Query 004424
Match_columns 754
No_of_seqs 156 out of 1086
Neff 6.8
Searched_HMMs 13730
Date Tue Mar 26 00:48:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004424.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004424hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ymga1 f.19.1.1 (A:6-239) Aqu 5.1 9E+02 0.066 21.0 9.1 18 546-563 86-103 (234)
2 d1q90l_ f.23.24.1 (L:) PetL su 4.5 2.3E+02 0.017 17.1 2.2 23 54-77 3-25 (32)
3 d1hvwa_ g.3.6.2 (A:) Atracotox 3.8 1.2E+02 0.0086 17.6 0.3 14 121-136 6-19 (26)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 3.6 3.4E+02 0.024 17.3 2.5 15 461-475 18-32 (37)
5 d1zava1 d.58.62.1 (A:1-177) Ri 3.3 3E+02 0.022 23.6 2.9 28 533-560 128-155 (177)
6 d1q90m_ f.23.25.1 (M:) PetM su 3.0 4.1E+02 0.03 16.3 2.4 14 699-712 2-15 (34)
7 d2axtt1 f.23.34.1 (T:1-30) Pho 2.4 6.7E+02 0.049 14.8 3.2 20 376-395 4-23 (30)
8 d1h2sa_ f.13.1.1 (A:) Sensory 2.2 6E+02 0.044 22.3 3.8 28 670-697 13-40 (225)
9 d1gvda_ a.4.1.3 (A:) c-Myb, DN 2.2 2.5E+02 0.018 19.1 0.6 9 123-131 4-12 (52)
10 d1v54l_ f.23.6.1 (L:) Mitochon 2.2 5E+02 0.036 17.4 2.2 13 172-184 24-36 (46)
No 1
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.06 E-value=9e+02 Score=20.99 Aligned_cols=18 Identities=17% Similarity=0.541 Sum_probs=15.0
Q ss_pred HHHHHhHHHhHhHHHHHH
Q 004424 546 IVQLVGTLVASTAYFGTA 563 (754)
Q Consensus 546 ~~Q~iGtivg~~v~~~v~ 563 (754)
.+|++|.++|+.+.+.++
T Consensus 86 ~aQ~lGa~~ga~l~~~~~ 103 (234)
T d1ymga1 86 VAQLLGAVAGAAVLYSVT 103 (234)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred ehHHHHHHHHHHHHHHHc
Confidence 689999999998876654
No 2
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.50 E-value=2.3e+02 Score=17.15 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcc
Q 004424 54 TFRTWILGITSCGLLAFVNQFFGY 77 (754)
Q Consensus 54 T~Ra~~lG~~l~~i~~~~n~~f~l 77 (754)
|+-+ -+|+++++++-....|+|+
T Consensus 3 ti~s-yvglligal~~tlgiylgl 25 (32)
T d1q90l_ 3 TITS-YVGLLIGALVFTLGIYLGL 25 (32)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred ehHH-HHHHHHHHHHHHHHHHHHH
Confidence 4444 3688888888888888775
No 3
>d1hvwa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=3.75 E-value=1.2e+02 Score=17.64 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=10.5
Q ss_pred CCCCCCccchhheeec
Q 004424 121 NPGPFNLKEHVLITIF 136 (754)
Q Consensus 121 NPgpf~~kE~~~i~~~ 136 (754)
.|.|+| ||.+.|.+
T Consensus 6 qpcpyn--enccsqsc 19 (26)
T d1hvwa_ 6 QPCPYN--ENCCSQSC 19 (26)
T ss_dssp SBCSST--TSBSSCCE
T ss_pred CcCCCC--cccccccc
Confidence 367777 99988865
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.56 E-value=3.4e+02 Score=17.26 Aligned_cols=15 Identities=40% Similarity=0.758 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHH
Q 004424 461 WWGLLLACGMAFFFT 475 (754)
Q Consensus 461 ~w~~ilal~la~v~~ 475 (754)
.|++++..+++.+|+
T Consensus 18 y~GlLlifvl~vLFs 32 (37)
T d2axtl1 18 YLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555443
No 5
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=3.31 E-value=3e+02 Score=23.57 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=22.9
Q ss_pred chhccCCChHHHHHHHHHhHHHhHhHHH
Q 004424 533 LGHYMKVPPKSMFIVQLVGTLVASTAYF 560 (754)
Q Consensus 533 ~G~y~k~pPR~~f~~Q~iGtivg~~v~~ 560 (754)
+-.+.++|.|...++|++|.+-+..-+.
T Consensus 128 i~~la~LPs~eel~a~l~~~L~ap~~~l 155 (177)
T d1zava1 128 VENIAKLPSKEELYAMLVGRVKAPITGL 155 (177)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhHHHHH
Confidence 4567889999999999999988766543
No 6
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.98 E-value=4.1e+02 Score=16.26 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=9.6
Q ss_pred HhhhhhhHHHHHHH
Q 004424 699 AALDAGVAFMAIMI 712 (754)
Q Consensus 699 agL~~G~~i~~iii 712 (754)
|++++|+++..+=+
T Consensus 2 a~fiagta~tmig~ 15 (34)
T d1q90m_ 2 AEFIAGTALTMVGM 15 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CceecchhHHHHHH
Confidence 57888888765443
No 7
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.35 E-value=6.7e+02 Score=14.77 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 004424 376 YIYGLSFATLMASISHVALF 395 (754)
Q Consensus 376 ~~~~~~fa~~~~~i~~~~l~ 395 (754)
+.|..-||++.+.....+.+
T Consensus 4 i~yv~ifac~i~lfffaiff 23 (30)
T d2axtt1 4 ITYVFIFACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHHHHHHHh
Confidence 35667788887766554443
No 8
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=2.21 E-value=6e+02 Score=22.31 Aligned_cols=28 Identities=18% Similarity=-0.103 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhcCccccchhhHHH
Q 004424 670 SWAAVGIFFNYYVFRRYKGWWARHNYIL 697 (754)
Q Consensus 670 ~~~~vG~~~~~~~rr~~~~w~~kynyvl 697 (754)
..|..+.++-++.+|+.+.-++++.++.
T Consensus 13 ~~m~~~tv~F~~~~~~~~~~~r~~~~~~ 40 (225)
T d1h2sa_ 13 IGMLVGTLAFAWAGRDAGSGERRYYVTL 40 (225)
T ss_dssp HHHHHHHHHHHHHTTTCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccchhhHHH
Confidence 4456666666666666666666665543
No 9
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.17 E-value=2.5e+02 Score=19.14 Aligned_cols=9 Identities=33% Similarity=0.737 Sum_probs=4.6
Q ss_pred CCCCccchh
Q 004424 123 GPFNLKEHV 131 (754)
Q Consensus 123 gpf~~kE~~ 131 (754)
||||..|-.
T Consensus 4 g~WT~eED~ 12 (52)
T d1gvda_ 4 GPWTKEEDQ 12 (52)
T ss_dssp CSCCHHHHH
T ss_pred CCCCHHHHH
Confidence 455555544
No 10
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.17 E-value=5e+02 Score=17.40 Aligned_cols=13 Identities=38% Similarity=0.680 Sum_probs=8.7
Q ss_pred HHHHhhHHHHhhc
Q 004424 172 TTQLLGYGWAGIF 184 (754)
Q Consensus 172 s~q~lG~~~Ag~l 184 (754)
-+-++|.+||.|+
T Consensus 24 m~~~fGsgfa~PF 36 (46)
T d1v54l_ 24 MTLFFGSGFAAPF 36 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhccccchH
Confidence 3556788888663
Done!