Query 004424
Match_columns 754
No_of_seqs 156 out of 1086
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 00:48:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l8s_A Integrin alpha-1; trans 16.8 2.2E+02 0.0075 21.9 4.9 39 290-328 2-40 (54)
2 2jwa_A Receptor tyrosine-prote 9.0 1.8E+02 0.0061 21.5 2.2 19 670-688 23-41 (44)
3 2l2t_A Receptor tyrosine-prote 8.8 2.2E+02 0.0075 21.0 2.6 17 672-688 24-40 (44)
4 2ks1_B Epidermal growth factor 8.7 2.3E+02 0.0077 20.9 2.6 16 673-688 26-41 (44)
5 4djk_A Probable glutamate/gamm 7.3 4.4E+02 0.015 28.4 5.6 51 511-563 207-257 (511)
6 2knc_A Integrin alpha-IIB; tra 6.8 8.2E+02 0.028 18.7 5.1 40 292-331 7-46 (54)
7 1v54_K IHQ, cytochrome C oxida 6.7 4.7E+02 0.016 20.0 3.6 36 683-721 3-38 (56)
8 1iij_A ERBB-2 receptor protein 6.4 95 0.0032 21.8 -0.3 17 670-686 19-35 (35)
9 3iyz_A Aquaporin-4; water tran 5.8 2.1E+03 0.073 22.4 12.3 20 539-558 171-190 (340)
10 2y69_K Cytochrome C oxidase po 5.5 5.5E+02 0.019 21.1 3.6 35 684-721 28-62 (80)
No 1
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=16.81 E-value=2.2e+02 Score=21.93 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=24.5
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 004424 290 GSPLATPFFAIANILAGYFLFLYVLVPIAYWSNAFEAKK 328 (754)
Q Consensus 290 gspl~~p~~~~~~~~~G~vl~~~ii~P~ly~~n~~~~~~ 328 (754)
|.|--+|+|..+-..+|.++-..++.-++|.-|.+..++
T Consensus 2 ~~~~~vp~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 2 GLPGRVPLWVILLSAFAGLLLLMLLILALWKIGFFKRPL 40 (54)
T ss_dssp CCCCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCccCchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 556668888765555554444455555888888765443
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=9.05 E-value=1.8e+02 Score=21.48 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhcCcc
Q 004424 670 SWAAVGIFFNYYVFRRYKG 688 (754)
Q Consensus 670 ~~~~vG~~~~~~~rr~~~~ 688 (754)
..++++..+..|+|||+-+
T Consensus 23 l~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhheehhhhh
Confidence 4557777888899998754
No 3
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=8.84 E-value=2.2e+02 Score=20.96 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhcCcc
Q 004424 672 AAVGIFFNYYVFRRYKG 688 (754)
Q Consensus 672 ~~vG~~~~~~~rr~~~~ 688 (754)
.+++....+|+|||+.+
T Consensus 24 ~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 24 VIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 34556667788887654
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=8.66 E-value=2.3e+02 Score=20.86 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhcCcc
Q 004424 673 AVGIFFNYYVFRRYKG 688 (754)
Q Consensus 673 ~vG~~~~~~~rr~~~~ 688 (754)
+++....+|+|||+.+
T Consensus 26 ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 26 VVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhhhHhh
Confidence 4556667888887654
No 5
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=7.28 E-value=4.4e+02 Score=28.42 Aligned_cols=51 Identities=10% Similarity=0.184 Sum_probs=32.1
Q ss_pred HHHHHHhhhhHHHhHHhhhhccchhccCCChHHHHHHHHHhHHHhHhHHHHHH
Q 004424 511 VTFKTYGYISMSQALSFLGDFKLGHYMKVPPKSMFIVQLVGTLVASTAYFGTA 563 (754)
Q Consensus 511 m~~~~~~~~~~~qa~~~~~DlK~G~y~k~pPR~~f~~Q~iGtivg~~v~~~v~ 563 (754)
+....+++.....+..+..|.|=-+ |.=||++..+-++.+++..+++..+.
T Consensus 207 ~~~~~~a~~G~e~~~~~a~E~k~P~--k~ip~ai~~~~~~~~~~y~~~~~~~~ 257 (511)
T 4djk_A 207 FVAFILSYMGVEASATHVNEMSNPG--RDYPLAMLLLMVAAICLSSVGGLSIA 257 (511)
T ss_dssp HHHHHHHHTTGGGGTGGGSSSSCCT--TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhccCcc--cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666677777777777332 45577777777776666666655543
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=6.83 E-value=8.2e+02 Score=18.68 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=24.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCC
Q 004424 292 PLATPFFAIANILAGYFLFLYVLVPIAYWSNAFEAKKFPL 331 (754)
Q Consensus 292 pl~~p~~~~~~~~~G~vl~~~ii~P~ly~~n~~~~~~~P~ 331 (754)
+--+|+|..+-..+|.++-..++.-++|.-|.+..++-|.
T Consensus 7 ~~~vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~~~~ 46 (54)
T 2knc_A 7 ERAIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRPPL 46 (54)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSC
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCCCc
Confidence 3347888765554444444455555888888876555443
No 7
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=6.70 E-value=4.7e+02 Score=20.02 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=24.0
Q ss_pred HhcCccccchhhHHHhHhhhhhhHHHHHHHHHHHHhCCC
Q 004424 683 FRRYKGWWARHNYILSAALDAGVAFMAIMIYFALQSNDI 721 (754)
Q Consensus 683 rr~~~~w~~kynyvlaagL~~G~~i~~iii~~a~~~~g~ 721 (754)
+|+.|...+||.-.+ |.+|..++..+-.+.++-.|+
T Consensus 3 ~k~~p~FHdKYGn~~---L~~Ga~FC~a~W~y~~TQ~GI 38 (56)
T 1v54_K 3 QKRAPDFHDKYGNAV---LASGATFCVAVWVYMATQIGI 38 (56)
T ss_dssp ---CCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHSCC
T ss_pred cccCcchhhhcCcee---eecchhhhHhhHhhhheeece
Confidence 456677788996443 566778887777777777776
No 8
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=6.40 E-value=95 Score=21.80 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhcC
Q 004424 670 SWAAVGIFFNYYVFRRY 686 (754)
Q Consensus 670 ~~~~vG~~~~~~~rr~~ 686 (754)
..++++..+..|+|||+
T Consensus 19 l~vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 19 LFLILVVVVGILIKRRR 35 (35)
T ss_dssp HHHHHTTTTTHHHHHCC
T ss_pred HHHHHHHHhheEEeecC
Confidence 34566666777888875
No 9
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=5.85 E-value=2.1e+03 Score=22.45 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=13.4
Q ss_pred CChHHHHHHHHHhHHHhHhH
Q 004424 539 VPPKSMFIVQLVGTLVASTA 558 (754)
Q Consensus 539 ~pPR~~f~~Q~iGtivg~~v 558 (754)
++.-..|..|+++|++=.++
T Consensus 171 ~s~~~~f~~E~i~Tf~Lv~~ 190 (340)
T 3iyz_A 171 LTAGHGLLVELIITFQLVFT 190 (340)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 34556788888888764443
No 10
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=5.50 E-value=5.5e+02 Score=21.13 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=25.0
Q ss_pred hcCccccchhhHHHhHhhhhhhHHHHHHHHHHHHhCCC
Q 004424 684 RRYKGWWARHNYILSAALDAGVAFMAIMIYFALQSNDI 721 (754)
Q Consensus 684 r~~~~w~~kynyvlaagL~~G~~i~~iii~~a~~~~g~ 721 (754)
|+-|...+||.-.+ |.+|..++..+-.+.++-.|+
T Consensus 28 k~~pdFHdKYGn~~---L~~Ga~FC~a~W~y~~TQ~GI 62 (80)
T 2y69_K 28 KRAPDFHDKYGNAV---LASGATFCVAVWVYMATQIGI 62 (80)
T ss_dssp --CCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHSCC
T ss_pred cCCCchhhhcCcee---eecchhHHHhhHHHhheecce
Confidence 45677789996543 567888888888777777777
Done!