.4 5.2E+02 0.011 29.0 15.7 44 520-563 287-334 (368)
11 PF01594 UPF0118: Domain of un 41.2 3.8E+02 0.0082 28.9 12.8 55 511-565 259-318 (327)
12 TIGR02872 spore_ytvI sporulati 39.6 2.1E+02 0.0045 31.0 10.5 40 524-563 286-329 (341)
13 TIGR00728 OPT_sfam oligopeptid 38.9 1E+02 0.0022 37.4 8.5 22 289-310 588-613 (654)
14 PRK12287 tqsA pheromone autoin 38.4 3.1E+02 0.0067 30.3 11.6 48 516-563 266-318 (344)
15 TIGR00927 2A1904 K+-dependent 29.9 1.5E+02 0.0033 37.2 7.8 37 88-142 944-980 (1096)
16 TIGR00727 ISP4_OPT small oligo 29.8 9.2E+02 0.02 29.6 14.3 25 429-453 420-444 (681)
17 TIGR02106 cyd_oper_ybgT cyd op 29.6 70 0.0015 22.7 2.9 18 57-74 5-22 (30)
18 PF09512 ThiW: Thiamine-precur 29.2 2.1E+02 0.0044 28.1 7.1 27 542-568 90-117 (150)
19 PF08173 YbgT_YccB: Membrane b 27.0 84 0.0018 21.9 2.9 18 57-74 5-22 (28)
20 PRK14749 hypothetical protein; 26.4 88 0.0019 22.0 2.9 18 57-74 5-22 (30)
21 PF03606 DcuC: C4-dicarboxylat 25.9 2.4E+02 0.0053 32.7 8.4 91 430-532 251-342 (465)
22 COG5438 Predicted multitransme 22.3 4.5E+02 0.0097 29.6 9.0 81 543-640 255-335 (385)
23 PF12014 DUF3506: Domain of un 21.6 45 0.00097 31.9 1.1 28 31-58 57-86 (134)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-194 Score=1586.52 Aligned_cols=739 Identities=60% Similarity=1.131 Sum_probs=709.6
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCchhhhhccCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccccccc
Q 004424 3 SFDEDGVTKTKALEKHQTDIDVNGGEEVNDNPIEEVRLTVPITDDPSQPVLTFRTWILGITSCGLLAFVNQFFGYRQNQL 82 (754)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~evr~~v~~~Ddp~~p~lT~Ra~~lG~~l~~i~~~~n~~f~lr~~~~ 82 (754)
+.|+++..|.+++++...|.++ ++|++|||||||||+.||+||||++|++|||+|++|++.+++++++||+|++|.+++
T Consensus 22 ~~~~~~~~~~~~d~~~~~~~e~-~~ed~~~spv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~l 100 (761)
T KOG2262|consen 22 ELTSSDSEKIVDDSKIVIDDEN-ELEDEEDSPVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPL 100 (761)
T ss_pred cCccccchhhhcccceeccccc-cccccccCcchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCe
Confidence 3444444444444444443222 367889999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHhcCCCccccCCcccccccCCCCCCccchhheeecccccccchhhhHHHHHHHHHhcCCCC
Q 004424 83 SVGSVSAQILVLPIGKLMAATLPTKQMRVPFTKWSFSLNPGPFNLKEHVLITIFAGCGASGVYAVNIITIVKAFYNRSLH 162 (754)
Q Consensus 83 ~~~s~~~~ll~~~ig~~~a~~lP~~~~~~~g~~~~~~lNPgpf~~kE~~~i~~~Asaa~~~~~a~~~i~~~~~~y~~~~~ 162 (754)
+++.+++|+++||+||+|+|+||+|++++ ++||+|+|||||||.|||++++++|+++++.+|+++++.+|++||+++++
T Consensus 101 sis~i~aQi~~~PlGklma~~lP~~~~~~-~~~~~fslNPGPFn~KEHvlitIfan~~sg~aYat~Ii~~~k~fY~~~l~ 179 (761)
T KOG2262|consen 101 SISAIVAQIATYPLGKLMAKTLPTWKFGL-GGRWSFSLNPGPFNVKEHVLITIFANIGSGTAYATHIITAQKAFYKRNLS 179 (761)
T ss_pred ehHHHHHHHHHHhHHHHHHHhCCceeeec-CcceEEEeCCCCCcchheeeeehhhhccCcchhhhHHHHHHHHHHhcccc
Confidence 99999999999999999999999999876 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHhhccccccccCCCcCcchHHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhHhhcccc
Q 004424 163 PVAAMLLVQTTQLLGYGWAGIFRKYLVDSPYMWWPSNLVQVSLFRALHEKERRPKGGLTRLQFFLLVFVSSFGYYIIPGY 242 (754)
Q Consensus 163 ~~~~il~~ls~q~lG~~~Ag~lR~~lV~p~~l~~Ps~lata~l~~sLh~~~~~~~~~~sr~k~f~~~f~~~fv~~~~P~y 242 (754)
+++++++.++||++|||+||++||++|+|.+|.||++|++++|+|+||+++++.+..++|+|||+++|.+||+|+|+|+|
T Consensus 180 f~~~~ll~lttQ~lGyGwAGl~Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgy 259 (761)
T KOG2262|consen 180 FGYAFLLVLTTQLLGYGWAGLFRKYLVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGY 259 (761)
T ss_pred HHHHHHHHHHHHHhcccHhhhhHhhccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999887666699999999999999999999999
Q ss_pred hhhhcccccceehhccCCcceeeccccccCCCcccccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 004424 243 LFPSLSALSFVCLIWKDSITAQKLGSGQHGLGIGSFGLDWSTVAGFLGSPLATPFFAIANILAGYFLFLYVLVPIAYWSN 322 (754)
Q Consensus 243 i~p~L~~~~~~~wi~p~~~~~~~i~Gg~~GlGl~~~tfDws~i~a~~gspl~~p~~~~~~~~~G~vl~~~ii~P~ly~~n 322 (754)
+||+|+.++|.||+.|+|.+++||+||.+|||++|+||||++|++|+|||+.+|+++.+|.++|.++..+|+.|++||+|
T Consensus 260 lF~~Ls~~swvcW~~P~s~~~~qi~sg~~GLGi~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~~n 339 (761)
T KOG2262|consen 260 LFPILSSFSWVCWIWPSSITANQIGSGLTGLGIGPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYWTN 339 (761)
T ss_pred HHHHHhhhheeeEeccccHHHHHhcccccccccccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCccccccCCceeeceEeecCCCCccchhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccHHH
Q 004424 323 AFEAKKFPLFSSKTFDSDGQVYNITRILNDKAFDLNEIGYRNYSKLYVSVIFAYIYGLSFATLMASISHVALFEGKTIWE 402 (754)
Q Consensus 323 ~~~~~~~P~~s~~~fd~~g~~yn~s~il~~~~~~~~~~~y~~~sp~~~~~~~~~~~~~~fa~~~~~i~~~~l~~~k~i~~ 402 (754)
.|+++++|+.|+++||++|++||+++|+| +|+++|.+|||+|||+|+++.++++|+.+||+++|+++|++|+|+| |
T Consensus 340 ~~~a~~fPI~Ss~lf~~tG~sYnvt~Il~-~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gk---d 415 (761)
T KOG2262|consen 340 TYDAKYFPIFSSSLFDHTGNSYNVTKILD-SKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGK---D 415 (761)
T ss_pred ceecceeceecCcceecCCcEeceeeeec-CccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccH---H
Confidence 99999999999999999999999999999 9999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHhhccCCCChhhhhhhhccCCCchHHHHHHHHHHHHHHhheehhcccccchhhHHHHHHHHHHHHHHhhheeeE
Q 004424 403 MWKKTAAAVNDKFGDVHTRLMKKNYEAVPQWWFQAILVLTFALSLYACEGFGKQLQLPWWGLLLACGMAFFFTLPVGVIQ 482 (754)
Q Consensus 403 i~~~~k~~~~~~~~D~h~~lm~~~y~~vP~ww~~~~~~~s~~~~i~~~~~~~~~~~lp~w~~ilal~la~v~~i~~~~~~ 482 (754)
+|+..|++. ++++|+|+|+||| |||||+|||.+++++++++++++|+.|+++.|+|||++++|+++++++++|.|+++
T Consensus 416 iw~~~~~~~-~k~~DiHtrlMkk-YKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~ 493 (761)
T KOG2262|consen 416 IWQQTKKAF-NKKMDIHTRLMKK-YKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQ 493 (761)
T ss_pred HHHHHHhcc-ccCCCHHHHHHHH-hccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhh
Confidence 999998774 7889999999999 99999999999999999999999999987779999999999999999999999999
Q ss_pred eeccCcchhHHHHHHhhhhccCCchhHHHHHHHHhhhhHHHhHHhhhhccchhccCCChHHHHHHHHHhHHHhHhHHHHH
Q 004424 483 ATTNLQTGLNVITELVIGYMYPGKPLANVTFKTYGYISMSQALSFLGDFKLGHYMKVPPKSMFIVQLVGTLVASTAYFGT 562 (754)
Q Consensus 483 g~T~~~~~l~~i~qli~G~~~pG~~~anm~~~~~~~~~~~qa~~~~~DlK~G~y~k~pPR~~f~~Q~iGtivg~~v~~~v 562 (754)
|+||++|++|+++|+|.||++||+|+|||.||.||+.++.||+.+++|+|+|||||+|||.||.+|++||+++++|+.+|
T Consensus 494 AtTNq~~GLNiitE~i~Gy~~PgrPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn~gv 573 (761)
T KOG2262|consen 494 ATTNQTPGLNIITEYIIGYIYPGRPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVNLGV 573 (761)
T ss_pred hhccCCccHHHHHHHHHHhhcCCchHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheeeeHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCCCCCCccccchhhhhhcceeeeeecCccccCCCCChhhHHHHHHHHHHHHHHHHHhhhhcCCc
Q 004424 563 AWWLLTSIDHICNPSLLPEGSPWTCPGDEVFYNASIIWGVVGPLRMFTNYGNYPQMNWFFLIGFLAPFPGWLLSRKFPEK 642 (754)
Q Consensus 563 ~~~~l~~~~~~~~~~ll~~~~~~tcp~~~~~~~~sv~wg~~gp~~~f~~~~~y~~~~~~fliG~~~pi~~~ll~r~~p~~ 642 (754)
..|++.+++++|+.+ |++.||||..+++|++||+||++||+|+|+.++.|+.+.|+|++|+++|+++|+++|++|++
T Consensus 574 ~~W~m~~I~~iC~~~---~~s~~TCP~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw~~~k~fPk~ 650 (761)
T KOG2262|consen 574 AWWLMYSIPNICTTD---QNSPWTCPSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLVWLLQKKFPKK 650 (761)
T ss_pred HHHHHhcccccccCC---CCCCccCCCCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHHHHHHHhcchh
Confidence 999999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhHHhhhcccccCccchhchHHHHHHHHHHHHHHhcCccccchhhHHHhHhhhhhhHHHHHHHHHHHHhCCCC
Q 004424 643 KWIKNIHMPILLGGPLNLPSAKAVNYTSWAAVGIFFNYYVFRRYKGWWARHNYILSAALDAGVAFMAIMIYFALQSNDIF 722 (754)
Q Consensus 643 ~~~~~i~~p~~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~~kynyvlaagL~~G~~i~~iii~~a~~~~g~~ 722 (754)
.|.+++|+|++++|.+.+||++..||++|+++|+++++++|||++.||+||||++|||||||.+++++++||++|+.|+
T Consensus 651 ~w~~~i~~pvl~gg~~~mPpat~vny~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vliffcv~~~~~- 729 (761)
T KOG2262|consen 651 KWIKQINPPVLFGGTANMPPATAVNYTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFFCVQYPGI- 729 (761)
T ss_pred hhhhccCcceEecccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhhheeccCCC-
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCC-CCCCCCCCCCCCccccCCCCCC
Q 004424 723 GPQWWGLDST-DHCPLAKCPIAPGIKADGCPVL 754 (754)
Q Consensus 723 ~~~wwG~n~~-~~c~~~~~~~~~~~~~~~~~~~ 754 (754)
..+||| |++ ++|+..+|+..+....++||.+
T Consensus 730 ~~~WWG-n~~~~~c~~a~cp~~~~v~~~~~~~f 761 (761)
T KOG2262|consen 730 SLNWWG-NTVSAGCDLAGCPTAKGVVVSGCPVF 761 (761)
T ss_pred cccccc-CcCCCCCCccCCCcCCeeecCCCCCC
Confidence 888999 766 5999999999999999988864
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=1.5e-178 Score=1534.96 Aligned_cols=676 Identities=37% Similarity=0.730 Sum_probs=658.4
Q ss_pred CCCCchhhhhccCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHhcCCCcc
Q 004424 30 VNDNPIEEVRLTVPITDDPSQPVLTFRTWILGITSCGLLAFVNQFFGYRQNQLSVGSVSAQILVLPIGKLMAATLPTKQM 109 (754)
Q Consensus 30 ~~~sp~~evr~~v~~~Ddp~~p~lT~Ra~~lG~~l~~i~~~~n~~f~lr~~~~~~~s~~~~ll~~~ig~~~a~~lP~~~~ 109 (754)
||||||||||++||++|||++|++|||+|++|++++++++++||+|++|+|+++++++++||++||+||+|+|++|++++
T Consensus 1 ~~~spypeVr~~v~~~DDp~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~ 80 (681)
T TIGR00727 1 EFDSPYPEVRAAVPPTDDPTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTI 80 (681)
T ss_pred CCCCcchhhhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccccCCCCCCccchhheeecccccccchhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhHHHHhhcccccc
Q 004424 110 RVPFTKWSFSLNPGPFNLKEHVLITIFAGCGASGVYAVNIITIVKAFYNRSLHPVAAMLLVQTTQLLGYGWAGIFRKYLV 189 (754)
Q Consensus 110 ~~~g~~~~~~lNPgpf~~kE~~~i~~~Asaa~~~~~a~~~i~~~~~~y~~~~~~~~~il~~ls~q~lG~~~Ag~lR~~lV 189 (754)
+++| ++|+|||||||+|||+++|+||+++++.+++++++.+|++||++++++++++++++++|++|+++||++||++|
T Consensus 81 ~~~g--~~~~lNPGPF~~KEh~liti~a~~~~~~~y~~~~i~~~~~fy~~~~~~g~~il~~lstq~~G~g~Ag~lRr~lV 158 (681)
T TIGR00727 81 TIRG--RKYNIIPGPFNVKEHMFITLMYAVSFGAAYTTDIILAQKLFYKSAFGFGYQFLLSLSTQFIGFGFAGILRRFVV 158 (681)
T ss_pred cccc--ceeccCCCCCChhcceeeeeeeehhccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhceEe
Confidence 8876 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcCcchHHHHHHHHHhhccCCCC--CCccchhHHHHHHHHHHHhHhhcccchhhhcccccceehhccCCcceeecc
Q 004424 190 DSPYMWWPSNLVQVSLFRALHEKERRP--KGGLTRLQFFLLVFVSSFGYYIIPGYLFPSLSALSFVCLIWKDSITAQKLG 267 (754)
Q Consensus 190 ~p~~l~~Ps~lata~l~~sLh~~~~~~--~~~~sr~k~f~~~f~~~fv~~~~P~yi~p~L~~~~~~~wi~p~~~~~~~i~ 267 (754)
+|++|+||++|+|++|+|+||+++++. .|++||+|+|+++|+++|+|+|+|+|+||+|+.|||+||++|+|+++++||
T Consensus 159 ~p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~i~ 238 (681)
T TIGR00727 159 YPARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQIF 238 (681)
T ss_pred ccccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhhhh
Confidence 999999999999999999999865432 257899999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccc-ccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCccccccCCceeec
Q 004424 268 SGQHGLGIGS-FGLDWSTVAGFLGSPLATPFFAIANILAGYFLFLYVLVPIAYWSNAFEAKKFPLFSSKTFDSDGQVYNI 346 (754)
Q Consensus 268 Gg~~GlGl~~-~tfDws~i~a~~gspl~~p~~~~~~~~~G~vl~~~ii~P~ly~~n~~~~~~~P~~s~~~fd~~g~~yn~ 346 (754)
||.+|||++| +|||||+|++++|+||++|+++++|+++|.+++++++.|++||+|.|+++|+|++|+++||++|++||+
T Consensus 239 g~~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy~N~w~~~~lPi~s~~~fd~~G~~Y~v 318 (681)
T TIGR00727 239 GGSTGLGINPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYYSNTWYCQYLPISSNGLYDNFGHSYNV 318 (681)
T ss_pred ccccCCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCccchhhhcCCCcccc
Confidence 9999999999 899999998788999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCccchhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCChhhhhhhhc
Q 004424 347 TRILNDKAFDLNEIGYRNYSKLYVSVIFAYIYGLSFATLMASISHVALFEGKTIWEMWKKTAAAVNDKFGDVHTRLMKKN 426 (754)
Q Consensus 347 s~il~~~~~~~~~~~y~~~sp~~~~~~~~~~~~~~fa~~~~~i~~~~l~~~k~i~~i~~~~k~~~~~~~~D~h~~lm~~~ 426 (754)
++|+| +|++||++|||||||+|++++++++|+.+||+++++++|++|+||| ++++++|+ ++++|+|.|+||+
T Consensus 319 s~il~-~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~---~i~~~~~~---~~~~D~h~rlM~~- 390 (681)
T TIGR00727 319 TEILD-KDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGK---LLFNALKD---DDYPDPHSNLMKA- 390 (681)
T ss_pred ceeeC-CCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHhc---CCCCChhHHHhhc-
Confidence 99999 9999999999999999999999999999999999999999999999 99988873 5678999999998
Q ss_pred cCCCchHHHHHHHHHHHHHHhheehhcccccchhhHHHHHHHHHHHHHHhhheeeEeeccCcchhHHHHHHhhhhccCCc
Q 004424 427 YEAVPQWWFQAILVLTFALSLYACEGFGKQLQLPWWGLLLACGMAFFFTLPVGVIQATTNLQTGLNVITELVIGYMYPGK 506 (754)
Q Consensus 427 y~~vP~ww~~~~~~~s~~~~i~~~~~~~~~~~lp~w~~ilal~la~v~~i~~~~~~g~T~~~~~l~~i~qli~G~~~pG~ 506 (754)
|||||+|||++++++++++++++++.+ ++++|||++++|+++++++.+|.++++|+||+++++|+++|+|+|++.|||
T Consensus 391 Y~evP~WWy~~~l~is~~~~~~~v~~~--~t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~~ln~l~eli~Gy~~PG~ 468 (681)
T TIGR00727 391 YKEVPDWWYLAVFLGFFGMGIATVEHW--PTETPVWGLFVCLIFNFVFLIPTTILQATTNISFGLNVLTEFIVGYALPGR 468 (681)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHhhhheEeecCCccchhHHHHHHhhhccCCC
Confidence 999999999999999999999999998 689999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhHHHhHHhhhhccchhccCCChHHHHHHHHHhHHHhHhHHHHHHHHHHhhcccCCCCCCCCCCCCcc
Q 004424 507 PLANVTFKTYGYISMSQALSFLGDFKLGHYMKVPPKSMFIVQLVGTLVASTAYFGTAWWLLTSIDHICNPSLLPEGSPWT 586 (754)
Q Consensus 507 ~~anm~~~~~~~~~~~qa~~~~~DlK~G~y~k~pPR~~f~~Q~iGtivg~~v~~~v~~~~l~~~~~~~~~~ll~~~~~~t 586 (754)
|+|||+||++++++.+||.++++|||+|||||+|||+||.+|++||++|++|+++|++|++++++|+|+++ |+++||
T Consensus 469 p~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v~~~~l~~i~~~c~~~---~~~~ft 545 (681)
T TIGR00727 469 PLAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIGVLNWAIGNIDNFCTAD---QNAKYT 545 (681)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC---CCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred ccchhhhhhcceeeeeecCccccCCCCChhhHHHHHHHHHHHHHHHHHhhhhcCCcccccccchhHHhhhcccccCccch
Q 004424 587 CPGDEVFYNASIIWGVVGPLRMFTNYGNYPQMNWFFLIGFLAPFPGWLLSRKFPEKKWIKNIHMPILLGGPLNLPSAKAV 666 (754)
Q Consensus 587 cp~~~~~~~~sv~wg~~gp~~~f~~~~~y~~~~~~fliG~~~pi~~~ll~r~~p~~~~~~~i~~p~~~~g~~~~~p~~~~ 666 (754)
||..++++++||+||++||+|+|++|++|+.++|+|++|+++|++.|+++|++||+ ++|++|.|+++.|++++||++++
T Consensus 546 cp~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~~~~r~~P~~-~~~~~n~pv~~~~~g~~~~a~~~ 624 (681)
T TIGR00727 546 CPNAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIGACIGIFFWLVWKKWPKF-YPRYLDWPMLFVGTGYIPPATPY 624 (681)
T ss_pred CCCccceeehehhhhhcchHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHhcchh-hhhhCCccHHHhhccccCCcchh
Confidence 99999999999999999999999999999999999999999999999999999976 67999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHHhcCccccchhhHHHhHhhhhhhHHHHHHHHHHHHhCCC
Q 004424 667 NYTSWAAVGIFFNYYVFRRYKGWWARHNYILSAALDAGVAFMAIMIYFALQSNDI 721 (754)
Q Consensus 667 ~~~~~~~vG~~~~~~~rr~~~~w~~kynyvlaagL~~G~~i~~iii~~a~~~~g~ 721 (754)
|++.+.++|+++|+|+||||++||+||||++|||||+|++++++++||+++++++
T Consensus 625 n~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iiff~v~~~~~ 679 (681)
T TIGR00727 625 NYMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIFFCLQLKDT 679 (681)
T ss_pred hHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHheeEEEeCCC
Confidence 9999999999999999999999999999999999999999999999999999876
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=2.4e-127 Score=1127.98 Aligned_cols=640 Identities=42% Similarity=0.748 Sum_probs=586.2
Q ss_pred hhhhccCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHhcCCCccccCCcc
Q 004424 36 EEVRLTVPITDDPSQPVLTFRTWILGITSCGLLAFVNQFFGYRQNQLSVGSVSAQILVLPIGKLMAATLPTKQMRVPFTK 115 (754)
Q Consensus 36 ~evr~~v~~~Ddp~~p~lT~Ra~~lG~~l~~i~~~~n~~f~lr~~~~~~~s~~~~ll~~~ig~~~a~~lP~~~~~~~g~~ 115 (754)
+|||+ +|++|||++|++|+|+|++|++++++++++|+||+||+|+++.+++++|+++|++||+|+|++|+|+ +
T Consensus 1 ~~vra-v~~~ddp~~~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~------~ 73 (654)
T TIGR00728 1 QEVRA-VPPTDDPSLPVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWE------G 73 (654)
T ss_pred Ccccc-CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCcc------c
Confidence 58999 9999999999999999999999999999999999999999999999999999999999999999985 3
Q ss_pred cccccCCCCCCccchhheeecccccccchhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH--hhHHHHhhccccccccCC
Q 004424 116 WSFSLNPGPFNLKEHVLITIFAGCGASGVYAVNIITIVKAFYNRSLHPVAAMLLVQTTQL--LGYGWAGIFRKYLVDSPY 193 (754)
Q Consensus 116 ~~~~lNPgpf~~kE~~~i~~~Asaa~~~~~a~~~i~~~~~~y~~~~~~~~~il~~ls~q~--lG~~~Ag~lR~~lV~p~~ 193 (754)
+||+|||||||+|||+++|+|||++++.+++.+.+.+|..||+++.++++++++++++|+ +|+++|+++||++|+|++
T Consensus 74 ~~~~lnpgpft~kE~~~iq~~asa~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~~~ 153 (654)
T TIGR00728 74 WKFSLNPGPFNVKENNLIQTAASACGGLAYAIFILPAQKMFYTSNFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVPAK 153 (654)
T ss_pred cceecCCCCCChhhheeEEeeeeccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeCccc
Confidence 789999999999999999999999999888888888999999999999999999999999 999999999999999999
Q ss_pred CcCcchHHHHHHHHHhhccCCCCC-CccchhHHHHHHHHHHHhHhhcccchhhhcccccceehhccCCcceeeccccccC
Q 004424 194 MWWPSNLVQVSLFRALHEKERRPK-GGLTRLQFFLLVFVSSFGYYIIPGYLFPSLSALSFVCLIWKDSITAQKLGSGQHG 272 (754)
Q Consensus 194 l~~Ps~lata~l~~sLh~~~~~~~-~~~sr~k~f~~~f~~~fv~~~~P~yi~p~L~~~~~~~wi~p~~~~~~~i~Gg~~G 272 (754)
|+||+++|+++|+|+||++.+..+ ++++| +. ..+ |.++|+.+..++|+||+.|++..++ +|| |
T Consensus 154 l~~P~~la~a~l~~al~~~~~~~~g~~~~r--~l-~~~---------~~~~f~~~~~~~~~~~~~p~~~~~~-~fg---g 217 (654)
T TIGR00728 154 LPWPSGLATAELFKALHGKFHTANGDTIAK--NL-LRV---------LLKYFSSSFLWSFVSWFFPGFTAFQ-TFG---G 217 (654)
T ss_pred ccCCcccHHHHHHHHhhhccCccCCCccch--hH-HHh---------HHHHHHHHHHHHHHHHHhcCCcccc-ccc---c
Confidence 999999999999999987544332 33444 22 111 5566677777889999999887775 455 7
Q ss_pred CCcccccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCccccccCCceeec-eEeec
Q 004424 273 LGIGSFGLDWSTVAGFLGSPLATPFFAIANILAGYFLFLYVLVPIAYWSNAFEAKKFPLFSSKTFDSDGQVYNI-TRILN 351 (754)
Q Consensus 273 lGl~~~tfDws~i~a~~gspl~~p~~~~~~~~~G~vl~~~ii~P~ly~~n~~~~~~~P~~s~~~fd~~g~~yn~-s~il~ 351 (754)
+|+++++|||+++.+++|+|+++|+++++|+++|++++|+++.|++||+|+|+++++|++|++.+|++|.+|+. ++|++
T Consensus 218 lg~~~~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~~n~~~~~~~p~~s~~~~~~~~~~y~~~~~il~ 297 (654)
T TIGR00728 218 LGSGSIGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYYKNTWPADADPIDSSSTIDSTGVRYNSVGLIVV 297 (654)
T ss_pred ccccccceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCcchhhhcCCCceeeeeeEEEe
Confidence 88999999999986789999999999999999999999999999999999999999999999999999999998 99998
Q ss_pred CCC-CccchhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCChhhhhhhh-----
Q 004424 352 DKA-FDLNEIGYRNYSKLYVSVIFAYIYGLSFATLMASISHVALFEGKTIWEMWKKTAAAVNDKFGDVHTRLMKK----- 425 (754)
Q Consensus 352 ~~~-~~~~~~~y~~~sp~~~~~~~~~~~~~~fa~~~~~i~~~~l~~~k~i~~i~~~~k~~~~~~~~D~h~~lm~~----- 425 (754)
++ .++|+++|++|||+|+++++ |+.+|+.++++++|.+++|+| ++++++|+.. ++.+|.|.++||+
T Consensus 298 -~~~~~l~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~d~~ 369 (654)
T TIGR00728 298 -DGLWTLVKPLYPIYSPLVLSIDF---YALLFNAFSDTIYSFALAHGR---DIISARRDHY-KLGRDDHVRLLSRDEDLK 369 (654)
T ss_pred -CCCceecHHHHHHhCcceeeHHH---HHHHHHHHHHHHHHHHHHhhH---HHHHHHHHhh-hccCCCChHHHhhccccc
Confidence 55 79999999999999999999 899999999999999999999 8887776553 3445666666554
Q ss_pred --ccCCCchHHHHHHHHHHHHHHhheehhcccccchhhHHHHHHHHHHHHHHhhheeeEeeccCcchhHHHHHHhhhhcc
Q 004424 426 --NYEAVPQWWFQAILVLTFALSLYACEGFGKQLQLPWWGLLLACGMAFFFTLPVGVIQATTNLQTGLNVITELVIGYMY 503 (754)
Q Consensus 426 --~y~~vP~ww~~~~~~~s~~~~i~~~~~~~~~~~lp~w~~ilal~la~v~~i~~~~~~g~T~~~~~l~~i~qli~G~~~ 503 (754)
+|||||+|||+.+++++++++++++++++..+++|||++++|++++++|++|.++++|+||...++|+++|+++|++.
T Consensus 370 ~~~~~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~tnp~~~l~~~~~li~g~~~ 449 (654)
T TIGR00728 370 VKNYKEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGITNPVSGLNIITELIIGYIL 449 (654)
T ss_pred ccccCcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEeecccchhhHHHHHhheeec
Confidence 149999999999999999999998888854578999999999999999999999999999888899999999999999
Q ss_pred CCchhHHHHHHHHhhhhHHHhHHhhhhccchhccCCChHHHHHHHHHhHHHhHhHHHHHHHHHHhhcccCCCCCCCCCCC
Q 004424 504 PGKPLANVTFKTYGYISMSQALSFLGDFKLGHYMKVPPKSMFIVQLVGTLVASTAYFGTAWWLLTSIDHICNPSLLPEGS 583 (754)
Q Consensus 504 pG~~~anm~~~~~~~~~~~qa~~~~~DlK~G~y~k~pPR~~f~~Q~iGtivg~~v~~~v~~~~l~~~~~~~~~~ll~~~~ 583 (754)
||+|++||+++++++++++||.|++||||+|||+|+|||+||.+|++|+++|++++++|++|+.+++++ +++
T Consensus 450 pg~~~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~v~~~~~~~~~~--------~~~ 521 (654)
T TIGR00728 450 PGRPLANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAPVLEWLYHAIGN--------QNN 521 (654)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--------CCC
Confidence 999999999999999999999999999999999999999999999999999999999999999987753 567
Q ss_pred CccccchhhhhhcceeeeeecCccccCCCCChhhHHHHHHHHHHHHHHHHHhhhhcCCcccccccchhHHhhhcccccCc
Q 004424 584 PWTCPGDEVFYNASIIWGVVGPLRMFTNYGNYPQMNWFFLIGFLAPFPGWLLSRKFPEKKWIKNIHMPILLGGPLNLPSA 663 (754)
Q Consensus 584 ~~tcp~~~~~~~~sv~wg~~gp~~~f~~~~~y~~~~~~fliG~~~pi~~~ll~r~~p~~~~~~~i~~p~~~~g~~~~~p~ 663 (754)
+|+||.+++++++|++||++||+ +|+.+++|+.+.|++++| +++++.+++||++|| +.+++|+|+++.+..++||.
T Consensus 522 ~~~~p~a~~~~~aa~~~g~~Gp~-~f~~~~~y~~~~~~~l~G-~~~i~~~~~~~~~p~--~~~~~~~~~~~~~~~~lp~~ 597 (654)
T TIGR00728 522 NFTCPNALVFYNASLIWGVIGPK-IFSGKGLYCGLMWFFLVG-VGAVLVWLVRKLFPK--WIKYINPPVAVGGGGYIPPA 597 (654)
T ss_pred CccCCcccchhhheeeeccccch-hcCCCCccHHHHHHHHHH-HHHHHHHHHHHHccc--hhhhcCHHHhhhhhhccCCc
Confidence 89999999999999999999999 999989999999999999 899999999999986 56899999998888888988
Q ss_pred cchhchHHHHHHHHHHHHHHhcCcccc--chhhHHHhHhhhhhhHHHHHHHHHHHHh
Q 004424 664 KAVNYTSWAAVGIFFNYYVFRRYKGWW--ARHNYILSAALDAGVAFMAIMIYFALQS 718 (754)
Q Consensus 664 ~~~~~~~~~~vG~~~~~~~rr~~~~w~--~kynyvlaagL~~G~~i~~iii~~a~~~ 718 (754)
++.++.++.++|.+++++||||+++|| +||||++||||||||+|+++++||++++
T Consensus 598 ~~~~~~~~~~vG~~~~~~~~rr~~~~~~~~~y~~~laagL~~G~al~gviiff~~~~ 654 (654)
T TIGR00728 598 TAVNYSTWAAVGGFFNYRWRKNKRADWKAEKYNYVLAAGLIAGEALAGVIIFFCLGL 654 (654)
T ss_pred chhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHhccC
Confidence 888899999999999999999998887 9999999999999999999999999875
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=2.1e-119 Score=1058.05 Aligned_cols=613 Identities=38% Similarity=0.725 Sum_probs=570.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHhcCCCccccCCcccccccCCCCCCccchh
Q 004424 52 VLTFRTWILGITSCGLLAFVNQFFGYRQNQLSVGSVSAQILVLPIGKLMAATLPTKQMRVPFTKWSFSLNPGPFNLKEHV 131 (754)
Q Consensus 52 ~lT~Ra~~lG~~l~~i~~~~n~~f~lr~~~~~~~s~~~~ll~~~ig~~~a~~lP~~~~~~~g~~~~~~lNPgpf~~kE~~ 131 (754)
|+|+|++++|++++++++++|+||++|+|+++.+++++||++|+++|.++|. ++++++||||||+|||+
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~-----------~~~~~ln~gp~~~kE~~ 69 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARI-----------GWRFSLNPGPFTIKENN 69 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhh-----------ccccccCCCCCCHHHHH
Confidence 6899999999999999999999999999999999999999999999999982 25678999999999999
Q ss_pred heeecccccccchhhhHHHHHHHH--HhcCCCCHHHHHHHHHHHHHhhHHHHhhccccccccCCCcCcchHHHHHHHHHh
Q 004424 132 LITIFAGCGASGVYAVNIITIVKA--FYNRSLHPVAAMLLVQTTQLLGYGWAGIFRKYLVDSPYMWWPSNLVQVSLFRAL 209 (754)
Q Consensus 132 ~i~~~Asaa~~~~~a~~~i~~~~~--~y~~~~~~~~~il~~ls~q~lG~~~Ag~lR~~lV~p~~l~~Ps~lata~l~~sL 209 (754)
++|++||++++++++.++++++|+ ||++++++++++++++++|++|+++|+++||++|+|++|+||+++|+++++++|
T Consensus 70 ~vq~~asa~~~~~~a~~~i~~ipa~~~~~~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~al 149 (624)
T PF03169_consen 70 LVQTMASAAGGMAYAAGFIAAIPALLFLGQPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAELINAL 149 (624)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHHHHHHh
Confidence 999999999999999999999654 789999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCccchhHHHHHHHHHHHhHhhcccchhhhcccccceehhccCCcceeeccccccCCCccccccccccccccc
Q 004424 210 HEKERRPKGGLTRLQFFLLVFVSSFGYYIIPGYLFPSLSALSFVCLIWKDSITAQKLGSGQHGLGIGSFGLDWSTVAGFL 289 (754)
Q Consensus 210 h~~~~~~~~~~sr~k~f~~~f~~~fv~~~~P~yi~p~L~~~~~~~wi~p~~~~~~~i~Gg~~GlGl~~~tfDws~i~a~~ 289 (754)
|++++. +.+++|+|+|+++|+++++|+|+|+|++|+|+.++|+||++|+|+..++++|+.+ ++||||++ ++
T Consensus 150 h~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~------~~~dws~~--~~ 220 (624)
T PF03169_consen 150 HSGGGW-REAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWS------FSFDWSPI--LI 220 (624)
T ss_pred ccCccc-hhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccce------eeEeecHH--hc
Confidence 998722 2357999999999999999999999999999999999999999999999988765 99999996 47
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHhhc-cccccCCCCCCCccccccCCceeeceEeecCCCCccchhhhhccCCc
Q 004424 290 GSPLATPFFAIANILAGYFLFLYVLVPIAYWS-NAFEAKKFPLFSSKTFDSDGQVYNITRILNDKAFDLNEIGYRNYSKL 368 (754)
Q Consensus 290 gspl~~p~~~~~~~~~G~vl~~~ii~P~ly~~-n~~~~~~~P~~s~~~fd~~g~~yn~s~il~~~~~~~~~~~y~~~sp~ 368 (754)
|+|+++|+++++|+++|.+++|+++.|++||+ |.|+++++|++|+++||++|+ +|+++|+++|+++|++
T Consensus 221 g~g~i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~----------~~~~~~~~~~~~~g~~ 290 (624)
T PF03169_consen 221 GSGLIVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGS----------SDGTLNWTKYIGYGPM 290 (624)
T ss_pred CCCeeccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCc----------cccccCHHHHHHHHHH
Confidence 99999999999999999999999999999988 999999999999999999986 4678999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHh------hccCCCChhhhhhhhccCCCchHHHHHHHHHH
Q 004424 369 YVSVIFAYIYGLSFATLMASISHVALFEGKTIWEMWKKTAAA------VNDKFGDVHTRLMKKNYEAVPQWWFQAILVLT 442 (754)
Q Consensus 369 ~~~~~~~~~~~~~fa~~~~~i~~~~l~~~k~i~~i~~~~k~~------~~~~~~D~h~~lm~~~y~~vP~ww~~~~~~~s 442 (754)
+.+..+.++|+.+|+.++++++|.+++|+| ++++++|+. .+++++|+|++.|++ |||+|+|||+.+++++
T Consensus 291 ~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~vP~ww~~~~~~~~ 366 (624)
T PF03169_consen 291 YGSGLFALSYGWSFAALTASIVHAILWHWK---AIWQAFKQSKSSQRSSKSSEDDPHYRLMRT-YKEVPMWWYLAGLVVS 366 (624)
T ss_pred HHhHHHHHhhcccchhhHHHHHHHHHHHHH---HHHhhhhhhcccccccccccCCchhhhhhh-cCCcchHHHHHHHHHH
Confidence 999999999999999999999999999999 777655432 134678999999998 9999999999999999
Q ss_pred HHHHhheehhcccccchhhHHHHHHHHHHHHHHhhheeeEeeccCcc--hhHHHHHHhhhhccCCchhHHHHHHHHhhhh
Q 004424 443 FALSLYACEGFGKQLQLPWWGLLLACGMAFFFTLPVGVIQATTNLQT--GLNVITELVIGYMYPGKPLANVTFKTYGYIS 520 (754)
Q Consensus 443 ~~~~i~~~~~~~~~~~lp~w~~ilal~la~v~~i~~~~~~g~T~~~~--~l~~i~qli~G~~~pG~~~anm~~~~~~~~~ 520 (754)
++++++++..++.++++|+|++++++++++++++|.++++|+||++| ++++++|+++|++.||++++||+++++++++
T Consensus 367 ~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~pg~~~a~l~~~~~~~~~ 446 (624)
T PF03169_consen 367 FVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLLPGNPIANLLFGGYGYAA 446 (624)
T ss_pred HHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99999999888545899999999999999999999999999999976 8999999999999999999999999999999
Q ss_pred HHHhHHhhhhccchhccCCChHHHHHHHHHhHHHhHhHHHHHHHHHHhhcccCCCCCCCCCCCCccccchhhhhhcceee
Q 004424 521 MSQALSFLGDFKLGHYMKVPPKSMFIVQLVGTLVASTAYFGTAWWLLTSIDHICNPSLLPEGSPWTCPGDEVFYNASIIW 600 (754)
Q Consensus 521 ~~qa~~~~~DlK~G~y~k~pPR~~f~~Q~iGtivg~~v~~~v~~~~l~~~~~~~~~~ll~~~~~~tcp~~~~~~~~sv~w 600 (754)
++||.|++||||+|||+|+|||+||++|++|+++|+++++++++++ +.++.|.++ +++.++||..|+.++++++|
T Consensus 447 ~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~--~~~~~~~~~---~~~~~~~~ap~a~~~aav~~ 521 (624)
T PF03169_consen 447 ASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLL--NQAYPCGPD---QGDSFSCPAPQAFAWAAVAW 521 (624)
T ss_pred HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCcc---ccccCcCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877 677888776 66689999999999999999
Q ss_pred eeecCccccCCCCChhhHHHHHHHHHHHHHHHHHhhhhcCCcccccccchhHHhhhcccccCccchhchHHHHHHHHHHH
Q 004424 601 GVVGPLRMFTNYGNYPQMNWFFLIGFLAPFPGWLLSRKFPEKKWIKNIHMPILLGGPLNLPSAKAVNYTSWAAVGIFFNY 680 (754)
Q Consensus 601 g~~gp~~~f~~~~~y~~~~~~fliG~~~pi~~~ll~r~~p~~~~~~~i~~p~~~~g~~~~~p~~~~~~~~~~~vG~~~~~ 680 (754)
|++||+| +.+|..++|++++|++++++.++++|++|+. +++.|...+++.++.++++++++|.++++
T Consensus 522 g~~~~~~----~~~~~~~~~~~~~G~~~~i~~~l~~~~~P~~---------~~~~~~~~~~~~~~~~~~~~~~iG~~~~~ 588 (624)
T PF03169_consen 522 GLIGPQR----GLPYSALPWGFLIGAVLPILFWLLQRKFPSP---------LAFGGASSIGFYLPSNYTSAIFIGGLFQF 588 (624)
T ss_pred HhcCCcc----cchHHHHHHHHHHHHHHHHHHHHHHhhCChh---------heeeecccccccchhHHHHHHHHHHHHHH
Confidence 9999877 6789999999999999999999998888742 44566666777778889999999999999
Q ss_pred HHHhcCccccchhhHHHhHhhhhhhHHHHHHHHHHH
Q 004424 681 YVFRRYKGWWARHNYILSAALDAGVAFMAIMIYFAL 716 (754)
Q Consensus 681 ~~rr~~~~w~~kynyvlaagL~~G~~i~~iii~~a~ 716 (754)
++||||++||+||||++||||||||+|+++++++++
T Consensus 589 ~~~~~~~~~~~~y~~~laagl~aG~~l~~li~~~~~ 624 (624)
T PF03169_consen 589 YWRRRYPKWWEKYNYVLAAGLIAGEALMGLIIAFLV 624 (624)
T ss_pred HhhhcchhHHHhHhhHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999997753
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=3.1e-65 Score=587.51 Aligned_cols=548 Identities=14% Similarity=0.134 Sum_probs=405.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHhcCCCccccCCcccccccCCCCCCccchh
Q 004424 52 VLTFRTWILGITSCGLLAFVNQFFGYRQNQLSVGSVSAQILVLPIGKLMAATLPTKQMRVPFTKWSFSLNPGPFNLKEHV 131 (754)
Q Consensus 52 ~lT~Ra~~lG~~l~~i~~~~n~~f~lr~~~~~~~s~~~~ll~~~ig~~~a~~lP~~~~~~~g~~~~~~lNPgpf~~kE~~ 131 (754)
++|+|++++|++++++.+++|.|++||.|+++.+++++++++|.+.|.+. ++|++|||
T Consensus 1 elT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~----------------------~~t~~Enn 58 (591)
T TIGR00733 1 EYTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFR----------------------DRSILENN 58 (591)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhc----------------------cCChhHHH
Confidence 48999999999999999999999999999999999999999999999772 46999999
Q ss_pred heeecccccccchhhhHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhhHHHHhhccccccccCCCcCcchHHHHHHHH
Q 004424 132 LITIFAGCGASGVYAVNIITIVKAFYN----RSLHPVAAMLLVQTTQLLGYGWAGIFRKYLVDSPYMWWPSNLVQVSLFR 207 (754)
Q Consensus 132 ~i~~~Asaa~~~~~a~~~i~~~~~~y~----~~~~~~~~il~~ls~q~lG~~~Ag~lR~~lV~p~~l~~Ps~lata~l~~ 207 (754)
++||+|+++++.+ .++.++|+++- .+++++..+++++...++|+.|+.||||++|.+++|.||+++|++++++
T Consensus 59 ivQT~asA~~~~a---g~~~~lPAl~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~l~ 135 (591)
T TIGR00733 59 MVQTAASAAGTLS---SVIFVLPALLMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEVLK 135 (591)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Confidence 9999999998743 48899999864 3578999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCccchhHHHHHHHHHHHhHhhcccchhhhccccc--ceehhccCCcceeeccccccCCCccccccccccc
Q 004424 208 ALHEKERRPKGGLTRLQFFLLVFVSSFGYYIIPGYLFPSLSALS--FVCLIWKDSITAQKLGSGQHGLGIGSFGLDWSTV 285 (754)
Q Consensus 208 sLh~~~~~~~~~~sr~k~f~~~f~~~fv~~~~P~yi~p~L~~~~--~~~wi~p~~~~~~~i~Gg~~GlGl~~~tfDws~i 285 (754)
+-.+ + + +.+|.|.++.++..+++|.++++ ++.++ .-.|.. . |.+...|++|||+
T Consensus 136 ~g~~---g-~-~~~~~~~l~~g~~~s~~~~~~~~-----~~~~~~~~~~~~~---------~----g~~~~~~~~~~Sp- 191 (591)
T TIGR00733 136 AGDK---A-R-NGTGAKPIAYGGILASIYAFLGS-----LRVWSGTLSAAKL---------V----GRRALYFGSDLSL- 191 (591)
T ss_pred cccc---c-c-chhhHHHHHHHHHHHHHHHHHHH-----hccCCchHHHHHh---------c----CCcceEEEecccH-
Confidence 6422 1 1 23678899999999999988832 22221 011110 1 1112236789999
Q ss_pred ccccCCcccccHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCccccccCCceeeceEeecCCCCccchhhhhcc
Q 004424 286 AGFLGSPLATPFFAIANILAGYFLFLYVLVPIAYWSNAFEAKKFPLFSSKTFDSDGQVYNITRILNDKAFDLNEIGYRNY 365 (754)
Q Consensus 286 ~a~~gspl~~p~~~~~~~~~G~vl~~~ii~P~ly~~n~~~~~~~P~~s~~~fd~~g~~yn~s~il~~~~~~~~~~~y~~~ 365 (754)
+++|.|+++|+++.+++++|++++|+++.|.+..+++. ..+.+. .+ .. ..+ -.+
T Consensus 192 -alvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~~~~-~~~~~~-------~~-~~---~~v-------------w~~ 245 (591)
T TIGR00733 192 -ALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAKMGS-PGDLSA-------LD-LA---WTI-------------WST 245 (591)
T ss_pred -HHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCccH-------HH-HH---HHH-------------Hhc
Confidence 79999999999999999999999999999999865431 100000 00 00 012 224
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhcc--CCCChhhhhhhhccCCCchHHHHHHHHHHH
Q 004424 366 SKLYVSVIFAYIYGLSFATLMASISHVALFEGKTIWEMWKKTAAAVND--KFGDVHTRLMKKNYEAVPQWWFQAILVLTF 443 (754)
Q Consensus 366 sp~~~~~~~~~~~~~~fa~~~~~i~~~~l~~~k~i~~i~~~~k~~~~~--~~~D~h~~lm~~~y~~vP~ww~~~~~~~s~ 443 (754)
.+||++++.|+.. -.+.++...| .+++.+|+..+. ++++.+ ...|. .+|+|.||...+.++.
T Consensus 246 ~vR~iGvg~m~~~----------gl~~l~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~r~-~~dip~~~v~~~~~~~- 309 (591)
T TIGR00733 246 KVRYIGVGAIVVA----------ALWTLLKLRG---PIARGIKAGLEAARRRQAGE-AVLRT-EEDLPINIVLTLVALF- 309 (591)
T ss_pred ccchhhHHHHHHH----------HHHHHHHHHH---HHHHHHHHHHHHhccccccc-ccccc-cccccHHHHHHHHHHH-
Confidence 5788888888632 1222334444 444444332111 011111 12344 6889999754443322
Q ss_pred HHHhheehhcccccchh--------h-HHHHHHHHHHHHHHhhheeeEee--ccCcc--hhHHHHHHhhhhcc-------
Q 004424 444 ALSLYACEGFGKQLQLP--------W-WGLLLACGMAFFFTLPVGVIQAT--TNLQT--GLNVITELVIGYMY------- 503 (754)
Q Consensus 444 ~~~i~~~~~~~~~~~lp--------~-w~~ilal~la~v~~i~~~~~~g~--T~~~~--~l~~i~qli~G~~~------- 503 (754)
++. ...+ .++.| + .+.+++++++++++...+++.|+ ||.|| ++++++|++++.+.
T Consensus 310 ~~~---~~~~--~~~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~ 384 (591)
T TIGR00733 310 VIP---LADF--LLYAPILHNIGMAIAVMAVLMLIIGFFVAAIAGYMAGLVGSSNSPISGIGIMSVLFTALILKGLGLSG 384 (591)
T ss_pred HHH---HHHH--hcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCccc
Confidence 222 1111 23333 2 57788999999999999999999 77898 89999999999998
Q ss_pred -----CCchhHHHHHHHHhhhhHHHhHHhhhhccchhccCCChHHHHHHHHHhHHHhHhHHHHHHHHHHhhcccCCCCCC
Q 004424 504 -----PGKPLANVTFKTYGYISMSQALSFLGDFKLGHYMKVPPKSMFIVQLVGTLVASTAYFGTAWWLLTSIDHICNPSL 578 (754)
Q Consensus 504 -----pG~~~anm~~~~~~~~~~~qa~~~~~DlK~G~y~k~pPR~~f~~Q~iGtivg~~v~~~v~~~~l~~~~~~~~~~l 578 (754)
|+...+|++.+++.+.+++||.|++||||+||+++++||+||++|++|+++|+++..++++.+.+.+ ++..+.-
T Consensus 385 ~~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlGatPr~Q~~aq~iG~~vg~~v~~~v~~ll~~ay-g~~~~~~ 463 (591)
T TIGR00733 385 TGSQIPELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVGATPWRQQVALIIGTFVGALVMAPVLNLLIKAY-GIAGTPT 463 (591)
T ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccc
Confidence 3567889999999999999999999999999999999999999999999999999999997665544 4322111
Q ss_pred CCCCCCccccchhhhhhcceeeeeecCccccCCCCChhhHHHH-HHHHHHHHHHHHHhhhhcCCcccccccchhHHhhhc
Q 004424 579 LPEGSPWTCPGDEVFYNASIIWGVVGPLRMFTNYGNYPQMNWF-FLIGFLAPFPGWLLSRKFPEKKWIKNIHMPILLGGP 657 (754)
Q Consensus 579 l~~~~~~tcp~~~~~~~~sv~wg~~gp~~~f~~~~~y~~~~~~-fliG~~~pi~~~ll~r~~p~~~~~~~i~~p~~~~g~ 657 (754)
.|+++.|++|++..|.+.+ .|+.+ .. ++|. ..+|+++.+++.++++..++++ +++..|.+..|+
T Consensus 464 ~~~~~~l~APqA~l~~ava--~gi~~------~~-----l~~~~i~~ga~~g~~l~~~~~~~~~~~--~~~~~p~lavgi 528 (591)
T TIGR00733 464 AKGENALPAPQAFLMAAVT--EGVFT------GT-----LEWTMVFIGAGIGIALIIIDEILAKRG--SKFRTPVMAVGV 528 (591)
T ss_pred CCCccccCCCHHHHHHHHH--hhhcC------CC-----ccHHHHHHHHHHHHHHHHHHHHhhhcc--cccCCchhHHHH
Confidence 2245679999998885543 34433 21 3454 3466766766766665555432 345568888999
Q ss_pred ccccCccchhchHHHHHHHHHHHHHHhcCcccc------chhhHHHhHhhhhhhHHHHHHHHH
Q 004424 658 LNLPSAKAVNYTSWAAVGIFFNYYVFRRYKGWW------ARHNYILSAALDAGVAFMAIMIYF 714 (754)
Q Consensus 658 ~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~------~kynyvlaagL~~G~~i~~iii~~ 714 (754)
+++.|. +++..+++|.+..++|+||+++-. ++|.+++||||++||+|+|+++..
T Consensus 529 g~yLP~---~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASGLIaGE~l~Gv~~A~ 588 (591)
T TIGR00733 529 GIYLPL---SLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAGLIVGESLTGVVFAA 588 (591)
T ss_pred Hhhcch---hHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecHhhcchHHHHHHHHH
Confidence 998764 368899999999999999765321 467899999999999999999854
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=9.6e-50 Score=438.81 Aligned_cols=567 Identities=15% Similarity=0.151 Sum_probs=403.6
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHhcCCCccccCCcccccccCCCCCCc
Q 004424 48 PSQPVLTFRTWILGITSCGLLAFVNQFFGYRQNQLSVGSVSAQILVLPIGKLMAATLPTKQMRVPFTKWSFSLNPGPFNL 127 (754)
Q Consensus 48 p~~p~lT~Ra~~lG~~l~~i~~~~n~~f~lr~~~~~~~s~~~~ll~~~ig~~~a~~lP~~~~~~~g~~~~~~lNPgpf~~ 127 (754)
.++|++|+|++++|+++++++.++|.|+|+|.|.++.++++++++|+.+.|.+ .++|+
T Consensus 10 ~~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVISmavlk~~----------------------~~~si 67 (624)
T COG1297 10 AFLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVISMAVLKAF----------------------KGSSI 67 (624)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHHHHHHHHh----------------------Cccch
Confidence 36899999999999999999999999999999999999999999999999877 26799
Q ss_pred cchhheeecccccccchhhhHHHHHHHHH----hcCCCCHHHHHHHHHHHHHhhHHHHhhccccccccCCCcCcchHHHH
Q 004424 128 KEHVLITIFAGCGASGVYAVNIITIVKAF----YNRSLHPVAAMLLVQTTQLLGYGWAGIFRKYLVDSPYMWWPSNLVQV 203 (754)
Q Consensus 128 kE~~~i~~~Asaa~~~~~a~~~i~~~~~~----y~~~~~~~~~il~~ls~q~lG~~~Ag~lR~~lV~p~~l~~Ps~lata 203 (754)
.|||++||+||++++ .++++|.++|.. |+++++++....++....++|+.|+.||||.+|.++|+.||++.|+|
T Consensus 68 lENNmVQT~ASAagt--lsa~vIFviPgl~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGvAaA 145 (624)
T COG1297 68 LENNMVQTQASAAGT--LSAGVIFVLPGLLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGVAAA 145 (624)
T ss_pred hhhHHHHHHHhhhcc--ccccEEEechhHHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCchhHH
Confidence 999999999999987 445677777763 67999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCccchhHHHHHHHHHHHhHhhcccchhhhcccc--cceehhccCCcceeeccccccCCCccccccc
Q 004424 204 SLFRALHEKERRPKGGLTRLQFFLLVFVSSFGYYIIPGYLFPSLSAL--SFVCLIWKDSITAQKLGSGQHGLGIGSFGLD 281 (754)
Q Consensus 204 ~l~~sLh~~~~~~~~~~sr~k~f~~~f~~~fv~~~~P~yi~p~L~~~--~~~~wi~p~~~~~~~i~Gg~~GlGl~~~tfD 281 (754)
+++++...++++. +..|...+.+..+.+|.++-+= ++.+ ++-+|++ .+. +..-++.|
T Consensus 146 EvL~~g~~~~gd~----~g~~~i~~g~~~~~~~~~l~~g----~~~~~~~~~~~~~----------~~~---~~~~lg~~ 204 (624)
T COG1297 146 EVLKAGNQREGDA----SGIKLIALGGALAALYSLLASG----LRVIASSLSAAFS----------VGR---AAFALGLG 204 (624)
T ss_pred HHHHhcCCCCCCc----ccchhhhhhhHHHHHHHHHhcc----ceeehhhHHHHHH----------hcc---hhhhhccc
Confidence 9999987444332 5667778888888888777541 1111 1222222 111 12224556
Q ss_pred ccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCccccccCCceeeceEeecCCCCccchhh
Q 004424 282 WSTVAGFLGSPLATPFFAIANILAGYFLFLYVLVPIAYWSNAFEAKKFPLFSSKTFDSDGQVYNITRILNDKAFDLNEIG 361 (754)
Q Consensus 282 ws~i~a~~gspl~~p~~~~~~~~~G~vl~~~ii~P~ly~~n~~~~~~~P~~s~~~fd~~g~~yn~s~il~~~~~~~~~~~ 361 (754)
.|+ +++|.+.++++.+.+-++.|.+++|++..|++-+...- | ++ .++-.++
T Consensus 205 ~S~--AliG~GylvGl~~~iaml~G~~iaWgvavP~~~~~~~~-----p--~~--------------------~~~~~~a 255 (624)
T COG1297 205 LSL--ALIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLTLIVPG-----P--SD--------------------QEAGVQA 255 (624)
T ss_pred ccH--HHhCceEEecchHHHHHHHHHHHHHHHHHHHHHhcccC-----C--Cc--------------------hhHHHHH
Confidence 666 68999999999999999999999999999988554321 1 11 0111111
Q ss_pred hhccC--CcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHhhccCCCChhhhhhhhccCCCchHHHHHH
Q 004424 362 YRNYS--KLYVSVIFAYIYGLSFATLMASISHVALFEGKTI-WEMWKKTAAAVNDKFGDVHTRLMKKNYEAVPQWWFQAI 438 (754)
Q Consensus 362 y~~~s--p~~~~~~~~~~~~~~fa~~~~~i~~~~l~~~k~i-~~i~~~~k~~~~~~~~D~h~~lm~~~y~~vP~ww~~~~ 438 (754)
.+-++ -+|++++.+. ..-.|+++...|.+ +.+.+.+++.+.+++...+ .|. .+|+|.-|-...
T Consensus 256 ~~vW~s~VrfIGaG~i~----------i~~~wtl~~l~~pi~~gi~~~f~~~r~~~~~~~~---~rt-e~Dl~~~~~~~~ 321 (624)
T COG1297 256 WKVWSSKVRFIGAGAIA----------IAAIWTLISLLGPILRGIKATFESARGRRRAGAV---SRT-ERDLPPKLVLLV 321 (624)
T ss_pred HHHhhheeEEeehhHHH----------HHHHHHHHHHHhHHHHHHHHHHHHhhcccccccc---cch-hhcCChhhHHHH
Confidence 11111 3688888763 22345555555522 2333334333211111111 134 688888776665
Q ss_pred HHHHHHHHhheehhcccc-------cchhhHHHHHHHHHHHHHHhhheeeEeeccCcc----hhHHHHHHhhhhcc----
Q 004424 439 LVLTFALSLYACEGFGKQ-------LQLPWWGLLLACGMAFFFTLPVGVIQATTNLQT----GLNVITELVIGYMY---- 503 (754)
Q Consensus 439 ~~~s~~~~i~~~~~~~~~-------~~lp~w~~ilal~la~v~~i~~~~~~g~T~~~~----~l~~i~qli~G~~~---- 503 (754)
++...+-..+...+.... ..+-.-+.+++++++|.++-.++++.|..|-+. ++++++.++.+.+.
T Consensus 322 ~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i~~v~~~~l~~l~~G 401 (624)
T COG1297 322 LLATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVTLLSLLILILG 401 (624)
T ss_pred HHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHHHHHHHHHHhc
Confidence 544433322223222111 122355777888889999999999988877663 66666666553332
Q ss_pred --------CCc----hhHHHHHHHHhhhhHHHhHHhhhhccchhccCCChHHHHHHHHHhHHHhHhHHHHHHHHHHhhcc
Q 004424 504 --------PGK----PLANVTFKTYGYISMSQALSFLGDFKLGHYMKVPPKSMFIVQLVGTLVASTAYFGTAWWLLTSID 571 (754)
Q Consensus 504 --------pG~----~~anm~~~~~~~~~~~qa~~~~~DlK~G~y~k~pPR~~f~~Q~iGtivg~~v~~~v~~~~l~~~~ 571 (754)
|.. ...+++.+++...++.++.|++||||+||++++.||+|+.+|++|+++++++...|++.+.. .+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~alvi~pvL~ll~~-aY 480 (624)
T COG1297 402 QSGGLFIDPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGALVIAPVLELLNK-AY 480 (624)
T ss_pred cccccccCcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHHHHHHHHH-Hh
Confidence 322 26778889999999999999999999999999999999999999999999999999986554 44
Q ss_pred cCCCCCCCCCCCCccccchhhhhhcceeeeeecCccccCCCCChhhHHHHHHHHHHHHHHHHHhhhhcCCcccccccchh
Q 004424 572 HICNPSLLPEGSPWTCPGDEVFYNASIIWGVVGPLRMFTNYGNYPQMNWFFLIGFLAPFPGWLLSRKFPEKKWIKNIHMP 651 (754)
Q Consensus 572 ~~~~~~ll~~~~~~tcp~~~~~~~~sv~wg~~gp~~~f~~~~~y~~~~~~fliG~~~pi~~~ll~r~~p~~~~~~~i~~p 651 (754)
++..+-.. +.....+|++. ..+++. +-.|+...+|.++..+.++|+.+....+.+++++ .+...|
T Consensus 481 gf~ga~~r-~~~~l~apqa~--lma~ia------~Gvf~~~lew~mi~~g~~~gi~lI~id~~l~~~~------~~~~lp 545 (624)
T COG1297 481 GFAGAPPR-QGMDLAAPQAT--LMATIA------KGVFTGNLEWSMILAGAGIGIVLIGIDERLKGRG------GKLRLP 545 (624)
T ss_pred CcCCCCCC-CCCCCcchHHH--HHHHHh------cccCCCCcchHHHHHHHhHhheeeeccHHHhcCC------cccccc
Confidence 44321100 22225556543 334443 4467777778888777778887777777665432 234578
Q ss_pred HHhhhcccccCccchhchHHHHHHHHHHHHHHhcC-------ccccchhhHHHhHhhhhhhHHHHHHHHHHHHhCCC
Q 004424 652 ILLGGPLNLPSAKAVNYTSWAAVGIFFNYYVFRRY-------KGWWARHNYILSAALDAGVAFMAIMIYFALQSNDI 721 (754)
Q Consensus 652 ~~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~-------~~w~~kynyvlaagL~~G~~i~~iii~~a~~~~g~ 721 (754)
+++.|++.+.|. .+++.+++|.+..|.+.|++ .+--++..+++||||+.||+|+++++.+..-.+|.
T Consensus 546 vlAvGvGIylP~---s~~ipi~vG~~l~~~v~~~~~~~~~~~~e~~~r~gvl~aaGLIvGEsL~gvi~a~ii~~~g~ 619 (624)
T COG1297 546 VLAVGVGIYLPP---SLTIPIFVGGVLRWAVDRKLKKGDERYKERAKRIGVLFAAGLIVGESLFGVITALIIVGSGK 619 (624)
T ss_pred ceeeeeeeecCh---hhchHHHHHHHHHHHHHHhcccccchhhhcccceeEEEeeccccchHHHHHHHHHHheecCC
Confidence 899999988553 24677889998888887762 23345678999999999999999999766655554
No 7
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=91.45 E-value=5.6 Score=47.73 Aligned_cols=207 Identities=15% Similarity=0.104 Sum_probs=107.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhcc---cccc--ccchhhHHHHHHHHHHHHHHHhcCCCccccCCcccccccCCCCC
Q 004424 51 PVLTFRTWILGITSCGLLAFVNQFFGY---RQNQ--LSVGSVSAQILVLPIGKLMAATLPTKQMRVPFTKWSFSLNPGPF 125 (754)
Q Consensus 51 p~lT~Ra~~lG~~l~~i~~~~n~~f~l---r~~~--~~~~s~~~~ll~~~ig~~~a~~lP~~~~~~~g~~~~~~lNPgpf 125 (754)
++..-+.++.+++++.+.+..-....+ +.++ ..++-.++.+++.+.++..+.. + .||.
T Consensus 352 ~~vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t---------~------~~P~-- 414 (624)
T PF03169_consen 352 KEVPMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGET---------G------INPV-- 414 (624)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhc---------C------CCcc--
Confidence 445667777777777777666665555 4444 4455555555666666555432 1 2331
Q ss_pred Cccchhheeecccccc----------------cchhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhHHHHhhccccc-
Q 004424 126 NLKEHVLITIFAGCGA----------------SGVYAVNIITIVKAFYNRSLHPVAAMLLVQTTQLLGYGWAGIFRKYL- 188 (754)
Q Consensus 126 ~~kE~~~i~~~Asaa~----------------~~~~a~~~i~~~~~~y~~~~~~~~~il~~ls~q~lG~~~Ag~lR~~l- 188 (754)
+.- +.+.|++..... ...-+.++..-++.=|-.+.++..+..--+...++|...+...-+.+
T Consensus 415 ~~~-~~~sqli~g~~~pg~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~~ 493 (624)
T PF03169_consen 415 SGL-NILSQLIFGLLLPGNPIANLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLLN 493 (624)
T ss_pred hhh-hHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 222233222111 11122233333333232455666666666666666666665443333
Q ss_pred ----cc-----cCCCcCcchHHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhHhhcccchhhhcccccceehhccC
Q 004424 189 ----VD-----SPYMWWPSNLVQVSLFRALHEKERRPKGGLTRLQFFLLVFVSSFGYYIIPGYLFPSLSALSFVCLIWKD 259 (754)
Q Consensus 189 ----V~-----p~~l~~Ps~lata~l~~sLh~~~~~~~~~~sr~k~f~~~f~~~fv~~~~P~yi~p~L~~~~~~~wi~p~ 259 (754)
+. ..++.=|+....+++.+.+-++.++ .+++.+.+++.+.++-.++ .++. + .+ .|+
T Consensus 494 ~~~~~~~~~~~~~~~~ap~a~~~aav~~g~~~~~~~-----~~~~~~~~~~~~G~~~~i~-~~l~---~--~~----~P~ 558 (624)
T PF03169_consen 494 QAYPCGPDQGDSFSCPAPQAFAWAAVAWGLIGPQRG-----LPYSALPWGFLIGAVLPIL-FWLL---Q--RK----FPS 558 (624)
T ss_pred HhhccCccccccCcCcchHHHHHHHHHHHhcCCccc-----chHHHHHHHHHHHHHHHHH-HHHH---H--hh----CCh
Confidence 33 3455667778888888888765331 4667777777666665332 2221 0 01 133
Q ss_pred CcceeeccccccCCCcccccccccccccccCCcccccHHHHHHHHHHHHHHHH
Q 004424 260 SITAQKLGSGQHGLGIGSFGLDWSTVAGFLGSPLATPFFAIANILAGYFLFLY 312 (754)
Q Consensus 260 ~~~~~~i~Gg~~GlGl~~~tfDws~i~a~~gspl~~p~~~~~~~~~G~vl~~~ 312 (754)
. ..+||.. .-|++.|......+++|.++.++
T Consensus 559 ~----~~~~~~~------------------~~~~~~~~~~~~~~~iG~~~~~~ 589 (624)
T PF03169_consen 559 P----LAFGGAS------------------SIGFYLPSNYTSAIFIGGLFQFY 589 (624)
T ss_pred h----heeeecc------------------cccccchhHHHHHHHHHHHHHHH
Confidence 2 1122211 14677888888888888877653
No 8
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=61.37 E-value=57 Score=36.11 Aligned_cols=160 Identities=15% Similarity=0.258 Sum_probs=79.6
Q ss_pred HHHHHHhhcccHHHHHHHHHHhhccCCCChhhhhhhhccCCCchHHHHHHHHHHHHHHhheehhcccccchhhHHHHHHH
Q 004424 389 ISHVALFEGKTIWEMWKKTAAAVNDKFGDVHTRLMKKNYEAVPQWWFQAILVLTFALSLYACEGFGKQLQLPWWGLLLAC 468 (754)
Q Consensus 389 i~~~~l~~~k~i~~i~~~~k~~~~~~~~D~h~~lm~~~y~~vP~ww~~~~~~~s~~~~i~~~~~~~~~~~lp~w~~ilal 468 (754)
++..++.+++ ++++..++...++.++..++..++-.+.+-.+..+-. +++++.++.+...+. -.++|. +.++++
T Consensus 167 ~~ff~L~d~~---~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~y~~gq~-i~al~~gi~~~igl~-ilgvp~-alllgi 240 (355)
T COG0628 167 LLFFLLLDGE---RLRRKLIKLLPRKLRKRARRILSEVNATLSGYLRGQV-LVALIVGILTGIGLL-ILGVPY-ALLLGL 240 (355)
T ss_pred HHHHHHcCHH---HHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHcccH-HHHHHH
Confidence 3344566677 6666665432222222222221110233444444333 344444443322211 123432 334444
Q ss_pred HHHHHHHhhheeeEeeccCcchhHHHHHHhhhhccCCchhHHHHHHHHhhhhHHHh-HHhhhhccchhccCCChHHHHHH
Q 004424 469 GMAFFFTLPVGVIQATTNLQTGLNVITELVIGYMYPGKPLANVTFKTYGYISMSQA-LSFLGDFKLGHYMKVPPKSMFIV 547 (754)
Q Consensus 469 ~la~v~~i~~~~~~g~T~~~~~l~~i~qli~G~~~pG~~~anm~~~~~~~~~~~qa-~~~~~DlK~G~y~k~pPR~~f~~ 547 (754)
+.++.-.+|. ..+.+..+--.+.++...| +. -...-.+++....|- .++++-.=+|+-+|++|=..+.+
T Consensus 241 l~g~~~lIP~--------iG~~i~~ip~~i~al~~~~-~~-~~l~~~~~~~vi~~i~~n~l~P~l~g~~~~l~p~~ilis 310 (355)
T COG0628 241 LAGLLSLIPY--------IGPVIGLIPAVIIALLQGG-PW-GALLVLIVFLVIQQIEGNILRPKLMGKRLGLHPLVILLS 310 (355)
T ss_pred HHHHHHhhcc--------cccHHHHHHHHHHHHHhcc-hH-HHHHHHHHHHHHHHHhcceeccccccccCCCCHHHHHHH
Confidence 4433333331 1123444555555666555 32 233344444455444 45578888999999999999999
Q ss_pred HHHhH----HHhHhHHHHHHH
Q 004424 548 QLVGT----LVASTAYFGTAW 564 (754)
Q Consensus 548 Q~iGt----ivg~~v~~~v~~ 564 (754)
.+.|. ++|.++++.++-
T Consensus 311 ll~g~~l~G~~G~ila~pl~~ 331 (355)
T COG0628 311 LLGGGSLFGFVGLILAPPLAA 331 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 99877 455555655553
No 9
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=49.09 E-value=5.5e+02 Score=30.88 Aligned_cols=108 Identities=11% Similarity=0.063 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHHHHHHhhheeeEeeccCcchhHHHHHH----hhhhccCCchhHHHHHHHHhhhhHHHhHHhhhhc---
Q 004424 459 LPWWGLLLACGMAFFFTLPVGVIQATTNLQTGLNVITEL----VIGYMYPGKPLANVTFKTYGYISMSQALSFLGDF--- 531 (754)
Q Consensus 459 lp~w~~ilal~la~v~~i~~~~~~g~T~~~~~l~~i~ql----i~G~~~pG~~~anm~~~~~~~~~~~qa~~~~~Dl--- 531 (754)
+.+-++++.++++.+++..+.|+-=.+|..+..++.+-+ +.-.+.+.++.-|.+..+.+..+.+.+. +..-+
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~~t~~EnnivQT~asA~~~~ag-~~~~lPAl 80 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRDRSILENNMVQTAASAAGTLSS-VIFVLPAL 80 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345567777777777777777777777777654443333 3333344566666666555544444332 21111
Q ss_pred -cchhccCCChHHHHHHHHHhHHHhHhHHHHHHHHHH
Q 004424 532 -KLGHYMKVPPKSMFIVQLVGTLVASTAYFGTAWWLL 567 (754)
Q Consensus 532 -K~G~y~k~pPR~~f~~Q~iGtivg~~v~~~v~~~~l 567 (754)
.+|+.-..|...+...=+.|.++|.+.....-+.++
T Consensus 81 ~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I 117 (591)
T TIGR00733 81 LMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFV 117 (591)
T ss_pred HhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 233332346566666777889999998888665443
No 10
>PRK10983 putative inner membrane protein; Provisional
Probab=43.39 E-value=5.2e+02 Score=28.98 Aligned_cols=44 Identities=5% Similarity=-0.087 Sum_probs=32.1
Q ss_pred hHHHhHHhhhhccchhccCCChHHHHHHHHHhHH----HhHhHHHHHH
Q 004424 520 SMSQALSFLGDFKLGHYMKVPPKSMFIVQLVGTL----VASTAYFGTA 563 (754)
Q Consensus 520 ~~~qa~~~~~DlK~G~y~k~pPR~~f~~Q~iGti----vg~~v~~~v~ 563 (754)
...+..+.++-.=+|.-+++||=..+.+.+.|.. +|.++.+.++
T Consensus 287 vv~~idnil~P~l~g~~~~l~~~~il~~~~~G~~~fG~~G~~lgp~i~ 334 (368)
T PRK10983 287 VVGTLDNVIRPMLIRMGADLPMILILSGVIGGLIAFGMIGLFIGPVVL 334 (368)
T ss_pred HHHHhhheeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778888999999999999999888875 3444444444
No 11
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=41.16 E-value=3.8e+02 Score=28.86 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=37.6
Q ss_pred HHHHHHhhhhHHHhH-HhhhhccchhccCCChHHHHHHHHHhHH----HhHhHHHHHHHH
Q 004424 511 VTFKTYGYISMSQAL-SFLGDFKLGHYMKVPPKSMFIVQLVGTL----VASTAYFGTAWW 565 (754)
Q Consensus 511 m~~~~~~~~~~~qa~-~~~~DlK~G~y~k~pPR~~f~~Q~iGti----vg~~v~~~v~~~ 565 (754)
.....+.....+|-. +.++-.=.|+-+|+||=..+.+.++|.. +|.++++.++..
T Consensus 259 ~~~~~~~~~~i~~~~~~il~P~i~g~~~~i~p~~~l~~~~~g~~~fG~~G~il~~pi~~~ 318 (327)
T PF01594_consen 259 ALIVLIVFIVIQQLEDNILRPKIMGRSLGIHPLLILLAVIIGGYLFGFIGLILAPPILAV 318 (327)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhcccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 334444555555544 4456566799999999999999999874 466666666543
No 12
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=39.61 E-value=2.1e+02 Score=31.02 Aligned_cols=40 Identities=10% Similarity=-0.002 Sum_probs=30.8
Q ss_pred hHHhhhhccchhccCCChHHHHHHHHHhHH----HhHhHHHHHH
Q 004424 524 ALSFLGDFKLGHYMKVPPKSMFIVQLVGTL----VASTAYFGTA 563 (754)
Q Consensus 524 a~~~~~DlK~G~y~k~pPR~~f~~Q~iGti----vg~~v~~~v~ 563 (754)
-.+.++-.=+|.-++++|=.++.+.++|.. +|.++.+.++
T Consensus 286 ~~~~l~P~i~g~~~~l~p~~vl~~~l~g~~~~G~~G~~l~~~~~ 329 (341)
T TIGR02872 286 LRQILEPKVVSSSIGLHPLATLISMYIGLKLFGFLGLIFGPVIV 329 (341)
T ss_pred HHHhHhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777999999999999999998874 4555665554
No 13
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=38.92 E-value=1e+02 Score=37.37 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=14.3
Q ss_pred cCCcccccHHHHHHHH----HHHHHH
Q 004424 289 LGSPLATPFFAIANIL----AGYFLF 310 (754)
Q Consensus 289 ~gspl~~p~~~~~~~~----~G~vl~ 310 (754)
+|.++..|....++++ +|.++.
T Consensus 588 ~~~~~~lp~~~~~~~~~~~~vG~~~~ 613 (654)
T TIGR00728 588 VGGGGYIPPATAVNYSTWAAVGGFFN 613 (654)
T ss_pred hhhhhccCCcchhhhhHHHHHHHHHH
Confidence 4566777777777777 554444
No 14
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=38.38 E-value=3.1e+02 Score=30.28 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=36.1
Q ss_pred HhhhhHHHh-HHhhhhccchhccCCChHHHHHHHHHhH----HHhHhHHHHHH
Q 004424 516 YGYISMSQA-LSFLGDFKLGHYMKVPPKSMFIVQLVGT----LVASTAYFGTA 563 (754)
Q Consensus 516 ~~~~~~~qa-~~~~~DlK~G~y~k~pPR~~f~~Q~iGt----ivg~~v~~~v~ 563 (754)
+.+....|. .+.++-.=+|+-++++|=..+.+.++|. ++|.+++++++
T Consensus 266 i~~~iiq~i~~nvi~P~i~g~~v~l~P~~vllsil~gg~l~G~~G~ilavPl~ 318 (344)
T PRK12287 266 AGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLT 318 (344)
T ss_pred HHHHHHHHHHhcchhhhhhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 445555555 5667778899999999999999999887 45556666665
No 15
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=29.86 E-value=1.5e+02 Score=37.16 Aligned_cols=37 Identities=8% Similarity=0.023 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccCCcccccccCCCCCCccchhheeeccccccc
Q 004424 88 SAQILVLPIGKLMAATLPTKQMRVPFTKWSFSLNPGPFNLKEHVLITIFAGCGAS 142 (754)
Q Consensus 88 ~~~ll~~~ig~~~a~~lP~~~~~~~g~~~~~~lNPgpf~~kE~~~i~~~Asaa~~ 142 (754)
.+.+++|.+.....++ | .-+++.|.++-.+..+.+.+
T Consensus 944 wIsi~SyilV~~at~I---------G---------~vlGIse~VmGlTfLA~GTS 980 (1096)
T TIGR00927 944 WIAMFSYLMVWWAHQV---------G---------ETIGISEEIMGLTILAAGTS 980 (1096)
T ss_pred HHHHHHHHHHHHHHHh---------h---------hhcCCChhhhhhhhhhhhcc
Confidence 4666777766655432 2 24567787766555555444
No 16
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=29.79 E-value=9.2e+02 Score=29.57 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=18.7
Q ss_pred CCchHHHHHHHHHHHHHHhheehhc
Q 004424 429 AVPQWWFQAILVLTFALSLYACEGF 453 (754)
Q Consensus 429 ~vP~ww~~~~~~~s~~~~i~~~~~~ 453 (754)
++|.|-+...+++++++.+-....+
T Consensus 420 ~lP~W~~~lal~l~~i~~iP~~~i~ 444 (681)
T TIGR00727 420 ETPVWGLFVCLIFNFVFLIPTTILQ 444 (681)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhheE
Confidence 7899988888888887766555444
No 17
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=29.56 E-value=70 Score=22.65 Aligned_cols=18 Identities=28% Similarity=0.599 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004424 57 TWILGITSCGLLAFVNQF 74 (754)
Q Consensus 57 a~~lG~~l~~i~~~~n~~ 74 (754)
+|++|+.+++..+.+|..
T Consensus 5 aWilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAM 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999988863
No 18
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=29.16 E-value=2.1e+02 Score=28.07 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=22.7
Q ss_pred HHHHHHHHHhH-HHhHhHHHHHHHHHHh
Q 004424 542 KSMFIVQLVGT-LVASTAYFGTAWWLLT 568 (754)
Q Consensus 542 R~~f~~Q~iGt-ivg~~v~~~v~~~~l~ 568 (754)
..-..++++|| ++|+++++.++.+++.
T Consensus 90 ~~a~lGEviGTGiIGal~sypva~~~~g 117 (150)
T PF09512_consen 90 WAAALGEVIGTGIIGALLSYPVAKLFMG 117 (150)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 45578899999 6999999999988773
No 19
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=27.02 E-value=84 Score=21.92 Aligned_cols=18 Identities=28% Similarity=0.684 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004424 57 TWILGITSCGLLAFVNQF 74 (754)
Q Consensus 57 a~~lG~~l~~i~~~~n~~ 74 (754)
+|++|+++++..+.+|..
T Consensus 5 aWilG~~lA~~~~i~~a~ 22 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAM 22 (28)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 699999999999988863
No 20
>PRK14749 hypothetical protein; Provisional
Probab=26.39 E-value=88 Score=22.03 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004424 57 TWILGITSCGLLAFVNQF 74 (754)
Q Consensus 57 a~~lG~~l~~i~~~~n~~ 74 (754)
+|++|+++++..+.+|..
T Consensus 5 aWiLG~~lAc~f~ilna~ 22 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLV 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999988863
No 21
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=25.86 E-value=2.4e+02 Score=32.65 Aligned_cols=91 Identities=14% Similarity=0.181 Sum_probs=42.6
Q ss_pred CchHHHHHHHHHHHHHHhhe-ehhcccccchhhHHHHHHHHHHHHHHhhheeeEeeccCcchhHHHHHHhhhhccCCchh
Q 004424 430 VPQWWFQAILVLTFALSLYA-CEGFGKQLQLPWWGLLLACGMAFFFTLPVGVIQATTNLQTGLNVITELVIGYMYPGKPL 508 (754)
Q Consensus 430 vP~ww~~~~~~~s~~~~i~~-~~~~~~~~~lp~w~~ilal~la~v~~i~~~~~~g~T~~~~~l~~i~qli~G~~~pG~~~ 508 (754)
.++++|....++.+++-+.. ... -.+..|+. --...+.++.++..+.+...++.++ +..++-.+ +-.
T Consensus 251 ~~~~~~~~~~~l~~~~li~g~~~~---~~~~~~~~-~~~~~~fl~~~ii~~~i~~~~~~~~--~~~~~~F~------~G~ 318 (465)
T PF03606_consen 251 KRPKLYLLLPVLPFVLLIYGFSFV---IIKIKWYF-PEIAALFLIIGIIIGLIRHRSGKSP--NEIVKAFF------KGM 318 (465)
T ss_pred cccceeehHHHHHHHHHHhchhhh---hccccccH-HHHHHHHHHHHHHHHHHHhhccCCH--hHHHHHHH------HHH
Confidence 46778888888887765442 111 12223332 2222333344444444443444443 22222222 224
Q ss_pred HHHHHHHHhhhhHHHhHHhhhhcc
Q 004424 509 ANVTFKTYGYISMSQALSFLGDFK 532 (754)
Q Consensus 509 anm~~~~~~~~~~~qa~~~~~DlK 532 (754)
++++..+....-+.-+.-+++|.|
T Consensus 319 ~~~~~~a~vVgla~ai~v~~~~~~ 342 (465)
T PF03606_consen 319 GDMLSFALVVGLARAISVFMEGGK 342 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc
Confidence 455444444445555556666665
No 22
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=22.34 E-value=4.5e+02 Score=29.60 Aligned_cols=81 Identities=9% Similarity=0.189 Sum_probs=41.7
Q ss_pred HHHHHHHHhHHHhHhHHHHHHHHHHhhcccCCCCCCCCCCCCccccchhhhhhcceeeeeecCccccCCCCChhhHHHHH
Q 004424 543 SMFIVQLVGTLVASTAYFGTAWWLLTSIDHICNPSLLPEGSPWTCPGDEVFYNASIIWGVVGPLRMFTNYGNYPQMNWFF 622 (754)
Q Consensus 543 ~~f~~Q~iGtivg~~v~~~v~~~~l~~~~~~~~~~ll~~~~~~tcp~~~~~~~~sv~wg~~gp~~~f~~~~~y~~~~~~f 622 (754)
..|.++++=..+|+++-.++- +-+++.+.-+.+ ... ....++.+++ -+| +++.+. .-. ..+.-
T Consensus 255 ~~~~~~viIg~LGAimDvais--IaSsi~El~e~n-----~~~---t~~~lfksgm---nIG-~DimGT--m~N-TL~la 317 (385)
T COG5438 255 GLFLAGVIIGSLGAIMDVAIS--IASSINELHEQN-----PNI---TVKELFKSGM---NIG-QDIMGT--MTN-TLLLA 317 (385)
T ss_pred hhHHHHHHHHHHHHHHHHHHH--HHHhHHHHHhcC-----CCc---cHHHHHHHHh---hhh-HHHHHH--HHH-HHHHH
Confidence 478888888888888877664 334444432211 111 1112222222 233 333321 111 22333
Q ss_pred HHHHHHHHHHHHhhhhcC
Q 004424 623 LIGFLAPFPGWLLSRKFP 640 (754)
Q Consensus 623 liG~~~pi~~~ll~r~~p 640 (754)
.+|..+|+..|+.+..+|
T Consensus 318 y~g~al~l~i~~~~~~~~ 335 (385)
T COG5438 318 YLGGALPLLILFLRNNYS 335 (385)
T ss_pred HHHhhHHHHHHHHHcCCc
Confidence 467778899888876665
No 23
>PF12014 DUF3506: Domain of unknown function (DUF3506); InterPro: IPR021894 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 131 to 148 amino acids in length. This domain has a conserved KLTGD sequence motif.
Probab=21.57 E-value=45 Score=31.91 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=21.1
Q ss_pred CCCchhhhhccCCCCCCCCCC--cchHHHH
Q 004424 31 NDNPIEEVRLTVPITDDPSQP--VLTFRTW 58 (754)
Q Consensus 31 ~~sp~~evr~~v~~~Ddp~~p--~lT~Ra~ 58 (754)
++..|.|--..+-++.||+.| +.||||=
T Consensus 57 ~~~~~~~~leAiKLTGDpNVPrGevtF~A~ 86 (134)
T PF12014_consen 57 SDREFRGRLEAIKLTGDPNVPRGEVTFRAD 86 (134)
T ss_pred ccccccceEEEEEecCCCCCcCccEEEEec
Confidence 344455555677899999999 7999983
Done!