Query 004425
Match_columns 754
No_of_seqs 756 out of 4793
Neff 11.0
Searched_HMMs 46136
Date Thu Mar 28 23:13:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 5E-115 1E-119 995.2 85.3 697 49-749 77-773 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.9E-86 4.2E-91 741.3 64.7 531 222-754 84-616 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.2E-81 2.6E-86 720.0 67.4 573 121-700 48-623 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.3E-70 2.9E-75 613.8 56.7 522 89-633 366-915 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.2E-69 2.7E-74 606.0 56.1 474 121-599 84-561 (697)
6 PLN03218 maturation of RBCL 1; 100.0 6.8E-68 1.5E-72 592.0 57.7 532 54-602 366-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 6.8E-35 1.5E-39 343.6 70.6 626 58-697 159-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.5E-35 1.4E-39 343.7 69.3 579 102-694 304-898 (899)
9 PRK11447 cellulose synthase su 100.0 3E-25 6.5E-30 260.9 67.5 615 61-695 31-739 (1157)
10 PRK11447 cellulose synthase su 100.0 1.1E-24 2.3E-29 256.3 58.5 586 98-698 33-702 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 2.5E-21 5.4E-26 216.9 58.0 380 301-695 319-739 (987)
12 PRK09782 bacteriophage N4 rece 99.9 2E-20 4.3E-25 209.7 62.2 559 107-696 58-706 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 4.5E-21 9.7E-26 189.6 36.5 448 230-692 53-515 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 3.3E-20 7.1E-25 183.6 29.1 417 264-695 52-484 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 9E-18 1.9E-22 185.8 43.5 421 227-696 129-571 (615)
16 KOG2002 TPR-containing nuclear 99.9 2E-16 4.3E-21 165.8 49.1 577 109-698 146-800 (1018)
17 PRK11788 tetratricopeptide rep 99.8 1.9E-18 4.2E-23 181.6 29.5 290 407-703 46-354 (389)
18 KOG2002 TPR-containing nuclear 99.8 1.3E-15 2.9E-20 159.6 49.4 639 35-696 26-745 (1018)
19 KOG4422 Uncharacterized conser 99.8 4.8E-16 1E-20 147.9 38.8 304 60-395 118-467 (625)
20 PRK10049 pgaA outer membrane p 99.8 2.3E-16 5.1E-21 177.6 43.5 397 264-696 19-456 (765)
21 PRK15174 Vi polysaccharide exp 99.8 1.5E-16 3.3E-21 175.2 40.8 351 306-667 16-386 (656)
22 PRK11788 tetratricopeptide rep 99.8 1.6E-17 3.5E-22 174.6 31.6 297 234-602 44-354 (389)
23 PRK10049 pgaA outer membrane p 99.8 1.9E-15 4.2E-20 170.3 47.3 405 227-670 17-464 (765)
24 TIGR00990 3a0801s09 mitochondr 99.8 9.5E-16 2.1E-20 169.7 42.5 426 196-668 129-577 (615)
25 PRK15174 Vi polysaccharide exp 99.8 4.5E-16 9.7E-21 171.4 38.7 351 336-698 15-383 (656)
26 PRK14574 hmsH outer membrane p 99.8 1.6E-14 3.5E-19 159.2 46.8 432 204-667 44-518 (822)
27 KOG4422 Uncharacterized conser 99.8 1.9E-14 4.1E-19 137.1 39.6 329 123-497 115-466 (625)
28 KOG4318 Bicoid mRNA stability 99.8 1.3E-14 2.9E-19 150.3 37.2 547 45-624 12-619 (1088)
29 KOG0495 HAT repeat protein [RN 99.7 4.3E-11 9.2E-16 120.7 54.7 459 236-710 417-892 (913)
30 KOG2076 RNA polymerase III tra 99.7 1.5E-11 3.2E-16 129.0 52.8 613 68-692 150-891 (895)
31 PRK14574 hmsH outer membrane p 99.7 1E-12 2.2E-17 145.2 45.7 432 102-566 43-518 (822)
32 KOG4318 Bicoid mRNA stability 99.7 5.3E-13 1.2E-17 138.6 37.6 523 145-700 11-598 (1088)
33 KOG2076 RNA polymerase III tra 99.7 1.3E-11 2.9E-16 129.3 46.5 546 106-679 152-786 (895)
34 KOG2003 TPR repeat-containing 99.6 7.2E-12 1.6E-16 120.5 34.7 202 476-682 502-709 (840)
35 KOG0495 HAT repeat protein [RN 99.6 1.6E-09 3.4E-14 109.6 50.4 415 268-695 384-845 (913)
36 KOG0547 Translocase of outer m 99.6 1.1E-11 2.5E-16 120.6 33.0 213 476-694 338-564 (606)
37 PF13429 TPR_15: Tetratricopep 99.6 7.8E-15 1.7E-19 145.6 10.2 248 442-694 21-275 (280)
38 KOG1126 DNA-binding cell divis 99.6 9.5E-13 2.1E-17 133.6 24.2 244 444-695 334-585 (638)
39 KOG2003 TPR repeat-containing 99.5 1E-10 2.2E-15 112.7 33.6 466 129-616 206-709 (840)
40 KOG1155 Anaphase-promoting com 99.5 2.5E-10 5.4E-15 110.8 34.8 314 371-695 174-494 (559)
41 KOG2047 mRNA splicing factor [ 99.5 2.3E-08 4.9E-13 101.3 47.4 458 93-593 102-614 (835)
42 KOG1155 Anaphase-promoting com 99.5 2.4E-09 5.3E-14 104.1 38.6 192 468-664 334-538 (559)
43 KOG1126 DNA-binding cell divis 99.5 6.8E-12 1.5E-16 127.5 21.8 277 411-698 334-622 (638)
44 PRK10747 putative protoheme IX 99.5 4.9E-11 1.1E-15 124.0 29.0 274 409-694 97-388 (398)
45 PRK10747 putative protoheme IX 99.4 9.1E-11 2E-15 122.0 29.3 149 509-663 239-391 (398)
46 KOG1915 Cell cycle control pro 99.4 4E-08 8.8E-13 95.9 43.4 480 205-695 84-624 (677)
47 KOG1915 Cell cycle control pro 99.4 1.4E-08 3E-13 99.1 39.6 443 237-693 85-582 (677)
48 TIGR00540 hemY_coli hemY prote 99.4 5.7E-10 1.2E-14 116.7 32.9 213 442-693 166-396 (409)
49 TIGR00540 hemY_coli hemY prote 99.4 2E-10 4.3E-15 120.2 28.7 282 338-626 96-395 (409)
50 KOG1173 Anaphase-promoting com 99.4 1.3E-09 2.8E-14 108.9 32.2 245 442-693 257-515 (611)
51 PF13429 TPR_15: Tetratricopep 99.4 1.5E-12 3.3E-17 129.3 10.5 252 401-662 13-277 (280)
52 TIGR02521 type_IV_pilW type IV 99.4 1.1E-10 2.4E-15 113.1 22.4 198 497-695 29-231 (234)
53 COG3071 HemY Uncharacterized e 99.3 3.4E-09 7.5E-14 101.6 28.1 276 409-694 97-388 (400)
54 KOG0985 Vesicle coat protein c 99.3 6.9E-07 1.5E-11 95.2 46.1 595 64-695 474-1248(1666)
55 KOG0547 Translocase of outer m 99.3 1.9E-08 4.1E-13 98.7 32.0 216 442-665 339-569 (606)
56 KOG2047 mRNA splicing factor [ 99.3 5.2E-07 1.1E-11 91.8 42.7 438 64-526 108-613 (835)
57 KOG1840 Kinesin light chain [C 99.3 1.5E-09 3.3E-14 112.0 25.3 230 465-694 200-477 (508)
58 PF13041 PPR_2: PPR repeat fam 99.3 7E-12 1.5E-16 86.4 5.7 50 223-272 1-50 (50)
59 KOG2376 Signal recognition par 99.3 2.9E-07 6.4E-12 92.8 40.0 183 503-693 313-517 (652)
60 COG2956 Predicted N-acetylgluc 99.3 1E-08 2.2E-13 95.4 26.7 267 339-643 48-325 (389)
61 KOG1174 Anaphase-promoting com 99.3 7.1E-08 1.5E-12 92.7 33.2 308 358-671 191-509 (564)
62 COG3071 HemY Uncharacterized e 99.3 1.9E-08 4.1E-13 96.7 29.4 285 238-558 97-389 (400)
63 PRK12370 invasion protein regu 99.3 1.5E-09 3.3E-14 118.1 25.4 244 443-696 275-535 (553)
64 COG2956 Predicted N-acetylgluc 99.2 8.1E-09 1.8E-13 96.0 25.5 299 410-717 49-368 (389)
65 KOG1173 Anaphase-promoting com 99.2 3.2E-08 6.9E-13 99.1 31.3 472 60-591 18-515 (611)
66 PF13041 PPR_2: PPR repeat fam 99.2 2.2E-11 4.8E-16 83.9 6.7 50 528-577 1-50 (50)
67 KOG4162 Predicted calmodulin-b 99.2 2.7E-07 5.8E-12 96.1 38.6 445 187-696 316-783 (799)
68 KOG4162 Predicted calmodulin-b 99.2 1E-07 2.2E-12 99.2 35.1 384 287-698 315-751 (799)
69 PRK11189 lipoprotein NlpI; Pro 99.2 2E-09 4.3E-14 107.0 21.9 212 478-698 40-267 (296)
70 KOG1129 TPR repeat-containing 99.2 1.9E-09 4.1E-14 99.9 18.5 225 433-696 229-458 (478)
71 COG3063 PilF Tfp pilus assembl 99.2 2.4E-09 5.2E-14 95.0 18.3 161 533-698 38-204 (250)
72 PRK12370 invasion protein regu 99.2 5.3E-09 1.1E-13 113.9 23.9 210 478-695 275-501 (553)
73 KOG3785 Uncharacterized conser 99.2 3.8E-08 8.2E-13 92.5 25.4 364 201-588 64-451 (557)
74 TIGR02521 type_IV_pilW type IV 99.1 1.4E-08 3.1E-13 98.2 23.6 193 468-663 35-233 (234)
75 KOG1840 Kinesin light chain [C 99.1 5E-08 1.1E-12 100.9 27.6 129 533-661 328-478 (508)
76 KOG2376 Signal recognition par 99.1 2E-06 4.4E-11 87.0 37.2 369 202-589 85-515 (652)
77 KOG3616 Selective LIM binding 99.1 1.2E-06 2.5E-11 90.3 36.1 493 105-693 456-963 (1636)
78 KOG0985 Vesicle coat protein c 99.1 8.4E-06 1.8E-10 87.2 43.2 562 96-693 609-1367(1666)
79 KOG3616 Selective LIM binding 99.1 1E-05 2.2E-10 83.6 41.9 479 165-688 797-1383(1636)
80 PRK11189 lipoprotein NlpI; Pro 99.1 4.5E-08 9.7E-13 97.4 24.7 233 442-682 39-286 (296)
81 KOG1174 Anaphase-promoting com 99.1 2.1E-06 4.6E-11 82.8 33.1 403 297-741 99-519 (564)
82 KOG3785 Uncharacterized conser 99.0 8E-07 1.7E-11 83.8 28.8 179 65-254 29-214 (557)
83 KOG0624 dsRNA-activated protei 99.0 1.3E-06 2.7E-11 82.2 29.3 314 301-695 44-369 (504)
84 PF12569 NARP1: NMDA receptor- 99.0 6.5E-06 1.4E-10 86.7 37.3 428 233-692 12-516 (517)
85 KOG1156 N-terminal acetyltrans 99.0 2E-05 4.4E-10 80.9 39.0 440 172-660 20-509 (700)
86 KOG1129 TPR repeat-containing 98.9 7.4E-08 1.6E-12 89.6 17.3 224 397-627 224-455 (478)
87 KOG3617 WD40 and TPR repeat-co 98.9 4.7E-05 1E-09 80.1 39.1 149 91-251 724-884 (1416)
88 KOG1156 N-terminal acetyltrans 98.9 1.5E-05 3.3E-10 81.8 34.5 413 237-698 19-470 (700)
89 PF12569 NARP1: NMDA receptor- 98.9 1.3E-05 2.9E-10 84.3 35.1 121 332-457 200-333 (517)
90 COG3063 PilF Tfp pilus assembl 98.9 8.6E-07 1.9E-11 79.1 21.2 195 469-667 40-241 (250)
91 KOG0548 Molecular co-chaperone 98.8 1.9E-05 4.1E-10 79.4 31.8 408 268-695 10-454 (539)
92 KOG1125 TPR repeat-containing 98.8 7.3E-08 1.6E-12 97.1 14.7 217 476-695 297-526 (579)
93 KOG1127 TPR repeat-containing 98.8 0.0003 6.5E-09 76.1 41.8 157 95-253 494-658 (1238)
94 KOG1127 TPR repeat-containing 98.8 2.5E-05 5.4E-10 84.0 33.7 551 125-695 493-1103(1238)
95 KOG3617 WD40 and TPR repeat-co 98.8 6.9E-05 1.5E-09 78.9 36.1 222 68-322 738-994 (1416)
96 PRK04841 transcriptional regul 98.8 0.00047 1E-08 81.4 48.8 225 471-695 498-759 (903)
97 PF04733 Coatomer_E: Coatomer 98.8 4.7E-07 1E-11 88.6 19.3 156 505-667 108-270 (290)
98 KOG4340 Uncharacterized conser 98.8 1.5E-05 3.2E-10 73.7 26.3 385 261-695 11-442 (459)
99 TIGR03302 OM_YfiO outer membra 98.8 8E-07 1.7E-11 85.9 19.2 179 498-696 32-232 (235)
100 PF04733 Coatomer_E: Coatomer 98.7 3.9E-07 8.4E-12 89.1 16.6 237 442-695 14-264 (290)
101 cd05804 StaR_like StaR_like; a 98.7 2.3E-05 4.9E-10 81.3 30.6 253 442-697 56-337 (355)
102 KOG0548 Molecular co-chaperone 98.7 2.8E-05 6.1E-10 78.3 29.0 175 507-690 306-483 (539)
103 PRK15359 type III secretion sy 98.7 3.2E-07 7E-12 79.9 14.0 123 551-679 14-138 (144)
104 PRK10370 formate-dependent nit 98.7 1.1E-06 2.5E-11 81.0 17.6 119 578-698 52-175 (198)
105 PLN02789 farnesyltranstransfer 98.7 6.7E-06 1.5E-10 81.6 22.6 211 478-693 51-299 (320)
106 PRK15363 pathogenicity island 98.7 4.9E-07 1.1E-11 76.9 12.3 97 600-696 34-132 (157)
107 PF12854 PPR_1: PPR repeat 98.6 3.2E-08 7E-13 60.9 3.6 33 189-221 2-34 (34)
108 KOG1914 mRNA cleavage and poly 98.6 0.00097 2.1E-08 67.4 38.9 178 445-624 347-533 (656)
109 KOG4340 Uncharacterized conser 98.6 1.5E-05 3.2E-10 73.7 20.3 275 406-692 20-335 (459)
110 cd05804 StaR_like StaR_like; a 98.6 0.00024 5.1E-09 73.7 32.4 192 470-663 120-337 (355)
111 PRK15359 type III secretion sy 98.6 1.2E-06 2.7E-11 76.3 12.8 107 586-697 14-122 (144)
112 KOG1070 rRNA processing protei 98.6 7.3E-06 1.6E-10 90.9 21.2 197 498-698 1457-1665(1710)
113 PF12854 PPR_1: PPR repeat 98.6 9.7E-08 2.1E-12 58.7 4.1 33 290-322 2-34 (34)
114 PRK04841 transcriptional regul 98.5 0.00059 1.3E-08 80.6 38.0 257 335-593 461-759 (903)
115 COG5010 TadD Flp pilus assembl 98.5 6.1E-06 1.3E-10 75.5 16.0 122 572-695 73-196 (257)
116 KOG1128 Uncharacterized conser 98.5 4.9E-06 1.1E-10 86.5 17.1 184 494-692 393-578 (777)
117 KOG0624 dsRNA-activated protei 98.5 0.00052 1.1E-08 65.2 28.0 201 442-669 168-377 (504)
118 COG4783 Putative Zn-dependent 98.5 6.6E-05 1.4E-09 75.0 23.1 135 540-696 316-454 (484)
119 KOG1128 Uncharacterized conser 98.5 3.9E-05 8.4E-10 80.1 22.0 217 391-627 393-613 (777)
120 PRK10370 formate-dependent nit 98.4 1.9E-05 4.2E-10 72.9 18.1 154 506-672 23-183 (198)
121 PRK15179 Vi polysaccharide bio 98.4 2.7E-05 5.8E-10 85.4 21.8 137 529-670 85-225 (694)
122 KOG2053 Mitochondrial inherita 98.4 0.0057 1.2E-07 66.0 42.0 535 69-639 20-619 (932)
123 KOG1914 mRNA cleavage and poly 98.4 0.0037 8E-08 63.4 34.3 124 397-525 367-498 (656)
124 PRK15179 Vi polysaccharide bio 98.4 4E-05 8.7E-10 84.1 21.6 132 561-695 82-216 (694)
125 TIGR03302 OM_YfiO outer membra 98.4 2.1E-05 4.5E-10 76.0 17.6 182 462-665 31-235 (235)
126 COG4783 Putative Zn-dependent 98.4 9.2E-05 2E-09 74.0 21.7 121 573-695 314-436 (484)
127 KOG1070 rRNA processing protei 98.4 0.00013 2.7E-09 81.6 24.0 240 452-694 1447-1698(1710)
128 PLN02789 farnesyltranstransfer 98.4 5.2E-05 1.1E-09 75.4 19.7 187 505-695 43-249 (320)
129 KOG1125 TPR repeat-containing 98.3 7.5E-05 1.6E-09 76.0 20.2 213 372-591 296-524 (579)
130 COG5010 TadD Flp pilus assembl 98.3 7.2E-05 1.6E-09 68.7 18.0 119 571-691 106-226 (257)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.6E-05 3.4E-10 80.4 14.6 122 568-694 172-295 (395)
132 TIGR02552 LcrH_SycD type III s 98.3 9E-06 1.9E-10 70.6 11.4 94 602-695 18-113 (135)
133 KOG3060 Uncharacterized conser 98.2 7.8E-05 1.7E-09 67.8 16.1 183 512-698 25-222 (289)
134 TIGR02552 LcrH_SycD type III s 98.2 4.6E-05 9.9E-10 66.1 13.4 114 552-669 5-121 (135)
135 TIGR00756 PPR pentatricopeptid 98.2 3.8E-06 8.2E-11 52.8 4.5 35 226-260 1-35 (35)
136 KOG3081 Vesicle coat complex C 98.1 0.0012 2.5E-08 60.9 21.5 145 506-687 115-261 (299)
137 PRK14720 transcript cleavage f 98.1 0.00049 1.1E-08 76.5 22.9 46 633-678 223-268 (906)
138 TIGR00756 PPR pentatricopeptid 98.1 4.1E-06 9E-11 52.6 4.0 35 125-159 1-35 (35)
139 KOG0553 TPR repeat-containing 98.1 2.2E-05 4.9E-10 73.4 10.0 99 572-673 88-189 (304)
140 PF09976 TPR_21: Tetratricopep 98.0 0.00015 3.2E-09 63.5 13.6 85 607-692 54-143 (145)
141 PF13812 PPR_3: Pentatricopept 98.0 9.1E-06 2E-10 50.5 4.3 33 226-258 2-34 (34)
142 PF13812 PPR_3: Pentatricopept 98.0 8.3E-06 1.8E-10 50.7 4.0 33 125-157 2-34 (34)
143 PF12895 Apc3: Anaphase-promot 98.0 6.7E-06 1.4E-10 64.2 4.2 78 614-692 2-83 (84)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00022 4.9E-09 72.3 15.7 126 501-631 171-298 (395)
145 PF13414 TPR_11: TPR repeat; P 98.0 1.8E-05 3.9E-10 59.0 6.0 64 632-695 2-66 (69)
146 KOG3081 Vesicle coat complex C 98.0 0.0027 5.9E-08 58.6 20.4 137 450-593 94-235 (299)
147 cd00189 TPR Tetratricopeptide 98.0 7.3E-05 1.6E-09 60.0 10.0 92 604-695 3-96 (100)
148 PF09976 TPR_21: Tetratricopep 98.0 0.00044 9.5E-09 60.6 15.4 124 533-660 15-145 (145)
149 PLN03088 SGT1, suppressor of 98.0 0.00011 2.4E-09 74.9 13.2 85 611-695 12-98 (356)
150 COG3898 Uncharacterized membra 98.0 0.023 5E-07 55.5 28.7 271 409-693 97-389 (531)
151 PRK14720 transcript cleavage f 97.9 0.0072 1.6E-07 67.5 27.4 170 442-644 96-268 (906)
152 KOG0550 Molecular chaperone (D 97.9 0.00077 1.7E-08 65.9 16.9 152 538-695 177-349 (486)
153 PF13432 TPR_16: Tetratricopep 97.9 3.2E-05 7E-10 56.8 5.8 58 639-696 3-60 (65)
154 KOG3060 Uncharacterized conser 97.9 0.0014 3.1E-08 59.9 16.9 176 495-673 47-231 (289)
155 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00016 3.5E-09 61.0 10.7 93 604-696 5-105 (119)
156 KOG2053 Mitochondrial inherita 97.9 0.069 1.5E-06 58.1 42.0 180 532-720 438-632 (932)
157 KOG0553 TPR repeat-containing 97.9 0.00016 3.4E-09 67.9 11.1 106 537-647 88-197 (304)
158 PRK15331 chaperone protein Sic 97.8 0.0012 2.7E-08 56.7 14.7 90 606-695 42-133 (165)
159 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00045 9.8E-09 58.2 11.4 103 569-671 6-114 (119)
160 PF14559 TPR_19: Tetratricopep 97.7 8.1E-05 1.8E-09 55.3 5.9 52 644-695 2-53 (68)
161 COG4235 Cytochrome c biogenesi 97.7 0.00043 9.2E-09 65.5 11.8 107 597-703 152-263 (287)
162 PF01535 PPR: PPR repeat; Int 97.7 4.2E-05 9.1E-10 46.3 3.4 31 226-256 1-31 (31)
163 PF13431 TPR_17: Tetratricopep 97.7 2.1E-05 4.6E-10 48.3 2.0 32 656-687 2-33 (34)
164 PF01535 PPR: PPR repeat; Int 97.7 4.1E-05 8.9E-10 46.3 3.3 31 125-155 1-31 (31)
165 COG4700 Uncharacterized protei 97.7 0.00094 2E-08 57.7 12.3 153 539-695 65-221 (251)
166 PRK10153 DNA-binding transcrip 97.7 0.0018 4E-08 69.1 17.2 139 528-697 335-483 (517)
167 PLN03088 SGT1, suppressor of 97.7 0.00067 1.5E-08 69.3 13.4 104 575-680 12-117 (356)
168 PRK02603 photosystem I assembl 97.7 0.0013 2.8E-08 59.6 13.8 129 530-682 35-166 (172)
169 COG3898 Uncharacterized membra 97.6 0.04 8.7E-07 53.9 23.4 251 429-688 84-350 (531)
170 PRK02603 photosystem I assembl 97.6 0.00046 1E-08 62.6 10.5 80 603-682 37-121 (172)
171 PF13432 TPR_16: Tetratricopep 97.6 0.00014 3E-09 53.4 5.7 61 607-667 3-65 (65)
172 COG4700 Uncharacterized protei 97.6 0.0046 9.9E-08 53.7 15.2 98 596-693 84-186 (251)
173 KOG1538 Uncharacterized conser 97.6 0.012 2.6E-07 60.9 20.6 160 405-628 641-800 (1081)
174 CHL00033 ycf3 photosystem I as 97.6 0.0033 7.1E-08 56.8 15.4 122 531-683 36-167 (168)
175 CHL00033 ycf3 photosystem I as 97.6 0.00046 9.9E-09 62.4 9.7 92 602-693 36-139 (168)
176 cd00189 TPR Tetratricopeptide 97.5 0.001 2.2E-08 53.2 10.3 59 533-593 3-62 (100)
177 PF07079 DUF1347: Protein of u 97.5 0.13 2.8E-06 51.6 35.2 73 621-694 444-522 (549)
178 PF13371 TPR_9: Tetratricopept 97.5 0.00029 6.2E-09 53.2 6.2 58 640-697 2-59 (73)
179 PF05843 Suf: Suppressor of fo 97.5 0.0025 5.3E-08 62.7 14.4 134 531-667 2-141 (280)
180 PF13281 DUF4071: Domain of un 97.5 0.018 3.8E-07 57.7 19.9 161 504-667 146-339 (374)
181 PF08579 RPM2: Mitochondrial r 97.5 0.0011 2.4E-08 52.5 8.8 81 126-206 27-116 (120)
182 PF04840 Vps16_C: Vps16, C-ter 97.4 0.16 3.4E-06 50.7 30.6 121 501-641 179-299 (319)
183 PF12895 Apc3: Anaphase-promot 97.4 0.00047 1E-08 53.7 6.2 79 543-625 2-82 (84)
184 PF08579 RPM2: Mitochondrial r 97.4 0.0015 3.2E-08 51.8 8.5 79 229-307 29-116 (120)
185 PF14559 TPR_19: Tetratricopep 97.4 0.00027 5.9E-09 52.4 4.5 63 613-675 3-67 (68)
186 PRK10153 DNA-binding transcrip 97.3 0.0069 1.5E-07 64.7 16.3 50 649-698 400-451 (517)
187 PF13428 TPR_14: Tetratricopep 97.3 0.0004 8.7E-09 45.9 3.9 42 634-675 2-43 (44)
188 PF10037 MRP-S27: Mitochondria 97.3 0.0029 6.3E-08 64.6 11.7 118 191-308 63-186 (429)
189 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0011 2.4E-08 66.8 8.5 65 632-696 74-141 (453)
190 PF12688 TPR_5: Tetratrico pep 97.3 0.0043 9.3E-08 51.3 10.6 86 607-692 7-100 (120)
191 KOG0543 FKBP-type peptidyl-pro 97.2 0.0025 5.5E-08 62.7 10.2 127 571-742 214-340 (397)
192 PRK15363 pathogenicity island 97.2 0.0099 2.1E-07 51.1 12.4 89 533-625 38-127 (157)
193 PRK10866 outer membrane biogen 97.2 0.039 8.5E-07 52.8 17.9 171 505-694 38-239 (243)
194 PF10037 MRP-S27: Mitochondria 97.2 0.0097 2.1E-07 60.9 14.4 119 460-578 62-186 (429)
195 KOG0550 Molecular chaperone (D 97.2 0.15 3.2E-06 50.6 21.4 162 406-593 179-349 (486)
196 PF14938 SNAP: Soluble NSF att 97.1 0.016 3.4E-07 57.4 15.4 25 569-593 159-183 (282)
197 PF13414 TPR_11: TPR repeat; P 97.1 0.00086 1.9E-08 49.9 4.8 64 601-664 3-69 (69)
198 PRK10803 tol-pal system protei 97.1 0.0032 7E-08 60.6 9.8 62 634-695 181-245 (263)
199 PF04840 Vps16_C: Vps16, C-ter 97.1 0.36 7.9E-06 48.1 28.7 104 400-521 181-284 (319)
200 KOG2280 Vacuolar assembly/sort 97.1 0.59 1.3E-05 50.2 30.7 110 500-625 685-794 (829)
201 KOG1130 Predicted G-alpha GTPa 97.1 0.0022 4.8E-08 62.5 8.1 128 567-694 197-342 (639)
202 PF06239 ECSIT: Evolutionarily 97.0 0.0051 1.1E-07 55.4 9.6 72 138-209 66-153 (228)
203 PF06239 ECSIT: Evolutionarily 97.0 0.006 1.3E-07 54.9 9.9 89 323-411 44-153 (228)
204 PF05843 Suf: Suppressor of fo 97.0 0.0068 1.5E-07 59.6 11.3 129 566-696 2-136 (280)
205 PF12688 TPR_5: Tetratrico pep 97.0 0.018 3.9E-07 47.7 12.0 91 536-626 7-100 (120)
206 PF13371 TPR_9: Tetratricopept 97.0 0.0021 4.5E-08 48.4 6.1 65 609-673 3-69 (73)
207 KOG1538 Uncharacterized conser 97.0 0.11 2.4E-06 54.3 19.2 234 262-561 600-848 (1081)
208 KOG4555 TPR repeat-containing 96.9 0.0072 1.6E-07 49.0 8.7 91 609-699 51-147 (175)
209 PF14938 SNAP: Soluble NSF att 96.9 0.5 1.1E-05 46.7 24.6 95 533-627 158-263 (282)
210 PF07079 DUF1347: Protein of u 96.9 0.63 1.4E-05 47.0 36.8 352 265-638 133-530 (549)
211 KOG2041 WD40 repeat protein [G 96.8 0.93 2E-05 48.2 27.2 126 207-350 747-876 (1189)
212 KOG1130 Predicted G-alpha GTPa 96.8 0.01 2.3E-07 58.1 10.3 50 336-385 27-79 (639)
213 KOG2796 Uncharacterized conser 96.8 0.11 2.4E-06 48.1 16.0 168 502-669 139-322 (366)
214 PRK10803 tol-pal system protei 96.8 0.027 5.8E-07 54.4 13.2 65 604-668 183-252 (263)
215 KOG0543 FKBP-type peptidyl-pro 96.7 0.023 5E-07 56.3 11.9 138 536-695 214-354 (397)
216 KOG1258 mRNA processing protei 96.7 1.1 2.3E-05 47.3 32.8 181 498-681 296-489 (577)
217 PF03704 BTAD: Bacterial trans 96.6 0.034 7.4E-07 48.7 11.6 107 575-695 16-124 (146)
218 PRK10866 outer membrane biogen 96.5 0.56 1.2E-05 45.0 20.2 51 406-458 42-98 (243)
219 PF13424 TPR_12: Tetratricopep 96.5 0.0043 9.4E-08 47.4 4.3 61 634-694 6-73 (78)
220 PF13525 YfiO: Outer membrane 96.4 0.3 6.5E-06 45.5 17.1 164 506-688 12-199 (203)
221 KOG2796 Uncharacterized conser 96.4 0.19 4.2E-06 46.6 14.8 141 327-471 178-326 (366)
222 PF13512 TPR_18: Tetratricopep 96.4 0.062 1.3E-06 45.4 10.9 87 609-695 18-127 (142)
223 KOG2280 Vacuolar assembly/sort 96.3 2 4.4E-05 46.3 27.6 136 152-288 425-574 (829)
224 PRK11906 transcriptional regul 96.3 0.057 1.2E-06 55.0 12.1 117 546-665 274-404 (458)
225 KOG2114 Vacuolar assembly/sort 96.2 2.6 5.5E-05 46.3 30.3 118 198-322 338-458 (933)
226 COG0457 NrfG FOG: TPR repeat [ 96.2 1.2 2.6E-05 42.4 27.1 193 499-695 59-264 (291)
227 PF13424 TPR_12: Tetratricopep 96.1 0.0072 1.6E-07 46.1 3.9 30 633-662 46-75 (78)
228 COG5107 RNA14 Pre-mRNA 3'-end 96.1 1.9 4.2E-05 43.5 28.5 133 530-666 397-535 (660)
229 KOG1941 Acetylcholine receptor 96.0 0.71 1.5E-05 45.1 17.3 122 470-591 128-272 (518)
230 PF12921 ATP13: Mitochondrial 96.0 0.072 1.6E-06 44.6 9.5 81 565-645 2-100 (126)
231 KOG1920 IkappaB kinase complex 96.0 4.2 9.1E-05 46.6 25.2 56 571-628 971-1026(1265)
232 COG1729 Uncharacterized protei 95.9 0.049 1.1E-06 51.3 9.0 64 631-696 178-244 (262)
233 PF13525 YfiO: Outer membrane 95.9 0.78 1.7E-05 42.7 17.1 142 533-695 8-169 (203)
234 COG3118 Thioredoxin domain-con 95.8 0.27 5.9E-06 46.8 13.5 119 573-694 142-263 (304)
235 COG0457 NrfG FOG: TPR repeat [ 95.8 1.8 3.9E-05 41.1 25.6 217 445-665 39-268 (291)
236 PRK11906 transcriptional regul 95.8 0.43 9.3E-06 48.9 15.5 61 632-692 337-397 (458)
237 COG4235 Cytochrome c biogenesi 95.7 0.36 7.7E-06 46.3 14.1 103 564-668 155-262 (287)
238 PF14432 DYW_deaminase: DYW fa 95.7 0.011 2.4E-07 48.7 3.4 41 703-747 2-43 (116)
239 PF03704 BTAD: Bacterial trans 95.7 0.11 2.3E-06 45.5 10.0 70 533-604 65-139 (146)
240 PF09205 DUF1955: Domain of un 95.6 1 2.3E-05 37.1 13.9 140 541-699 13-152 (161)
241 KOG4234 TPR repeat-containing 95.6 0.073 1.6E-06 47.1 8.1 87 611-697 105-198 (271)
242 PF07719 TPR_2: Tetratricopept 95.6 0.03 6.5E-07 34.3 4.4 33 634-666 2-34 (34)
243 PF12921 ATP13: Mitochondrial 95.5 0.039 8.5E-07 46.2 6.2 53 560-612 47-99 (126)
244 KOG1941 Acetylcholine receptor 95.5 0.17 3.7E-06 49.2 10.9 43 442-484 19-63 (518)
245 PF00515 TPR_1: Tetratricopept 95.4 0.027 5.8E-07 34.6 3.7 32 634-665 2-33 (34)
246 COG4105 ComL DNA uptake lipopr 95.3 2.4 5.2E-05 39.9 17.5 173 510-696 45-233 (254)
247 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.66 1.4E-05 47.5 15.0 61 498-558 74-140 (453)
248 PF04184 ST7: ST7 protein; In 95.3 0.24 5.1E-06 50.7 11.6 195 540-748 178-381 (539)
249 PF04053 Coatomer_WDAD: Coatom 95.1 0.3 6.4E-06 51.2 12.6 133 539-697 270-403 (443)
250 smart00299 CLH Clathrin heavy 95.1 0.89 1.9E-05 39.3 13.9 67 565-644 69-136 (140)
251 KOG2610 Uncharacterized conser 95.1 0.65 1.4E-05 44.8 13.2 112 512-627 116-235 (491)
252 KOG1920 IkappaB kinase complex 95.0 2.9 6.4E-05 47.7 20.0 166 442-627 864-1052(1265)
253 KOG3941 Intermediate in Toll s 94.7 0.26 5.7E-06 46.2 9.4 98 314-411 53-173 (406)
254 COG3118 Thioredoxin domain-con 94.6 2.6 5.6E-05 40.5 15.8 152 538-693 142-299 (304)
255 KOG3941 Intermediate in Toll s 94.5 0.31 6.8E-06 45.7 9.4 111 111-221 52-186 (406)
256 PRK15331 chaperone protein Sic 94.3 1.3 2.9E-05 38.5 12.3 84 540-627 47-131 (165)
257 PF04184 ST7: ST7 protein; In 94.3 4.9 0.00011 41.7 17.9 58 534-591 263-321 (539)
258 PF02259 FAT: FAT domain; Int 94.2 7.8 0.00017 39.8 20.8 150 528-680 144-305 (352)
259 PF08631 SPO22: Meiosis protei 94.1 6.5 0.00014 38.7 23.9 97 466-564 86-191 (278)
260 PF10300 DUF3808: Protein of u 94.1 2.1 4.5E-05 45.8 16.1 116 578-696 246-376 (468)
261 KOG2041 WD40 repeat protein [G 94.0 11 0.00023 40.7 32.7 57 392-455 848-904 (1189)
262 KOG4555 TPR repeat-containing 94.0 0.44 9.5E-06 39.1 8.1 54 538-593 51-105 (175)
263 PF13512 TPR_18: Tetratricopep 93.9 1.8 3.8E-05 36.9 12.0 114 537-667 17-133 (142)
264 KOG2610 Uncharacterized conser 93.9 0.59 1.3E-05 45.1 10.1 159 542-703 115-283 (491)
265 COG1729 Uncharacterized protei 93.8 0.6 1.3E-05 44.2 9.9 91 533-626 145-240 (262)
266 KOG2066 Vacuolar assembly/sort 93.7 13 0.00029 40.7 24.8 76 295-373 392-467 (846)
267 PF04053 Coatomer_WDAD: Coatom 93.6 2.1 4.5E-05 45.0 14.8 157 233-421 269-427 (443)
268 PF13176 TPR_7: Tetratricopept 93.5 0.11 2.4E-06 32.3 3.4 25 669-693 1-25 (36)
269 COG4105 ComL DNA uptake lipopr 93.5 6.9 0.00015 36.9 16.9 137 536-696 40-196 (254)
270 PF13170 DUF4003: Protein of u 93.5 7.5 0.00016 38.4 17.5 129 480-611 78-227 (297)
271 smart00299 CLH Clathrin heavy 93.4 4.7 0.0001 34.8 16.0 128 532-679 9-137 (140)
272 COG4785 NlpI Lipoprotein NlpI, 93.4 3.6 7.9E-05 37.4 13.4 158 531-695 100-265 (297)
273 PRK11619 lytic murein transgly 93.3 16 0.00035 40.7 31.8 55 605-659 316-372 (644)
274 KOG4648 Uncharacterized conser 93.2 0.16 3.5E-06 48.8 5.3 113 570-689 102-217 (536)
275 KOG4648 Uncharacterized conser 93.1 0.3 6.4E-06 47.1 6.8 87 537-634 104-199 (536)
276 KOG1585 Protein required for f 93.0 7.8 0.00017 36.1 18.9 205 460-691 23-251 (308)
277 PF10300 DUF3808: Protein of u 92.9 3 6.4E-05 44.6 14.9 114 512-627 246-373 (468)
278 PRK10941 hypothetical protein; 92.8 0.68 1.5E-05 44.7 9.1 82 636-740 184-265 (269)
279 COG2976 Uncharacterized protei 92.6 5.5 0.00012 35.7 13.3 115 548-666 70-192 (207)
280 PF04097 Nic96: Nup93/Nic96; 92.5 21 0.00045 39.8 23.5 81 442-527 271-355 (613)
281 KOG2114 Vacuolar assembly/sort 92.2 22 0.00048 39.5 29.9 157 57-221 282-458 (933)
282 PF13181 TPR_8: Tetratricopept 92.2 0.22 4.8E-06 30.3 3.3 31 635-665 3-33 (34)
283 PF08631 SPO22: Meiosis protei 92.1 13 0.00028 36.6 24.4 64 401-464 126-192 (278)
284 PF09613 HrpB1_HrpK: Bacterial 92.0 0.98 2.1E-05 39.2 8.0 53 645-697 22-74 (160)
285 PF07035 Mic1: Colon cancer-as 91.8 4.1 8.9E-05 36.0 11.8 134 144-289 14-149 (167)
286 PF09613 HrpB1_HrpK: Bacterial 91.8 5.9 0.00013 34.5 12.5 88 575-665 20-109 (160)
287 PF13281 DUF4071: Domain of un 91.4 18 0.00039 36.8 19.9 30 564-593 304-333 (374)
288 TIGR02561 HrpB1_HrpK type III 91.4 1.1 2.4E-05 38.1 7.5 54 645-698 22-75 (153)
289 KOG1586 Protein required for f 91.4 12 0.00026 34.7 17.2 70 610-679 163-243 (288)
290 PF13176 TPR_7: Tetratricopept 91.1 0.33 7.2E-06 30.1 3.3 28 635-662 1-28 (36)
291 PF00637 Clathrin: Region in C 90.9 0.075 1.6E-06 46.3 0.3 87 62-151 11-97 (143)
292 KOG1258 mRNA processing protei 90.8 25 0.00055 37.5 25.7 144 295-439 45-194 (577)
293 PF13428 TPR_14: Tetratricopep 90.5 0.93 2E-05 29.7 5.2 33 532-566 3-35 (44)
294 PF13170 DUF4003: Protein of u 90.4 3.6 7.9E-05 40.6 11.5 134 342-506 78-224 (297)
295 PF00515 TPR_1: Tetratricopept 90.3 0.7 1.5E-05 28.1 4.2 32 531-564 2-33 (34)
296 KOG1550 Extracellular protein 89.5 37 0.00081 37.3 23.4 208 479-695 308-537 (552)
297 PF04097 Nic96: Nup93/Nic96; 89.5 40 0.00086 37.6 22.2 46 226-273 113-158 (613)
298 KOG1586 Protein required for f 89.4 14 0.0003 34.3 13.0 94 603-696 115-224 (288)
299 COG3629 DnrI DNA-binding trans 89.4 3.6 7.8E-05 39.7 10.1 58 500-557 154-214 (280)
300 PF07721 TPR_4: Tetratricopept 89.3 0.48 1E-05 26.8 2.7 24 668-691 2-25 (26)
301 COG3629 DnrI DNA-binding trans 89.1 1.8 3.9E-05 41.8 7.9 55 639-693 159-213 (280)
302 PF09205 DUF1955: Domain of un 89.0 12 0.00027 31.2 12.7 134 442-597 15-151 (161)
303 KOG0890 Protein kinase of the 88.9 76 0.0017 40.2 29.5 308 369-697 1391-1732(2382)
304 KOG1585 Protein required for f 88.9 11 0.00025 35.1 12.2 45 648-692 125-175 (308)
305 PF07719 TPR_2: Tetratricopept 88.9 0.65 1.4E-05 28.1 3.3 28 668-695 2-29 (34)
306 COG4649 Uncharacterized protei 88.5 17 0.00036 32.0 15.6 122 540-661 68-195 (221)
307 COG5107 RNA14 Pre-mRNA 3'-end 88.3 33 0.00071 35.2 34.7 80 90-171 39-121 (660)
308 PF10602 RPN7: 26S proteasome 88.2 6.7 0.00015 35.4 10.7 61 533-593 39-101 (177)
309 KOG0890 Protein kinase of the 87.5 93 0.002 39.5 35.3 338 297-674 1422-1796(2382)
310 KOG0545 Aryl-hydrocarbon recep 87.2 21 0.00045 33.4 12.8 59 637-695 234-292 (329)
311 PRK09687 putative lyase; Provi 86.8 34 0.00073 33.7 25.2 73 395-474 205-277 (280)
312 PF02259 FAT: FAT domain; Int 86.5 30 0.00065 35.4 16.1 64 632-695 145-212 (352)
313 COG4649 Uncharacterized protei 86.0 14 0.00029 32.6 10.4 48 308-355 71-123 (221)
314 PF06552 TOM20_plant: Plant sp 85.9 1.5 3.3E-05 38.6 4.9 45 649-693 51-99 (186)
315 PF07035 Mic1: Colon cancer-as 85.9 24 0.00053 31.2 15.9 131 180-352 15-146 (167)
316 PF11207 DUF2989: Protein of u 85.9 4 8.7E-05 37.0 7.6 73 613-687 119-198 (203)
317 PF13374 TPR_10: Tetratricopep 85.8 1.2 2.5E-05 28.6 3.3 28 668-695 3-30 (42)
318 KOG4234 TPR repeat-containing 85.7 12 0.00026 33.7 10.2 35 642-676 177-211 (271)
319 PRK15180 Vi polysaccharide bio 85.6 9.8 0.00021 39.0 10.9 125 537-665 296-423 (831)
320 KOG0376 Serine-threonine phosp 85.6 1.4 3.1E-05 45.1 5.3 87 609-695 12-100 (476)
321 PF13174 TPR_6: Tetratricopept 85.4 0.88 1.9E-05 27.2 2.5 27 669-695 2-28 (33)
322 PF13181 TPR_8: Tetratricopept 85.4 1.6 3.4E-05 26.4 3.6 28 668-695 2-29 (34)
323 KOG1308 Hsp70-interacting prot 85.2 0.53 1.2E-05 45.7 2.0 88 614-701 127-216 (377)
324 KOG4570 Uncharacterized conser 84.8 4.6 0.0001 38.9 7.8 100 86-189 57-165 (418)
325 PF14853 Fis1_TPR_C: Fis1 C-te 84.8 2.1 4.5E-05 29.3 4.2 35 638-672 6-40 (53)
326 smart00028 TPR Tetratricopepti 84.8 1.6 3.5E-05 25.4 3.6 30 636-665 4-33 (34)
327 PF10602 RPN7: 26S proteasome 84.4 11 0.00024 34.0 10.0 59 500-558 37-101 (177)
328 KOG3364 Membrane protein invol 84.4 12 0.00026 31.4 8.9 45 649-693 51-97 (149)
329 PF14853 Fis1_TPR_C: Fis1 C-te 84.1 6.6 0.00014 26.9 6.4 51 669-745 3-53 (53)
330 KOG1550 Extracellular protein 83.9 53 0.0012 36.1 16.9 149 542-699 261-429 (552)
331 PF13174 TPR_6: Tetratricopept 83.7 1.9 4.1E-05 25.7 3.4 30 637-666 4-33 (33)
332 PF00637 Clathrin: Region in C 83.5 1.3 2.9E-05 38.4 3.7 85 165-252 13-97 (143)
333 cd00923 Cyt_c_Oxidase_Va Cytoc 83.3 7.6 0.00017 30.3 7.0 63 139-202 22-84 (103)
334 PHA02875 ankyrin repeat protei 83.2 66 0.0014 33.9 17.6 148 201-361 72-230 (413)
335 PF10345 Cohesin_load: Cohesin 82.5 89 0.0019 35.0 34.5 51 237-287 191-252 (608)
336 PF10345 Cohesin_load: Cohesin 82.0 93 0.002 34.8 36.7 57 638-694 539-604 (608)
337 COG2976 Uncharacterized protei 81.8 33 0.00072 31.0 11.4 91 606-697 94-189 (207)
338 KOG2066 Vacuolar assembly/sort 81.7 92 0.002 34.7 24.5 47 196-242 394-440 (846)
339 KOG4570 Uncharacterized conser 81.1 14 0.00031 35.8 9.4 101 289-391 58-165 (418)
340 KOG4642 Chaperone-dependent E3 81.0 4.2 9.1E-05 37.6 5.8 84 575-661 20-106 (284)
341 PRK09687 putative lyase; Provi 80.4 62 0.0013 31.8 26.5 75 497-576 204-278 (280)
342 PF13374 TPR_10: Tetratricopep 80.0 4.5 9.8E-05 25.7 4.4 27 532-558 4-30 (42)
343 PF02284 COX5A: Cytochrome c o 79.9 16 0.00035 28.9 7.7 60 548-609 28-87 (108)
344 PF02284 COX5A: Cytochrome c o 79.9 11 0.00023 29.8 6.8 62 140-202 26-87 (108)
345 COG1747 Uncharacterized N-term 79.8 85 0.0018 33.0 23.0 171 497-674 64-246 (711)
346 PF13431 TPR_17: Tetratricopep 79.4 2.1 4.5E-05 26.1 2.4 19 602-620 14-32 (34)
347 PF14561 TPR_20: Tetratricopep 79.4 4 8.8E-05 31.8 4.6 39 655-693 10-48 (90)
348 KOG4279 Serine/threonine prote 79.1 27 0.00057 38.3 11.6 111 539-676 296-409 (1226)
349 KOG0551 Hsp90 co-chaperone CNS 79.1 10 0.00022 37.2 7.9 88 606-693 86-179 (390)
350 PF06552 TOM20_plant: Plant sp 78.6 24 0.00053 31.4 9.5 103 568-698 31-138 (186)
351 COG3947 Response regulator con 78.3 7.6 0.00016 37.2 6.7 59 636-694 282-340 (361)
352 TIGR02561 HrpB1_HrpK type III 78.3 44 0.00094 28.8 10.7 48 578-628 23-71 (153)
353 cd00923 Cyt_c_Oxidase_Va Cytoc 78.1 21 0.00044 28.0 7.7 61 546-608 23-83 (103)
354 COG4455 ImpE Protein of avirul 77.9 7.9 0.00017 35.4 6.4 64 604-667 4-69 (273)
355 KOG1464 COP9 signalosome, subu 77.3 58 0.0013 31.0 11.9 195 494-688 21-252 (440)
356 PRK15180 Vi polysaccharide bio 77.0 19 0.0004 37.1 9.4 128 510-642 300-434 (831)
357 PF09670 Cas_Cas02710: CRISPR- 75.4 44 0.00096 34.6 12.2 120 540-661 141-269 (379)
358 KOG4507 Uncharacterized conser 75.2 8.1 0.00018 40.7 6.5 100 576-678 618-721 (886)
359 PF04910 Tcf25: Transcriptiona 75.0 94 0.002 31.9 14.3 64 632-695 99-167 (360)
360 COG2912 Uncharacterized conser 74.1 18 0.0004 34.6 8.2 80 637-739 185-264 (269)
361 TIGR02508 type_III_yscG type I 73.2 39 0.00084 26.7 8.1 78 175-255 21-98 (115)
362 PF14561 TPR_20: Tetratricopep 73.2 32 0.0007 26.8 8.1 64 631-694 20-86 (90)
363 PRK10941 hypothetical protein; 72.0 23 0.0005 34.4 8.6 68 606-673 186-255 (269)
364 PF09986 DUF2225: Uncharacteri 71.9 20 0.00044 33.5 8.0 64 633-696 118-194 (214)
365 TIGR02508 type_III_yscG type I 71.6 38 0.00082 26.8 7.7 53 302-356 46-98 (115)
366 COG2909 MalT ATP-dependent tra 71.5 1.9E+02 0.0041 33.0 29.5 184 442-626 471-684 (894)
367 PF13762 MNE1: Mitochondrial s 71.5 33 0.00071 29.5 8.3 77 96-172 42-128 (145)
368 smart00028 TPR Tetratricopepti 71.4 6.7 0.00015 22.4 3.4 28 668-695 2-29 (34)
369 KOG3824 Huntingtin interacting 71.3 15 0.00033 35.4 6.8 63 612-674 127-191 (472)
370 PF07720 TPR_3: Tetratricopept 71.3 12 0.00027 23.1 4.3 31 635-665 3-35 (36)
371 KOG2062 26S proteasome regulat 70.8 1.8E+02 0.0039 32.4 27.4 38 132-169 67-105 (929)
372 KOG0276 Vesicle coat complex C 70.5 91 0.002 33.6 12.6 46 510-557 648-693 (794)
373 KOG1464 COP9 signalosome, subu 70.4 1E+02 0.0022 29.4 17.2 208 432-646 70-317 (440)
374 PF11207 DUF2989: Protein of u 69.9 31 0.00067 31.5 8.2 73 343-416 123-198 (203)
375 KOG3807 Predicted membrane pro 69.1 35 0.00075 33.4 8.7 164 475-668 227-397 (556)
376 PHA02875 ankyrin repeat protei 68.6 97 0.0021 32.6 13.5 118 231-361 71-196 (413)
377 PRK12798 chemotaxis protein; R 68.4 1.5E+02 0.0033 30.6 22.9 179 512-693 125-321 (421)
378 KOG4642 Chaperone-dependent E3 68.0 55 0.0012 30.7 9.4 117 509-627 20-143 (284)
379 KOG2063 Vacuolar assembly/sort 67.9 1.1E+02 0.0023 35.4 13.5 130 126-272 506-638 (877)
380 TIGR03504 FimV_Cterm FimV C-te 67.4 11 0.00023 24.7 3.6 25 671-695 3-27 (44)
381 PF10579 Rapsyn_N: Rapsyn N-te 67.3 11 0.00023 28.3 3.9 45 645-689 18-65 (80)
382 COG0790 FOG: TPR repeat, SEL1 66.7 1.4E+02 0.003 29.6 18.8 77 619-698 173-268 (292)
383 KOG0276 Vesicle coat complex C 66.2 67 0.0015 34.5 10.7 99 307-422 649-747 (794)
384 PF13762 MNE1: Mitochondrial s 65.7 50 0.0011 28.5 8.2 82 126-207 41-128 (145)
385 smart00386 HAT HAT (Half-A-TPR 65.5 10 0.00023 22.1 3.3 30 647-676 1-30 (33)
386 KOG3824 Huntingtin interacting 64.7 19 0.0004 34.8 6.0 88 643-742 126-214 (472)
387 PF10579 Rapsyn_N: Rapsyn N-te 64.5 20 0.00044 26.8 4.9 21 603-623 45-65 (80)
388 PF12862 Apc5: Anaphase-promot 62.0 22 0.00048 28.0 5.4 52 644-695 9-69 (94)
389 PF14863 Alkyl_sulf_dimr: Alky 61.9 31 0.00068 29.6 6.5 66 617-685 57-122 (141)
390 PF13929 mRNA_stabil: mRNA sta 61.8 1.6E+02 0.0036 28.7 14.5 60 392-453 198-262 (292)
391 KOG2422 Uncharacterized conser 61.3 94 0.002 33.3 10.7 130 575-706 248-418 (665)
392 PF11768 DUF3312: Protein of u 61.0 1.4E+02 0.0031 31.9 12.2 127 503-653 412-543 (545)
393 COG4976 Predicted methyltransf 60.5 13 0.00028 34.3 4.1 58 610-667 4-63 (287)
394 PF00244 14-3-3: 14-3-3 protei 60.3 80 0.0017 30.1 9.7 50 649-698 142-200 (236)
395 PRK13342 recombination factor 60.0 2.3E+02 0.005 29.8 15.5 102 461-580 173-280 (413)
396 PF09477 Type_III_YscG: Bacter 59.7 91 0.002 25.1 8.3 79 174-255 21-99 (116)
397 COG4976 Predicted methyltransf 59.0 16 0.00035 33.7 4.4 55 644-698 6-60 (287)
398 COG5159 RPN6 26S proteasome re 58.7 1.8E+02 0.0039 28.2 13.4 52 537-588 10-68 (421)
399 TIGR03504 FimV_Cterm FimV C-te 58.4 24 0.00052 23.1 4.0 24 536-559 5-28 (44)
400 TIGR02710 CRISPR-associated pr 58.1 2.3E+02 0.005 29.2 12.8 54 537-590 137-196 (380)
401 KOG3364 Membrane protein invol 57.4 1.2E+02 0.0026 25.7 9.5 72 598-669 29-107 (149)
402 COG4941 Predicted RNA polymera 56.5 2.2E+02 0.0047 28.4 12.1 129 528-669 262-401 (415)
403 PF10366 Vps39_1: Vacuolar sor 55.8 1E+02 0.0023 25.0 8.3 27 532-558 41-67 (108)
404 PF13929 mRNA_stabil: mRNA sta 55.5 2.1E+02 0.0046 28.0 15.0 59 495-553 198-261 (292)
405 COG4455 ImpE Protein of avirul 54.6 1.8E+02 0.004 27.0 12.7 124 532-667 3-139 (273)
406 PF07163 Pex26: Pex26 protein; 54.4 1.8E+02 0.0038 28.3 10.4 88 537-627 90-184 (309)
407 KOG0686 COP9 signalosome, subu 53.6 2.2E+02 0.0048 29.2 11.4 90 500-591 151-255 (466)
408 COG2909 MalT ATP-dependent tra 52.0 4.2E+02 0.0091 30.4 30.0 189 337-526 469-686 (894)
409 KOG4077 Cytochrome c oxidase, 51.9 95 0.0021 25.8 7.1 47 549-595 68-114 (149)
410 COG4785 NlpI Lipoprotein NlpI, 51.0 2.1E+02 0.0046 26.6 18.1 63 396-458 99-162 (297)
411 PHA02537 M terminase endonucle 49.8 2.3E+02 0.005 26.8 10.5 106 540-665 93-210 (230)
412 PF09477 Type_III_YscG: Bacter 49.8 1.4E+02 0.003 24.2 8.1 79 275-356 21-99 (116)
413 PF04910 Tcf25: Transcriptiona 49.0 3.2E+02 0.0069 28.1 18.8 55 537-591 110-165 (360)
414 PF08311 Mad3_BUB1_I: Mad3/BUB 48.9 1.2E+02 0.0025 25.6 7.9 42 651-692 81-124 (126)
415 cd08819 CARD_MDA5_2 Caspase ac 48.9 1.2E+02 0.0026 23.4 6.9 38 307-345 48-85 (88)
416 PRK11619 lytic murein transgly 47.6 4.6E+02 0.01 29.6 42.6 233 442-688 254-497 (644)
417 PF14689 SPOB_a: Sensor_kinase 47.2 46 0.001 23.7 4.4 30 564-593 22-51 (62)
418 PF10366 Vps39_1: Vacuolar sor 47.0 1.6E+02 0.0034 24.0 8.0 28 226-253 40-67 (108)
419 PF11848 DUF3368: Domain of un 46.7 56 0.0012 21.8 4.5 31 136-166 14-44 (48)
420 PF11848 DUF3368: Domain of un 46.3 58 0.0013 21.7 4.5 32 271-302 13-44 (48)
421 PRK13800 putative oxidoreducta 46.2 5.8E+02 0.013 30.3 24.4 257 81-354 623-880 (897)
422 PF11846 DUF3366: Domain of un 45.9 65 0.0014 29.6 6.5 35 630-664 141-175 (193)
423 KOG0292 Vesicle coat complex C 45.2 21 0.00046 39.8 3.4 114 543-688 606-719 (1202)
424 cd08819 CARD_MDA5_2 Caspase ac 44.9 1.3E+02 0.0029 23.2 6.6 37 206-243 48-84 (88)
425 KOG2063 Vacuolar assembly/sort 44.6 5.7E+02 0.012 29.8 20.7 27 328-354 506-532 (877)
426 KOG0991 Replication factor C, 44.6 2.8E+02 0.006 26.2 10.2 45 521-566 230-274 (333)
427 PF11846 DUF3366: Domain of un 44.3 68 0.0015 29.4 6.4 51 577-627 120-170 (193)
428 KOG2758 Translation initiation 44.0 3.3E+02 0.0073 27.0 13.6 163 486-661 22-195 (432)
429 PF07163 Pex26: Pex26 protein; 44.0 2.1E+02 0.0045 27.8 9.2 87 333-419 90-181 (309)
430 KOG0686 COP9 signalosome, subu 43.8 3.9E+02 0.0083 27.6 13.0 58 297-354 152-215 (466)
431 KOG2297 Predicted translation 43.8 3.3E+02 0.0071 26.8 11.2 16 429-446 323-338 (412)
432 KOG0991 Replication factor C, 43.4 2.9E+02 0.0063 26.1 10.5 55 417-475 229-283 (333)
433 PF12968 DUF3856: Domain of Un 42.3 2E+02 0.0043 23.9 11.0 23 671-693 104-126 (144)
434 COG5159 RPN6 26S proteasome re 42.2 3.4E+02 0.0073 26.5 16.5 131 234-364 12-167 (421)
435 PF14669 Asp_Glu_race_2: Putat 42.1 2.7E+02 0.0058 25.3 13.9 22 329-350 184-205 (233)
436 PF04190 DUF410: Protein of un 42.1 3.3E+02 0.0073 26.4 16.8 159 206-390 2-170 (260)
437 PF15015 NYD-SP12_N: Spermatog 42.1 56 0.0012 33.3 5.5 49 640-688 235-283 (569)
438 PF13934 ELYS: Nuclear pore co 41.7 3.1E+02 0.0067 25.9 12.8 71 571-645 114-184 (226)
439 COG5191 Uncharacterized conser 41.7 25 0.00053 34.2 2.9 80 596-675 102-184 (435)
440 PF12862 Apc5: Anaphase-promot 41.2 81 0.0018 24.7 5.5 27 637-663 45-71 (94)
441 PF13934 ELYS: Nuclear pore co 41.0 3.2E+02 0.0069 25.9 12.6 93 559-661 73-168 (226)
442 PF04190 DUF410: Protein of un 40.9 3.5E+02 0.0076 26.3 17.4 27 394-420 88-114 (260)
443 PF10516 SHNi-TPR: SHNi-TPR; 40.8 58 0.0013 20.5 3.6 28 668-695 2-29 (38)
444 COG3947 Response regulator con 39.8 1.4E+02 0.0031 29.1 7.5 59 533-593 282-341 (361)
445 PF15469 Sec5: Exocyst complex 39.2 2.9E+02 0.0064 24.9 11.2 116 536-673 63-179 (182)
446 PF04034 DUF367: Domain of unk 39.0 2.3E+02 0.0051 23.7 7.7 65 596-660 61-126 (127)
447 PRK10564 maltose regulon perip 38.7 61 0.0013 31.7 5.1 40 532-571 259-298 (303)
448 KOG1498 26S proteasome regulat 38.4 4.6E+02 0.0099 26.9 19.3 194 497-717 50-262 (439)
449 PF07575 Nucleopor_Nup85: Nup8 37.9 1.4E+02 0.0031 33.1 8.6 61 259-321 404-464 (566)
450 KOG0545 Aryl-hydrocarbon recep 37.7 3.7E+02 0.008 25.6 11.7 64 604-667 233-298 (329)
451 PF11838 ERAP1_C: ERAP1-like C 37.7 4.3E+02 0.0094 26.4 17.4 186 201-386 45-262 (324)
452 KOG4507 Uncharacterized conser 37.7 1.6E+02 0.0035 31.7 8.1 130 563-695 569-704 (886)
453 PRK10564 maltose regulon perip 37.5 47 0.001 32.4 4.2 38 227-264 259-296 (303)
454 PRK13184 pknD serine/threonine 36.8 7.8E+02 0.017 29.2 23.1 47 411-457 534-580 (932)
455 KOG1524 WD40 repeat-containing 36.8 1.9E+02 0.0042 30.6 8.4 86 603-691 575-668 (737)
456 COG5108 RPO41 Mitochondrial DN 36.6 2.5E+02 0.0053 30.9 9.3 47 366-412 33-81 (1117)
457 KOG4077 Cytochrome c oxidase, 35.9 2.6E+02 0.0057 23.4 8.4 55 619-673 70-124 (149)
458 smart00777 Mad3_BUB1_I Mad3/BU 35.7 2.5E+02 0.0055 23.6 7.7 40 652-691 82-123 (125)
459 KOG2581 26S proteasome regulat 34.9 5.3E+02 0.012 26.7 16.3 124 543-666 139-280 (493)
460 PF14689 SPOB_a: Sensor_kinase 34.5 65 0.0014 23.0 3.6 25 534-558 27-51 (62)
461 PF10255 Paf67: RNA polymerase 34.5 1.4E+02 0.0029 31.1 7.1 63 606-693 127-190 (404)
462 KOG0292 Vesicle coat complex C 34.4 1.5E+02 0.0032 33.7 7.5 50 622-671 1071-1122(1202)
463 PF06957 COPI_C: Coatomer (COP 34.0 77 0.0017 33.0 5.3 39 628-666 293-333 (422)
464 PRK13342 recombination factor 33.5 5.9E+02 0.013 26.8 18.2 102 358-477 173-278 (413)
465 PF12796 Ank_2: Ankyrin repeat 32.8 1.8E+02 0.0039 22.1 6.3 15 246-260 40-54 (89)
466 cd00280 TRFH Telomeric Repeat 32.6 3.2E+02 0.0069 24.7 8.0 20 539-558 120-139 (200)
467 PF11663 Toxin_YhaV: Toxin wit 32.1 40 0.00086 28.4 2.4 34 540-575 105-138 (140)
468 KOG1308 Hsp70-interacting prot 31.6 40 0.00088 33.4 2.7 111 579-692 128-240 (377)
469 COG5187 RPN7 26S proteasome re 31.5 5E+02 0.011 25.4 9.6 92 531-625 116-216 (412)
470 PF11817 Foie-gras_1: Foie gra 31.5 1.5E+02 0.0032 28.6 6.6 17 575-591 188-204 (247)
471 PF08424 NRDE-2: NRDE-2, neces 31.4 5.6E+02 0.012 25.8 13.4 147 588-747 8-171 (321)
472 PF04090 RNA_pol_I_TF: RNA pol 31.3 2.6E+02 0.0055 25.8 7.5 92 634-725 42-134 (199)
473 PF12926 MOZART2: Mitotic-spin 31.2 2.5E+02 0.0054 21.7 7.3 42 485-526 29-70 (88)
474 PRK14015 pepN aminopeptidase N 30.7 9.6E+02 0.021 28.3 15.0 125 564-689 713-846 (875)
475 PF10155 DUF2363: Uncharacteri 30.7 3.3E+02 0.0071 22.9 9.1 114 107-222 3-126 (126)
476 TIGR02414 pepN_proteo aminopep 30.4 9.6E+02 0.021 28.3 15.1 152 534-689 676-836 (863)
477 COG0790 FOG: TPR repeat, SEL1 30.4 5.4E+02 0.012 25.3 18.0 129 514-647 92-236 (292)
478 KOG1498 26S proteasome regulat 30.1 6.3E+02 0.014 26.0 18.2 105 393-526 49-158 (439)
479 cd00280 TRFH Telomeric Repeat 30.0 4.2E+02 0.0092 24.0 11.7 45 638-683 116-160 (200)
480 KOG2396 HAT (Half-A-TPR) repea 29.9 7.2E+02 0.016 26.6 35.0 103 561-666 455-564 (568)
481 KOG2471 TPR repeat-containing 29.7 7.1E+02 0.015 26.5 11.6 61 640-703 213-273 (696)
482 COG1747 Uncharacterized N-term 29.4 7.4E+02 0.016 26.6 24.7 155 430-593 69-233 (711)
483 KOG4279 Serine/threonine prote 29.3 2.6E+02 0.0056 31.2 8.2 165 483-659 182-370 (1226)
484 KOG1114 Tripeptidyl peptidase 29.2 9.8E+02 0.021 28.0 17.5 122 482-620 1165-1286(1304)
485 KOG4567 GTPase-activating prot 28.5 5.4E+02 0.012 25.5 9.3 42 246-287 264-305 (370)
486 PRK11639 zinc uptake transcrip 27.8 2.2E+02 0.0048 25.4 6.7 36 275-310 40-75 (169)
487 PF11768 DUF3312: Protein of u 27.6 2.3E+02 0.005 30.5 7.5 58 96-153 411-473 (545)
488 PF14669 Asp_Glu_race_2: Putat 27.5 4.8E+02 0.01 23.8 14.3 58 468-525 136-207 (233)
489 COG5108 RPO41 Mitochondrial DN 27.4 2.4E+02 0.0053 30.9 7.6 46 164-209 33-80 (1117)
490 PF02184 HAT: HAT (Half-A-TPR) 27.2 1.3E+02 0.0028 18.2 3.2 25 648-673 2-26 (32)
491 PF04762 IKI3: IKI3 family; I 27.2 1.1E+03 0.024 28.0 15.0 27 502-528 815-843 (928)
492 PF12583 TPPII_N: Tripeptidyl 27.2 2E+02 0.0043 24.2 5.4 35 645-679 88-122 (139)
493 COG2178 Predicted RNA-binding 26.9 4.9E+02 0.011 23.8 8.4 106 378-492 20-149 (204)
494 PF08311 Mad3_BUB1_I: Mad3/BUB 26.9 3.8E+02 0.0083 22.5 9.2 43 548-590 81-124 (126)
495 COG4472 Uncharacterized protei 26.3 1.5E+02 0.0034 22.0 4.2 34 712-748 6-39 (88)
496 COG5191 Uncharacterized conser 26.3 1.2E+02 0.0026 29.7 4.7 79 561-641 102-184 (435)
497 PF11663 Toxin_YhaV: Toxin wit 26.0 90 0.002 26.4 3.4 30 72-103 109-138 (140)
498 PF02847 MA3: MA3 domain; Int 25.8 2.6E+02 0.0055 22.7 6.3 21 433-455 8-28 (113)
499 KOG2396 HAT (Half-A-TPR) repea 25.3 8.6E+02 0.019 26.1 31.8 239 446-693 299-556 (568)
500 PRK13341 recombination factor 24.2 1.1E+03 0.024 27.0 16.9 176 444-626 169-357 (725)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.9e-115 Score=995.18 Aligned_cols=697 Identities=30% Similarity=0.545 Sum_probs=687.4
Q ss_pred ccccccCCCCCcHHHHHHHhccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCCCChhhHH
Q 004425 49 VSCSERTLLFNDWPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWT 128 (754)
Q Consensus 49 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 128 (754)
+...+.+|+..+|..++++|.+.+.+..+..++..+.+.|..++..++|+||.+|++.|+++.|.++|++|++||.++||
T Consensus 77 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n 156 (857)
T PLN03077 77 MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWN 156 (857)
T ss_pred HHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcC
Q 004425 129 SLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSG 208 (754)
Q Consensus 129 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 208 (754)
+||++|++.|++++|+++|++|...|+.||..||+.+|++|+..+++..+.+++..|.+.|+.||..++|+||.+|+++|
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g 236 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHH
Q 004425 209 CFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVK 288 (754)
Q Consensus 209 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 288 (754)
++++|.++|++|+.+|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++..|.+
T Consensus 237 ~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 237 DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred CHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHH
Q 004425 289 FGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVI 368 (754)
Q Consensus 289 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 368 (754)
.|+.||..+||+|+.+|+++|++++|.++|++|..+|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 317 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll 396 (857)
T PLN03077 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396 (857)
T ss_pred hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHH
Q 004425 369 DGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDV 448 (754)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A 448 (754)
.+|++.|+++.|.++++.+.+.|+.++..++++|+++|+++|++++|.++|++|.++|.++||++|.+|++ .|+.++|
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~--~g~~~eA 474 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL--NNRCFEA 474 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH--CCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 004425 449 MVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR 528 (754)
Q Consensus 449 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 528 (754)
+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..++|+|+++|+++|++++|.++|+.+ .+
T Consensus 475 ~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~ 552 (857)
T PLN03077 475 LIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EK 552 (857)
T ss_pred HHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CC
Confidence 999999986 6999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHH
Q 004425 529 DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMV 608 (754)
Q Consensus 529 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 608 (754)
|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..||++|+
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999996689999999999999
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 004425 609 DLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAK 688 (754)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 688 (754)
++|+++|++++|.+++++|+.+||..+|++|+.+|+.+|+.+.|+.+.+++++++|+++..|..|+++|+..|+|++|.+
T Consensus 633 ~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 633 DLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred HHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCCCCCc
Q 004425 689 VRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMKLKVKDSSA 749 (754)
Q Consensus 689 ~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 749 (754)
+++.|+++|++|+||+|||++++++|.|++||++||+.++||.+|+.|..+|++.||.|+.
T Consensus 713 vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~ 773 (857)
T PLN03077 713 VRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773 (857)
T ss_pred HHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999974
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-86 Score=741.30 Aligned_cols=531 Identities=31% Similarity=0.525 Sum_probs=519.9
Q ss_pred CCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCC-CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHH
Q 004425 222 YKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSD-FEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNA 300 (754)
Q Consensus 222 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 300 (754)
.++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++.+.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3467789999999999999999999999999865 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHH
Q 004425 301 IVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELG 380 (754)
Q Consensus 301 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 380 (754)
|+++|+++|++++|.++|++|.+||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC
Q 004425 381 LQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGM 460 (754)
Q Consensus 381 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~ 460 (754)
.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|..+|.++||+||.+|++ .|+.++|+++|++|.+.|+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~--~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL--HGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHH
Q 004425 461 EPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAY 540 (754)
Q Consensus 461 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 540 (754)
.||..||++++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHH
Q 004425 541 ALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEA 620 (754)
Q Consensus 541 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 620 (754)
+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998789999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCcc
Q 004425 621 MNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSK 700 (754)
Q Consensus 621 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 700 (754)
.+++++|+..|+..+|++|+.+|+.+|+.+.|+.+++++++++|++..+|..|+++|++.|+|++|.+++++|+++|++|
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCCCCC-ccccCC
Q 004425 701 EAGCSWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMKLKVKDSS-AFELQD 754 (754)
Q Consensus 701 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~ 754 (754)
.||+|||++++++|.|++||++||+..+||.+|++|..+|++.||+|+ +.+++|
T Consensus 562 ~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~ 616 (697)
T PLN03081 562 HPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPD 616 (697)
T ss_pred CCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhcc
Confidence 999999999999999999999999999999999999999999999997 444443
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-81 Score=720.05 Aligned_cols=573 Identities=24% Similarity=0.422 Sum_probs=545.6
Q ss_pred CCChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHH
Q 004425 121 VRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSL 200 (754)
Q Consensus 121 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 200 (754)
.++..++|.++.+|++.|++++|+.+|+.|.+.|+.|+..+|..++++|.+.+.++.+.+++..+.+.|..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHH
Q 004425 201 ISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGK 280 (754)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 280 (754)
|++|+++|+++.|.++|++|+++|+++||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccC
Q 004425 281 QLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCD 360 (754)
Q Consensus 281 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 360 (754)
+++..+.+.|+.||..++|+|+++|+++|++++|.++|++|.++|+++||++|.+|++.|++++|+++|.+|.+.|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhh
Q 004425 361 SSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEK 440 (754)
Q Consensus 361 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 440 (754)
..||+.++.+|++.|+++.|.+++..+.+.|+.||..+|++|+.+|+++|++++|.++|++|..+|.++||++|.+|++
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~- 366 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK- 366 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004425 441 IADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQ 520 (754)
Q Consensus 441 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 520 (754)
.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..++|+|+++|+++|++++|.+
T Consensus 367 -~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 367 -NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred -CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC
Q 004425 521 IFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI 600 (754)
Q Consensus 521 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 600 (754)
+|++|.++|+++||++|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|.++.+.+++..+.+ .|+.++
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~ 523 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFD 523 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCcc
Confidence 99999999999999999999999999999999999986 6999999999999999999999999999999998 699999
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcc--CCCCcchHHHHHHHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDL--EPKDAGSFILVSNMYA 678 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~ 678 (754)
..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|..+++++.+. .|+ ..+|..+...|.
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~ 600 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACS 600 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHh
Confidence 888888888888888888888888887 678888888888888888888888888887764 444 667777778888
Q ss_pred hcCCchHHHHHHHHHh-hCCCcc
Q 004425 679 GQGMLDEAAKVRTTMN-DLRLSK 700 (754)
Q Consensus 679 ~~g~~~~a~~~~~~m~-~~~~~~ 700 (754)
+.|++++|.++|+.|. ..|+..
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCC
Confidence 8888888888888887 456543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-70 Score=613.79 Aligned_cols=522 Identities=16% Similarity=0.200 Sum_probs=469.5
Q ss_pred CCCChhhhHHHHHHHHccCChhHHHHHhccCCCCC-----hhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHH
Q 004425 89 SQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRS-----AITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCS 163 (754)
Q Consensus 89 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 163 (754)
..++...|..++..|++.|++++|.++|++|+.++ ...++.++.+|.+.|..++|+.+|+.|.. ||..||+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 34566778888899999999999999999996654 45567778889999999999999999864 8999999
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCC----CCCcchHHHHHHHHHHcC
Q 004425 164 VILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLA----YKDVRCVNFMILEYNKAG 239 (754)
Q Consensus 164 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g 239 (754)
.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|. .||..+||.||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999998 578999999999999999
Q ss_pred ChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHH--hcCCCChhHHHHHHHHHHhcCChHHHHHH
Q 004425 240 ESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVK--FGVVREISVGNAIVTMYGKHGMSEEAERM 317 (754)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 317 (754)
++++|+++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred HHccCC----CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCC
Q 004425 318 FDAISE----RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYL 393 (754)
Q Consensus 318 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 393 (754)
|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|+.|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999975 5779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHhcCC----CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004425 394 SDVRLGTALVDIYAKGGDLKSARMLLDGFS----CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSR 469 (754)
Q Consensus 394 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 469 (754)
||..+|++||.+|+++|++++|.++|++|. .+|..+||.||.+|++ .|+.++|+++|++|.+.|+.||..||+.
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k--~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE--GNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 999999999999999999999999999995 7899999999999999 9999999999999999999999999999
Q ss_pred HHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH------HhccCCCChhHHHHHHHHHHHc
Q 004425 470 LLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQI------FKGISDRDIVSWNAMLSAYALH 543 (754)
Q Consensus 470 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~------~~~~~~~~~~~~~~li~~~~~~ 543 (754)
++.+|++.|+++.|.+++.+|.+.|+.||..+|++++.+|.+ ++++|..+ |+.+...+...|
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~n~w---------- 827 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIENKW---------- 827 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhccccccccch----------
Confidence 999999999999999999999999999999999999976432 34444444 333322333333
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHH
Q 004425 544 GLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNL 623 (754)
Q Consensus 544 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 623 (754)
.++|+.+|++|.+.|+.||..||+.++.+++..+..+.+..+++.|.. .+..|+..+|+++++++++. .++|..+
T Consensus 828 --~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~--~~~A~~l 902 (1060)
T PLN03218 828 --TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY--DPRAFSL 902 (1060)
T ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--hHHHHHH
Confidence 456999999999999999999999999888888888888888888766 47778888999999998542 4789999
Q ss_pred HHhC---CCCCCH
Q 004425 624 INSS---PFSESP 633 (754)
Q Consensus 624 ~~~~---~~~p~~ 633 (754)
+++| ++.|+.
T Consensus 903 ~~em~~~Gi~p~~ 915 (1060)
T PLN03218 903 LEEAASLGVVPSV 915 (1060)
T ss_pred HHHHHHcCCCCCc
Confidence 9987 566654
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-69 Score=606.04 Aligned_cols=474 Identities=22% Similarity=0.323 Sum_probs=461.0
Q ss_pred CCChhhHHHHHHHHhcCCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHH
Q 004425 121 VRSAITWTSLIKGYLDDGDYESVLGIACDMYRSE-EKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTS 199 (754)
Q Consensus 121 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 199 (754)
.++..+|+.+|.++++.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.+++..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4477899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHH
Q 004425 200 LISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEG 279 (754)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 279 (754)
|+++|+++|++++|.++|++|+++|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCccc
Q 004425 280 KQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICC 359 (754)
Q Consensus 280 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 359 (754)
.+++..+.+.|+.+|..+|++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhh
Q 004425 360 DSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFME 439 (754)
Q Consensus 360 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 439 (754)
|..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|..+|.++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHH
Q 004425 440 KIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIK-TGYAADVIVGNALITMYAKCGSIDGA 518 (754)
Q Consensus 440 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A 518 (754)
.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|
T Consensus 404 --~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 404 --HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred --cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 999999999999999999999999999999999999999999999999986 69999999999999999999999999
Q ss_pred HHHHhccC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 004425 519 FQIFKGIS-DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYG 596 (754)
Q Consensus 519 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 596 (754)
.+++++|. +|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|.+ .|
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g 558 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KG 558 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cC
Confidence 99999996 58999999999999999999999999999976 6676 46999999999999999999999999999 58
Q ss_pred CCC
Q 004425 597 LRP 599 (754)
Q Consensus 597 ~~p 599 (754)
+..
T Consensus 559 ~~k 561 (697)
T PLN03081 559 LSM 561 (697)
T ss_pred Ccc
Confidence 754
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.8e-68 Score=592.03 Aligned_cols=532 Identities=15% Similarity=0.155 Sum_probs=482.5
Q ss_pred cCCCCCcHHHHHHHhccCCCcchhHHHHHHHHHhCC-CCChhhhHHHHHHHHccCChhHHHHHhccCCCCChhhHHHHHH
Q 004425 54 RTLLFNDWPQLVKISIGSGDLKLGQAVHAFLLKSGS-QNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIK 132 (754)
Q Consensus 54 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~ 132 (754)
..++...|..++..|.+.|++..|.++|+.|.+.|+ .++..+++.++..|.+.|.+++|..+|..|+.||..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345677899999999999999999999999999995 5677888999999999999999999999999999999999999
Q ss_pred HHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhH
Q 004425 133 GYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFRE 212 (754)
Q Consensus 133 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 212 (754)
+|++.|+++.|.++|++|.+.|+.||..+|+++|.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCC----CCCcchHHHHHHHHHHcCChhHHHHHHHHhHH--CCCCCCcchHHHHHHHHhccCCchHHHHHHHHH
Q 004425 213 AENVFRGLA----YKDVRCVNFMILEYNKAGESEMAFHVFVHLLS--SDFEPNDYTFTNVISVCYENLGVEEGKQLHGLA 286 (754)
Q Consensus 213 A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 286 (754)
|.++|++|. .||..+||.||.+|++.|++++|.++|++|.. .|+.||..||+++|.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999996 46999999999999999999999999999986 679999999999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC----CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChh
Q 004425 287 VKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE----RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSS 362 (754)
Q Consensus 287 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 362 (754)
.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999999999999974 799999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC----CCChhhHHHHHHHHh
Q 004425 363 CLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFS----CKYTAEFNAILSGFM 438 (754)
Q Consensus 363 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~ 438 (754)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..+|+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 689999999999999
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 004425 439 EKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGA 518 (754)
Q Consensus 439 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 518 (754)
+ .|+.++|.++|.+|.+.|+.||..+|+.++..|.+ .++++..+.+.+...+. ...+...+..+.|
T Consensus 766 k--~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~~A 831 (1060)
T PLN03218 766 R--KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDS----------GRPQIENKWTSWA 831 (1060)
T ss_pred H--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhc----------cccccccchHHHH
Confidence 9 99999999999999999999999999999977642 45555544433332110 0111122334568
Q ss_pred HHHHhccCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004425 519 FQIFKGISD----RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQI 594 (754)
Q Consensus 519 ~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 594 (754)
..+|++|.+ ||..+|+.++.++++.+..+.+..+++.|...+..|+..+|+.++.+|++. .++|..+|++|..
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~- 908 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS- 908 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH-
Confidence 888888853 788888888888888888888888888888888888888888888887432 3678888888888
Q ss_pred hCCCCCcc
Q 004425 595 YGLRPILE 602 (754)
Q Consensus 595 ~~~~p~~~ 602 (754)
.|+.|+..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 68888874
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.8e-35 Score=343.55 Aligned_cols=626 Identities=12% Similarity=0.073 Sum_probs=391.2
Q ss_pred CCcHHHHHHHhccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCC---CChhhHHHHHHHH
Q 004425 58 FNDWPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLV---RSAITWTSLIKGY 134 (754)
Q Consensus 58 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 134 (754)
...+..+...+...|++.+|..+++.+.+.. +.+...+..+...+...|++++|...|+.... .+..++..++..+
T Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 237 (899)
T TIGR02917 159 LYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATIL 237 (899)
T ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3455566666677777777777777766543 34555666666666677777777777766522 2445566666666
Q ss_pred hcCCChhHHHHHHHHHHhCCCC--------------------------------CC-hhhHHHHHHHhccCCChHHHHHH
Q 004425 135 LDDGDYESVLGIACDMYRSEEK--------------------------------FN-EHTCSVILEACSLLEDRIFGEQI 181 (754)
Q Consensus 135 ~~~~~~~~a~~~~~~m~~~g~~--------------------------------p~-~~t~~~ll~~~~~~~~~~~a~~~ 181 (754)
...|++++|...++.+.+.... |+ ...+..+...+...|+++.|...
T Consensus 238 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 317 (899)
T TIGR02917 238 IEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQY 317 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666655443211 11 01111122233345555555555
Q ss_pred HHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCC---CcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCC
Q 004425 182 HAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYK---DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEP 258 (754)
Q Consensus 182 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 258 (754)
++.+.+.. +.+...+..+...+.+.|++++|...++.+... +...++.+...+.+.|++++|.++|+++.+... .
T Consensus 318 ~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 395 (899)
T TIGR02917 318 LNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-E 395 (899)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-C
Confidence 55555443 234455555666666666666666666655432 444566666666677777777777766655421 1
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhc---------------------------------CCCChhHHHHHHHHH
Q 004425 259 NDYTFTNVISVCYENLGVEEGKQLHGLAVKFG---------------------------------VVREISVGNAIVTMY 305 (754)
Q Consensus 259 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g---------------------------------~~~~~~~~~~li~~~ 305 (754)
+...+..+...+...|+.++|.+.+..+.+.. .+.+..++..+...|
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 475 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIY 475 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 23334444444455555555555555444432 223444555555555
Q ss_pred HhcCChHHHHHHHHccCC---CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHH
Q 004425 306 GKHGMSEEAERMFDAISE---RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQ 382 (754)
Q Consensus 306 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 382 (754)
...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+...|+.++|..
T Consensus 476 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 476 LGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555432 233444555555555566666666665555432 2234455555555666666666666
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC
Q 004425 383 LHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAG 459 (754)
Q Consensus 383 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g 459 (754)
.++.+.+.+ +.+...+..++..|.+.|++++|..+++.+. +.+...|..+...+.. .|++++|+..|+++.+..
T Consensus 555 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 555 WLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA--AGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhC
Confidence 666665543 3344555566666666777777766666654 3345566667777777 777777777777776542
Q ss_pred CCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHH
Q 004425 460 MEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAM 536 (754)
Q Consensus 460 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 536 (754)
+.+...+..+...+...|++++|..+++.+.+.. +.+...+..++..+...|++++|.++++.+.+ .+...|..+
T Consensus 632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 709 (899)
T TIGR02917 632 -PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709 (899)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHH
Confidence 2234556666666777777777777777776543 34456667777777777777777777776643 344566777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCC
Q 004425 537 LSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGR 616 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 616 (754)
...+...|++++|+..|+++.+. .|+..++..+..++.+.|++++|.+.++.+.+ ..+.+...+..++..|.+.|+
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~ 785 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKD 785 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcC
Confidence 77777888888888888887773 45556667777778888888888888888766 344556677788888888888
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 617 LSEAMNLINSS--PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 617 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
+++|.+.|+++ ..++++.+++.+...+...|+ .+|+..+++++++.|+++..+..++.+|...|++++|.+.++++.
T Consensus 786 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 786 YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888766 223467788888888888888 778888888888888888888888888888888888888888876
Q ss_pred hCC
Q 004425 695 DLR 697 (754)
Q Consensus 695 ~~~ 697 (754)
+.+
T Consensus 865 ~~~ 867 (899)
T TIGR02917 865 NIA 867 (899)
T ss_pred hhC
Confidence 644
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.5e-35 Score=343.71 Aligned_cols=579 Identities=13% Similarity=0.047 Sum_probs=476.2
Q ss_pred HHHccCChhHHHHHhccCCC---CChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHH
Q 004425 102 LYAKFNRLDVAQKLFDGMLV---RSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFG 178 (754)
Q Consensus 102 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 178 (754)
.+...|++++|...|+.... .+...+..+...+.+.|++++|+..++.+.+.. +.+...+..+...+...|+++.|
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34455566666665555421 234556666667777777777777777776543 23556666777777777788888
Q ss_pred HHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCC---CcchHHHHHHHHHHcCChhHHHHHHHHhHHCC
Q 004425 179 EQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYK---DVRCVNFMILEYNKAGESEMAFHVFVHLLSSD 255 (754)
Q Consensus 179 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 255 (754)
.++++.+.+.. +.+...+..+...+...|++++|.+.|+.+... +...+..++..+.+.|++++|+++++++...
T Consensus 383 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 460 (899)
T TIGR02917 383 AEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK- 460 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Confidence 87777776653 335566667777777778888887777765432 3345666777888889999999998888765
Q ss_pred CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC---CCchhHHHH
Q 004425 256 FEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE---RNLISWTAL 332 (754)
Q Consensus 256 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 332 (754)
.+++..++..+...+...|+.++|.+.++.+.+.. +.+...+..+...+...|++++|.+.|+++.. .+..++..+
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 34467789999999999999999999999998764 44566788899999999999999999999864 467788999
Q ss_pred HHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCH
Q 004425 333 ISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDL 412 (754)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 412 (754)
...+.+.|+.++|...+.++...+ ..+...+..+...+...|+++.|..+++.+.+.. +.+...+..+...|.+.|++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998764 3455677888899999999999999999998754 55678899999999999999
Q ss_pred HHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHH
Q 004425 413 KSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAY 489 (754)
Q Consensus 413 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 489 (754)
++|...|+.+. +.+...|..+...+.. .|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.
T Consensus 618 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 618 NKAVSSFKKLLALQPDSALALLLLADAYAV--MKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999875 4466678889999999 999999999999998753 33467889999999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 004425 490 SIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDIS 567 (754)
Q Consensus 490 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 567 (754)
+.+.+ +.+...+..+...|.+.|++++|...|+.+.. |+..++..++.++.+.|++++|.+.++++.+.. +.+...
T Consensus 695 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~ 772 (899)
T TIGR02917 695 LQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVL 772 (899)
T ss_pred HHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 98876 56777888899999999999999999998853 666778889999999999999999999999843 235568
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 004425 568 ILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKL 645 (754)
Q Consensus 568 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 645 (754)
+..+...|...|++++|..+|+++.+ ..+++...+..++..+...|+ .+|+++++++ ...| ++..+..+...+..
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 88889999999999999999999987 345567789999999999999 8899999876 3344 67888899999999
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 646 MANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
.|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 850 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999885
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=3e-25 Score=260.91 Aligned_cols=615 Identities=12% Similarity=0.015 Sum_probs=458.3
Q ss_pred HHHHHHHhccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCC--CCh-hhH----------
Q 004425 61 WPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLV--RSA-ITW---------- 127 (754)
Q Consensus 61 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~-~~~---------- 127 (754)
+..-.+.+...++.+.|.+.+..+.... +.++.++..+...+.+.|+.++|.+.+++..+ |+. ..+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 4455667788899999999999888654 44677888899999999999999999998843 322 221
Q ss_pred ------HHHHHHHhcCCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHH
Q 004425 128 ------TSLIKGYLDDGDYESVLGIACDMYRSEEKFNEH-TCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSL 200 (754)
Q Consensus 128 ------~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 200 (754)
-.+.+.+.+.|++++|+..|+.+.+.. +|+.. ............|+.+.|.+.++.+.+.. +.+...+..+
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L 187 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL 187 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 223446888999999999999998653 33322 11112222335689999999999999885 4467788889
Q ss_pred HHHhHhcCCHhHHHHHhccCCCCCcc------hH-----------------HHHHHHHHHcCChhHHHHHHHHhHHCCCC
Q 004425 201 ISMYFHSGCFREAENVFRGLAYKDVR------CV-----------------NFMILEYNKAGESEMAFHVFVHLLSSDFE 257 (754)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~~~~~~------~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 257 (754)
...+...|+.++|+..|+++...... .| ...+..+-.....+.|...+.++......
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 99999999999999999987542211 11 11111111122234555555555443223
Q ss_pred CCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC--CCc---hhHHHH
Q 004425 258 PNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE--RNL---ISWTAL 332 (754)
Q Consensus 258 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l 332 (754)
|+... ...-..+...|++++|...+++.++.. +.+..++..|...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 268 p~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 268 PAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred cchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 33221 123455677899999999999998864 44778889999999999999999999998764 322 223222
Q ss_pred ------------HHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHH
Q 004425 333 ------------ISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGT 400 (754)
Q Consensus 333 ------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 400 (754)
...+.+.|++++|...|++.++.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 345778999999999999999863 2345566777888999999999999999999864 33455666
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCCCh------------hhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH-HHH
Q 004425 401 ALVDIYAKGGDLKSARMLLDGFSCKYT------------AEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP-VTF 467 (754)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~~~~~~~------------~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~ 467 (754)
.+...|. .++.++|..+++.+..... ..+..+...+.. .|++++|++.|++..+. .|+. ..+
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~--~g~~~eA~~~~~~Al~~--~P~~~~~~ 498 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN--QGKWAQAAELQRQRLAL--DPGSVWLT 498 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH--CCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 6777775 4678999999988763221 124445566777 99999999999999876 5654 566
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----Chh---------HHH
Q 004425 468 SRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR----DIV---------SWN 534 (754)
Q Consensus 468 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~---------~~~ 534 (754)
..+...+.+.|++++|...++.+.+.. +.+...+..+...+.+.|+.++|...++.+... +.. .+.
T Consensus 499 ~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l 577 (1157)
T PRK11447 499 YRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVL 577 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHH
Confidence 778889999999999999999998754 335555556666778899999999999988642 111 123
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhc
Q 004425 535 AMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRA 614 (754)
Q Consensus 535 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 614 (754)
.+...+...|+.++|+.+++. .+++...+..+...+.+.|++++|+..|+++.+. -+.+...+..++.+|...
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 456778899999999999872 2334456778888999999999999999999772 334567888999999999
Q ss_pred CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc------hHHHHHHHHHhcCCchHH
Q 004425 615 GRLSEAMNLINSSP-FSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG------SFILVSNMYAGQGMLDEA 686 (754)
Q Consensus 615 g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a 686 (754)
|++++|++.++... ..| +...+..+..++...|+.++|...++++++..|+++. .+..++.++...|++++|
T Consensus 651 g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 651 GDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999763 344 5777888889999999999999999999998876543 566789999999999999
Q ss_pred HHHHHHHhh
Q 004425 687 AKVRTTMND 695 (754)
Q Consensus 687 ~~~~~~m~~ 695 (754)
...+++...
T Consensus 731 ~~~y~~Al~ 739 (1157)
T PRK11447 731 LETYKDAMV 739 (1157)
T ss_pred HHHHHHHHh
Confidence 999988753
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.1e-24 Score=256.29 Aligned_cols=586 Identities=12% Similarity=0.022 Sum_probs=433.3
Q ss_pred HHHHHHHccCChhHHHHHhccCC--CC-ChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhH------------
Q 004425 98 NLINLYAKFNRLDVAQKLFDGML--VR-SAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTC------------ 162 (754)
Q Consensus 98 ~li~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~------------ 162 (754)
..+......++.+.|.+.++++. .| |+..+..++..+.+.|+.++|.+.+++..+.. |+...+
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCC
Confidence 34455667899999999998873 33 77889999999999999999999999998764 433322
Q ss_pred -----HHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHH-HHHHHHHhHhcCCHhHHHHHhccCCCC---CcchHHHHHH
Q 004425 163 -----SVILEACSLLEDRIFGEQIHAFAIKSGFENNVFV-GTSLISMYFHSGCFREAENVFRGLAYK---DVRCVNFMIL 233 (754)
Q Consensus 163 -----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~ 233 (754)
....+.+...|++++|.+.++.+.+.+ +++... ...+.......|+.++|++.|+++... +...+..+..
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 223346778899999999999998764 333322 111122223469999999999988753 5557888889
Q ss_pred HHHHcCChhHHHHHHHHhHHCCCC----------------CCcc---hHHHHHHHHhccCCchHHHHHHHHHHHhcCCCC
Q 004425 234 EYNKAGESEMAFHVFVHLLSSDFE----------------PNDY---TFTNVISVCYENLGVEEGKQLHGLAVKFGVVRE 294 (754)
Q Consensus 234 ~~~~~g~~~~A~~~~~~m~~~g~~----------------p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 294 (754)
.+...|+.++|++.|+++...... ++.. .+...+..+-.....+.+...+....+....|+
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 999999999999999998764211 0000 111111111122223445555555444332333
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHccCC--C-CchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccC-hhhH------
Q 004425 295 ISVGNAIVTMYGKHGMSEEAERMFDAISE--R-NLISWTALISGYVRSGHGGKAINGFLEFLDLGICCD-SSCL------ 364 (754)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~------ 364 (754)
.. .......+...|++++|+..|++..+ | +...+..+...|.+.|++++|+..|++..+...... ...+
T Consensus 270 ~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 270 FR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred hH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 22 12345667789999999999998865 3 667889999999999999999999999887542211 1111
Q ss_pred ------HHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHH
Q 004425 365 ------ATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILS 435 (754)
Q Consensus 365 ------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 435 (754)
......+.+.|++++|...++++++.. +.+...+..+...|...|++++|++.|++.. ..+...+..+..
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 112345678999999999999999864 3456677788999999999999999999876 344556666666
Q ss_pred HHhhhhcCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 004425 436 GFMEKIADDEEDVMVLFSQQRLAGME--------PDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALIT 507 (754)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 507 (754)
.|. .++.++|+.+++.+...... .....+..+...+...|++++|.+.++++++.. +-+..++..+..
T Consensus 428 l~~---~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~ 503 (1157)
T PRK11447 428 LYR---QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQ 503 (1157)
T ss_pred HHH---hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 664 45789999988776432100 001234456677888999999999999999865 346677888999
Q ss_pred HHHhcCCHHHHHHHHhccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHH
Q 004425 508 MYAKCGSIDGAFQIFKGISD--R-DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI---------SILGVLQAC 575 (754)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~ 575 (754)
.|.+.|++++|...|+++.+ | +...+..+...+...|+.++|+..++++......++.. .+..+...+
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999998743 3 44555556666778999999999998865433333322 233456678
Q ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 004425 576 IYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSI 653 (754)
Q Consensus 576 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 653 (754)
...|+.++|..+++ ..+.+...+..+...|.+.|++++|++.+++. ...| ++..+..++..+...|+.++|+
T Consensus 584 ~~~G~~~eA~~~l~------~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLR------QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHH------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 89999999999986 13445667788999999999999999999876 3445 6889999999999999999999
Q ss_pred HHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 654 LASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 654 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
..++++.+..|+++..+..++.++...|++++|...++++.....
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 999999999999999999999999999999999999999876543
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=2.5e-21 Score=216.86 Aligned_cols=380 Identities=10% Similarity=-0.017 Sum_probs=254.7
Q ss_pred HHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHH
Q 004425 301 IVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELG 380 (754)
Q Consensus 301 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 380 (754)
++..+.+.++++.++++.+ ....+. ..-.-..+....+...++...+..|-+.. .-+....--+---..+.|+.++|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a 395 (987)
T PRK09782 319 TLPVLLKEGQYDAAQKLLA-TLPANE-MLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREA 395 (987)
T ss_pred HHHHHHhccHHHHHHHHhc-CCCcch-HHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHH
Confidence 3666777788887776633 222222 11111112223456667777676666541 11222222233334567888888
Q ss_pred HHHHHHHHHh-C-CCcchhHHHHHHHHHHhCCC---HHHHHHH-------------------------HhcCC---CC--
Q 004425 381 LQLHGFAIKH-G-YLSDVRLGTALVDIYAKGGD---LKSARML-------------------------LDGFS---CK-- 425 (754)
Q Consensus 381 ~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~-------------------------~~~~~---~~-- 425 (754)
.++++..... + -..+.....-|+..|.+.+. ...+..+ +.... ..
T Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~ 475 (987)
T PRK09782 396 ADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSY 475 (987)
T ss_pred HHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCC
Confidence 8888887762 1 22344455577777777665 2223222 11111 12
Q ss_pred ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHH
Q 004425 426 YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNAL 505 (754)
Q Consensus 426 ~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 505 (754)
+...|..+...+.. ++.++|+..+.+.... .|+......+..++...|++++|...++.+... +|+...+..+
T Consensus 476 ~~~a~~~LG~~l~~---~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~l 548 (987)
T PRK09782 476 DAAAWNRLAKCYRD---TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAA 548 (987)
T ss_pred CHHHHHHHHHHHHh---CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHH
Confidence 34455555555543 6777788877777765 466554444455556888999998888887554 3444455667
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCChhHHHH---HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004425 506 ITMYAKCGSIDGAFQIFKGISDRDIVSWNA---MLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSE 582 (754)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 582 (754)
...+.+.|++++|...|+...+.+...++. +.......|++++|+..+++.++ ..|+...+..+..++.+.|+++
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHH
Confidence 778888899999999888776543322222 23333445899999999998888 5677778888888888999999
Q ss_pred HHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 004425 583 GGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRL 659 (754)
Q Consensus 583 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 659 (754)
+|...+++... ..|+ ...+..+..++...|++++|++.+++. ...| ++..+..+..++...|++++|+..++++
T Consensus 627 eA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 627 AAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999988866 3444 567778888888899999999888865 3445 6888888889999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 660 LDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 660 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++++|+++......+++..+..+++.|.+.+++--.
T Consensus 704 l~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 704 IDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999888888888888888888888887775543
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=2e-20 Score=209.72 Aligned_cols=559 Identities=11% Similarity=-0.031 Sum_probs=363.2
Q ss_pred CChhHHHHHhccCCC--C-ChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHH
Q 004425 107 NRLDVAQKLFDGMLV--R-SAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHA 183 (754)
Q Consensus 107 ~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 183 (754)
|++++|...|+...+ | +..++..|...|.+.|+.++|+..+++..+. .|+...|..++..+ ++.+.|..+++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHH
Confidence 666666666666522 2 4556666666667777777777776666554 23333333333222 66666666666
Q ss_pred HHHHHCCCCcHHHHHHHHHH--------hHhcCCHhHHHHHhccCCCCC--cc-hHHHHHHHHHHcCChhHHHHHHHHhH
Q 004425 184 FAIKSGFENNVFVGTSLISM--------YFHSGCFREAENVFRGLAYKD--VR-CVNFMILEYNKAGESEMAFHVFVHLL 252 (754)
Q Consensus 184 ~m~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~--~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 252 (754)
++.+.. +.+..++..+... |.+.+...++++ .+ ...++ .. ..-.+...|.+.|++++|++++.++.
T Consensus 133 ~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr-~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 133 ELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DA-TFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-Hh-hhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 666654 2234444444443 666555555555 22 22222 22 23333667777777777777777777
Q ss_pred HCCCCCCcchHHHHHHHHhc-cCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC-----CCc
Q 004425 253 SSDFEPNDYTFTNVISVCYE-NLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE-----RNL 326 (754)
Q Consensus 253 ~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~ 326 (754)
+.+.. +..-...+-.++.. .++ +.+..++.. .+..+..+...+.+.|.+.|+.++|.++++++.. |..
T Consensus 210 k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 210 QQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred hcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 76432 22224444445554 244 555555332 3335666777777777777777777777777653 111
Q ss_pred hh------------------------------HHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCC
Q 004425 327 IS------------------------------WTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSN 376 (754)
Q Consensus 327 ~~------------------------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 376 (754)
.+ .-.++..+.+.++++.+.++. ...|.......-..+....+.
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHHHHHHhhccccCc
Confidence 11 112255566677777555442 134444432111122233466
Q ss_pred hHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCC--CC----hhhHHHHHHHHhhhhcCC---HHH
Q 004425 377 LELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSC--KY----TAEFNAILSGFMEKIADD---EED 447 (754)
Q Consensus 377 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~---~~~ 447 (754)
..++...+..|.+.. +-+.....-+.-...+.|+.++|..+|++.-. ++ ...-+-++..|.. .+. ..+
T Consensus 358 ~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~ 434 (987)
T PRK09782 358 KAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES--HPYLATPAK 434 (987)
T ss_pred hhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh--CCcccchHH
Confidence 777777777776642 22334444444446678999999999987753 21 2234466677766 544 333
Q ss_pred HHHH----------------------HHHHHH-cCCCC---CHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhH
Q 004425 448 VMVL----------------------FSQQRL-AGMEP---DPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIV 501 (754)
Q Consensus 448 A~~~----------------------~~~m~~-~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 501 (754)
++.+ +..... .+..| +...|..+..++.. ++.++|...+....... |+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHH
Confidence 3333 111111 12223 34556666655555 78888999888877654 55444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhc
Q 004425 502 GNALITMYAKCGSIDGAFQIFKGISD--RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYS 578 (754)
Q Consensus 502 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~ 578 (754)
...+...+...|++++|...|+++.. ++...+..+..++.+.|+.++|...+++.++. .|+.. .+..+...+...
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhC
Confidence 44445556789999999999997753 45556777888899999999999999999984 45543 333444556677
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 004425 579 GLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILAS 656 (754)
Q Consensus 579 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 656 (754)
|++++|...+++..+ +.|+...+..+..++.+.|+.++|++.+++. ...| ++..+..+..++...|+.++|+..+
T Consensus 590 Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999965 5677888999999999999999999999876 4556 5888899999999999999999999
Q ss_pred HHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 657 KRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 657 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+++++++|+++..+..++.+|...|++++|+..+++..+.
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999987653
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=4.5e-21 Score=189.63 Aligned_cols=448 Identities=14% Similarity=0.089 Sum_probs=345.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 004425 230 FMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHG 309 (754)
Q Consensus 230 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 309 (754)
.+..-..+.|++++|++.-...-+.+. -+..+...+-..+.+..+.+...+--....+. .+.-..+|+.+.+.+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhc
Confidence 344455677888888776554443321 11122222223334444444433322222222 2334667888888888899
Q ss_pred ChHHHHHHHHccCC---CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHh-cccCChHHHHHHHH
Q 004425 310 MSEEAERMFDAISE---RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGC-SVCSNLELGLQLHG 385 (754)
Q Consensus 310 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~ 385 (754)
++++|+..++.+.+ ..+..|-.+..++...|+.+.|.+.|.+.++ +.|+.....+-+..+ ...|++++|...+-
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999888865 3567888888999999999999999988876 466666554444333 33688888888888
Q ss_pred HHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCC---hhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 004425 386 FAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKY---TAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEP 462 (754)
Q Consensus 386 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p 462 (754)
+.++... -=...|+.|...+-..|+...|..-|++...-| ...|-.|...|.. .+.+++|+..|.+.... .|
T Consensus 209 kAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke--~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 209 KAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE--ARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH--HhcchHHHHHHHHHHhc--CC
Confidence 8776431 223567778888888999999999998876433 3467777888888 99999999998887754 67
Q ss_pred CH-HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhHHHHHHH
Q 004425 463 DP-VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--R-DIVSWNAMLS 538 (754)
Q Consensus 463 ~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 538 (754)
+. ..+..+...|-.+|.++.|...+++.++.. +.-+..|+.|.+++...|++.+|.+.|.+... | ...+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 65 577777778889999999999999998864 23467899999999999999999999998864 3 4568899999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCC
Q 004425 539 AYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGR 616 (754)
Q Consensus 539 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 616 (754)
.|...|.+++|..+|....+ +.|.- ..++.|...|-.+|++++|+..|++. ..+.|+ ...|+.|...|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea---lrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEA---LRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHH---HhcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999998 88876 48999999999999999999999998 468898 4689999999999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 004425 617 LSEAMNLINSS-PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 617 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
.+.|.+.+.+. .+.|. ....+.|...++-.|++.+|+..|+.+++++|+.+.+|..+..++--..+|.+-.+.+++
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 99999999865 66674 778889999999999999999999999999999999999999988777777774443333
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=3.3e-20 Score=183.60 Aligned_cols=417 Identities=12% Similarity=0.106 Sum_probs=334.4
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC---CCchhHHHHHHHHHhcC
Q 004425 264 TNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE---RNLISWTALISGYVRSG 340 (754)
Q Consensus 264 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 340 (754)
..|..-..+.|++.+|++--...-+.. +.+....-.+-..+....+.+....--....+ .-..+|..+...+-..|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 344455567788888876544433221 22222222233445555555554332222222 23478999999999999
Q ss_pred ChhHHHHHHHHhHhcCccc-ChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchh-HHHHHHHHHHhCCCHHHHHHH
Q 004425 341 HGGKAINGFLEFLDLGICC-DSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVR-LGTALVDIYAKGGDLKSARML 418 (754)
Q Consensus 341 ~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~ 418 (754)
+.++|+.+++.+++. +| ....|..+..++...|+.+.|.+.|.+.++. .|+.. ..+-+.......|++++|...
T Consensus 131 ~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 131 QLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 999999999999985 45 4567889999999999999999999988874 35443 334455556668999999998
Q ss_pred HhcCCC--C-ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcccchHHHHHHHHHHHHhC
Q 004425 419 LDGFSC--K-YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP-VTFSRLLSLSASQACLVRGRSLHAYSIKTG 494 (754)
Q Consensus 419 ~~~~~~--~-~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 494 (754)
+.+..+ + -.+.|+.|...+-. .|+.-.|+..|++.... .|+- ..|..|...|...+.++.|...+.++....
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~--~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNA--QGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhh--cchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 877653 2 34689999999999 99999999999998854 6775 578888888888999999988888877643
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHH
Q 004425 495 YAADVIVGNALITMYAKCGSIDGAFQIFKGISD--RD-IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILG 570 (754)
Q Consensus 495 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 570 (754)
+....++..+...|-..|.++-|...|++..+ |+ ..+|+.|..++-..|+..+|...|.+.+. +.|+.. ..+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHH
Confidence 33567777788889999999999999999864 44 46899999999999999999999999998 778774 8899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMA 647 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g 647 (754)
|...+...|.+++|..+|....+ +.|. ...++.|...|-.+|++++|+..+++. .++|. ...++.+.+.+...|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh
Confidence 99999999999999999999854 5666 467889999999999999999999865 77886 778999999999999
Q ss_pred ChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 648 NSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 648 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+...|.+.+.+++.++|..++++..|+.+|-..|+..+|...++....
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999987654
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=9e-18 Score=185.77 Aligned_cols=421 Identities=12% Similarity=0.029 Sum_probs=273.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004425 227 CVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYG 306 (754)
Q Consensus 227 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 306 (754)
.+......+.+.|++++|+..|++... +.|+...|..+..++.+.|++++|.+.+...++.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 455566677788888888888888765 35666667777777777777777777777766543 224455666666666
Q ss_pred hcCChHHHHHHHHccCCCC---chhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHH
Q 004425 307 KHGMSEEAERMFDAISERN---LISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQL 383 (754)
Q Consensus 307 ~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 383 (754)
..|++++|+..|......+ ......++..+.. ..+........+. .
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~--~------------------------- 254 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET--K------------------------- 254 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc--C-------------------------
Confidence 6666666666554332111 0100111111000 1111111111111 0
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCC---hhhHHHHHHHHhh-hhcCCHHHHHHHHHHHHHcC
Q 004425 384 HGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKY---TAEFNAILSGFME-KIADDEEDVMVLFSQQRLAG 459 (754)
Q Consensus 384 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~-~~~~~~~~A~~~~~~m~~~g 459 (754)
+.+...+..+.. |...........-+....+.+ ...+..+...+.. ...+++++|++.|+...+.+
T Consensus 255 ---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 255 ---------PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG 324 (615)
T ss_pred ---------CCCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Confidence 111111111111 111111111111111110000 0111111111000 11578899999999988764
Q ss_pred -CCCCH-HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHH
Q 004425 460 -MEPDP-VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWN 534 (754)
Q Consensus 460 -~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 534 (754)
..|+. ..+..+...+...|++++|...++.+++.. +.....|..+...+...|++++|...|+...+ .+...|.
T Consensus 325 ~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 403 (615)
T TIGR00990 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYY 403 (615)
T ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 33443 466777777888999999999999998764 33456778888899999999999999998753 3567888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh
Q 004425 535 AMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR 613 (754)
Q Consensus 535 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 613 (754)
.+...+...|++++|+..|++.++ +.|+. ..+..+..++.+.|++++|+..|++... ..+.+...+..+..+|..
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLD 479 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHH
Confidence 999999999999999999999998 56764 5677788889999999999999999876 234456788899999999
Q ss_pred cCCHHHHHHHHHhC-CCCCC-------HHH-HHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCch
Q 004425 614 AGRLSEAMNLINSS-PFSES-------PLL-WRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLD 684 (754)
Q Consensus 614 ~g~~~~A~~~~~~~-~~~p~-------~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 684 (754)
.|++++|++.+++. ...|+ ... ++.....+...|++++|...++++++++|++...+..++.+|...|+++
T Consensus 480 ~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHH
Confidence 99999999999874 33332 111 1222223344699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 004425 685 EAAKVRTTMNDL 696 (754)
Q Consensus 685 ~a~~~~~~m~~~ 696 (754)
+|.+.+++..+.
T Consensus 560 eAi~~~e~A~~l 571 (615)
T TIGR00990 560 EALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=2e-16 Score=165.75 Aligned_cols=577 Identities=15% Similarity=0.077 Sum_probs=402.8
Q ss_pred hhHHHHHhccCCCCChhh-HHHHHHH--HhcCCChhHHHHHHHHHHhC--CCCCChhhHHHHHHHhccCCChHHHHHHHH
Q 004425 109 LDVAQKLFDGMLVRSAIT-WTSLIKG--YLDDGDYESVLGIACDMYRS--EEKFNEHTCSVILEACSLLEDRIFGEQIHA 183 (754)
Q Consensus 109 ~~~A~~~~~~~~~~~~~~-~~~li~~--~~~~~~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 183 (754)
++.|...|......+..- .-.+..+ ....|++..|+.+|...... ..+||+.. .+-.++.+.++.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 578888887774332221 1222333 33568999999999996543 33445432 22345568889999998888
Q ss_pred HHHHHCCCCcHHHHHHHHHHhHhc---CCHhHHHHHhccCC---CCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCC
Q 004425 184 FAIKSGFENNVFVGTSLISMYFHS---GCFREAENVFRGLA---YKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFE 257 (754)
Q Consensus 184 ~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 257 (754)
...+... -++.++-.|--.-... ..+..+..++...- ..|.+..|.|-..|.-.|++..++.+...+...-..
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 8876532 1222222222111122 23445555554332 347888999999999999999999999988765311
Q ss_pred --CCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC--C-CchhHHHH
Q 004425 258 --PNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE--R-NLISWTAL 332 (754)
Q Consensus 258 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 332 (754)
.-...|-.+-+++-..|++++|...|.+..+..-.-.+..+-.|..+|.+.|+++.+...|+.+.. | +..+...+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 123458888999999999999999998877654322244556788999999999999999999875 3 34555666
Q ss_pred HHHHHhcC----ChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHH----HhCCCcchhHHHHHHH
Q 004425 333 ISGYVRSG----HGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAI----KHGYLSDVRLGTALVD 404 (754)
Q Consensus 333 i~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~ 404 (754)
...|...+ ..+.|..++.+..+.- ..|...|..+-..+.. ++.......+..+. ..+-.+...+.|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 66666665 4456666666555432 2344555555554444 44444466665544 4666788899999999
Q ss_pred HHHhCCCHHHHHHHHhcCCCC-------Ch-----hhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 004425 405 IYAKGGDLKSARMLLDGFSCK-------YT-----AEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPV-TFSRLL 471 (754)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~-------~~-----~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll 471 (754)
.+...|.+++|...|++.... +. +|..--+..+... .++++.|.+.|..+... .|+-+ .|..++
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~-l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~ 537 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE-LHDTEVAEEMYKSILKE--HPGYIDAYLRLG 537 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh-hhhhhHHHHHHHHHHHH--CchhHHHHHHhh
Confidence 999999999999999866422 22 1111112222221 67899999999999987 67664 344444
Q ss_pred HHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CChhHHHHHHHHHH-----
Q 004425 472 SLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD-----RDIVSWNAMLSAYA----- 541 (754)
Q Consensus 472 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~----- 541 (754)
......++..+|...++.+...+ ..++..++.+.+.|.+...+..|..-|+.+.+ +|..+.-+|.+.|.
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 33345577888999988888754 45677777788899999999989886665532 45555555555443
Q ss_pred -------HcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh
Q 004425 542 -------LHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR 613 (754)
Q Consensus 542 -------~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 613 (754)
..+..++|+++|.+.++ ..| |...-+.+.-.++..|++.+|..+|.+..+. ..-...+|-.++.+|..
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVE 692 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHH
Confidence 23457889999999998 445 5567788888899999999999999999984 22345678899999999
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH-----------
Q 004425 614 AGRLSEAMNLINSS----PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYA----------- 678 (754)
Q Consensus 614 ~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~----------- 678 (754)
+|++-.|+++|+.. ..+.++.+...|..++...|.+.+|...+..+..+.|.|+.....++-+..
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k 772 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK 772 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc
Confidence 99999999999754 334578999999999999999999999999999999999988777776543
Q ss_pred --------hcCCchHHHHHHHHHhhCCC
Q 004425 679 --------GQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 679 --------~~g~~~~a~~~~~~m~~~~~ 698 (754)
..+..++|.++|+.|...+-
T Consensus 773 ~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33456778888888866444
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.9e-18 Score=181.58 Aligned_cols=290 Identities=11% Similarity=0.050 Sum_probs=200.6
Q ss_pred HhCCCHHHHHHHHhcCCC---CChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcccch
Q 004425 407 AKGGDLKSARMLLDGFSC---KYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPD---PVTFSRLLSLSASQACL 480 (754)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~ 480 (754)
...|++++|...|+++.. .+..++..+...+.. .|++++|+.+++.+...+..++ ...+..+...+...|++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRR--RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH--cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344555555555554431 222344555555555 6666666666666655322111 13455566666666777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--C------hhHHHHHHHHHHHcCChHHHHHH
Q 004425 481 VRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR--D------IVSWNAMLSAYALHGLGKGALLL 552 (754)
Q Consensus 481 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~ 552 (754)
+.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.++.+.+. + ...|..+...+.+.|++++|+..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777666542 345566677777777777777777777766431 1 12355677778888999999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 004425 553 FEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFS 630 (754)
Q Consensus 553 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 630 (754)
|+++.+. .|+. ..+..+...+.+.|++++|.++|+++.+. +-......+..++.+|.+.|++++|.+.++++ ...
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9988873 4543 46777778888899999999999988762 21122456778888999999999999988876 445
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh---cCCchHHHHHHHHHhhCCCccCCc
Q 004425 631 ESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG---QGMLDEAAKVRTTMNDLRLSKEAG 703 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 703 (754)
|+...+..++..+...|+.++|...++++++..|++.. +..+...+.. .|+.+++..++++|.+++++.+|.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 77667788889999999999999999999999999764 4444444443 569999999999999989988887
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.3e-15 Score=159.64 Aligned_cols=639 Identities=13% Similarity=0.054 Sum_probs=430.5
Q ss_pred CchhHHHHHhhhccccccccCCCCCcHHHHHHHhccCCCcchhHHHHHHHHHhCC----CCChh---hhHHHHHHHHcc-
Q 004425 35 NPKSQVAYLCSISSVSCSERTLLFNDWPQLVKISIGSGDLKLGQAVHAFLLKSGS----QNDTF---EANNLINLYAKF- 106 (754)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~---~~~~li~~~~~~- 106 (754)
.+...+.++...+ -...+|..+-..|...|..+++..+++.-.-..- .+... .++.|-.-|+..
T Consensus 26 D~~ev~~IL~~e~--------a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a 97 (1018)
T KOG2002|consen 26 DATEVLSILKAEQ--------APLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLA 97 (1018)
T ss_pred ChHHHHHHHHHhc--------CchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHH
Confidence 4555555555333 1335688888899999999998888776551110 11111 122222222111
Q ss_pred ----------CChhHHHHHhccCCCC-----ChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhc-
Q 004425 107 ----------NRLDVAQKLFDGMLVR-----SAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACS- 170 (754)
Q Consensus 107 ----------~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~- 170 (754)
..+..|..+|+....- ....+...........+.+.|...|....+.. ++|. ...+.++|.
T Consensus 98 ~kek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Ni--l~LlGkA~i~ 174 (1018)
T KOG2002|consen 98 MKEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNI--LALLGKARIA 174 (1018)
T ss_pred HHHHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-Ccch--HHHHHHHHHH
Confidence 1234445555543221 21222222112222223588999998887653 2232 334445554
Q ss_pred -cCCChHHHHHHHHHHHHH--CCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHH---HHc---CCh
Q 004425 171 -LLEDRIFGEQIHAFAIKS--GFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEY---NKA---GES 241 (754)
Q Consensus 171 -~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---~~~---g~~ 241 (754)
..+++..|..+|...... ...||+.+-.. .++.++|+.+.|...|.+..+-|...-++++.-. ... ..+
T Consensus 175 ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~ 252 (1018)
T KOG2002|consen 175 YNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSY 252 (1018)
T ss_pred hccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHH
Confidence 668999999999996664 34666654332 5677899999999999988876665444444321 222 234
Q ss_pred hHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCChHHHHHHHH
Q 004425 242 EMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVR--EISVGNAIVTMYGKHGMSEEAERMFD 319 (754)
Q Consensus 242 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 319 (754)
..++.++...-... .-|++..+.|.+.+.-.|++..+..+...+....... -...|--+.++|-..|++++|...|.
T Consensus 253 ~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 55565555544332 2366788889999999999999999999988765322 22346678899999999999999998
Q ss_pred ccCC--CC--chhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccC-hhhHHHHHHHhcccC----ChHHHHHHHHHHHHh
Q 004425 320 AISE--RN--LISWTALISGYVRSGHGGKAINGFLEFLDLGICCD-SSCLATVIDGCSVCS----NLELGLQLHGFAIKH 390 (754)
Q Consensus 320 ~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~ 390 (754)
+... +| +..+--+...|.+.|+.+.+...|+..... .|| ..|...+-..|...+ ..+.|..++....+.
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 8765 33 344556788999999999999999999875 444 445555555555553 456666666666664
Q ss_pred CCCcchhHHHHHHHHHHhCCCHHHHHHHHhcC--------CCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHc---C
Q 004425 391 GYLSDVRLGTALVDIYAKGGDLKSARMLLDGF--------SCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLA---G 459 (754)
Q Consensus 391 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~---g 459 (754)
- +.|...|-.+..+|.....+ .+..+|... ........|.+...+.. .|++++|...|...... .
T Consensus 410 ~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~--~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 410 T-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFR--LGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred c-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH--hcChHHHHHHHHHHhhhhhhh
Confidence 4 55667777777776654333 224444322 24556678888888888 99999999999887754 1
Q ss_pred CCCCH------HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCh
Q 004425 460 MEPDP------VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDI 530 (754)
Q Consensus 460 ~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~ 530 (754)
..+|. .+-..+.......++.+.|.+.+..+.+.. +.-+..|--+.-+--..+...+|...+....+ .++
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np 564 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNP 564 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc
Confidence 23333 233345556677889999999999998864 22222333333233334677888888887753 667
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHHhCC
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREG-FAPDDISILGVLQACIY------------SGLSEGGICLFNEIEQIYGL 597 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~ 597 (754)
..|+-+...|.+...+..|.+-|+...+.- ..+|..+...|.+.|.. .+..++|+++|.++.. ..
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~d 642 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--ND 642 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cC
Confidence 788888889999999999998777776432 23677777777776543 2457788888888866 44
Q ss_pred CCCccHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcc--CCCCcchHHHH
Q 004425 598 RPILEHFACMVDLLGRAGRLSEAMNLINSSP--FSESPLLWRTLVSVSKLMANSKFSILASKRLLDL--EPKDAGSFILV 673 (754)
Q Consensus 598 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l 673 (754)
+.+...-+-+.-+++..|++.+|.++|.++. ......+|-.+..+|...|++..|+++|+..+.. ..++......|
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 5567777889999999999999999998772 2235678999999999999999999999999875 34477899999
Q ss_pred HHHHHhcCCchHHHHHHHHHhhC
Q 004425 674 SNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 674 ~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+.++.+.|+|.+|.+........
T Consensus 723 ara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999998876553
No 19
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=4.8e-16 Score=147.86 Aligned_cols=304 Identities=13% Similarity=0.095 Sum_probs=236.1
Q ss_pred cHHHHHHHhccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHc--cCChh-HHHHHhccC-----------------
Q 004425 60 DWPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAK--FNRLD-VAQKLFDGM----------------- 119 (754)
Q Consensus 60 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~~~~~-~A~~~~~~~----------------- 119 (754)
+=+.+++. ..+|.+..+--+++.|.+.|++.+..+--.|+..-+- ...+- .-.+.|-.|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 44455553 4568899999999999999988887766666554332 11111 111222222
Q ss_pred ------CCCChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCc
Q 004425 120 ------LVRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENN 193 (754)
Q Consensus 120 ------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 193 (754)
...+..+|.+||.++|+--..+.|.+++.+-.....+.+..+||.+|.+-.- ...+++..+|+...+.||
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCc
Confidence 2335678999999999999999999999999998899999999999987543 334889999999999999
Q ss_pred HHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcc
Q 004425 194 VFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYEN 273 (754)
Q Consensus 194 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 273 (754)
..|+|+++++..+.|+++.|.+ .|++++.+|++-|+.|...+|..+|..+++.
T Consensus 273 l~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRE 325 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence 9999999999999999988865 4678899999999999999999999999998
Q ss_pred CCchH-HHHHHHHHHHh----cCC----CChhHHHHHHHHHHhcCChHHHHHHHHccCCC-----------CchhHHHHH
Q 004425 274 LGVEE-GKQLHGLAVKF----GVV----REISVGNAIVTMYGKHGMSEEAERMFDAISER-----------NLISWTALI 333 (754)
Q Consensus 274 ~~~~~-a~~~~~~~~~~----g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li 333 (754)
++..+ +..++.++... .+. .|...|..-++.|.+..+.+.|.++-.-.... ...-|..+.
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~ 405 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFF 405 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHH
Confidence 87744 45555555432 222 25667778888888889988888877655431 123466677
Q ss_pred HHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcc
Q 004425 334 SGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSD 395 (754)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 395 (754)
...|+....+.-+..|+.|.-+-+-|+..+...++.+....+.++...++|..++..|....
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 88888899999999999999888899999999999999999999999999999988775433
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=2.3e-16 Score=177.62 Aligned_cols=397 Identities=11% Similarity=-0.040 Sum_probs=240.5
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC---CCchhHHHHHHHHHhcC
Q 004425 264 TNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE---RNLISWTALISGYVRSG 340 (754)
Q Consensus 264 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 340 (754)
.-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|.++|++..+ .+...+..+...+...|
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 334445555666777776666665421 33444566666666667777777766666432 23445556666666666
Q ss_pred ChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHh
Q 004425 341 HGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLD 420 (754)
Q Consensus 341 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 420 (754)
++++|+..+++..+. .|+...+..+...+...|+.+.|...++++.+.. +.+...+..+...+...|..+.|...++
T Consensus 98 ~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 667776666666654 2322224455555566666666666666666643 2233333445555555555555555555
Q ss_pred cCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----hcccch---HHHHHHHHHHHH
Q 004425 421 GFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLS-----ASQACL---VRGRSLHAYSIK 492 (754)
Q Consensus 421 ~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~ 492 (754)
.... ++.....+ .. .....++... ...+++ +.|.+.++.+.+
T Consensus 175 ~~~~-~p~~~~~l---------------------------~~--~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~ 224 (765)
T PRK10049 175 DANL-TPAEKRDL---------------------------EA--DAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA 224 (765)
T ss_pred hCCC-CHHHHHHH---------------------------HH--HHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh
Confidence 4442 11100000 00 0000111111 111222 555666666654
Q ss_pred h-CCCCchh-HH----HHHHHHHHhcCCHHHHHHHHhccCCCC---hh-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 004425 493 T-GYAADVI-VG----NALITMYAKCGSIDGAFQIFKGISDRD---IV-SWNAMLSAYALHGLGKGALLLFEEMKREGFA 562 (754)
Q Consensus 493 ~-~~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 562 (754)
. .-.|+.. .+ ...+.++...|++++|...|+.+.+.+ +. .-..+..+|...|++++|+..|+++.+..
T Consensus 225 ~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~-- 302 (765)
T PRK10049 225 LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP-- 302 (765)
T ss_pred hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--
Confidence 3 1122211 11 111223456688888888888876532 11 11224667888888888888888877632
Q ss_pred CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC----------CCCC---ccHHHHHHHHHhhcCCHHHHHHHH
Q 004425 563 PD-----DISILGVLQACIYSGLSEGGICLFNEIEQIYG----------LRPI---LEHFACMVDLLGRAGRLSEAMNLI 624 (754)
Q Consensus 563 p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~ 624 (754)
|. ......+..++...|++++|.++++.+..... -.|+ ...+..++..+...|++++|++.+
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 32 23455566677888888888888888866210 0122 123456778888899999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 625 NSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 625 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+++ ...| ++..+..+...+...|+.++|+..++++++++|++...+..++.++...|+|++|+.+++.+.+.
T Consensus 383 ~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 383 RELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 876 3334 68888899999999999999999999999999999999999999999999999999999888654
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.5e-16 Score=175.16 Aligned_cols=351 Identities=12% Similarity=-0.008 Sum_probs=261.6
Q ss_pred HhcCChHHHHHHHHccCC------CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHH
Q 004425 306 GKHGMSEEAERMFDAISE------RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLEL 379 (754)
Q Consensus 306 ~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 379 (754)
.+..+++.-.-.|..-++ .+..-.-.++..+.+.|++++|..+++..+.....+. .....+..++...|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHH
Confidence 344555555555555443 1223344566778888999999998888887643332 334444455667889999
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHH
Q 004425 380 GLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQR 456 (754)
Q Consensus 380 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~ 456 (754)
|...++.+.+.. +.+...+..+...+...|++++|...+++.. +.+...|..+...+.. .|++++|...++.+.
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~--~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVL--MDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--CCChHHHHHHHHHHH
Confidence 999998888764 3445667778888889999999999888775 4455678888888888 999999999998887
Q ss_pred HcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHH
Q 004425 457 LAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSW 533 (754)
Q Consensus 457 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 533 (754)
.. .|+.......+..+...|++++|...++.+.+..-.++......+...+.+.|++++|...|+...+ .+...+
T Consensus 172 ~~--~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~ 249 (656)
T PRK15174 172 QE--VPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALR 249 (656)
T ss_pred Hh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 65 3433322222334778899999999998887764334444555567788899999999999998754 345678
Q ss_pred HHHHHHHHHcCChHH----HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHH
Q 004425 534 NAMLSAYALHGLGKG----ALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACM 607 (754)
Q Consensus 534 ~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 607 (754)
..+...|...|++++ |+..|++..+ +.|+. ..+..+...+...|++++|...+++..+ ..|+ ...+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~L 324 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 888999999999886 8999999998 56765 4788888999999999999999999876 3344 4567788
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 608 VDLLGRAGRLSEAMNLINSS-PFSESPLL-WRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
..+|.+.|++++|++.++++ ...|+... +..+..++...|+.++|...++++++.+|++.
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999999999876 34565433 34456778889999999999999999999854
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=1.6e-17 Score=174.63 Aligned_cols=297 Identities=14% Similarity=0.085 Sum_probs=143.1
Q ss_pred HHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCC
Q 004425 234 EYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVRE---ISVGNAIVTMYGKHGM 310 (754)
Q Consensus 234 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~ 310 (754)
.+...|++++|+..|.++.+.+. .+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34566777777777777766531 1333556666666666666666666666655332111 1334455555555555
Q ss_pred hHHHHHHHHccCC---CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHH
Q 004425 311 SEEAERMFDAISE---RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFA 387 (754)
Q Consensus 311 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 387 (754)
+++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 5555555555543 2334455555555555555555555555444321111000
Q ss_pred HHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH
Q 004425 388 IKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP 464 (754)
Q Consensus 388 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 464 (754)
....+..+...+.+.|++++|...|+++. +.+...+..+...+.. .|++++|.++|+++...+ |+
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~--p~- 246 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA--QGDYAAAIEALERVEEQD--PE- 246 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHC--hh-
Confidence 00112233333444444444444443332 1112233333344444 445555555554444331 21
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhHHHHHHHHHHH
Q 004425 465 VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--RDIVSWNAMLSAYAL 542 (754)
Q Consensus 465 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 542 (754)
....+++.++.+|.+.|++++|...++.+.+ |+...+..++..+.+
T Consensus 247 --------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~ 294 (389)
T PRK11788 247 --------------------------------YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEE 294 (389)
T ss_pred --------------------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 1123344455555555555555555555432 344444555555556
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHhCCCCCcc
Q 004425 543 HGLGKGALLLFEEMKREGFAPDDISILGVLQACIY---SGLSEGGICLFNEIEQIYGLRPILE 602 (754)
Q Consensus 543 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~p~~~ 602 (754)
.|++++|+.+++++.+ ..|+..++..++..+.. .|+.+++...++++.+ .++.|+..
T Consensus 295 ~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~-~~~~~~p~ 354 (389)
T PRK11788 295 QEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG-EQLKRKPR 354 (389)
T ss_pred hCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH-HHHhCCCC
Confidence 6666666666665555 34555555555554442 3355566666666555 24444444
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=1.9e-15 Score=170.26 Aligned_cols=405 Identities=12% Similarity=-0.002 Sum_probs=294.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004425 227 CVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYG 306 (754)
Q Consensus 227 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 306 (754)
...-.+......|+.++|++++.+..... ..+...+..+...+...|++++|.++++..++.. +.+......+...+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~ 94 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455677888999999999999987622 2344468888899999999999999999988763 445667778889999
Q ss_pred hcCChHHHHHHHHccCC--C-CchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccCh-hhHHHHHHHhcccCChHHHHH
Q 004425 307 KHGMSEEAERMFDAISE--R-NLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDS-SCLATVIDGCSVCSNLELGLQ 382 (754)
Q Consensus 307 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~ 382 (754)
..|+.++|...+++..+ | +.. |..+...+...|+.++|+..++++.+. .|+. ..+..+...+...+..+.|..
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 99999999999999865 3 445 888889999999999999999999985 4544 344556667778888999988
Q ss_pred HHHHHHHhCCCcchh------HHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCH---HHHHHHHH
Q 004425 383 LHGFAIKHGYLSDVR------LGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDE---EDVMVLFS 453 (754)
Q Consensus 383 ~~~~~~~~g~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---~~A~~~~~ 453 (754)
.++.+.. .|+.. ....++..+... .... .+++ ++|++.++
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~--------------------------~~~~--~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMP--------------------------TRSE--KERYAIADRALAQYD 220 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhccc--------------------------ccCh--hHHHHHHHHHHHHHH
Confidence 8876553 23210 001111111000 0001 2233 67788888
Q ss_pred HHHHc-CCCCCHH-HHH----HHHHHHhcccchHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 004425 454 QQRLA-GMEPDPV-TFS----RLLSLSASQACLVRGRSLHAYSIKTGYA-ADVIVGNALITMYAKCGSIDGAFQIFKGIS 526 (754)
Q Consensus 454 ~m~~~-g~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 526 (754)
.+.+. ...|+.. .+. ..+.++...|+.++|...++.+.+.+-+ |+- ....+...|...|++++|...|+++.
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 87753 2233321 111 1133455668889999999998877532 221 22225678899999999999999875
Q ss_pred CCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHHHhcCCHHHHH
Q 004425 527 DRD-------IVSWNAMLSAYALHGLGKGALLLFEEMKREGF-----------APDD---ISILGVLQACIYSGLSEGGI 585 (754)
Q Consensus 527 ~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~---~t~~~ll~a~~~~g~~~~a~ 585 (754)
+.+ ...+..+..++...|++++|+.+++++.+... .|+. ..+..+...+...|++++|+
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 422 23455667788899999999999999987421 1332 24456677888999999999
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Q 004425 586 CLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLE 663 (754)
Q Consensus 586 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 663 (754)
+.++++.. ..+.+...+..++.++...|++++|++.+++. ...| +...+..++......|++++|+.+++++++..
T Consensus 380 ~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 380 MRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999977 34455678889999999999999999999876 4556 47788888888889999999999999999999
Q ss_pred CCCcchH
Q 004425 664 PKDAGSF 670 (754)
Q Consensus 664 p~~~~~~ 670 (754)
|+++.+.
T Consensus 458 Pd~~~~~ 464 (765)
T PRK10049 458 PQDPGVQ 464 (765)
T ss_pred CCCHHHH
Confidence 9988543
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=9.5e-16 Score=169.72 Aligned_cols=426 Identities=12% Similarity=-0.008 Sum_probs=272.5
Q ss_pred HHHHHHHHhHhcCCHhHHHHHhccCC--CCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHhc
Q 004425 196 VGTSLISMYFHSGCFREAENVFRGLA--YKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPN-DYTFTNVISVCYE 272 (754)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 272 (754)
.+..+-..|.+.|++++|++.|++.. .|+...|..+..+|.+.|++++|++.+++..+. .|+ ...+..+-.++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 45566778899999999999998865 356778888999999999999999999998875 343 4578888899999
Q ss_pred cCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHh
Q 004425 273 NLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEF 352 (754)
Q Consensus 273 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 352 (754)
.|++++|..-+......+-..+... ..++.-+........+...++.-+ .+..++..+.. |...........-+.+-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 9999999988876655432222222 222222222222334444443322 23334443322 22222222222111111
Q ss_pred HhcCcccCh-hhHHHHHHH---hcccCChHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCCh
Q 004425 353 LDLGICCDS-SCLATVIDG---CSVCSNLELGLQLHGFAIKHG-YLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYT 427 (754)
Q Consensus 353 ~~~g~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 427 (754)
.+ ..++. ..+..+... ....+++++|.+.|+..++.+ ..| ...
T Consensus 284 ~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~------------------------------~~a 331 (615)
T TIGR00990 284 NE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGE------------------------------KEA 331 (615)
T ss_pred cc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCCh------------------------------hhH
Confidence 11 11110 000000000 012234444544444444432 111 122
Q ss_pred hhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 004425 428 AEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP-VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALI 506 (754)
Q Consensus 428 ~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 506 (754)
..|+.+...+.. .|++++|+..|++..+. .|+. ..|..+...+...|++++|...++.+.+.. +.+..++..+.
T Consensus 332 ~a~~~lg~~~~~--~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg 406 (615)
T TIGR00990 332 IALNLRGTFKCL--KGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRA 406 (615)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 234444455555 67777777777776654 4543 466666667777777777777777777653 34567778888
Q ss_pred HHHHhcCCHHHHHHHHhccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH
Q 004425 507 TMYAKCGSIDGAFQIFKGISD--R-DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSE 582 (754)
Q Consensus 507 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 582 (754)
..|...|++++|...|++..+ | +...|..+...+.+.|++++|+..|++.++ ..|+ ...+..+..++...|+++
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHH
Confidence 888888888888888887754 3 456677788888899999999999999887 4565 457888888889999999
Q ss_pred HHHHHHHHHHHHhCCCCCc-c-------HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 004425 583 GGICLFNEIEQIYGLRPIL-E-------HFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFS 652 (754)
Q Consensus 583 ~a~~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 652 (754)
+|+..|++... +.|+. . .++.....+...|++++|.+++++. ...| +...+..+...+...|++++|
T Consensus 485 ~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 485 EAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 99999998865 23321 1 1112222334468999999999864 4455 456788899999999999999
Q ss_pred HHHHHHhhccCCCCcc
Q 004425 653 ILASKRLLDLEPKDAG 668 (754)
Q Consensus 653 ~~~~~~~~~~~p~~~~ 668 (754)
...+++++++.+....
T Consensus 562 i~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 562 LKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHhccHHH
Confidence 9999999999876443
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=4.5e-16 Score=171.44 Aligned_cols=351 Identities=12% Similarity=-0.012 Sum_probs=276.3
Q ss_pred HHhcCChhHHHHHHHHhHhcC--cccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHH
Q 004425 336 YVRSGHGGKAINGFLEFLDLG--ICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLK 413 (754)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 413 (754)
+.+..+|+.-.-.|..-.++- -.-+......++..+.+.|+.+.|..+++..+...... ......++......|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHH
Confidence 345556655555554432221 11233445667788899999999999999999876444 344444556667799999
Q ss_pred HHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchHHHHHHHHH
Q 004425 414 SARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPD-PVTFSRLLSLSASQACLVRGRSLHAY 489 (754)
Q Consensus 414 ~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 489 (754)
+|...|+++. +.+...|..+...+.. .|++++|+..|++..+. .|+ ...+..+...+...|+.++|...+..
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~--~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLK--SKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 9999999886 4455678888888999 99999999999999875 455 46778888899999999999999998
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 004425 490 SIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR----DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD 565 (754)
Q Consensus 490 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 565 (754)
+....- .+...+..+ ..+...|++++|...++.+.+. +...+..+..++...|++++|+..++++.+. .|+.
T Consensus 170 ~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~ 245 (656)
T PRK15174 170 QAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDG 245 (656)
T ss_pred HHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 877642 233333333 3478899999999999987543 2334455677889999999999999999984 4654
Q ss_pred -HHHHHHHHHHHhcCCHHH----HHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 004425 566 -ISILGVLQACIYSGLSEG----GICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWR 637 (754)
Q Consensus 566 -~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 637 (754)
..+..+...+...|++++ |...|+++.+ +.|+ ...+..++.+|.+.|++++|+..+++. ...| ++..+.
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~ 322 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA 322 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 577788889999999986 8999999866 3444 568889999999999999999999876 3445 577888
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 638 TLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 638 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
.+..++...|++++|...++++++.+|+++..+..++.++...|++++|...+++..+...
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 8999999999999999999999999999887777789999999999999999998866543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=1.6e-14 Score=159.19 Aligned_cols=432 Identities=9% Similarity=0.003 Sum_probs=222.5
Q ss_pred hHhcCCHhHHHHHhccCCCCCcc---hHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHH-H--HHHHhccCCch
Q 004425 204 YFHSGCFREAENVFRGLAYKDVR---CVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTN-V--ISVCYENLGVE 277 (754)
Q Consensus 204 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-l--l~~~~~~~~~~ 277 (754)
..+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+.. + ...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 45667777777777666543222 12266666666677777777776665 232222222 2 33455556667
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCC--CchhHHHHHHHHHhcCChhHHHHHHHHhHhc
Q 004425 278 EGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISER--NLISWTALISGYVRSGHGGKAINGFLEFLDL 355 (754)
Q Consensus 278 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (754)
+|.++++.+.+.. +.+..++..++..|...++.++|++.++++... +...+-.++..+...++..+|++.++++.+.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 7777776666653 223445555566666666666666666666542 2222222222222233443466666666554
Q ss_pred CcccC-hhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHH
Q 004425 356 GICCD-SSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAIL 434 (754)
Q Consensus 356 g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 434 (754)
.|+ ...+..+..+..+.|-...|.++..+ .|+..+-...... +.+.|.+..+.-..+
T Consensus 199 --~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~--------- 256 (822)
T PRK14574 199 --APTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLP--------- 256 (822)
T ss_pred --CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhcccc---------
Confidence 232 33334444444444444444433332 1111110000000 000011110000000
Q ss_pred HHHhhhhcC---CHHHHHHHHHHHHHc-CCCCCH-H----HHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHH
Q 004425 435 SGFMEKIAD---DEEDVMVLFSQQRLA-GMEPDP-V----TFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNAL 505 (754)
Q Consensus 435 ~~~~~~~~~---~~~~A~~~~~~m~~~-g~~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 505 (754)
...... -.+.|+.-++.+... +-.|.. . ...-.+-++...++..++...++.+...+.+.-..+-.++
T Consensus 257 ---~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 257 ---TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ---cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 000011 234455555555441 112322 1 1223344566677777777777777776665555566677
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-------------CC
Q 004425 506 ITMYAKCGSIDGAFQIFKGISDR---------DIVSWNAMLSAYALHGLGKGALLLFEEMKREGF-------------AP 563 (754)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p 563 (754)
.++|...+++++|..+|+.+... +......|.-+|...+++++|..+++++.+.-. .|
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 77777777777777777766321 122235566677777777777777777765211 12
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 004425 564 DDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLV 640 (754)
Q Consensus 564 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 640 (754)
|-. .+..+...+...|++.+|++.++.+.. .-+-+......+.+++...|+..+|++.++.. ...| +..+....+
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 222 233344556666677777777766654 33445556666666666666666666666543 2344 344555556
Q ss_pred HHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 641 SVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 641 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
.+....+++++|..+.+++.+..|+++
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 666666666666666666666666665
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.9e-14 Score=137.14 Aligned_cols=329 Identities=14% Similarity=0.063 Sum_probs=235.4
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhc--cCCChHH-HHHHHHHHHHHCCCCcHHHHHH
Q 004425 123 SAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACS--LLEDRIF-GEQIHAFAIKSGFENNVFVGTS 199 (754)
Q Consensus 123 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~-a~~~~~~m~~~g~~~~~~~~~~ 199 (754)
.+++-|.|+. ...+|...++.-+|+.|...|+..++..-..|++..+ ...++.- -++.|-.|.+.|-. +..+|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 4556666665 4567889999999999999999888877777766544 2223222 23344445444422 22222
Q ss_pred HHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHH
Q 004425 200 LISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEG 279 (754)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 279 (754)
+.|++.+ ++-+...+...+|..||.|+|+--..+.|.++|++-.....+.+..+||.+|.+-.- ...
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVG 257 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hcc
Confidence 3454443 444444556678999999999999999999999999988889999999999987543 334
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCccc
Q 004425 280 KQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICC 359 (754)
Q Consensus 280 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 359 (754)
++++.+|......||..|+|+++....+.|+++.|.+. |++++.+|++.|+.|
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVeP 310 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEP 310 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCc
Confidence 88999999999999999999999999999998877643 566778888888888
Q ss_pred ChhhHHHHHHHhcccCChHH-HHHHHHHHHH----hCCCc----chhHHHHHHHHHHhCCCHHHHHHHHhcCCCC-----
Q 004425 360 DSSCLATVIDGCSVCSNLEL-GLQLHGFAIK----HGYLS----DVRLGTALVDIYAKGGDLKSARMLLDGFSCK----- 425 (754)
Q Consensus 360 ~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 425 (754)
...+|..+|..+++.++..+ +..++.++.. ..++| |...+..-+..+.+..+.+-|.++-.-+...
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 88888888888877776643 3333333332 22222 4455666677777777777777765544311
Q ss_pred ------ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCC
Q 004425 426 ------YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAA 497 (754)
Q Consensus 426 ------~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 497 (754)
...-|..+....|+ ....+..+..|+.|.-.-+-|+..+...++++....+.++-..+++..++..|...
T Consensus 391 ig~~~~~~fYyr~~~~licq--~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~ 466 (625)
T KOG4422|consen 391 IGPDQHRNFYYRKFFDLICQ--MESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTF 466 (625)
T ss_pred cChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhh
Confidence 11235556667777 77788888888888877778888888888888888888888888888888776433
No 28
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.75 E-value=1.3e-14 Score=150.31 Aligned_cols=547 Identities=13% Similarity=0.014 Sum_probs=301.9
Q ss_pred hhccccccccCCCCCcHHHHHHHhccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCCCCh
Q 004425 45 SISSVSCSERTLLFNDWPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSA 124 (754)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 124 (754)
+...+...|+.|+..||..++-.|+..|+++.|. +|..|.-...+.+-.+++.++..-...++.+.+. .|..
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 3344566778889999999999999999999888 8888887777777788888888888888876665 6778
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHH-H-------HhCCCCCChhhHHHHHHHhccCC-C------hHHHHHHHHHHHHHC
Q 004425 125 ITWTSLIKGYLDDGDYESVLGIACD-M-------YRSEEKFNEHTCSVILEACSLLE-D------RIFGEQIHAFAIKSG 189 (754)
Q Consensus 125 ~~~~~li~~~~~~~~~~~a~~~~~~-m-------~~~g~~p~~~t~~~ll~~~~~~~-~------~~~a~~~~~~m~~~g 189 (754)
.+|+.|..+|.++|+... ++..++ | ...|+-.-+.-|-..+.+|...- + ..--+.+++...+.+
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998765 222222 2 12333222222222222222110 0 001122233333333
Q ss_pred C-CCcHHHHHH---HHHHhH-hcCCHhHHHHHhccCCC-CCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchH
Q 004425 190 F-ENNVFVGTS---LISMYF-HSGCFREAENVFRGLAY-KDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTF 263 (754)
Q Consensus 190 ~-~~~~~~~~~---li~~~~-~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 263 (754)
. .|...-++. .++-.. ....+++-........+ ++..+|.+++..-..+|+.+.|..++.+|++.|+..+..-|
T Consensus 163 ~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred hhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 1 111110000 111111 12234444444444444 78889999999999999999999999999999999999888
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChh
Q 004425 264 TNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGG 343 (754)
Q Consensus 264 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 343 (754)
-.|+-+ .++...++.++.-|...|+.|+..|+..-+-.+.++|....+.+..+.-.--....+..+.++...+.+.+
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~ 319 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLR 319 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHH
Confidence 888866 78888899999999999999999999887777777555322222111100011122222332211111111
Q ss_pred -----HHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCC---CcchhHHHHHHHHHHhCCCHHHH
Q 004425 344 -----KAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGY---LSDVRLGTALVDIYAKGGDLKSA 415 (754)
Q Consensus 344 -----~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A 415 (754)
-....+.+..-.|+.-....|.. +.-....|.-+...++...+..--. ..++..+..++.-|.+
T Consensus 320 ~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr------- 391 (1088)
T KOG4318|consen 320 QNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR------- 391 (1088)
T ss_pred HHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH-------
Confidence 11122222222233222222222 2222234555555555555543111 1122333333333332
Q ss_pred HHHHhcCCCCChhhHHHHHHHHhhh-hcCCHHHHHHHHHHH------------HH----cCCC-------CCHHHHHHHH
Q 004425 416 RMLLDGFSCKYTAEFNAILSGFMEK-IADDEEDVMVLFSQQ------------RL----AGME-------PDPVTFSRLL 471 (754)
Q Consensus 416 ~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~~~A~~~~~~m------------~~----~g~~-------p~~~~~~~ll 471 (754)
+...+..........+.... ...+..+..++.... .. +-.. +-...-+.++
T Consensus 392 -----r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~ 466 (1088)
T KOG4318|consen 392 -----RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLH 466 (1088)
T ss_pred -----HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHH
Confidence 22211111000000000000 011111111111111 00 0001 1112334555
Q ss_pred HHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCh------hHHHHHHHHHHHcCC
Q 004425 472 SLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDI------VSWNAMLSAYALHGL 545 (754)
Q Consensus 472 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~ 545 (754)
..|++.-+..+++..-+.....-++ ..|..||+.+....+.++|..+.++...+|. .-+..+.+.+.+.+.
T Consensus 467 l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~ 543 (1088)
T KOG4318|consen 467 LTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI 543 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH
Confidence 5666665555555444433332221 5688888888888899999999888876654 356778888888888
Q ss_pred hHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHH
Q 004425 546 GKGALLLFEEMKREGF-APD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNL 623 (754)
Q Consensus 546 ~~~A~~~~~~m~~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 623 (754)
...+..+++++.+.-. .|+ ..++..++......|..+.-.+.++-+.. +|+.-+ .-++....+.++...|.+.
T Consensus 544 l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs-lgl~et----gPl~~vhLrkdd~s~a~ea 618 (1088)
T KOG4318|consen 544 LYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVS-LGLSET----GPLWMVHLRKDDQSAAQEA 618 (1088)
T ss_pred HHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHH-hhhhhc----ccceEEEeeccchhhhhhc
Confidence 8889888888886332 232 34677777777788888777777777766 565442 2333444455555555554
Q ss_pred H
Q 004425 624 I 624 (754)
Q Consensus 624 ~ 624 (754)
.
T Consensus 619 ~ 619 (1088)
T KOG4318|consen 619 P 619 (1088)
T ss_pred c
Confidence 4
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=4.3e-11 Score=120.66 Aligned_cols=459 Identities=13% Similarity=0.054 Sum_probs=303.8
Q ss_pred HHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHH----HHhcCCCChhHHHHHHHHHHhcCCh
Q 004425 236 NKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLA----VKFGVVREISVGNAIVTMYGKHGMS 311 (754)
Q Consensus 236 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~ 311 (754)
.+..-++.|..+++..++. ++-+...|.+....=-..|+.+...++++.- ...|+..+..-|-.=...+-+.|..
T Consensus 417 arLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 417 ARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 3333444444444444432 3334444444444334444444444444332 2234444444444444444444444
Q ss_pred HHHHHHHHccCC------CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHH
Q 004425 312 EEAERMFDAISE------RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHG 385 (754)
Q Consensus 312 ~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 385 (754)
--+..+...... .--.+|+.-...|.+.+.++-|..+|...++- ..-+...|......--..|..+....++.
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 444433333321 11234555555555555555555555554442 12223334333333344455555555555
Q ss_pred HHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 004425 386 FAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEP 462 (754)
Q Consensus 386 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p 462 (754)
+++..- +-....+-.....+-..|++..|+.++.+.- ..+...|-+-+.--.. +.+++.|..+|.+.... .|
T Consensus 575 kav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~e--n~e~eraR~llakar~~--sg 649 (913)
T KOG0495|consen 575 KAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFE--NDELERARDLLAKARSI--SG 649 (913)
T ss_pred HHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc--cccHHHHHHHHHHHhcc--CC
Confidence 555542 2233344445555556677777766666553 2344456666666666 78888888888877754 67
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-hhHHHHHHHH
Q 004425 463 DPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--RD-IVSWNAMLSA 539 (754)
Q Consensus 463 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~ 539 (754)
+...|.--+..---.++.++|++++++.++. ++.-...|-.+.+.+-..++++.|...|..-.+ |+ +..|-.|...
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 7777766666667788889999999888875 344566788888899999999999999987754 44 4578888887
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHH
Q 004425 540 YALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLS 618 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 618 (754)
--+.|+..+|..++++..-.+ | |...|...+..-.+.|..+.|..+..+..+ ..+.+...|.--|.+..+.++-.
T Consensus 729 eEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccch
Confidence 788899999999999988754 4 556888999999999999999999999887 56677778888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 619 EAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 619 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
.+.+.+++- +.|+.+..+....+....+++.|..-|++++..+|++..+|..+-..+.+.|.-++-.+++.+......
T Consensus 805 ks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 805 KSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 888888775 457788888888899999999999999999999999999999999999999999999999987755433
Q ss_pred ccCCceeEEEEC
Q 004425 699 SKEAGCSWIEID 710 (754)
Q Consensus 699 ~~~~~~s~~~~~ 710 (754)
..|..|+.+.
T Consensus 883 --~hG~~W~avS 892 (913)
T KOG0495|consen 883 --THGELWQAVS 892 (913)
T ss_pred --CCCcHHHHHh
Confidence 2566666544
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=1.5e-11 Score=129.02 Aligned_cols=613 Identities=14% Similarity=0.115 Sum_probs=401.8
Q ss_pred hccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhccC---CCCChhhHHHHHHHHhcCCChhHHH
Q 004425 68 SIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGM---LVRSAITWTSLIKGYLDDGDYESVL 144 (754)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~ 144 (754)
+++ |++..|..++.++++.. +.....|-.|-..|-..|+.+++...+--. ...|..-|-.+-.-..+.|++.+|.
T Consensus 150 far-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 444 99999999999999876 456678999999999999999998876444 3447788999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHH----HHHHHhHhcCCHhHHHHHhccC
Q 004425 145 GIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGT----SLISMYFHSGCFREAENVFRGL 220 (754)
Q Consensus 145 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~ 220 (754)
-+|.+..+.. +++...+---...|-+.|+...|..-+.++....-+.|..-.. ..++.|...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999998764 2343444444566778899999999999988875433333222 3456667777778888888776
Q ss_pred CC--C---CcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC----------------------cchHH----HHHHH
Q 004425 221 AY--K---DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPN----------------------DYTFT----NVISV 269 (754)
Q Consensus 221 ~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------------~~t~~----~ll~~ 269 (754)
.. . +...+|.++..|.+...++.|......+......+| ...|. .+.-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 54 2 445789999999999999999999888876222222 22221 22333
Q ss_pred HhccCCchHHHHHHHHHHHhc--CCCChhHHHHHHHHHHhcCChHHHHHHHHccCC----CCchhHHHHHHHHHhcCChh
Q 004425 270 CYENLGVEEGKQLHGLAVKFG--VVREISVGNAIVTMYGKHGMSEEAERMFDAISE----RNLISWTALISGYVRSGHGG 343 (754)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~ 343 (754)
+.+....+....+...+.+.. ...+...|.-+.++|...|++.+|.++|..+.. .+...|-.+..+|...|..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 445556666666666677666 444677888999999999999999999998875 46678999999999999999
Q ss_pred HHHHHHHHhHhcCcccChh-hHHHHHHHhcccCChHHHHHHHHHHH--------HhCCCcchhHHHHHHHHHHhCCCHHH
Q 004425 344 KAINGFLEFLDLGICCDSS-CLATVIDGCSVCSNLELGLQLHGFAI--------KHGYLSDVRLGTALVDIYAKGGDLKS 414 (754)
Q Consensus 344 ~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~ 414 (754)
+|++.|...+.. .|+.. .-..|-..+-+.|+.++|.+.++.+. ..+..|+..+.--..+.|.+.|+.++
T Consensus 467 ~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 467 EAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 999999998874 45443 33445555778899999999988843 34456667777777788888888777
Q ss_pred HHHHHhcCCCC--------------------------ChhhHHHHHHHHhhhhcCCHHHHH------HHHHHHHHcCCCC
Q 004425 415 ARMLLDGFSCK--------------------------YTAEFNAILSGFMEKIADDEEDVM------VLFSQQRLAGMEP 462 (754)
Q Consensus 415 A~~~~~~~~~~--------------------------~~~~~~~li~~~~~~~~~~~~~A~------~~~~~m~~~g~~p 462 (754)
=..+-..|..+ +......++.+-.+ .++..... ..+..-...|+.-
T Consensus 545 fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k--~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 545 FINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREK--ATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhc--cCchHHhhhcccchhhhhhhhhccCcH
Confidence 44433322210 01111112222222 11111100 1111111223332
Q ss_pred CH--HHHHHHHHHHhcccchHHHHHHHHHHHHhCC--CCch---hHHHHHHHHHHhcCCHHHHHHHHhccCCC-----Ch
Q 004425 463 DP--VTFSRLLSLSASQACLVRGRSLHAYSIKTGY--AADV---IVGNALITMYAKCGSIDGAFQIFKGISDR-----DI 530 (754)
Q Consensus 463 ~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~ 530 (754)
+. ..+.-++..+++.+++++|..+...+..... .++. ..-...+.+....+++..|...++.|... ++
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~ 702 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDV 702 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhh
Confidence 32 2345566677888888888888888776532 1222 22344556667778888888888777543 33
Q ss_pred ---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHH
Q 004425 531 ---VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVL--QACIYSGLSEGGICLFNEIEQIYGLRPILEHFA 605 (754)
Q Consensus 531 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 605 (754)
..||...+.+.+.++-.--.+++..... .+|+......++ .-....+.+..|+..+-+... ..|+....+
T Consensus 703 ~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~---~~pd~Pl~n 777 (895)
T KOG2076|consen 703 YQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR---QNPDSPLIN 777 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH---hCCCCcHHH
Confidence 3677666666666654444444444433 233332222222 233456778888887776644 456643333
Q ss_pred -HHHHHHh----------hcCCHHHHHHHHHhC---CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc---
Q 004425 606 -CMVDLLG----------RAGRLSEAMNLINSS---PF-SESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA--- 667 (754)
Q Consensus 606 -~l~~~~~----------~~g~~~~A~~~~~~~---~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~--- 667 (754)
||+-++. |.-..-.+..++.+. .. .....++-.++.+|...|=...|+..|++++++.|.+-
T Consensus 778 l~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~ 857 (895)
T KOG2076|consen 778 LCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDP 857 (895)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccc
Confidence 3332221 111234455555332 11 12466777899999999999999999999999875421
Q ss_pred ---------chHHHHHHHHHhcCCchHHHHHHHH
Q 004425 668 ---------GSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 668 ---------~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
.+-.+|.-+|-.+|+...|..+.++
T Consensus 858 ~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 858 KEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred cCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 2455677789999999999988764
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=1e-12 Score=145.17 Aligned_cols=432 Identities=12% Similarity=0.029 Sum_probs=246.2
Q ss_pred HHHccCChhHHHHHhccCCCCChh---hHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhh---HHHHHHHhccCCCh
Q 004425 102 LYAKFNRLDVAQKLFDGMLVRSAI---TWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHT---CSVILEACSLLEDR 175 (754)
Q Consensus 102 ~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~ 175 (754)
...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+... ...+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 355788888999988887543222 22377788888899999998888886 332222 22234466677888
Q ss_pred HHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHH--cCChhHHHHHHHHhHH
Q 004425 176 IFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNK--AGESEMAFHVFVHLLS 253 (754)
Q Consensus 176 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~ 253 (754)
+.|.++++.+.+.. +.+..++..++..|...++.++|++.++++...+......+..++.. .++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 88888888888775 33456666777888888888888888887775544322223334443 4555558888888877
Q ss_pred CCCCC-CcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHH
Q 004425 254 SDFEP-NDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTAL 332 (754)
Q Consensus 254 ~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 332 (754)
.. | +...+..++.++.+.|-...|.++..+ .|+.++-...... +.+.|.+..+....++.
T Consensus 198 ~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~------ 258 (822)
T PRK14574 198 LA--PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPTR------ 258 (822)
T ss_pred hC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhcccccc------
Confidence 63 4 344556666777777777766665544 2222211111110 01111111111100000
Q ss_pred HHHHHhcCC---hhHHHHHHHHhHhc-CcccChh-----hHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHH
Q 004425 333 ISGYVRSGH---GGKAINGFLEFLDL-GICCDSS-----CLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALV 403 (754)
Q Consensus 333 i~~~~~~g~---~~~A~~~~~~m~~~-g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 403 (754)
...++ .+.|+.-++.+... +-.|... ...-.+-++...++...+.+.++.+...|.+....+-.++.
T Consensus 259 ----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 259 ----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred ----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 00011 23344444444431 1112211 11223445666677777777777777766655556677777
Q ss_pred HHHHhCCCHHHHHHHHhcCCCC---------ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC-----------CCC
Q 004425 404 DIYAKGGDLKSARMLLDGFSCK---------YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGM-----------EPD 463 (754)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~ 463 (754)
++|...++.++|..+++++... +......|.-+|.. .+++++|..+++.+.+.-. .||
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld--~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE--SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh--cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 7777777777777777765321 11223456666677 7777777777777766310 122
Q ss_pred H--H-HHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhHHHHHH
Q 004425 464 P--V-TFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--R-DIVSWNAML 537 (754)
Q Consensus 464 ~--~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li 537 (754)
. . .+..+...+...|++.+|++.++.+.... +-|..+...+.+.+...|.+.+|++.++.... | +..+....+
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 1 1 22334445556666666666666665443 44666666666666666666666666655432 2 333444555
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 004425 538 SAYALHGLGKGALLLFEEMKREGFAPDDI 566 (754)
Q Consensus 538 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 566 (754)
.++...|++.+|..+.+.+.+ ..|+..
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~--~~Pe~~ 518 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVIS--RSPEDI 518 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--hCCCch
Confidence 556666666666666666665 445544
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.68 E-value=5.3e-13 Score=138.65 Aligned_cols=523 Identities=12% Similarity=-0.039 Sum_probs=296.0
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCC
Q 004425 145 GIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKD 224 (754)
Q Consensus 145 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 224 (754)
.++-.|...|+.|+..||..++.-||..|+++.|- +|..|.-...+.+..+++.++.+....++.+.+. ++.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 34556666777777777777777777777777777 7777776666667777777777777776666554 556
Q ss_pred cchHHHHHHHHHHcCChhH---HHHHHHHhH----HCCC-----------------CCCcchHHHHHHHHhccCCchHHH
Q 004425 225 VRCVNFMILEYNKAGESEM---AFHVFVHLL----SSDF-----------------EPNDYTFTNVISVCYENLGVEEGK 280 (754)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~---A~~~~~~m~----~~g~-----------------~p~~~t~~~ll~~~~~~~~~~~a~ 280 (754)
..+|+.+..+|.+.|+... ..+.+.... ..|+ -||..+ ++.-....|-++.+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqll 159 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLL 159 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHH
Confidence 6677777777777777544 222111111 1222 222221 111122223333333
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHh-cCChHHHHHHHHccCC-CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcc
Q 004425 281 QLHGLAVKFGVVREISVGNAIVTMYGK-HGMSEEAERMFDAISE-RNLISWTALISGYVRSGHGGKAINGFLEFLDLGIC 358 (754)
Q Consensus 281 ~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 358 (754)
+++..+...... .++.. +++-... ...+++-........+ ++..+|.+.+..-..+|+.+.|..++.+|.+.|..
T Consensus 160 kll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 333222111000 01111 1222222 2334455555555554 89999999999999999999999999999999999
Q ss_pred cChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHh
Q 004425 359 CDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFM 438 (754)
Q Consensus 359 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 438 (754)
.+.+.|..++-+ .++...+..+.+-|.+.|+.|+..|+...+..+...|....+....+.-..-....+..+..+..
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 999999999877 88899999999999999999999999988888777665333322211100011112222222211
Q ss_pred hhhcCCHH-----HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 004425 439 EKIADDEE-----DVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCG 513 (754)
Q Consensus 439 ~~~~~~~~-----~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 513 (754)
. +...+ -....+.+..-.|+......|..... ...+|.-+...++...+..--. ..-+.-+++|.
T Consensus 314 a--~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~----r~s~~~V~a~~--- 383 (1088)
T KOG4318|consen 314 A--NKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTL----RDSGQNVDAFG--- 383 (1088)
T ss_pred h--HHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCcc----ccCcchHHHHH---
Confidence 1 11111 12222333333344444444433332 2236666666666666643211 11111122221
Q ss_pred CHHHHHHHHhccCCCChhHHHHHHHHHHH---cC------------ChHHHHHHHHHHHH----cCCCC-------CHHH
Q 004425 514 SIDGAFQIFKGISDRDIVSWNAMLSAYAL---HG------------LGKGALLLFEEMKR----EGFAP-------DDIS 567 (754)
Q Consensus 514 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~g------------~~~~A~~~~~~m~~----~g~~p-------~~~t 567 (754)
+.+.+.|.+...+......-.-.+... .. +...++.-+..... .-..| -...
T Consensus 384 --~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi 461 (1088)
T KOG4318|consen 384 --ALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDI 461 (1088)
T ss_pred --HHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHH
Confidence 123344444433222111001111111 11 11111111111110 00111 0112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCC-----CCCHHHHHHHHHH
Q 004425 568 ILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPF-----SESPLLWRTLVSV 642 (754)
Q Consensus 568 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~p~~~~~~~l~~~ 642 (754)
-+.++..|++.-+..++...-+.... +-+. ..|..|++.+....+.++|..+.++... .-|...+..+.+.
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~-~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dL 537 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYED-LLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDL 537 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHH
Confidence 34455566666666666654444433 2232 5689999999999999999999988732 2355567788888
Q ss_pred HHhcCChHHHHHHHHHhhcc---CCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCcc
Q 004425 643 SKLMANSKFSILASKRLLDL---EPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSK 700 (754)
Q Consensus 643 ~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 700 (754)
..+++....+..++++..+. .|........+-+-.+..|+.+...+..+-+...|+..
T Consensus 538 L~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 538 LQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 89999999999998877663 34445566667777888899999999999888888765
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=1.3e-11 Score=129.33 Aligned_cols=546 Identities=12% Similarity=0.020 Sum_probs=333.5
Q ss_pred cCChhHHHHHhccCCCC---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHH
Q 004425 106 FNRLDVAQKLFDGMLVR---SAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIH 182 (754)
Q Consensus 106 ~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 182 (754)
.|++++|.+++.++.+. +...|.+|-..|-..|+.+.++..+-..-... +-|...|..+-......|.++.|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 49999999999998543 67899999999999999999988765553332 235577888888888999999999999
Q ss_pred HHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCc----c----hHHHHHHHHHHcCChhHHHHHHHHhHHC
Q 004425 183 AFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDV----R----CVNFMILEYNKAGESEMAFHVFVHLLSS 254 (754)
Q Consensus 183 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~li~~~~~~g~~~~A~~~~~~m~~~ 254 (754)
...++.. +++....---...|-+.|+...|.+-|.++.+.+. . .--.++..+...++-+.|++.+......
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999886 44444444456788899999999888877664322 1 2223456677777778888888877663
Q ss_pred C-CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcC---------------------------CCChhH-HHHHHHHH
Q 004425 255 D-FEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGV---------------------------VREISV-GNAIVTMY 305 (754)
Q Consensus 255 g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---------------------------~~~~~~-~~~li~~~ 305 (754)
+ -..+..++++++..+.+...++.+......+..... .++..+ ...+--..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 2 334556778888888888888888877777665222 222222 11111112
Q ss_pred HhcCChHHHHHHHHccCC----CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHH
Q 004425 306 GKHGMSEEAERMFDAISE----RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGL 381 (754)
Q Consensus 306 ~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 381 (754)
.+.+...+++.-|-.... .++..|.-+..+|...|++.+|+.+|..+.....--+...|-.+...+...|..+.|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 223333343333322211 2445666677777777777777777777776554455566666667777777777777
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCC
Q 004425 382 QLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGME 461 (754)
Q Consensus 382 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~ 461 (754)
+.++.++... +.+...-..|...|.+.|+.++|.+.+..+..+|... ....+..
T Consensus 470 e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~-------------------------~e~~a~~ 523 (895)
T KOG2076|consen 470 EFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN-------------------------AEACAWE 523 (895)
T ss_pred HHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc-------------------------hhhcccc
Confidence 7777776643 3344455566666777777777777777765444210 0001112
Q ss_pred CCHHHHHHHHHHHhcccchHHHHHHHHHHHH----------------------hCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004425 462 PDPVTFSRLLSLSASQACLVRGRSLHAYSIK----------------------TGYAADVIVGNALITMYAKCGSIDGAF 519 (754)
Q Consensus 462 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----------------------~~~~~~~~~~~~li~~~~~~g~~~~A~ 519 (754)
|+..........+.+.|+.++-..+...++. .+..........++.+-.+.++.....
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 603 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVME 603 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhh
Confidence 2222222222223333333322222211111 011122223333344444444332222
Q ss_pred HHHhcc--------CCCChh----HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--CCHH--H-HHHHHHHHHhcCCHH
Q 004425 520 QIFKGI--------SDRDIV----SWNAMLSAYALHGLGKGALLLFEEMKREGFA--PDDI--S-ILGVLQACIYSGLSE 582 (754)
Q Consensus 520 ~~~~~~--------~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~--t-~~~ll~a~~~~g~~~ 582 (754)
.-...- ..-.+. .+.-++.++++.+++++|+.+...+...... ++.. . =...+.++...+++.
T Consensus 604 ~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~ 683 (895)
T KOG2076|consen 604 KALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPG 683 (895)
T ss_pred hcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHH
Confidence 211111 111222 2345778899999999999999988864332 2221 2 244566778899999
Q ss_pred HHHHHHHHHHHHhCCCCCc---cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChHHHHHHH
Q 004425 583 GGICLFNEIEQIYGLRPIL---EHFACMVDLLGRAGRLSEAMNLINSS-PFSES--PLLWRTLVSVSKLMANSKFSILAS 656 (754)
Q Consensus 583 ~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~ 656 (754)
.|..+++.|...+++..++ ..|++......+.|+-.--..++... ...|+ +.............+.+.-|.+.+
T Consensus 684 ~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y 763 (895)
T KOG2076|consen 684 DAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEY 763 (895)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHH
Confidence 9999999998865555443 35665666666666655555555443 22232 222222233445678899999999
Q ss_pred HHhhccCCCCcchHHHHHHHHHh
Q 004425 657 KRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 657 ~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
-+++..+|++|..-..+|-++..
T Consensus 764 ~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 764 MRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHH
Confidence 99999999999877777766543
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=7.2e-12 Score=120.50 Aligned_cols=202 Identities=11% Similarity=0.099 Sum_probs=162.6
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhHHHHHHHHHHHcCChHHHHHH
Q 004425 476 SQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGIS---DRDIVSWNAMLSAYALHGLGKGALLL 552 (754)
Q Consensus 476 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 552 (754)
..|+++.|.+.+.+++...-......|| +.-.+.+.|++++|++.|-.+. ..++...-.+.+.|-...+...|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 4577888888888887654333333333 2335678899999999987663 35666666777888888999999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 004425 553 FEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFS 630 (754)
Q Consensus 553 ~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 630 (754)
+-+... +-| |...+.-|...|-+.|+-.+|.+++..--. -++.+.++..-|...|....-+++|+.+|++. -..
T Consensus 581 ~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 581 LMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 988776 555 556888899999999999999998765533 46667888888899999999999999999976 568
Q ss_pred CCHHHHHHHHHHH-HhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCC
Q 004425 631 ESPLLWRTLVSVS-KLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGM 682 (754)
Q Consensus 631 p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 682 (754)
|+..-|-.++..| ++.|++.+|..+|+......|+|...+..|..+....|.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999988877 456999999999999999999999999999999888875
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.60 E-value=1.6e-09 Score=109.64 Aligned_cols=415 Identities=11% Similarity=0.039 Sum_probs=323.7
Q ss_pred HHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC---CCchhHHHHHHHHHhcCChhH
Q 004425 268 SVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE---RNLISWTALISGYVRSGHGGK 344 (754)
Q Consensus 268 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 344 (754)
++.....+.+.|.-++...++. ++.+...+ -+|.+..-++.|.++++...+ .+...|-+-...--.+|+.+.
T Consensus 384 KaAVelE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH
Confidence 3344455566677777777765 23333333 456666778889988887765 466777776666677888888
Q ss_pred HHHHHHH----hHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcc--hhHHHHHHHHHHhCCCHHHHHHH
Q 004425 345 AINGFLE----FLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSD--VRLGTALVDIYAKGGDLKSARML 418 (754)
Q Consensus 345 A~~~~~~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~ 418 (754)
..++..+ +...|+..+...|..=..+|-..|..-.+..+....+..|++.. ..++..-.+.|.+.+.++-|+.+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 8777665 45678999999998888999999999999999999999887543 46788888889999999999999
Q ss_pred HhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCC
Q 004425 419 LDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGY 495 (754)
Q Consensus 419 ~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 495 (754)
|.... ..+...|......--. .|..++-..+|++.... ++-....|....+-.-..|++..|+.++..+.+.+
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~--hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~- 614 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKS--HGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN- 614 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHh--cCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-
Confidence 98665 4455667666555555 89999999999999886 23333556666667778899999999999999876
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 004425 496 AADVIVGNALITMYAKCGSIDGAFQIFKGISD--RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVL 572 (754)
Q Consensus 496 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll 572 (754)
+.+..+|-+-+..-....+++.|..+|.+... +....|.--+....-.+..++|++++++.++ .-|+.. .|..+.
T Consensus 615 pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 615 PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLG 692 (913)
T ss_pred CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHh
Confidence 44788899999999999999999999998864 6677777767777778999999999999998 678875 677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChH
Q 004425 573 QACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS--PFSESPLLWRTLVSVSKLMANSK 650 (754)
Q Consensus 573 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~ 650 (754)
+.+.+.++++.|...|..=.+ ..+-.+-.|-.+.++=.+.|.+-+|..++++. ..+.+...|...+..-.+.|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 889999999999998876543 23334567888888889999999999999976 33448999999999999999999
Q ss_pred HHHHHHHHhhccCCCC------------------------------cchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 651 FSILASKRLLDLEPKD------------------------------AGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 651 ~a~~~~~~~~~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.|..+..++++.-|++ +......+.++....+++.|.+.|.+...
T Consensus 771 ~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 771 QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999888877655543 33455666777788888888888876544
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.1e-11 Score=120.65 Aligned_cols=213 Identities=13% Similarity=0.144 Sum_probs=174.2
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 004425 476 SQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLL 552 (754)
Q Consensus 476 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 552 (754)
-.|+.-.+.+-++..++..-.++ ..|--+..+|....+.++.+..|+.... .|..+|..-...+.-.+++++|..-
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 35777788888888887653322 2266666779999999999999988754 4566777777777788999999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 004425 553 FEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFS 630 (754)
Q Consensus 553 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 630 (754)
|++.++ +.|+. ..|..+.-+.-+.+.++++...|+..++ .++.-++.|+.....+..++++++|.+.|+.. ..+
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999998 77866 4788888888899999999999999988 57777899999999999999999999999854 344
Q ss_pred CC---------HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 631 ES---------PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 631 p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
|+ +.+-.+++-.- -.+++..|+.+++++++++|....+|..|+.+-.+.|+.++|+++|++-.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 43 33334444433 33899999999999999999999999999999999999999999998753
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=7.8e-15 Score=145.65 Aligned_cols=248 Identities=17% Similarity=0.135 Sum_probs=110.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTF-SRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQ 520 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 520 (754)
.|++++|++++++.......|+...| ..+...+...++.+.|.+.++.+...+-. ++..+..++.. ...+++++|.+
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~ 98 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALK 98 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccc
Confidence 66666666666544333223444433 33444555677788888888877765532 55566677776 68889999998
Q ss_pred HHhccCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 004425 521 IFKGISD--RDIVSWNAMLSAYALHGLGKGALLLFEEMKREG-FAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGL 597 (754)
Q Consensus 521 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 597 (754)
+++..-+ ++...+..++..+...|+++++..+++++.... .+++...|..+...+.+.|+.++|.+.+++..+ .
T Consensus 99 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~ 175 (280)
T PF13429_consen 99 LAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE---L 175 (280)
T ss_dssp -------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---H
T ss_pred ccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---c
Confidence 8877633 566677888888999999999999999987533 234556777888888999999999999999976 3
Q ss_pred CC-CccHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHH
Q 004425 598 RP-ILEHFACMVDLLGRAGRLSEAMNLINSS--PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVS 674 (754)
Q Consensus 598 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 674 (754)
.| +......++..+...|+.+++.++++.. ..+.|+..|..+..++...|+.++|...++++.+.+|+|+.....++
T Consensus 176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a 255 (280)
T PF13429_consen 176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYA 255 (280)
T ss_dssp -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccc
Confidence 45 4677888999999999999987777654 12346778999999999999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHh
Q 004425 675 NMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 675 ~~~~~~g~~~~a~~~~~~m~ 694 (754)
+++...|+.++|.+++++.-
T Consensus 256 ~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 256 DALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHT----------------
T ss_pred cccccccccccccccccccc
Confidence 99999999999999988653
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=9.5e-13 Score=133.56 Aligned_cols=244 Identities=10% Similarity=0.063 Sum_probs=130.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhC-C-CCchhHHHHHHHHHHhcCCHHHHHHH
Q 004425 444 DEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTG-Y-AADVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 444 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
+..+|+.+|...... +.-+......+..+|-..+++++++.+|+.+.+.. . .-+..+|.+.+--+-+.=.+..--+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 345566666553332 12222344455556666666666666666665432 1 12344454444332221111111111
Q ss_pred HhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC
Q 004425 522 FKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI 600 (754)
Q Consensus 522 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 600 (754)
+-.+....+.+|.++.++|.-+++++.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+.... .+
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~ 485 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VD 485 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CC
Confidence 1111123345666666666666666666666666666 555 334666665556666666666666655522 33
Q ss_pred ccHHH---HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHH
Q 004425 601 LEHFA---CMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSN 675 (754)
Q Consensus 601 ~~~~~---~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 675 (754)
..+|+ -++-.|.++++++.|+-.|+++ .+.| +......++..+.+.|+.++|++++++++-++|.|+..-+..+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 33433 4555566666666666666544 4444 44445555555666666666666666666666666666666666
Q ss_pred HHHhcCCchHHHHHHHHHhh
Q 004425 676 MYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 676 ~~~~~g~~~~a~~~~~~m~~ 695 (754)
++...+++++|...++++++
T Consensus 566 il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHhhcchHHHHHHHHHHHH
Confidence 66666666666666666655
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=1e-10 Score=112.74 Aligned_cols=466 Identities=13% Similarity=0.091 Sum_probs=271.9
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHhccCCChHHHHHHHHHHHHHCCCCc----HHHHHHHHHH
Q 004425 129 SLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSV-ILEACSLLEDRIFGEQIHAFAIKSGFENN----VFVGTSLISM 203 (754)
Q Consensus 129 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~ 203 (754)
.|..-|..+....+|+..|+-..+...-|+.-.... +-+.+.+.+.+.+|.+++......-...+ ..+.+.+--.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 345556667777888888888887777777655433 33446677788888888877665532222 2344555556
Q ss_pred hHhcCCHhHHHHHhccCCC--CCcch-HHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchH--------HHHHHHHhc
Q 004425 204 YFHSGCFREAENVFRGLAY--KDVRC-VNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTF--------TNVISVCYE 272 (754)
Q Consensus 204 ~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--------~~ll~~~~~ 272 (754)
+.+.|.+++|+.-|+...+ ||..+ ||.+| ++..-|+.++..+.|.+|..-...||..-| ..|+.-..+
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i-~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLII-CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhh-hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 7788999999999887653 45543 55444 444567888888889888865444443322 222222222
Q ss_pred cCCchH--------HHHHHH---HHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCc--hhHHHHHHHHHhc
Q 004425 273 NLGVEE--------GKQLHG---LAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNL--ISWTALISGYVRS 339 (754)
Q Consensus 273 ~~~~~~--------a~~~~~---~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~ 339 (754)
...+.. |++..- .++.--+.||-.. -.+...+.++.-..... ..--.-...|.++
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 111111 111110 0000001111000 01111222111110000 0000112347788
Q ss_pred CChhHHHHHHHHhHhcCcccChhhHHHH--HHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHH
Q 004425 340 GHGGKAINGFLEFLDLGICCDSSCLATV--IDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARM 417 (754)
Q Consensus 340 g~~~~A~~~~~~m~~~g~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 417 (754)
|+++.|++++.-+.+..-+.-...-+.| +...-...++..|.++-+..+... .-+....+.-.+.-...|++++|.+
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 8888888888877655433222222222 222222345566666555544321 1111111111222334688888888
Q ss_pred HHhcCCCCChhhHHHHHH---HHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhC
Q 004425 418 LLDGFSCKYTAEFNAILS---GFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTG 494 (754)
Q Consensus 418 ~~~~~~~~~~~~~~~li~---~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 494 (754)
.+++....|.....+|.. .+-. .|+.++|++.|-++..- +..+...+..+...|....+...|.+++.+....
T Consensus 512 ~ykeal~ndasc~ealfniglt~e~--~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFNIGLTAEA--LGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHcCchHHHHHHHHhcccHHH--hcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 888887777665555543 2333 78888888888776532 2334455666677777777888888777666542
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004425 495 YAADVIVGNALITMYAKCGSIDGAFQIFKGIS---DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGV 571 (754)
Q Consensus 495 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 571 (754)
++.|+.+..-|.+.|-+.|+-..|.+.+-.-- ..|+.+..-|...|.....+++|+.+|++..- +.|+.+-|-.+
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlm 665 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLM 665 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHH
Confidence 45678888888888888888888887654432 24555555577777777888888888888766 77888888777
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCC
Q 004425 572 LQACI-YSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGR 616 (754)
Q Consensus 572 l~a~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 616 (754)
+..|. +.|++++|..+|+..-. .++-+++....|+...+..|.
T Consensus 666 iasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccc
Confidence 77654 57888888888888765 567777777777777666663
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.5e-10 Score=110.85 Aligned_cols=314 Identities=11% Similarity=0.091 Sum_probs=222.4
Q ss_pred hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHH-HHHHHHhhhhcCCHHHHH
Q 004425 371 CSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFN-AILSGFMEKIADDEEDVM 449 (754)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~~~A~ 449 (754)
..+.|....|...+...+.. -+..|.+.+....-..+.+.+..+....+..+...-. .+..++-. ..+.++++
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e--l~q~~e~~ 247 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE--LHQHEEAL 247 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH--HHHHHHHH
Confidence 34456666666666555431 1223333333333334444444444333332211111 12234444 55777888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 004425 450 VLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGY--AADVIVGNALITMYAKCGSIDGAFQIFKGISD 527 (754)
Q Consensus 450 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 527 (754)
.-.+.....|+.-+...-+....+.-...+++.|..+|+++.+... --|..+|+.++-.-..+.++.--....-.+.+
T Consensus 248 ~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idK 327 (559)
T KOG1155|consen 248 QKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDK 327 (559)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 8888888777666655555555556678889999999999988731 12566776665333332233222222223333
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHH
Q 004425 528 RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFA 605 (754)
Q Consensus 528 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 605 (754)
--+.|..++.+-|.-.++.++|+..|++.++ +.|... .|+.+..-|...++...|++-++.+++ +.| |-..|-
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~DyRAWY 402 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRDYRAWY 402 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchhHHHHh
Confidence 3445666778888889999999999999999 677764 777788899999999999999999966 444 556888
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCc
Q 004425 606 CMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGML 683 (754)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 683 (754)
.++.+|.-.+...=|+-+|++. ..+| |+..|.+|+..|.+.++.++|++.|++++...-.+..+|..|+++|.+.++.
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 9999999999999999999876 5566 8999999999999999999999999999999888889999999999999999
Q ss_pred hHHHHHHHHHhh
Q 004425 684 DEAAKVRTTMND 695 (754)
Q Consensus 684 ~~a~~~~~~m~~ 695 (754)
++|...+++-.+
T Consensus 483 ~eAa~~yek~v~ 494 (559)
T KOG1155|consen 483 NEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 41
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.48 E-value=2.3e-08 Score=101.31 Aligned_cols=458 Identities=13% Similarity=0.109 Sum_probs=254.1
Q ss_pred hhhhHHHHHHHHccCChhHHHHHhccCC-----CCChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004425 93 TFEANNLINLYAKFNRLDVAQKLFDGML-----VRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILE 167 (754)
Q Consensus 93 ~~~~~~li~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 167 (754)
+..|-..+..+.++|++..-+..|+... ......|...+.-.-..+-++-+++++++..+- ++..-.--+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 3456666667777888888888888752 224567888888888888888888888887653 4444667777
Q ss_pred HhccCCChHHHHHHHHHHHHHC------CCCcHHHHHHHHHHhHhcCCH---hHHHHHhccCCCC--C--cchHHHHHHH
Q 004425 168 ACSLLEDRIFGEQIHAFAIKSG------FENNVFVGTSLISMYFHSGCF---REAENVFRGLAYK--D--VRCVNFMILE 234 (754)
Q Consensus 168 ~~~~~~~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~--~--~~~~~~li~~ 234 (754)
.++..+++++|.+.+..++... .+.+...|.-+.+..++.-+. -....+++.+..+ | ...|++|.+.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7888888888888877765432 244555666666666554332 2233445544433 2 3368888888
Q ss_pred HHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHH-HhcCCCChhHHHHHHHHHHhcCChHH
Q 004425 235 YNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAV-KFGVVREISVGNAIVTMYGKHGMSEE 313 (754)
Q Consensus 235 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~ 313 (754)
|.+.|.+++|.++|++-.+. ..+..-|+.+.++|+.-.....+..+ +... +.|-+-+... ++-
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~ed~~d-------------l~~ 321 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEEDDVD-------------LEL 321 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChhhhhh-------------HHH
Confidence 89999999999888886654 22444566666666542211111110 0000 1111111111 111
Q ss_pred HHHHHHccCC---------------CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccCh------hhHHHHHHHhc
Q 004425 314 AERMFDAISE---------------RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDS------SCLATVIDGCS 372 (754)
Q Consensus 314 A~~~~~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~ 372 (754)
...-|+.+.+ .++..|..-+. +..|+..+-...|.+..+. +.|.. ..+..+.+.|-
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHH
Confidence 1222222211 24455554443 3356667777777776654 33322 23555566666
Q ss_pred ccCChHHHHHHHHHHHHhCCCcc---hhHHHHHHHHHHhCCCHHHHHHHHhcCC--CCChhhHHHHHHHHhhhhcCCHHH
Q 004425 373 VCSNLELGLQLHGFAIKHGYLSD---VRLGTALVDIYAKGGDLKSARMLLDGFS--CKYTAEFNAILSGFMEKIADDEED 447 (754)
Q Consensus 373 ~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~ 447 (754)
..|+++.|..+|++..+...+-- ..+|.....+-.+..+++.|.++.+... +.+.. ..+.. ++..-+
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~------~~~yd--~~~pvQ 470 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE------LEYYD--NSEPVQ 470 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh------hhhhc--CCCcHH
Confidence 77777777777777766443322 3344444555555556666666655443 11100 01111 111100
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 004425 448 VMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD 527 (754)
Q Consensus 448 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 527 (754)
+ .+.-+...|...++.-...|-++..+.+++.+++..+. ++.+.-.....+-...-++++.++|++-..
T Consensus 471 ~----------rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 471 A----------RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred H----------HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 0 01112334555566666667777788888888776653 222222233334555667888888876543
Q ss_pred ----CChh-HHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHH
Q 004425 528 ----RDIV-SWNAMLSAYALH---GLGKGALLLFEEMKREGFAPDDISILGVLQA--CIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 528 ----~~~~-~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~~~~ 593 (754)
|++. .|+..+.-+.+. ...+.|..+|++.++ |.+|...-+.-|+.+ -.+-|....|+.+++++..
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5553 576655544432 347788888888887 666665432223222 2234666666666665443
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.4e-09 Score=104.14 Aligned_cols=192 Identities=13% Similarity=0.096 Sum_probs=100.7
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcC
Q 004425 468 SRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHG 544 (754)
Q Consensus 468 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 544 (754)
..+..-|+-.++.++|..+|+++++.+ +.....|+.+.+-|....+...|.+-|+...+ .|-..|-.|.++|.-.+
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc
Confidence 334444444555555555555555544 23344555555566666666666666655443 34455666666666666
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHH
Q 004425 545 LGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNL 623 (754)
Q Consensus 545 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 623 (754)
.+.-|+-.|++..+ ++|+ ...|.+|..+|.+.++.++|++.|.+... .| ..+...+..++++|.+.++.++|..+
T Consensus 413 Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~-~~-dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 413 MHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL-LG-DTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred chHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh-cc-ccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 66666666666555 4453 34556666666666666666666666554 12 22344555666666666666666555
Q ss_pred HHhC-------C-CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Q 004425 624 INSS-------P-FSESP-LLWRTLVSVSKLMANSKFSILASKRLLDLEP 664 (754)
Q Consensus 624 ~~~~-------~-~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 664 (754)
+++- + ..|.. .+---|...+.+.+++++|.....+...-++
T Consensus 489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 5432 1 11211 1111244445555666666655555554433
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=6.8e-12 Score=127.47 Aligned_cols=277 Identities=16% Similarity=0.090 Sum_probs=213.9
Q ss_pred CHHHHHHHHhcCC--CCChh-hHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcccchHHHHH
Q 004425 411 DLKSARMLLDGFS--CKYTA-EFNAILSGFMEKIADDEEDVMVLFSQQRLAG--MEPDPVTFSRLLSLSASQACLVRGRS 485 (754)
Q Consensus 411 ~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~ 485 (754)
+..+|...|..++ ..|.. ....+..+|.. .+++++|.++|+.+.+.. ..-+..+|.+.+..+-+.-.+. .
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFE--l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls---~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFE--LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS---Y 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH---H
Confidence 4567777777754 22333 22345567777 888888888888887742 1123467777776543322211 1
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 004425 486 LHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR---DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFA 562 (754)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 562 (754)
+-+.+.+. -+-.+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....++.|...|+..+. +.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 11222222 2567899999999999999999999999999764 446788888888889999999999999887 66
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 004425 563 PDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRT 638 (754)
Q Consensus 563 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 638 (754)
|+. ..|..+...|.++++++.|.-.|+++. .+.|. .....++...+.+.|+.|+|+++++++ -..| |+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 765 488889999999999999999999995 46675 556778889999999999999999976 3344 6666656
Q ss_pred HHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 639 LVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 639 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
-+..+...+++++|...++++.++-|+++..|..++.+|-+.|+.+.|..-|.-|.+...
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 666777889999999999999999999999999999999999999999999988766444
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=4.9e-11 Score=124.00 Aligned_cols=274 Identities=11% Similarity=0.076 Sum_probs=189.0
Q ss_pred CCCHHHHHHHHhcCCCC-ChhhHHHHHH--HHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhcccchHHH
Q 004425 409 GGDLKSARMLLDGFSCK-YTAEFNAILS--GFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFS--RLLSLSASQACLVRG 483 (754)
Q Consensus 409 ~g~~~~A~~~~~~~~~~-~~~~~~~li~--~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a 483 (754)
.|+++.|++.+...... +....+.++. +..+ .|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~--~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQ--RGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 46666666666654422 1122222332 2234 78888888888888764 55553332 234567778888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCh-----------hHHHHHHHHHHHcCChHHHHHH
Q 004425 484 RSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDI-----------VSWNAMLSAYALHGLGKGALLL 552 (754)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~ 552 (754)
...++.+.+.. +-++.....+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888887765 45677777888888888888888888887764211 1333344444444555666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 004425 553 FEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE 631 (754)
Q Consensus 553 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 631 (754)
++.+.+. .+.+......+..++...|+.++|.+.+++..+ ..|+.... ++......++.+++++.+++. ...|
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 6665432 334566777888889999999999999988855 34443222 223333558889998888765 3345
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 632 -SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 632 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
|+....++...|...+++++|...++++++.+|+ ...+..|+.++.+.|+.++|...+++-.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777889999999999999999999999999999 4567899999999999999999998653
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.45 E-value=9.1e-11 Score=121.98 Aligned_cols=149 Identities=11% Similarity=-0.020 Sum_probs=102.9
Q ss_pred HHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004425 509 YAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGI 585 (754)
Q Consensus 509 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 585 (754)
.....+.+...++++.+.+ .++.....+..++...|+.++|.+++++..+ ..||... .++.+....++.+++.
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l--~~l~~~l~~~~~~~al 314 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERL--VLLIPRLKTNNPEQLE 314 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHH--HHHHhhccCCChHHHH
Confidence 3334455566666666643 4566677777788888888888888887776 3344421 1233444557888888
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Q 004425 586 CLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLE 663 (754)
Q Consensus 586 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 663 (754)
+..+...+ ..+-+...+.++..++.+.|++++|.+.|++. ...|+...+..+...+...|+.++|.+.+++.+.+.
T Consensus 315 ~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 315 KVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 88887765 33344556778888888888888888888765 556887777788888888888888888888887653
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=4e-08 Score=95.94 Aligned_cols=480 Identities=11% Similarity=0.051 Sum_probs=332.6
Q ss_pred HhcCCHhHHHHHhccCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHH
Q 004425 205 FHSGCFREAENVFRGLAY---KDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQ 281 (754)
Q Consensus 205 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 281 (754)
...+++..|..+|++... ++...|---+..=.++.....|..++++....=...|..=| --+..=-..|++..|.+
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHH
Confidence 345677788888887654 35566777777778888888888888887664222232222 22222334688889999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccC--CCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCccc
Q 004425 282 LHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAIS--ERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICC 359 (754)
Q Consensus 282 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 359 (754)
+|+.-.+. .|+...|++.|+.=.+-..++.|..++++.. .|++.+|--...--.+.|....|..+|....+. -.
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hh
Confidence 99887664 7899999999999889999999999998864 588888888888888889988888888877653 12
Q ss_pred Chh----hHHHHHHHhcccCChHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHhCCCHHHHHHHH--------hcCCCCC
Q 004425 360 DSS----CLATVIDGCSVCSNLELGLQLHGFAIKHGYLS-DVRLGTALVDIYAKGGDLKSARMLL--------DGFSCKY 426 (754)
Q Consensus 360 ~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~~~ 426 (754)
|.. .|.++..-=.+...++.|.-+|+..+.+=... ....|..+...--+-|+.....+.. +.+...|
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 232 23333333345677888888888888753222 2445555555544556544443332 2233333
Q ss_pred ---hhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHH----HH-H---HhcccchHHHHHHHHHHHHh
Q 004425 427 ---TAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP--VTFSRL----LS-L---SASQACLVRGRSLHAYSIKT 493 (754)
Q Consensus 427 ---~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l----l~-~---~~~~~~~~~a~~~~~~~~~~ 493 (754)
-.+|--.+..--. .|+.+...++|++.+.. ++|-. ..|... |+ + -....+.+.+.++++..++
T Consensus 319 p~nYDsWfdylrL~e~--~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~- 394 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEES--VGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD- 394 (677)
T ss_pred CCCchHHHHHHHHHHh--cCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 3456666666666 89999999999999875 45533 111111 11 1 1356788999999999988
Q ss_pred CCCCchhHHHHHHHHH----HhcCCHHHHHHHHhccC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHH
Q 004425 494 GYAADVIVGNALITMY----AKCGSIDGAFQIFKGIS--DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDI 566 (754)
Q Consensus 494 ~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 566 (754)
=++....++.-+--+| .++.++..|.+++.... .|-..++...|..-.+.++++....+|++.++ ..| |..
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~ 472 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCY 472 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhH
Confidence 3444555555444344 57889999999998775 47778888888888999999999999999999 556 456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSESPLLWRTLVSVSK- 644 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~- 644 (754)
+|......-...|+.+.|..+|+-+...-.+......|-..|+.=...|.++.|..+++++ ...+...+|-++...-.
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s 552 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEAS 552 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcc
Confidence 8888888888899999999999999874333334456778888889999999999999876 44456668988876554
Q ss_pred ----hcC-----------ChHHHHHHHHHhhcc----CCCCcc--hHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 645 ----LMA-----------NSKFSILASKRLLDL----EPKDAG--SFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 645 ----~~g-----------~~~~a~~~~~~~~~~----~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
..+ +...|..+|+++... +|.... .+-..-+.-...|.-.+...+-++|..
T Consensus 553 ~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 553 ASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred ccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 334 667888888887653 333222 122223334456777777777777754
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=1.4e-08 Score=99.08 Aligned_cols=443 Identities=15% Similarity=0.100 Sum_probs=321.7
Q ss_pred HcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHH
Q 004425 237 KAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAER 316 (754)
Q Consensus 237 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 316 (754)
..+++..|..+|++.+.... -+...+.--+..=.+...+..|..+++..+..-...|. .|--.+.+=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHH
Confidence 45677889999999876542 24444555566667788999999999998876433333 34444555566899999999
Q ss_pred HHHccC--CCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHH-hCC-
Q 004425 317 MFDAIS--ERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIK-HGY- 392 (754)
Q Consensus 317 ~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~- 392 (754)
+|++-. +|+...|++.|+--.+...++.|..+|++..- +.|+..+|..-...=.+.|+...+..+|+.+++ .|-
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 999876 49999999999999999999999999999876 469999999888888899999999999999887 221
Q ss_pred CcchhHHHHHHHHHHhCCCHHHHHHHHhcC----CCCC-hhhHHHHHHHHhhhhcCCH---HHHHH-----HHHHHHHcC
Q 004425 393 LSDVRLGTALVDIYAKGGDLKSARMLLDGF----SCKY-TAEFNAILSGFMEKIADDE---EDVMV-----LFSQQRLAG 459 (754)
Q Consensus 393 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~li~~~~~~~~~~~---~~A~~-----~~~~m~~~g 459 (754)
..+...+.++...-.++..++.|.-+|+-. +... ...|.....-=-+ -|+. ++++- -++.++..+
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKq--fGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQ--FGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH--hcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 233455666666666788888888887643 3222 2233333322222 4443 33332 234444432
Q ss_pred CCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCch--hHHHHHHHH--------HHhcCCHHHHHHHHhccCC--
Q 004425 460 MEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADV--IVGNALITM--------YAKCGSIDGAFQIFKGISD-- 527 (754)
Q Consensus 460 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~--------~~~~g~~~~A~~~~~~~~~-- 527 (754)
+-|-.+|--.++.-...|+.+...++++.++.. ++|-. ..|.-.|-. -....+++.+.++|+...+
T Consensus 319 -p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI 396 (677)
T KOG1915|consen 319 -PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI 396 (677)
T ss_pred -CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 456678888888888999999999999999874 44421 112221111 1346788999999987754
Q ss_pred CC-hh----HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-Cc
Q 004425 528 RD-IV----SWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRP-IL 601 (754)
Q Consensus 528 ~~-~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~ 601 (754)
|. .. .|-....--.++.+...|.+++...+ |.-|...+|...|..-.+.+.+|....+|++..+ ..| +.
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle---~~Pe~c 471 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE---FSPENC 471 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---cChHhh
Confidence 22 22 34444444567788999999988766 5789999999999999999999999999999976 344 46
Q ss_pred cHHHHHHHHHhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 602 EHFACMVDLLGRAGRLSEAMNLINSSPFSE----SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
.+|.-.+.+=...|+.+.|..+|+-.-..| -...|.+.+..-...|.++.|..+++++++..+... .|...+..-
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe 550 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFE 550 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHh
Confidence 678888888888999999999998653344 367899999999999999999999999999888744 777776654
Q ss_pred H-----hcC-----------CchHHHHHHHHH
Q 004425 678 A-----GQG-----------MLDEAAKVRTTM 693 (754)
Q Consensus 678 ~-----~~g-----------~~~~a~~~~~~m 693 (754)
. ..| ....|..+|+..
T Consensus 551 ~s~~~~~~~~~~~~~e~~~~~~~~AR~iferA 582 (677)
T KOG1915|consen 551 ASASEGQEDEDLAELEITDENIKRARKIFERA 582 (677)
T ss_pred ccccccccccchhhhhcchhHHHHHHHHHHHH
Confidence 4 334 455677777765
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=5.7e-10 Score=116.74 Aligned_cols=213 Identities=12% Similarity=-0.003 Sum_probs=107.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH-------HhcC
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPD-PVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMY-------AKCG 513 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-------~~~g 513 (754)
.|++++|...++.+.+. .|+ ...+..+...+...|+++.+.+++..+.+.+..+.......-..++ ....
T Consensus 166 ~~~~~~Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 166 QNELHAARHGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555555555554 232 2344455555555666666666655555554322221111111111 1111
Q ss_pred CHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHH
Q 004425 514 SIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISIL-GVLQACIYSGLSEGGICLFN 589 (754)
Q Consensus 514 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~ 589 (754)
..+...+.++..++ .+...+..+...+...|+.++|.+++++..+ ..||..... .++..+.
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l~~~~------------- 308 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLCLPIP------------- 308 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHHHHhh-------------
Confidence 22333334444432 3555666666666777777777777777666 334432110 0111111
Q ss_pred HHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH--HHHHHHHHHHHhcCChHHHHHHHH--HhhccC
Q 004425 590 EIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SP--LLWRTLVSVSKLMANSKFSILASK--RLLDLE 663 (754)
Q Consensus 590 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~ 663 (754)
....++.+++++.+++. ...| |+ ....++...|.+.|++++|...++ ++++..
T Consensus 309 ---------------------~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~ 367 (409)
T TIGR00540 309 ---------------------RLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ 367 (409)
T ss_pred ---------------------hcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC
Confidence 01123333444444322 1223 33 555667777777777777777777 466666
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 664 PKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 664 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
|++ ..+..++.++.+.|+.++|.+++++-
T Consensus 368 p~~-~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 368 LDA-NDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 663 33557777777777777777777764
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.41 E-value=2e-10 Score=120.20 Aligned_cols=282 Identities=13% Similarity=0.013 Sum_probs=180.1
Q ss_pred hcCChhHHHHHHHHhHhcCcccChh-hHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHH
Q 004425 338 RSGHGGKAINGFLEFLDLGICCDSS-CLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSAR 416 (754)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 416 (754)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+..+.+..-.+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456677777766665443 33322 223334455666777777777777665432222233444567777788888888
Q ss_pred HHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---hcccchHHHHHHHHHH
Q 004425 417 MLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLS---ASQACLVRGRSLHAYS 490 (754)
Q Consensus 417 ~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~a~~~~~~~ 490 (754)
..++.+. +.+...+..+...+.. .|++++|.+++..+.+.++.+.......-..+. ...+..+.+.+.+..+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~--~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIR--SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8887765 3455567777778888 899999999999999886443332211111111 2222333333444444
Q ss_pred HHhC---CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhH---HHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 004425 491 IKTG---YAADVIVGNALITMYAKCGSIDGAFQIFKGISD--RDIVS---WNAMLSAYALHGLGKGALLLFEEMKREGFA 562 (754)
Q Consensus 491 ~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 562 (754)
.+.. .+.++..+..++..+...|+.++|.+++++..+ ||... +..........++.+.+++.+++..+ ..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hC
Confidence 4432 124788889999999999999999999998865 44331 12222223345677888888888776 45
Q ss_pred CCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHh
Q 004425 563 PDDI---SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINS 626 (754)
Q Consensus 563 p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (754)
|+.. ...++...|.+.|++++|.++|+.... ....|+.+.+..+..++.+.|+.++|.+++++
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6554 345677778888888888888885444 45667777777788888888888888777765
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.3e-09 Score=108.86 Aligned_cols=245 Identities=13% Similarity=0.054 Sum_probs=165.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
.+++.+.+++++...+.. +++...+..-|..+...|+..+-..+-..+++. .+..+.+|-++.-.|.-.|+.++|++.
T Consensus 257 ~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred cChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 566666666666666542 344444444455555666655555555555553 355667777777777777888888888
Q ss_pred HhccCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 004425 522 FKGISDRD---IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGL 597 (754)
Q Consensus 522 ~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 597 (754)
|.+...-| ...|-.....|+-.|..++|+..+...-+ +-|- ...+.-+.--|.+.++.+.|.++|.+. +++
T Consensus 335 ~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A---~ai 409 (611)
T KOG1173|consen 335 FSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA---LAI 409 (611)
T ss_pred HHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHHHHHHHHHHH---Hhc
Confidence 87765433 35787788888888888888887777666 3332 234555566677788888888888777 455
Q ss_pred CCC-ccHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 598 RPI-LEHFACMVDLLGRAGRLSEAMNLINSSP--------FSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 598 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
-|+ +..++-+.-+....+.+.+|..+|+..- ..+ =..+|+.|+.+|++.+..++|+..+++++.+.|.++
T Consensus 410 ~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~ 489 (611)
T KOG1173|consen 410 APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA 489 (611)
T ss_pred CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch
Confidence 554 3455555555666777778877776431 111 134567777888888888888888888888888888
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 668 GSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
.+|..+|-+|...|+.+.|.+.|.+.
T Consensus 490 ~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 490 STHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred hHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 88888888888888888888887764
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.38 E-value=1.5e-12 Score=129.28 Aligned_cols=252 Identities=13% Similarity=0.156 Sum_probs=106.8
Q ss_pred HHHHHHHhCCCHHHHHHHHhcC-C----CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 004425 401 ALVDIYAKGGDLKSARMLLDGF-S----CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSA 475 (754)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~~-~----~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 475 (754)
.+...+.+.|++++|.++++.. . ..+...|..+...... .++.+.|...++++...+.. +...+..++.. .
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~--~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS--LGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccc-ccccccccccc-c
Confidence 3455566667777777766432 1 2233334444444444 77788888888887765422 33445555555 6
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-----CCChhHHHHHHHHHHHcCChHHHH
Q 004425 476 SQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGIS-----DRDIVSWNAMLSAYALHGLGKGAL 550 (754)
Q Consensus 476 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~ 550 (754)
..+++++|.++.....+.. +++..+..++..+.+.|+++++.++++.+. ..+...|..+...+.+.|+.++|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7788888888877665543 456667778888889999999998888753 356678888889999999999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 004425 551 LLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-P 628 (754)
Q Consensus 551 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 628 (754)
+.+++.++ ..|+ ......++..+...|+.+++.++++...+. .+.+...+..++.+|...|+.++|+.++++. .
T Consensus 167 ~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 167 RDYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 99999998 6676 456778888999999999999999888773 3566677889999999999999999999876 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Q 004425 629 FSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDL 662 (754)
Q Consensus 629 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 662 (754)
..| |+.....+..++...|+.++|..+.+++++.
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 234 7888889999999999999999999887753
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=1.1e-10 Score=113.09 Aligned_cols=198 Identities=13% Similarity=0.028 Sum_probs=164.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004425 497 ADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQ 573 (754)
Q Consensus 497 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 573 (754)
.....+..+...|...|++++|...+++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456677788899999999999999987753 345678888899999999999999999999843 224457778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 004425 574 ACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKF 651 (754)
Q Consensus 574 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 651 (754)
.+...|++++|.+.++++............+..+..++.+.|++++|.+.+++. ...| +...|..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999773222233456778899999999999999999865 3334 57788899999999999999
Q ss_pred HHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 652 SILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 652 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
|...++++++..|.++..+..++.++...|++++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888888999999999999999999999888755
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=3.4e-09 Score=101.65 Aligned_cols=276 Identities=15% Similarity=0.138 Sum_probs=188.3
Q ss_pred CCCHHHHHHHHhcCCCC-ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHH
Q 004425 409 GGDLKSARMLLDGFSCK-YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLH 487 (754)
Q Consensus 409 ~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 487 (754)
.|++..|++...+-.+. +....+.++.+-+....|+.+.+-.++.+..+.--.++...+-+..+.....|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 68888888887765532 22233444433333227888888888887776533444455566666777788888888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCh-----------hHHHHHHHHHHHcCChHHHHHHHHHH
Q 004425 488 AYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDI-----------VSWNAMLSAYALHGLGKGALLLFEEM 556 (754)
Q Consensus 488 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m 556 (754)
..+.+.+ +-.+.+......+|.+.|++.+...+...+.+... .+|+.++.-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8887765 44666777778888888888888888888765322 35666666655555555544455554
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHH----HhCCCCCC
Q 004425 557 KREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLI----NSSPFSES 632 (754)
Q Consensus 557 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~p~ 632 (754)
-++ .+-+...-..++.-+...|+.++|.++.+...+ .+..|+. ..++.. .+-++.+.=++.+ ...+. +
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L---~~~~~~-l~~~d~~~l~k~~e~~l~~h~~--~ 327 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRL---CRLIPR-LRPGDPEPLIKAAEKWLKQHPE--D 327 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhH---HHHHhh-cCCCCchHHHHHHHHHHHhCCC--C
Confidence 432 444555556677777788888888888887777 3666662 112221 2334433333333 33333 4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 633 PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
+..+.+|...|.+++.+.+|...++.+++..|+ ...|..++.+|.+.|+.++|..++++-.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 688899999999999999999999999999998 7789999999999999999999988764
No 54
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=6.9e-07 Score=95.18 Aligned_cols=595 Identities=15% Similarity=0.134 Sum_probs=332.4
Q ss_pred HHHHhccCCCcchhHHHHHHH----------HHhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCC--CChhhHHHHH
Q 004425 64 LVKISIGSGDLKLGQAVHAFL----------LKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLV--RSAITWTSLI 131 (754)
Q Consensus 64 ll~~~~~~~~~~~a~~~~~~~----------~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li 131 (754)
.+..|.+++-+..+..+|.+. .+.|..|| |-.+|..+.+ -.++.+.++...+++ +....++.+.
T Consensus 474 AL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~ 549 (1666)
T KOG0985|consen 474 ALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIV 549 (1666)
T ss_pred HHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHH
Confidence 455555666665555555442 34566676 3345555554 556777776666643 3445566666
Q ss_pred HHHhcCCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCH
Q 004425 132 KGYLDDGDYESVLGIACDMYRSEEKFNEHTCSV-ILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCF 210 (754)
Q Consensus 132 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 210 (754)
..+........+..++-...+. ..|+.....+ +|.. -..+ |-++-+.+...+. -+.+-+..+.+.|.+.|-.
T Consensus 550 DlFme~N~iQq~TSFLLdaLK~-~~Pd~g~LQTrLLE~-NL~~----aPqVADAILgN~m-FtHyDra~IAqLCEKAGL~ 622 (1666)
T KOG0985|consen 550 DLFMELNLIQQCTSFLLDALKL-NSPDEGHLQTRLLEM-NLVH----APQVADAILGNDM-FTHYDRAEIAQLCEKAGLL 622 (1666)
T ss_pred HHHHHHHhhhhhHHHHHHHhcC-CChhhhhHHHHHHHH-Hhcc----chHHHHHHHhccc-cccccHHHHHHHHHhcchH
Confidence 6666666666666665555433 3344332222 2211 1111 1222222222221 1223366677888899999
Q ss_pred hHHHHHhccCCC--CCcchHHH----HHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHH
Q 004425 211 REAENVFRGLAY--KDVRCVNF----MILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHG 284 (754)
Q Consensus 211 ~~A~~~~~~~~~--~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 284 (754)
..|++.+..+.. +.++.-+. -+-.|...-.++.+++.++.|...+++.|..+...+..-|+..-..+...++|+
T Consensus 623 qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE 702 (1666)
T KOG0985|consen 623 QRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFE 702 (1666)
T ss_pred HHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999988887653 11111111 123455556789999999999998888888777777776666655666666666
Q ss_pred HHHHh-----------cCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC------------------------------
Q 004425 285 LAVKF-----------GVVREISVGNAIVTMYGKHGMSEEAERMFDAISE------------------------------ 323 (754)
Q Consensus 285 ~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------------ 323 (754)
..... ++..|+.+.-..|.+.++.|++.+.+++.++-.-
T Consensus 703 ~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~f 782 (1666)
T KOG0985|consen 703 SFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDF 782 (1666)
T ss_pred hhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEeccccc
Confidence 55431 3456777778889999999999999988765321
Q ss_pred -CCchhH------HHHHHHHHhcCChhHHHHHHHHhHhcCccc-----------ChhhHHHHHHHhcccCChHHHHHHHH
Q 004425 324 -RNLISW------TALISGYVRSGHGGKAINGFLEFLDLGICC-----------DSSCLATVIDGCSVCSNLELGLQLHG 385 (754)
Q Consensus 324 -~~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~ll~~~~~~~~~~~a~~~~~ 385 (754)
+|.+.| --.|..|.+.=++.+.-.+...+++....- ..+....+..-+-+.+++..-...++
T Consensus 783 VhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE 862 (1666)
T KOG0985|consen 783 VHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLE 862 (1666)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHH
Confidence 111111 123445554444333333333332221100 01112223333445555555555566
Q ss_pred HHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcC------------CCCChh-------------------hHHHHH
Q 004425 386 FAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGF------------SCKYTA-------------------EFNAIL 434 (754)
Q Consensus 386 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------------~~~~~~-------------------~~~~li 434 (754)
..+..| ..|..++|+|...|...++-.+- ++++- .++|+. .-|+|.
T Consensus 863 ~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlf 939 (1666)
T KOG0985|consen 863 SLIQEG-SQDPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLF 939 (1666)
T ss_pred HHHhcc-CcchHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHH
Confidence 666666 34566677766666543332111 00000 000000 001111
Q ss_pred H----HHhhhhcCCH---HHH--------HHHHHHHHHcCCC--CCHHHHHHHHHHHhcccchHHHHHHHHHHHHhC--C
Q 004425 435 S----GFMEKIADDE---EDV--------MVLFSQQRLAGME--PDPVTFSRLLSLSASQACLVRGRSLHAYSIKTG--Y 495 (754)
Q Consensus 435 ~----~~~~~~~~~~---~~A--------~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~ 495 (754)
. -++. ..+. ++. ..+.++....++. .|+...+..+.++...+-..+-.+++++++-.+ +
T Consensus 940 K~~aRYlv~--R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~F 1017 (1666)
T KOG0985|consen 940 KSQARYLVE--RSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVF 1017 (1666)
T ss_pred HHHHHHHHh--ccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCccc
Confidence 1 1111 1111 111 1222222222211 122222333344444444444444444433110 0
Q ss_pred CCchhHHHH---------------------------HHHHHHhcCCHHHHHHHHhccCC---------------------
Q 004425 496 AADVIVGNA---------------------------LITMYAKCGSIDGAFQIFKGISD--------------------- 527 (754)
Q Consensus 496 ~~~~~~~~~---------------------------li~~~~~~g~~~~A~~~~~~~~~--------------------- 527 (754)
.-+....|. +.......+-+++|..+|+.-..
T Consensus 1018 se~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~ef 1097 (1666)
T KOG0985|consen 1018 SENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEF 1097 (1666)
T ss_pred ccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHH
Confidence 001111111 11222333445566666654321
Q ss_pred ----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccH
Q 004425 528 ----RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEH 603 (754)
Q Consensus 528 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 603 (754)
.....|+.+..+-.+.|...+|++-|-+. -|...|..++..+++.|.|++-.+++...+++ .-.|.+++
T Consensus 1098 Ae~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id~ 1170 (1666)
T KOG0985|consen 1098 AERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYIDS 1170 (1666)
T ss_pred HHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccchH
Confidence 23357999999999999999998876432 25678999999999999999999999888874 66676654
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCc
Q 004425 604 FACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGML 683 (754)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 683 (754)
.|+-+|++.+++.|-++++. .|+..-.....+-|...|.++.|.-+|.. .+.|..|+..+...|.+
T Consensus 1171 --eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~Lgey 1236 (1666)
T KOG0985|consen 1171 --ELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEY 1236 (1666)
T ss_pred --HHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHH
Confidence 68899999999999888884 36777777888999999999988877753 45688888889999999
Q ss_pred hHHHHHHHHHhh
Q 004425 684 DEAAKVRTTMND 695 (754)
Q Consensus 684 ~~a~~~~~~m~~ 695 (754)
..|...-++...
T Consensus 1237 Q~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1237 QGAVDAARKANS 1248 (1666)
T ss_pred HHHHHHhhhccc
Confidence 988887766544
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.9e-08 Score=98.70 Aligned_cols=216 Identities=11% Similarity=0.004 Sum_probs=170.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
.|+.-.|...|+..+.....++.. |.-+...|....+.++....|+.+.+.+ +-++.+|-.-..++.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 788889999999998764333332 7777788999999999999999999876 45677888888888889999999999
Q ss_pred HhccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 004425 522 FKGISDR---DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGL 597 (754)
Q Consensus 522 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 597 (754)
|++...- ++..|-.+..+..+.+++++++..|++..++ -|+. ..|+.....+..++++++|.+.|+...+ +
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---L 491 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---L 491 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---h
Confidence 9988753 4556767777777889999999999999884 3554 6888899999999999999999999865 3
Q ss_pred CCC-------ccH--HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 598 RPI-------LEH--FACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 598 ~p~-------~~~--~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
.|+ ... .-.++-+-- .+++.+|+.++++. ...| ....+.+|...-.++|+.++|+.+|++...+.-.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 443 111 112222222 38999999999876 5666 4678899999999999999999999998887544
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.29 E-value=5.2e-07 Score=91.78 Aligned_cols=438 Identities=14% Similarity=0.143 Sum_probs=248.5
Q ss_pred HHHHhccCCCcchhHHHHHHHHHh-CCCCChhhhHHHHHHHHccCChhHHHHHhccCCCCChhhHHHHHHHHhcCCChhH
Q 004425 64 LVKISIGSGDLKLGQAVHAFLLKS-GSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYES 142 (754)
Q Consensus 64 ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 142 (754)
-+......+++-.-+..|+..+.. .+.-...+|.-.+......|-++.+.+++....+-++..-+--|.-+++.+++++
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~e 187 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDE 187 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHH
Confidence 344445667777777777766543 4455556788888888889999999999998877777778888999999999999
Q ss_pred HHHHHHHHHhCC------CCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCC--CCc--HHHHHHHHHHhHhcCCHhH
Q 004425 143 VLGIACDMYRSE------EKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGF--ENN--VFVGTSLISMYFHSGCFRE 212 (754)
Q Consensus 143 a~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~--~~~~~~li~~~~~~g~~~~ 212 (754)
|-+.+....... -+-+...|..+-...++..+.-....+ +.+++.|+ -+| ...|++|.+-|.+.|.++.
T Consensus 188 aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 188 AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 999998875432 233445566665555555444333322 23334443 234 3589999999999999999
Q ss_pred HHHHhccCCCC--CcchHHHHHHHHHHc----------------CC------hhHHHHHHHHhHHCCC-----------C
Q 004425 213 AENVFRGLAYK--DVRCVNFMILEYNKA----------------GE------SEMAFHVFVHLLSSDF-----------E 257 (754)
Q Consensus 213 A~~~~~~~~~~--~~~~~~~li~~~~~~----------------g~------~~~A~~~~~~m~~~g~-----------~ 257 (754)
|..+|++.... .+.-++.+.++|++- |+ .+-.+.-|+.+...+. .
T Consensus 267 arDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~ 346 (835)
T KOG2047|consen 267 ARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP 346 (835)
T ss_pred HHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 99999876543 233344444444332 11 1122223333322210 0
Q ss_pred CCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHhcCChHHHHHHHHccCCCCc-----
Q 004425 258 PNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVR------EISVGNAIVTMYGKHGMSEEAERMFDAISERNL----- 326 (754)
Q Consensus 258 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----- 326 (754)
-+..++..-+ -+..|+..+-...+.+.++. +.| -...|..+.+.|-..|+++.|+.+|++...-+-
T Consensus 347 ~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d 423 (835)
T KOG2047|consen 347 HNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED 423 (835)
T ss_pred ccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH
Confidence 0111111111 11234444555555555543 112 123566677777777888888888777765222
Q ss_pred --hhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 004425 327 --ISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVD 404 (754)
Q Consensus 327 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 404 (754)
.+|......-.+..+++.|++++++.... |.... +. +...+..-++ .+ .-+..+|..+++
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~----~~-~yd~~~pvQ~-rl---------hrSlkiWs~y~D 485 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE----LE-YYDNSEPVQA-RL---------HRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh----hh-hhcCCCcHHH-HH---------HHhHHHHHHHHH
Confidence 33444444445566666676666554432 22211 11 1111111110 11 113445666666
Q ss_pred HHHhCCCHHHHHHHHhcCCCCChhhHHHHHH-HHhhhhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhc---ccc
Q 004425 405 IYAKGGDLKSARMLLDGFSCKYTAEFNAILS-GFMEKIADDEEDVMVLFSQQRLAGMEPDP-VTFSRLLSLSAS---QAC 479 (754)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~~~ 479 (754)
.--..|-++....+++++.+-.+.|-..+++ +..-..+.-++++.+.|++-+..=--|+. ..|+..+..+.+ ...
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 6667788888888888877554444444443 21111155577788777765543223554 355555554432 235
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcCCHHHHHHHHhccC
Q 004425 480 LVRGRSLHAYSIKTGYAADVIVGNALITMYA----KCGSIDGAFQIFKGIS 526 (754)
Q Consensus 480 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~ 526 (754)
++.|+.+|+++++ |.+|.-. ..+.-.|+ +.|-...|..++++..
T Consensus 566 lEraRdLFEqaL~-~Cpp~~a--KtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPEHA--KTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHh-cCCHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7888888888888 6654322 22222333 3455556666666543
No 57
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=1.5e-09 Score=111.99 Aligned_cols=230 Identities=16% Similarity=0.158 Sum_probs=176.9
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHhccCC----------
Q 004425 465 VTFSRLLSLSASQACLVRGRSLHAYSIKT-----GY-AADV-IVGNALITMYAKCGSIDGAFQIFKGISD---------- 527 (754)
Q Consensus 465 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~---------- 527 (754)
.+...+...|...|+++.|..+++..++. |. .|.+ ...+.+...|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 56666888999999999999999888764 21 2222 2234577889999999999999998742
Q ss_pred CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHhC--C
Q 004425 528 RD-IVSWNAMLSAYALHGLGKGALLLFEEMKR-----EGFAPDDI--SILGVLQACIYSGLSEGGICLFNEIEQIYG--L 597 (754)
Q Consensus 528 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 597 (754)
|. ..+++.|..+|.+.|++++|..++++..+ .|..+..+ -++.+...|...+.+++|..++....+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22 24788888999999999999988887763 12222222 567778889999999999999998776443 2
Q ss_pred CCC----ccHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhcc-
Q 004425 598 RPI----LEHFACMVDLLGRAGRLSEAMNLINSS---------PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDL- 662 (754)
Q Consensus 598 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 662 (754)
.++ ..+++.|..+|...|++++|++++++. ...+ ....++.+...|.+.++.++|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 357899999999999999999999865 1122 2556788899999999999999999887653
Q ss_pred ---CCCC---cchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 663 ---EPKD---AGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 663 ---~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
.|++ ..+|..|+-+|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4544 4578999999999999999999988774
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=7e-12 Score=86.44 Aligned_cols=50 Identities=30% Similarity=0.461 Sum_probs=45.0
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc
Q 004425 223 KDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYE 272 (754)
Q Consensus 223 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 272 (754)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57889999999999999999999999999999999999999999998874
No 59
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.9e-07 Score=92.82 Aligned_cols=183 Identities=16% Similarity=0.182 Sum_probs=121.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCC-hhHHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHh
Q 004425 503 NALITMYAKCGSIDGAFQIFKGISDRD-IVSWNAMLSAY--ALHGLGKGALLLFEEMKREGFAPDD--ISILGVLQACIY 577 (754)
Q Consensus 503 ~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~ 577 (754)
+.++.+|. +..+.+.++.......- ...+.+++... ++...+.+|.+++...-+. .|.. +.....+.....
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHh
Confidence 34444444 45566777666665422 23344444332 2233578888888887763 3544 455566667888
Q ss_pred cCCHHHHHHHHH--------HHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCC-CHHHHHHHH
Q 004425 578 SGLSEGGICLFN--------EIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS--------PFSE-SPLLWRTLV 640 (754)
Q Consensus 578 ~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~ 640 (754)
.|+++.|.+++. .+.+ .+..| .+...++..+.+.++.+-|.+++.+. ...+ -...|.-+.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILE-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhh-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 999999999998 5544 34444 45667888888888765555555432 2222 244555566
Q ss_pred HHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 641 SVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 641 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
..-.++|+.++|...++++++.+|++......++.+|++. +.+.|..+-+.+
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 6667889999999999999999999999999999999876 456666665544
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1e-08 Score=95.40 Aligned_cols=267 Identities=12% Similarity=0.064 Sum_probs=136.0
Q ss_pred cCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhC-CCcc--hhHHHHHHHHHHhCCCHHHH
Q 004425 339 SGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHG-YLSD--VRLGTALVDIYAKGGDLKSA 415 (754)
Q Consensus 339 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~A 415 (754)
+.+.++|.++|-+|.+.. +-+..+-.+|-+-|.+.|..+.|++++..+.++. ...+ ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 355677777777776521 1112223344455666777777777777766532 1111 12334466667788888888
Q ss_pred HHHHhcCCCCChh---hHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhcccchHHHHHHHH
Q 004425 416 RMLLDGFSCKYTA---EFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPV----TFSRLLSLSASQACLVRGRSLHA 488 (754)
Q Consensus 416 ~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~ 488 (754)
+.+|..+.+.+.. ....|+..|-. ..++++|++.-+++...+-++..+ .|.-+...+....+++.|..++.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~--treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQA--TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 8888877653332 45566777777 778888888877777665444432 22333333333444444555554
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 004425 489 YSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISI 568 (754)
Q Consensus 489 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 568 (754)
++.+.+ +..+..--.+. +.+...|+++.|++.|+...+.+..--..+.
T Consensus 205 kAlqa~-~~cvRAsi~lG-------------------------------~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 205 KALQAD-KKCVRASIILG-------------------------------RVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred HHHhhC-ccceehhhhhh-------------------------------HHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 444432 11222222233 4444555555555555555553211112244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 004425 569 LGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLI-NSSPFSESPLLWRTLVSVS 643 (754)
Q Consensus 569 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~ 643 (754)
..|..+|.+.|+.+++..++.++.+ ..+....-..+.+......-.++|...+ +.+.-+|+...+.-|+..-
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence 4455555555555555555555533 2233333333333333333333443333 3334455555555555543
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=7.1e-08 Score=92.66 Aligned_cols=308 Identities=12% Similarity=0.010 Sum_probs=216.4
Q ss_pred ccChhhHHHHHHHhc--ccCChHHHHHHHHHHHH-hCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHH
Q 004425 358 CCDSSCLATVIDGCS--VCSNLELGLQLHGFAIK-HGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAIL 434 (754)
Q Consensus 358 ~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 434 (754)
.|...+....+.+++ -.++...+...+-.+.. .-++.++.....+.+.+...|+..+|...|++...-|+.+...|=
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 344444444555543 34555555555555554 446778889999999999999999999999988766665554442
Q ss_pred H-HHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 004425 435 S-GFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCG 513 (754)
Q Consensus 435 ~-~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 513 (754)
. ++.-...|+.++...+...+.... +-....|-.-....-...+++.|..+-++.++.+ +.++..+-.-..++...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence 1 222222888888888887776532 1222333333444456678888888888877654 233444444456778889
Q ss_pred CHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHH
Q 004425 514 SIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVL-QACI-YSGLSEGGICLF 588 (754)
Q Consensus 514 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~ 588 (754)
+.++|.-.|+.... -+..+|..|+.+|...|++.+|..+-+..... +..+..++..+. ..|. ....-++|.+++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 99999999987653 46789999999999999999998887776652 223444554442 3333 223347888888
Q ss_pred HHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC
Q 004425 589 NEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD 666 (754)
Q Consensus 589 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 666 (754)
++. ..+.|+ ......+..++.+.|+.++++.++++. ...||....+.|.+.++..+.+.+|...|..++.++|++
T Consensus 428 ek~---L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 428 EKS---LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hhh---hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 877 446676 346678888999999999999999865 567899999999999999999999999999999999997
Q ss_pred cchHH
Q 004425 667 AGSFI 671 (754)
Q Consensus 667 ~~~~~ 671 (754)
..+..
T Consensus 505 ~~sl~ 509 (564)
T KOG1174|consen 505 KRTLR 509 (564)
T ss_pred hHHHH
Confidence 65443
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.26 E-value=1.9e-08 Score=96.66 Aligned_cols=285 Identities=10% Similarity=0.024 Sum_probs=166.6
Q ss_pred cCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHH
Q 004425 238 AGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERM 317 (754)
Q Consensus 238 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 317 (754)
.|++.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+..++.+..+.--.++..++-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577888888877766665432 3346666677777888888888888877765566667777777777888888888776
Q ss_pred HHccCC---CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCc
Q 004425 318 FDAISE---RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLS 394 (754)
Q Consensus 318 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 394 (754)
.+++.+ ++.........+|.+.|++.....++.+|.+.|+--|...- + .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~-----------l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------R-----------L 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------H-----------H
Confidence 665543 56777788888888888888888888888887764443210 0 0
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004425 395 DVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLL 471 (754)
Q Consensus 395 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 471 (754)
...++..+++-....+..+.-...++..+ ..++..-.+++.-+.+ .|+.++|.++..+-.+.+..|+..+ +
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~--l~~~~~A~~~i~~~Lk~~~D~~L~~----~ 301 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR--LGDHDEAQEIIEDALKRQWDPRLCR----L 301 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH--cCChHHHHHHHHHHHHhccChhHHH----H
Confidence 01122333333333333333333333333 2233334444444555 6666666666666666655555221 2
Q ss_pred HHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC--CCChhHHHHHHHHHHHcCChHHH
Q 004425 472 SLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGIS--DRDIVSWNAMLSAYALHGLGKGA 549 (754)
Q Consensus 472 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 549 (754)
-.+.+.++...-.+..+...+. .+.++..+.+|...|.+.+.|.+|...|+... +++..+|+.+..+|.+.|+..+|
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 2344445554444444444332 12333555566666666666666666666443 35555666666666666666666
Q ss_pred HHHHHHHHH
Q 004425 550 LLLFEEMKR 558 (754)
Q Consensus 550 ~~~~~~m~~ 558 (754)
.+++++.+.
T Consensus 381 ~~~r~e~L~ 389 (400)
T COG3071 381 EQVRREALL 389 (400)
T ss_pred HHHHHHHHH
Confidence 666555543
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.26 E-value=1.5e-09 Score=118.08 Aligned_cols=244 Identities=11% Similarity=0.017 Sum_probs=181.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHh---------cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 004425 443 DDEEDVMVLFSQQRLAGMEPDPV-TFSRLLSLSA---------SQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKC 512 (754)
Q Consensus 443 ~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 512 (754)
+..++|+.+|++..+. .|+.. .|..+..++. ..+++++|...++++.+.+ +-+...+..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 4567888888888765 56553 3443333332 3345789999999998875 45677888888899999
Q ss_pred CCHHHHHHHHhccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 004425 513 GSIDGAFQIFKGISD--R-DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLF 588 (754)
Q Consensus 513 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 588 (754)
|++++|...|++..+ | +...|..+...+...|++++|+..+++.++ +.|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999998754 4 356788899999999999999999999999 567653 3334455577789999999999
Q ss_pred HHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 589 NEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 589 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
+++... ..|+ ...+..+..+|...|+.++|.+.++++ +..|+ ...++.+...+...| +.|...++++++..-.
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 998762 2343 445778889999999999999999886 34454 455566666666666 4788888887775433
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 666 DAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 666 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
.+.....+..+|.-.|+-+.+..+ +++.+.
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 333444588889999999998888 766554
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=8.1e-09 Score=95.99 Aligned_cols=299 Identities=11% Similarity=0.075 Sum_probs=195.7
Q ss_pred CCHHHHHHHHhcCCCCChhhHH---HHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhcccch
Q 004425 410 GDLKSARMLLDGFSCKYTAEFN---AILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP------VTFSRLLSLSASQACL 480 (754)
Q Consensus 410 g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~ 480 (754)
.+.++|.+.|-+|.+.|..++. +|.+-|-+ .|..+.|+++-+.+.++ ||. ...-.|..-|...|-+
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRs--RGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRS--RGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHh--cchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 3444444444444433333322 23333444 55555555555555442 222 1222334445556666
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCh--------hHHHHHHHHHHHcCChHHHHHH
Q 004425 481 VRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDI--------VSWNAMLSAYALHGLGKGALLL 552 (754)
Q Consensus 481 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~ 552 (754)
+.|+.+|..+.+.+ ..-......|+..|-+..+|++|.++-+++.+-+. ..|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 66666666666533 12233445677777777778777777766543221 2455677777778899999999
Q ss_pred HHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 004425 553 FEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFS 630 (754)
Q Consensus 553 ~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 630 (754)
+.+..+ ..|+.+ .-..+.+.....|+++.|++.++.+.+ .+..--.++...|..+|...|+.++...++.++ ...
T Consensus 203 l~kAlq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 203 LKKALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999998 456655 334556678899999999999999987 344444677889999999999999999999765 455
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH--hcCCchHHHHHHHHHhhCCCccCCceeEEE
Q 004425 631 ESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYA--GQGMLDEAAKVRTTMNDLRLSKEAGCSWIE 708 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~ 708 (754)
+.+..-..+........-.+.|...+.+-+...|.--..|..+.--.. ..|++.+.....+.|....++..|.+..-.
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~ 359 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQN 359 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecc
Confidence 566666666666666666778888888888899984444444433333 446799999999999888888777665555
Q ss_pred ECCEEEEEe
Q 004425 709 IDSKLHHFV 717 (754)
Q Consensus 709 ~~~~~~~~~ 717 (754)
.+=..|.|.
T Consensus 360 CGF~a~~l~ 368 (389)
T COG2956 360 CGFTAHTLY 368 (389)
T ss_pred cCCcceeee
Confidence 555666665
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.2e-08 Score=99.14 Aligned_cols=472 Identities=12% Similarity=0.025 Sum_probs=218.2
Q ss_pred cHHHHHHHhccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhcc--CCCCChhhHHHHHHHHhcC
Q 004425 60 DWPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDG--MLVRSAITWTSLIKGYLDD 137 (754)
Q Consensus 60 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~ 137 (754)
-+..+++-+....+++.|.-+-+.+...+..|+. ---+.++|.-.|.++.|..+... +.+.|..+......++.+.
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 3556666677777788888777777766644443 33466777778888888777654 5677899999999999999
Q ss_pred CChhHHHHHHHHHHh--CCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHH
Q 004425 138 GDYESVLGIACDMYR--SEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAEN 215 (754)
Q Consensus 138 ~~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 215 (754)
.+|++|+.++..-.. .++.-+..+- +. .-+.+.+.... ++.....++-.--..|....+.++|..
T Consensus 96 k~~~~al~vl~~~~~~~~~f~yy~~~~-----~~--~l~~n~~~~~~------~~~~essic~lRgk~y~al~n~~~ar~ 162 (611)
T KOG1173|consen 96 KEWDQALLVLGRGHVETNPFSYYEKDA-----AN--TLELNSAGEDL------MINLESSICYLRGKVYVALDNREEARD 162 (611)
T ss_pred HHHHHHHHHhcccchhhcchhhcchhh-----hc--eeccCcccccc------cccchhceeeeeeehhhhhccHHHHHH
Confidence 999999998883210 0000010000 00 00000000000 000000000001122333344555555
Q ss_pred HhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCC----CCcchHHHHHHHH-hccCCchHHHHHHHHHHHhc
Q 004425 216 VFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFE----PNDYTFTNVISVC-YENLGVEEGKQLHGLAVKFG 290 (754)
Q Consensus 216 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~~g 290 (754)
.|.+....|+..+.++..--... .-.+.+.|+.+...... -+......+.... ++..+.+ ....-.+..-.|
T Consensus 163 ~Y~~Al~~D~~c~Ea~~~lvs~~--mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~-~~~r~~~~sl~~ 239 (611)
T KOG1173|consen 163 KYKEALLADAKCFEAFEKLVSAH--MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEE-SLTRNEDESLIG 239 (611)
T ss_pred HHHHHHhcchhhHHHHHHHHHHH--hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccc-ccccCchhhhhh
Confidence 55554444444443332211110 11111111111111000 0111111111100 0000000 000000000011
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHH
Q 004425 291 VVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDG 370 (754)
Q Consensus 291 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 370 (754)
..-+..+...-. .-+...+++.+..++++...+. .++....+..-|..
T Consensus 240 l~~~~dll~~~a-------------------------------d~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~ 287 (611)
T KOG1173|consen 240 LAENLDLLAEKA-------------------------------DRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIAC 287 (611)
T ss_pred hhhcHHHHHHHH-------------------------------HHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHH
Confidence 122222223333 3344445555555555555443 12233333333334
Q ss_pred hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHH
Q 004425 371 CSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEED 447 (754)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~ 447 (754)
+...|+..+-..+=..+++. .+....+|-++.--|...|+..+|++.|.+.. ..-...|-.+..+|+. .+..++
T Consensus 288 l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~--e~EhdQ 364 (611)
T KOG1173|consen 288 LYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG--EGEHDQ 364 (611)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh--cchHHH
Confidence 44444433333333333332 23445566666666666677777777776554 3334467777778887 888888
Q ss_pred HHHHHHHHHHc--CC-CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 004425 448 VMVLFSQQRLA--GM-EPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKG 524 (754)
Q Consensus 448 A~~~~~~m~~~--g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 524 (754)
|+..+...-+. |. .|. --+.--|.+.++.+.|.+++.++.... +.|+.+.+-+.-.....+.+.+|..+|+.
T Consensus 365 AmaaY~tAarl~~G~hlP~----LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~ 439 (611)
T KOG1173|consen 365 AMAAYFTAARLMPGCHLPS----LYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQK 439 (611)
T ss_pred HHHHHHHHHHhccCCcchH----HHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHH
Confidence 88777665542 21 121 122334566677777777777666532 44566666655555555666666666654
Q ss_pred cCC------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004425 525 ISD------R----DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEI 591 (754)
Q Consensus 525 ~~~------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 591 (754)
... + -..+++.|..+|.+.+.+++|+..+++.+. ..| |..++.++.-.+...|+++.|+..|.+.
T Consensus 440 ~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 440 ALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 421 0 112334444444444444444444444444 222 2234444444444444444444444444
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.2e-11 Score=83.94 Aligned_cols=50 Identities=32% Similarity=0.521 Sum_probs=47.4
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004425 528 RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIY 577 (754)
Q Consensus 528 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 577 (754)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=2.7e-07 Score=96.10 Aligned_cols=445 Identities=14% Similarity=0.071 Sum_probs=232.8
Q ss_pred HHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCC---CcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchH
Q 004425 187 KSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYK---DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTF 263 (754)
Q Consensus 187 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 263 (754)
...+..|..+|..|.-+..++|+++.+.+.|++...- ....|+.+-..+...|.-..|+.++++-....-.|+..+-
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3446778899999999999999999999999876643 4557899999999999999999999886654434555554
Q ss_pred HHHHHH-Hh-ccCCchHHHHHHHHHHHhc--CC--CChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHH
Q 004425 264 TNVISV-CY-ENLGVEEGKQLHGLAVKFG--VV--REISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYV 337 (754)
Q Consensus 264 ~~ll~~-~~-~~~~~~~a~~~~~~~~~~g--~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 337 (754)
..++.. |. +.+.++++..+-...+... .. .....|-.+.-+|...-. +.+. +. -
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~--~s------e 455 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANL--KS------E 455 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCC--hH------H
Confidence 444433 33 3456666666666555521 11 112222222222221100 0000 00 0
Q ss_pred hcCChhHHHHHHHHhHhcC-cccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHH
Q 004425 338 RSGHGGKAINGFLEFLDLG-ICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSAR 416 (754)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 416 (754)
+.....++++.+++..+.+ -.|+...|.++ -++..++++.|.+..++..+.+-..+...+.-|.-.+...+++.+|+
T Consensus 456 R~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 456 RDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHH
Confidence 0111234555555554432 22333333222 23445566666666666666555556666666666666666666666
Q ss_pred HHHhcCCCCChhhHHHHH-HHHhhhhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHh
Q 004425 417 MLLDGFSCKYTAEFNAIL-SGFMEKIADDEEDVMVLFSQQRLA--GMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKT 493 (754)
Q Consensus 417 ~~~~~~~~~~~~~~~~li-~~~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 493 (754)
.+.+.....-...++.|. .......-++.++++.....+..- ...+= ...++-....+....+.-.
T Consensus 534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~-----------q~~~~~g~~~~lk~~l~la 602 (799)
T KOG4162|consen 534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGV-----------QQTLDEGKLLRLKAGLHLA 602 (799)
T ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH-----------hhhhhhhhhhhhhcccccC
Confidence 665543311111111110 011110145555555555544431 00000 0000000000000000000
Q ss_pred --CCCCchhHHHHHHHHHHhc---CCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 004425 494 --GYAADVIVGNALITMYAKC---GSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISI 568 (754)
Q Consensus 494 --~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 568 (754)
...-.+.++..+....... -..+..+..+.....|+. +|..+ ...|
T Consensus 603 ~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~-~~~~~----------------------------~~lw 653 (799)
T KOG4162|consen 603 LSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDS-LWYLL----------------------------QKLW 653 (799)
T ss_pred cccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCc-hHHHH----------------------------HHHH
Confidence 0000111111111111100 000011111111111221 11111 1123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHh
Q 004425 569 LGVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFACMVDLLGRAGRLSEAMNLINS-SPFSE-SPLLWRTLVSVSKL 645 (754)
Q Consensus 569 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~ 645 (754)
......+.+.+..++|...+.+... +.| ....|......+...|.++||.+.|.. ....| ++.+..++...+..
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 3444455566666666666655533 223 234556666777778888888877654 35566 47777888888888
Q ss_pred cCChHHHHH--HHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 646 MANSKFSIL--ASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 646 ~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
.|+...|.. ++..+++++|.++.+|..||.++...|+.++|.+.|+...+.
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 888888888 899999999999999999999999999999999998877553
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.23 E-value=1e-07 Score=99.18 Aligned_cols=384 Identities=13% Similarity=0.029 Sum_probs=218.3
Q ss_pred HHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC---CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhh
Q 004425 287 VKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE---RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSC 363 (754)
Q Consensus 287 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 363 (754)
....+.-|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-....-.|+..+
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 3344567888999999999999999999999998764 4557899999999999999999999988765543354443
Q ss_pred HHHHH-HHhc-ccCChHHHHHHHHHHHHh--CC--CcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004425 364 LATVI-DGCS-VCSNLELGLQLHGFAIKH--GY--LSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGF 437 (754)
Q Consensus 364 ~~~ll-~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 437 (754)
--.+. ..|. +.+.++++..+-.+++.. +. ......|-.+.-+|...-.. .+ ++. .
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~------------a~--~~s-e---- 455 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ------------AN--LKS-E---- 455 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc------------CC--ChH-H----
Confidence 33333 3343 347777777777776662 11 11223333333333321100 00 000 0
Q ss_pred hhhhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 004425 438 MEKIADDEEDVMVLFSQQRLAG-MEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSID 516 (754)
Q Consensus 438 ~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 516 (754)
+ .....++++.+++..+.+ -.|+...|.+ --++..++++.|.+...+..+.+-..+...|..|.-.+...+++.
T Consensus 456 -R--~~~h~kslqale~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 456 -R--DALHKKSLQALEEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred -H--HHHHHHHHHHHHHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 0 111234455555554432 2233222222 224455566666666666666554556666666666666666666
Q ss_pred HHHHHHhccCCCChhHHH---HHHHHHHHcCChHHHHHHHHHHH---------------------HcCC-----CC-CH-
Q 004425 517 GAFQIFKGISDRDIVSWN---AMLSAYALHGLGKGALLLFEEMK---------------------REGF-----AP-DD- 565 (754)
Q Consensus 517 ~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~---------------------~~g~-----~p-~~- 565 (754)
+|+.+.+.....-...++ .-+..-..-|+.++|+.+...++ +.|+ .| |.
T Consensus 531 ~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 531 EALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccc
Confidence 666666544321000000 00000111233333322221111 0010 11 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc--------cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 004425 566 ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL--------EHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLL 635 (754)
Q Consensus 566 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 635 (754)
.++..+..-.... ...+..-.. +.. ....|.. ..|....+.+.+.++.++|.-.+.+. ...| ....
T Consensus 611 s~sr~ls~l~a~~--~~~~~se~~-Lp~-s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~ 686 (799)
T KOG4162|consen 611 STSRYLSSLVASQ--LKSAGSELK-LPS-STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASV 686 (799)
T ss_pred hhhHHHHHHHHhh--hhhcccccc-cCc-ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHH
Confidence 2343333322211 111110000 222 2333433 24667888889999999998776654 3344 5667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHH--HHHHHhhCCC
Q 004425 636 WRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAK--VRTTMNDLRL 698 (754)
Q Consensus 636 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~~ 698 (754)
|.-........|+.++|.+.|..++.++|++......++.++.+.|+-.-|.. +...+.+.+.
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 77777778889999999999999999999999999999999999998776666 7777765444
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=2e-09 Score=107.04 Aligned_cols=212 Identities=15% Similarity=0.026 Sum_probs=149.7
Q ss_pred cchHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHH
Q 004425 478 ACLVRGRSLHAYSIKTG-YAA--DVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALL 551 (754)
Q Consensus 478 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 551 (754)
+..+.+..-+.+++... ..| ....|..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 44556666666666432 222 245577778889999999999999988754 356789999999999999999999
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC--C
Q 004425 552 LFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS--P 628 (754)
Q Consensus 552 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 628 (754)
.|++.++ +.|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 66765 5778888888999999999999999865 3454332222233345677899999999654 2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh-------ccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 629 FSESPLLWRTLVSVSKLMANSKFSILASKRLL-------DLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 629 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
..|+ .|. ........|+...+ ..++.+. ++.|+.+.+|..+|.+|...|++++|...|++..+..+
T Consensus 195 ~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2233 333 12222335555443 2333333 45666778999999999999999999999998766443
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.9e-09 Score=99.94 Aligned_cols=225 Identities=11% Similarity=0.097 Sum_probs=131.5
Q ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 004425 433 ILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKC 512 (754)
Q Consensus 433 li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 512 (754)
|...|.+ .|.+.+|.+.|+.-... .|-..||..|-++|.+......|+.++.+-++. ++.|+....-+...+...
T Consensus 229 ~gkCylr--Lgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 229 MGKCYLR--LGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHH--hcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 3344444 55555555555444443 333444444444444444444444444444332 122222223334444444
Q ss_pred CCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004425 513 GSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFN 589 (754)
Q Consensus 513 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 589 (754)
++.++|.++|+...+ .++.+.-.+..+|.-.++.+-|+.+|+++++.|+. +...|+.+.-+|.-.+.+|-++..|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 555555555554433 12223333444445555555555555555555543 34445555555555555555555554
Q ss_pred HHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 590 EIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSE--SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 590 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
+.... + ..| -..+|-.|.......||+..|.+.++-++.-+|++.
T Consensus 383 RAlst--------------------------------a-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 383 RALST--------------------------------A-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHhh--------------------------------c-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 44331 1 112 256788888888888999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 668 GSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+++++|+-+-.+.|+.++|..+++..++.
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999999999999999999999987663
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.19 E-value=2.4e-09 Score=94.96 Aligned_cols=161 Identities=14% Similarity=0.017 Sum_probs=139.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHHHHHHH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFACMVDL 610 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 610 (754)
...|.-+|...|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|++... +.| +.++.|.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 44577789999999999999999998 567664 888888899999999999999999865 445 46789999999
Q ss_pred HhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHH
Q 004425 611 LGRAGRLSEAMNLINSSPFSE----SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEA 686 (754)
Q Consensus 611 ~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 686 (754)
+|..|++++|...|++.-..| -+.+|..+..+..+.|+.+.|...+++.++++|+.+.....+++.....|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999998764344 2668888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 004425 687 AKVRTTMNDLRL 698 (754)
Q Consensus 687 ~~~~~~m~~~~~ 698 (754)
...++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998877665
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.16 E-value=5.3e-09 Score=113.87 Aligned_cols=210 Identities=13% Similarity=0.052 Sum_probs=165.3
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCC
Q 004425 478 ACLVRGRSLHAYSIKTGYAADVIVGNALITMYAK---------CGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGL 545 (754)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 545 (754)
+++++|...++++.+.. +-+...+..+..+|.. .+++++|...+++..+ .+..+|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678999999988764 2345556666555442 3458999999998865 356788888889999999
Q ss_pred hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHhhcCCHHHHHHH
Q 004425 546 GKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL-EHFACMVDLLGRAGRLSEAMNL 623 (754)
Q Consensus 546 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 623 (754)
+++|+..|++.++ +.|+. ..+..+..++...|++++|...++++.+ +.|+. ..+..++..+...|++++|++.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 56765 4778888899999999999999999966 45553 2333445567778999999999
Q ss_pred HHhCC--CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 624 INSSP--FSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 624 ~~~~~--~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+++.. ..| ++..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 98762 235 46667788888889999999999999999999998888889999999888 488887777654
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=3.8e-08 Score=92.49 Aligned_cols=364 Identities=12% Similarity=0.036 Sum_probs=152.9
Q ss_pred HHHhHhcCCHhHHHHHhccCCCC---CcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHH-HHHHHHhccCCc
Q 004425 201 ISMYFHSGCFREAENVFRGLAYK---DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFT-NVISVCYENLGV 276 (754)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~ 276 (754)
..+|.+.|++++|...+.-+.+. +...|--+.-.+.-.|.+.+|..+-... |+..... .|....-+.++-
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcH
Confidence 34455556666666655443322 2333333333344445555555443332 2222222 233333344555
Q ss_pred hHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC--CCchhHHH-HHHHHHhcCChhHHHHHHHHhH
Q 004425 277 EEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE--RNLISWTA-LISGYVRSGHGGKAINGFLEFL 353 (754)
Q Consensus 277 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~ 353 (754)
++-..++..+...- .---+|.......-.+.+|++++.++.. |+-...|. +.-+|.+..-++-+.+++.--+
T Consensus 138 k~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 138 KRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 55444444443221 1112333333334456777777777654 33344443 3335556666665555555444
Q ss_pred hcCcccCh-hhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhC-----CCHHHHHHHHhcCCCCCh
Q 004425 354 DLGICCDS-SCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKG-----GDLKSARMLLDGFSCKYT 427 (754)
Q Consensus 354 ~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~ 427 (754)
+. .||. ...|.......+.=+-..|++-.+.+.+.+-.. -..+.-.++. ..-+.|..++-.+...=+
T Consensus 213 ~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP 285 (557)
T KOG3785|consen 213 RQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP 285 (557)
T ss_pred Hh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhCh
Confidence 32 2332 222222222222211122222222222222111 0011111111 122334444332222212
Q ss_pred hhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HhcccchHHHHHHHHHHHHhCCCCchhH-
Q 004425 428 AEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSL-----SASQACLVRGRSLHAYSIKTGYAADVIV- 501 (754)
Q Consensus 428 ~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 501 (754)
..--.|+--|.+ .++..+|..+.+++.- ..|-......+..+ ..+...+.-|.+.++..-..+...|...
T Consensus 286 EARlNL~iYyL~--q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpG 361 (557)
T KOG3785|consen 286 EARLNLIIYYLN--QNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPG 361 (557)
T ss_pred Hhhhhheeeecc--cccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccc
Confidence 222334445666 7777777777665531 13333222222221 1222234445555555555544433322
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHH
Q 004425 502 GNALITMYAKCGSIDGAFQIFKGISD----RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGV-LQACI 576 (754)
Q Consensus 502 ~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~ 576 (754)
-.++...+.-..++++.+..++.+.. .|...+| +..+++..|.+.+|.++|-+.....++ |..+|..+ ..+|.
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYI 439 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHH
Confidence 22333444444455555555555432 2333332 455566666666666666554433333 33333333 33455
Q ss_pred hcCCHHHHHHHH
Q 004425 577 YSGLSEGGICLF 588 (754)
Q Consensus 577 ~~g~~~~a~~~~ 588 (754)
+.+..+.|+.++
T Consensus 440 ~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 440 RNKKPQLAWDMM 451 (557)
T ss_pred hcCCchHHHHHH
Confidence 555555555554
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.14 E-value=1.4e-08 Score=98.18 Aligned_cols=193 Identities=13% Similarity=0.083 Sum_probs=106.1
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcC
Q 004425 468 SRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHG 544 (754)
Q Consensus 468 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 544 (754)
..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...+..+...+...|
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG 113 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 333344444444444444444444332 22334444555555555666666555554432 23345555566666666
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHH
Q 004425 545 LGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNL 623 (754)
Q Consensus 545 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 623 (754)
++++|.+.+++..+....|. ...+..+..++...|++++|...+++.... .+.+...+..+...+...|++++|.+.
T Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666665322222 234555556666667777777777666541 222344566666677777777777766
Q ss_pred HHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Q 004425 624 INSS-P-FSESPLLWRTLVSVSKLMANSKFSILASKRLLDLE 663 (754)
Q Consensus 624 ~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 663 (754)
+++. . .+.++..+..+...+...|+.+.|....+.+.+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 192 LERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 6654 1 12245555566666667777777777766665543
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=5e-08 Score=100.92 Aligned_cols=129 Identities=11% Similarity=0.066 Sum_probs=90.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH---cCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---CC--CCC
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKR---EGFAPDD----ISILGVLQACIYSGLSEGGICLFNEIEQIY---GL--RPI 600 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~--~p~ 600 (754)
++.++..+...+++++|..+++...+ .-+.++. .+++.+...|.+.|++++|.++|+++.... +. .+.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 44566666777777777777766553 1123333 367788888888888888888888776632 11 122
Q ss_pred -ccHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhc
Q 004425 601 -LEHFACMVDLLGRAGRLSEAMNLINSS--------PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLD 661 (754)
Q Consensus 601 -~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 661 (754)
..+++.|...|.+.++..+|.++|.+. +..|+ ..++..|...|...|+++.|+++.+++..
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 346777888888888888887777643 34454 66888999999999999999999888773
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=2e-06 Score=86.97 Aligned_cols=369 Identities=13% Similarity=0.101 Sum_probs=196.1
Q ss_pred HHhH--hcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHH
Q 004425 202 SMYF--HSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEG 279 (754)
Q Consensus 202 ~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 279 (754)
.+|| +.+..|+|...++...+.+..+...-...+-+.|++++|+++|+.+.+.+.. .+..-+++-+. ..+
T Consensus 85 KAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~----a~~ 156 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLL----AVA 156 (652)
T ss_pred HHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHH----HHH
Confidence 4444 5677888888887555555555555666777888888888888888766432 22222211100 000
Q ss_pred HHHH-HHHHHhcCCCChhHHHHHH---HHHHhcCChHHHHHHHHcc--------CCCCc----------hhHHHHHHHHH
Q 004425 280 KQLH-GLAVKFGVVREISVGNAIV---TMYGKHGMSEEAERMFDAI--------SERNL----------ISWTALISGYV 337 (754)
Q Consensus 280 ~~~~-~~~~~~g~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~--------~~~~~----------~~~~~li~~~~ 337 (754)
...- +.+......| ..+|..+. ..+...|++..|+++++.. .+.|. ..---|.-.+.
T Consensus 157 a~l~~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 157 AALQVQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred HhhhHHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 0000 1122222222 22333333 3455678888888888776 11111 11122344567
Q ss_pred hcCChhHHHHHHHHhHhcCcccChh----hHHHHHHHhcccCChHH--HHHHHHHH-----------HHhCCCcchhHHH
Q 004425 338 RSGHGGKAINGFLEFLDLGICCDSS----CLATVIDGCSVCSNLEL--GLQLHGFA-----------IKHGYLSDVRLGT 400 (754)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~--a~~~~~~~-----------~~~g~~~~~~~~~ 400 (754)
..|+.++|..++...+.... +|.. .-|.++ +...-.++-. ....++.. ....-.-...--+
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999998887642 3332 122222 2222222111 11111111 1111011112223
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCCC-hhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcc
Q 004425 401 ALVDIYAKGGDLKSARMLLDGFSCKY-TAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP--VTFSRLLSLSASQ 477 (754)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~ 477 (754)
.++.+| .+..+.++++....+... ...+..++....+.......++.+++...-+. .|.. ...-..+......
T Consensus 314 ~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 314 ALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhc
Confidence 344444 356667777777776443 34555555544432233567777777776654 3444 3444555667788
Q ss_pred cchHHHHHHHH--------HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC------CChh----HHHHHHHH
Q 004425 478 ACLVRGRSLHA--------YSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD------RDIV----SWNAMLSA 539 (754)
Q Consensus 478 ~~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~----~~~~li~~ 539 (754)
|+++.|.+++. .+.+.+.. +.+..+++..|.+.++-+.|..++.+... .... .|.-...-
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 88988888888 44444433 34456677778887777766666665421 1112 23333333
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFN 589 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 589 (754)
-.++|+.++|..+++++.+.. ++|..+...++.+|++. +++.|..+-+
T Consensus 468 ~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 445677777777777777621 23445666777777665 4555555543
No 77
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.12 E-value=1.2e-06 Score=90.29 Aligned_cols=493 Identities=15% Similarity=0.122 Sum_probs=290.6
Q ss_pred ccCChhHHHHHhccCC-CCC-hhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHH
Q 004425 105 KFNRLDVAQKLFDGML-VRS-AITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIH 182 (754)
Q Consensus 105 ~~~~~~~A~~~~~~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 182 (754)
..|+++.|..+++... .|+ ...|-.+...-...|+.--|.++|..+ |++.+++.++
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai----------------------~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI----------------------GDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH----------------------HHHHHHHHHH
Confidence 3466677766666542 233 234555555555666655555555443 5666666666
Q ss_pred HHHHH-------HC-CCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHC
Q 004425 183 AFAIK-------SG-FENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSS 254 (754)
Q Consensus 183 ~~m~~-------~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 254 (754)
+...- -| -..+-+-..+++..+. .++.+|..+|-+-. .-...|..|-...++++|+.+-+. .
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~---~ 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEA---K 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHh---c
Confidence 54432 12 2223333344444443 35777877774321 112334455555566666665432 1
Q ss_pred CCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHcc--CCCCchhHHHH
Q 004425 255 DFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAI--SERNLISWTAL 332 (754)
Q Consensus 255 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l 332 (754)
|.+.-...-.+-+.++...|+-++|-++- .+.----+-|..|.+.|.+..|.+.-..- ...|......+
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 21111112233445555556555554331 11111234577888888888876654322 22455556666
Q ss_pred HHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhH-HHHHHHHHHhCCC
Q 004425 333 ISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRL-GTALVDIYAKGGD 411 (754)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~ 411 (754)
..++.+..-+++|-++|+++.. +...+..+.+..-+-+|.++-+.. ++..+.. -.....-+...|+
T Consensus 655 a~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHh
Confidence 6677777777777777776643 122233333333344444433322 1111111 1233344556677
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 004425 412 LKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSI 491 (754)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 491 (754)
++.|..-|-+... .---|.+-.. ...+.+|+.+++.++... .-..-|..+...|++.|+++.|.++|-+.-
T Consensus 722 ~daainhfiea~~-----~~kaieaai~--akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~ 792 (1636)
T KOG3616|consen 722 LDAAINHFIEANC-----LIKAIEAAIG--AKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD 792 (1636)
T ss_pred HHHHHHHHHHhhh-----HHHHHHHHhh--hhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc
Confidence 7777766643210 1112334455 788999999999888763 333456777888999999999999886542
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004425 492 KTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRD--IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISIL 569 (754)
Q Consensus 492 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 569 (754)
.++--|++|.+.|+|+.|.++-++...|. +..|-+-..-+-++|++.+|.++|-.... |+.
T Consensus 793 ---------~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~---- 855 (1636)
T KOG3616|consen 793 ---------LFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK---- 855 (1636)
T ss_pred ---------hhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH----
Confidence 34567899999999999999988876553 44566666777889999999988765432 543
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 004425 570 GVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANS 649 (754)
Q Consensus 570 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 649 (754)
.|..|-+.|..+..+++.++--- ..-.++...+..-|...|++.+|++-|-+.+ -|.+-++.|+..+-+
T Consensus 856 -aiqmydk~~~~ddmirlv~k~h~----d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw 924 (1636)
T KOG3616|consen 856 -AIQMYDKHGLDDDMIRLVEKHHG----DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELW 924 (1636)
T ss_pred -HHHHHHhhCcchHHHHHHHHhCh----hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhH
Confidence 46678888888888877765421 1113455677888889999999998876654 377788888888888
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 650 KFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 650 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
++|-++.+. ... .......+.+.+++=--+.|.+++.+.
T Consensus 925 ~dayriakt---egg--~n~~k~v~flwaksiggdaavkllnk~ 963 (1636)
T KOG3616|consen 925 EDAYRIAKT---EGG--ANAEKHVAFLWAKSIGGDAAVKLLNKH 963 (1636)
T ss_pred HHHHHHHhc---ccc--ccHHHHHHHHHHHhhCcHHHHHHHHhh
Confidence 877766542 122 233444555555554556788887764
No 78
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=8.4e-06 Score=87.24 Aligned_cols=562 Identities=11% Similarity=0.069 Sum_probs=286.0
Q ss_pred hHHHHHHHHccCChhHHHHHhccCC--CCChhh-----HHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004425 96 ANNLINLYAKFNRLDVAQKLFDGML--VRSAIT-----WTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEA 168 (754)
Q Consensus 96 ~~~li~~~~~~~~~~~A~~~~~~~~--~~~~~~-----~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 168 (754)
+..+-+.|.+.|-...|++.+..+. ++.++. =..++ .|.-.-.++.+++++..|...+++-|..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4556667778888888888887763 221111 11222 334445678889999999888887777666665555
Q ss_pred hccCCChHHHHHHHHHHHHH-----------CCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCC---------------
Q 004425 169 CSLLEDRIFGEQIHAFAIKS-----------GFENNVFVGTSLISMYFHSGCFREAENVFRGLAY--------------- 222 (754)
Q Consensus 169 ~~~~~~~~~a~~~~~~m~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------- 222 (754)
|...=-.+...++|+..+.. ++..|+.+.-..|.+.|+.|.+.+.+++.++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 54443344444444443321 3466777778889999999999998888765420
Q ss_pred ----C------------CcchH------HHHHHHHHHcCC----------------------------------------
Q 004425 223 ----K------------DVRCV------NFMILEYNKAGE---------------------------------------- 240 (754)
Q Consensus 223 ----~------------~~~~~------~~li~~~~~~g~---------------------------------------- 240 (754)
| |.+.| --.|..|++.=+
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 0 11111 012333333221
Q ss_pred ------hhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHH----------HHHHHHHH-----------hc---
Q 004425 241 ------SEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGK----------QLHGLAVK-----------FG--- 290 (754)
Q Consensus 241 ------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~----------~~~~~~~~-----------~g--- 290 (754)
..--+..++...+.|.. |..|+++|.+.|...++--+-. .+=+...+ +|
T Consensus 848 vEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 11122223333334443 5556666555544333211100 00000000 01
Q ss_pred -----CCCChhHHHHHHHHHHhcCChHHHHHHHHc-----------cC------CCCchhHHHHHHHHHhcCChhHHHHH
Q 004425 291 -----VVREISVGNAIVTMYGKHGMSEEAERMFDA-----------IS------ERNLISWTALISGYVRSGHGGKAING 348 (754)
Q Consensus 291 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----------~~------~~~~~~~~~li~~~~~~g~~~~A~~~ 348 (754)
+.-....|..+.+.+.+..+.+.-.+++.+ .. ..|...-+.-++++...+-+.+-+++
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 001112223333333334444333333321 10 13445556667888888888888888
Q ss_pred HHHhHhcCcc--cChhhHHHHHHHhcccCChHHHHHHHHHHHHhC-----------------------CCcchhHHHHHH
Q 004425 349 FLEFLDLGIC--CDSSCLATVIDGCSVCSNLELGLQLHGFAIKHG-----------------------YLSDVRLGTALV 403 (754)
Q Consensus 349 ~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----------------------~~~~~~~~~~li 403 (754)
+++..-..-. -+...-+.++-...+ .+...+.+..+++-... +..+....+.|+
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLi 1085 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLI 1085 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHH
Confidence 8887533211 111111222211111 12222222222221111 111222222222
Q ss_pred HHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHH
Q 004425 404 DIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRG 483 (754)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 483 (754)
. .-+.++.|.++-++.. ....|+.+..+-.+ .|...+|++-|-+. -|...|.-++..+.+.|.+++-
T Consensus 1086 e---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~--~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1086 E---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQ--GGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred H---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHh--cCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHH
Confidence 2 2234444444444433 33568899999888 88888888776432 3556788999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----------------------CChhHHHHHHHHH
Q 004425 484 RSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD-----------------------RDIVSWNAMLSAY 540 (754)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~ 540 (754)
..++..+++..-+|.+. +.|+-+|++.+++.+-+++...-.. .++..|..|...+
T Consensus 1153 v~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1153 VKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTL 1230 (1666)
T ss_pred HHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 99999888877666654 5788899999998887776543210 1223344444555
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHH
Q 004425 541 ALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEA 620 (754)
Q Consensus 541 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 620 (754)
...|+++.|...-++. .+..||-.+-.+|...+.+.-| +|.. ..+....+-..-++..|...|.++|-
T Consensus 1231 V~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCG-L~iivhadeLeeli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICG-LNIIVHADELEELIEYYQDRGYFEEL 1298 (1666)
T ss_pred HHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcC-ceEEEehHhHHHHHHHHHhcCcHHHH
Confidence 5555555544433221 1334666666666655444332 1211 12222334455677777777777777
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 621 MNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 621 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
+.+++.. +.+. ....+.-|.-.|.+. +.++-.+.++-.+.. ...--+.++..+.--|.|..-++.+-
T Consensus 1299 Isl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsR-----vNipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1299 ISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSR-----VNIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777643 3332 233444444434333 233333333222211 00112334455555566666555544
No 79
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.10 E-value=1e-05 Score=83.62 Aligned_cols=479 Identities=13% Similarity=0.021 Sum_probs=222.5
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHH
Q 004425 165 ILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMA 244 (754)
Q Consensus 165 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 244 (754)
.|..|.+.|.+..|.++-.+. .|.......|-+-..-+-+.|++.+|.+++-.+..|+. .|..|-+.|..+..
T Consensus 797 ai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddm 869 (1636)
T KOG3616|consen 797 AIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDM 869 (1636)
T ss_pred HHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHH
Confidence 344444444444444432221 12222233333333334444444444444444444432 24444455555555
Q ss_pred HHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCC
Q 004425 245 FHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISER 324 (754)
Q Consensus 245 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 324 (754)
+++..+-... .-..|...+..-+-..|++..|+.-|-+.- -|.+-+++|-..+.+++|.++-+.-.-.
T Consensus 870 irlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~ 937 (1636)
T KOG3616|consen 870 IRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGA 937 (1636)
T ss_pred HHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccc
Confidence 5544432211 112345556666667778777776654432 2456677888888888888776543322
Q ss_pred Cc-----hhHHH-------------------HHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHH
Q 004425 325 NL-----ISWTA-------------------LISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELG 380 (754)
Q Consensus 325 ~~-----~~~~~-------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 380 (754)
|. ..|.. -|..-+.++.++-|.++-+-..+. -.|... ..+..-+-..|+++.|
T Consensus 938 n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~~vh--lk~a~~ledegk~eda 1014 (1636)
T KOG3616|consen 938 NAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMGEVH--LKLAMFLEDEGKFEDA 1014 (1636)
T ss_pred cHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCccch--hHHhhhhhhccchhhh
Confidence 21 11211 112223333333333333222211 111111 1111223455777777
Q ss_pred HHHHHHHHHhCC---C-----cchhH---------HHHHHHHHHhCCCHHHHHHHHhcCCCCChh--hHHHHHHHHhhhh
Q 004425 381 LQLHGFAIKHGY---L-----SDVRL---------GTALVDIYAKGGDLKSARMLLDGFSCKYTA--EFNAILSGFMEKI 441 (754)
Q Consensus 381 ~~~~~~~~~~g~---~-----~~~~~---------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~ 441 (754)
.+-+-+.++.+- . |+..- -..-+.++.+..+|..|.++-+.-. ++.. .+.--..+-..
T Consensus 1015 skhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~-~~~l~dv~tgqar~aie-- 1091 (1636)
T KOG3616|consen 1015 SKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHC-EDLLADVLTGQARGAIE-- 1091 (1636)
T ss_pred hHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhC-hhhhHHHHhhhhhcccc--
Confidence 666665554221 0 00000 0012234444444554444433211 1111 11111122222
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHH----------------HhCCCCchhHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSI----------------KTGYAADVIVGNAL 505 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----------------~~~~~~~~~~~~~l 505 (754)
.|++.+|..++-+. -+|+. .++.+...+.+..|+++-+.-+ +.| ...+..+..-
T Consensus 1092 e~d~~kae~fllra----nkp~i-----~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~g-argvd~fvaq 1161 (1636)
T KOG3616|consen 1092 EGDFLKAEGFLLRA----NKPDI-----ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKG-ARGVDGFVAQ 1161 (1636)
T ss_pred ccchhhhhhheeec----CCCch-----HHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcc-ccccHHHHHH
Confidence 45555554443222 25553 3444555566666655543221 122 1223344455
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC----Ch---hHHHHH--------------------HHHHHHcCChHHHHHHHHHHHH
Q 004425 506 ITMYAKCGSIDGAFQIFKGISDR----DI---VSWNAM--------------------LSAYALHGLGKGALLLFEEMKR 558 (754)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~~~~~----~~---~~~~~l--------------------i~~~~~~g~~~~A~~~~~~m~~ 558 (754)
..-+.+.|++..|...+-++... |. .+|.-- ..++-..|..+.|.+++--.-
T Consensus 1162 ak~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~al~~~~~~e~aael~l~f~- 1240 (1636)
T KOG3616|consen 1162 AKEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAADLSIKFLMGDENMEVIGAAGGALDEAGCHEAAAELLLLFD- 1240 (1636)
T ss_pred HHHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHhhhhhhcCCccchhhHHhcchhhhcccccHHHHHHHHHhh-
Confidence 56677788888888877766321 11 111100 011111222222222221110
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---------------HHHhCCC---CCccHHHHHHHHHhhcCCHHHH
Q 004425 559 EGFAPDDISILGVLQACIYSGLSEGGICLFNEI---------------EQIYGLR---PILEHFACMVDLLGRAGRLSEA 620 (754)
Q Consensus 559 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~---------------~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A 620 (754)
.-...|.++++...|.+|.++-++. .+.-|-- .++. .-.-++++...+++++|
T Consensus 1241 --------~~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vd-viaaidl~ien~qwdk~ 1311 (1636)
T KOG3616|consen 1241 --------LSKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVD-VIAAIDLMIENDQWDKA 1311 (1636)
T ss_pred --------hHHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchh-HHHHHHHHHhcccHHHH
Confidence 0123456777777777666554332 2211111 1122 23567889999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHhhc-cCCCCcchHHHHHHH-HHhcC-CchHHHH
Q 004425 621 MNLINSSPFSESPLLWRTLVSVS-KLMANSKFSILASKRLLD-LEPKDAGSFILVSNM-YAGQG-MLDEAAK 688 (754)
Q Consensus 621 ~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~-~~~~g-~~~~a~~ 688 (754)
++--.+-..+|-..-|-++-.+. ...|+...+..++++--. .+|.|...|..+..- +++-| +.++|-.
T Consensus 1312 idtak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ed~lakpgt~~~eay~ 1383 (1636)
T KOG3616|consen 1312 IDTAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFEDMLAKPGTNCAEAYH 1383 (1636)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHHHHhcCCCcchHHHHH
Confidence 99988877777555555555444 455899999998877544 577777777765543 33333 4555543
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=4.5e-08 Score=97.36 Aligned_cols=233 Identities=11% Similarity=-0.054 Sum_probs=164.9
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAG-MEPDP--VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGA 518 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g-~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 518 (754)
.+..+.++..+.+++... ..|+. ..|..+...+...|+.+.|...++.+.+.. +.+...|+.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 556677777777777532 23332 456666777888999999999999988865 45678899999999999999999
Q ss_pred HHHHhccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 004425 519 FQIFKGISD--R-DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIY 595 (754)
Q Consensus 519 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 595 (754)
...|+...+ | +..+|..+..++...|++++|++.|++..+ ..|+..........+...++.++|...|++...
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 999998854 4 456888899999999999999999999998 567654322223334567789999999977654
Q ss_pred CCCCCccHHHHHHHHHhhcCCH--HHHHHHHHh-CCC----CC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-CC
Q 004425 596 GLRPILEHFACMVDLLGRAGRL--SEAMNLINS-SPF----SE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEP-KD 666 (754)
Q Consensus 596 ~~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~-~~~----~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~~ 666 (754)
...|+...+ .++..+ .|+. +++.+.+.+ ... .| ....|..+...+...|+.++|+..|+++++.+| +.
T Consensus 194 ~~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 194 KLDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred hCCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 334443222 333333 4444 333433332 111 12 356899999999999999999999999999997 44
Q ss_pred cchHHHHHHHHHhcCC
Q 004425 667 AGSFILVSNMYAGQGM 682 (754)
Q Consensus 667 ~~~~~~l~~~~~~~g~ 682 (754)
.++-..+..+....++
T Consensus 271 ~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 271 VEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5555555555444333
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.1e-06 Score=82.80 Aligned_cols=403 Identities=11% Similarity=0.001 Sum_probs=241.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHccCCC-CchhHHHHHHHHHhcC-ChhHHHHHHHHhHhcCcccChhhHHHHHHHhccc
Q 004425 297 VGNAIVTMYGKHGMSEEAERMFDAISER-NLISWTALISGYVRSG-HGGKAINGFLEFLDLGICCDSSCLATVIDGCSVC 374 (754)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 374 (754)
.-.-.+..|-..++-+.|.....+.+.. ...--|.|+.-+.+.| +-.++.--+.+.+..-+ .. ...|.+..+.
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp----~a-L~~i~~ll~l 173 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP----MA-LQVIEALLEL 173 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcc----hH-HHHHHHHHHH
Confidence 3344556677778888888888877753 3333444444444433 22222222222211100 00 0000010000
Q ss_pred CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh--CCCHHHHHHHHhcC-----CCCChhhHHHHHHHHhhhhcCCHHH
Q 004425 375 SNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAK--GGDLKSARMLLDGF-----SCKYTAEFNAILSGFMEKIADDEED 447 (754)
Q Consensus 375 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~~~ 447 (754)
+ +..+..--..|-...+.+........+.++.. .++...|...+-.. .+.|+.....+...+.. .|+..+
T Consensus 174 ~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~--~Gdn~~ 250 (564)
T KOG1174|consen 174 G-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYY--NGDYFQ 250 (564)
T ss_pred h-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhh--hcCchH
Confidence 0 00000111112222233444444444444433 34444443333222 24566777888888888 999999
Q ss_pred HHHHHHHHHHcCCCCCHHH-HHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 004425 448 VMVLFSQQRLAGMEPDPVT-FSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGIS 526 (754)
Q Consensus 448 A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 526 (754)
|...|++.+.. .|+..+ .-...-.+...|+++....+...+.... .-+..-|-.-.......++++.|+.+-++..
T Consensus 251 a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I 327 (564)
T KOG1174|consen 251 AEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCI 327 (564)
T ss_pred HHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 99999888754 555432 1112223356677777777776665432 1111112222223344567888888888776
Q ss_pred CC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcc
Q 004425 527 DR---DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILE 602 (754)
Q Consensus 527 ~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 602 (754)
+- ++..|-.-...+...|+.++|.-.|+.... +.|. -..|..|+.+|...|...+|.-.-..... -++.+..
T Consensus 328 ~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~ 403 (564)
T KOG1174|consen 328 DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSAR 403 (564)
T ss_pred ccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcchh
Confidence 53 344444444677888999999999998887 6664 46899999999999999998877776655 3344455
Q ss_pred HHHHHH-HHHhh-cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH
Q 004425 603 HFACMV-DLLGR-AGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYA 678 (754)
Q Consensus 603 ~~~~l~-~~~~~-~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 678 (754)
+...+. ..+.- -.--++|.+++++. ...|+ ....+.+...|...|..+.++.++++.+...|+ ...+..|++++.
T Consensus 404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 404 SLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMR 482 (564)
T ss_pred hhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHH
Confidence 555442 33322 22347899999865 66776 667778888899999999999999999999998 568889999999
Q ss_pred hcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 004425 679 GQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMK 741 (754)
Q Consensus 679 ~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 741 (754)
..+.+.+|.+.|...... .|+.+.-...|..+.++|+
T Consensus 483 A~Ne~Q~am~~y~~ALr~--------------------------dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALRQ--------------------------DPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HhhhHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHHhccC
Confidence 999999999999876442 4555556666666666665
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=8e-07 Score=83.82 Aligned_cols=179 Identities=15% Similarity=0.126 Sum_probs=97.6
Q ss_pred HHHhccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 004425 65 VKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLV---RSAITWTSLIKGYLDDGDYE 141 (754)
Q Consensus 65 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 141 (754)
|.-+...+++..|..+++.-...+-+-...+--=+-.++-+.|++++|..++..+.+ ++...|-.|.-++.--|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 444455677777777777655443222222222234455677888888888776533 34455555655555667777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHH-HHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccC
Q 004425 142 SVLGIACDMYRSEEKFNEHTCSVI-LEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGL 220 (754)
Q Consensus 142 ~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 220 (754)
+|..+-.... +.....-+ +...-+.++-+.-..+++.+... ..-.-+|.+..-..-.+.+|++++.++
T Consensus 109 eA~~~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 109 EAKSIAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7776655542 33333333 33344556666666665554322 122233334333344677777777776
Q ss_pred CCC--CcchHHHHH-HHHHHcCChhHHHHHHHHhHHC
Q 004425 221 AYK--DVRCVNFMI-LEYNKAGESEMAFHVFVHLLSS 254 (754)
Q Consensus 221 ~~~--~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~ 254 (754)
... +-...|.-+ -+|.+..-++-+.++++-..+.
T Consensus 178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 543 333444433 3455666666666666665554
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.03 E-value=1.3e-06 Score=82.24 Aligned_cols=314 Identities=14% Similarity=0.097 Sum_probs=173.4
Q ss_pred HHHHHHhcCChHHHHHHHHccCCCCchhHHHHH---HHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCCh
Q 004425 301 IVTMYGKHGMSEEAERMFDAISERNLISWTALI---SGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNL 377 (754)
Q Consensus 301 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 377 (754)
|-+.+...|++.+|+.-|....+-|...|-++. ..|...|+...|+.-+.+.++. +||-..-..
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi----------- 110 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI----------- 110 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH-----------
Confidence 334455566677777777666666665555543 3566666666666666655542 444321110
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Q 004425 378 ELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRL 457 (754)
Q Consensus 378 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~ 457 (754)
.-...+.+.|.++.|..-|+.+...++. +|...+|.+-+....+
T Consensus 111 -----------------------QRg~vllK~Gele~A~~DF~~vl~~~~s-------------~~~~~eaqskl~~~~e 154 (504)
T KOG0624|consen 111 -----------------------QRGVVLLKQGELEQAEADFDQVLQHEPS-------------NGLVLEAQSKLALIQE 154 (504)
T ss_pred -----------------------HhchhhhhcccHHHHHHHHHHHHhcCCC-------------cchhHHHHHHHHhHHH
Confidence 0112244555566665555554422110 1111122111111100
Q ss_pred cCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCChhHHH
Q 004425 458 AGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGI---SDRDIVSWN 534 (754)
Q Consensus 458 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~ 534 (754)
.......+..+...|+...+......+++.. +.|...+..-..+|...|++..|+.=++.. ...+..+.-
T Consensus 155 ------~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~y 227 (504)
T KOG0624|consen 155 ------HWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHY 227 (504)
T ss_pred ------HHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHH
Confidence 0112233344455677777777777777653 567777888888899999999888766554 345666666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhc
Q 004425 535 AMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRA 614 (754)
Q Consensus 535 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 614 (754)
-+-..+...|+.+.++...++.++ +.||...... .-+.+.+..+.++.|.+ ..+.
T Consensus 228 kis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~------~YKklkKv~K~les~e~-----------------~ie~ 282 (504)
T KOG0624|consen 228 KISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFP------FYKKLKKVVKSLESAEQ-----------------AIEE 282 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHH------HHHHHHHHHHHHHHHHH-----------------HHhh
Confidence 677778888999999999999888 7788752111 11122333333333333 1233
Q ss_pred CCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 004425 615 GRLSEAMNLINSS-PFSES-----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAK 688 (754)
Q Consensus 615 g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 688 (754)
++|.++++-.++. ...|. ...+..+-.+++..|++.+|++...++++++|+|..++...+.+|.-...+++|+.
T Consensus 283 ~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 283 KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIH 362 (504)
T ss_pred hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4444444444322 22232 11223333444555667777777777777777777777777777777777777777
Q ss_pred HHHHHhh
Q 004425 689 VRTTMND 695 (754)
Q Consensus 689 ~~~~m~~ 695 (754)
-|++..+
T Consensus 363 dye~A~e 369 (504)
T KOG0624|consen 363 DYEKALE 369 (504)
T ss_pred HHHHHHh
Confidence 6666554
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.00 E-value=6.5e-06 Score=86.66 Aligned_cols=428 Identities=13% Similarity=0.067 Sum_probs=230.4
Q ss_pred HHHHHcCChhHHHHHHHHhHHCCCCCCcch-HHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC--
Q 004425 233 LEYNKAGESEMAFHVFVHLLSSDFEPNDYT-FTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHG-- 309 (754)
Q Consensus 233 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-- 309 (754)
..+...|++++|++.+..-.. ..+|..+ +......+.+.|+.++|..++..+++.+ +.+...|..|..+..-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 455778888888888876433 2345444 4455566777888888888888888775 344555555555542222
Q ss_pred ---ChHHHHHHHHccCC--CCchhHHHHHHHHHhcCChh-HHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHH
Q 004425 310 ---MSEEAERMFDAISE--RNLISWTALISGYVRSGHGG-KAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQL 383 (754)
Q Consensus 310 ---~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 383 (754)
..+...++++++.. |...+..-+.-.+.....+. .+...+..+..+|+++ +|+.+-.-|..........++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 34444555555433 21111111111111111121 2233344444444432 222222222222222222222
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHH--HHHHhhhhcCCHHHHHHHHHHHHHcCCC
Q 004425 384 HGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAI--LSGFMEKIADDEEDVMVLFSQQRLAGME 461 (754)
Q Consensus 384 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~~~A~~~~~~m~~~g~~ 461 (754)
+......- ...|.+.... =..-..|....|... ...|-. .|++++|++++++.++. .
T Consensus 166 ~~~~~~~l---------------~~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~--~g~~~~Al~~Id~aI~h--t 224 (517)
T PF12569_consen 166 VEEYVNSL---------------ESNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDY--LGDYEKALEYIDKAIEH--T 224 (517)
T ss_pred HHHHHHhh---------------cccCCCCCcc--ccccCCchHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHhc--C
Confidence 22221100 0000000000 000012333345444 345556 89999999999998877 6
Q ss_pred CCH-HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCh----------
Q 004425 462 PDP-VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDI---------- 530 (754)
Q Consensus 462 p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------- 530 (754)
|+. ..|..-.+.+-+.|++.+|.+..+.++... .-|..+-+-.+..+.++|++++|.+++.....++.
T Consensus 225 Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 225 PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence 774 567777888999999999999999998876 34777777788899999999999999988876542
Q ss_pred hHHH--HHHHHHHHcCChHHHHHHHHHHHHc--CCCCCH-------------HHHHHHHHHHHhcC---C----HHHHHH
Q 004425 531 VSWN--AMLSAYALHGLGKGALLLFEEMKRE--GFAPDD-------------ISILGVLQACIYSG---L----SEGGIC 586 (754)
Q Consensus 531 ~~~~--~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~-------------~t~~~ll~a~~~~g---~----~~~a~~ 586 (754)
..|- .-..+|.+.|++..|++-|....+. .+.-|. .+|..++...-+.. . ...|++
T Consensus 304 c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~ 383 (517)
T PF12569_consen 304 CMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIR 383 (517)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 1343 3567889999999998877766542 122222 23333333222111 1 122444
Q ss_pred HHHHHHHHhCCCCCccH-----------HHHHHHHH---hhcCCHHHHHHHHH-----------hC------CCCCCHHH
Q 004425 587 LFNEIEQIYGLRPILEH-----------FACMVDLL---GRAGRLSEAMNLIN-----------SS------PFSESPLL 635 (754)
Q Consensus 587 ~~~~~~~~~~~~p~~~~-----------~~~l~~~~---~~~g~~~~A~~~~~-----------~~------~~~p~~~~ 635 (754)
+|-.+-........... -.-+..-. .+...-+++...-. +. +..+|+..
T Consensus 384 iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G 463 (517)
T PF12569_consen 384 IYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG 463 (517)
T ss_pred HHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH
Confidence 44444331000000000 00011100 11111111111110 00 12223322
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 004425 636 WRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 636 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
-. |+ ....=+++|.+.++-+.+..|++..+|..-..+|.+.|++--|.+.+.+
T Consensus 464 ek-L~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 464 EK-LL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HH-Hh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 11 11 2334578899999999999999999999999999999999999888764
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.00 E-value=2e-05 Score=80.85 Aligned_cols=440 Identities=12% Similarity=0.032 Sum_probs=238.9
Q ss_pred CCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCC---CcchHHHHHHHHHHcCChhHHHHHH
Q 004425 172 LEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYK---DVRCVNFMILEYNKAGESEMAFHVF 248 (754)
Q Consensus 172 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 248 (754)
.+++..+.++.+.+.+ +++....+....--.+...|+-++|....+.-... +.++|..+.-.+-...++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 3455555666655555 33333333333333345567778887777655443 4557777777777777888888888
Q ss_pred HHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC---CC
Q 004425 249 VHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE---RN 325 (754)
Q Consensus 249 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~ 325 (754)
...... .||.. .++.-|.-.-+..|+++..........+ ..
T Consensus 99 ~nAl~~--~~dN~----------------------------------qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 99 RNALKI--EKDNL----------------------------------QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHHHhc--CCCcH----------------------------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 776654 23322 1111111111222333333332222222 23
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHhHhcC-cccChhhHHHHHH------HhcccCChHHHHHHHHHHHHhCCCcchhH
Q 004425 326 LISWTALISGYVRSGHGGKAINGFLEFLDLG-ICCDSSCLATVID------GCSVCSNLELGLQLHGFAIKHGYLSDVRL 398 (754)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 398 (754)
...|..+..++.-.|+...|..++++..+.. -.|+...|..... .....|..+.|.+.+..-... +......
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~ 221 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAF 221 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHH
Confidence 4567777777777777777777777776554 2455554443322 234456666666555443321 1222233
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCC--CChhhHHHHH-HHHhhhhcCCHHHHH-HHHHHHHHcCCCCCHHH-HHHHHHH
Q 004425 399 GTALVDIYAKGGDLKSARMLLDGFSC--KYTAEFNAIL-SGFMEKIADDEEDVM-VLFSQQRLAGMEPDPVT-FSRLLSL 473 (754)
Q Consensus 399 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~~~~~~~~A~-~~~~~m~~~g~~p~~~~-~~~ll~~ 473 (754)
-..-.+.+.+.+++++|..++..+.. ||...|.-.+ .++.+ -.+.-+++ .+|....+. .|.... -..=++.
T Consensus 222 ~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk--~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsv 297 (700)
T KOG1156|consen 222 EETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGK--IKDMLEALKALYAILSEK--YPRHECPRRLPLSV 297 (700)
T ss_pred hhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHH--HhhhHHHHHHHHHHHhhc--CcccccchhccHHH
Confidence 34455667788888888888888764 3444444333 33333 23333333 566555443 111110 0111111
Q ss_pred HhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH---H-HHHHHhcc--------------CCCChhHHHH
Q 004425 474 SASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSID---G-AFQIFKGI--------------SDRDIVSWNA 535 (754)
Q Consensus 474 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~-A~~~~~~~--------------~~~~~~~~~~ 535 (754)
.....-.+....++....+.|+++-. ..+...|-.-...+ + +..+...+ ..|....|+.
T Consensus 298 l~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred hCcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHH
Confidence 22222233445566666677765432 33333332211111 1 11111111 1244555654
Q ss_pred --HHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHh
Q 004425 536 --MLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLG 612 (754)
Q Consensus 536 --li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 612 (754)
++..|-..|+++.|+.+++..+. -.|+.+ -|..=.+.+.++|++++|..++++..+ --.||...=+--+.-..
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHHH
Confidence 67788899999999999999887 456654 455556788999999999999999866 23344443335666778
Q ss_pred hcCCHHHHHHHHHhCCCCC-C--------HHHHHHH--HHHHHhcCChHHHHHHHHHhh
Q 004425 613 RAGRLSEAMNLINSSPFSE-S--------PLLWRTL--VSVSKLMANSKFSILASKRLL 660 (754)
Q Consensus 613 ~~g~~~~A~~~~~~~~~~p-~--------~~~~~~l--~~~~~~~g~~~~a~~~~~~~~ 660 (754)
++.+.++|.++.....-.. + .-.|-.+ +.+|.+.|++.+|.+-+..+.
T Consensus 451 rAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 8999999998876552111 1 1234333 356777788877776654443
No 86
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=7.4e-08 Score=89.64 Aligned_cols=224 Identities=13% Similarity=0.040 Sum_probs=174.6
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhcCC--CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHH
Q 004425 397 RLGTALVDIYAKGGDLKSARMLLDGFS--CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTF-SRLLSL 473 (754)
Q Consensus 397 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~ 473 (754)
.--+-+..+|.+.|.+.+|++.|+.-. .+-+.+|-.|-..|.+ -.+++.|+.+|.+-.+. .|-.+|| ..+.+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~r--idQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQR--IDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHH--hccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 334678889999999999999998765 5667788888889999 99999999999998875 6777666 456677
Q ss_pred HhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHH
Q 004425 474 SASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGAL 550 (754)
Q Consensus 474 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 550 (754)
+...++.+.+.++++...+.. +.++....++...|.-.++++-|++.|+++.+ .+...|+.+.-+|.-.++++-++
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 888899999999999998864 45666666777788888999999999998765 56678888888888899999999
Q ss_pred HHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004425 551 LLFEEMKREGFAPDDI--SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 551 ~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (754)
..|++.+..--.|+.. .|-.+.......|+...|.+.|+-... .-.-..+.++.|.-+-.+.|++++|..+++..
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999988765556553 566677777777888888888877754 23334556677766667777777777777654
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=4.7e-05 Score=80.05 Aligned_cols=149 Identities=11% Similarity=0.039 Sum_probs=98.4
Q ss_pred CChhhhHHHHH--HHHccCChhHHHHHhccCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHhC-C-------C-CCCh
Q 004425 91 NDTFEANNLIN--LYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIACDMYRS-E-------E-KFNE 159 (754)
Q Consensus 91 ~~~~~~~~li~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g-------~-~p~~ 159 (754)
-|..+-.++++ .|..-|+.+.|.+-.+.+. +-..|..|.+.|++..+.+-|.-++-.|... | . .|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 45566666665 4667799999888776654 4567999999999999999888888877532 1 1 121
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCC-cchHHHHHHHHHHc
Q 004425 160 HTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKD-VRCVNFMILEYNKA 238 (754)
Q Consensus 160 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~ 238 (754)
.+=.-+.-.....|.+++|+.+|.+-++.. .|=..|-..|.+++|.++-+.-.+-. ..||.--...+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 111122222335678888888888776543 34456777899999988876433221 22565566666677
Q ss_pred CChhHHHHHHHHh
Q 004425 239 GESEMAFHVFVHL 251 (754)
Q Consensus 239 g~~~~A~~~~~~m 251 (754)
++.+.|++.|++-
T Consensus 872 ~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 872 RDIEAALEYYEKA 884 (1416)
T ss_pred ccHHHHHHHHHhc
Confidence 8888888888753
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.91 E-value=1.5e-05 Score=81.80 Aligned_cols=413 Identities=10% Similarity=0.027 Sum_probs=230.0
Q ss_pred HcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHH
Q 004425 237 KAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAER 316 (754)
Q Consensus 237 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 316 (754)
..+++...+++.+.+.+. ..--..|....--.++..|+.++|........+.. .-+.+.|..+.-.+-...++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 445666667766666653 21122333333333456778888877766655532 3355667777766777788899999
Q ss_pred HHHccCC---CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccC-hhhHHHHHHHhcccCChHHHHHHHHHHHHhC-
Q 004425 317 MFDAISE---RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCD-SSCLATVIDGCSVCSNLELGLQLHGFAIKHG- 391 (754)
Q Consensus 317 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g- 391 (754)
.|..... .|...|.-+----.+.++++.....-.+..+. .|+ ...|..+..+..-.|+...|..+.+...+..
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8887653 35566666655556777777777776666654 333 3456666677777888888888888887754
Q ss_pred CCcchhHHHHHH------HHHHhCCCHHHHHHHHhcCCCC--ChhhH-HHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 004425 392 YLSDVRLGTALV------DIYAKGGDLKSARMLLDGFSCK--YTAEF-NAILSGFMEKIADDEEDVMVLFSQQRLAGMEP 462 (754)
Q Consensus 392 ~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~--~~~~~-~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p 462 (754)
-.|+...+.-.. ....+.|..+.|.+.+...... |-..+ ..-..-+.+ .++.++|..++..++.. .|
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~k--l~~lEeA~~~y~~Ll~r--nP 250 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMK--LGQLEEAVKVYRRLLER--NP 250 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHH--HhhHHhHHHHHHHHHhh--Cc
Confidence 244444443222 2234456666666555444321 11111 111223333 55666666666666554 45
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhccCC-------CChhHHH
Q 004425 463 DPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAF-QIFKGISD-------RDIVSWN 534 (754)
Q Consensus 463 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~-------~~~~~~~ 534 (754)
|..-|.-.+.. ++++-.+.-++. .+|....+ |--...+
T Consensus 251 dn~~Yy~~l~~----------------------------------~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls 296 (700)
T KOG1156|consen 251 DNLDYYEGLEK----------------------------------ALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS 296 (700)
T ss_pred hhHHHHHHHHH----------------------------------HHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH
Confidence 55444333322 222211222222 33333321 1111111
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHHh-------C--CCCCc
Q 004425 535 AMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEG----GICLFNEIEQIY-------G--LRPIL 601 (754)
Q Consensus 535 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~-------~--~~p~~ 601 (754)
.+. ...-.+..-+++..+++.|+++--.. +.+.+-.-...+- +..+...+.... + -+|+.
T Consensus 297 vl~----~eel~~~vdkyL~~~l~Kg~p~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Ptt 369 (700)
T KOG1156|consen 297 VLN----GEELKEIVDKYLRPLLSKGVPSVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTT 369 (700)
T ss_pred HhC----cchhHHHHHHHHHHHhhcCCCchhhh---hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchH
Confidence 111 01122333445666667776653333 2222222211111 111111111100 0 13443
Q ss_pred c--HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 602 E--HFACMVDLLGRAGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 602 ~--~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
. ++..++..+-+.|+++.|..+++.. ...|. +..|..-.+.+...|+++.|...++++.+++-.|-..-..-+.-.
T Consensus 370 llWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 370 LLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 3 4457888888899999999998855 55565 445555567777788999999999999998877665555677778
Q ss_pred HhcCCchHHHHHHHHHhhCCC
Q 004425 678 AGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 678 ~~~g~~~~a~~~~~~m~~~~~ 698 (754)
.++.+.++|.++..+....|.
T Consensus 450 LrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHccccHHHHHHHHHhhhccc
Confidence 888899999998888866554
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.90 E-value=1.3e-05 Score=84.33 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=62.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcCcccC-hhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCC
Q 004425 332 LISGYVRSGHGGKAINGFLEFLDLGICCD-SSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGG 410 (754)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 410 (754)
+...|-..|++++|++..++.++. .|+ ...|..-...+-+.|++.+|.+.++...... .-|..+-+..+..+.++|
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCC
Confidence 344455555555555555555543 333 2334444444555555555555555555433 234444455555566666
Q ss_pred CHHHHHHHHhcCCCCChh----------hHH--HHHHHHhhhhcCCHHHHHHHHHHHHH
Q 004425 411 DLKSARMLLDGFSCKYTA----------EFN--AILSGFMEKIADDEEDVMVLFSQQRL 457 (754)
Q Consensus 411 ~~~~A~~~~~~~~~~~~~----------~~~--~li~~~~~~~~~~~~~A~~~~~~m~~ 457 (754)
++++|.+++......+.. .|- ....+|.+ .|++..|++.|....+
T Consensus 277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r--~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR--QGDYGLALKRFHAVLK 333 (517)
T ss_pred CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHH
Confidence 666666666555433211 121 22345666 6777777666655544
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.87 E-value=8.6e-07 Score=79.07 Aligned_cols=195 Identities=12% Similarity=0.032 Sum_probs=111.7
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCC
Q 004425 469 RLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGL 545 (754)
Q Consensus 469 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 545 (754)
-+.-+|...|+...|+.-++++++.. +.+..++..+...|.+.|+.+.|.+.|++..+ .+-...|....-+|..|+
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence 34445555555555555555555543 33445555666666666666666666665532 233455555555666666
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHH
Q 004425 546 GKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNL 623 (754)
Q Consensus 546 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 623 (754)
+++|...|++....-.-|. ..||..+.-+..+.|+.+.|..+|++..+ ..|+ ......+.....+.|++-+|..+
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 6666666666664322222 23666666666666666666666666654 2232 34555666666667777777666
Q ss_pred HHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 624 INSS--PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 624 ~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
++.. ...+...+....+..-...||.+.+.+.-.++....|...
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 6654 2224444444445555566777666666666666666643
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.9e-05 Score=79.45 Aligned_cols=408 Identities=11% Similarity=0.043 Sum_probs=206.8
Q ss_pred HHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC--CCc-hhHHHHHHHHHhcCChhH
Q 004425 268 SVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE--RNL-ISWTALISGYVRSGHGGK 344 (754)
Q Consensus 268 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~ 344 (754)
++.+..|+++.|...|-+.+... ++|.+.|+.-..+|.+.|++++|.+=-.+-.+ |+. ..|+-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 45677899999999998887765 34888888888899999999888766555443 432 468888888888899999
Q ss_pred HHHHHHHhHhcCcccChhhHHHHHHHhccc---CChHHHHHHHHHHHHhCC---CcchhHHHHHHHHHH----------h
Q 004425 345 AINGFLEFLDLGICCDSSCLATVIDGCSVC---SNLELGLQLHGFAIKHGY---LSDVRLGTALVDIYA----------K 408 (754)
Q Consensus 345 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~----------~ 408 (754)
|+.-|.+-++.. +-+...++.+..++... ++.-..-.++..+...-. ......|..++..+- .
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 999988876641 22345566666665111 000000011111111000 000111222222111 1
Q ss_pred CCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHH----HHHHHHHHHHH-cCCCCCHHHHHHHHHHHhcccchHHH
Q 004425 409 GGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEE----DVMVLFSQQRL-AGMEPDPVTFSRLLSLSASQACLVRG 483 (754)
Q Consensus 409 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~----~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~a 483 (754)
-.++..+.-.+......-...-..++.. . ...+. .......++.+ ....--..-...+.++..+..++..+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~--~--~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILA--S--MAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCC--C--CCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 1111122111111100000000000000 0 00000 00000000000 00000112234455555566666666
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChh----------HHHHHHHHHHHcCChHHHHHHH
Q 004425 484 RSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIV----------SWNAMLSAYALHGLGKGALLLF 553 (754)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~~~~~~g~~~~A~~~~ 553 (754)
.+-+....+.. -++.-++....+|...|.+.++...-+...+.+.. +...+..+|.+.++++.|+..|
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 66666666554 34444455556666666666555555443332111 1222344566667777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccH-HHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 004425 554 EEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEH-FACMVDLLGRAGRLSEAMNLINSS-PFSE 631 (754)
Q Consensus 554 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 631 (754)
++.+.....||..+ +....+++....+.. .-+.|.... ...=...+.+.|++.+|++.+.++ ...|
T Consensus 322 ~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~---a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDLLS---------KLKEAEKALKEAERK---AYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP 389 (539)
T ss_pred HHHhhhhcCHHHHH---------HHHHHHHHHHHHHHH---HhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 77665444444322 122233333333332 123333211 111245556677777777777654 2234
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 632 -SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 632 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
|...|.....++...|++..|+.-.+..++++|+....|..-+-++....+|++|.+.|++..+
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666777777777777777777777777777777777777777777777777777777766544
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=7.3e-08 Score=97.09 Aligned_cols=217 Identities=16% Similarity=0.128 Sum_probs=152.4
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 004425 476 SQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLL 552 (754)
Q Consensus 476 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 552 (754)
+.|++.+|.-.|+..++.. +-+...|.-|...-...++-..|+..+++..+ .|....-.|...|...|.-.+|+.+
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444555555555555443 33455555565556666666666666666544 3445566666777777888888888
Q ss_pred HHHHHHcCCCCCHHHHHHH--------HHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHH
Q 004425 553 FEEMKREGFAPDDISILGV--------LQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLI 624 (754)
Q Consensus 553 ~~~m~~~g~~p~~~t~~~l--------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 624 (754)
++.-+... |...-...- -....+........++|-.+....+..+|.+++.+|.-+|.-.|.+++|.+.|
T Consensus 376 L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 87776532 111100000 00111122233445555555554576688889999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 625 NSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 625 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+.. ..+| |...||-|...+....+.++|+.+|.+++++.|....+.+.|+-.|...|.++||.+.+-....
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 965 6667 7999999999999999999999999999999999999999999999999999999998776644
No 93
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.83 E-value=0.0003 Score=76.07 Aligned_cols=157 Identities=13% Similarity=0.050 Sum_probs=99.7
Q ss_pred hhHHHHHHHHccCChhHHHHHhccCCCC---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHH--HHh
Q 004425 95 EANNLINLYAKFNRLDVAQKLFDGMLVR---SAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVIL--EAC 169 (754)
Q Consensus 95 ~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll--~~~ 169 (754)
.|..|-..|....+...|.+.|+...+- +..++......|++..+++.|..+.-..-+.. +.-...++.+- -.+
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccccc
Confidence 5677777777777888888888876443 56678888888999999988888733222111 00111122222 223
Q ss_pred ccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHH-H--HHHHHHcCChhHHHH
Q 004425 170 SLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNF-M--ILEYNKAGESEMAFH 246 (754)
Q Consensus 170 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-l--i~~~~~~g~~~~A~~ 246 (754)
-..++...+..-|+...+.. +.|...|..|..+|.++|++..|.++|.+...-+..++-. . .-.-+..|++++|++
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 35566666666666555443 4467788888889999999999999987766543333222 1 223456788888888
Q ss_pred HHHHhHH
Q 004425 247 VFVHLLS 253 (754)
Q Consensus 247 ~~~~m~~ 253 (754)
.+.....
T Consensus 652 ~l~~ii~ 658 (1238)
T KOG1127|consen 652 ALGLIIY 658 (1238)
T ss_pred HHHHHHH
Confidence 8777653
No 94
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.82 E-value=2.5e-05 Score=84.00 Aligned_cols=551 Identities=10% Similarity=-0.018 Sum_probs=296.3
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCC-cH--HHHHHHH
Q 004425 125 ITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFEN-NV--FVGTSLI 201 (754)
Q Consensus 125 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~--~~~~~li 201 (754)
..|..|-..|....+...|.++|+...+.... |......+.+.+++..+++.|..+. +......| -. .-|-.+-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~--l~~~qka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEIC--LRAAQKAPAFACKENWVQRG 569 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHH--HHHhhhchHHHHHhhhhhcc
Confidence 45667777777777778888888887665422 5556677778888888888888772 22111111 11 1122223
Q ss_pred HHhHhcCCHhHHHHHhccCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHH--HHHhccCCc
Q 004425 202 SMYFHSGCFREAENVFRGLAY---KDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVI--SVCYENLGV 276 (754)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--~~~~~~~~~ 276 (754)
-.|.+.++...|..-|+...+ .|...|..+..+|.+.|++..|+++|.+.... .|+. +|...- ..-|..|.+
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKY 646 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhH
Confidence 345667778888888876553 36778888999999999999999999887653 4443 232222 223567888
Q ss_pred hHHHHHHHHHHHhc------CCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHH-HHHHhcC-C---hhHH
Q 004425 277 EEGKQLHGLAVKFG------VVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALI-SGYVRSG-H---GGKA 345 (754)
Q Consensus 277 ~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li-~~~~~~g-~---~~~A 345 (754)
.++...+...+..- ...-..++-.+...+.-.|-..+|...|+.-. ..+...+ ...+... . ...|
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f~~~l~h~~~~~~~~Wi~asda 722 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESFIVSLIHSLQSDRLQWIVASDA 722 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHHHHhhhhhHHHHHHHhHH
Confidence 88888877765431 11112222222222333333334444443321 1111111 1101000 0 1123
Q ss_pred HHHHHHhHhcCcccChhhHHHHHHHhcccCCh---H---HHHHHHHHHHHhCCCcchhHHHHHHHHHHh----CC----C
Q 004425 346 INGFLEFLDLGICCDSSCLATVIDGCSVCSNL---E---LGLQLHGFAIKHGYLSDVRLGTALVDIYAK----GG----D 411 (754)
Q Consensus 346 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g----~ 411 (754)
..+|.+.. -. .|+......+..-....+.. + .|.+.+-.- ..+..+...+..|+..|.+ +| +
T Consensus 723 c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h--lsl~~~~~~WyNLGinylr~f~~l~et~~~ 798 (1238)
T KOG1127|consen 723 CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH--LSLAIHMYPWYNLGINYLRYFLLLGETMKD 798 (1238)
T ss_pred HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH--HHHhhccchHHHHhHHHHHHHHHcCCcchh
Confidence 33333332 11 22222222222212222221 1 111111111 1112223333333333322 22 2
Q ss_pred HHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHH
Q 004425 412 LKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHA 488 (754)
Q Consensus 412 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 488 (754)
...|...+.... ..+...||.|.-. .. .|++.-|...|-+-... .+-+..+|..+--.|....+++.|...+.
T Consensus 799 ~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg--~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~ 874 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVSLCANNEGLWNALGVL-SG--IGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFS 874 (1238)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHh-hc--cchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHH
Confidence 234555555433 5566778877655 33 56666666666554443 13344677777777788888888888888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc-----C---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc-
Q 004425 489 YSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGI-----S---DRDIVSWNAMLSAYALHGLGKGALLLFEEMKRE- 559 (754)
Q Consensus 489 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 559 (754)
...... +.+..-|-.....-...|+.-++..+|..- . -++..-|-....-...+|+.++-+..-+.+-..
T Consensus 875 ~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs 953 (1238)
T KOG1127|consen 875 SVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSAS 953 (1238)
T ss_pred hhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhH
Confidence 776643 234444443333445567777777777642 1 144444544444455666666554443333211
Q ss_pred --------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHH----HHHHHHhhcCCHHHHHHHHHhC
Q 004425 560 --------GFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFA----CMVDLLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 560 --------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~ 627 (754)
|.+-+...|........+.+.+..|.+...+...-...+-+...|+ .....+...|.++.|..-+...
T Consensus 954 ~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~ 1033 (1238)
T KOG1127|consen 954 LALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKE 1033 (1238)
T ss_pred HHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhccc
Confidence 2233446788888888888888888877776544223333444444 4555666778888877776655
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcch---HHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 628 PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGS---FILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 628 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+..-|..+..+-+.. ...|+++.+...|++++.+-.++... ...++.....++.-+.|....-+...
T Consensus 1034 ~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1034 WMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred chhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 444444444333333 45678999999999999876554442 33344445566677777766555544
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=6.9e-05 Score=78.86 Aligned_cols=222 Identities=11% Similarity=0.060 Sum_probs=145.6
Q ss_pred hccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCCC-----------Ch-hhHHHHHHHHh
Q 004425 68 SIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVR-----------SA-ITWTSLIKGYL 135 (754)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----------~~-~~~~~li~~~~ 135 (754)
|..-|+.+.|.+-.+.+. +..+|..+-+++.+..+++-|.-.+..|..- +. ..-..+.-.-.
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 344577777776666554 3457899999999998888887777776221 11 11112222234
Q ss_pred cCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHH
Q 004425 136 DDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAEN 215 (754)
Q Consensus 136 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 215 (754)
.-|..++|..+|++.++. ..+=+.|-..|.+++|.++-+.--+-.+. .||-....-+-..++++.|++
T Consensus 812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHH
Confidence 568889999999988764 33445566778888888876543222222 234444444556678888888
Q ss_pred HhccCCC-----------------------CCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc
Q 004425 216 VFRGLAY-----------------------KDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYE 272 (754)
Q Consensus 216 ~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 272 (754)
.|++... +|...|.---..+-..|+.+.|+.+|...+ .|-++++..|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEee
Confidence 8876542 133445545555556788888888887654 35667777888
Q ss_pred cCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccC
Q 004425 273 NLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAIS 322 (754)
Q Consensus 273 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 322 (754)
.|+.++|.++-++ .-|....-.|.+.|-..|++.+|..+|.+..
T Consensus 951 qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 951 QGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8888888887665 2355556667788888888888888887654
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.81 E-value=0.00047 Score=81.42 Aligned_cols=225 Identities=12% Similarity=0.065 Sum_probs=112.3
Q ss_pred HHHHhcccchHHHHHHHHHHHHhCC---CC--chhHHHHHHHHHHhcCCHHHHHHHHhccCC-------C----ChhHHH
Q 004425 471 LSLSASQACLVRGRSLHAYSIKTGY---AA--DVIVGNALITMYAKCGSIDGAFQIFKGISD-------R----DIVSWN 534 (754)
Q Consensus 471 l~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~ 534 (754)
...+...|+++.|...+.......- .+ .......+...+...|++++|...+++... + ....+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 3344455555555555555443210 01 112233444455566666666665554321 0 111233
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHH-----H
Q 004425 535 AMLSAYALHGLGKGALLLFEEMKRE--GFAPD--DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHF-----A 605 (754)
Q Consensus 535 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~ 605 (754)
.+...+...|++++|...+++.... ...+. ...+..+.......|++++|...++.+............+ .
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 3444555567777776666665432 11121 1233334445566677777777766664421111100001 0
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCChHHHHHHHHHhhccCCC------CcchHHHH
Q 004425 606 CMVDLLGRAGRLSEAMNLINSSPFS--ESP----LLWRTLVSVSKLMANSKFSILASKRLLDLEPK------DAGSFILV 673 (754)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l 673 (754)
.....+...|+.++|.+++...... ... ..+..+..++...|+.++|...++++++.... ...++..+
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l 737 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILL 737 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 1123344567777777776544211 111 11344555666677777777777777664211 22356666
Q ss_pred HHHHHhcCCchHHHHHHHHHhh
Q 004425 674 SNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 674 ~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+.+|.+.|+.++|...+.+..+
T Consensus 738 a~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 738 NQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777776654
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.81 E-value=4.7e-07 Score=88.56 Aligned_cols=156 Identities=12% Similarity=0.115 Sum_probs=95.4
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCC
Q 004425 505 LITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACI----YSGL 580 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~ 580 (754)
...+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ +..|.. ...+..++. ..+.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHHhCchh
Confidence 344566778888888887765 4455555677788888888888888888877 444543 333333332 2235
Q ss_pred HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-HHHHHHHH
Q 004425 581 SEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANS-KFSILASK 657 (754)
Q Consensus 581 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~a~~~~~ 657 (754)
+.+|..+|+++.+ ...+++.+.+.+.-+....|++++|.+++++. ...| |+.++..++-+....|+. +.+.+...
T Consensus 183 ~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 7778888888755 34556666666666677777777777666543 3333 455555555555555655 55666666
Q ss_pred HhhccCCCCc
Q 004425 658 RLLDLEPKDA 667 (754)
Q Consensus 658 ~~~~~~p~~~ 667 (754)
++...+|+++
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 6666666643
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=1.5e-05 Score=73.70 Aligned_cols=385 Identities=12% Similarity=0.048 Sum_probs=190.1
Q ss_pred chHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC--CCchhHHH-HHHHHH
Q 004425 261 YTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE--RNLISWTA-LISGYV 337 (754)
Q Consensus 261 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~ 337 (754)
.-|++++..+.+..++..+.+++..-.+.. +.+....+.|...|....++..|-..++.+.. |...-|.. -...+.
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 334555555555555555555555444332 12444445555566666666666666666543 33333322 234555
Q ss_pred hcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHH
Q 004425 338 RSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARM 417 (754)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 417 (754)
+.+.+.+|+.+...|.+. |+...-..-+.+.. ....+++..++.
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAI---------------------------------kYse~Dl~g~rs 133 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAI---------------------------------KYSEGDLPGSRS 133 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHH---------------------------------hcccccCcchHH
Confidence 666777777777666542 11111111111110 111233333444
Q ss_pred HHhcCCC-CChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCC
Q 004425 418 LLDGFSC-KYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLA-GMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGY 495 (754)
Q Consensus 418 ~~~~~~~-~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 495 (754)
+.++.+. .+..+.+.......+ .|+++.|++-|+...+- |.+| ...|+..+ +.-+.++.+.|.++..+++++|+
T Consensus 134 LveQlp~en~Ad~~in~gCllyk--egqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 134 LVEQLPSENEADGQINLGCLLYK--EGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHhccCCCccchhccchheeec--cccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhh
Confidence 4444331 222222222222223 45555555555544442 2332 22333322 22334445555555555544433
Q ss_pred CC-------------c---------------hhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CChhHHHHHHHHHHH
Q 004425 496 AA-------------D---------------VIVGNALITMYAKCGSIDGAFQIFKGISD-----RDIVSWNAMLSAYAL 542 (754)
Q Consensus 496 ~~-------------~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~ 542 (754)
+. | +..+|.-...+.+.|+++.|.+.+-.|+. -|++|...+.-.- .
T Consensus 210 r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~ 288 (459)
T KOG4340|consen 210 RQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-M 288 (459)
T ss_pred hcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-c
Confidence 21 1 11122223345678999999999999964 4777776554322 2
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCC-CCccHHHHHHHHHh-hcCCHHH
Q 004425 543 HGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLR-PILEHFACMVDLLG-RAGRLSE 619 (754)
Q Consensus 543 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~ 619 (754)
.+++.+..+-++-++. +.| -..||..++-.||+..-++-|..++-+-.. .-+. -+...| .+++++. ..-..++
T Consensus 289 ~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly-~LLdaLIt~qT~pEe 364 (459)
T KOG4340|consen 289 DARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLY-DLLDALITCQTAPEE 364 (459)
T ss_pred cCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHH-HHHHHHHhCCCCHHH
Confidence 3556666666666666 445 346999999999999988888877643211 0000 011122 3444443 3456777
Q ss_pred HHHHHHhCCCCCCHHHHHHH-HHHH-HhcCChH----HHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 620 AMNLINSSPFSESPLLWRTL-VSVS-KLMANSK----FSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 620 A~~~~~~~~~~p~~~~~~~l-~~~~-~~~g~~~----~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
|.+-++.+...- ..-.+.+ +..- .++.+-+ .++.-+++.+++- -......+++|.+..++..++++|+.-
T Consensus 365 a~KKL~~La~~l-~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~S 440 (459)
T KOG4340|consen 365 AFKKLDGLAGML-TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKS 440 (459)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHH
Confidence 777665541100 0001111 1111 1122222 2333344444432 224566788899999999999999865
Q ss_pred hh
Q 004425 694 ND 695 (754)
Q Consensus 694 ~~ 695 (754)
.+
T Consensus 441 ve 442 (459)
T KOG4340|consen 441 VE 442 (459)
T ss_pred Hh
Confidence 44
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.76 E-value=8e-07 Score=85.85 Aligned_cols=179 Identities=11% Similarity=-0.005 Sum_probs=111.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-h---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----H
Q 004425 498 DVIVGNALITMYAKCGSIDGAFQIFKGISD--RD-I---VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI----S 567 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 567 (754)
....+..+...+.+.|++++|...|+++.+ |+ . .+|..+..+|...|++++|+..++++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 344555566667777777777777776643 22 1 3455666677777777777777777776 334322 3
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 004425 568 ILGVLQACIYS--------GLSEGGICLFNEIEQIYGLRPIL-EHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRT 638 (754)
Q Consensus 568 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 638 (754)
+..+..++... |++++|.+.|+.+... .|+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 44444444433 5566677777666542 2322 111111110 0000000 011224
Q ss_pred HHHHHHhcCChHHHHHHHHHhhccCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 639 LVSVSKLMANSKFSILASKRLLDLEPKD---AGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 639 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+...+...|+.++|...++++++..|++ +.++..++.+|...|++++|...++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667788899999999999999997765 468999999999999999999999987654
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.75 E-value=3.9e-07 Score=89.13 Aligned_cols=237 Identities=11% Similarity=0.039 Sum_probs=154.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPD--PVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAF 519 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 519 (754)
.|++..++.-.+ ... ..+. ......+.+++...|..+.+ ..++.+.. .|.......+...+...++-+.+.
T Consensus 14 ~G~Y~~~i~e~~-~~~--~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKS--FSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp TT-HHHHCHHHH-CHT--STCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred hhhHHHHHHHhh-ccC--CCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 566666665444 221 1222 23344556666666765532 23333333 555555555555444435566666
Q ss_pred HHHhccC-CCC---hhHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004425 520 QIFKGIS-DRD---IVSWNA-MLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQI 594 (754)
Q Consensus 520 ~~~~~~~-~~~---~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 594 (754)
.-+++.. ++. -.++.. ....+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~- 159 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ- 159 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 6665443 221 122222 224456679999999988652 3456677788899999999999999999965
Q ss_pred hCCCCCccHHH----HHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc
Q 004425 595 YGLRPILEHFA----CMVDLLGRAGRLSEAMNLINSSP--FSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG 668 (754)
Q Consensus 595 ~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 668 (754)
+..| .+.. +.+..+.-...+.+|.-+|+++. ..+++.+.+.+..+....|++++|+.+++++++.+|+++.
T Consensus 160 --~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 160 --IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp --CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred --cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 3333 3333 33444433457999999999883 3468888899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCc-hHHHHHHHHHhh
Q 004425 669 SFILVSNMYAGQGML-DEAAKVRTTMND 695 (754)
Q Consensus 669 ~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 695 (754)
+...++-+....|+. +.+.+.+.+++.
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 999999999999998 667788888765
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.73 E-value=2.3e-05 Score=81.27 Aligned_cols=253 Identities=11% Similarity=-0.022 Sum_probs=152.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH-HHHH---HHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPV-TFSR---LLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDG 517 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~-~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 517 (754)
.|++++|.+++++..+. .|+.. .+.. ........+....+.+.+.. .....+........+...+...|++++
T Consensus 56 ~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 56 AGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred cCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 78888888888887765 34443 3321 11111223444444444443 111112223344455667888899999
Q ss_pred HHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004425 518 AFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGF-APDD--ISILGVLQACIYSGLSEGGICLFNEI 591 (754)
Q Consensus 518 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~ 591 (754)
|.+.+++..+ .+...+..+...|...|++++|+.++++...... .|+. ..|..+...+...|++++|..++++.
T Consensus 133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 133 AEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9988888754 3456677788888888999999999888876422 1222 24556777888889999999999887
Q ss_pred HHHhCCCCCccHH-H--HHHHHHhhcCCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Q 004425 592 EQIYGLRPILEHF-A--CMVDLLGRAGRLSEAMNL---INS---S-PFSESPLLWRTLVSVSKLMANSKFSILASKRLLD 661 (754)
Q Consensus 592 ~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~---~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 661 (754)
.......+..... + .+...+...|....+.++ ... . +.............++...|+.+.|...++.+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 213 IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4311111111111 1 233333444533333332 111 1 1111223333566677788899999999888765
Q ss_pred cCCC---------CcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 662 LEPK---------DAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 662 ~~p~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
..-. ........+.++...|++++|.+.+......+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 293 RASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3211 34566778888999999999999998876543
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.8e-05 Score=78.27 Aligned_cols=175 Identities=11% Similarity=0.058 Sum_probs=101.4
Q ss_pred HHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 004425 507 TMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGI 585 (754)
Q Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~ 585 (754)
.+|.+.++++.|...|.+...+... -....+....++++...+...- +.|+.. -...-...+.+.|++..|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHH
Confidence 4555556666666666654221100 1111223344455554444443 334432 2222355666777777777
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Q 004425 586 CLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLDLE 663 (754)
Q Consensus 586 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 663 (754)
..|.+++. ..+-|...|....-+|.+.|.+.+|++-.+.. ...|+ ...|.--+.++....+++.|...|++.++++
T Consensus 379 ~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 379 KHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777766 22444566777777777777777777665543 23333 3334333445556678999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHH
Q 004425 664 PKDAGSFILVSNMYAGQGMLDEAAKVR 690 (754)
Q Consensus 664 p~~~~~~~~l~~~~~~~g~~~~a~~~~ 690 (754)
|++......+.+++..+...+...++.
T Consensus 457 p~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 457 PSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred chhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 998888887777777643333333333
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.73 E-value=3.2e-07 Score=79.93 Aligned_cols=123 Identities=11% Similarity=0.021 Sum_probs=87.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 004425 551 LLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PF 629 (754)
Q Consensus 551 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 629 (754)
.+|++.++ +.|+. +..+..++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45566665 55654 44556677777888888888877754 22334566777777777888888888777755 33
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 630 SE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 630 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
.| ++..|..+..++...|+.++|+..+++++++.|+++..+..++++...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34 677888888888888888888888888888888888888777776543
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.71 E-value=1.1e-06 Score=80.96 Aligned_cols=119 Identities=12% Similarity=0.096 Sum_probs=93.1
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hHHH
Q 004425 578 SGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVS-KLMAN--SKFS 652 (754)
Q Consensus 578 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~a 652 (754)
.++.+++...++...+ .-+.+...|..+...|...|++++|...+++. ...| ++..+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4555666666666655 33445667778888888888888888888765 3445 688888888764 56676 5999
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 653 ILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 653 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
.++++++++.+|+++.++..++..+.+.|++++|...++++.+...
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999876443
No 105
>PLN02789 farnesyltranstransferase
Probab=98.66 E-value=6.7e-06 Score=81.59 Aligned_cols=211 Identities=9% Similarity=-0.003 Sum_probs=137.4
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhccCC---CChhHHHHHHHHHHHcCCh--HHHHH
Q 004425 478 ACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCG-SIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLG--KGALL 551 (754)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~ 551 (754)
+..++|.....++++.+ +-+..+|+....++.+.| ++++++..++++.+ .+..+|+...-.+.+.|+. ++++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 34455555555555433 222334444444455555 46777777776643 3445666555455555553 66788
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhc---CC----HHHHHHH
Q 004425 552 LFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRA---GR----LSEAMNL 623 (754)
Q Consensus 552 ~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~ 623 (754)
+++++++ ..| |..+|.....++.+.|+++++++.++++.+. . .-+...|+....++.+. |. .++++++
T Consensus 130 ~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 130 FTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 8888887 445 4467888888888888888888888888762 2 23344555444444443 22 2466777
Q ss_pred HH-hCCCCC-CHHHHHHHHHHHHhc----CChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcC----------------
Q 004425 624 IN-SSPFSE-SPLLWRTLVSVSKLM----ANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQG---------------- 681 (754)
Q Consensus 624 ~~-~~~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------- 681 (754)
.. .+...| |...|+.+.+.+... ++..+|...+.+++..+|+++.+...|+++|+...
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~ 285 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEE 285 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccc
Confidence 64 444455 688999999988774 45577999999999999999999999999998743
Q ss_pred --CchHHHHHHHHH
Q 004425 682 --MLDEAAKVRTTM 693 (754)
Q Consensus 682 --~~~~a~~~~~~m 693 (754)
..++|.++++.+
T Consensus 286 ~~~~~~a~~~~~~l 299 (320)
T PLN02789 286 LSDSTLAQAVCSEL 299 (320)
T ss_pred cccHHHHHHHHHHH
Confidence 235677777766
No 106
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.66 E-value=4.9e-07 Score=76.93 Aligned_cols=97 Identities=13% Similarity=0.036 Sum_probs=86.2
Q ss_pred CccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 600 ILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 600 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
+.+..-.+...+...|++++|.++|+-. ...| +...|..|..+|+..|++++|+.+|.++..++|+|+.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455667778888999999999999865 3445 7889999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHhhC
Q 004425 678 AGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 678 ~~~g~~~~a~~~~~~m~~~ 696 (754)
...|+.++|.+.|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999987653
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=3.2e-08 Score=60.86 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=27.7
Q ss_pred CCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCC
Q 004425 189 GFENNVFVGTSLISMYFHSGCFREAENVFRGLA 221 (754)
Q Consensus 189 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 221 (754)
|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
No 108
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.62 E-value=0.00097 Score=67.44 Aligned_cols=178 Identities=15% Similarity=0.105 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHH
Q 004425 445 EEDVMVLFSQQRLA-GMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAA-DVIVGNALITMYAKCGSIDGAFQIF 522 (754)
Q Consensus 445 ~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 522 (754)
.+.....++++... ...|+ .+|..+++.-.+..-+..|+.+|.++.+.+..+ ++.++++++..||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 45556666666543 23343 467788888888889999999999999988777 88899999998875 7889999999
Q ss_pred hccCC--CChhH-HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC-
Q 004425 523 KGISD--RDIVS-WNAMLSAYALHGLGKGALLLFEEMKREGFAPDD--ISILGVLQACIYSGLSEGGICLFNEIEQIYG- 596 (754)
Q Consensus 523 ~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~- 596 (754)
+.-.+ +|... -...+.-+...|+-..|..+|++.+..++.||. ..|..+|.--+.-|++..+.++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 86543 45443 345677778889999999999999988778776 4899999988999999999998888776444
Q ss_pred -CCCCccHHHHHHHHHhhcCCHHHHHHHH
Q 004425 597 -LRPILEHFACMVDLLGRAGRLSEAMNLI 624 (754)
Q Consensus 597 -~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 624 (754)
..+...+-..+++-|.-.+....-..-+
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c~~~el 533 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPCSLDEL 533 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccccHHHH
Confidence 4455555666677776666554443333
No 109
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=1.5e-05 Score=73.72 Aligned_cols=275 Identities=12% Similarity=0.072 Sum_probs=158.0
Q ss_pred HHhCCCHHHHHHHHhcCCCC---ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhcccchH
Q 004425 406 YAKGGDLKSARMLLDGFSCK---YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSR-LLSLSASQACLV 481 (754)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~ 481 (754)
+.+..++++|.+++..-.++ +....+.+.-.|.. ..++..|-..++++-.. .|...-|.. -...+-+.+.+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~--~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYR--LQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccH
Confidence 34444444444444433222 22233333344444 55555555555555443 344333321 122334445555
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHH----HHHhcCCHHHHHHHHhccC-CCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004425 482 RGRSLHAYSIKTGYAADVIVGNALIT----MYAKCGSIDGAFQIFKGIS-DRDIVSWNAMLSAYALHGLGKGALLLFEEM 556 (754)
Q Consensus 482 ~a~~~~~~~~~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 556 (754)
.|..+...|... ++ ..+..+. ..-..+++..+..+.++.. +.+..+.+.......+.|+++.|++-|+..
T Consensus 96 DALrV~~~~~D~---~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 96 DALRVAFLLLDN---PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred HHHHHHHHhcCC---HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 555555555331 11 1111111 1223466666667777666 345555555555566777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-------------c---------------cHHHHHH
Q 004425 557 KREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-------------L---------------EHFACMV 608 (754)
Q Consensus 557 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-------------~---------------~~~~~l~ 608 (754)
.+-+---....|+..+.- .+.|+++.|+++..++++ .|++.. + +.++.-.
T Consensus 171 lqvsGyqpllAYniALaH-y~~~qyasALk~iSEIie-RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIE-RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHH-hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 663322234455544433 344677777777777766 344321 1 1233333
Q ss_pred HHHhhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCch
Q 004425 609 DLLGRAGRLSEAMNLINSSPF----SESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLD 684 (754)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 684 (754)
..+.+.|+++.|.+.+-.||- +.|+++...+.-. -..++.-.+.+-++=+++++|-.++++-.+.-+|++..-++
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHh
Confidence 456788999999999999853 2377777655432 23466777888888899999988889999999999999999
Q ss_pred HHHHHHHH
Q 004425 685 EAAKVRTT 692 (754)
Q Consensus 685 ~a~~~~~~ 692 (754)
-|..++.+
T Consensus 328 lAADvLAE 335 (459)
T KOG4340|consen 328 LAADVLAE 335 (459)
T ss_pred HHHHHHhh
Confidence 99988763
No 110
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.57 E-value=0.00024 Score=73.67 Aligned_cols=192 Identities=13% Similarity=0.045 Sum_probs=96.9
Q ss_pred HHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CCh--hHHHHHHHHHHH
Q 004425 470 LLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD-----RDI--VSWNAMLSAYAL 542 (754)
Q Consensus 470 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~li~~~~~ 542 (754)
+...+...|++++|...++...+.. +.+...+..+...|...|++++|...+++... ++. ..|..+...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3344455555666666665555543 33345556666666677777777777665543 121 234456666777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-HHH-H--HHHHHHHhcCCHHHHHHHHHHHHHH--hCCCCCccHH--HHHHHHHhhc
Q 004425 543 HGLGKGALLLFEEMKREGFAPDD-ISI-L--GVLQACIYSGLSEGGICLFNEIEQI--YGLRPILEHF--ACMVDLLGRA 614 (754)
Q Consensus 543 ~g~~~~A~~~~~~m~~~g~~p~~-~t~-~--~ll~a~~~~g~~~~a~~~~~~~~~~--~~~~p~~~~~--~~l~~~~~~~ 614 (754)
.|++++|+.++++.......+.. ... . .++.-+...|..+.+..+ +.+... .........+ ...+.++...
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 77777777777776542211111 111 1 222333333433333222 111110 0111111111 2456666777
Q ss_pred CCHHHHHHHHHhCC--CCC---C------HHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Q 004425 615 GRLSEAMNLINSSP--FSE---S------PLLWRTLVSVSKLMANSKFSILASKRLLDLE 663 (754)
Q Consensus 615 g~~~~A~~~~~~~~--~~p---~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 663 (754)
|+.++|...++.+. ... . ....-...-++...|+.+.|.+.+..++.+-
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 78888877776541 001 1 1111222334567788888888888877653
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.57 E-value=1.2e-06 Score=76.29 Aligned_cols=107 Identities=11% Similarity=-0.051 Sum_probs=91.4
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Q 004425 586 CLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLE 663 (754)
Q Consensus 586 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 663 (754)
.++++.. .+.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444443 34455 3567888999999999999999875 4445 79999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 664 PKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 664 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
|+++..+..++.++...|++++|...++......
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999876643
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.56 E-value=7.3e-06 Score=90.89 Aligned_cols=197 Identities=14% Similarity=0.122 Sum_probs=125.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004425 498 DVIVGNALITMYAKCGSIDGAFQIFKGISD--------RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISIL 569 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 569 (754)
+...|-..+......++.++|++++++... .-...|.++++.-...|.-+...++|++..+ +---...|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHHHH
Confidence 444555555556666666666666665532 1123566666666666666666777777766 322234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHh
Q 004425 570 GVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE---SPLLWRTLVSVSKL 645 (754)
Q Consensus 570 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~ 645 (754)
.|+..|.+.+.+++|.++++.|.++++ -....|..+++.+.++.+-++|..++++. ..-| ......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 677777777777777777777777544 45566777777777777777777776543 2222 23444445555566
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 646 MANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
+|+.+++..+|+.++.-.|.-...|..+++.-.+.|..+.++.+|++..+.++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 77777777777777777777777777777777777777777777777665544
No 113
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=9.7e-08 Score=58.75 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=22.9
Q ss_pred cCCCChhHHHHHHHHHHhcCChHHHHHHHHccC
Q 004425 290 GVVREISVGNAIVTMYGKHGMSEEAERMFDAIS 322 (754)
Q Consensus 290 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 322 (754)
|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777776663
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.52 E-value=0.00059 Score=80.58 Aligned_cols=257 Identities=11% Similarity=-0.031 Sum_probs=150.0
Q ss_pred HHHhcCChhHHHHHHHHhHhcCcccCh----hhHHHHHHHhcccCChHHHHHHHHHHHHh----CC-CcchhHHHHHHHH
Q 004425 335 GYVRSGHGGKAINGFLEFLDLGICCDS----SCLATVIDGCSVCSNLELGLQLHGFAIKH----GY-LSDVRLGTALVDI 405 (754)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~ 405 (754)
.+...|++++|...+++..+.-...+. ...+.+...+...|+++.|...+.+.... |. .........+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 345667777777777666542111111 12334444456677777777777666542 11 1112344555566
Q ss_pred HHhCCCHHHHHHHHhcCCC-------CC----hhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHH
Q 004425 406 YAKGGDLKSARMLLDGFSC-------KY----TAEFNAILSGFMEKIADDEEDVMVLFSQQRLA--GMEPD--PVTFSRL 470 (754)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~--g~~p~--~~~~~~l 470 (754)
+...|+++.|...+++... .+ ...+..+...+.. .|++++|...+++.... ...+. ...+..+
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE--WARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH--hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 6777777777776654321 01 1122233344555 78888888887776542 11122 2334445
Q ss_pred HHHHhcccchHHHHHHHHHHHHhCCCC-chhHH-----HHHHHHHHhcCCHHHHHHHHhccCCCCh-------hHHHHHH
Q 004425 471 LSLSASQACLVRGRSLHAYSIKTGYAA-DVIVG-----NALITMYAKCGSIDGAFQIFKGISDRDI-------VSWNAML 537 (754)
Q Consensus 471 l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li 537 (754)
.......|+.+.|...+..+....-.. ....+ ...+..+...|+.+.|...+.....+.. ..+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 556677888888888887775431111 10001 1122445668899999998877654321 1134566
Q ss_pred HHHHHcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 538 SAYALHGLGKGALLLFEEMKRE----GFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 538 ~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
.++...|++++|...+++.... |..++. .+...+..++...|+.++|...+.+..+
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788889999999998887753 333322 3566666788889999999999988877
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.51 E-value=6.1e-06 Score=75.52 Aligned_cols=122 Identities=14% Similarity=0.105 Sum_probs=61.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCh
Q 004425 572 LQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS--PFSESPLLWRTLVSVSKLMANS 649 (754)
Q Consensus 572 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~ 649 (754)
-.++...|+-+....+...... ....+......++....+.|++.+|+..+++. +.++|...|+.+..+|-+.|+.
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccCh
Confidence 3344444444444444444322 12222223333555555555555555555544 2333555555555555555555
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 650 KFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 650 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++|...+.+++++.|+++..+.+|+..|.-.|+.++|+.++.....
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555555443
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=4.9e-06 Score=86.46 Aligned_cols=184 Identities=17% Similarity=0.124 Sum_probs=104.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004425 494 GYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQ 573 (754)
Q Consensus 494 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 573 (754)
+++|--..-..+...+.+.|-..+|..+|++. ..|.-.|.+|+..|+..+|..+..+-.+ -+||...|..+++
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555555666778888888888888888875 4577778888888888888888777776 5677778887777
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChHH
Q 004425 574 ACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINS-SPFSE-SPLLWRTLVSVSKLMANSKF 651 (754)
Q Consensus 574 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~ 651 (754)
......-+++|.++++..... .-..+.....+.++++++.+.++. +...| -..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 766666666777666654331 000111111223444444444432 22222 23444444444444444444
Q ss_pred HHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 004425 652 SILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 652 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
|..+|.....++|++...|.+++-+|.+.|+-.+|.+.+++
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 44444444444444444444444444444444444444443
No 117
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.48 E-value=0.00052 Score=65.15 Aligned_cols=201 Identities=7% Similarity=-0.012 Sum_probs=95.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
+|+...|++....+++- ...|...|..-..+|...|.+..|..=+..+.+..- -+....--+-..+...|+.+.++..
T Consensus 168 ~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred CCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHH
Confidence 45555555555555543 133444444445555566666655555444444332 2233333445556666777777666
Q ss_pred HhccCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC
Q 004425 522 FKGISD--RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRP 599 (754)
Q Consensus 522 ~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 599 (754)
.++..+ ||... +|...+...+..+.++.|.+ ....+.|.++++-.+...+ ..|
T Consensus 246 iRECLKldpdHK~------Cf~~YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk---~ep 300 (504)
T KOG0624|consen 246 IRECLKLDPDHKL------CFPFYKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLK---NEP 300 (504)
T ss_pred HHHHHccCcchhh------HHHHHHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHh---cCC
Confidence 666544 33221 11111122222222222222 1122334444444444322 222
Q ss_pred C-----ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcch
Q 004425 600 I-----LEHFACMVDLLGRAGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGS 669 (754)
Q Consensus 600 ~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 669 (754)
. ...+..+-.++...|++-+|++...++ ...|| ..++..-..++.....++.|+.-|+++.+.+|+|..+
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 2 122334445555556666666555543 33443 5555555566666666666666666666666665443
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=6.6e-05 Score=75.02 Aligned_cols=135 Identities=21% Similarity=0.182 Sum_probs=64.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCH
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPDDISIL-GVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRL 617 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 617 (754)
+...|++++|+..++.++. -.||...|. .....+...++.++|.+.++++.. ..|+ ....-.+..+|.+.|+.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCCh
Confidence 3344555555555555544 334443322 223344555555555555555533 2333 22333455555555555
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 618 SEAMNLINSS--PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 618 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.+|+..++.. ..+.|+..|..|..+|...|+..++..+ .+..|+..|+|++|.......++
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHHHH
Confidence 5555555433 2222455555555555555554444433 23344555556666665555544
Q ss_pred C
Q 004425 696 L 696 (754)
Q Consensus 696 ~ 696 (754)
+
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 3
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=3.9e-05 Score=80.07 Aligned_cols=217 Identities=12% Similarity=0.117 Sum_probs=176.5
Q ss_pred CCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004425 391 GYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRL 470 (754)
Q Consensus 391 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 470 (754)
+++|--..-..+...+..+|-...|..+|+++ ..|.-.|..|+. .|+..+|..+..+..++ +||...|..+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~--lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLL--LGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHH--hcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 34555566677888899999999999999875 468888999999 99999999999888874 8999999999
Q ss_pred HHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---ChhHHHHHHHHHHHcCChH
Q 004425 471 LSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR---DIVSWNAMLSAYALHGLGK 547 (754)
Q Consensus 471 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 547 (754)
.+...+..-+++|.++.+..... .-..+.......++++++.+.|+.-.+- -..+|-....+..+.++++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 99988888899999888876543 1122223334478999999999876543 3468888888999999999
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHh
Q 004425 548 GALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINS 626 (754)
Q Consensus 548 ~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (754)
.|.+.|..-.. ..||.. .|+.+-.+|.+.|+-.+|...+++..+ .. .-+-..|...+-...+.|.+++|++.+.+
T Consensus 537 ~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 537 AAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999988 789875 899999999999999999999999988 56 44445666777788899999999999876
Q ss_pred C
Q 004425 627 S 627 (754)
Q Consensus 627 ~ 627 (754)
+
T Consensus 613 l 613 (777)
T KOG1128|consen 613 L 613 (777)
T ss_pred H
Confidence 6
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.45 E-value=1.9e-05 Score=72.88 Aligned_cols=154 Identities=15% Similarity=0.171 Sum_probs=116.9
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 004425 506 ITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGG 584 (754)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 584 (754)
+-.|.+.|+++......+.+..+. ..+...++.++++..+++.++ ..|+ ...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456888888887765554332221 112235677888888888887 4454 45888888899999999999
Q ss_pred HHHHHHHHHHhCCCC-CccHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004425 585 ICLFNEIEQIYGLRP-ILEHFACMVDLL-GRAGR--LSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKR 658 (754)
Q Consensus 585 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 658 (754)
...|++..+ +.| +...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999866 344 567788888864 67777 59999999876 4445 688899999999999999999999999
Q ss_pred hhccCCCCcchHHH
Q 004425 659 LLDLEPKDAGSFIL 672 (754)
Q Consensus 659 ~~~~~p~~~~~~~~ 672 (754)
+++++|.+..-+..
T Consensus 170 aL~l~~~~~~r~~~ 183 (198)
T PRK10370 170 VLDLNSPRVNRTQL 183 (198)
T ss_pred HHhhCCCCccHHHH
Confidence 99999886655443
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.44 E-value=2.7e-05 Score=85.41 Aligned_cols=137 Identities=9% Similarity=-0.086 Sum_probs=104.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHH
Q 004425 529 DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFAC 606 (754)
Q Consensus 529 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 606 (754)
++..+-.|.....+.|++++|+.+++...+ +.||.. .+..+...+.+.+++++|...+++... ..|+ ..+...
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 466677777788888888888888888888 778775 667777788888888888888888855 3444 566777
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchH
Q 004425 607 MVDLLGRAGRLSEAMNLINSSP-FSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSF 670 (754)
Q Consensus 607 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 670 (754)
+..++.+.|++++|.++|+++. ..| ++.+|.++..++...|+.++|..+|+++++...+....|
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 8888888888888888888762 233 477888888888888888888888888888765544443
No 122
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.40 E-value=0.0057 Score=66.01 Aligned_cols=535 Identities=14% Similarity=0.080 Sum_probs=262.0
Q ss_pred ccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHH--HccCChhHHHHHhccCCC---CChhhHHHHHHHHhcCCChhHH
Q 004425 69 IGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLY--AKFNRLDVAQKLFDGMLV---RSAITWTSLIKGYLDDGDYESV 143 (754)
Q Consensus 69 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~--~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 143 (754)
...+++..|......+.+.. |+ ..|..++.++ .|.|+.++|..+++.... .|..|...+-.+|...+..++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34567777777777766543 23 2345555555 478899999988887632 3778888999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcC----------CHhHH
Q 004425 144 LGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSG----------CFREA 213 (754)
Q Consensus 144 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------~~~~A 213 (754)
..+|++.... -|+......++.++.+.+++.+-.++--++.+ .++.+.+.+=++++.+...- -..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999988754 56677888888888888887766655555554 23445555544555444321 12234
Q ss_pred HHHhccCCCCC--cch---HHHHHHHHHHcCChhHHHHHHH-HhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHH
Q 004425 214 ENVFRGLAYKD--VRC---VNFMILEYNKAGESEMAFHVFV-HLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAV 287 (754)
Q Consensus 214 ~~~~~~~~~~~--~~~---~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 287 (754)
.+.++.+.+.+ ..+ .-.-...+-..|++++|++++. ...+.-..-+...-+--+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44444444333 111 1111223445677788887773 33333222233333344555666677777777777777
Q ss_pred HhcCCCChhHHHHHHHHHHh----------------cCChHHHHHHHHccCC-CCchhHHHHHHHH---HhcCChhHHHH
Q 004425 288 KFGVVREISVGNAIVTMYGK----------------HGMSEEAERMFDAISE-RNLISWTALISGY---VRSGHGGKAIN 347 (754)
Q Consensus 288 ~~g~~~~~~~~~~li~~~~~----------------~g~~~~A~~~~~~~~~-~~~~~~~~li~~~---~~~g~~~~A~~ 347 (754)
..|... |...++.+.+ .+..+...+..++... .....|-+-+..+ -.-|+.++++.
T Consensus 254 ~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 254 EKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred HhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHH
Confidence 766332 2222222111 1122222222211111 1112222222222 23355555544
Q ss_pred HHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCCh
Q 004425 348 GFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYT 427 (754)
Q Consensus 348 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 427 (754)
.|-+-. |-+| .|..=+..|...=..+.-..++....... ++...-...+..+.-.-+...+.-.+..|+....
T Consensus 330 ~y~~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i 402 (932)
T KOG2053|consen 330 YYFKKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSI 402 (932)
T ss_pred HHHHHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHH
Confidence 433211 1111 12222222222222222222222222110 0000000000000000000111111222222222
Q ss_pred hhHH-HHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHhcccchHH---HHHHHHHHHHhC
Q 004425 428 AEFN-AILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPV---------TFSRLLSLSASQACLVR---GRSLHAYSIKTG 494 (754)
Q Consensus 428 ~~~~-~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~ 494 (754)
..+. .++..|.+ . +. ...++-|+.. +.+.++..+-+.++... |.-+++.-....
T Consensus 403 ~a~~~kl~~~ye~--g------ls-----~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s 469 (932)
T KOG2053|consen 403 LAYVRKLKLTYEK--G------LS-----LSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS 469 (932)
T ss_pred HHHHHHHHHHHhc--c------cc-----ccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC
Confidence 2222 22222222 0 00 0012233332 34566777777777653 333333333322
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHH
Q 004425 495 YAADVIVGNALITMYAKCGSIDGAFQIFKGISDR----DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD--ISI 568 (754)
Q Consensus 495 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~ 568 (754)
+.|..+--.+|..|+-.|-+..|.++|+.+.-+ |...|- +..-+...|++..+...++.... +--+. .+-
T Consensus 470 -~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lk--fy~~~~kE~~ 545 (932)
T KOG2053|consen 470 -PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLK--FYDSSLKETP 545 (932)
T ss_pred -CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHH--HHhhhhhhhH
Confidence 345555566889999999999999999988643 333332 23445566788777777766554 11111 122
Q ss_pred HHHHHHHHhcCCHHHHH---HHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCC--CHHHHHHH
Q 004425 569 LGVLQACIYSGLSEGGI---CLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSE--SPLLWRTL 639 (754)
Q Consensus 569 ~~ll~a~~~~g~~~~a~---~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l 639 (754)
..+..||. .|.+.+.. .+-+++... .-.....+-+..++.++..++.++-...+..|..+| |.+.|.+|
T Consensus 546 eyI~~AYr-~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~l~~~e~~I~w~~L 619 (932)
T KOG2053|consen 546 EYIALAYR-RGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCNADRGTQLLKLLESMKLPPSEDRIQWVSL 619 (932)
T ss_pred HHHHHHHH-cCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccccCcchhhcccccc
Confidence 22333333 34444433 333333321 111123345577888888999999888888876544 45555554
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.39 E-value=0.0037 Score=63.45 Aligned_cols=124 Identities=13% Similarity=0.153 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhcCC-----CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHH
Q 004425 397 RLGTALVDIYAKGGDLKSARMLLDGFS-----CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTF-SRL 470 (754)
Q Consensus 397 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~l 470 (754)
-+|..+++.-.+..-+..|+.+|.+.. ..++...++++.-||. ++.+-|.++|+--.+. -+|...| ...
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs---kD~~~AfrIFeLGLkk--f~d~p~yv~~Y 441 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS---KDKETAFRIFELGLKK--FGDSPEYVLKY 441 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc---CChhHHHHHHHHHHHh--cCCChHHHHHH
Confidence 344455555555555555555555443 1133445555555554 7777788887766554 3444333 455
Q ss_pred HHHHhcccchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 004425 471 LSLSASQACLVRGRSLHAYSIKTGYAAD--VIVGNALITMYAKCGSIDGAFQIFKGI 525 (754)
Q Consensus 471 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 525 (754)
++-+...++-..++.+|+.++..++.++ ..+|..+++.=..-|++..+.++-+++
T Consensus 442 ldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 442 LDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 6666677777777777777777655543 456666666666666666666655443
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.39 E-value=4e-05 Score=84.07 Aligned_cols=132 Identities=17% Similarity=0.084 Sum_probs=116.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHH
Q 004425 561 FAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL-EHFACMVDLLGRAGRLSEAMNLINSS-PFSES-PLLWR 637 (754)
Q Consensus 561 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~ 637 (754)
+..+...+..|.....+.|.+++|..+++.+.+ +.|+. .....++..+.+.+++++|+..+++. ...|+ .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 555677889999999999999999999999955 67774 46678999999999999999999876 55664 66777
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 638 TLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 638 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.+..++...|++++|..+|+++++.+|+++.++..++.++...|+.++|...|++.-+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788888999999999999999999999999999999999999999999999998844
No 125
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.38 E-value=2.1e-05 Score=75.99 Aligned_cols=182 Identities=12% Similarity=-0.004 Sum_probs=128.8
Q ss_pred CCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-h---hH
Q 004425 462 PDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAAD---VIVGNALITMYAKCGSIDGAFQIFKGISD--RD-I---VS 532 (754)
Q Consensus 462 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~ 532 (754)
.....+..+...+...|+++.|...++.+.+.. +.+ ...+..+...|.+.|++++|...|+.+.+ |+ . .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 344567777888999999999999999998754 222 24667788999999999999999999854 32 2 24
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccH
Q 004425 533 WNAMLSAYALH--------GLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEH 603 (754)
Q Consensus 533 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 603 (754)
+..+..++... |++++|.+.|+++.+ ..|+.. ....+... .. .. .... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~-~~---~~------~~~~---------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRM-DY---LR------NRLA---------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHH-HH---HH------HHHH---------HH
Confidence 56666666654 789999999999998 456653 22211111 10 00 0000 01
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 604 FACMVDLLGRAGRLSEAMNLINSS----PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
...+...|.+.|++++|+..+++. +..| .+..|..+..++...|+.++|...++.+....|+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 235677888999999999988765 3333 3678889999999999999999988887766553
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=9.2e-05 Score=74.02 Aligned_cols=121 Identities=19% Similarity=0.179 Sum_probs=102.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChH
Q 004425 573 QACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMANSK 650 (754)
Q Consensus 573 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 650 (754)
-.+...|.+++|+..++.+.. ..+-|.......++.+.+.++.++|.+.++++ ...|+ ...|-++.+++.+.|+..
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 345567889999999999866 34445556668889999999999999999876 55665 788889999999999999
Q ss_pred HHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 651 FSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 651 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+|++.++....-+|+|+..|..|+..|...|+..+|...+.++-.
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887754
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.35 E-value=0.00013 Score=81.58 Aligned_cols=240 Identities=13% Similarity=0.152 Sum_probs=178.5
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHhcccchHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 004425 452 FSQQRLAGMEPDP-VTFSRLLSLSASQACLVRGRSLHAYSIKT-GYAA---DVIVGNALITMYAKCGSIDGAFQIFKGIS 526 (754)
Q Consensus 452 ~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 526 (754)
|++.... .||. ..|...|.-..+.++.+.|+++.+++++. ++.- -..+|.+++++-..-|.-+...++|+++.
T Consensus 1447 ferlvrs--sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRS--SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhc--CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 3444443 4665 67888888889999999999999998864 2221 24567888888888888899999999987
Q ss_pred C-CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHH
Q 004425 527 D-RDI-VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHF 604 (754)
Q Consensus 527 ~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 604 (754)
+ .|. ..|..|...|.+.++.++|.++++.|.+. +.-....|...+..+.+...-+.|..++.++.+-..-.-.+...
T Consensus 1525 qycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1525 QYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred HhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 6 343 46888999999999999999999999975 44455689999999999999999999999987621111134455
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccC--CCCcch-HHHHHHHHHh
Q 004425 605 ACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLE--PKDAGS-FILVSNMYAG 679 (754)
Q Consensus 605 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~-~~~l~~~~~~ 679 (754)
.-.+.+-.+.|+.+++..+|+.. ...| ....|+.++..-.++|+.+.++.+|++++.+. |..... |......--.
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 66777778999999999999866 3334 68899999999999999999999999999864 443333 3333222233
Q ss_pred cCCchHHHHHHHHHh
Q 004425 680 QGMLDEAAKVRTTMN 694 (754)
Q Consensus 680 ~g~~~~a~~~~~~m~ 694 (754)
.|+-+.++.+-.+..
T Consensus 1684 ~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1684 HGDEKNVEYVKARAK 1698 (1710)
T ss_pred cCchhhHHHHHHHHH
Confidence 466555555544443
No 128
>PLN02789 farnesyltranstransferase
Probab=98.35 E-value=5.2e-05 Score=75.35 Aligned_cols=187 Identities=9% Similarity=0.028 Sum_probs=139.2
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC--C-ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC
Q 004425 505 LITMYAKCGSIDGAFQIFKGISD--R-DIVSWNAMLSAYALHG-LGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSG 579 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 579 (754)
+-..+.+.++.++|+...+.+.+ | +..+|+.....+...| ++++++..++++.+. .|+. .+|+.....+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcC
Confidence 33345556788889999888765 3 3457777777777777 579999999999984 4544 46766666666666
Q ss_pred CH--HHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCh---
Q 004425 580 LS--EGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLM---ANS--- 649 (754)
Q Consensus 580 ~~--~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~--- 649 (754)
.. +++..+++++.+ .-+-+...|....-++.+.|++++|++.++++ ...| |..+|+.....+... |..
T Consensus 121 ~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 121 PDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred chhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 53 678888888865 23334667888888899999999999999987 3333 788898887776654 222
Q ss_pred -HHHHHHHHHhhccCCCCcchHHHHHHHHHhc----CCchHHHHHHHHHhh
Q 004425 650 -KFSILASKRLLDLEPKDAGSFILVSNMYAGQ----GMLDEAAKVRTTMND 695 (754)
Q Consensus 650 -~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 695 (754)
+.+.....++++++|+|..+|..++.+|... ++..+|.+...+...
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 4677778899999999999999999999883 456778888776544
No 129
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=7.5e-05 Score=75.96 Aligned_cols=213 Identities=13% Similarity=0.086 Sum_probs=111.2
Q ss_pred cccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHH
Q 004425 372 SVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDV 448 (754)
Q Consensus 372 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A 448 (754)
.+.|++..|.-.|+..++.. +-+...|..|.......++-..|+..+++.. ..|....-+|.-.|.. .|.-.+|
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN--eg~q~~A 372 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTN--EGLQNQA 372 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh--hhhHHHH
Confidence 45666777777777666654 4455566666666666666666666665544 3344444455556666 6666666
Q ss_pred HHHHHHHHHcCCC--------CCHHHHHHHHHHHhcccchHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004425 449 MVLFSQQRLAGME--------PDPVTFSRLLSLSASQACLVRGRSLHAYSI-KTGYAADVIVGNALITMYAKCGSIDGAF 519 (754)
Q Consensus 449 ~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~ 519 (754)
+..++.-+....+ ++..+-.. +.......+....++|-++. ..+..+|+.++..|.-.|--.|+++.|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 6666665443100 00000000 11111122223333333332 3343455555666666666666666666
Q ss_pred HHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 004425 520 QIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEI 591 (754)
Q Consensus 520 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~ 591 (754)
..|+.... .|...||-|...++...+.++|+.-|++.++ ++|+.+ ....|.-+|...|.+++|.++|=.+
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 66665532 2445566666666666666666666666665 556553 3344445556666666665555443
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.32 E-value=7.2e-05 Score=68.70 Aligned_cols=119 Identities=13% Similarity=0.038 Sum_probs=64.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMAN 648 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 648 (754)
.+....+.|++.+|...+.+... .-++|.+.|+.+.-+|.+.|++++|..-|.+. .+.| ++...+.+...+...|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 44444455555555555555543 33444455555555555555555555444332 2222 45555566666666666
Q ss_pred hHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 004425 649 SKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRT 691 (754)
Q Consensus 649 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 691 (754)
.+.|+.++..+....+.|...-..|+.+....|++++|..+..
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 6666666666666555556666666666666666666665543
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.29 E-value=1.6e-05 Score=80.44 Aligned_cols=122 Identities=12% Similarity=0.143 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 004425 568 ILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKL 645 (754)
Q Consensus 568 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 645 (754)
...++..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| |...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 344555666667777777777777652 243 4445677777777777777777654 2233 67777788888999
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 646 MANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
.++.+.|+.+++++.++.|++..+|..|+.+|...|++++|+-.+..+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998885
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.28 E-value=9e-06 Score=70.63 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=72.6
Q ss_pred cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 602 EHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
.....++..+...|++++|.+.++.. ...| ++..|..+...+...|+++.|...++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 34556666666777777777777654 2233 677788888888888888888888888888888888888888888888
Q ss_pred cCCchHHHHHHHHHhh
Q 004425 680 QGMLDEAAKVRTTMND 695 (754)
Q Consensus 680 ~g~~~~a~~~~~~m~~ 695 (754)
.|++++|...++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8999988888887655
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=7.8e-05 Score=67.77 Aligned_cols=183 Identities=14% Similarity=0.105 Sum_probs=139.9
Q ss_pred cCCHHHHHHHHhccCC--------CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCH
Q 004425 512 CGSIDGAFQIFKGISD--------RDI-VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGV-LQACIYSGLS 581 (754)
Q Consensus 512 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~ 581 (754)
..+.++..+++.++.. ++. ..|..++-+....|+.+-|..+++++.+.- |.+.-...+ ..-+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 4578889998887742 333 245566677788899999999999998753 655432222 2345678999
Q ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 004425 582 EGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS--PFSESPLLWRTLVSVSKLMANSKFSILASKRL 659 (754)
Q Consensus 582 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 659 (754)
++|+++++.+.++ -+-|..++--=+-++-..|+.-+|++-+.+. .+..|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999874 3445566776677777788888888776654 35579999999999999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhcCC---chHHHHHHHHHhhCCC
Q 004425 660 LDLEPKDAGSFILVSNMYAGQGM---LDEAAKVRTTMNDLRL 698 (754)
Q Consensus 660 ~~~~p~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~ 698 (754)
+=+.|-++..+..+++++...|- .+-|.+.+.+..+...
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99999999999999999887774 5556666666554433
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.18 E-value=4.6e-05 Score=66.15 Aligned_cols=114 Identities=7% Similarity=0.055 Sum_probs=88.2
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 004425 552 LFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PF 629 (754)
Q Consensus 552 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 629 (754)
+|++.+. ..|+. .....+...+...|++++|...|+.+... .+.+...+..+..++.+.|++++|.+.++.. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556665 55654 34566677788888999999998888662 2345677888888888999999999888765 33
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcch
Q 004425 630 SE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGS 669 (754)
Q Consensus 630 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 669 (754)
.| ++..|..+...+...|+.++|...++++++++|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 34 67888888889999999999999999999999987653
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=3.8e-06 Score=52.76 Aligned_cols=35 Identities=31% Similarity=0.402 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCc
Q 004425 226 RCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPND 260 (754)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 260 (754)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998874
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0012 Score=60.90 Aligned_cols=145 Identities=14% Similarity=0.132 Sum_probs=81.7
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004425 506 ITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGI 585 (754)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 585 (754)
...|...|++++|++.......-+....+. ..+.+..+.+-|.+.+++|.+ +. +..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~-------- 181 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVK-------- 181 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHH--------
Confidence 345666677777777666633333333332 223444556666666666665 22 33455544444432
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Q 004425 586 CLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSP--FSESPLLWRTLVSVSKLMANSKFSILASKRLLDLE 663 (754)
Q Consensus 586 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 663 (754)
...-.+.+.+|.-+|+++. ..|++.+.+....+|...||+++|+.+++.++..+
T Consensus 182 ------------------------la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 182 ------------------------LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred ------------------------HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 1111223444444444442 34566666666666667777777777777777777
Q ss_pred CCCcchHHHHHHHHHhcCCchHHH
Q 004425 664 PKDAGSFILVSNMYAGQGMLDEAA 687 (754)
Q Consensus 664 p~~~~~~~~l~~~~~~~g~~~~a~ 687 (754)
++++.+..+++-+-...|+-.++.
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHH
Confidence 777777777766666666665544
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.13 E-value=0.00049 Score=76.47 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH
Q 004425 633 PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYA 678 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 678 (754)
..+|--+-..|....+++++..+++.+++.+|.|.-+..-++..|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3344455577788889999999999999999999888888888876
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=4.1e-06 Score=52.58 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=31.3
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCh
Q 004425 125 ITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNE 159 (754)
Q Consensus 125 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 159 (754)
.+||++|++|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999998873
No 139
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.09 E-value=2.2e-05 Score=73.38 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=60.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 004425 572 LQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMAN 648 (754)
Q Consensus 572 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~ 648 (754)
..-..+.+++++|+..|..+++ +.|+ ...|..-..+|.+.|.++.|++=.+.. .+.|. ...|..|..++...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 4445566677777777777644 4443 344455666677777777776665543 44442 5566666667777777
Q ss_pred hHHHHHHHHHhhccCCCCcchHHHH
Q 004425 649 SKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 649 ~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
+++|++.|+++++++|++......|
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHH
Confidence 7777777777777777765433333
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.02 E-value=0.00015 Score=63.54 Aligned_cols=85 Identities=18% Similarity=0.159 Sum_probs=43.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcC
Q 004425 607 MVDLLGRAGRLSEAMNLINSSP-FSES----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQG 681 (754)
Q Consensus 607 l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 681 (754)
+...+...|++++|.+.|+.+. ..|| ...+..|...+...|++++|...++.. .-.+-.+..+..+|++|.+.|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCC
Confidence 3444444555555555544431 1122 123333445555555555555555442 222223456666777777777
Q ss_pred CchHHHHHHHH
Q 004425 682 MLDEAAKVRTT 692 (754)
Q Consensus 682 ~~~~a~~~~~~ 692 (754)
++++|...|++
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 77777776654
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.02 E-value=9.1e-06 Score=50.53 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHhHHCCCCC
Q 004425 226 RCVNFMILEYNKAGESEMAFHVFVHLLSSDFEP 258 (754)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 258 (754)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=8.3e-06 Score=50.71 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=27.3
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCC
Q 004425 125 ITWTSLIKGYLDDGDYESVLGIACDMYRSEEKF 157 (754)
Q Consensus 125 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 157 (754)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.00 E-value=6.7e-06 Score=64.19 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHH
Q 004425 614 AGRLSEAMNLINSS----PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKV 689 (754)
Q Consensus 614 ~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 689 (754)
.|++++|+.+++++ +..++...|..+..++...|++++|..++++ .+.+|.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666554 2112455666778888888888888888888 777777777777889999999999999998
Q ss_pred HHH
Q 004425 690 RTT 692 (754)
Q Consensus 690 ~~~ 692 (754)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.98 E-value=0.00022 Score=72.26 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC
Q 004425 501 VGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSG 579 (754)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 579 (754)
...+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.++. .| |...+..-...|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34456667777889999999999998777666677888888888999999999998863 44 4455666666788999
Q ss_pred CHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 004425 580 LSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSSPFSE 631 (754)
Q Consensus 580 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 631 (754)
+++.|..+.+++.+ ..|+ ..+|..|+.+|...|++++|+..++.+|..+
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999999976 3454 5689999999999999999999999886543
No 145
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.97 E-value=1.8e-05 Score=59.05 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcC-CchHHHHHHHHHhh
Q 004425 632 SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQG-MLDEAAKVRTTMND 695 (754)
Q Consensus 632 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 695 (754)
++..|..+...+...|++++|+..++++++++|+++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999999987654
No 146
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.0027 Score=58.56 Aligned_cols=137 Identities=12% Similarity=0.081 Sum_probs=92.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-
Q 004425 450 VLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR- 528 (754)
Q Consensus 450 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 528 (754)
++.+.+.......+......-...|...+++++|.+...... +......=+..+.|..+++-|.+.++.|.+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344445444444443333444456788888888887766521 2333333355677788888888888888774
Q ss_pred ChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 529 DIVSWNAMLSAYAL----HGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 529 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
+-.+.+.|..++.+ .+...+|.-+|++|-++ ..|+..+.+....+|...|++++|..+++....
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34566666666543 34578888888888763 567888888888888888888888888888766
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.96 E-value=7.3e-05 Score=60.02 Aligned_cols=92 Identities=14% Similarity=0.222 Sum_probs=75.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcC
Q 004425 604 FACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQG 681 (754)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 681 (754)
+..++..+...|++++|.+.++++ ...| +...|..+...+...|+.++|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677777888888888888765 3333 45677788888888899999999999999999998889999999999999
Q ss_pred CchHHHHHHHHHhh
Q 004425 682 MLDEAAKVRTTMND 695 (754)
Q Consensus 682 ~~~~a~~~~~~m~~ 695 (754)
++++|...++....
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999999887644
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.96 E-value=0.00044 Score=60.59 Aligned_cols=124 Identities=16% Similarity=0.134 Sum_probs=87.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc--cHHHH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAPDD----ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL--EHFAC 606 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~ 606 (754)
|..++..+ ..++...+...++++.+.. |+. .....+...+...|++++|...|+.+... .-.|.. .....
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 44445555 4788888888888888743 333 23344556777888999999999888773 322322 23446
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004425 607 MVDLLGRAGRLSEAMNLINSSPFSE-SPLLWRTLVSVSKLMANSKFSILASKRLL 660 (754)
Q Consensus 607 l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 660 (754)
+..++...|++++|+..++..+..+ .+..+...+..+...|+.++|...|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7888888999999999998764333 56677788888899999999999988764
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.96 E-value=0.00011 Score=74.92 Aligned_cols=85 Identities=9% Similarity=0.097 Sum_probs=47.4
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 004425 611 LGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAK 688 (754)
Q Consensus 611 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 688 (754)
+...|++++|++.++++ ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|..
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 33445555555555433 2223 355555555555566666666666666666666666666666666666666666666
Q ss_pred HHHHHhh
Q 004425 689 VRTTMND 695 (754)
Q Consensus 689 ~~~~m~~ 695 (754)
.+++...
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 6655433
No 150
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.95 E-value=0.023 Score=55.49 Aligned_cols=271 Identities=15% Similarity=0.146 Sum_probs=178.6
Q ss_pred CCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcccchHHH
Q 004425 409 GGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP--VTFSRLLSLSASQACLVRG 483 (754)
Q Consensus 409 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a 483 (754)
.|+-..|++.-.+.. ..|....-.++.+-.....|+++.|.+-|+.|... |.. .-...|.-...+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 455555555544322 33444444555544444478899999999888752 433 2334444455678888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-----CCChh--HHHHHHHHHH---HcCChHHHHHHH
Q 004425 484 RSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGIS-----DRDIV--SWNAMLSAYA---LHGLGKGALLLF 553 (754)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~ 553 (754)
.++-+...+.- +--.-...+.+...+..|+++.|+++.+.-. ++|+. .--.|+.+-+ -.-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88877776543 2234556788899999999999999998654 34443 1222332211 123456666666
Q ss_pred HHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC----C
Q 004425 554 EEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS----P 628 (754)
Q Consensus 554 ~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 628 (754)
.+..+ +.||-+ .-.....++.+.|++.++-.+++.+.+ ..|.......++ +.|.|+. +.+-+++. .
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHh
Confidence 66555 788876 444556789999999999999999965 456555443332 3455543 33222221 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc-CCchHHHHHHHHH
Q 004425 629 FSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ-GMLDEAAKVRTTM 693 (754)
Q Consensus 629 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m 693 (754)
.+| +.....++..+-...|++..|....+.+...+|. ...|.+|+++-... |+-.++..+..+.
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 345 5666777788888899999999999999999999 67899999997655 9988888777643
No 151
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.94 E-value=0.0072 Score=67.51 Aligned_cols=170 Identities=10% Similarity=0.082 Sum_probs=105.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
..++.-...+...|... .-+...+..+..+|.+.|+.+++..+++++++.. +-|+.+.|.+...|... ++++|.++
T Consensus 96 ~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 96 NLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred ccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 34443333344444442 2333467778888889999999999999999887 66788889999999988 99999998
Q ss_pred HhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC
Q 004425 522 FKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISI-LGVLQACIYSGLSEGGICLFNEIEQIYGLRPI 600 (754)
Q Consensus 522 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 600 (754)
+.+. +..|...+++.++.++|.++.. ..|+.+.+ ..+++ .+....|..--
T Consensus 172 ~~KA-----------V~~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~----------------ki~~~~~~~~~ 222 (906)
T PRK14720 172 LKKA-----------IYRFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIER----------------KVLGHREFTRL 222 (906)
T ss_pred HHHH-----------HHHHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHH----------------HHHhhhccchh
Confidence 8764 3447777788888999988888 55654432 22222 22221222222
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSK 644 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 644 (754)
+.++-.+...|...++++++..+++.+ ...| |.....-++..|+
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 334444555555566666666666654 2222 3333444444443
No 152
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00077 Score=65.85 Aligned_cols=152 Identities=11% Similarity=0.045 Sum_probs=109.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHhCCCCCcc-------------
Q 004425 538 SAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQ--ACIYSGLSEGGICLFNEIEQIYGLRPILE------------- 602 (754)
Q Consensus 538 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~------------- 602 (754)
.++...|++++|...--..++ +.++.. +..+++ ++-..++.+.|...|++.. .+.|+-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilk--ld~~n~-~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILK--LDATNA-EALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHh--cccchh-HHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 456667888888777666665 333222 222222 3445667778888877763 3444421
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHH
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS-PFSE-----SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNM 676 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 676 (754)
.+.-=..-..+.|++.+|.+.+.+. .+.| +...|.....+..+.|+.++|+.-.+.+++++|....+|...+++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 1222344566889999999999754 4444 566677777777889999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHhh
Q 004425 677 YAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 677 ~~~~g~~~~a~~~~~~m~~ 695 (754)
+...++|++|++-+++.-+
T Consensus 331 ~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988755
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.88 E-value=3.2e-05 Score=56.83 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=49.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 639 LVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 639 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+...+...|++++|+..++++++.+|+++..+..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566778899999999999999999999999999999999999999999999887653
No 154
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.0014 Score=59.85 Aligned_cols=176 Identities=16% Similarity=0.134 Sum_probs=133.7
Q ss_pred CCCch-hHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHH---HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004425 495 YAADV-IVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAM---LSAYALHGLGKGALLLFEEMKREGFAPDDISILG 570 (754)
Q Consensus 495 ~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 570 (754)
..++. .+|..++-+...+|+.+.|...++.+...-+.++... ..-+-..|++++|+++|+..++.+ +-|.+++-.
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KR 125 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKR 125 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHH
Confidence 34554 3455566677788999999999998764222222221 122445799999999999999865 335678877
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMA- 647 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g- 647 (754)
=+...-..|+--+|++-+....+ .+..|.+.|.-+.+.|...|++++|.=.++++ -..| ++..+..+...+...|
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 77777788888899998888887 57888999999999999999999999999987 4455 6777777877766554
Q ss_pred --ChHHHHHHHHHhhccCCCCcchHHHH
Q 004425 648 --NSKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 648 --~~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
|.+.|...|.++++++|.+...+.-+
T Consensus 204 ~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 204 AENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 88899999999999999765554433
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.87 E-value=0.00016 Score=61.02 Aligned_cols=93 Identities=12% Similarity=0.018 Sum_probs=51.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC---cchHHHHHH
Q 004425 604 FACMVDLLGRAGRLSEAMNLINSS-PFSES----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD---AGSFILVSN 675 (754)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 675 (754)
+...+..+.+.|++++|.+.++.+ ...|+ ...+..+..++...|+++.|...+++++...|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344444555555555555555443 11121 2344455566666666666666666666666553 345666666
Q ss_pred HHHhcCCchHHHHHHHHHhhC
Q 004425 676 MYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 676 ~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+|...|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666665443
No 156
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.86 E-value=0.069 Score=58.10 Aligned_cols=180 Identities=12% Similarity=0.027 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHcCChH---HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHH
Q 004425 532 SWNAMLSAYALHGLGK---GALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACM 607 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 607 (754)
+-+.|++.+.+.++.. +|+-+++.-.. ..| |..+-..+|..|+-.|-...|.+.|+.+.-+ .|.-|...|- +
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~ 513 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-I 513 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-H
Confidence 4567888888888755 45556666555 334 4456677888999999999999999998664 6666543332 2
Q ss_pred HHHHhhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC----CcchHHHHHHHHH
Q 004425 608 VDLLGRAGRLSEAMNLINSS-----PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK----DAGSFILVSNMYA 678 (754)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~ 678 (754)
...+...|++..+...++.. ....+..- ++..-.++|.+..-.+...---.+.-. -..+-.......+
T Consensus 514 ~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e---yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~ 590 (932)
T KOG2053|consen 514 FRRAETSGRSSFASNTFNEHLKFYDSSLKETPE---YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLC 590 (932)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHH---HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777776666543 00111111 222223556666554442211111111 1223345556678
Q ss_pred hcCCchHHHHHHHHHhhCCCccCCceeEEEECC--EEEEEecCC
Q 004425 679 GQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDS--KLHHFVASG 720 (754)
Q Consensus 679 ~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~--~~~~~~~~~ 720 (754)
..++.++-.+.++.|+-.......+ |.++.. +.-.|...|
T Consensus 591 ~~~~~~q~~~~~~~~~l~~~e~~I~--w~~L~DNRDl~~~~~w~ 632 (932)
T KOG2053|consen 591 NADRGTQLLKLLESMKLPPSEDRIQ--WVSLSDNRDLNAIPYWD 632 (932)
T ss_pred hCCcHHHHHHHHhccccCcchhhcc--cccccccccccccccCC
Confidence 8899999999998887443333333 665543 444454444
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.00016 Score=67.87 Aligned_cols=106 Identities=10% Similarity=0.043 Sum_probs=83.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhc
Q 004425 537 LSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRA 614 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 614 (754)
..-+.+.+++++|+..|.+.++ +.| |.+-|..-..+|++.|.++.|++-.+..+. +.|. ...|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHcc
Confidence 3457788999999999999999 777 456788888999999999999998888754 5565 56899999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcC
Q 004425 615 GRLSEAMNLINSS-PFSESPLLW-RTLVSVSKLMA 647 (754)
Q Consensus 615 g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~g 647 (754)
|++++|++.|++. .+.|+..+| ..|-.+-...+
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 9999999999865 778865554 34433333333
No 158
>PRK15331 chaperone protein SicA; Provisional
Probab=97.80 E-value=0.0012 Score=56.75 Aligned_cols=90 Identities=14% Similarity=-0.006 Sum_probs=78.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCc
Q 004425 606 CMVDLLGRAGRLSEAMNLINSS--PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGML 683 (754)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 683 (754)
....-+...|++++|..+|.-+ -..-++..|..|..+|...++++.|+..|..+..++++|+.++...+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 4455566789999999999855 22237888999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhh
Q 004425 684 DEAAKVRTTMND 695 (754)
Q Consensus 684 ~~a~~~~~~m~~ 695 (754)
++|...|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999987655
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.00045 Score=58.23 Aligned_cols=103 Identities=9% Similarity=0.044 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHH
Q 004425 569 LGVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE----SPLLWRTLVSV 642 (754)
Q Consensus 569 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~ 642 (754)
..+...+...|++++|.+.|+.+.....-.+ ....+..++.++.+.|++++|.+.++.+ ...| .+.++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444455555555555555544211101 1223444555556666666666655543 1122 24566777777
Q ss_pred HHhcCChHHHHHHHHHhhccCCCCcchHH
Q 004425 643 SKLMANSKFSILASKRLLDLEPKDAGSFI 671 (754)
Q Consensus 643 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 671 (754)
+...|+.+.|...++++++..|+++....
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 77888888888888888888888765443
No 160
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.73 E-value=8.1e-05 Score=55.29 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=44.3
Q ss_pred HhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 644 KLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 644 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
...|++++|+..++++++.+|++...+..++.+|.+.|++++|..+++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999986544
No 161
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00043 Score=65.54 Aligned_cols=107 Identities=17% Similarity=0.121 Sum_probs=88.9
Q ss_pred CCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHhhccCCCCcchHH
Q 004425 597 LRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLM---ANSKFSILASKRLLDLEPKDAGSFI 671 (754)
Q Consensus 597 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 671 (754)
-+-|.+.|..|...|.+.|+...|..-|.+. ...| ++..+..+..++... ....++..++++++.++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3456788999999999999999999888765 3334 688888888777655 3677899999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhCCCccCCc
Q 004425 672 LVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAG 703 (754)
Q Consensus 672 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 703 (754)
.|+..+...|++.+|...|+.|.+.....+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999998866554443
No 162
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.72 E-value=4.2e-05 Score=46.25 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHhHHCCC
Q 004425 226 RCVNFMILEYNKAGESEMAFHVFVHLLSSDF 256 (754)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 256 (754)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777663
No 163
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.71 E-value=2.1e-05 Score=48.28 Aligned_cols=32 Identities=31% Similarity=0.589 Sum_probs=30.7
Q ss_pred HHHhhccCCCCcchHHHHHHHHHhcCCchHHH
Q 004425 656 SKRLLDLEPKDAGSFILVSNMYAGQGMLDEAA 687 (754)
Q Consensus 656 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 687 (754)
++++++++|+|+.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4.1e-05 Score=46.30 Aligned_cols=31 Identities=32% Similarity=0.539 Sum_probs=25.2
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhCCC
Q 004425 125 ITWTSLIKGYLDDGDYESVLGIACDMYRSEE 155 (754)
Q Consensus 125 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 155 (754)
++||.||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.70 E-value=0.00094 Score=57.74 Aligned_cols=153 Identities=14% Similarity=-0.011 Sum_probs=99.1
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHH
Q 004425 539 AYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLS 618 (754)
Q Consensus 539 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 618 (754)
+..+.=+.+....-..+-.+ +.|....-..|..+....|++.+|...|++... --+.-|....-.+..+....++..
T Consensus 65 a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 65 ALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHH
Confidence 33444455555444443333 556666666777778888888888888877766 223444556667777777778888
Q ss_pred HHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 619 EAMNLINSSP-FSE---SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 619 ~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
+|...++++. ..| .+..-..+.+.+...|+...|+..++.++..-|+ +..-...+..+.++|+.++|..-+....
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 8877777651 111 2233345667777778888888888888887777 5566666777778887777776655544
Q ss_pred h
Q 004425 695 D 695 (754)
Q Consensus 695 ~ 695 (754)
+
T Consensus 221 d 221 (251)
T COG4700 221 D 221 (251)
T ss_pred H
Confidence 3
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.67 E-value=0.0018 Score=69.06 Aligned_cols=139 Identities=19% Similarity=0.171 Sum_probs=82.0
Q ss_pred CChhHHHHHHHHHHH--c---CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc
Q 004425 528 RDIVSWNAMLSAYAL--H---GLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL 601 (754)
Q Consensus 528 ~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 601 (754)
.|..+|...+.+... . +....|..+|++.++ ..|+.. .+..+..++... ++..|..
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~~~ 396 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQPLD 396 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCCcc
Confidence 455666666665433 2 236788999999998 678764 343333322211 1111110
Q ss_pred cHHHHHHHHHhhcCCHHHHHHHHHh---CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 602 EHFACMVDLLGRAGRLSEAMNLINS---SP-FSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~---~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
.++++.+.+..++ ++ ...++..+..+.-.....|++++|...++++++++|+ ...|..+|.+|
T Consensus 397 ------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~ 463 (517)
T PRK10153 397 ------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVY 463 (517)
T ss_pred ------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 0112222222222 11 2234566666666666678888888888888888884 67788888888
Q ss_pred HhcCCchHHHHHHHHHhhCC
Q 004425 678 AGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 678 ~~~g~~~~a~~~~~~m~~~~ 697 (754)
...|+.++|...+++.....
T Consensus 464 ~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 464 ELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 88888888888887665433
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.67 E-value=0.00067 Score=69.27 Aligned_cols=104 Identities=12% Similarity=-0.000 Sum_probs=65.8
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 004425 575 CIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFS 652 (754)
Q Consensus 575 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 652 (754)
+...|++++|+..|+++.+ --+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3444555555555555543 11122344555555555566666666655544 2334 566777788888888888888
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHhc
Q 004425 653 ILASKRLLDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 653 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 680 (754)
+..++++++++|+++.....+..+..+.
T Consensus 90 ~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 90 KAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888888888888888777776664444
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.65 E-value=0.0013 Score=59.59 Aligned_cols=129 Identities=14% Similarity=0.111 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHHH
Q 004425 530 IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD--DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFAC 606 (754)
Q Consensus 530 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 606 (754)
...+..+...+...|++++|+..|++..+....+. ...+..+...+.+.|++++|..++++... +.| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHH
Confidence 34566677777788888888888888876443332 24677777788888888888888888765 233 3445666
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCC
Q 004425 607 MVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGM 682 (754)
Q Consensus 607 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 682 (754)
++.+|...|+...+..-++.. ...+++|...++++++.+|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 677777777766554333221 123677889999999999986 5555555555554
No 169
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.63 E-value=0.04 Score=53.88 Aligned_cols=251 Identities=17% Similarity=0.135 Sum_probs=167.9
Q ss_pred hHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh--cccchHHHHHHHHHHHHhCCCCchhH--HHH
Q 004425 429 EFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSA--SQACLVRGRSLHAYSIKTGYAADVIV--GNA 504 (754)
Q Consensus 429 ~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ 504 (754)
-|.+|-.++...+.|+-..|.+.-.+-.+. +..|..-...++.+-. -.|+.+.|++-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 355666666665688888888776655432 3556666666666543 469999999999999762 22211 223
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHH--HHHHHHHHHHh-
Q 004425 505 LITMYAKCGSIDGAFQIFKGISD--RD-IVSWNAMLSAYALHGLGKGALLLFEEMKRE-GFAPDDI--SILGVLQACIY- 577 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~- 577 (754)
|.-.--+.|..+.|...-+.... |. .-.|.+.+...+..|+++.|+++++.-.+. -+.+|.. .-..|+.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33334567888888888877654 32 347888999999999999999999987753 3455553 23334433221
Q ss_pred --cCCHHHHHHHHHHHHHHhCCCCCccHH-HHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHH-
Q 004425 578 --SGLSEGGICLFNEIEQIYGLRPILEHF-ACMVDLLGRAGRLSEAMNLINSS-PFSESPLLWRTLVSVSKLMANSKFS- 652 (754)
Q Consensus 578 --~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a- 652 (754)
..+...|...-.+. ..+.|+..-- ..-..+|.+.|++.++-.+++.+ ...|.+.+|..+..+ +.|+....
T Consensus 240 ~ldadp~~Ar~~A~~a---~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~a--r~gdta~dR 314 (531)
T COG3898 240 LLDADPASARDDALEA---NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRA--RSGDTALDR 314 (531)
T ss_pred HhcCChHHHHHHHHHH---hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHh--cCCCcHHHH
Confidence 12344444443333 4677775433 34567889999999999999987 667888887665543 55654333
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 004425 653 ILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAK 688 (754)
Q Consensus 653 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 688 (754)
.+-.+++.++.|+|.+....++..-...|++..|..
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 233566778999999999999888888888766654
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.63 E-value=0.00046 Score=62.56 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS-PF---SES-PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
.+..++..+...|++++|...+++. .. .++ ...|..+...+...|++++|...++++++..|++...+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445555555556666666655543 11 111 457778888888899999999999999999999998999999999
Q ss_pred HhcCC
Q 004425 678 AGQGM 682 (754)
Q Consensus 678 ~~~g~ 682 (754)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 88877
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.62 E-value=0.00014 Score=53.37 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=51.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 607 MVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 607 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
++..+.+.|++++|++.|+++ ...| ++..|..+..++...|++++|...++++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 466788899999999999876 4445 688999999999999999999999999999999974
No 172
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.61 E-value=0.0046 Score=53.66 Aligned_cols=98 Identities=15% Similarity=0.236 Sum_probs=47.9
Q ss_pred CCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC--CcchH
Q 004425 596 GLRPILEHFACMVDLLGRAGRLSEAMNLINSS---PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK--DAGSF 670 (754)
Q Consensus 596 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~ 670 (754)
.+.|++.+-..|...+.+.|+..||...|++. .+..|+.....+.++....++...|...++++.+.+|. .+...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 34444444445555555555555555555433 22334444455555555555555555555555554443 34444
Q ss_pred HHHHHHHHhcCCchHHHHHHHHH
Q 004425 671 ILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 671 ~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
..++.+|...|++++|+..|+..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a 186 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVA 186 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHH
Confidence 44555555555555555444443
No 173
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.60 E-value=0.012 Score=60.92 Aligned_cols=160 Identities=15% Similarity=0.164 Sum_probs=81.9
Q ss_pred HHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHH
Q 004425 405 IYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGR 484 (754)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 484 (754)
.++-.|++.+|.++|.+ +|....|+++|..|.-- -..+-+...|..++-+
T Consensus 641 ~~Ay~gKF~EAAklFk~--------------------~G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKK 690 (1081)
T KOG1538|consen 641 VFAYQGKFHEAAKLFKR--------------------SGHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKK 690 (1081)
T ss_pred HHHhhhhHHHHHHHHHH--------------------cCchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHH
Confidence 34446677777777765 67777777777766531 1122233344444433
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 004425 485 SLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD 564 (754)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 564 (754)
.+..+-.+ +.-++.--.+-..++...|+.++|..+.- .+|-.+-++++-+++-. .+
T Consensus 691 mL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~~------------------d~gW~d~lidI~rkld~----~e 746 (1081)
T KOG1538|consen 691 MLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEICG------------------DHGWVDMLIDIARKLDK----AE 746 (1081)
T ss_pred HHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhhh------------------cccHHHHHHHHHhhcch----hh
Confidence 33332211 11111111223445556666666655432 23333333333333221 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 004425 565 DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSP 628 (754)
Q Consensus 565 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 628 (754)
..+...+..-+.+...+.-|.++|.+|-. ..+++++....+++++|..+.++.|
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCc
Confidence 23444444444455566667777777743 3456777778888888888877764
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.59 E-value=0.0033 Score=56.79 Aligned_cols=122 Identities=14% Similarity=0.048 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHH
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD--DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACM 607 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 607 (754)
..|..+...+...|++++|+..|++.+.....|. ..++..+...+.+.|++++|...+++... +.|+ ...+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHH
Confidence 4566677777778888888888888876432222 23677777788888888888888877765 2232 3445555
Q ss_pred HHHHh-------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc
Q 004425 608 VDLLG-------RAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 608 ~~~~~-------~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 680 (754)
..++. +.|++++|.. ..++|...+++++..+|++. ......+...
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~~ 164 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGNY---IEAQNWLKIT 164 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCcccH---HHHHHHHHHh
Confidence 55555 3333333322 23456777888888888732 3333334444
Q ss_pred CCc
Q 004425 681 GML 683 (754)
Q Consensus 681 g~~ 683 (754)
|++
T Consensus 165 ~~~ 167 (168)
T CHL00033 165 GRF 167 (168)
T ss_pred cCC
Confidence 443
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.58 E-value=0.00046 Score=62.36 Aligned_cols=92 Identities=9% Similarity=-0.044 Sum_probs=69.6
Q ss_pred cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHH
Q 004425 602 EHFACMVDLLGRAGRLSEAMNLINSS-PFSE----SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNM 676 (754)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 676 (754)
..|..++..+...|++++|+..+++. ...| .+.+|..+...+...|+.++|+..++++++++|.+...+..++.+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 34555666666677777777776654 1222 245788888999999999999999999999999999989999988
Q ss_pred HH-------hcCCchHHHHHHHHH
Q 004425 677 YA-------GQGMLDEAAKVRTTM 693 (754)
Q Consensus 677 ~~-------~~g~~~~a~~~~~~m 693 (754)
|. ..|++++|...+++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHH
Confidence 88 888888666666543
No 176
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.53 E-value=0.001 Score=53.17 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
|..+...+...|++++|+..+++..+ ..|+. ..+..+...+...|++++|.++++....
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455556666666666666666665 23332 3444455555555555566555555543
No 177
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.51 E-value=0.13 Score=51.61 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=56.5
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 621 MNLINSSPFSE----SPLLWRTLVSV--SKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 621 ~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
+.++++.+++| +...-|.|..| +..+|++.++.-...=+.++.| ++.+|..+|-++....+++||...+..+.
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 34455555554 34455555544 4678999999888888889999 59999999999999999999999998653
No 178
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.51 E-value=0.00029 Score=53.21 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=50.5
Q ss_pred HHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 640 VSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 640 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
...+...+++++|..+++++++++|+++..+..++.+|...|++++|.+.++...+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567788999999999999999999999999999999999999999999998876543
No 179
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.51 E-value=0.0025 Score=62.73 Aligned_cols=134 Identities=10% Similarity=0.112 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQA-CIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
.+|-.++....+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|.++|+...+. +..+...+...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888999999999988532 2233344433333 33456777799999999884 5556778889999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 610 LLGRAGRLSEAMNLINSS-PFSES----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
.+.+.|+.+.|..+|++. ..-|. ..+|..++..-...|+.+....+.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999865 22333 35999999999999999999999999999988844
No 180
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.49 E-value=0.018 Score=57.68 Aligned_cols=161 Identities=16% Similarity=0.093 Sum_probs=104.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC---Ch----hHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004425 504 ALITMYAKCGSIDGAFQIFKGISDR---DI----VSWNAMLSAYAL---HGLGKGALLLFEEMKREGFAPDDISILGVLQ 573 (754)
Q Consensus 504 ~li~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 573 (754)
.++-.|-...+++...++.+.+... ++ ..-....-++.+ .|+.++|+.++..++...-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577777788888888777653 11 111123345555 7888888888888776666677777777766
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHH----HHHH---H-----hCCCCC-
Q 004425 574 ACIY---------SGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEA----MNLI---N-----SSPFSE- 631 (754)
Q Consensus 574 a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A----~~~~---~-----~~~~~p- 631 (754)
.|-. ....++|+..|.+. +.+.|+..+--.++.++...|...+. .++. . +-...+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5432 23467888888877 56667665544555566666643222 2222 1 112223
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 632 -SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 632 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
|--.+.+++.++...||.++|.+++++++.+.|..-
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 444457899999999999999999999999988743
No 181
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.46 E-value=0.0011 Score=52.49 Aligned_cols=81 Identities=10% Similarity=0.021 Sum_probs=68.7
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHhccCC--------ChHHHHHHHHHHHHHCCCCcHHH
Q 004425 126 TWTSLIKGYLDDGDYESVLGIACDMYRSEE-KFNEHTCSVILEACSLLE--------DRIFGEQIHAFAIKSGFENNVFV 196 (754)
Q Consensus 126 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~m~~~g~~~~~~~ 196 (754)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|++.++.. .+-....+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334566677777999999999999999999 899999999999987553 34467888999999999999999
Q ss_pred HHHHHHHhHh
Q 004425 197 GTSLISMYFH 206 (754)
Q Consensus 197 ~~~li~~~~~ 206 (754)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 182
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.43 E-value=0.16 Score=50.67 Aligned_cols=121 Identities=16% Similarity=0.079 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004425 501 VGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGL 580 (754)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 580 (754)
+.+..+.-+...|+...|.++-.+..-||-.-|-..+.+|+..++|++-..+-.. +-..+.|...+.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444566677788999999998888889999999999999999999877665332 2234778888999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004425 581 SEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVS 641 (754)
Q Consensus 581 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 641 (754)
..+|..+..++ .+..-+..|.++|++.+|.+..-+. .|...+..+..
T Consensus 253 ~~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~ 299 (319)
T PF04840_consen 253 KKEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILK 299 (319)
T ss_pred HHHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHH
Confidence 99998888663 1255678888999999988776553 24444444433
No 183
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.38 E-value=0.00047 Score=53.68 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=38.8
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHH
Q 004425 543 HGLGKGALLLFEEMKREGFA-PDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEA 620 (754)
Q Consensus 543 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 620 (754)
.|++++|+.+++++.+.... |+...+..+..++.+.|++++|..+++.. ...|. ......++.+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666666653221 12333444555666666666666666551 11121 22233445555566666666
Q ss_pred HHHHH
Q 004425 621 MNLIN 625 (754)
Q Consensus 621 ~~~~~ 625 (754)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 184
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.37 E-value=0.0015 Score=51.78 Aligned_cols=79 Identities=8% Similarity=-0.073 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHHCCC-CCCcchHHHHHHHHhccCC--------chHHHHHHHHHHHhcCCCChhHHH
Q 004425 229 NFMILEYNKAGESEMAFHVFVHLLSSDF-EPNDYTFTNVISVCYENLG--------VEEGKQLHGLAVKFGVVREISVGN 299 (754)
Q Consensus 229 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~~ 299 (754)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++.- +-+...+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 8999999999999887542 345667889999999999999999
Q ss_pred HHHHHHHh
Q 004425 300 AIVTMYGK 307 (754)
Q Consensus 300 ~li~~~~~ 307 (754)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887754
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.37 E-value=0.00027 Score=52.43 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=38.7
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHH
Q 004425 613 RAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSN 675 (754)
Q Consensus 613 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 675 (754)
..|++++|+++++++ ...| +..++..+..++...|++++|...++++...+|+++..+..++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456666666666554 2223 56666667777777777777777777777777776555555543
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.35 E-value=0.0069 Score=64.75 Aligned_cols=50 Identities=14% Similarity=0.038 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhhcc--CCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 649 SKFSILASKRLLDL--EPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 649 ~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
...+.+..+++.++ +|.++..|..++-.+...|++++|...+++..+...
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p 451 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM 451 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 44566666676664 777788899999999999999999999999877653
No 187
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.28 E-value=0.0004 Score=45.92 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHH
Q 004425 634 LLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSN 675 (754)
Q Consensus 634 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 675 (754)
.+|..+..++...|+.++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999999988875
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.26 E-value=0.0029 Score=64.59 Aligned_cols=118 Identities=8% Similarity=0.025 Sum_probs=87.3
Q ss_pred CCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCC------CcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHH
Q 004425 191 ENNVFVGTSLISMYFHSGCFREAENVFRGLAYK------DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFT 264 (754)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 264 (754)
..+......+++......+++.+..++-+.... -..+..++|+.|.+.|..+.++++++.=...|+-||.+||+
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344455555566666666666666666544421 12245688888888888899999988888899999999999
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 004425 265 NVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKH 308 (754)
Q Consensus 265 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 308 (754)
.||+.+.+.|++..|.++..+|...+...+..++..-+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999998888877777777766666665554
No 189
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.26 E-value=0.0011 Score=66.84 Aligned_cols=65 Identities=14% Similarity=-0.081 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcch---HHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 632 SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGS---FILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 632 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
++..|+.+..++...|++++|+..++++++++|++..+ |++++.+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 68899999999999999999999999999999998854 999999999999999999999988764
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.25 E-value=0.0043 Score=51.35 Aligned_cols=86 Identities=16% Similarity=0.088 Sum_probs=57.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC---CcchHHHHHHHHH
Q 004425 607 MVDLLGRAGRLSEAMNLINSS---PFSE--SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK---DAGSFILVSNMYA 678 (754)
Q Consensus 607 l~~~~~~~g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 678 (754)
+..++-..|+.++|+.++++. +..+ -...+-.+...++..|+.++|+.++++.++..|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344555566666666666543 1111 1335556777777778888888888888877777 6666777777888
Q ss_pred hcCCchHHHHHHHH
Q 004425 679 GQGMLDEAAKVRTT 692 (754)
Q Consensus 679 ~~g~~~~a~~~~~~ 692 (754)
..|+++||.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88888888877643
No 191
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0025 Score=62.75 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=92.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSK 650 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 650 (754)
-...+.+.|++..|..-|+++..-.... +.-+.++..... . .-..++..|..++.+.+++.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~--------------~~~~~ee~~~~~-~----~k~~~~lNlA~c~lKl~~~~ 274 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYR--------------RSFDEEEQKKAE-A----LKLACHLNLAACYLKLKEYK 274 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhcc--------------ccCCHHHHHHHH-H----HHHHHhhHHHHHHHhhhhHH
Confidence 4557778888888888888776532211 111112222111 1 12335667888888899999
Q ss_pred HHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHH
Q 004425 651 FSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIY 730 (754)
Q Consensus 651 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (754)
.|+....++++++|+|.-+.+..+.+|...|+++.|+..|+++.+. .|..++|.
T Consensus 275 ~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------------------------~P~Nka~~ 328 (397)
T KOG0543|consen 275 EAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------------------------EPSNKAAR 328 (397)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------------------------CCCcHHHH
Confidence 9999999999999999999999999999999999999999988662 45667888
Q ss_pred HHHHHHHHHHHH
Q 004425 731 SKLDLLNDEMKL 742 (754)
Q Consensus 731 ~~l~~l~~~~~~ 742 (754)
++|..+.+++++
T Consensus 329 ~el~~l~~k~~~ 340 (397)
T KOG0543|consen 329 AELIKLKQKIRE 340 (397)
T ss_pred HHHHHHHHHHHH
Confidence 888888777765
No 192
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.19 E-value=0.0099 Score=51.11 Aligned_cols=89 Identities=9% Similarity=-0.021 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLL 611 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 611 (754)
.-.+..-+...|++++|..+|+-+.. +.|... -|..|..+|-..|++++|+..|..... .. +-+...+-.+..++
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-IK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC-CCCchHHHHHHHHH
Confidence 33444445556666666666666655 445443 444455555555666666666665543 11 12234444455555
Q ss_pred hhcCCHHHHHHHHH
Q 004425 612 GRAGRLSEAMNLIN 625 (754)
Q Consensus 612 ~~~g~~~~A~~~~~ 625 (754)
...|+.+.|++-|+
T Consensus 114 L~lG~~~~A~~aF~ 127 (157)
T PRK15363 114 LACDNVCYAIKALK 127 (157)
T ss_pred HHcCCHHHHHHHHH
Confidence 55555555555544
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.17 E-value=0.039 Score=52.83 Aligned_cols=171 Identities=11% Similarity=0.013 Sum_probs=107.4
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC--CChh----HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHH
Q 004425 505 LITMYAKCGSIDGAFQIFKGISD--RDIV----SWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD--ISILGVLQACI 576 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 576 (754)
....+.+.|++++|.+.|+.+.. |+.. ..-.++.+|.+.+++++|+..+++.++ ..|+. ..+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHHh
Confidence 34445667888888888888754 3321 123466778888999999999999888 44443 34444444433
Q ss_pred h--cC---------------C---HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 004425 577 Y--SG---------------L---SEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLW 636 (754)
Q Consensus 577 ~--~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 636 (754)
. .+ + ..+|...|+.+++. |=...-..+|...+..+...- ..--
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~l-a~~e 178 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRL-AKYE 178 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHH-HHHH
Confidence 2 11 1 12344445555442 222233444544433321000 0011
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhccCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 637 RTLVSVSKLMANSKFSILASKRLLDLEPKD---AGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 637 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
......|.+.|++.-|..-++.+++.-|+. ..+...++.+|...|..++|..+.+.+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 145566888899999999999999988874 4577888899999999999999887653
No 194
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.17 E-value=0.0097 Score=60.89 Aligned_cols=119 Identities=14% Similarity=0.059 Sum_probs=72.3
Q ss_pred CCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----CChhHH
Q 004425 460 MEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKT--GYAADVIVGNALITMYAKCGSIDGAFQIFKGISD----RDIVSW 533 (754)
Q Consensus 460 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 533 (754)
...+...+..++..+.+..+++.+..++.+.... ....-..+..++|..|.+.|..+.+..+++.=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445556666666666666666666666666543 2222233444666666666666666666655433 666667
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004425 534 NAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYS 578 (754)
Q Consensus 534 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 578 (754)
|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777776666666655555556655555555543
No 195
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.15 Score=50.60 Aligned_cols=162 Identities=13% Similarity=0.036 Sum_probs=97.1
Q ss_pred HHhCCCHHHHHHHHhcCCCCChh-hHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHH
Q 004425 406 YAKGGDLKSARMLLDGFSCKYTA-EFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGR 484 (754)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 484 (754)
+.-.|+.++|...--.+..-|.. .+-..+.+.+-...++.+.|...|++-+.. .|+...-..+- ...
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~----------~~~ 246 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSAS----------MMP 246 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHh----------hhH
Confidence 44456666665554444433332 222333333332266777777777776644 45543221111 111
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-------CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004425 485 SLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD-------RDIVSWNAMLSAYALHGLGKGALLLFEEMK 557 (754)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 557 (754)
..+......| +...+.|.+..|.+.|.+... ++...|.....+..+.|+.++|+.-.++..
T Consensus 247 k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 247 KKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 1222222222 446778889999998887753 344567777777888899999999888887
Q ss_pred HcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 558 REGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 558 ~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
. +.|... .|..-..++...+.|++|.+.|+...+
T Consensus 315 ~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 315 K--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred h--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7 555443 455555567778889999999988865
No 196
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.14 E-value=0.016 Score=57.36 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 569 LGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 569 ~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
..+...+.+.|++++|.++|+++..
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.11 E-value=0.00086 Score=49.86 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=49.9
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHhhccCC
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMA-NSKFSILASKRLLDLEP 664 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 664 (754)
...|..++..+...|++++|+..|++. ...| ++.+|..+..++...| +.++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345666777777777777777777654 3344 5788888999999999 79999999999999988
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.10 E-value=0.0032 Score=60.64 Aligned_cols=62 Identities=13% Similarity=0.007 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 634 LLWRTLVSVSKLMANSKFSILASKRLLDLEPKD---AGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 634 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
..+..+..++...|++++|...|+++++..|++ +.++..++.+|...|++++|.++++++.+
T Consensus 181 ~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 181 NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455566666666666666666666665553 34555556666666677777666665544
No 199
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.10 E-value=0.36 Score=48.12 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=60.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc
Q 004425 400 TALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQAC 479 (754)
Q Consensus 400 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 479 (754)
+.-+.-+...|+...|.++..+..-++-..|-..+.+++. .+++++-..+... +-++..|..++.+|.+.|+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~--~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAE--NKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3334445556666677777666666666666666777776 6666655544321 1123556666666666666
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004425 480 LVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 480 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
..+|..+...+ .+..-+.+|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 66666555541 113445666666666666554
No 200
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.59 Score=50.20 Aligned_cols=110 Identities=21% Similarity=0.170 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004425 500 IVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSG 579 (754)
Q Consensus 500 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 579 (754)
.+.+--+.-+...|+-.+|.++-.+.+-||-..|---+.+++..+++++-+++-+.+. ...-|.-...+|.+.|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG 758 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence 3344455566777888899999888888888888888888888888887666555433 1345666788899999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHH
Q 004425 580 LSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLIN 625 (754)
Q Consensus 580 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 625 (754)
+.++|.+++-+.. |. .-.+.+|.+.|++.+|.++--
T Consensus 759 n~~EA~KYiprv~---~l-------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 759 NKDEAKKYIPRVG---GL-------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cHHHHhhhhhccC---Ch-------HHHHHHHHHhccHHHHHHHHH
Confidence 9999988886652 22 156788888888888877653
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.06 E-value=0.0022 Score=62.54 Aligned_cols=128 Identities=13% Similarity=0.033 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH---HHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-------CCC-CCHH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNE---IEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-------PFS-ESPL 634 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~-p~~~ 634 (754)
.|..|...|.-.|+++.|+...+. +.+++|-+.. ...+..+..++.-.|+++.|.+.++.. +.+ -...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455566666667889999877664 2233555443 356788899999999999999888743 211 1345
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhccC------CCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 635 LWRTLVSVSKLMANSKFSILASKRLLDLE------PKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 635 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
...+|.+.|....+++.|+....+=+.+. .....++..|+++|...|..++|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56678888888888899988876654432 2245688999999999999999998776553
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.04 E-value=0.0051 Score=55.41 Aligned_cols=72 Identities=8% Similarity=0.027 Sum_probs=46.1
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccC----------------CChHHHHHHHHHHHHHCCCCcHHHHHHHH
Q 004425 138 GDYESVLGIACDMYRSEEKFNEHTCSVILEACSLL----------------EDRIFGEQIHAFAIKSGFENNVFVGTSLI 201 (754)
Q Consensus 138 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------------~~~~~a~~~~~~m~~~g~~~~~~~~~~li 201 (754)
|..+=....+..|.+.|+.-|..+|+.||+.+=+. .+-+-|.+++++|...|+-||..++..|+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 33344444445555555555555555555444322 24456788888999999999999999988
Q ss_pred HHhHhcCC
Q 004425 202 SMYFHSGC 209 (754)
Q Consensus 202 ~~~~~~g~ 209 (754)
+.+++.+.
T Consensus 146 ~iFG~~s~ 153 (228)
T PF06239_consen 146 NIFGRKSH 153 (228)
T ss_pred HHhccccH
Confidence 88877654
No 203
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.02 E-value=0.006 Score=54.95 Aligned_cols=89 Identities=12% Similarity=0.214 Sum_probs=65.4
Q ss_pred CCCchhHHHHHHHHHh-----cCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccC----------------ChHHHH
Q 004425 323 ERNLISWTALISGYVR-----SGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCS----------------NLELGL 381 (754)
Q Consensus 323 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------------~~~~a~ 381 (754)
.+|-.+|..+|..|.+ .|+.+=....+..|.+-|+.-|..+|+.||..+=+.. +-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3455555555555543 3666666677777778888888888888887765422 356788
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHhCCC
Q 004425 382 QLHGFAIKHGYLSDVRLGTALVDIYAKGGD 411 (754)
Q Consensus 382 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 411 (754)
+++++|...|+.||..++..|++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 999999999999999999999999876544
No 204
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.00 E-value=0.0068 Score=59.64 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 004425 566 ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR-AGRLSEAMNLINSS--PFSESPLLWRTLVSV 642 (754)
Q Consensus 566 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 642 (754)
.+|..++..+.+.+..+.|..+|.++.+ .-..+...|...+.+-.+ .++.+.|.++|+.. .+..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4678888999999999999999999975 223345566666666455 45666699999866 344588999999999
Q ss_pred HHhcCChHHHHHHHHHhhccCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 643 SKLMANSKFSILASKRLLDLEPKDA---GSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 643 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+...|+.+.|..++++++..-|.+. ..|...++.=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999877644 57888888888999999999999988764
No 205
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.00 E-value=0.018 Score=47.70 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=66.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHh
Q 004425 536 MLSAYALHGLGKGALLLFEEMKREGFAPDD--ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFACMVDLLG 612 (754)
Q Consensus 536 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 612 (754)
+..++-..|+.++|+.+|++.+..|+.... ..+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 456677889999999999999998877653 3677788889999999999999998876421111 1222334556777
Q ss_pred hcCCHHHHHHHHHh
Q 004425 613 RAGRLSEAMNLINS 626 (754)
Q Consensus 613 ~~g~~~~A~~~~~~ 626 (754)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88888888877643
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.00 E-value=0.0021 Score=48.41 Aligned_cols=65 Identities=17% Similarity=0.283 Sum_probs=52.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHH
Q 004425 609 DLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
..|.+.+++++|.+.++.+ ...| ++..|......+...|++++|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4677888888888888766 3344 688888888999999999999999999999999877665444
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.95 E-value=0.11 Score=54.25 Aligned_cols=234 Identities=11% Similarity=0.100 Sum_probs=139.1
Q ss_pred hHHHHHHHHhccCCchHHHH--HHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhc
Q 004425 262 TFTNVISVCYENLGVEEGKQ--LHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRS 339 (754)
Q Consensus 262 t~~~ll~~~~~~~~~~~a~~--~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 339 (754)
.|++.=++|.+.++..--+- -++++.+.|-.|+... +...++-.|.+.+|-++|.+ +
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~ 658 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------S 658 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------c
Confidence 34444455555555433322 2456677777777654 33446667888888888764 4
Q ss_pred CChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHH
Q 004425 340 GHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLL 419 (754)
Q Consensus 340 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 419 (754)
|.-..|+++|.+|+-- -...-+...|.-++-..+.+.--+ +.-+..--.+-..++...|+.++|..+.
T Consensus 659 G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~ 726 (1081)
T KOG1538|consen 659 GHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEIC 726 (1081)
T ss_pred CchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhh
Confidence 6666777777666421 112334445555444444433222 1122222234455666778888776664
Q ss_pred hcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCch
Q 004425 420 DGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADV 499 (754)
Q Consensus 420 ~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 499 (754)
-. +|-.+-+.++-+++-.. +..+...+...+.+...+..|-++|..+-..
T Consensus 727 ~d--------------------~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ 776 (1081)
T KOG1538|consen 727 GD--------------------HGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGDL------ 776 (1081)
T ss_pred hc--------------------ccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhccH------
Confidence 32 55555566555554322 2334444444555666777788888777542
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC--CChh-----------HHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 004425 500 IVGNALITMYAKCGSIDGAFQIFKGISD--RDIV-----------SWNAMLSAYALHGLGKGALLLFEEMKREGF 561 (754)
Q Consensus 500 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 561 (754)
.+++++....++|.+|..+-+..++ +|+. -+..--.+|.+.|+-.+|..+++++....+
T Consensus 777 ---ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 777 ---KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred ---HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 3577888888999999999888875 4442 223344678888999999999998875443
No 208
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.95 E-value=0.0072 Score=49.02 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=75.2
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc----chHHHHHHHHHhcCC
Q 004425 609 DLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA----GSFILVSNMYAGQGM 682 (754)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 682 (754)
-++...|+++.|++.|.+. ..-| .+..||.-..+++.+|+.++|..-+++++++.-+-. .+|+..+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567888999999888654 3444 688999999999999999999999999999854422 368899999999999
Q ss_pred chHHHHHHHHHhhCCCc
Q 004425 683 LDEAAKVRTTMNDLRLS 699 (754)
Q Consensus 683 ~~~a~~~~~~m~~~~~~ 699 (754)
-+.|..-|+...+.|-+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 99999999988776654
No 209
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.92 E-value=0.5 Score=46.71 Aligned_cols=95 Identities=12% Similarity=0.086 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-----HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHH-hCCCCCc--cH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAPD-----DI-SILGVLQACIYSGLSEGGICLFNEIEQI-YGLRPIL--EH 603 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~--~~ 603 (754)
+..+...+.+.|++++|+++|++....-...+ .. .|...+-++...|++..|.+.+++.... .++..+. ..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 44566778888899999999888876433221 11 3344455667778888888888887432 1233332 34
Q ss_pred HHHHHHHHhh--cCCHHHHHHHHHhC
Q 004425 604 FACMVDLLGR--AGRLSEAMNLINSS 627 (754)
Q Consensus 604 ~~~l~~~~~~--~g~~~~A~~~~~~~ 627 (754)
...|++++-. ...+++|+.-|+.+
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 5566777643 44677777777776
No 210
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.86 E-value=0.63 Score=46.97 Aligned_cols=352 Identities=13% Similarity=0.067 Sum_probs=165.6
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcC
Q 004425 265 NVISVCYENLGVEEGKQLHGLAVKFGVV----REISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSG 340 (754)
Q Consensus 265 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 340 (754)
..+.++...|.+.+++.+++.+...-++ -+..+|+.++-++++.--++.- +.+...=..-|--||-.|.+.=
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~----e~~s~dl~pdyYemilfY~kki 208 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELK----ESMSSDLYPDYYEMILFYLKKI 208 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHH----HhcccccChHHHHHHHHHHHHH
Confidence 4556667788888888887777665443 6778888777666654222211 1111111122333444443221
Q ss_pred ChhHHHHHHHHhHhcCcccChhhHHHHHHHhccc--CChHHHHHHHHHHHHhCCCcchh-HHHHHHHHHHhCCCHHHHHH
Q 004425 341 HGGKAINGFLEFLDLGICCDSSCLATVIDGCSVC--SNLELGLQLHGFAIKHGYLSDVR-LGTALVDIYAKGGDLKSARM 417 (754)
Q Consensus 341 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~ 417 (754)
+ .++.-.-..+.|....+..++....-. ..+.--.++++.-...-+.|+-. +...|+..+.+ +.+++..
T Consensus 209 ~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~ 280 (549)
T PF07079_consen 209 H------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGH 280 (549)
T ss_pred H------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHH
Confidence 1 111100011234344444444332211 12222334444444444455433 23344444443 4444444
Q ss_pred HHhcCC--------CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHh-ccc---
Q 004425 418 LLDGFS--------CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTF-------SRLLSLSA-SQA--- 478 (754)
Q Consensus 418 ~~~~~~--------~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-------~~ll~~~~-~~~--- 478 (754)
+.+.+. +.=..++..++...++ .++..+|-+.+.-+.-- .|+...- ..+-+..+ ...
T Consensus 281 ~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk--~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~T 356 (549)
T PF07079_consen 281 FCEAIASSKIEKLKEELIDRFGNLLSFKVK--QVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYT 356 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHH
Confidence 443332 2233467777777777 78888887777666533 4443211 11112222 111
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHH---HHHHhcCC-HHHHHHHHhccCC---CChhHHHHHH----HHHHHc---C
Q 004425 479 CLVRGRSLHAYSIKTGYAADVIVGNALI---TMYAKCGS-IDGAFQIFKGISD---RDIVSWNAML----SAYALH---G 544 (754)
Q Consensus 479 ~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~~---g 544 (754)
++..-..+|..+....+..- .....|+ .-+-+.|. -++|.++++.+.+ -|..+-|.+. .+|.+. .
T Consensus 357 klr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~ 435 (549)
T PF07079_consen 357 KLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMH 435 (549)
T ss_pred HHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhh
Confidence 22223334444433332111 1111111 12223333 6677777766643 3443333221 122211 1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHH----HHHHHH--HHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHH
Q 004425 545 LGKGALLLFEEMKREGFAPDDIS----ILGVLQ--ACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLS 618 (754)
Q Consensus 545 ~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 618 (754)
...+-+.+-+-..+.|+.|-.+. -+.|.+ -+...|++.++.-+-..+ ..+.|++.+|..++-++....+++
T Consensus 436 ~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL---~~iaPS~~~~RLlGl~l~e~k~Y~ 512 (549)
T PF07079_consen 436 AIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL---TKIAPSPQAYRLLGLCLMENKRYQ 512 (549)
T ss_pred hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH---HHhCCcHHHHHHHHHHHHHHhhHH
Confidence 22333333334446677664432 222222 234567777776655555 247788888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHH
Q 004425 619 EAMNLINSSPFSESPLLWRT 638 (754)
Q Consensus 619 ~A~~~~~~~~~~p~~~~~~~ 638 (754)
||.+++.++| |+..+|++
T Consensus 513 eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 513 EAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHhCC--CchhhHHH
Confidence 8888888875 45444443
No 211
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.81 E-value=0.93 Score=48.20 Aligned_cols=126 Identities=16% Similarity=0.203 Sum_probs=70.3
Q ss_pred cCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC----cchHHHHHHHHhccCCchHHHHH
Q 004425 207 SGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPN----DYTFTNVISVCYENLGVEEGKQL 282 (754)
Q Consensus 207 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~ 282 (754)
.|++++|++++-++.++|.. |..+.+.|++-...++++. .|-..| ...|+.+-..++....+++|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888888877753 4555566666666555532 111111 23455566666666666666666
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHH
Q 004425 283 HGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFL 350 (754)
Q Consensus 283 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (754)
+..-... ...+.+|.+..++++-+.+-..+++ |....-.|...+.+.|.-++|.+.|-
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHH
Confidence 5442211 2344455555555555555555443 33344455666666676666666554
No 212
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.81 E-value=0.01 Score=58.08 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=29.0
Q ss_pred HHhcCChhHHHHHHHHhHhcCcc---cChhhHHHHHHHhcccCChHHHHHHHH
Q 004425 336 YVRSGHGGKAINGFLEFLDLGIC---CDSSCLATVIDGCSVCSNLELGLQLHG 385 (754)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~ 385 (754)
+|+.|+....+.+|+..++.|-. .=...|..+-.+|.-.+++++|.+++.
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 56666666666666666665521 112334455555666666777766654
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.11 Score=48.12 Aligned_cols=168 Identities=8% Similarity=-0.032 Sum_probs=110.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCC--Ch--------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004425 502 GNALITMYAKCGSIDGAFQIFKGISDR--DI--------VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGV 571 (754)
Q Consensus 502 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 571 (754)
+++|...+.-...+++-...++.-..| .+ ..-+.++..+.-+|.+.-.+.++++.++...+-+......|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 345555555544455555555443322 12 23345667777788888899999999986655566777888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhC----CCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHh
Q 004425 572 LQACIYSGLSEGGICLFNEIEQIYG----LRPILEHFACMVDLLGRAGRLSEAMNLINSSPFS-E-SPLLWRTLVSVSKL 645 (754)
Q Consensus 572 l~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~ 645 (754)
.+.-.+.|+.+.|..+|+...+..+ +.-..-+...+...|.-++++.+|...+.+.+.. | |+...|+-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888899999999999997765322 2222233334555666677888888888777432 2 45555554444455
Q ss_pred cCChHHHHHHHHHhhccCCCCcch
Q 004425 646 MANSKFSILASKRLLDLEPKDAGS 669 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~~p~~~~~ 669 (754)
.|+...|++..+.+.+..|.....
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchh
Confidence 688888888888888888874443
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.79 E-value=0.027 Score=54.38 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=41.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc
Q 004425 604 FACMVDLLGRAGRLSEAMNLINSS----PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG 668 (754)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 668 (754)
+.-++.+|...|++++|...|+++ |..| .+..|..++..+...|+.+.|...++++++..|++..
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 334555555555555555555443 2222 2445555666777888899999999999988888653
No 215
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.023 Score=56.26 Aligned_cols=138 Identities=12% Similarity=-0.048 Sum_probs=100.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcC
Q 004425 536 MLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAG 615 (754)
Q Consensus 536 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 615 (754)
-.+.|.+.|++..|...|++.+.. -.... .-+.++...... . -...+..+.-+|.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~~~~-----------~~~~ee~~~~~~-~--------k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LEYRR-----------SFDEEEQKKAEA-L--------KLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hhccc-----------cCCHHHHHHHHH-H--------HHHHhhHHHHHHHhhh
Confidence 357889999999999999987751 11111 111122221111 1 1224667888889999
Q ss_pred CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHH-HHHHHH
Q 004425 616 RLSEAMNLINSS-PF-SESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEA-AKVRTT 692 (754)
Q Consensus 616 ~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~ 692 (754)
++.+|++..++. .. ++|.-..---..+|...|+++.|+..|+++++++|+|..+-..|+.+-.+..+..+. .++|..
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988866 23 346777777788999999999999999999999999999999999888777766665 778888
Q ss_pred Hhh
Q 004425 693 MND 695 (754)
Q Consensus 693 m~~ 695 (754)
|-.
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 844
No 216
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.69 E-value=1.1 Score=47.27 Aligned_cols=181 Identities=14% Similarity=0.046 Sum_probs=123.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004425 498 DVIVGNALITMYAKCGSIDGAFQIFKGISDRDI---VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQA 574 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 574 (754)
+..+|...++.-.+.|+.+.+.-.|+...-|-. ..|--.+.-....|+.+-|-.++.+..+--.+-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 566777788888888999999998888765422 23444444444558888888777776654333333333223334
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHH----HH-HHH
Q 004425 575 CIYSGLSEGGICLFNEIEQIYGLRPIL-EHFACMVDLLGRAGRLSEAM---NLINSS-PFSESPLLWRTL----VS-VSK 644 (754)
Q Consensus 575 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l----~~-~~~ 644 (754)
+...|+.+.|..+++.+.++ . |+. +.-.--+....+.|..+.+. +++... +.+-+......+ .. -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 56788999999999999884 3 553 44445667778899998888 555543 222222222222 22 234
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcC
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQG 681 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 681 (754)
..++.+.|..++.++.+..|++...|..+.++....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 5689999999999999999999999999999877666
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.60 E-value=0.034 Score=48.74 Aligned_cols=107 Identities=20% Similarity=0.198 Sum_probs=71.2
Q ss_pred HHhcCCHHHHHHHHHHHHHHhC--CCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 004425 575 CIYSGLSEGGICLFNEIEQIYG--LRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFS 652 (754)
Q Consensus 575 ~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 652 (754)
....|+.+.+...++++..-+. +-|+... ..........+++. -......++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 3455677777777777655321 1111111 11222333333332 123456677888899999999
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 653 ILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 653 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
...+++++..+|-+...|..+..+|...|+..+|.++|++++.
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998853
No 218
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.54 E-value=0.56 Score=44.96 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=26.7
Q ss_pred HHhCCCHHHHHHHHhcCCCCCh---hhH---HHHHHHHhhhhcCCHHHHHHHHHHHHHc
Q 004425 406 YAKGGDLKSARMLLDGFSCKYT---AEF---NAILSGFMEKIADDEEDVMVLFSQQRLA 458 (754)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~---~~~---~~li~~~~~~~~~~~~~A~~~~~~m~~~ 458 (754)
+.+.|++++|.+.|+.+....+ ..- -.+..++.+ .+++++|...|++..+.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~--~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK--NADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHh
Confidence 3445666666666665542111 111 122334455 66777777777766654
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.46 E-value=0.0043 Score=47.40 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhcc----CCC---CcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 634 LLWRTLVSVSKLMANSKFSILASKRLLDL----EPK---DAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 634 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
.+++.+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666677777777777777777777653 122 24578899999999999999999988753
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.40 E-value=0.3 Score=45.49 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=85.8
Q ss_pred HHHHHhcCCHHHHHHHHhccCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHh
Q 004425 506 ITMYAKCGSIDGAFQIFKGISD--RD----IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD--ISILGVLQACIY 577 (754)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~ 577 (754)
...+...|++++|...|+.+.. |+ ..+.-.++.++.+.|++++|...+++.++. -|+. ..+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 3445566777777777776643 22 123445566666777777777777776663 2332 222222222221
Q ss_pred cCCH-------------HHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004425 578 SGLS-------------EGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSK 644 (754)
Q Consensus 578 ~g~~-------------~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 644 (754)
-... .+|...|+ .++.-|=......+|...+..+...- ..--..+...+.
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~----------------~li~~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~ 152 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFE----------------ELIKRYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYY 152 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHH----------------HHHHH-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHH----------------HHHHHCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 1111 12222222 23333333334444444333321000 001113456788
Q ss_pred hcCChHHHHHHHHHhhccCCCCc---chHHHHHHHHHhcCCchHHHH
Q 004425 645 LMANSKFSILASKRLLDLEPKDA---GSFILVSNMYAGQGMLDEAAK 688 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 688 (754)
+.|++..|..-++.+++.-|+.+ .+...++..|.+.|..+.|..
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 89999999999999999999854 467788888999999885543
No 221
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.19 Score=46.57 Aligned_cols=141 Identities=6% Similarity=-0.054 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHH-----
Q 004425 327 ISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTA----- 401 (754)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----- 401 (754)
...+.++..+.-.|.+.-.+.++.+.++.....++.....+.+...+.|+.+.|...|+...+..-..+....+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345667777778888888899999998877777888888888888899999999999998877433333333333
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCCC---ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004425 402 LVDIYAKGGDLKSARMLLDGFSCK---YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLL 471 (754)
Q Consensus 402 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 471 (754)
....|.-..++..|...|++++.. +.+..|.=.-.... .|+..+|++..+.|.+. .|...+-++++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 334455677888888888877744 33333332223333 67888899888888875 56555544443
No 222
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.37 E-value=0.062 Score=45.43 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=61.5
Q ss_pred HHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc---hHHHHHHHHHhc
Q 004425 609 DLLGRAGRLSEAMNLINSS----PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG---SFILVSNMYAGQ 680 (754)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~ 680 (754)
....+.|++++|.+.|+.+ |..| ...+-..|+.++...|++++|...+++.++++|.++. ++...|-++..+
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 3344677777777777765 3333 3556667888999999999999999999999998765 455666566665
Q ss_pred CC---------------chHHHHHHHHHhh
Q 004425 681 GM---------------LDEAAKVRTTMND 695 (754)
Q Consensus 681 g~---------------~~~a~~~~~~m~~ 695 (754)
.. ..+|...|+.+..
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 54 5566666666544
No 223
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=2 Score=46.35 Aligned_cols=136 Identities=7% Similarity=-0.148 Sum_probs=68.7
Q ss_pred hCCCCCChhhHHH-----HHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCC---HhHHHHHhccCCC-
Q 004425 152 RSEEKFNEHTCSV-----ILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGC---FREAENVFRGLAY- 222 (754)
Q Consensus 152 ~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~- 222 (754)
.-|++.+..-|.. +++-+...+.+..|.++-..+-..-... ..+|.....-+.+..+ -+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4466655555544 3455555566666666655543221111 4555555555555422 2223333333333
Q ss_pred -CCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCC----CCCcchHHHHHHHHhccCCchHHHHHHHHHHH
Q 004425 223 -KDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDF----EPNDYTFTNVISVCYENLGVEEGKQLHGLAVK 288 (754)
Q Consensus 223 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 288 (754)
.+-++|..+.+..-..|+++-|..+++.=...+- -.+..-+...+.-+...|+.+....++-++.+
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 3455666666666677777777766654222211 11223344555555566666655555554443
No 224
>PRK11906 transcriptional regulator; Provisional
Probab=96.29 E-value=0.057 Score=54.98 Aligned_cols=117 Identities=13% Similarity=0.109 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHH-HcCCCCCHH-HHHHHHHHHHhc---------CCHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHhh
Q 004425 546 GKGALLLFEEMK-REGFAPDDI-SILGVLQACIYS---------GLSEGGICLFNEIEQIYGLRP-ILEHFACMVDLLGR 613 (754)
Q Consensus 546 ~~~A~~~~~~m~-~~g~~p~~~-t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 613 (754)
.+.|+.+|.+.. ...+.|+.. .|..+..++... ....+|.+.-++..+ +.| |......+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 566777888877 222667654 444444433221 112233333333332 222 22333344444444
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 614 AGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 614 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
.|+++.|..+|++. ...|| ..+|......+...|+.++|.+.++++++++|.
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 44455555555443 23332 444444444444555555555555555555554
No 225
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=2.6 Score=46.26 Aligned_cols=118 Identities=12% Similarity=0.122 Sum_probs=70.5
Q ss_pred HHHHHHhHhcCCHhHHHHHhccCCCCCcch---HHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccC
Q 004425 198 TSLISMYFHSGCFREAENVFRGLAYKDVRC---VNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENL 274 (754)
Q Consensus 198 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 274 (754)
..-++.+++...++-|..+-+.-....... .-.-.+.+-+.|++++|..-|-+-... +.| ..+|.-+....
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 344566666666777776665433221111 111223455778888888877665432 222 23455555555
Q ss_pred CchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccC
Q 004425 275 GVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAIS 322 (754)
Q Consensus 275 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 322 (754)
.+.+-..+++.+.+.|+.. ...-..|+.+|.+.++.++-.++.+...
T Consensus 412 ~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 6666667777777777643 3344677888888888887777766654
No 226
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.21 E-value=1.2 Score=42.42 Aligned_cols=193 Identities=17% Similarity=0.154 Sum_probs=118.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004425 499 VIVGNALITMYAKCGSIDGAFQIFKGIS-----DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQ 573 (754)
Q Consensus 499 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 573 (754)
...+......+...+.+..+...+.... ......+......+...+++.++...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3445555666666677776666666543 22334555566666666777777777777766333321 11222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHHhCCCC----CccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHh
Q 004425 574 -ACIYSGLSEGGICLFNEIEQIYGLRP----ILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE--SPLLWRTLVSVSKL 645 (754)
Q Consensus 574 -a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~ 645 (754)
++...|++++|...+..... ..| ....+......+...++.++|...+.+. ...+ ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 66777777777777777633 222 2233334444456677777777777654 2222 25666777777777
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 646 MANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.++.+.|...+.+++...|.....+..++..+...|.++++...+++...
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77888888888888888777566666777776666777777777766544
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.12 E-value=0.0072 Score=46.15 Aligned_cols=30 Identities=10% Similarity=0.038 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Q 004425 633 PLLWRTLVSVSKLMANSKFSILASKRLLDL 662 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 662 (754)
..++..+...+...|+.++|+..+++++++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555666666666666666666666543
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.06 E-value=1.9 Score=43.53 Aligned_cols=133 Identities=13% Similarity=0.131 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHH-HHH
Q 004425 530 IVSWNAMLSAYALHGLGKGALLLFEEMKREG-FAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHF-ACM 607 (754)
Q Consensus 530 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 607 (754)
...|...+++-.+..-.+.|..+|-+..+.| +.++...+++++.-++. |+..-|-.+|+.-... + ||.-.| .-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f-~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--F-PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--C-CCchHHHHHH
Confidence 3567777777777777788888888888777 44566677777765554 6677777787765442 2 333333 356
Q ss_pred HHHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC
Q 004425 608 VDLLGRAGRLSEAMNLINSS--PFSES--PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD 666 (754)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 666 (754)
...+.+-++-+.|..+|++. .+..+ ..+|..++..-...|+...+..+-++..++-|+.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 66777788888888888743 11122 4567777777777788888888778888877774
No 229
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.04 E-value=0.71 Score=45.07 Aligned_cols=122 Identities=14% Similarity=0.058 Sum_probs=58.8
Q ss_pred HHHHHhcccchHHHHHHHHHHHHhCC-----CCchhHHHHHHHHHHhcCCHHHHHHHHhccC-------CCChh------
Q 004425 470 LLSLSASQACLVRGRSLHAYSIKTGY-----AADVIVGNALITMYAKCGSIDGAFQIFKGIS-------DRDIV------ 531 (754)
Q Consensus 470 ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~------ 531 (754)
+-.++...+.++.+.+.|+.+.+... -....++-.|...|.+..++++|.-+..+.. -.|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44555566667777777666654311 1234556666666666666666554433321 12221
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKR----EGFAPDD-ISILGVLQACIYSGLSEGGICLFNEI 591 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 591 (754)
+.-.|..++...|...+|.+..++..+ .|-+|-. .....+.+.|...|+.+.|..-|+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 112233445555555555555555432 2222211 12333444455555555555444443
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.97 E-value=0.072 Score=44.65 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH--------------HHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 004425 565 DISILGVLQACIYSGLSEGGICLFNEIE--------------QIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS--- 627 (754)
Q Consensus 565 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 627 (754)
..++..++.++++.|+++....+.+..- ......|+.....+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3445555555555555555555554431 01233455566666666666666666666666543
Q ss_pred -CCCCCHHHHHHHHHHHHh
Q 004425 628 -PFSESPLLWRTLVSVSKL 645 (754)
Q Consensus 628 -~~~p~~~~~~~l~~~~~~ 645 (754)
+++-+...|..|+.-+..
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 333346666666654443
No 231
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.96 E-value=4.2 Score=46.57 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=26.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSP 628 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 628 (754)
.+.+|...|+|++|..+..++.. +-.--..+-..|+.-+..+++.-||-++..+..
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 34455555555555555544422 111111222455555566666666665555543
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.92 E-value=0.049 Score=51.30 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 631 ESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK---DAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
|+...| |+.++...|++++|...|..+..-.|+ -++.+.-|+.+..+.|+.++|..+++++..+
T Consensus 178 ~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 178 PNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred chhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344444 666666777777777777777666555 3456777777777777777777777766554
No 233
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.87 E-value=0.78 Score=42.72 Aligned_cols=142 Identities=13% Similarity=0.085 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAPDD--ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILE-HFACMVD 609 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~ 609 (754)
+-.....+...|++.+|+..|+++...-..... .....+..++.+.|++++|...+++..+.+.-.|... .+-.++.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 334556677788899999999888875322211 2556677788888888888888888877554444321 1111111
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc-----------------hHHH
Q 004425 610 LLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG-----------------SFIL 672 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~~ 672 (754)
++... ... .+ ...+..+....|...++.+++..|++.- .-..
T Consensus 88 ~~~~~--~~~---~~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 88 SYYKQ--IPG---IL----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp HHHHH--HHH---HH-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--Ccc---ch----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 000 00 0011223345566666666666666432 2445
Q ss_pred HHHHHHhcCCchHHHHHHHHHhh
Q 004425 673 VSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 673 l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++..|.+.|.|..|..-++.+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH
Confidence 67889999999999999998765
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.27 Score=46.85 Aligned_cols=119 Identities=13% Similarity=0.062 Sum_probs=81.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCh
Q 004425 573 QACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRT---LVSVSKLMANS 649 (754)
Q Consensus 573 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~ 649 (754)
......|+..+|...|+..... .+-+.+.-..|+.+|...|+.++|..++..+|..-...-|.. -+....+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3455667888888888887662 233356666788888888888888888888866544444433 22333333333
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 650 KFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 650 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
.+.. .+++-+..+|+|...-..|+..|...|+.++|.+.+=.+.
T Consensus 220 ~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 220 PEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3332 3455667789999999999999999999999988765553
No 235
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.80 E-value=1.8 Score=41.12 Aligned_cols=217 Identities=13% Similarity=0.032 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcccchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 004425 445 EEDVMVLFSQQRLAGME-PDPVTFSRLLSLSASQACLVRGRSLHAYSIKT-GYAADVIVGNALITMYAKCGSIDGAFQIF 522 (754)
Q Consensus 445 ~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 522 (754)
...+...+......... .....+......+...+.+..+...+...... ........+..+...+...+.+..+...+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444444444433211 12355556666666777777776666666553 23445555666667777777788888888
Q ss_pred hccCC--CCh-hHHHHHHH-HHHHcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004425 523 KGISD--RDI-VSWNAMLS-AYALHGLGKGALLLFEEMKREGFAP----DDISILGVLQACIYSGLSEGGICLFNEIEQI 594 (754)
Q Consensus 523 ~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 594 (754)
..... ++. ..+..... .+...|++++|...+++... ..| ....+......+...++.+.+...+.....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~- 195 (291)
T COG0457 119 EKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK- 195 (291)
T ss_pred HHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh-
Confidence 77654 222 22333333 78889999999999999866 444 223444555557788899999999999876
Q ss_pred hCCCC-CccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 595 YGLRP-ILEHFACMVDLLGRAGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 595 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
.... ....+..+...+...+++++|...+... ...|+ ...+..+...+...++.+.+...+.+.++..|.
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 -LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred -hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2333 4677888889999999999999988765 33444 556666666666667899999999999999997
No 236
>PRK11906 transcriptional regulator; Provisional
Probab=95.76 E-value=0.43 Score=48.89 Aligned_cols=61 Identities=10% Similarity=-0.007 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 004425 632 SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 632 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
|+.....+..+....|+.+.|...++++..++|+.+.+|...+++..-.|+.++|.+..++
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555555555555555566666666666666666666666666666666666666655555
No 237
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.36 Score=46.29 Aligned_cols=103 Identities=15% Similarity=0.055 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCC-CHHHHHH
Q 004425 564 DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAG---RLSEAMNLINSS-PFSE-SPLLWRT 638 (754)
Q Consensus 564 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~~~ 638 (754)
|...|..|..+|...|+.+.|...|....+- ..++.+.+..+..++..+. ...++.++++++ ...| |.....-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4457878888888888888888888777552 2334555666666664432 356777788766 4445 5566666
Q ss_pred HHHHHHhcCChHHHHHHHHHhhccCCCCcc
Q 004425 639 LVSVSKLMANSKFSILASKRLLDLEPKDAG 668 (754)
Q Consensus 639 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 668 (754)
|...+...|++.+|...++.+++..|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 677788889999999999999998887543
No 238
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=95.69 E-value=0.011 Score=48.73 Aligned_cols=41 Identities=39% Similarity=0.671 Sum_probs=27.6
Q ss_pred ceeEEEECCEEEEEecCCCCCCChHHHHHHHHH-HHHHHHHcCCCC
Q 004425 703 GCSWIEIDSKLHHFVASGKDHPESEEIYSKLDL-LNDEMKLKVKDS 747 (754)
Q Consensus 703 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~ 747 (754)
|+||+++ |.|++||++||+...++..+.. ....++..||..
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~~~~~~~~~~~~~~~ 43 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMKEEGYVPDTKEVGHDV 43 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHHHcCCcchhhhhCCCc
Confidence 7899987 9999999999999555543332 233444445443
No 239
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.67 E-value=0.11 Score=45.52 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----HhCCCCCccHH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQ----IYGLRPILEHF 604 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 604 (754)
...++..+...|++++|+.+++++.. ..| |...+..++.++...|+..+|.+.|+.+.. ++|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44456667777888888888888877 445 455777888888888888888877776543 35777776543
No 240
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.58 E-value=1 Score=37.15 Aligned_cols=140 Identities=12% Similarity=0.044 Sum_probs=82.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHH
Q 004425 541 ALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEA 620 (754)
Q Consensus 541 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 620 (754)
.-.|..++..++..+..... +..-++-++--....-+-+-..+.++.+-+ --|. ..+|++...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk----iFDi----------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK----IFDI----------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG----GS-G----------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh----hcCc----------hhhcchHHH
Confidence 34577788888888877532 333445455444444444445555555532 2222 234444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004425 621 MNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLS 699 (754)
Q Consensus 621 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 699 (754)
...+-.++ -+......-+.+...+|+-+.-.+++..+.+-+..+|.....++++|.+.|...++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444432 233445556777888999999999999998755556889999999999999999999999999999886
No 241
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.57 E-value=0.073 Score=47.06 Aligned_cols=87 Identities=14% Similarity=0.168 Sum_probs=66.4
Q ss_pred HhhcCCHHHHHHHHHhC----CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCc
Q 004425 611 LGRAGRLSEAMNLINSS----PFSE---SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGML 683 (754)
Q Consensus 611 ~~~~g~~~~A~~~~~~~----~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 683 (754)
+.+.|++++|..-|... |..+ ..+.|..-..+..+.+.++.|+..+.++++++|.+..+....+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 34556666666555432 1111 2445555566777889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhCC
Q 004425 684 DEAAKVRTTMNDLR 697 (754)
Q Consensus 684 ~~a~~~~~~m~~~~ 697 (754)
++|+.-|+++.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987743
No 242
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.55 E-value=0.03 Score=34.27 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC
Q 004425 634 LLWRTLVSVSKLMANSKFSILASKRLLDLEPKD 666 (754)
Q Consensus 634 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 666 (754)
..|..+...+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 457777888888888888888888888888874
No 243
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.53 E-value=0.039 Score=46.22 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHh
Q 004425 560 GFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLG 612 (754)
Q Consensus 560 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 612 (754)
...|+..++.+++.+++..|++..|.++.+...+.|+++-+..+|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46688888888899998889999999999988888887777777777766443
No 244
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.50 E-value=0.17 Score=49.17 Aligned_cols=43 Identities=5% Similarity=-0.017 Sum_probs=21.7
Q ss_pred cCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcccchHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAG--MEPDPVTFSRLLSLSASQACLVRGR 484 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~ 484 (754)
..+.++|+..+.+-..+- ..---.+|..+..+.+..|.++++.
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 556667776666655431 0111134555555555555555443
No 245
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.39 E-value=0.027 Score=34.55 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 634 LLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 634 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
.+|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888886
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.32 E-value=2.4 Score=39.88 Aligned_cols=173 Identities=14% Similarity=0.075 Sum_probs=100.3
Q ss_pred HhcCCHHHHHHHHhccCCCCh------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----
Q 004425 510 AKCGSIDGAFQIFKGISDRDI------VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYS----- 578 (754)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----- 578 (754)
.+.|++++|.+.|+.+....+ .+--.++.++.+.+++++|+..+++.+..-..-....|..-|.+++.-
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 456788888888887764221 234456677788888899988888888733221223444444444321
Q ss_pred --CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004425 579 --GLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILAS 656 (754)
Q Consensus 579 --g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 656 (754)
.+...+.+.|..+.+-..-=|+. .-..+|...+..+... =..-=..+...|.++|.+.-|..-+
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS-------------~Ya~dA~~~i~~~~d~-LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNS-------------RYAPDAKARIVKLNDA-LAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCC-------------cchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhcChHHHHHHH
Confidence 22222333333332211111221 1112222222111000 0001124678889999999999999
Q ss_pred HHhhccCCCCcc---hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 657 KRLLDLEPKDAG---SFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 657 ~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+.+++--|+.+. ++..+.++|...|..++|.+..+-+...
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 999998777544 5667777899999999999998877653
No 247
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.29 E-value=0.66 Score=47.50 Aligned_cols=61 Identities=15% Similarity=0.055 Sum_probs=31.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004425 498 DVIVGNALITMYAKCGSIDGAFQIFKGISD--RDI----VSWNAMLSAYALHGLGKGALLLFEEMKR 558 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 558 (754)
+...++.+..+|.+.|++++|...|++..+ |+. .+|..+..+|...|+.++|++.+++.++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555555432 322 2355555555555555555555555554
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.25 E-value=0.24 Score=50.72 Aligned_cols=195 Identities=12% Similarity=0.058 Sum_probs=114.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHH
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSE 619 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 619 (754)
.-+..+.+.-+++-++.++ +.||..+-..++ +-.....+.++.++|++..+. |-. .+.. -......|.
T Consensus 178 AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE~----~lg~-s~~~~~~g~--- 245 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GEA----SLGK-SQFLQHHGH--- 245 (539)
T ss_pred HHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HHH----hhch-hhhhhcccc---
Confidence 3345667777777788777 778876533333 333455688999999888762 210 0000 000001111
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC--CcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 620 AMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK--DAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 620 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
..+.+.+-...+-..+-..|..++++.|+.++|++.++.+++..|. +-..+..|++.+...+++.|+..++.+-.+..
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 1111111122233445567888888999999999999999988776 45688899999999999999999999876544
Q ss_pred CccCCceeEEEECCEEEEEecCCCCCCCh-------HHHHHHHHHHHHHHHHcCCCCC
Q 004425 698 LSKEAGCSWIEIDSKLHHFVASGKDHPES-------EEIYSKLDLLNDEMKLKVKDSS 748 (754)
Q Consensus 698 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~ 748 (754)
..|....+|- ..-+..-..+|+..|+. ......++-+.+.++..-++|.
T Consensus 326 lpkSAti~YT--aALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 326 LPKSATICYT--AALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred CCchHHHHHH--HHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 4333221111 11111111344444432 2234456677777777666664
No 249
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.15 E-value=0.3 Score=51.19 Aligned_cols=133 Identities=13% Similarity=0.130 Sum_probs=78.0
Q ss_pred HHHHcCChHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCH
Q 004425 539 AYALHGLGKGALLLFEE-MKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRL 617 (754)
Q Consensus 539 ~~~~~g~~~~A~~~~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 617 (754)
...-.|+++++.++... -.-..++ ..-...++.-+.+.|..+.|+++.+.-..+ .++..++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCH
Confidence 33455777776665541 1111111 223556667777778888887775544332 3455678888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 618 SEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 618 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
+.|.++.++.. ++..|..|......+|+++.|+.+++++ .-+..|.-+|.-.|+.+.-.++-+....+|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88888777653 6778888888888888888888888773 346666677777777766666655554443
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.13 E-value=0.89 Score=39.32 Aligned_cols=67 Identities=19% Similarity=0.283 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004425 565 DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRA-GRLSEAMNLINSSPFSESPLLWRTLVSVS 643 (754)
Q Consensus 565 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 643 (754)
......++..|.+.+.++++.-++.++.. +...++.+... ++.+.|.+++.+- .++..|..++..+
T Consensus 69 ~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~ 135 (140)
T smart00299 69 HYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKAL 135 (140)
T ss_pred cCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 34444566777777777777777665522 22333444433 6777777777663 2566777776655
Q ss_pred H
Q 004425 644 K 644 (754)
Q Consensus 644 ~ 644 (754)
.
T Consensus 136 l 136 (140)
T smart00299 136 L 136 (140)
T ss_pred H
Confidence 4
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=0.65 Score=44.82 Aligned_cols=112 Identities=15% Similarity=0.106 Sum_probs=59.5
Q ss_pred cCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHH-HH-HHHHHhcCCHHHH
Q 004425 512 CGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI--SIL-GV-LQACIYSGLSEGG 584 (754)
Q Consensus 512 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~-~l-l~a~~~~g~~~~a 584 (754)
.|+..+|...++++.+ .|..+|+-.-.+|.-.|+...-...+++.... ..||.. +|. .+ .-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3555555555555543 35566666666666666666666666666542 234432 221 11 1233456666666
Q ss_pred HHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004425 585 ICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 585 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (754)
.+.-++..+ +.+. .-.-.+....+.-.|+..|+.+++.+-
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 666655533 3322 222335555666666666666666543
No 252
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.03 E-value=2.9 Score=47.74 Aligned_cols=166 Identities=15% Similarity=0.130 Sum_probs=96.3
Q ss_pred cCCHHHHHHHHHHHHHc-----CCCCCH--HHHHHHHHHHhccc--chHHHHHHHHHHHHhC--------CCCchhHHHH
Q 004425 442 ADDEEDVMVLFSQQRLA-----GMEPDP--VTFSRLLSLSASQA--CLVRGRSLHAYSIKTG--------YAADVIVGNA 504 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~-----g~~p~~--~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~--------~~~~~~~~~~ 504 (754)
+.++.+-+-+++++.+. .++.|. .-|...+..+...| -+++++.+. .++| ..|+...+..
T Consensus 864 qkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I---~kh~Ly~~aL~ly~~~~e~~k~ 940 (1265)
T KOG1920|consen 864 QKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYI---KKHGLYDEALALYKPDSEKQKV 940 (1265)
T ss_pred ccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHH---HhcccchhhhheeccCHHHHHH
Confidence 66777777777666532 122222 12334444444444 233333332 2222 2355544444
Q ss_pred ----HHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhc
Q 004425 505 ----LITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI--SILGVLQACIYS 578 (754)
Q Consensus 505 ----li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~ 578 (754)
..+.+...+.+++|.-.|+..-+ ..--+.+|...|+|.+|+.+-.+|.. .-|.. +-..|..-+..+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHc
Confidence 44444556777777777766532 22345677778888888887776643 12222 224567778888
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004425 579 GLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 579 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (754)
++.-+|-++......+ ..--+..|+++..+++|..+....
T Consensus 1013 ~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 8888888877766442 334567788888888888877654
No 253
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.69 E-value=0.26 Score=46.18 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=77.2
Q ss_pred HHHHHHccC--CCCchhHHHHHHHHHh-----cCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccC-----------
Q 004425 314 AERMFDAIS--ERNLISWTALISGYVR-----SGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCS----------- 375 (754)
Q Consensus 314 A~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------- 375 (754)
.++.|.... ++|-.+|-+++..+.. .++++-....++.|.+-|+.-|..+|+.||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355666665 5677778777776654 3667777788889999999999999999998876543
Q ss_pred -----ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCC
Q 004425 376 -----NLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGD 411 (754)
Q Consensus 376 -----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 411 (754)
.-+-+..++++|...|+.||-.+-..|++++++.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234578899999999999999999999999988654
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=2.6 Score=40.45 Aligned_cols=152 Identities=13% Similarity=0.095 Sum_probs=101.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcC
Q 004425 538 SAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAG 615 (754)
Q Consensus 538 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 615 (754)
......|++.+|..+|+...+. .|+ ...-..+..++...|+++.|..++..+-.+ ..-+ ......-+..+.+..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHh
Confidence 3456678888888888888873 343 345667778888889998888888776431 1111 111234456677777
Q ss_pred CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--CCcchHHHHHHHHHhcCCchHH-HHHHH
Q 004425 616 RLSEAMNLINSSPFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEP--KDAGSFILVSNMYAGQGMLDEA-AKVRT 691 (754)
Q Consensus 616 ~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~a-~~~~~ 691 (754)
...+..++-.+....| |...-..+...+...|+.+.|...+-.++..+- +|...-..|..++...|.-+.+ ...++
T Consensus 218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 6666666666665556 677777788888888999888888777776543 3667777888888777754443 34444
Q ss_pred HH
Q 004425 692 TM 693 (754)
Q Consensus 692 ~m 693 (754)
+|
T Consensus 298 kL 299 (304)
T COG3118 298 KL 299 (304)
T ss_pred HH
Confidence 44
No 255
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.49 E-value=0.31 Score=45.70 Aligned_cols=111 Identities=7% Similarity=0.018 Sum_probs=79.6
Q ss_pred HHHHHhccCC--CCChhhHHHHHHHHhcC-----CChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCC----------
Q 004425 111 VAQKLFDGML--VRSAITWTSLIKGYLDD-----GDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLE---------- 173 (754)
Q Consensus 111 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------- 173 (754)
...+.|...+ ++|-.+|-.++..+... +..+-....+..|.+.|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3445566665 56777777777766543 445556667788888898888889988887766543
Q ss_pred ------ChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCC-HhHHHHHhccCC
Q 004425 174 ------DRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGC-FREAENVFRGLA 221 (754)
Q Consensus 174 ------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~ 221 (754)
+-.-+.+++++|...|+.||..+-..|++++.+.+. ..+..++.-+|+
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 223467889999999999999999999999988875 344444444444
No 256
>PRK15331 chaperone protein SicA; Provisional
Probab=94.32 E-value=1.3 Score=38.54 Aligned_cols=84 Identities=8% Similarity=-0.043 Sum_probs=43.3
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHH
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLS 618 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 618 (754)
+...|++++|..+|+-+.- ..|... -+..|..+|-..+.+++|+..|..... .+ .-|...+-....+|...|+.+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCHH
Confidence 3455666666666666555 333222 334444444455666666666665543 12 122223334555566666666
Q ss_pred HHHHHHHhC
Q 004425 619 EAMNLINSS 627 (754)
Q Consensus 619 ~A~~~~~~~ 627 (754)
.|++.|+..
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 666665544
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.28 E-value=4.9 Score=41.66 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004425 534 NAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEI 591 (754)
Q Consensus 534 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 591 (754)
..+..+..+.|+.++|++.+++|.+....-|. .....|+.++...+.+.++..++.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34666666777777777777777753211122 25566777777777777777777665
No 258
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.17 E-value=7.8 Score=39.82 Aligned_cols=150 Identities=12% Similarity=-0.039 Sum_probs=81.9
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC--cc
Q 004425 528 RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP---DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI--LE 602 (754)
Q Consensus 528 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 602 (754)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+-++|...++..... .+... ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344577788888888888888888888877643222 2223333445556677788888887777661 11111 11
Q ss_pred HHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChHHHHHHHHHhhccCCCCcchHHHHHH
Q 004425 603 HFACMVDLLGRAGRLSEAMNL-INSSPFSESPLLWRTLVSVSKLM------ANSKFSILASKRLLDLEPKDAGSFILVSN 675 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 675 (754)
....+...+.. ..+..... ........-..++..+...+... ++.+.+...|+++.++.|+....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000122333334444444 78899999999999999998888888887
Q ss_pred HHHhc
Q 004425 676 MYAGQ 680 (754)
Q Consensus 676 ~~~~~ 680 (754)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 76554
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.10 E-value=6.5 Score=38.72 Aligned_cols=97 Identities=9% Similarity=-0.023 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcccchH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-C--ChhHHHHHHHH
Q 004425 466 TFSRLLSLSASQACLV---RGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD-R--DIVSWNAMLSA 539 (754)
Q Consensus 466 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~ 539 (754)
++..+..++...+..+ .|..+++.+... ++-.+.++-.-+..+.+.++.+++.+++.+|.. . ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4445555555555433 344444444322 122233333445555556666666666666643 1 12233333333
Q ss_pred H---HHcCChHHHHHHHHHHHHcCCCCC
Q 004425 540 Y---ALHGLGKGALLLFEEMKREGFAPD 564 (754)
Q Consensus 540 ~---~~~g~~~~A~~~~~~m~~~g~~p~ 564 (754)
+ .. .....|...+..++...+.|.
T Consensus 165 i~~l~~-~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 165 IKQLAE-KSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHh-hCcHHHHHHHHHHHHHHhCCC
Confidence 3 22 223455555555554444443
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.08 E-value=2.1 Score=45.75 Aligned_cols=116 Identities=17% Similarity=0.058 Sum_probs=76.6
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCccHH-HHHHHHHhhcCCHHHHHHHHHhCCC-CC-----CHHHHHHHHHHHHhcCChH
Q 004425 578 SGLSEGGICLFNEIEQIYGLRPILEHF-ACMVDLLGRAGRLSEAMNLINSSPF-SE-----SPLLWRTLVSVSKLMANSK 650 (754)
Q Consensus 578 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~-~p-----~~~~~~~l~~~~~~~g~~~ 650 (754)
....+.|.++++.+.+. + |+...| -.-...+...|++++|++.+++.-. .. ....+--++..+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~--y-P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--Y-PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh--C-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34567777777777653 2 444333 3455566677888888888875421 11 2334445566677788999
Q ss_pred HHHHHHHHhhccCCCCcchH-HHHHHHHHhcCCc-------hHHHHHHHHHhhC
Q 004425 651 FSILASKRLLDLEPKDAGSF-ILVSNMYAGQGML-------DEAAKVRTTMNDL 696 (754)
Q Consensus 651 ~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~-------~~a~~~~~~m~~~ 696 (754)
+|...+.++.+.+.-....| +..+-+|...|+. ++|.+++++....
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999999998776644444 4555567788888 8888888877653
No 261
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.00 E-value=11 Score=40.74 Aligned_cols=57 Identities=16% Similarity=0.066 Sum_probs=32.7
Q ss_pred CCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHH
Q 004425 392 YLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQ 455 (754)
Q Consensus 392 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m 455 (754)
++.+....-.+.+++.+.|.-++|.+.|-+-..+. +-+..|.. .+++.+|.++-+..
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~--LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVE--LNQWGEAVELAQRF 904 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHH--HHHHHHHHHHHHhc
Confidence 34455556666777777777777766655443321 22344555 66666666665544
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.95 E-value=0.44 Score=39.09 Aligned_cols=54 Identities=28% Similarity=0.174 Sum_probs=35.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 538 SAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 538 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
-+++..|+.+.|++.|.+.+. +-| +...|+.-..++.-+|+.++|+.-+++..+
T Consensus 51 valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 345666777777777777666 444 345677777777777777777776666655
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.92 E-value=1.8 Score=36.87 Aligned_cols=114 Identities=12% Similarity=0.055 Sum_probs=64.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhc
Q 004425 537 LSAYALHGLGKGALLLFEEMKREGFAP--DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRA 614 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 614 (754)
.....+.|++++|.+.|+.+...-... ....-..++.++.+.|++++|...+++.++-+--.|+ ..|.....+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 344456778888888888777642211 1235566777777888888888888777663222232 2344444444332
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 615 GRLSEAMNLINSS-PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 615 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
...+- .+..+ ..+-| .+....|...+++++..-|++.
T Consensus 96 ~~~~~---~~~~~~~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEG---SLQSFFRSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhh---HHhhhcccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 22221 11111 11111 1345678888999999999864
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.90 E-value=0.59 Score=45.12 Aligned_cols=159 Identities=12% Similarity=0.054 Sum_probs=118.8
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHH----HHHHHHHhhcCCH
Q 004425 542 LHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHF----ACMVDLLGRAGRL 617 (754)
Q Consensus 542 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g~~ 617 (754)
..|++.+|-..++++++. .+.|-..+.-.=.+|...|+.+.-...++++.. .-.|+...| ..+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 578999999999999974 455667888888899999999999999988865 235555433 3566677899999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC----CcchHHHHHHHHHhcCCchHHHHHHH
Q 004425 618 SEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK----DAGSFILVSNMYAGQGMLDEAAKVRT 691 (754)
Q Consensus 618 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 691 (754)
++|++.-++. .+.| |.-.-.++.......|+.+++.+..++--..--+ -...|-..+-.|.+.+.++.|+++|.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999876 3333 5656667778888899999999887765443222 12346667777889999999999998
Q ss_pred HHhhCCCccCCc
Q 004425 692 TMNDLRLSKEAG 703 (754)
Q Consensus 692 ~m~~~~~~~~~~ 703 (754)
.=.-..+.|+.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 654445555554
No 265
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.77 E-value=0.6 Score=44.22 Aligned_cols=91 Identities=20% Similarity=0.196 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc-cHHHHH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAPDD----ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL-EHFACM 607 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l 607 (754)
|+.-+.. .+.|++.+|...|...++.. |+. ..+.-|..++...|++++|..+|..+.++++-.|.. +.+--|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 5544443 34566777777777777643 332 244556677777777777777777776654444432 344444
Q ss_pred HHHHhhcCCHHHHHHHHHh
Q 004425 608 VDLLGRAGRLSEAMNLINS 626 (754)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~ 626 (754)
...+.+.|+.++|...+++
T Consensus 222 g~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQ 240 (262)
T ss_pred HHHHHHhcCHHHHHHHHHH
Confidence 4444444444444444433
No 266
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.65 E-value=13 Score=40.72 Aligned_cols=76 Identities=11% Similarity=0.037 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcc
Q 004425 295 ISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSV 373 (754)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 373 (754)
..+...+|+.+.-.|++++|-...-.|...+..-|.-.+..+...++......++ .....+.+...|..+|..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 3456677788888888888888888888888888877777777776655443322 111122455567777766655
No 267
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.64 E-value=2.1 Score=45.04 Aligned_cols=157 Identities=15% Similarity=0.041 Sum_probs=91.5
Q ss_pred HHHHHcCChhHHHHHHH--HhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 004425 233 LEYNKAGESEMAFHVFV--HLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGM 310 (754)
Q Consensus 233 ~~~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 310 (754)
+...-.|+++++.++.. ++.. .+ +..-...+++.+-+.|..+.|.++-.+- ..-.+...++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCC
Confidence 34456677777666654 1211 11 1334667777777778777777664332 123455678888
Q ss_pred hHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHh
Q 004425 311 SEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKH 390 (754)
Q Consensus 311 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 390 (754)
++.|.++.++.. +...|..|.....+.|+++-|.+.|.+..+ |..++--|...|+.+.-.++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 998888877664 566899999999999999999888887654 455666666777777777776666655
Q ss_pred CCCcchhHHHHHHHHHHhCCCHHHHHHHHhc
Q 004425 391 GYLSDVRLGTALVDIYAKGGDLKSARMLLDG 421 (754)
Q Consensus 391 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 421 (754)
|- ++....++.-.|+.++..+++.+
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 52 33333334444555555555443
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.52 E-value=0.11 Score=32.27 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 669 SFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 669 ~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
+|..|+++|.+.|+|++|++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4788999999999999999999984
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.49 E-value=6.9 Score=36.94 Aligned_cols=137 Identities=15% Similarity=0.153 Sum_probs=84.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh
Q 004425 536 MLSAYALHGLGKGALLLFEEMKREGFA-P-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR 613 (754)
Q Consensus 536 li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 613 (754)
-+..-.+.|++++|.+.|+.+.....- | ...+...++.++-+.+++++|+...++....++-.|++. |...+.++.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs- 117 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS- 117 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH-
Confidence 344455678999999999988864321 1 234667777788888899999988888877666666653 333344443
Q ss_pred cCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC-----------------cchHHHHHH
Q 004425 614 AGRLSEAMNLINSSPF-SESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD-----------------AGSFILVSN 675 (754)
Q Consensus 614 ~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------------~~~~~~l~~ 675 (754)
.+..++. ..|+. -...|...++++++.-|++ +..-...++
T Consensus 118 ---------~~~~i~~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iar 175 (254)
T COG4105 118 ---------YFFQIDDVTRDQS-------------AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIAR 175 (254)
T ss_pred ---------HhccCCccccCHH-------------HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 11211 1223334444444444442 233456778
Q ss_pred HHHhcCCchHHHHHHHHHhhC
Q 004425 676 MYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 676 ~~~~~g~~~~a~~~~~~m~~~ 696 (754)
.|.+.|.|..|..-++.|.+.
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhc
Confidence 899999999999999998774
No 270
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.45 E-value=7.5 Score=38.44 Aligned_cols=129 Identities=13% Similarity=0.148 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--c----CCHHHHHHHHhccCC-------CChhHHHHHHHHHHHcCC-
Q 004425 480 LVRGRSLHAYSIKTGYAADVIVGNALITMYAK--C----GSIDGAFQIFKGISD-------RDIVSWNAMLSAYALHGL- 545 (754)
Q Consensus 480 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~- 545 (754)
++....+++.+.+.|+.-+..+|-+..-.... . -....|..+|+.|++ ++-..+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455566666666666555544442222221 1 124566777777754 233445555443 2222
Q ss_pred ---hHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 004425 546 ---GKGALLLFEEMKREGFAPDDI--SILGVLQACIYSGL--SEGGICLFNEIEQIYGLRPILEHFACMVDLL 611 (754)
Q Consensus 546 ---~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 611 (754)
.+++..+|+.+.+.|+..+.. ....++..+..... +.++.++++.+.+ .|+++...+|..++-+-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHHH
Confidence 356677888888888877543 34444443332222 4578888888888 59998888877655444
No 271
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.41 E-value=4.7 Score=34.76 Aligned_cols=128 Identities=9% Similarity=0.018 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLL 611 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 611 (754)
....++..+...+.......+++.+...+. .+....+.++..|++.+ ..+...+++. .++.......+..+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHH
Confidence 345677777777888888888888887662 45567777888877653 3444455442 12233344577777
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 612 GRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLM-ANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 612 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
.+.+.++++.-++.+++. |...+..+..+ ++.+.|.+.+++ +.++..|..++..+..
T Consensus 80 ~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 778888888888887753 22222333333 788888887775 3356677777766553
No 272
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.37 E-value=3.6 Score=37.37 Aligned_cols=158 Identities=15% Similarity=0.030 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
..||-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++--.|+++-|.+-|...-+ -.|+...-...+-
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ---~D~~DPfR~LWLY 174 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ---DDPNDPFRSLWLY 174 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHh---cCCCChHHHHHHH
Confidence 3566666666677777777777777766 44432 2333333334455667666665555533 2333221111111
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC-------cchHHHHHHHHHhcCC
Q 004425 610 LLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD-------AGSFILVSNMYAGQGM 682 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~ 682 (754)
.-.+.-+..+|..-+.+-...-|..-|...+-.+.-. .+. .+.+++++.+-..++ .++|.-|+..|...|+
T Consensus 175 l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLg-kiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 175 LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLG-KIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHh-hcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 1223335556654432211223444555443332221 111 112233333322222 4579999999999999
Q ss_pred chHHHHHHHHHhh
Q 004425 683 LDEAAKVRTTMND 695 (754)
Q Consensus 683 ~~~a~~~~~~m~~ 695 (754)
.++|..+|+....
T Consensus 253 ~~~A~~LfKLaia 265 (297)
T COG4785 253 LDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987644
No 273
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.32 E-value=16 Score=40.71 Aligned_cols=55 Identities=7% Similarity=-0.092 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 004425 605 ACMVDLLGRAGRLSEAMNLINSSPFSE--SPLLWRTLVSVSKLMANSKFSILASKRL 659 (754)
Q Consensus 605 ~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 659 (754)
.--+..-.+.++++.+...+..|+..- ...-.--+..+....|+.++|...|+++
T Consensus 316 e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 316 ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333334345666666666665553211 1111122344444456666666666665
No 274
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.24 E-value=0.16 Score=48.84 Aligned_cols=113 Identities=12% Similarity=0.023 Sum_probs=80.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc
Q 004425 570 GVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFACMVDLLGRAGRLSEAMNLINSS-PFS-ESPLLWRTLVSVSKLM 646 (754)
Q Consensus 570 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~ 646 (754)
.-..-|.++|.+++|+.+|..... +.| +..++..-..+|.+..++..|+.=.+.. .+. .-...|.--+.+-...
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 346678999999999999998744 556 7888889999999999999887766543 211 1133444455555667
Q ss_pred CChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHH
Q 004425 647 ANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKV 689 (754)
Q Consensus 647 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 689 (754)
|+.++|..-++.+++++|++.+.- ..|++.....|+.-+
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELk----K~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELK----KSLARINSLRERKIA 217 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHH----HHHHHhcchHhhhHH
Confidence 899999999999999999965443 344444444444433
No 275
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.05 E-value=0.3 Score=47.12 Aligned_cols=87 Identities=10% Similarity=-0.020 Sum_probs=62.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcC
Q 004425 537 LSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAG 615 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 615 (754)
.+-|.++|.+++|+..|.+.+. +.| |.+++..-..+|.+...+..|..-......- -...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 4679999999999999999887 778 8899999999999999998887776666441 124566666655
Q ss_pred C-------HHHHHHHHHhC-CCCCCHH
Q 004425 616 R-------LSEAMNLINSS-PFSESPL 634 (754)
Q Consensus 616 ~-------~~~A~~~~~~~-~~~p~~~ 634 (754)
. ..||.+=++.. .++|+..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 4 44444444432 4566533
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.99 E-value=7.8 Score=36.10 Aligned_cols=205 Identities=13% Similarity=0.128 Sum_probs=106.8
Q ss_pred CCCCHH----HHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--hhHH
Q 004425 460 MEPDPV----TFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRD--IVSW 533 (754)
Q Consensus 460 ~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 533 (754)
+.||.. .|.-...+|....+++++..-+.++.+. .+.+...| -....++.|.-+.+++.+-+ +..|
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~klsEvvdl~ 94 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKLSEVVDLY 94 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456553 3444445666677777777766555531 11121111 11222334444444443311 1234
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC----CCCccHHHHH
Q 004425 534 NAMLSAYALHGLGKGALLLFEEMKR--EGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGL----RPILEHFACM 607 (754)
Q Consensus 534 ~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----~p~~~~~~~l 607 (754)
+--...|..+|..+.|-..+++.-+ .+++| ++|+++|++....... ..-.+.+...
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~lenv~P------------------d~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKALENVKP------------------DDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhcCCH------------------HHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 4456777777777777666665443 22444 4444444443321110 1112345555
Q ss_pred HHHHhhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHhhcc----CCCCcchHHHHHH
Q 004425 608 VDLLGRAGRLSEAMNLINSS-------PFSESP-LLWRTLVSVSKLMANSKFSILASKRLLDL----EPKDAGSFILVSN 675 (754)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~ 675 (754)
...|.+..+++||-..+.+- ..-|+. ..+-+.+-.+.-..++..|++.++.-.++ .|++..+...|..
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 66777888888877666543 111221 12333344444556888888888876553 4666667777765
Q ss_pred HHHhcCCchHHHHHHH
Q 004425 676 MYAGQGMLDEAAKVRT 691 (754)
Q Consensus 676 ~~~~~g~~~~a~~~~~ 691 (754)
.| ..|+.+++.++..
T Consensus 237 ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVLS 251 (308)
T ss_pred Hh-ccCCHHHHHHHHc
Confidence 55 4578888777654
No 277
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.89 E-value=3 Score=44.58 Aligned_cols=114 Identities=13% Similarity=0.061 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHhccCC--CChhHHHHH-HHHHHHcCChHHHHHHHHHHHHc--CCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 004425 512 CGSIDGAFQIFKGISD--RDIVSWNAM-LSAYALHGLGKGALLLFEEMKRE--GFA-PDDISILGVLQACIYSGLSEGGI 585 (754)
Q Consensus 512 ~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~--g~~-p~~~t~~~ll~a~~~~g~~~~a~ 585 (754)
....+.|.++++.+.+ |+...|... ...+...|+.++|++.|++.... ..+ .....+.-+...+.-..+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3456667777776655 665555433 23455667777777777765531 111 12234555556666677777777
Q ss_pred HHHHHHHHHhCCCCCccHHH-HHHHHHhhcCCH-------HHHHHHHHhC
Q 004425 586 CLFNEIEQIYGLRPILEHFA-CMVDLLGRAGRL-------SEAMNLINSS 627 (754)
Q Consensus 586 ~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~~ 627 (754)
..|..+.+...- +...|. ..+-++...|+. ++|.+++.++
T Consensus 326 ~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 326 EYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 777777653222 222222 223334455555 6666666655
No 278
>PRK10941 hypothetical protein; Provisional
Probab=92.84 E-value=0.68 Score=44.74 Aligned_cols=82 Identities=18% Similarity=0.159 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEE
Q 004425 636 WRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHH 715 (754)
Q Consensus 636 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~ 715 (754)
.+.|-.++.+.++++.|.++.+.++.+.|+++.-+.-.|-+|.+.|.+..|..-++...++..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P----------------- 246 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP----------------- 246 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC-----------------
Confidence 456777888999999999999999999999999999999999999999999999987766443
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHH
Q 004425 716 FVASGKDHPESEEIYSKLDLLNDEM 740 (754)
Q Consensus 716 ~~~~~~~~~~~~~~~~~l~~l~~~~ 740 (754)
..|.+..|...+..+.++.
T Consensus 247 ------~dp~a~~ik~ql~~l~~~~ 265 (269)
T PRK10941 247 ------EDPISEMIRAQIHSIEQKQ 265 (269)
T ss_pred ------CchhHHHHHHHHHHHhhcC
Confidence 2566677777777665443
No 279
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.57 E-value=5.5 Score=35.74 Aligned_cols=115 Identities=5% Similarity=-0.018 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHH-----HHHHHHHhhcCCHHHH
Q 004425 548 GALLLFEEMKREGFAPDDISILG--VLQACIYSGLSEGGICLFNEIEQIYGLRPILEHF-----ACMVDLLGRAGRLSEA 620 (754)
Q Consensus 548 ~A~~~~~~m~~~g~~p~~~t~~~--ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A 620 (754)
+.....+++....-+....++.. +...+...|++++|...++.... . |..+.+ -.|..++...|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~-t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---Q-TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---c-chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 55555566665322222222222 23356777888888888776643 1 222222 2566778889999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC
Q 004425 621 MNLINSSPFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD 666 (754)
Q Consensus 621 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 666 (754)
++.++....+. .+.....-...+...|+.++|...|+++++.++++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99998763221 22333444567788899999999999999887553
No 280
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.48 E-value=21 Score=39.78 Aligned_cols=81 Identities=15% Similarity=0.012 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHh---cCCHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTG-YAADVIVGNALITMYAK---CGSIDG 517 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~---~g~~~~ 517 (754)
.|++|.|++.+-. ..+...+.+.+...+.-+.-..-.+... ..+.... -.|...-+..||..|.+ ..+..+
T Consensus 271 tgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~~ 345 (613)
T PF04097_consen 271 TGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEITDPRE 345 (613)
T ss_dssp TT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT-HHH
T ss_pred HhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhccCHHH
Confidence 7888888888766 2234556666666655443332222211 2222111 01112446677777776 457888
Q ss_pred HHHHHhccCC
Q 004425 518 AFQIFKGISD 527 (754)
Q Consensus 518 A~~~~~~~~~ 527 (754)
|.+.|--+..
T Consensus 346 Al~Y~~li~~ 355 (613)
T PF04097_consen 346 ALQYLYLICL 355 (613)
T ss_dssp HHHHHHGGGG
T ss_pred HHHHHHHHHH
Confidence 8888776643
No 281
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.23 E-value=22 Score=39.49 Aligned_cols=157 Identities=12% Similarity=-0.021 Sum_probs=83.7
Q ss_pred CCCcHHHHHHHhccCCCcchhHHHHHHHHH----hCC------------CCChhhhHHHHHHHHccCChhHHHHHhccCC
Q 004425 57 LFNDWPQLVKISIGSGDLKLGQAVHAFLLK----SGS------------QNDTFEANNLINLYAKFNRLDVAQKLFDGML 120 (754)
Q Consensus 57 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~------------~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 120 (754)
.....+.++.++...+.+-.-.-++..+.. .+. ....-....-|+.+.+..-++-|..+-..-.
T Consensus 282 s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~ 361 (933)
T KOG2114|consen 282 SNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQH 361 (933)
T ss_pred CccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence 334456677777666665544444444332 220 1111233455666666666666666655432
Q ss_pred CCChhhHHHHHH----HHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHH
Q 004425 121 VRSAITWTSLIK----GYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFV 196 (754)
Q Consensus 121 ~~~~~~~~~li~----~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 196 (754)
- +..+-..+.. -+-+.|++++|...|-+-... +.| ..+++-+-....+..--.+++.+.+.|+. +..-
T Consensus 362 ~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dh 433 (933)
T KOG2114|consen 362 L-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDH 433 (933)
T ss_pred C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchh
Confidence 2 2222233333 334577777777776665432 222 23445555555555566666667777754 3333
Q ss_pred HHHHHHHhHhcCCHhHHHHHhccCC
Q 004425 197 GTSLISMYFHSGCFREAENVFRGLA 221 (754)
Q Consensus 197 ~~~li~~~~~~g~~~~A~~~~~~~~ 221 (754)
-+.|+.+|.+.++.+.-.++.+...
T Consensus 434 ttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 434 TTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHhcchHHHHHHHhcCC
Confidence 4567777777777777666665544
No 282
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.15 E-value=0.22 Score=30.30 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 635 LWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 635 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
+|..+...+...|+.++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777777777788888888777777774
No 283
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.15 E-value=13 Score=36.64 Aligned_cols=64 Identities=14% Similarity=0.099 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCC---ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH
Q 004425 401 ALVDIYAKGGDLKSARMLLDGFSCK---YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP 464 (754)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 464 (754)
.-+..+.+.++.+.+.+.+.+|... ....+...+..+-.-.......+...+..+....+.|..
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 3344444455555555555555411 122344444333221123344555555555554444443
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.97 E-value=0.98 Score=39.18 Aligned_cols=53 Identities=11% Similarity=0.051 Sum_probs=32.6
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
..++.+.++.++.-+.-+.|+.++.-..-++++...|+|.+|.++++.+.+++
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 44566666666666666666666666666666666666666666666654443
No 285
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.84 E-value=4.1 Score=35.97 Aligned_cols=134 Identities=4% Similarity=-0.084 Sum_probs=81.1
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcC--CHhHHHHHhccCC
Q 004425 144 LGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSG--CFREAENVFRGLA 221 (754)
Q Consensus 144 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~ 221 (754)
++.++.+.+.+++|+...+..+++.+.+.|+.....+ ++..++-+|.......+-.+.... -..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4556666778888888888888888888887654444 455565555544443332222211 1233444444333
Q ss_pred CCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHh
Q 004425 222 YKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKF 289 (754)
Q Consensus 222 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 289 (754)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..++.-..+.
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34667778888899999998888765322 3334455667766666666555555555443
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.84 E-value=5.9 Score=34.50 Aligned_cols=88 Identities=13% Similarity=0.048 Sum_probs=47.4
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHH
Q 004425 575 CIYSGLSEGGICLFNEIEQIYGLRPILE-HFACMVDLLGRAGRLSEAMNLINSSPF-SESPLLWRTLVSVSKLMANSKFS 652 (754)
Q Consensus 575 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a 652 (754)
-.+.++.+++..++..+. -+.|... .-..-+..+.+.|++.+|+.+++++.. .|....-.+|+..|....+-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 345556666666666663 3445432 222334455667777777777776622 23444445666666555443434
Q ss_pred HHHHHHhhccCCC
Q 004425 653 ILASKRLLDLEPK 665 (754)
Q Consensus 653 ~~~~~~~~~~~p~ 665 (754)
....+++++..|+
T Consensus 97 r~~A~evle~~~d 109 (160)
T PF09613_consen 97 RRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHhcCCC
Confidence 4445555555543
No 287
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.41 E-value=18 Score=36.80 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 564 DDISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 564 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
|.-.+..++.++.-.|++++|.+..++|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 344556666777777777777777777754
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.39 E-value=1.1 Score=38.06 Aligned_cols=54 Identities=17% Similarity=0.041 Sum_probs=43.2
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
..++.++++.++..+.-+.|+.++.-..-++++...|+|+||.++++.+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 367888888888888888888888888888888888888888888887766543
No 289
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.35 E-value=12 Score=34.67 Aligned_cols=70 Identities=13% Similarity=0.246 Sum_probs=43.0
Q ss_pred HHhhcCCHHHHHHHHHhC---CCCCCHHHHH-----HHHHHHHhc-CChHHHHHHHHHhhccCCC--CcchHHHHHHHHH
Q 004425 610 LLGRAGRLSEAMNLINSS---PFSESPLLWR-----TLVSVSKLM-ANSKFSILASKRLLDLEPK--DAGSFILVSNMYA 678 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~---~~~p~~~~~~-----~l~~~~~~~-g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~ 678 (754)
.-+..+++.+|+++|+++ ....+..-|. --...|... .+.--+.+++++-.+++|. ++.-+..|..+..
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~ 242 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLD 242 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHH
Confidence 335677888899988765 2222222222 122334443 7888889999999999998 4444555655544
Q ss_pred h
Q 004425 679 G 679 (754)
Q Consensus 679 ~ 679 (754)
.
T Consensus 243 a 243 (288)
T KOG1586|consen 243 A 243 (288)
T ss_pred H
Confidence 3
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.07 E-value=0.33 Score=30.11 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhcc
Q 004425 635 LWRTLVSVSKLMANSKFSILASKRLLDL 662 (754)
Q Consensus 635 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 662 (754)
+|..|...|...|++++|+.++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886544
No 291
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.92 E-value=0.075 Score=46.34 Aligned_cols=87 Identities=11% Similarity=0.099 Sum_probs=69.3
Q ss_pred HHHHHHhccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCCCChhhHHHHHHHHhcCCChh
Q 004425 62 PQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYE 141 (754)
Q Consensus 62 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 141 (754)
..++..+.+.+.+......++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 346778888889999999999999888777889999999999999999999999884433 44456788888888888
Q ss_pred HHHHHHHHHH
Q 004425 142 SVLGIACDMY 151 (754)
Q Consensus 142 ~a~~~~~~m~ 151 (754)
++.-++.++.
T Consensus 88 ~a~~Ly~~~~ 97 (143)
T PF00637_consen 88 EAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHcc
Confidence 8888888763
No 292
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.84 E-value=25 Score=37.49 Aligned_cols=144 Identities=9% Similarity=0.015 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHccCC--CCch-hHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHh
Q 004425 295 ISVGNAIVTMYGKHGMSEEAERMFDAISE--RNLI-SWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGC 371 (754)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 371 (754)
...++.||.---....++.++.+++.+.. |... -|-.....=.+.|..+.+.++|++-+.. ++-+...+...+.-+
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 33444555433333444555666665553 3322 3444444455677777788888776643 444444444444333
Q ss_pred -cccCChHHHHHHHHHHHH-hCCCc-chhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhh
Q 004425 372 -SVCSNLELGLQLHGFAIK-HGYLS-DVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFME 439 (754)
Q Consensus 372 -~~~~~~~~a~~~~~~~~~-~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 439 (754)
...|+.+.....|+.++. .|..- ....+...|..-..++++.....+++++.+-....++....-|.+
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~ 194 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQ 194 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHH
Confidence 244666666677776666 33321 233455555555556666666666666554444444444443333
No 293
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.51 E-value=0.93 Score=29.67 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI 566 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 566 (754)
+|..+...|...|++++|+++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 466677777888888888888888877 456554
No 294
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.44 E-value=3.6 Score=40.60 Aligned_cols=134 Identities=13% Similarity=0.033 Sum_probs=71.0
Q ss_pred hhHHHHHHHHhHhcCcccChhhHHHHHHHhcc--cCC----hHHHHHHHHHHHHhCC---CcchhHHHHHHHHHHhCCCH
Q 004425 342 GGKAINGFLEFLDLGICCDSSCLATVIDGCSV--CSN----LELGLQLHGFAIKHGY---LSDVRLGTALVDIYAKGGDL 412 (754)
Q Consensus 342 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~----~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~ 412 (754)
+++.+.+++.|.+.|.+-+..+|.+....... ..+ ...+..+|+.|++... .++...+..++.. ...+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777777777666553332222 222 3455666666666321 1222333333221 11111
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcccc--hHHHHHHHH
Q 004425 413 KSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPV--TFSRLLSLSASQAC--LVRGRSLHA 488 (754)
Q Consensus 413 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~ 488 (754)
..-.+.+..+|+.+.+.|+..+.. ..+.++..+..... +..+..+++
T Consensus 156 -----------------------------e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~ 206 (297)
T PF13170_consen 156 -----------------------------EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYN 206 (297)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 112345667777777777665542 33444443333222 446778888
Q ss_pred HHHHhCCCCchhHHHHHH
Q 004425 489 YSIKTGYAADVIVGNALI 506 (754)
Q Consensus 489 ~~~~~~~~~~~~~~~~li 506 (754)
.+.+.|+++....|..+.
T Consensus 207 ~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 207 ALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHcCCccccccccHHH
Confidence 888888887776666553
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.25 E-value=0.7 Score=28.06 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD 564 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 564 (754)
.+|..+..+|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3567777777778888888888887777 4554
No 296
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.49 E-value=37 Score=37.34 Aligned_cols=208 Identities=14% Similarity=0.145 Sum_probs=105.0
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh---cCCHHHHHHHHhccCC-CChhHHHHHHHHHH----HcCChHHHH
Q 004425 479 CLVRGRSLHAYSIKTGYAADVIVGNALITMYAK---CGSIDGAFQIFKGISD-RDIVSWNAMLSAYA----LHGLGKGAL 550 (754)
Q Consensus 479 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~----~~g~~~~A~ 550 (754)
+.+.|..++....+.|. |+.... +...|.. ..+...|.++|....+ -.+.+.-.+..+|. ...+...|.
T Consensus 308 d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred cHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 44556666666666553 222222 2222222 1245566666665543 22222222222222 223566777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH-----hh--cCCHHHHHHH
Q 004425 551 LLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLL-----GR--AGRLSEAMNL 623 (754)
Q Consensus 551 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~--~g~~~~A~~~ 623 (754)
.++++..+.| .|-..--...+..+.. +.++.+...+..+.+ .|.+-....-..+.+.. .+ ..+.+.+..+
T Consensus 385 ~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 385 AYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence 7777777766 3332222233333444 556555555555544 34332211111111111 11 2245666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc-C--CchHHHHHHHHHhh
Q 004425 624 INSSPFSESPLLWRTLVSVSKLM----ANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ-G--MLDEAAKVRTTMND 695 (754)
Q Consensus 624 ~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~m~~ 695 (754)
+.+.....++.....|...+..- .+.+.|...+.++-+.. +.....++..+..- | ++..|.+.+....+
T Consensus 462 ~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 462 YSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 66665555666666666555433 36777888887777666 66777777776543 1 26788888877654
No 297
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.45 E-value=40 Score=37.62 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcc
Q 004425 226 RCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYEN 273 (754)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 273 (754)
..| ++|-.+.+.|++++|.++..+.... .......|...+..+...
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 344 4667778888888888888555433 445566777777777664
No 298
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.43 E-value=14 Score=34.31 Aligned_cols=94 Identities=7% Similarity=0.026 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHH---HHHHhcCChHHHHHHHHHhhccCCCCcc-----
Q 004425 603 HFACMVDLLGRA-GRLSEAMNLINSS-----PFSESPLLWRTLV---SVSKLMANSKFSILASKRLLDLEPKDAG----- 668 (754)
Q Consensus 603 ~~~~l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~p~~~~----- 668 (754)
++-.+.+.|... .++++|+..++.. +.+.+...-..++ ..-...+++.+|+.+|+++..-.-+|+.
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA 194 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence 334455555443 5566666666544 1111222222222 2334558899999999998875555432
Q ss_pred -hHHHH-HHHHHhcCCchHHHHHHHHHhhC
Q 004425 669 -SFILV-SNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 669 -~~~~l-~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
-|..- +-++.-.++.-.+.+.+++-.+.
T Consensus 195 KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 195 KDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 22222 22333446666666777765553
No 299
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.39 E-value=3.6 Score=39.75 Aligned_cols=58 Identities=17% Similarity=0.349 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004425 500 IVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMK 557 (754)
Q Consensus 500 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 557 (754)
.++..++..+..+|+.+.+...++++.. -|...|..+|.+|.+.|+...|+..|+++.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3445555555555555555555555533 233455555555555555555555555544
No 300
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.35 E-value=0.48 Score=26.79 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=19.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 004425 668 GSFILVSNMYAGQGMLDEAAKVRT 691 (754)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~ 691 (754)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356788889999999999988775
No 301
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.07 E-value=1.8 Score=41.77 Aligned_cols=55 Identities=18% Similarity=0.284 Sum_probs=25.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 639 LVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 639 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
++..+...|+.+.+...++++++.+|-+...|..+..+|...|+...|++.|+.+
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444444444444444
No 302
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.99 E-value=12 Score=31.16 Aligned_cols=134 Identities=13% Similarity=0.066 Sum_probs=67.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHH---HHHHHHHHhcCCHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVG---NALITMYAKCGSIDGA 518 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A 518 (754)
.|..++..++..+...+ .+..-++-++--.....+-+...+.++.+-+ -.|...+ ..++..|.+.|...+
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~se- 87 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKLSE- 87 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---H-
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcchHH-
Confidence 67777877777777654 2334444444433333343333333333322 2222211 223344444333222
Q ss_pred HHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 004425 519 FQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGL 597 (754)
Q Consensus 519 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 597 (754)
....-+..+...|+-+.-.+++.++.+ .-+++...+..+..||.+.|+..++.+++.++.+ .|+
T Consensus 88 -------------~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe-kG~ 151 (161)
T PF09205_consen 88 -------------YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE-KGL 151 (161)
T ss_dssp -------------HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-
T ss_pred -------------HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-hch
Confidence 233445666777777777777777764 2456667777777888888888888888887777 354
No 303
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.93 E-value=76 Score=40.20 Aligned_cols=308 Identities=13% Similarity=0.035 Sum_probs=157.7
Q ss_pred HHhcccCChHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHhCCCHHHHHHHHhc-CCCCChhhHHHHHHHHhhhhcCCH
Q 004425 369 DGCSVCSNLELGLQLHGFAIKHG--YLSDVRLGTALVDIYAKGGDLKSARMLLDG-FSCKYTAEFNAILSGFMEKIADDE 445 (754)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~ 445 (754)
.+-.+.+.+..|...++.-.... -......+..+...|...+++|....+... ...++ ...-|.-... .|++
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~--~g~~ 1465 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEA--SGNW 1465 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHh--hccH
Confidence 34445566666666666521100 011223344445577777777776666552 22221 1122223333 7888
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHH-HHHHHhcCCHHHHHHHHh
Q 004425 446 EDVMVLFSQQRLAGMEPD-PVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNAL-ITMYAKCGSIDGAFQIFK 523 (754)
Q Consensus 446 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~ 523 (754)
..|...|+.+.+. .|+ ..+++.++......+.++...-..+-.... ..+....++.+ +.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 8888888888865 455 566776666666666666555433333222 12222222222 333345566666655554
Q ss_pred ccCCCChhHHHHH-H-HHHHHcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH---------
Q 004425 524 GISDRDIVSWNAM-L-SAYALHGL--GKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNE--------- 590 (754)
Q Consensus 524 ~~~~~~~~~~~~l-i-~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~--------- 590 (754)
..+..+|.+. + ..+.+..+ .-.-.++.+.+.+.-+.| +.+|+..|.+..+.++.-+
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 4555566654 2 22222211 111112333333321221 2233333332222222111
Q ss_pred -HHHHhCCCCCccHHH---HHHHHHhhcCCHHHHHHHH---Hh------CC---CCCCHHHHHHHHHHHHhcCChHHHHH
Q 004425 591 -IEQIYGLRPILEHFA---CMVDLLGRAGRLSEAMNLI---NS------SP---FSESPLLWRTLVSVSKLMANSKFSIL 654 (754)
Q Consensus 591 -~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~---~~------~~---~~p~~~~~~~l~~~~~~~g~~~~a~~ 654 (754)
.....++.++....+ ....-+.+.+....+.+-+ ++ |. ...-..+|....+.++..|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 111123333322111 1111122222222222222 11 11 11237789999999999999999999
Q ss_pred HHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 655 ASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 655 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
+.-++.+.. -+..+.-.+..+...|+-..|..++++-.+..
T Consensus 1692 all~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1692 ALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 988888876 35689999999999999999999998776543
No 304
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.91 E-value=11 Score=35.07 Aligned_cols=45 Identities=16% Similarity=0.071 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHhhccCCCC------cchHHHHHHHHHhcCCchHHHHHHHH
Q 004425 648 NSKFSILASKRLLDLEPKD------AGSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 648 ~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
+.++|+++|++.+++--++ ...|...+++|.+..+++||...+.+
T Consensus 125 ~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 125 KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 4455555555554432111 12344455556666666665555543
No 305
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.90 E-value=0.65 Score=28.11 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=24.2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 668 GSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
..+..+|.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4688999999999999999999998754
No 306
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.45 E-value=17 Score=32.02 Aligned_cols=122 Identities=12% Similarity=0.094 Sum_probs=75.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHH--HHHHHhhcCC
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFAC--MVDLLGRAGR 616 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~ 616 (754)
+++.+..++|+.-|.++.+.|...=.+ ............|+...|...|+++-.+..++.-..-... -.-++...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356677888888888888776553222 2222333456778888888888888654222211111111 2234566788
Q ss_pred HHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Q 004425 617 LSEAMNLINSSPFSE---SPLLWRTLVSVSKLMANSKFSILASKRLLD 661 (754)
Q Consensus 617 ~~~A~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 661 (754)
+++....++-+..+. ....-.+|.-+-.+.|++..|...|+++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888877777663322 244556677777788888888888888777
No 307
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=88.30 E-value=33 Score=35.22 Aligned_cols=80 Identities=14% Similarity=0.210 Sum_probs=61.1
Q ss_pred CCChhhhHHHHHHHHccCChhHHHHHhccCCCCC---hhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 004425 90 QNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRS---AITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVIL 166 (754)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 166 (754)
+.|...|-.||.-|...+..++.++++++|..|- ..+|..-|++-....++.....+|.+....... ...|..-|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHHH
Confidence 4567788999999999999999999999997763 357888888888888899999999888776544 44455544
Q ss_pred HHhcc
Q 004425 167 EACSL 171 (754)
Q Consensus 167 ~~~~~ 171 (754)
.-..+
T Consensus 117 ~YIRr 121 (660)
T COG5107 117 EYIRR 121 (660)
T ss_pred HHHHh
Confidence 44433
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.24 E-value=6.7 Score=35.41 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI--SILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
+..+..-|++.|+.++|++.|.++.+....|... .+..++..+...+++..+..+..++..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444555555555555555555555544333332 344455555555555555555554443
No 309
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.51 E-value=93 Score=39.52 Aligned_cols=338 Identities=13% Similarity=0.077 Sum_probs=156.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHc-cCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccC-hhhHHHHHHHhccc
Q 004425 297 VGNAIVTMYGKHGMSEEAERMFDA-ISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCD-SSCLATVIDGCSVC 374 (754)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 374 (754)
.|..+...|+.-+++|+..-+... ...++ ...-|--....|++..|...|+.+.+. .|+ ..+++.++......
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~ 1496 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAI 1496 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcc
Confidence 344455577777777776666552 32222 223344456678888888888888765 344 56677777776666
Q ss_pred CChHHHHHHHHHHHHhCCCcchhH-HHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHH-HH-HHhhhhcCCHHHHHHH
Q 004425 375 SNLELGLQLHGFAIKHGYLSDVRL-GTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAI-LS-GFMEKIADDEEDVMVL 451 (754)
Q Consensus 375 ~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~~~~~~~~A~~~ 451 (754)
|.++...-..+-..... .+.... ++.=+.+--+.++++....... ..+..+|.+. +. ...+....+.-.-.+.
T Consensus 1497 ~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~ 1572 (2382)
T KOG0890|consen 1497 QHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDL 1572 (2382)
T ss_pred cchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHH
Confidence 66666555333333221 222222 2222333355666666665554 4455555554 22 2222001111111122
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----
Q 004425 452 FSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---- 527 (754)
Q Consensus 452 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 527 (754)
.+.+++.-+. -+.+|+..|.+ ...|..++....-+. .+.-.+.......
T Consensus 1573 i~~~r~~~i~--------~lsa~s~~~Sy------------------~~~Y~~~~kLH~l~e-l~~~~~~l~~~s~~~~s 1625 (2382)
T KOG0890|consen 1573 IENSRELVIE--------NLSACSIEGSY------------------VRSYEILMKLHLLLE-LENSIEELKKVSYDEDS 1625 (2382)
T ss_pred HHHHHHHhhh--------hHHHhhccchH------------------HHHHHHHHHHHHHHH-HHHHHHHhhccCccccc
Confidence 2222222111 11122222211 122333333222211 1111111111111
Q ss_pred -CChhHHHHHHHHHHHcCChHHHHHHHHH-HHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC
Q 004425 528 -RDIVSWNAMLSAYALHGLGKGALLLFEE-MKRE----GFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI 600 (754)
Q Consensus 528 -~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 600 (754)
.+..-|-.-+.--....+..+-+--+++ +... +++-. ..+|....+.+..+|.++.|...+-.+.+ .+ .
T Consensus 1626 ~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e-~r-~-- 1701 (2382)
T KOG0890|consen 1626 ANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE-SR-L-- 1701 (2382)
T ss_pred cccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh-cc-c--
Confidence 1112232222211111112222211222 1221 22222 23677777777778888888877766655 22 2
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC----------CCCCCHHHHHHHHHH--------H-HhcCC--hHHHHHHHHHh
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS----------PFSESPLLWRTLVSV--------S-KLMAN--SKFSILASKRL 659 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~p~~~~~~~l~~~--------~-~~~g~--~~~a~~~~~~~ 659 (754)
...+--.+..+-..|+...|+.++++. +.++.+..-+.++.. + ...|+ .+.-.+.|.++
T Consensus 1702 ~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~ 1781 (2382)
T KOG0890|consen 1702 PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDA 1781 (2382)
T ss_pred chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 334556677777888888888877643 111223333333222 1 12233 34456778888
Q ss_pred hccCCCCcchHHHHH
Q 004425 660 LDLEPKDAGSFILVS 674 (754)
Q Consensus 660 ~~~~p~~~~~~~~l~ 674 (754)
.+..|.....|+.++
T Consensus 1782 ~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1782 KAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHcccccCceeeHH
Confidence 888887666666666
No 310
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.24 E-value=21 Score=33.43 Aligned_cols=59 Identities=8% Similarity=-0.049 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 637 RTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 637 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
..+.+++...|++-++++....++..+|.|..+|...+.+.+..-+.++|..-+++..+
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 33445555678888899999999999999999999999999888888888888887655
No 311
>PRK09687 putative lyase; Provisional
Probab=86.82 E-value=34 Score=33.70 Aligned_cols=73 Identities=10% Similarity=0.038 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004425 395 DVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLS 474 (754)
Q Consensus 395 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 474 (754)
+..+....+.++.+.|+..-...+.+.+..++ .....+.++.. .|.. +|+..+..+.+. .||...-...+.+|
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~--ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGE--LGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHh--cCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 44444444555555554332222223322222 12234444444 5553 566666666653 34554444444433
No 312
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.48 E-value=30 Score=35.44 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC----CcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 632 SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK----DAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 632 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
...+|..+...+++.|+++.|...+.++...++. .+.....-+.++...|+.++|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999987632 456777789999999999999999887766
No 313
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.05 E-value=14 Score=32.57 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=21.5
Q ss_pred cCChHHHHHHHHccCCCCchhHHHHH-----HHHHhcCChhHHHHHHHHhHhc
Q 004425 308 HGMSEEAERMFDAISERNLISWTALI-----SGYVRSGHGGKAINGFLEFLDL 355 (754)
Q Consensus 308 ~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~ 355 (754)
.+..++|+.-|..+.+.+-..|-.|. ....+.|+...|+..|.+.-..
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 34444444444444443333333322 2234455555555555555443
No 314
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.94 E-value=1.5 Score=38.64 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCC----chHHHHHHHHH
Q 004425 649 SKFSILASKRLLDLEPKDAGSFILVSNMYAGQGM----LDEAAKVRTTM 693 (754)
Q Consensus 649 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m 693 (754)
+++|+.-+++++.++|+...++..+|++|...|. -.+|...|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 5567778888999999999999999999888764 33444555444
No 315
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.90 E-value=24 Score=31.22 Aligned_cols=131 Identities=13% Similarity=0.062 Sum_probs=66.6
Q ss_pred HHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC
Q 004425 180 QIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPN 259 (754)
Q Consensus 180 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 259 (754)
+....+.+.|+.++...+..+|+.+.+.|++.....++ +.++-+|
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll-----------------------------------q~~Vi~D 59 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL-----------------------------------QYHVIPD 59 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----------------------------------hhcccCC
Confidence 34455566778888888888888888877765554444 3444444
Q ss_pred cchHHHHHHHHhccCCchHHHHHHHHHHHh-cCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHh
Q 004425 260 DYTFTNVISVCYENLGVEEGKQLHGLAVKF-GVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVR 338 (754)
Q Consensus 260 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 338 (754)
.......+-.+.. ....+.++=-+|.++ + ..+..+++.+...|++-+|.++.+....-+......++.+-.+
T Consensus 60 Sk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~ 132 (167)
T PF07035_consen 60 SKPLACQLLSLGN--QYPPAYQLGLDMLKRLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAAN 132 (167)
T ss_pred cHHHHHHHHHhHc--cChHHHHHHHHHHHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHH
Confidence 4443333322211 122222222222221 1 0134455556666677777766666544433444445555555
Q ss_pred cCChhHHHHHHHHh
Q 004425 339 SGHGGKAINGFLEF 352 (754)
Q Consensus 339 ~g~~~~A~~~~~~m 352 (754)
.+|..--..+|+-.
T Consensus 133 ~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 133 SNDDQLFYAVFRFF 146 (167)
T ss_pred cCCHHHHHHHHHHH
Confidence 55544433333333
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.86 E-value=4 Score=37.00 Aligned_cols=73 Identities=16% Similarity=0.124 Sum_probs=52.0
Q ss_pred hcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC----CcchHHHHHHHHHhcCCchH
Q 004425 613 RAGRLSEAMNLINSSPFSE---SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK----DAGSFILVSNMYAGQGMLDE 685 (754)
Q Consensus 613 ~~g~~~~A~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 685 (754)
+.|+ ++|.+.|-.+...| ++.....|.. +....|.++++.++.+++++.+. |+..+..|+.+|.+.|++++
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 4444 55666665553333 4555555544 44578999999999999997543 57889999999999999998
Q ss_pred HH
Q 004425 686 AA 687 (754)
Q Consensus 686 a~ 687 (754)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.81 E-value=1.2 Score=28.57 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 668 GSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999988755
No 318
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.68 E-value=12 Score=33.73 Aligned_cols=35 Identities=11% Similarity=0.192 Sum_probs=24.4
Q ss_pred HHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHH
Q 004425 642 VSKLMANSKFSILASKRLLDLEPKDAGSFILVSNM 676 (754)
Q Consensus 642 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 676 (754)
+|-....++.|+.-|+++++.+|....+-...+.+
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 45555678888888999999988865554444433
No 319
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.63 E-value=9.8 Score=38.99 Aligned_cols=125 Identities=18% Similarity=0.133 Sum_probs=80.7
Q ss_pred HHHHHHcCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcC
Q 004425 537 LSAYALHGLGKGALL-LFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAG 615 (754)
Q Consensus 537 i~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 615 (754)
|.--...|+...|-+ ++.-+....-.|+.+-+.+.| ..+.|.++.+.+.+..... -+.....+..|++..+.+.|
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchh
Confidence 333445677766654 444444444456655444443 4677888888888877654 34455667778888888888
Q ss_pred CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 616 RLSEAMNLINSS-P-FSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 616 ~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
++++|...-+.| + .-.++.+...-.......|-++++...+++++.++|.
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 888888877766 1 1124555555555555667777888888888887766
No 320
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=85.58 E-value=1.4 Score=45.06 Aligned_cols=87 Identities=7% Similarity=0.067 Sum_probs=68.2
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHH
Q 004425 609 DLLGRAGRLSEAMNLINSS-PFSESPLLWRTL-VSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEA 686 (754)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 686 (754)
+-+.+.+.++.|..++.++ ...|+...+.+. ..++.+.+++..|+.-+.++++++|.....|+..+.++...+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 3344566777888777654 566764444333 36777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 004425 687 AKVRTTMND 695 (754)
Q Consensus 687 ~~~~~~m~~ 695 (754)
...++....
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 999986543
No 321
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.41 E-value=0.88 Score=27.23 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 669 SFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 669 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++..++.+|.+.|++++|.+.++++.+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456677777777777777777777654
No 322
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.37 E-value=1.6 Score=26.38 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 668 GSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998754
No 323
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.19 E-value=0.53 Score=45.71 Aligned_cols=88 Identities=17% Similarity=0.214 Sum_probs=64.9
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 004425 614 AGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRT 691 (754)
Q Consensus 614 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 691 (754)
.|.+++|++.+... ...| ....+..-..++...++...|++-+..+++++|+.+..|-..+.+....|.|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 45677777776543 3333 455555556667777888888888888888888888888888888888888888888888
Q ss_pred HHhhCCCccC
Q 004425 692 TMNDLRLSKE 701 (754)
Q Consensus 692 ~m~~~~~~~~ 701 (754)
.....+....
T Consensus 207 ~a~kld~dE~ 216 (377)
T KOG1308|consen 207 LACKLDYDEA 216 (377)
T ss_pred HHHhccccHH
Confidence 8777665443
No 324
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.85 E-value=4.6 Score=38.93 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=73.7
Q ss_pred HhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCCC---------ChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCC
Q 004425 86 KSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVR---------SAITWTSLIKGYLDDGDYESVLGIACDMYRSEEK 156 (754)
Q Consensus 86 ~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 156 (754)
..|...++.+...++..-....+++++...+-...+. +..+|-.+ +-.-+++.++.++..=+..|+-
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccc
Confidence 3455666667777777777777888888877665321 23333332 2334677899999888899999
Q ss_pred CChhhHHHHHHHhccCCChHHHHHHHHHHHHHC
Q 004425 157 FNEHTCSVILEACSLLEDRIFGEQIHAFAIKSG 189 (754)
Q Consensus 157 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 189 (754)
||.++++.+|+.+.+.+++..|.++.-+|....
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888877665
No 325
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.80 E-value=2.1 Score=29.35 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=27.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHH
Q 004425 638 TLVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 638 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 672 (754)
.+.-++.+.|+++.|.+..+.+++++|+|..+-..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45567789999999999999999999997665443
No 326
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.78 E-value=1.6 Score=25.35 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 636 WRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 636 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
|..+...+...|+.+.|...++++++++|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 344444444555555555555555554443
No 327
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.42 E-value=11 Score=34.03 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004425 500 IVGNALITMYAKCGSIDGAFQIFKGISDRD------IVSWNAMLSAYALHGLGKGALLLFEEMKR 558 (754)
Q Consensus 500 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 558 (754)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......|++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456778899999999999999999987643 23566788888889999999888887764
No 328
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=84.36 E-value=12 Score=31.41 Aligned_cols=45 Identities=9% Similarity=0.067 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhhc-cCCC-CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 649 SKFSILASKRLLD-LEPK-DAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 649 ~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
.++++.+++.+++ -.|+ .-...+.|+-.+.+.|+++.+.+..+.+
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 3444445555543 2232 1223333444455555555555555443
No 329
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.08 E-value=6.6 Score=26.93 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=36.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 004425 669 SFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMKLKVK 745 (754)
Q Consensus 669 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 745 (754)
....++-.+.+.|++++|.+..+.+.+. .|...+.....+.+..+|.+.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 4567888999999999999999987652 44555555556666668888773
No 330
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.93 E-value=53 Score=36.14 Aligned_cols=149 Identities=13% Similarity=0.095 Sum_probs=76.4
Q ss_pred HcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 542 LHGLGKGALLLFEEMKR-------EGFAPDDISILGVLQACIYSG-----LSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 542 ~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
...+.+.|+.+|+.+.+ .| +......+..+|.+.. +.+.|..++.+..+ .|. |+...+ +..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g~-~~a~~~--lg~ 333 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LGN-PDAQYL--LGV 333 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cCC-chHHHH--HHH
Confidence 34455555555555544 44 2223444555555532 44556777666655 232 222222 222
Q ss_pred HHhh---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc-C
Q 004425 610 LLGR---AGRLSEAMNLINSSPFSESPLLWRTLVSVSK----LMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ-G 681 (754)
Q Consensus 610 ~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g 681 (754)
++.. ..+...|.++|..............+...+. ...+.+.|...++++-+.+ ++.+...++..+.-. +
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~ 411 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVG 411 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccc
Confidence 2222 1345677777765533333333222222222 2347778888888887777 234455555544333 7
Q ss_pred CchHHHHHHHHHhhCCCc
Q 004425 682 MLDEAAKVRTTMNDLRLS 699 (754)
Q Consensus 682 ~~~~a~~~~~~m~~~~~~ 699 (754)
+++.+.-.+..+.+.|.+
T Consensus 412 ~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYE 429 (552)
T ss_pred cccHHHHHHHHHHHhhhh
Confidence 777777777777665554
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.68 E-value=1.9 Score=25.73 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhccCCCC
Q 004425 637 RTLVSVSKLMANSKFSILASKRLLDLEPKD 666 (754)
Q Consensus 637 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 666 (754)
-.+..++...|+.++|...++++++..|++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 345667777889999999999999888873
No 332
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.48 E-value=1.3 Score=38.37 Aligned_cols=85 Identities=15% Similarity=0.074 Sum_probs=59.5
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHH
Q 004425 165 ILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMA 244 (754)
Q Consensus 165 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 244 (754)
+++.+.+.+.......+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666677777777777777766667788899999999999888888888884332 3345566667777777777
Q ss_pred HHHHHHhH
Q 004425 245 FHVFVHLL 252 (754)
Q Consensus 245 ~~~~~~m~ 252 (754)
.-+|.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 77776654
No 333
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.34 E-value=7.6 Score=30.26 Aligned_cols=63 Identities=10% Similarity=0.019 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHH
Q 004425 139 DYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLIS 202 (754)
Q Consensus 139 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 202 (754)
+.-++.+-++.+....+.|++....+.|++|.+.+|+..|.++++-++... ..+..+|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 445677777888888889999999999999999999999999998776332 124446665554
No 334
>PHA02875 ankyrin repeat protein; Provisional
Probab=83.15 E-value=66 Score=33.93 Aligned_cols=148 Identities=8% Similarity=0.050 Sum_probs=65.5
Q ss_pred HHHhHhcCCHhHHHHHhccCCCC----CcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcch--HHHHHHHHhccC
Q 004425 201 ISMYFHSGCFREAENVFRGLAYK----DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYT--FTNVISVCYENL 274 (754)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~ 274 (754)
+...++.|+.+.+..+++.-... +..-++ .+...+..|+. ++++.+.+.|..|+... -.+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 44455667777666666543221 111122 23333444554 34444555665554332 123344444556
Q ss_pred CchHHHHHHHHHHHhcCCCChh--HHHHHHHHHHhcCChHHHHHHHHccCCCCch---hHHHHHHHHHhcCChhHHHHHH
Q 004425 275 GVEEGKQLHGLAVKFGVVREIS--VGNAIVTMYGKHGMSEEAERMFDAISERNLI---SWTALISGYVRSGHGGKAINGF 349 (754)
Q Consensus 275 ~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~ 349 (754)
+.+.+.. +.+.|..++.. ...+.+...+..|+.+-+.-+++.-..++.. ...+.+...+..|+. ++.
T Consensus 147 ~~~~v~~----Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv 218 (413)
T PHA02875 147 DIKGIEL----LIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIV 218 (413)
T ss_pred CHHHHHH----HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHH
Confidence 6544333 33444433221 1122334445566666666555544433221 112333333444443 334
Q ss_pred HHhHhcCcccCh
Q 004425 350 LEFLDLGICCDS 361 (754)
Q Consensus 350 ~~m~~~g~~p~~ 361 (754)
+-+.+.|..++.
T Consensus 219 ~~Ll~~gad~n~ 230 (413)
T PHA02875 219 RLFIKRGADCNI 230 (413)
T ss_pred HHHHHCCcCcch
Confidence 444556655543
No 335
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.52 E-value=89 Score=35.00 Aligned_cols=51 Identities=12% Similarity=0.192 Sum_probs=25.7
Q ss_pred HcCChhHHHHHHHHhHHCCC---------CCCcchHHHHHHHHh--ccCCchHHHHHHHHHH
Q 004425 237 KAGESEMAFHVFVHLLSSDF---------EPNDYTFTNVISVCY--ENLGVEEGKQLHGLAV 287 (754)
Q Consensus 237 ~~g~~~~A~~~~~~m~~~g~---------~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~ 287 (754)
+.+..+++++..+++..... .|-..+|..+++.++ ..|+++.+.+.++++.
T Consensus 191 ~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 191 RRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred cCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445666666665532111 223345556665554 4556556665555543
No 336
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.97 E-value=93 Score=34.85 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=34.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhccC---CCCc-chH-----HHHHHHHHhcCCchHHHHHHHHHh
Q 004425 638 TLVSVSKLMANSKFSILASKRLLDLE---PKDA-GSF-----ILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 638 ~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~-~~~-----~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
+++..-.-.|+..+..........+. |+.. ..| ..+.+.|...|+.++|..++++..
T Consensus 539 ~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 539 NLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 34444444677777666655555433 3312 233 245556888899999999887653
No 337
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.81 E-value=33 Score=31.03 Aligned_cols=91 Identities=11% Similarity=-0.007 Sum_probs=63.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc
Q 004425 606 CMVDLLGRAGRLSEAMNLINSSPFSESPLLWR-----TLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 680 (754)
.+...+..+|++++|+.-++..-..|....+. -|.+.....|..++|...+....+-.= .+..-...|+++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 45667788999999999998553233222333 344566677888888877665433211 233467889999999
Q ss_pred CCchHHHHHHHHHhhCC
Q 004425 681 GMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 681 g~~~~a~~~~~~m~~~~ 697 (754)
|+-++|+..|++..+..
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999876644
No 338
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.73 E-value=92 Score=34.66 Aligned_cols=47 Identities=13% Similarity=0.275 Sum_probs=26.4
Q ss_pred HHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChh
Q 004425 196 VGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESE 242 (754)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 242 (754)
+....|+.+.-.|++++|-...-.|...+..-|---+..+...++..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 44455555555666666666666665555555555555555554443
No 339
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.14 E-value=14 Score=35.81 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=74.8
Q ss_pred hcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC-C------CchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccCh
Q 004425 289 FGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE-R------NLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDS 361 (754)
Q Consensus 289 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 361 (754)
.|.+....+...++..-....+++.++..+-++.. + +...+ +.++ ++-.-++++++.++..=+.-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~ir-lllky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHH-HHHccChHHHHHHHhCcchhccccch
Confidence 45555666666777766667788888888777654 2 22222 2223 33344677999999999999999999
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHHhC
Q 004425 362 SCLATVIDGCSVCSNLELGLQLHGFAIKHG 391 (754)
Q Consensus 362 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 391 (754)
++++.+|..+.+.+++..|.++.-.|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999998888877654
No 340
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.02 E-value=4.2 Score=37.63 Aligned_cols=84 Identities=7% Similarity=-0.034 Sum_probs=42.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCccH-HHHHHHHHhhcCCHHHHHHHHH-hCCCCCCHHHH-HHHHHHHHhcCChHH
Q 004425 575 CIYSGLSEGGICLFNEIEQIYGLRPILEH-FACMVDLLGRAGRLSEAMNLIN-SSPFSESPLLW-RTLVSVSKLMANSKF 651 (754)
Q Consensus 575 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~-~~~~~p~~~~~-~~l~~~~~~~g~~~~ 651 (754)
|.....++.|+..|.+.. -+.|++.+ |..-+.++.+..+++.+..--. ...+.|+..-- ..+..+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 455556666666555553 45566543 3344555555555555544332 22444443222 223333344456666
Q ss_pred HHHHHHHhhc
Q 004425 652 SILASKRLLD 661 (754)
Q Consensus 652 a~~~~~~~~~ 661 (754)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 341
>PRK09687 putative lyase; Provisional
Probab=80.44 E-value=62 Score=31.85 Aligned_cols=75 Identities=11% Similarity=-0.018 Sum_probs=43.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004425 497 ADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACI 576 (754)
Q Consensus 497 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 576 (754)
++..+-...+.++++.|+....-.+.+.+..+++ .-..+.++...|.. +|+..+.++.+ -.||...-...+.+|.
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKLK 278 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHHh
Confidence 4555566666777777775444444444444442 23566777777774 67777777776 3356655555555543
No 342
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.99 E-value=4.5 Score=25.66 Aligned_cols=27 Identities=33% Similarity=0.386 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKR 558 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 558 (754)
+++.|...|...|++++|+.++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 456666666666666666666666553
No 343
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.93 E-value=16 Score=28.92 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 548 GALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 548 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
+..+-++.+....+.|+.....+.|.||.+.+++.-|+++|+.++.+.|-. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 445556666677788999999999999999999999999999998864433 336665554
No 344
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.90 E-value=11 Score=29.82 Aligned_cols=62 Identities=10% Similarity=-0.004 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHH
Q 004425 140 YESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLIS 202 (754)
Q Consensus 140 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 202 (754)
.-+..+-++.+....+.|++....+.|++|.+.+|+..|.++++-++..- .+...+|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 33566677777778888899999999999999999998888888776542 222226665554
No 345
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.79 E-value=85 Score=33.04 Aligned_cols=171 Identities=13% Similarity=0.068 Sum_probs=91.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004425 497 ADVIVGNALITMYAKCGSIDGAFQIFKGISD--RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQA 574 (754)
Q Consensus 497 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 574 (754)
.|....-+++..++..-++.-.+-+..+|.. .+-..|..++.+|... ..++-..+|+++.+ ..-|.+.+..-+..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHH
Confidence 3444445566666666566655556555543 3445666777777766 45666777777776 33444444444444
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCC------ccHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 004425 575 CIYSGLSEGGICLFNEIEQIYGLRPI------LEHFACMVDLLGRAGRLSEAMNLINSS----PFSESPLLWRTLVSVSK 644 (754)
Q Consensus 575 ~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~ 644 (754)
+...++.+.+..+|.++.. .+.|. .+.|.-++... ..+.+..+.+..++ +..--...+..+-.-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 4444677777777777655 33332 12344443322 23444444444433 22122333333334555
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHH
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVS 674 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 674 (754)
...|+.+|++++..+++.+..|.-+-..++
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i 246 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEII 246 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHH
Confidence 566777777777777777665544433333
No 346
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=79.44 E-value=2.1 Score=26.12 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=8.2
Q ss_pred cHHHHHHHHHhhcCCHHHH
Q 004425 602 EHFACMVDLLGRAGRLSEA 620 (754)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A 620 (754)
..|..+..+|...|++++|
T Consensus 14 ~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 14 EAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHCcCHHhh
Confidence 3444444444444444444
No 347
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=79.38 E-value=4 Score=31.84 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=19.3
Q ss_pred HHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 655 ASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 655 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
.+++.++.+|+|...-..++..+...|++++|.+.+-.+
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~ 48 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLEL 48 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344445555555555555555555555555555554444
No 348
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=79.11 E-value=27 Score=38.25 Aligned_cols=111 Identities=21% Similarity=0.220 Sum_probs=63.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcC
Q 004425 539 AYALHGLGKGALLLFEEMKREGFAPDDI---SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAG 615 (754)
Q Consensus 539 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 615 (754)
.|...+..+.|.+.|++.-+ +.|+.. .+..|+.+-.+ .++...++ .. .|+ .|-.+++|.|
T Consensus 296 ~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~El----q~-Igm--------kLn~LlgrKG 358 (1226)
T KOG4279|consen 296 NYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLEL----QQ-IGM--------KLNSLLGRKG 358 (1226)
T ss_pred CCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHHH----HH-HHH--------HHHHHhhccc
Confidence 34445556677777777776 666654 23344433222 11111111 11 111 2445667888
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHH
Q 004425 616 RLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNM 676 (754)
Q Consensus 616 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 676 (754)
.++.-.++++-. +++.+-...+|+.+|.++.++++++.|...-.-..+.++
T Consensus 359 ~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni 409 (1226)
T KOG4279|consen 359 ALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENI 409 (1226)
T ss_pred hHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHHH
Confidence 887777766532 345555567899999999999999998744333333333
No 349
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=79.08 E-value=10 Score=37.17 Aligned_cols=88 Identities=11% Similarity=0.081 Sum_probs=70.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 606 CMVDLLGRAGRLSEAMNLINSS----PFSE--SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
-=++-|.+..++..|...|.+. ...| +...|+.-..+-...||+..++.-..+++.++|.+.-+|..=+.++..
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 3355677888899999888654 2234 366666666666777999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHH
Q 004425 680 QGMLDEAAKVRTTM 693 (754)
Q Consensus 680 ~g~~~~a~~~~~~m 693 (754)
..++++|..+.++.
T Consensus 166 Le~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 166 LERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHhhh
Confidence 99988887776653
No 350
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.56 E-value=24 Score=31.41 Aligned_cols=103 Identities=10% Similarity=0.034 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH----hCCCCCc-cHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004425 568 ILGVLQACIYSGLSEGGICLFNEIEQI----YGLRPIL-EHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSV 642 (754)
Q Consensus 568 ~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 642 (754)
|...|.-+++.....++.++++....+ ..+.|+. ..+.|+..+|...+.+ .||..-
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l------------~~d~~~------- 91 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL------------TPDTAE------- 91 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---------------HHH-------
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh------------cCChHH-------
Confidence 333444444444444555555444432 2456664 5666777766654421 122110
Q ss_pred HHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 643 SKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 643 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
....+++|...|+++.+.+|+|......| .+. ++|-++..+...++.
T Consensus 92 --A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL-e~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 92 --AEEYFEKATEYFQKAVDEDPNNELYRKSL-EMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHH-TT-HHHHHHH-HHH------HTHHHHHHHHHHSSS
T ss_pred --HHHHHHHHHHHHHHHHhcCCCcHHHHHHH-HHH------HhhHHHHHHHHHHHh
Confidence 11135667888889999999966443333 222 234455555544443
No 351
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.28 E-value=7.6 Score=37.16 Aligned_cols=59 Identities=15% Similarity=0.007 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 636 WRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 636 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
.+-....|...|.+.+|.++.++++.++|-+...+..|.++|+..|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456788899999999999999999999999999999999999999888888888874
No 352
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.27 E-value=44 Score=28.82 Aligned_cols=48 Identities=23% Similarity=0.149 Sum_probs=25.7
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 004425 578 SGLSEGGICLFNEIEQIYGLRPIL-EHFACMVDLLGRAGRLSEAMNLINSSP 628 (754)
Q Consensus 578 ~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 628 (754)
.++.+++..+++.|. -+.|+. +.-..-+-.+...|++++|..++++..
T Consensus 23 ~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 23 SADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred cCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhh
Confidence 556666666666663 344442 122223344556666666666666663
No 353
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.10 E-value=21 Score=28.01 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHH
Q 004425 546 GKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMV 608 (754)
Q Consensus 546 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 608 (754)
.-++.+-++.+....+.|+.....+.+.||.+.+++.-|.++|+.++.+.|. +...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 3455566667777778899999999999999999999999999988764333 333455443
No 354
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.87 E-value=7.9 Score=35.39 Aligned_cols=64 Identities=13% Similarity=0.069 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 604 FACMVDLLGRAGRLSEAMNLIN-SSPFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~-~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
...-+.-+.+.+.+.+|+...+ .+..+| |...-..|...++..|++++|..-++-+-++.|++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 4445667778888888888775 444555 666777788888899999999999988888888854
No 355
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.28 E-value=58 Score=30.98 Aligned_cols=195 Identities=11% Similarity=0.070 Sum_probs=108.2
Q ss_pred CCCCchhHHHHHHHHH-HhcCCHHHHHHHHhccCC----CC---hhHHHHHHHHHHHcCChHHHHHHHHHHHH---cCCC
Q 004425 494 GYAADVIVGNALITMY-AKCGSIDGAFQIFKGISD----RD---IVSWNAMLSAYALHGLGKGALLLFEEMKR---EGFA 562 (754)
Q Consensus 494 ~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~----~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~ 562 (754)
+-.||+..-|...+.- .+..++++|+.-|++..+ +. ..+...+|..+.+.|++++-++.|.+|+. ..+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3345554444332211 233466777777766542 11 23445577777788888888877777763 2222
Q ss_pred CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh----CCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC----C---C
Q 004425 563 PD--DISILGVLQACIYSGLSEGGICLFNEIEQIY----GLRPILEHFACMVDLLGRAGRLSEAMNLINSS----P---F 629 (754)
Q Consensus 563 p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~---~ 629 (754)
-| ..+.+.++.-.+...+.+--.++|+.-.+.. +-+....+-.-|...|...|.+.+-.++++.+ . -
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 22 2356666666665555555555554433321 11222233446677777777777766666554 0 0
Q ss_pred CCC-------HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC--CcchHHHH----HHHHHhcCCchHHHH
Q 004425 630 SES-------PLLWRTLVSVSKLMANSKFSILASKRLLDLEPK--DAGSFILV----SNMYAGQGMLDEAAK 688 (754)
Q Consensus 630 ~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l----~~~~~~~g~~~~a~~ 688 (754)
+.| ..+|..-+..|..+.+-+.-..++++++.+..- +|.....+ +..+.+.|+|++|--
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 011 234455567777788888888899988876543 22222222 224677788888864
No 356
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=77.00 E-value=19 Score=37.11 Aligned_cols=128 Identities=10% Similarity=0.085 Sum_probs=79.1
Q ss_pred HhcCCHHHHH-HHHhccCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004425 510 AKCGSIDGAF-QIFKGISD----RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGG 584 (754)
Q Consensus 510 ~~~g~~~~A~-~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 584 (754)
...|++-.|- ++|..+.. |+.+...+.| +...|+++.+...+...... +.....+...++....+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3456766554 44444432 4555444444 45679999999888776542 344567888899999999999999
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 004425 585 ICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS--PFSESPLLWRTLVSV 642 (754)
Q Consensus 585 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 642 (754)
...-..|..+ .++ +.+....-...-...|-++++.-.++++ -.+|....|-.++..
T Consensus 377 ~s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 377 LSTAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 9998888662 332 2222222222233456788888888876 223444555555544
No 357
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=75.41 E-value=44 Score=34.60 Aligned_cols=120 Identities=11% Similarity=-0.010 Sum_probs=59.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHHhCCC--CCccHHHHHHHHHhh
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPDDI--SILGVLQACI--YSGLSEGGICLFNEIEQIYGLR--PILEHFACMVDLLGR 613 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~ 613 (754)
+...+++..|.++|+++.+. +.++.. .+..+..+|. ..-++++|.+.++..... ... -....+..++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~-~~~l~~~~~~l~~~~~~~~~ 218 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR-DKALNQEREGLKELVEVLKA 218 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-hhhhHhHHHHHHHHHHHHHH
Confidence 34667888888888888876 555444 3334444443 455677788888776552 111 111222233322222
Q ss_pred cCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh--cCChHHHHHHHHHhhc
Q 004425 614 AGRLSEAMNLINSSPFSES-PLLWRTLVSVSKL--MANSKFSILASKRLLD 661 (754)
Q Consensus 614 ~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~ 661 (754)
...+....+....-..++. ..+..-+.++.++ .|+++.|...+-+++|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 219 LESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2222222111111111111 2233344455543 4788888877776665
No 358
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=75.20 E-value=8.1 Score=40.70 Aligned_cols=100 Identities=19% Similarity=0.119 Sum_probs=73.8
Q ss_pred HhcCCHHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHH
Q 004425 576 IYSGLSEGGICLFNEIEQIYGLRPI--LEHFACMVDLLGRAGRLSEAMNLINSS-P-FSESPLLWRTLVSVSKLMANSKF 651 (754)
Q Consensus 576 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~ 651 (754)
...|+...|.+.+.... ...|. ......|..++.+.|...+|-.++... . ....+.++.++.+++....|++.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 45678888888887773 34443 234556777788888888888887643 2 23356777888899999999999
Q ss_pred HHHHHHHhhccCCCCcchHHHHHHHHH
Q 004425 652 SILASKRLLDLEPKDAGSFILVSNMYA 678 (754)
Q Consensus 652 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 678 (754)
|++.++++++++|+++..-..|-.+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999998887766655544
No 359
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=74.99 E-value=94 Score=31.93 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=49.7
Q ss_pred CHHHHHHH---HHHHHhcCChHHHHHHHHHhhccCCC-CcchHHHHHHHHH-hcCCchHHHHHHHHHhh
Q 004425 632 SPLLWRTL---VSVSKLMANSKFSILASKRLLDLEPK-DAGSFILVSNMYA-GQGMLDEAAKVRTTMND 695 (754)
Q Consensus 632 ~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 695 (754)
|...|.++ +..+.+.|-+..|.+..+-++.++|. |+-.-...++.|+ +.++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 45555554 45667889999999999999999999 8887777777776 66788777777776544
No 360
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=74.13 E-value=18 Score=34.60 Aligned_cols=80 Identities=25% Similarity=0.237 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEE
Q 004425 637 RTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHF 716 (754)
Q Consensus 637 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~ 716 (754)
.++-.++.+.++++.|.+..++++.++|+++....-.|-+|.+.|.+.-|..-++...+...
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P------------------ 246 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP------------------ 246 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC------------------
Confidence 34556677889999999999999999999999999999999999999999999886544332
Q ss_pred ecCCCCCCChHHHHHHHHHHHHH
Q 004425 717 VASGKDHPESEEIYSKLDLLNDE 739 (754)
Q Consensus 717 ~~~~~~~~~~~~~~~~l~~l~~~ 739 (754)
..|.+..|...+.++.++
T Consensus 247 -----~~~~a~~ir~~l~~l~~~ 264 (269)
T COG2912 247 -----DDPIAEMIRAQLLELRQE 264 (269)
T ss_pred -----CchHHHHHHHHHHHHHHH
Confidence 245666677777776633
No 361
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.24 E-value=39 Score=26.71 Aligned_cols=78 Identities=15% Similarity=0.059 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHC
Q 004425 175 RIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSS 254 (754)
Q Consensus 175 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 254 (754)
-++|..+-+.+...|-. ...+--.-+..+...|++++|..+.+.+..||...|-++-.. +.|-.+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 34444444444443321 233333334566778889999888888888888888777543 556666666666666665
Q ss_pred C
Q 004425 255 D 255 (754)
Q Consensus 255 g 255 (754)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 4
No 362
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=73.18 E-value=32 Score=26.83 Aligned_cols=64 Identities=8% Similarity=-0.007 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC--CcchHHHHHHHHHhcCC-chHHHHHHHHHh
Q 004425 631 ESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK--DAGSFILVSNMYAGQGM-LDEAAKVRTTMN 694 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~ 694 (754)
.|......+...+...|+++.|...+-.++..+|+ +...-..|..++...|. .+-+.+.+++|-
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 36777888888999999999999999999998876 46677888888888887 456666666653
No 363
>PRK10941 hypothetical protein; Provisional
Probab=71.96 E-value=23 Score=34.39 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=52.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHH
Q 004425 606 CMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
.+-..|.+.++++.|+...+.+ ...| |+.-|+--+-.+.+.|....|..-++..++..|+++.+-...
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4566677788888888887765 3445 577788888888889999999999999999999887665444
No 364
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.91 E-value=20 Score=33.48 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCChHH-------HHHHHHHhhccCC--C----CcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 633 PLLWRTLVSVSKLMANSKF-------SILASKRLLDLEP--K----DAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~-------a~~~~~~~~~~~p--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
...+.-+.+.|+..|+.+. |...|+++++.+. . .......+|.++.+.|++++|.+.+.++-..
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3344555666777776444 4455555555432 2 2357788999999999999999999987553
No 365
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.55 E-value=38 Score=26.78 Aligned_cols=53 Identities=19% Similarity=0.227 Sum_probs=38.7
Q ss_pred HHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcC
Q 004425 302 VTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLG 356 (754)
Q Consensus 302 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 356 (754)
+..+...|++++|..+.+.+.-||...|-++-.. +.|..+++..-+.+|..+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 3446678899999999888888888888877653 5566666666666666654
No 366
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=71.49 E-value=1.9e+02 Score=32.99 Aligned_cols=184 Identities=15% Similarity=0.047 Sum_probs=91.7
Q ss_pred cCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHH-----HHHHHhc
Q 004425 442 ADDEEDVMVLFSQQRLA----GMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNAL-----ITMYAKC 512 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----i~~~~~~ 512 (754)
.|++++|.++.+..... -..+....+..+..+..-.|++++|..+.+...+..-.-++..+..+ ...+...
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~q 550 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQ 550 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHh
Confidence 67778887777666543 12333455566666777778888888877777665333333333222 2234555
Q ss_pred CCH--HHHHHHHhccC-----CCC-----hhHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHh
Q 004425 513 GSI--DGAFQIFKGIS-----DRD-----IVSWNAMLSAYALH-GLGKGALLLFEEMKREGFAPDDIS--ILGVLQACIY 577 (754)
Q Consensus 513 g~~--~~A~~~~~~~~-----~~~-----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~ 577 (754)
|+. ++....|.... +.. ...+..+..++.+. +...++..-++-.......|-... +..|......
T Consensus 551 Gq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~ 630 (894)
T COG2909 551 GQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFL 630 (894)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHh
Confidence 632 23333333321 111 12333344444431 111222222222222222222222 2255666777
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCcc-HHH---HHHHH--HhhcCCHHHHHHHHHh
Q 004425 578 SGLSEGGICLFNEIEQIYGLRPILE-HFA---CMVDL--LGRAGRLSEAMNLINS 626 (754)
Q Consensus 578 ~g~~~~a~~~~~~~~~~~~~~p~~~-~~~---~l~~~--~~~~g~~~~A~~~~~~ 626 (754)
.|++++|...++++.. ....++.. -|. +.+.+ ....|+.++|.....+
T Consensus 631 ~Gdl~~A~~~l~~~~~-l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 631 RGDLDKALAQLDELER-LLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred cCCHHHHHHHHHHHHH-HhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 8899998888888876 33333211 111 23332 2457888888777665
No 367
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.46 E-value=33 Score=29.53 Aligned_cols=77 Identities=10% Similarity=0.155 Sum_probs=42.8
Q ss_pred hHHHHHHHHccCChhHHHHHhccCC---------CCChhhHHHHHHHHhcCCC-hhHHHHHHHHHHhCCCCCChhhHHHH
Q 004425 96 ANNLINLYAKFNRLDVAQKLFDGML---------VRSAITWTSLIKGYLDDGD-YESVLGIACDMYRSEEKFNEHTCSVI 165 (754)
Q Consensus 96 ~~~li~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~t~~~l 165 (754)
.|+++.-....+++.....+++.+. ..+-.+|++++.+.+...- --.+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4556655555556555555555541 1244456666666655444 33455566666665566666666666
Q ss_pred HHHhccC
Q 004425 166 LEACSLL 172 (754)
Q Consensus 166 l~~~~~~ 172 (754)
+++|.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6665443
No 368
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=71.44 E-value=6.7 Score=22.40 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=24.3
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 668 GSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
..|..++.+|...|++++|...++....
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4688999999999999999999987643
No 369
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=71.30 E-value=15 Score=35.41 Aligned_cols=63 Identities=13% Similarity=0.236 Sum_probs=46.0
Q ss_pred hhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHH
Q 004425 612 GRAGRLSEAMNLINS-SPFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVS 674 (754)
Q Consensus 612 ~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 674 (754)
.+.|+.++|..+|+. +...| ++.+..-+....-.++++-+|.+.|-+++.+.|.|..+..+..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 367888888888873 34555 3556656666666778888899999999999998877766544
No 370
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=71.29 E-value=12 Score=23.14 Aligned_cols=31 Identities=13% Similarity=-0.147 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCChHHHHHH--HHHhhccCCC
Q 004425 635 LWRTLVSVSKLMANSKFSILA--SKRLLDLEPK 665 (754)
Q Consensus 635 ~~~~l~~~~~~~g~~~~a~~~--~~~~~~~~p~ 665 (754)
.|-++...+...|+.++|+.. ++-+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 345556666666666666666 3355555554
No 371
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=70.84 E-value=1.8e+02 Score=32.39 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=19.5
Q ss_pred HHHhcCCChhHHHHHHHHHH-hCCCCCChhhHHHHHHHh
Q 004425 132 KGYLDDGDYESVLGIACDMY-RSEEKFNEHTCSVILEAC 169 (754)
Q Consensus 132 ~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~t~~~ll~~~ 169 (754)
..|---|.+++|++.--... ...+.++...+.+++.-|
T Consensus 67 KVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~ 105 (929)
T KOG2062|consen 67 KVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKC 105 (929)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHH
Confidence 34555666666665433332 233555555555555444
No 372
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.54 E-value=91 Score=33.59 Aligned_cols=46 Identities=24% Similarity=0.185 Sum_probs=23.0
Q ss_pred HhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004425 510 AKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMK 557 (754)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 557 (754)
.+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|.+..
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 3445555555544332 233445555555555555555555555443
No 373
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.39 E-value=1e+02 Score=29.42 Aligned_cols=208 Identities=14% Similarity=0.149 Sum_probs=111.7
Q ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHH---cCC--CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHh-----CCCCchhH
Q 004425 432 AILSGFMEKIADDEEDVMVLFSQQRL---AGM--EPDPVTFSRLLSLSASQACLVRGRSLHAYSIKT-----GYAADVIV 501 (754)
Q Consensus 432 ~li~~~~~~~~~~~~~A~~~~~~m~~---~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 501 (754)
.+|..+.+ .+++++.++.|.+|.. ..+ .-+..+.++++.-.+...+.+....+++.-.+. +-..=..+
T Consensus 70 QmiKI~f~--l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 70 QMIKINFR--LGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 34555555 6666666666666543 111 223356666666666555655555555443321 11111222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC------------CC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 004425 502 GNALITMYAKCGSIDGAFQIFKGISD------------RD---IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI 566 (754)
Q Consensus 502 ~~~li~~~~~~g~~~~A~~~~~~~~~------------~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 566 (754)
-+-|...|...|.+..-..++.++.+ +. ...|..=|..|...++-.+-..+|++.+.-.-.....
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 34466677777777777777776631 11 1356667788888888888888888877522221222
Q ss_pred HHHHHHHHHH-----hcCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHhhcCCHHHHHHHHHh---CCCCCC-
Q 004425 567 SILGVLQACI-----YSGLSEGGICLFNEIEQIYGLRPILE-----HFACMVDLLGRAGRLSEAMNLINS---SPFSES- 632 (754)
Q Consensus 567 t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~---~~~~p~- 632 (754)
....+++-|. +.|.+++|..-|-++-+.+.-.-+.. -|-.|+.++.+.|-- -|+. -|.+.|
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdP 302 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDP 302 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCH
Confidence 3345566554 56788877654444433243322222 255666666666521 1111 133334
Q ss_pred -HHHHHHHHHHHHhc
Q 004425 633 -PLLWRTLVSVSKLM 646 (754)
Q Consensus 633 -~~~~~~l~~~~~~~ 646 (754)
......|+.+|...
T Consensus 303 EIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 303 EILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHHHHHHHhcc
Confidence 45556777777554
No 374
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=69.90 E-value=31 Score=31.50 Aligned_cols=73 Identities=16% Similarity=0.068 Sum_probs=46.2
Q ss_pred hHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHH---hCCCcchhHHHHHHHHHHhCCCHHHHH
Q 004425 343 GKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIK---HGYLSDVRLGTALVDIYAKGGDLKSAR 416 (754)
Q Consensus 343 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~g~~~~~~~~~~li~~~~~~g~~~~A~ 416 (754)
+.|...|-++...+..-++.....+.. |....+.+++..++-...+ .+-.+|+.++.+|+..|.+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556666666666554444333333333 3335667777777776666 233677888888888888888887764
No 375
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=69.07 E-value=35 Score=33.41 Aligned_cols=164 Identities=13% Similarity=0.136 Sum_probs=86.7
Q ss_pred hcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--ChhHH--HHHHHHHHHcCChHHHH
Q 004425 475 ASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR--DIVSW--NAMLSAYALHGLGKGAL 550 (754)
Q Consensus 475 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~--~~li~~~~~~g~~~~A~ 550 (754)
....-+.+|+.+++.+.+.| ..+|+ +..+...--...+.+.++ ++.+| ..|..+-.+.|+..+|.
T Consensus 227 EEa~Ti~~AE~l~k~ALka~----e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~ 295 (556)
T KOG3807|consen 227 EEATTIVDAERLFKQALKAG----ETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAV 295 (556)
T ss_pred hhhhhHHHHHHHHHHHHHHH----HHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHH
Confidence 34455777888888887765 12222 111111111122333333 33344 24555667789999999
Q ss_pred HHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004425 551 LLFEEMKREGFAPDDI---SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 551 ~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (754)
+.++.+.+. .|-.. ....++.+|....-+.+...++-+.-+ ...+.+. --|.-.++. ++..+-++
T Consensus 296 K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd-islPkSA--~icYTaALL------K~RAVa~k- 363 (556)
T KOG3807|consen 296 KIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD-ISLPKSA--AICYTAALL------KTRAVSEK- 363 (556)
T ss_pred HHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccCcchH--HHHHHHHHH------HHHHHHhh-
Confidence 999888763 23222 334577788877777666666655433 2222221 112222222 23333333
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc
Q 004425 628 PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG 668 (754)
Q Consensus 628 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 668 (754)
+.||...-+.|-.+- -.|.++..++.+.+|.-+.
T Consensus 364 -Fspd~asrRGLS~AE------~~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 364 -FSPETASRRGLSTAE------INAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred -cCchhhhhccccHHH------HHHHHHHHHHhhcCCCCcH
Confidence 246665544443332 2467778888888887554
No 376
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.58 E-value=97 Score=32.64 Aligned_cols=118 Identities=14% Similarity=0.047 Sum_probs=56.3
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHCCCCCCcc---hHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhH--HHHHHHHH
Q 004425 231 MILEYNKAGESEMAFHVFVHLLSSDFEPNDY---TFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISV--GNAIVTMY 305 (754)
Q Consensus 231 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~ 305 (754)
.+...+..|+.+.+..+++ .|...+.. .-.+.+...+..|+. ++.+.+.+.|..++... ..+.+...
T Consensus 71 ~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A 142 (413)
T PHA02875 71 ELHDAVEEGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLA 142 (413)
T ss_pred HHHHHHHCCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHH
Confidence 3445567777766555443 33221111 112333344455554 45555566676654321 22345556
Q ss_pred HhcCChHHHHHHHHccCC---CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccCh
Q 004425 306 GKHGMSEEAERMFDAISE---RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDS 361 (754)
Q Consensus 306 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 361 (754)
+..|+.+-+.-+++.-.. +|..-++.+..+ +..|+. ++++.+.+.|..|+.
T Consensus 143 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A-~~~g~~----eiv~~Ll~~ga~~n~ 196 (413)
T PHA02875 143 VMMGDIKGIELLIDHKACLDIEDCCGCTPLIIA-MAKGDI----AICKMLLDSGANIDY 196 (413)
T ss_pred HHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHhCCCCCCc
Confidence 677777776666654433 222233333332 334443 334445556665554
No 377
>PRK12798 chemotaxis protein; Reviewed
Probab=68.41 E-value=1.5e+02 Score=30.61 Aligned_cols=179 Identities=16% Similarity=0.215 Sum_probs=115.5
Q ss_pred cCCHHHHHHHHhccCC----CChhHHHHHHHH-HHHcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHH
Q 004425 512 CGSIDGAFQIFKGISD----RDIVSWNAMLSA-YALHGLGKGALLLFEEMKREGFAPDDI----SILGVLQACIYSGLSE 582 (754)
Q Consensus 512 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 582 (754)
.|+..+|.+.+..+.. +....+-.|+.+ .....+..+|+++|++..- .-|-.. ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5889999999988854 344556666655 4455779999999998876 445432 4445555678889999
Q ss_pred HHHHHHHHHHHHhCCCCCccHHH-HHHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004425 583 GGICLFNEIEQIYGLRPILEHFA-CMVDLLGRAG---RLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKR 658 (754)
Q Consensus 583 ~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 658 (754)
++..+-......|.-.|=...|. ..+..+.+.+ ..+.-.+++..|.-.--..+|..+.+.-...|+.+.|.-+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98877777666555555433322 3333443333 3444455566664333466788888888899999999999999
Q ss_pred hhccCCCCcchHHHHHHHHHhc-----CCchHHHHHHHHH
Q 004425 659 LLDLEPKDAGSFILVSNMYAGQ-----GMLDEAAKVRTTM 693 (754)
Q Consensus 659 ~~~~~p~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m 693 (754)
+..+... ...-...+.+|... .+.+++.+.++.+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9998744 33334444444432 3455555554443
No 378
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=68.00 E-value=55 Score=30.70 Aligned_cols=117 Identities=8% Similarity=-0.092 Sum_probs=71.9
Q ss_pred HHhcCCHHHHHHHHhccC--CCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 004425 509 YAKCGSIDGAFQIFKGIS--DRDI-VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGG 584 (754)
Q Consensus 509 ~~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a 584 (754)
|....+++.|...|.+.. .|++ .-|+.-+.++.+..+++.+.+--.+.++ +.||.+ ....+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 555567788888776653 4666 3466677888888888888888777777 778876 444455566677788888
Q ss_pred HHHHHHHHHH---hCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004425 585 ICLFNEIEQI---YGLRPILEHFACMVDLLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 585 ~~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (754)
+..+.+...- ..+.+.......|-++=...=...++.++.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8887776431 123333344444443333333333344444443
No 379
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.94 E-value=1.1e+02 Score=35.38 Aligned_cols=130 Identities=17% Similarity=0.187 Sum_probs=67.3
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCC--CcHHHHHHHHHH
Q 004425 126 TWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFE--NNVFVGTSLISM 203 (754)
Q Consensus 126 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~ 203 (754)
-|..|+--|...|+.++|+++|.+.....-.-|. ...+.-..+.+.+.+.|-+ +-...|...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~-------------~~~~~~e~ii~YL~~l~~~~~~Li~~y~~w--- 569 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDS-------------FQLDGLEKIIEYLKKLGAENLDLILEYADW--- 569 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccccccc-------------chhhhHHHHHHHHHHhcccchhHHHHHhhh---
Confidence 4778888899999999999999888653100000 0111112233333444322 111222211
Q ss_pred hHhcCCHhHHHHHhccCCCCCcchHH-HHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc
Q 004425 204 YFHSGCFREAENVFRGLAYKDVRCVN-FMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYE 272 (754)
Q Consensus 204 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 272 (754)
.-..+.+...++|-.-......+.+ .-+-.|+.....+-++.+++.+....-.++..-.+.++..|+.
T Consensus 570 -vl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 570 -VLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred -hhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1234455556666541111111111 1233456667777788888887766555566666666666653
No 380
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.39 E-value=11 Score=24.70 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 671 ILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 671 ~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
..|+.+|...|+.+.|.+++++..+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4688899999999999999988764
No 381
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.35 E-value=11 Score=28.27 Aligned_cols=45 Identities=9% Similarity=0.058 Sum_probs=33.4
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHH---HHHHHHHhcCCchHHHHH
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFI---LVSNMYAGQGMLDEAAKV 689 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~ 689 (754)
...+.+.|+..++++++..++.+.-+. .|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888888887777555444 455668888998888876
No 382
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=66.75 E-value=1.4e+02 Score=29.56 Aligned_cols=77 Identities=12% Similarity=-0.009 Sum_probs=42.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcC-------------
Q 004425 619 EAMNLINSSPFSESPLLWRTLVSVSKL----MANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQG------------- 681 (754)
Q Consensus 619 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 681 (754)
.|...+.++...-++.....|...+.. ..|.++|...++++-+... ......++ ++...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 455555544222233333334433321 2377777777777777666 44555566 555555
Q ss_pred --CchHHHHHHHHHhhCCC
Q 004425 682 --MLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 682 --~~~~a~~~~~~m~~~~~ 698 (754)
+...|...+......+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 66666777766655544
No 383
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.21 E-value=67 Score=34.50 Aligned_cols=99 Identities=22% Similarity=0.154 Sum_probs=47.8
Q ss_pred hcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHH
Q 004425 307 KHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGF 386 (754)
Q Consensus 307 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 386 (754)
+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|....+ |..|+-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 344444444443322 2334455555555555555555555554332 33444444555555544444444
Q ss_pred HHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcC
Q 004425 387 AIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGF 422 (754)
Q Consensus 387 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 422 (754)
..+.|.. + .-.-+|...|+++++.+++.+-
T Consensus 718 ~~~~g~~-N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKKQGKN-N-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHhhccc-c-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 4444421 1 1222345567777776666544
No 384
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.68 E-value=50 Score=28.46 Aligned_cols=82 Identities=11% Similarity=0.116 Sum_probs=65.4
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhCCC-----CCChhhHHHHHHHhccCCC-hHHHHHHHHHHHHHCCCCcHHHHHH
Q 004425 126 TWTSLIKGYLDDGDYESVLGIACDMYRSEE-----KFNEHTCSVILEACSLLED-RIFGEQIHAFAIKSGFENNVFVGTS 199 (754)
Q Consensus 126 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~ 199 (754)
..|+++.-.+..+++...+.+++.+..-.. ..+...|.+++++.+.... .-.+..+|..|.+.+.+.++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 468888888888999998888888843211 2466789999999977766 5678899999999889999999999
Q ss_pred HHHHhHhc
Q 004425 200 LISMYFHS 207 (754)
Q Consensus 200 li~~~~~~ 207 (754)
+|.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 99887654
No 385
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=65.48 E-value=10 Score=22.13 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHhhccCCCCcchHHHHHHH
Q 004425 647 ANSKFSILASKRLLDLEPKDAGSFILVSNM 676 (754)
Q Consensus 647 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 676 (754)
|+.+.+..++++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467788888888888888877777766543
No 386
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=64.74 E-value=19 Score=34.81 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=61.3
Q ss_pred HHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEecCCCC
Q 004425 643 SKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKD 722 (754)
Q Consensus 643 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 722 (754)
.++.|+.++|..+++.++++.|.++.....++.......+.-+|...|-+. +.-.|+.|-. .+..++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A----LtisP~nseA--------LvnR~RT 193 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA----LTISPGNSEA--------LVNRART 193 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee----eeeCCCchHH--------Hhhhhcc
Confidence 357799999999999999999999999999999988888888888888643 3344554322 2333455
Q ss_pred CCChHHHHH-HHHHHHHHHHH
Q 004425 723 HPESEEIYS-KLDLLNDEMKL 742 (754)
Q Consensus 723 ~~~~~~~~~-~l~~l~~~~~~ 742 (754)
-|-..+|-. .|+.+..+-++
T Consensus 194 ~plV~~iD~r~l~svdskrd~ 214 (472)
T KOG3824|consen 194 TPLVSAIDRRMLRSVDSKRDE 214 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 555555543 34444444333
No 387
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.49 E-value=20 Score=26.84 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHH
Q 004425 603 HFACMVDLLGRAGRLSEAMNL 623 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~ 623 (754)
++.+++.+|+..|++++++++
T Consensus 45 ~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 45 VLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444
No 388
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.03 E-value=22 Score=27.98 Aligned_cols=52 Identities=13% Similarity=0.096 Sum_probs=37.0
Q ss_pred HhcCChHHHHHHHHHhhccCCCC---------cchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 644 KLMANSKFSILASKRLLDLEPKD---------AGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 644 ~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.+.||+..|...+.+.++..... ..+...++.++...|++++|...+++...
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35677777777777776643321 23456678889999999999999988754
No 389
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=61.85 E-value=31 Score=29.59 Aligned_cols=66 Identities=11% Similarity=0.050 Sum_probs=47.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchH
Q 004425 617 LSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDE 685 (754)
Q Consensus 617 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 685 (754)
.+.|.++++-|+ ...............|++.-|..+.+.++..+|+|..+-...+++|...|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 466777777774 233344455566678999999999999999999999999999998887765443
No 390
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=61.83 E-value=1.6e+02 Score=28.71 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=34.5
Q ss_pred CCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC-----CCChhhHHHHHHHHhhhhcCCHHHHHHHHH
Q 004425 392 YLSDVRLGTALVDIYAKGGDLKSARMLLDGFS-----CKYTAEFNAILSGFMEKIADDEEDVMVLFS 453 (754)
Q Consensus 392 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~~~A~~~~~ 453 (754)
-.++..+...+++.+++.+++..-.++++... ..|...|..+|..... .|+..-...+..
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~--sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVE--SGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHH--cCCHHHHHHHhh
Confidence 34555555566666666666666666655432 3355566666666666 666655544433
No 391
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.28 E-value=94 Score=33.29 Aligned_cols=130 Identities=16% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCC------------ccHHHHHHHHHhhcCCHHHHHHHHHhC----------CCCCC
Q 004425 575 CIYSGLSEGGICLFNEIEQIYGLRPI------------LEHFACMVDLLGRAGRLSEAMNLINSS----------PFSES 632 (754)
Q Consensus 575 ~~~~g~~~~a~~~~~~~~~~~~~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~p~ 632 (754)
+.+...++++...|..... -..|+ +.+.-.|.+.+..+|+.+-|.+++++. .+.|.
T Consensus 248 ~~hs~sYeqaq~~F~~av~--~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~ 325 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVI--VHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPF 325 (665)
T ss_pred eecchHHHHHHHHHHHHHh--hcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccc
Q ss_pred HH----------------HHHHHHHHHHhcCChHHHHHHHHHhhccCCC-CcchHHHHHHHHH-hcCCchHHHHHHHHH-
Q 004425 633 PL----------------LWRTLVSVSKLMANSKFSILASKRLLDLEPK-DAGSFILVSNMYA-GQGMLDEAAKVRTTM- 693 (754)
Q Consensus 633 ~~----------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m- 693 (754)
.. +.-..+....+.|-+.-|.+..+-++.++|. ||-....+++.|+ +..+|.=-+++++..
T Consensus 326 sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 326 SGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred cccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred hhCCCccCCceeE
Q 004425 694 NDLRLSKEAGCSW 706 (754)
Q Consensus 694 ~~~~~~~~~~~s~ 706 (754)
....+...|..++
T Consensus 406 ~~n~l~~~PN~~y 418 (665)
T KOG2422|consen 406 NMNKLSQLPNFGY 418 (665)
T ss_pred hhccHhhcCCchH
No 392
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=61.04 E-value=1.4e+02 Score=31.92 Aligned_cols=127 Identities=17% Similarity=0.115 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCC--h---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004425 503 NALITMYAKCGSIDGAFQIFKGISDRD--I---VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIY 577 (754)
Q Consensus 503 ~~li~~~~~~g~~~~A~~~~~~~~~~~--~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 577 (754)
..|+.-|.+.+++++|..++..|.-.. . .+.+.+.+.+.+..-..+....++.++-.=..|....-......|..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 356778999999999999999996422 2 23444455555555455555566665543333322211111111111
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004425 578 SGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSI 653 (754)
Q Consensus 578 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 653 (754)
-=.+-|.++| .-+.|.+++++|..+--.++ +...+.-+-..-...|+.+.|.
T Consensus 492 -~V~~~aRRfF--------------------hhLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 492 -PVSDLARRFF--------------------HHLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAE 543 (545)
T ss_pred -HHHHHHHHHH--------------------HHHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhh
Confidence 0011233333 33446678888877776664 3333334444444556666554
No 393
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=60.52 E-value=13 Score=34.31 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=43.3
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 610 LLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
++.+.|+.+.|.+++++. ...| ....|.-+...--+.|+.+.|.+.+++.++++|+|.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345667777777777655 3344 577788888877888888889999999888888754
No 394
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=60.30 E-value=80 Score=30.11 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhhc-----cCCCCcchHHHHHH----HHHhcCCchHHHHHHHHHhhCCC
Q 004425 649 SKFSILASKRLLD-----LEPKDAGSFILVSN----MYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 649 ~~~a~~~~~~~~~-----~~p~~~~~~~~l~~----~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
.+.|..+|+++++ +.|.+|.......+ .|--.|+.++|.++-+..-+..+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 3667777777765 56777654333322 35668999999998887654433
No 395
>PRK13342 recombination factor protein RarA; Reviewed
Probab=59.95 E-value=2.3e+02 Score=29.84 Aligned_cols=102 Identities=20% Similarity=0.060 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCChhHHHHHH
Q 004425 461 EPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGI---SDRDIVSWNAML 537 (754)
Q Consensus 461 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li 537 (754)
..+......++..+ .|+...+..+++.+...+-..+.. ...+++... ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~----------------~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITLE----------------LLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHH----------------HHHHHHhhhhhccCCCccHHHHHH
Confidence 44444555554443 678888887777765542111211 112222211 112223344455
Q ss_pred HHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004425 538 SAYAL---HGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGL 580 (754)
Q Consensus 538 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 580 (754)
+++.+ .++.+.|+..+.+|++.|..|....-..+..++..-|.
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~ 280 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGL 280 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcc
Confidence 55554 47899999999999999988887766666666555543
No 396
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.73 E-value=91 Score=25.11 Aligned_cols=79 Identities=18% Similarity=0.085 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHH
Q 004425 174 DRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLS 253 (754)
Q Consensus 174 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 253 (754)
..++|..+.+.+...|- -...+.-.-+..+.+.|++++|...=.....||...|-++-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45666666666666653 333444444566778888888866666666778877766644 466777777777777765
Q ss_pred CC
Q 004425 254 SD 255 (754)
Q Consensus 254 ~g 255 (754)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 397
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=58.97 E-value=16 Score=33.72 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=49.8
Q ss_pred HhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 644 KLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 644 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
...++.+.+.+++.+++++-|+....|..++..-.+.|+.+.|.+.+++..+...
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 4668999999999999999999999999999999999999999999998766443
No 398
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.73 E-value=1.8e+02 Score=28.19 Aligned_cols=52 Identities=10% Similarity=0.023 Sum_probs=35.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHH
Q 004425 537 LSAYALHGLGKGALLLFEEMKREGFAPDDI-------SILGVLQACIYSGLSEGGICLF 588 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~~~~g~~~~a~~~~ 588 (754)
.+-..+.+++++|+..+.+.+..|+..|.. |...+...|...|++..-.+..
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 344556788899999999998888776654 4455666777777765544443
No 399
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.43 E-value=24 Score=23.08 Aligned_cols=24 Identities=38% Similarity=0.373 Sum_probs=15.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 004425 536 MLSAYALHGLGKGALLLFEEMKRE 559 (754)
Q Consensus 536 li~~~~~~g~~~~A~~~~~~m~~~ 559 (754)
+..+|...|+.+.|.+++++.+..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666667777777777666653
No 400
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=58.07 E-value=2.3e+02 Score=29.19 Aligned_cols=54 Identities=11% Similarity=-0.108 Sum_probs=34.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHH--hcCCHHHHHHHHHH
Q 004425 537 LSAYALHGLGKGALLLFEEMKREGFAPDDISILGV----LQACI--YSGLSEGGICLFNE 590 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l----l~a~~--~~g~~~~a~~~~~~ 590 (754)
+..+...+++..|.++|+++.+..+.|+...+... ..+|. ..-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34556778999999999999987666655443222 22322 33455666666653
No 401
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=57.37 E-value=1.2e+02 Score=25.74 Aligned_cols=72 Identities=13% Similarity=0.001 Sum_probs=43.7
Q ss_pred CCCccHHHHHHHHHhhcCCHH---HHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcch
Q 004425 598 RPILEHFACMVDLLGRAGRLS---EAMNLINSSP--FSE--SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGS 669 (754)
Q Consensus 598 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~--~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 669 (754)
.++..+--.+..++.+..+.+ +.+.+++++- ..| +-....-|.-++.+.++++++.+..+.+++.+|+|..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 344444445555555544433 3334444331 223 23334446667788899999999999999999996554
No 402
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=56.52 E-value=2.2e+02 Score=28.45 Aligned_cols=129 Identities=14% Similarity=0.110 Sum_probs=82.7
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHHhCCCCCc
Q 004425 528 RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIY------SGLSEGGICLFNEIEQIYGLRPIL 601 (754)
Q Consensus 528 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~------~g~~~~a~~~~~~~~~~~~~~p~~ 601 (754)
.|...|+- +-.++++.++++...++. |-....-..|.+|-. .-+|.....+|+.+.. +.|+.
T Consensus 262 QDr~lW~r--------~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSP 329 (415)
T COG4941 262 QDRSLWDR--------ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSP 329 (415)
T ss_pred cchhhhhH--------HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCC
Confidence 45566653 234677888888887765 777777777766542 2356777777777744 45554
Q ss_pred c-HHHHHHHHHhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcch
Q 004425 602 E-HFACMVDLLGRAGRLSEAMNLINSSPFSE----SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGS 669 (754)
Q Consensus 602 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 669 (754)
. +.|--+ ++++.--.+.++..++.+...| -...+..-.+.+.+.|+.++|...|++++++.++..+.
T Consensus 330 vV~LNRAV-Ala~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 330 VVTLNRAV-ALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred eEeehHHH-HHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 3 444322 2333333566666666654332 23345555677788899999999999999998885543
No 403
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.77 E-value=1e+02 Score=25.01 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKR 558 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 558 (754)
-|..|+.-|...|.+++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377788888888888888888888776
No 404
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=55.50 E-value=2.1e+02 Score=27.99 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=40.3
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-----CCChhHHHHHHHHHHHcCChHHHHHHH
Q 004425 495 YAADVIVGNALITMYAKCGSIDGAFQIFKGIS-----DRDIVSWNAMLSAYALHGLGKGALLLF 553 (754)
Q Consensus 495 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~ 553 (754)
-.++..+...+++.+++.+++..-.++++... ..|...|..+|......|+..-...+.
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 35666666777777777777777777777553 246677888888888888765444433
No 405
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=54.60 E-value=1.8e+02 Score=27.03 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC----ccHHHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI----LEHFAC 606 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 606 (754)
|.+..++.+.+.+...+++...++-++ -+|.. -+-..++..++-.|+|++|..-++-... +.|+ ...|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHH
Confidence 344556777788889999988888777 45644 4667788888999999999887776643 3333 344555
Q ss_pred HHHHHhhcCCHHHHH-HHHHhC--CCCC--CHHHHH-HHHHHHHhc--CChHHHHHHHHHhhccCCCCc
Q 004425 607 MVDLLGRAGRLSEAM-NLINSS--PFSE--SPLLWR-TLVSVSKLM--ANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 607 l~~~~~~~g~~~~A~-~~~~~~--~~~p--~~~~~~-~l~~~~~~~--g~~~~a~~~~~~~~~~~p~~~ 667 (754)
++.+ +.+. ++|..- |.-+ ....|- .|..+...+ |..+....+-+++++..|...
T Consensus 78 lir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 78 LIRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 5443 3333 234321 2111 344554 444444443 456667777788888777643
No 406
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.35 E-value=1.8e+02 Score=28.27 Aligned_cols=88 Identities=16% Similarity=0.096 Sum_probs=52.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHh--
Q 004425 537 LSAYALHGLGKGALLLFEEMKR--EGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLG-- 612 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-- 612 (754)
|.+++..+++.+++...-+--+ ..++|...-.. |-.|++.|....+.++-..-..+ .-.-+...|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 5777777888777654433322 12444443333 33467777777777776666553 22222334776666654
Q ss_pred ---hcCCHHHHHHHHHhC
Q 004425 613 ---RAGRLSEAMNLINSS 627 (754)
Q Consensus 613 ---~~g~~~~A~~~~~~~ 627 (754)
-.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 479999999988543
No 407
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.61 E-value=2.2e+02 Score=29.20 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc---------CCCCC
Q 004425 500 IVGNALITMYAKCGSIDGAFQIFKGISD------RDIVSWNAMLSAYALHGLGKGALLLFEEMKRE---------GFAPD 564 (754)
Q Consensus 500 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~ 564 (754)
..+.-+.+.|..||+++.|++.|.+.+. .-+..|-.+|..-.-.|+|.....+..+..+. .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4456788889999999999999988653 12234555666556668887777776666542 12222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004425 565 DISILGVLQACIYSGLSEGGICLFNEI 591 (754)
Q Consensus 565 ~~t~~~ll~a~~~~g~~~~a~~~~~~~ 591 (754)
...+..+...+. +++..|.+.|-..
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhC
Confidence 233444433333 3666666666443
No 408
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=52.04 E-value=4.2e+02 Score=30.44 Aligned_cols=189 Identities=12% Similarity=0.020 Sum_probs=82.9
Q ss_pred HhcCChhHHHHHHHHhHhc----CcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHH-----HHHHH
Q 004425 337 VRSGHGGKAINGFLEFLDL----GICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTAL-----VDIYA 407 (754)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-----i~~~~ 407 (754)
...|++++|.++.+..... -..+....+..+..+..-.|+++.|..+.....+..-.-+...+..+ ...+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3456666666666655432 12233444555555666667777777666665553222233222222 12234
Q ss_pred hCCCH--HHHHHHHhcCC-----CCCh-----hhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHH
Q 004425 408 KGGDL--KSARMLLDGFS-----CKYT-----AEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTF--SRLLSL 473 (754)
Q Consensus 408 ~~g~~--~~A~~~~~~~~-----~~~~-----~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~--~~ll~~ 473 (754)
..|+. ++....|..+. .... .....+..++.+ ..+...++..-+.-.......|-...+ ..+...
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r-~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l 627 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR-LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAEL 627 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH-HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHH
Confidence 45522 22222232221 1111 122223333333 122222332222222222222222222 255566
Q ss_pred HhcccchHHHHHHHHHHHHhCCCCc----hhHHHHH--HHHHHhcCCHHHHHHHHhccC
Q 004425 474 SASQACLVRGRSLHAYSIKTGYAAD----VIVGNAL--ITMYAKCGSIDGAFQIFKGIS 526 (754)
Q Consensus 474 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l--i~~~~~~g~~~~A~~~~~~~~ 526 (754)
....|+++.|.....++......++ -...... +......|+.+.|.....+-.
T Consensus 628 ~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 628 EFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 6677888888777777765433321 1111111 223345566666666665543
No 409
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.94 E-value=95 Score=25.84 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 004425 549 ALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIY 595 (754)
Q Consensus 549 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 595 (754)
..+-++.+...++.|+.......|+||.+.+++..|..+|+-++.+.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 34445566667789999999999999999999999999999988743
No 410
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=50.96 E-value=2.1e+02 Score=26.62 Aligned_cols=63 Identities=8% Similarity=-0.070 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChh-hHHHHHHHHhhhhcCCHHHHHHHHHHHHHc
Q 004425 396 VRLGTALVDIYAKGGDLKSARMLLDGFSCKYTA-EFNAILSGFMEKIADDEEDVMVLFSQQRLA 458 (754)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~~~A~~~~~~m~~~ 458 (754)
..++|-|.--+...|+++.|.+.|+...+-|+. .|..+-.+..---.|++.-|.+-|.+.-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 456676666677777777777777776654433 232222221111156666666666555544
No 411
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=49.82 E-value=2.3e+02 Score=26.78 Aligned_cols=106 Identities=16% Similarity=0.095 Sum_probs=54.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCC-CCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCC
Q 004425 540 YALHGLGKGALLLFEEMKREGFA-PDDI--SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGR 616 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~-p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 616 (754)
+...|+++.|+++.+-+++.|.. |+.+ ++-+++. |+....-..... .|-..++.....+...-...
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va--------eev~~~A~~~~~-ag~~~e~~~~~~~~~l~~~~-- 161 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVA--------EEVANAALKAAS-AGESVEPYFLRVFLDLTTEW-- 161 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHH--------HHHHHHHHHHHH-cCCCCChHHHHHHHHHHhcC--
Confidence 34679999999999999988865 4443 2222221 222222222222 23333332222221111111
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHH---------hcCChHHHHHHHHHhhccCCC
Q 004425 617 LSEAMNLINSSPFSESPLLWRTLVSVSK---------LMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 617 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~p~ 665 (754)
.|+.+.....+......+. ..++...|...++++++++|+
T Consensus 162 ---------dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 162 ---------DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred ---------CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 2222222334445555552 335778899999999999998
No 412
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=49.76 E-value=1.4e+02 Score=24.16 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=43.0
Q ss_pred CchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 004425 275 GVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLD 354 (754)
Q Consensus 275 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (754)
..++|..|.+.+...+. ....+--.-+..+.+.|++++|...=.....||...|-++-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34566666666655543 222222233445667888888854444445578887776654 466777777777776655
Q ss_pred cC
Q 004425 355 LG 356 (754)
Q Consensus 355 ~g 356 (754)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 44
No 413
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=49.01 E-value=3.2e+02 Score=28.14 Aligned_cols=55 Identities=13% Similarity=-0.014 Sum_probs=26.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 004425 537 LSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACI-YSGLSEGGICLFNEI 591 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~~ 591 (754)
|..+.+.|.+..|+++.+-+...+..-|.......|+.|+ +++.++--+++++..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 3445555666666666666665322223333334444333 445555555555443
No 414
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.94 E-value=1.2e+02 Score=25.55 Aligned_cols=42 Identities=14% Similarity=0.006 Sum_probs=31.9
Q ss_pred HHHHHHHHhhc--cCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 004425 651 FSILASKRLLD--LEPKDAGSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 651 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
.+..+|+.+.. +.-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777766 4455677888888889999999999888864
No 415
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.91 E-value=1.2e+02 Score=23.41 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=25.2
Q ss_pred hcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHH
Q 004425 307 KHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKA 345 (754)
Q Consensus 307 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 345 (754)
..|+.+.|.++++.++ +....|..++.++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4566777777777777 6666677777777666654443
No 416
>PRK11619 lytic murein transglycosylase; Provisional
Probab=47.60 E-value=4.6e+02 Score=29.59 Aligned_cols=233 Identities=10% Similarity=-0.074 Sum_probs=111.3
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAG-MEPDPV--TFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGA 518 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 518 (754)
..+.+.|..++....... +.+... ....+.......+....+...+....... .+......-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 456677777776654432 222221 22222222222211334444444333221 2333334444444567777777
Q ss_pred HHHHhccCC--CChhHHH-HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH-HHHH
Q 004425 519 FQIFKGISD--RDIVSWN-AMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLS-EGGICLFN-EIEQ 593 (754)
Q Consensus 519 ~~~~~~~~~--~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~-~~~~ 593 (754)
...+..|.. .+..-|. =+..++...|+.++|...|++... . .+|-.++.+-. .|.. .-...... ....
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa~~-Lg~~~~~~~~~~~~~~~~ 404 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAAQR-LGEEYPLKIDKAPKPDSA 404 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHHHH-cCCCCCCCCCCCCchhhh
Confidence 777777643 1111121 245555556777777777777532 1 12333332211 1111 00000000 0000
Q ss_pred HhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccC---CCCcchH
Q 004425 594 IYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLE---PKDAGSF 670 (754)
Q Consensus 594 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~ 670 (754)
..-. --..-+..+...|+..+|...+..+....+......+...-...|..+.++.+..+....+ -..+..|
T Consensus 405 -~~~~----~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~ 479 (644)
T PRK11619 405 -LTQG----PEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAW 479 (644)
T ss_pred -hccC----hHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcch
Confidence 0000 1123345666788888888888765334555666667777778888888888776543311 1123356
Q ss_pred HHHHHHHHhcCCchHHHH
Q 004425 671 ILVSNMYAGQGMLDEAAK 688 (754)
Q Consensus 671 ~~l~~~~~~~g~~~~a~~ 688 (754)
.....-+.+.-..+.+.-
T Consensus 480 ~~~~~~~a~~~~v~~~lv 497 (644)
T PRK11619 480 NDEFRRYTSGKGIPQSYA 497 (644)
T ss_pred HHHHHHHHHHcCCCHHHH
Confidence 666666666556666553
No 417
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.16 E-value=46 Score=23.72 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 564 DDISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 564 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
|..--..++.++...|++++|.++.+.+..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444556666666666666666666554
No 418
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.04 E-value=1.6e+02 Score=24.01 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=22.6
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHhHH
Q 004425 226 RCVNFMILEYNKAGESEMAFHVFVHLLS 253 (754)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 253 (754)
.-|..++.-|-..|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3578888888888888888888888776
No 419
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.67 E-value=56 Score=21.81 Aligned_cols=31 Identities=13% Similarity=0.079 Sum_probs=14.8
Q ss_pred cCCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 004425 136 DDGDYESVLGIACDMYRSEEKFNEHTCSVIL 166 (754)
Q Consensus 136 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 166 (754)
+.|-..++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444444555555555555544444444443
No 420
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.30 E-value=58 Score=21.74 Aligned_cols=32 Identities=16% Similarity=-0.030 Sum_probs=18.8
Q ss_pred hccCCchHHHHHHHHHHHhcCCCChhHHHHHH
Q 004425 271 YENLGVEEGKQLHGLAVKFGVVREISVGNAIV 302 (754)
Q Consensus 271 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 302 (754)
.+.|-+.++..+++.|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455556666666666666666655555544
No 421
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=46.22 E-value=5.8e+02 Score=30.34 Aligned_cols=257 Identities=10% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCChhhhHHHHHHHHccCChhHHHHHhccCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChh
Q 004425 81 HAFLLKSGSQNDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEH 160 (754)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 160 (754)
...+.+.=-.+++.+-...+..+.+.+..+....+...+..++...-...+.++.+-+........+..+... +|..
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~ 699 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPV 699 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHH
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCC
Q 004425 161 TCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGE 240 (754)
Q Consensus 161 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 240 (754)
.-...+.++...+.-+. ..+...+. .+|..+-...+.++.+.+..+..... ...++...-...+.++...+.
T Consensus 700 VR~~A~~aL~~~~~~~~-~~l~~~L~----D~d~~VR~~Av~aL~~~~~~~~l~~~---l~D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 700 VRAAALDVLRALRAGDA-ALFAAALG----DPDHRVRIEAVRALVSVDDVESVAGA---ATDENREVRIAVAKGLATLGA 771 (897)
T ss_pred HHHHHHHHHHhhccCCH-HHHHHHhc----CCCHHHHHHHHHHHhcccCcHHHHHH---hcCCCHHHHHHHHHHHHHhcc
Q ss_pred hhH-HHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 004425 241 SEM-AFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFD 319 (754)
Q Consensus 241 ~~~-A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 319 (754)
.+. +...+..+.+. +|...-...+.++...|....+...+..+++ .+|..+-...+.++.+.+..+....+..
T Consensus 772 ~~~~~~~~L~~ll~D---~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~~a~~~L~~ 845 (897)
T PRK13800 772 GGAPAGDAVRALTGD---PDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAADVAVPALVE 845 (897)
T ss_pred ccchhHHHHHHHhcC---CCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccccchHHHHHH
Q ss_pred ccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 004425 320 AISERNLISWTALISGYVRSGHGGKAINGFLEFLD 354 (754)
Q Consensus 320 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (754)
.+.+++...--..+.++.+......+...+....+
T Consensus 846 ~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
No 422
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.90 E-value=65 Score=29.55 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Q 004425 630 SESPLLWRTLVSVSKLMANSKFSILASKRLLDLEP 664 (754)
Q Consensus 630 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 664 (754)
.|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45555555555555566666666666666666555
No 423
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.16 E-value=21 Score=39.77 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=73.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHH
Q 004425 543 HGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMN 622 (754)
Q Consensus 543 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 622 (754)
.+++++.+.+.+...--| -++|.-+.+.|-.+-|+.+.+.=... ..+...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 356676666554432211 12344556677777777665543332 223457899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 004425 623 LINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAK 688 (754)
Q Consensus 623 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 688 (754)
...++. |..+|.-|+..-..+||.+-|+-.|++.... ..|+-+|.-.|+.++-.+
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf--------ekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNF--------EKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh--------hheeEEEEEeCCHHHHHH
Confidence 998874 7889999999999999999999999886543 333444555555444333
No 424
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=44.86 E-value=1.3e+02 Score=23.17 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=21.9
Q ss_pred hcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhH
Q 004425 206 HSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEM 243 (754)
Q Consensus 206 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 243 (754)
..|+.+.|.++++.++ +....|..++.++-..|.-+-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHEL 84 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhh
Confidence 3456666666666666 555666666666655554433
No 425
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.63 E-value=5.7e+02 Score=29.81 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHh
Q 004425 328 SWTALISGYVRSGHGGKAINGFLEFLD 354 (754)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (754)
-|..|+.-|...|+.++|+++|.+..+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 477788888888888888888888765
No 426
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=44.62 E-value=2.8e+02 Score=26.21 Aligned_cols=45 Identities=27% Similarity=0.381 Sum_probs=30.8
Q ss_pred HHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 004425 521 IFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI 566 (754)
Q Consensus 521 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 566 (754)
+|+-..+|.+.....|+..+. .+++++|.+.+.++-+.|+.|...
T Consensus 230 VfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 230 VFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 344444566666666666554 467888888888888888887543
No 427
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.35 E-value=68 Score=29.45 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=24.7
Q ss_pred hcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004425 577 YSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 577 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (754)
...+.+......+.+.+.....|+...|..++.++...|+.++|.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333344555555555555555555555555555443
No 428
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=44.01 E-value=3.3e+02 Score=26.96 Aligned_cols=163 Identities=17% Similarity=0.167 Sum_probs=88.5
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 004425 486 LHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGIS-DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD 564 (754)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 564 (754)
+++-+...++-+.......-++.+.+.+..+.+..++...- ..|.. .++.. +-.+.+.-++++.+. +.|
T Consensus 22 LlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~p------~a~~e--kr~~Vla~lkeLe~e-v~p- 91 (432)
T KOG2758|consen 22 LLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMP------NALVE--KRTEVLAELKELEEE-VAP- 91 (432)
T ss_pred HHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccch------HHHHH--HHHHHHHHHHHHHHH-HHH-
Confidence 44444455566666666667777777778888888887762 11111 11110 112222222332221 111
Q ss_pred HHHHHHHH---HHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHH---HhCCCCCCHHHHH
Q 004425 565 DISILGVL---QACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLI---NSSPFSESPLLWR 637 (754)
Q Consensus 565 ~~t~~~ll---~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~p~~~~~~ 637 (754)
...++ ........-.+....++.+.+.+++.|+ +++..-+......||++..|-+++ ......||....+
T Consensus 92 ---iv~~le~Pd~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~ls 168 (432)
T KOG2758|consen 92 ---IVKVLENPDLIAALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLS 168 (432)
T ss_pred ---HHHHHcCHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHH
Confidence 01111 1111111223346778888888999998 467777888889999999988764 4444455553333
Q ss_pred HHHHHHH---hcCChHHHHHHHHHhhc
Q 004425 638 TLVSVSK---LMANSKFSILASKRLLD 661 (754)
Q Consensus 638 ~l~~~~~---~~g~~~~a~~~~~~~~~ 661 (754)
++-+-+. -.-+++.|.+-+.++.+
T Consensus 169 alwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 169 ALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3322222 23578888877766655
No 429
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=43.99 E-value=2.1e+02 Score=27.83 Aligned_cols=87 Identities=11% Similarity=0.056 Sum_probs=44.8
Q ss_pred HHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh----
Q 004425 333 ISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAK---- 408 (754)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~---- 408 (754)
|.+++..++|.+++...-+--+.--+.-....-.-|--|.+.+....+.++-..-....-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5666666777766654433322111111222333344456666666666666655553222233335555555543
Q ss_pred -CCCHHHHHHHH
Q 004425 409 -GGDLKSARMLL 419 (754)
Q Consensus 409 -~g~~~~A~~~~ 419 (754)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 67777777765
No 430
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.85 E-value=3.9e+02 Score=27.62 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHccCC------CCchhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 004425 297 VGNAIVTMYGKHGMSEEAERMFDAISE------RNLISWTALISGYVRSGHGGKAINGFLEFLD 354 (754)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (754)
.+.-+.+.|..+|+++.|.+.+.+..+ .-+..|-.+|..-.-.|+|........+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 455677788889999999999888543 2234555666666677777777766666554
No 431
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=43.85 E-value=3.3e+02 Score=26.83 Aligned_cols=16 Identities=19% Similarity=0.544 Sum_probs=7.2
Q ss_pred hHHHHHHHHhhhhcCCHH
Q 004425 429 EFNAILSGFMEKIADDEE 446 (754)
Q Consensus 429 ~~~~li~~~~~~~~~~~~ 446 (754)
.|..|+.+++. .|+.+
T Consensus 323 ~yaPLL~af~s--~g~sE 338 (412)
T KOG2297|consen 323 QYAPLLAAFCS--QGQSE 338 (412)
T ss_pred hhhHHHHHHhc--CChHH
Confidence 34444444444 44444
No 432
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=43.36 E-value=2.9e+02 Score=26.08 Aligned_cols=55 Identities=7% Similarity=0.210 Sum_probs=33.1
Q ss_pred HHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 004425 417 MLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSA 475 (754)
Q Consensus 417 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 475 (754)
.+|+-..+|.+.....|+..+.. ++.++|.++++++-+.|+.|... .+++.+++-
T Consensus 229 nVfKv~d~PhP~~v~~ml~~~~~---~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K 283 (333)
T KOG0991|consen 229 NVFKVCDEPHPLLVKKMLQACLK---RNIDEALKILAELWKLGYSPEDI-ITTLFRVVK 283 (333)
T ss_pred hhhhccCCCChHHHHHHHHHHHh---ccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHH
Confidence 34444445566666666666554 67778888888877777776553 234444443
No 433
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=42.35 E-value=2e+02 Score=23.85 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCchHHHHHHHHH
Q 004425 671 ILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 671 ~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
...+.++...|+.+||...|+..
T Consensus 104 fsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 104 FSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHH
Confidence 34455678889999999888765
No 434
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=42.19 E-value=3.4e+02 Score=26.46 Aligned_cols=131 Identities=11% Similarity=0.053 Sum_probs=65.2
Q ss_pred HHHHcCChhHHHHHHHHhHHCCCCCCcchH-------HHHHHHHhccCCchHHHHHHHH----HHHhcCCCChhHHHHHH
Q 004425 234 EYNKAGESEMAFHVFVHLLSSDFEPNDYTF-------TNVISVCYENLGVEEGKQLHGL----AVKFGVVREISVGNAIV 302 (754)
Q Consensus 234 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------~~ll~~~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~~li 302 (754)
-.++.+++++|+..|.++...|+..|..+. ..+...+...|+...-.+.... |.+..-+....+..+|+
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLi 91 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLI 91 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 345666777777777777777766664443 3455556666655443333221 22222222333444444
Q ss_pred HHHHh-cCChHHHHHHHHccCC----CC-----chhHHHHHHHHHhcCChhHHHHHHHH----hHhcCcccChhhH
Q 004425 303 TMYGK-HGMSEEAERMFDAISE----RN-----LISWTALISGYVRSGHGGKAINGFLE----FLDLGICCDSSCL 364 (754)
Q Consensus 303 ~~~~~-~g~~~~A~~~~~~~~~----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~~~ 364 (754)
..+.. ...++....+.....+ .+ ...-.-+|..+.+.|.+.+|+.+... +.+..-+|+..+.
T Consensus 92 ekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 92 EKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 44432 2234444444333321 00 11223467777888888888765443 3444444544443
No 435
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=42.15 E-value=2.7e+02 Score=25.35 Aligned_cols=22 Identities=14% Similarity=0.027 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 004425 329 WTALISGYVRSGHGGKAINGFL 350 (754)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~ 350 (754)
-|.-...+.+.|..+.|+.+++
T Consensus 184 vn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 184 VNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHcCCchHHHHHHh
Confidence 3445555666777777776665
No 436
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.09 E-value=3.3e+02 Score=26.41 Aligned_cols=159 Identities=17% Similarity=0.121 Sum_probs=72.9
Q ss_pred hcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHH----HHHhHHCCCCCCcchHHHHHHHHhccCCch-HHH
Q 004425 206 HSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHV----FVHLLSSDFEPNDYTFTNVISVCYENLGVE-EGK 280 (754)
Q Consensus 206 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~ 280 (754)
+++++++|.+++.. -...+.+.|+...|-++ .+-+.+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666665432 12234455554443333 233334455555555555555444433221 233
Q ss_pred HHHHHHHHh---cCC--CChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhc
Q 004425 281 QLHGLAVKF---GVV--REISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDL 355 (754)
Q Consensus 281 ~~~~~~~~~---g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (754)
.+.+.+++. |-. -|+.....+...|.+.|++.+|+..|-.-..++...+..++......|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 444444432 222 36778888888999999999999887555444433333333333333333322
Q ss_pred CcccChhhHHHHHHHhcccCChHHHHHHHHHHHHh
Q 004425 356 GICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKH 390 (754)
Q Consensus 356 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 390 (754)
|...-. .+--|...+++..|...+....+.
T Consensus 141 ----dlfi~R-aVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ----DLFIAR-AVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ----HHHHHH-HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ----hHHHHH-HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 111111 222345566777777766665543
No 437
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=42.08 E-value=56 Score=33.32 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=26.5
Q ss_pred HHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 004425 640 VSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAK 688 (754)
Q Consensus 640 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 688 (754)
.-+|.+.++.+.|+....+.+-++|.+...+..-+-++....||.+|.+
T Consensus 235 v~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 235 VTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred HHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666555554444545555555555543
No 438
>PF13934 ELYS: Nuclear pore complex assembly
Probab=41.72 E-value=3.1e+02 Score=25.94 Aligned_cols=71 Identities=17% Similarity=0.116 Sum_probs=30.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKL 645 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 645 (754)
++.++...|+.+.|..+++.+.- ...+.+....+... ..+|.+.||..+.+..+.+-....|..++..|..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 44444445555555555544311 11111112222222 3445666666655554322123355555555543
No 439
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=41.71 E-value=25 Score=34.17 Aligned_cols=80 Identities=11% Similarity=-0.018 Sum_probs=55.4
Q ss_pred CCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCChHHHHHHHHHhhccCCCCcchHHH
Q 004425 596 GLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRT-LVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 596 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 672 (754)
.+.-|+..|...+.-..+.|.+.+.-.++.+. ...| |...|-. -..-+..++|++.+..++.+.+.++|++|..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 44556666666666556667777777776554 3344 6777754 2334567899999999999999999999987765
Q ss_pred HHH
Q 004425 673 VSN 675 (754)
Q Consensus 673 l~~ 675 (754)
...
T Consensus 182 yfr 184 (435)
T COG5191 182 YFR 184 (435)
T ss_pred HHH
Confidence 543
No 440
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.24 E-value=81 Score=24.75 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhccC
Q 004425 637 RTLVSVSKLMANSKFSILASKRLLDLE 663 (754)
Q Consensus 637 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 663 (754)
..+.......|+.++|...+++++++-
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 344555667788888888888887753
No 441
>PF13934 ELYS: Nuclear pore complex assembly
Probab=40.98 E-value=3.2e+02 Score=25.86 Aligned_cols=93 Identities=16% Similarity=0.048 Sum_probs=57.4
Q ss_pred cCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHH
Q 004425 559 EGFAPDDISILGVLQACI--YSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSE-SPLL 635 (754)
Q Consensus 559 ~g~~p~~~t~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~ 635 (754)
.+++|.... .+.++. ..+++++|.+++..- .+. ...-.-++.++.+.|+.+.|+.+++.++-.. +...
T Consensus 73 f~ip~~~~~---~~~g~W~LD~~~~~~A~~~L~~p----s~~--~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~ 143 (226)
T PF13934_consen 73 FGIPPKYIK---FIQGFWLLDHGDFEEALELLSHP----SLI--PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEA 143 (226)
T ss_pred hCCCHHHHH---HHHHHHHhChHhHHHHHHHhCCC----CCC--cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHH
Confidence 346655444 344433 346777777776222 122 2233368888888999999999999885433 3444
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhc
Q 004425 636 WRTLVSVSKLMANSKFSILASKRLLD 661 (754)
Q Consensus 636 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 661 (754)
...+... ..++++.+|....+..-+
T Consensus 144 ~~~~~~~-La~~~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 144 LTLYFVA-LANGLVTEAFSFQRSYPD 168 (226)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHhCch
Confidence 4444444 677888888877666544
No 442
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.90 E-value=3.5e+02 Score=26.29 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=19.8
Q ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHh
Q 004425 394 SDVRLGTALVDIYAKGGDLKSARMLLD 420 (754)
Q Consensus 394 ~~~~~~~~li~~~~~~g~~~~A~~~~~ 420 (754)
-|......+...|.+.|++.+|+.-|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 466777888888999999988887764
No 443
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=40.78 E-value=58 Score=20.51 Aligned_cols=28 Identities=7% Similarity=0.089 Sum_probs=23.6
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 668 GSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.+|..||.+-...+++++|..-+++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4788999999999999999988887643
No 444
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=39.82 E-value=1.4e+02 Score=29.05 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 533 WNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
++.....|...|.+.+|.++.++.+. +.| +...+-.++..+...|+--.+.+.++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 44455677788888888888888777 555 445566677777788877667666666543
No 445
>PF15469 Sec5: Exocyst complex component Sec5
Probab=39.20 E-value=2.9e+02 Score=24.94 Aligned_cols=116 Identities=16% Similarity=0.225 Sum_probs=57.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHhhc
Q 004425 536 MLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFACMVDLLGRA 614 (754)
Q Consensus 536 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 614 (754)
++..-.+......++.++++..- -...-.-|.-|...|+++.++..|.++...++-.. ....+..
T Consensus 63 ll~~~~k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~-------- 128 (182)
T PF15469_consen 63 LLERREKADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK-------- 128 (182)
T ss_pred HHccHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH--------
Confidence 33333333444455555554332 12233456677888888888888888776322221 1111111
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHH
Q 004425 615 GRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 615 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
-+.+....++... ...|..|... ....+....+...+++++|++..+|..+
T Consensus 129 -v~~eve~ii~~~r----~~l~~~L~~~---~~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 129 -VWSEVEKIIEEFR----EKLWEKLLSP---PSSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred -HHHHHHHHHHHHH----HHHHHHHhCC---CCCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 1223333332221 1122222221 1466777788888888888755555443
No 446
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=38.99 E-value=2.3e+02 Score=23.71 Aligned_cols=65 Identities=17% Similarity=0.100 Sum_probs=41.3
Q ss_pred CCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHhh
Q 004425 596 GLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLW-RTLVSVSKLMANSKFSILASKRLL 660 (754)
Q Consensus 596 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~ 660 (754)
|-+--..+..+++.++.-.|..++|.++++.....+.-... ..++..|+...+.++-.++-++.+
T Consensus 61 GkP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 61 GKPCKLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred CCcccccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 33333455667777777888888888888877554443333 356777777776666665555443
No 447
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.72 E-value=61 Score=31.69 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGV 571 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 571 (754)
-|+..|....+.||+++|+.+++|..+.|+.--..+|...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4678888889999999999999999998877555565443
No 448
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=38.44 E-value=4.6e+02 Score=26.95 Aligned_cols=194 Identities=14% Similarity=0.109 Sum_probs=115.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHH--HHHHHHcCCCCCHHHHHHHHHH
Q 004425 497 ADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLL--FEEMKREGFAPDDISILGVLQA 574 (754)
Q Consensus 497 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~--~~~m~~~g~~p~~~t~~~ll~a 574 (754)
.+..+...+++.|...++|+.--+.. ....-++|+...|+.. .+-|.-..-.||..|-..++..
T Consensus 50 s~~kv~~~i~~lc~~~~~w~~Lne~i--------------~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~t 115 (439)
T KOG1498|consen 50 SNTKVLEEIMKLCFSAKDWDLLNEQI--------------RLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIET 115 (439)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Confidence 34455556666666666665433321 1222356777666542 2223322334566665555554
Q ss_pred HHh--cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCC------C--HHHHHHHHHHHH
Q 004425 575 CIY--SGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSE------S--PLLWRTLVSVSK 644 (754)
Q Consensus 575 ~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p------~--~~~~~~l~~~~~ 644 (754)
+.. .|+. |-+.. ....-..|+..+..+|++++|.+++.+.+.+- . .....--++.|.
T Consensus 116 Lr~VtegkI------yvEvE-------RarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG 182 (439)
T KOG1498|consen 116 LRTVTEGKI------YVEVE-------RARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCL 182 (439)
T ss_pred HHHhhcCce------EEeeh-------HHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 331 1211 00000 01122356677888999999999998875432 0 111122357788
Q ss_pred hcCChHHHHHHHHHhhcc---CCCC----cchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEe
Q 004425 645 LMANSKFSILASKRLLDL---EPKD----AGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFV 717 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~---~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~ 717 (754)
..+|+-.|.-+.+++-.. +|+- -..|..+..+..+.+.+=++-+.++..-+.|-.+....-|+++-..+-.|.
T Consensus 183 ~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~ 262 (439)
T KOG1498|consen 183 LRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFC 262 (439)
T ss_pred HhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEE
Confidence 899999999988887653 2331 126889999999999999999999998877766665555887766655554
No 449
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=37.93 E-value=1.4e+02 Score=33.06 Aligned_cols=61 Identities=8% Similarity=0.061 Sum_probs=19.8
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHcc
Q 004425 259 NDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAI 321 (754)
Q Consensus 259 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 321 (754)
+...-.-++..|.+.|-.+.+..+.+.+-..-.. ..-|..-+..+.++|+...+..+-+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334444555555555555555555444332211 122334444455555555544444433
No 450
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.72 E-value=3.7e+02 Score=25.64 Aligned_cols=64 Identities=11% Similarity=0.061 Sum_probs=44.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 604 FACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
+..+..++...|++-++++-..++ ...| +...|.--..+....-|..+|.+-+.++++++|.-.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 445566666777777777766655 2233 455555555555566689999999999999999843
No 451
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=37.69 E-value=4.3e+02 Score=26.44 Aligned_cols=186 Identities=11% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHhHhcCC--HhHHHHHhccC--CCCCcchHHHHHHHHHHcC-----ChhHHHHHHHH---------hHHCCCCCC--c
Q 004425 201 ISMYFHSGC--FREAENVFRGL--AYKDVRCVNFMILEYNKAG-----ESEMAFHVFVH---------LLSSDFEPN--D 260 (754)
Q Consensus 201 i~~~~~~g~--~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~---------m~~~g~~p~--~ 260 (754)
+-.+++.|. ++.+.+++..+ .+.+...|..++..+.... ..+.....|+. +.+.|..++ .
T Consensus 45 ~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 124 (324)
T PF11838_consen 45 LFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGE 124 (324)
T ss_dssp HHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--S
T ss_pred HHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccc
Q ss_pred chHHHHHHHH-hccCC-----chHHHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCChHHHHHHHHccCC-CCchhH
Q 004425 261 YTFTNVISVC-YENLG-----VEEGKQLHGLAVKFGV----VREISVGNAIVTMYGKHGMSEEAERMFDAISE-RNLISW 329 (754)
Q Consensus 261 ~t~~~ll~~~-~~~~~-----~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 329 (754)
..-...++.. ..... .+.+.+.++.....+. ..+......++....+.|..+.-..+++.... ++..-.
T Consensus 125 ~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k 204 (324)
T PF11838_consen 125 DHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEK 204 (324)
T ss_dssp CHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHH
T ss_pred cHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHH
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHh-cccCChHHHHHHHHH
Q 004425 330 TALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGC-SVCSNLELGLQLHGF 386 (754)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~ 386 (754)
..++.+++...+.+...+++......+..++......+.... ......+.+.+.+..
T Consensus 205 ~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 205 RRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 452
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=37.65 E-value=1.6e+02 Score=31.67 Aligned_cols=130 Identities=15% Similarity=0.109 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHh-hcCCHHHHHHHHHhC-CCCC--CHHHH
Q 004425 563 PDDISILGVLQACIYSGL--SEGGICLFNEIEQIYGLRPILEHFACMVDLLG-RAGRLSEAMNLINSS-PFSE--SPLLW 636 (754)
Q Consensus 563 p~~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~-~~~p--~~~~~ 636 (754)
|+..+...++.-....-- -+-|-.++-.|.. .+.|-=... .+..+|- -.|+...|.+.+... ..+| .....
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~l-n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLIL-NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEe-ecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 566665555443332211 2234444444433 333432222 2344454 478999999888654 3444 22334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 637 RTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 637 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
-.|.+.....|-...|-..+.+.+.+....+-++..++++|....+.+.|.+.++....
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 56777777888888999999999999988899999999999999999999999887644
No 453
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.52 E-value=47 Score=32.43 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHH
Q 004425 227 CVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFT 264 (754)
Q Consensus 227 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 264 (754)
-||..|...++.||+++|+.++++..+.|+.--..||.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 46778888888888888888888888887664444443
No 454
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=36.84 E-value=7.8e+02 Score=29.17 Aligned_cols=47 Identities=6% Similarity=-0.049 Sum_probs=29.7
Q ss_pred CHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Q 004425 411 DLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRL 457 (754)
Q Consensus 411 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~ 457 (754)
.+++|..-|+.+.........-|..+++....|++++-++.+.-..+
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (932)
T PRK13184 534 DFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALK 580 (932)
T ss_pred HHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 36677777777776655566666665555447777766665554443
No 455
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=36.76 E-value=1.9e+02 Score=30.61 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC--------CcchHHHHH
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK--------DAGSFILVS 674 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--------~~~~~~~l~ 674 (754)
.|...+.-|...+++++|.++..-.. +...|.+|...-.++.+..-++.+|.-+.+++.- -+.--..++
T Consensus 575 py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~mA 651 (737)
T KOG1524|consen 575 PYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQMA 651 (737)
T ss_pred ccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHHH
Confidence 35555555666666666666665542 3456666666666666666666666555544321 112233444
Q ss_pred HHHHhcCCchHHHHHHH
Q 004425 675 NMYAGQGMLDEAAKVRT 691 (754)
Q Consensus 675 ~~~~~~g~~~~a~~~~~ 691 (754)
....-.|+..||.-++.
T Consensus 652 ~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 652 ENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHhccchhhhHHHH
Confidence 44445566666655543
No 456
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.63 E-value=2.5e+02 Score=30.88 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=22.9
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhCCCH
Q 004425 366 TVIDGCSVCSNLELGLQLHGFAIKH--GYLSDVRLGTALVDIYAKGGDL 412 (754)
Q Consensus 366 ~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~ 412 (754)
+++.+|...|++-.+.++++..... |-+.=...+|..++.+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 4455555555555555555554442 2222234455555555555543
No 457
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=35.93 E-value=2.6e+02 Score=23.41 Aligned_cols=55 Identities=7% Similarity=0.058 Sum_probs=40.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHH
Q 004425 619 EAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 619 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
+++.-+-.+..-|++.+...-+++|++-+|+..|.++++-+...-+.....|-.+
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3333333456789999999999999999999999999998876655544444433
No 458
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=35.65 E-value=2.5e+02 Score=23.55 Aligned_cols=40 Identities=15% Similarity=-0.006 Sum_probs=31.0
Q ss_pred HHHHHHHhhcc--CCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 004425 652 SILASKRLLDL--EPKDAGSFILVSNMYAGQGMLDEAAKVRT 691 (754)
Q Consensus 652 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 691 (754)
...+|+.+... .-..+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45667766654 34467788889999999999999999986
No 459
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=34.91 E-value=5.3e+02 Score=26.66 Aligned_cols=124 Identities=10% Similarity=0.010 Sum_probs=70.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHH--------HHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHH
Q 004425 543 HGLGKGALLLFEEMKREGFAPDDISILG--------VLQACIYSGLSEGGICLFNEIEQIYGLRPILE----HFACMVDL 610 (754)
Q Consensus 543 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~--------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~ 610 (754)
.+++.+|.++-+..+..-..-|..|+.. +-.++...|+...-..++........+..+.+ ..+++++.
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~ 218 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRN 218 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHH
Confidence 4667777766665554322223333332 22345556666666666555544334444433 45677777
Q ss_pred HhhcCCHHHHHHHHHhCCCC--CCHHHHHHH----HHHHHhcCChHHHHHHHHHhhccCCCC
Q 004425 611 LGRAGRLSEAMNLINSSPFS--ESPLLWRTL----VSVSKLMANSKFSILASKRLLDLEPKD 666 (754)
Q Consensus 611 ~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~~~p~~ 666 (754)
|.-.+.++.|.+++.+...+ .+..-|.-. ......++++..|.+.+-+++...|++
T Consensus 219 yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 219 YLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 77788888888888876432 122233222 223345678888888887777777763
No 460
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.54 E-value=65 Score=22.97 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 004425 534 NAMLSAYALHGLGKGALLLFEEMKR 558 (754)
Q Consensus 534 ~~li~~~~~~g~~~~A~~~~~~m~~ 558 (754)
-.+|.+|.+.|++++|.++++++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3567788888888888888777664
No 461
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.53 E-value=1.4e+02 Score=31.11 Aligned_cols=63 Identities=10% Similarity=0.142 Sum_probs=37.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcc-CCCCcchHHHHHHHHHhcCCch
Q 004425 606 CMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDL-EPKDAGSFILVSNMYAGQGMLD 684 (754)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~ 684 (754)
.|+++.+-.|++..|++.++.+...... ++.. -+-+..+|+.+|-+|.-.+|+.
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~-------------------------l~~~V~~~~is~~YyvGFaylMlrRY~ 181 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKG-------------------------LYTKVPACHISTYYYVGFAYLMLRRYA 181 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccch-------------------------hhccCcchheehHHHHHHHHHHHHHHH
Confidence 4556666677777777777766432111 1111 1224556777777777777777
Q ss_pred HHHHHHHHH
Q 004425 685 EAAKVRTTM 693 (754)
Q Consensus 685 ~a~~~~~~m 693 (754)
+|.++|...
T Consensus 182 DAir~f~~i 190 (404)
T PF10255_consen 182 DAIRTFSQI 190 (404)
T ss_pred HHHHHHHHH
Confidence 777776655
No 462
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.37 E-value=1.5e+02 Score=33.74 Aligned_cols=50 Identities=22% Similarity=0.189 Sum_probs=40.4
Q ss_pred HHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHH
Q 004425 622 NLINSSPFSE--SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFI 671 (754)
Q Consensus 622 ~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 671 (754)
.+|...+..| ...+..+-++.+.+.+|+..|.....+++++.|..+.+-.
T Consensus 1071 aYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1071 AYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 3456666777 4667788899999999999999999999999998665433
No 463
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=34.04 E-value=77 Score=32.98 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=27.9
Q ss_pred CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC
Q 004425 628 PFSES--PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD 666 (754)
Q Consensus 628 ~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 666 (754)
...|. ..++++-+..+.+++|+..|-...++++++.|..
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 44442 4566677778889999999999999999999874
No 464
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.50 E-value=5.9e+02 Score=26.79 Aligned_cols=102 Identities=16% Similarity=0.093 Sum_probs=53.9
Q ss_pred ccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcC---CCCChhhHHHHH
Q 004425 358 CCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGF---SCKYTAEFNAIL 434 (754)
Q Consensus 358 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li 434 (754)
..+......++..+ .|+...+..+++.+...+...+... ...++... ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~----------------v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITLEL----------------LEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHH----------------HHHHHhhhhhccCCCccHHHHHH
Confidence 44444444454443 6788877777776654321222221 12222111 112222334444
Q ss_pred HHHhhhh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 004425 435 SGFMEKI-ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQ 477 (754)
Q Consensus 435 ~~~~~~~-~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 477 (754)
+++.+.. ..+.+.|+.++..|.+.|..|....-..+..++...
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 4444411 478999999999999998888765544444444333
No 465
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=32.80 E-value=1.8e+02 Score=22.12 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=6.2
Q ss_pred HHHHHhHHCCCCCCc
Q 004425 246 HVFVHLLSSDFEPND 260 (754)
Q Consensus 246 ~~~~~m~~~g~~p~~ 260 (754)
++++.+.+.|..++.
T Consensus 40 ~~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 40 EIVKLLLENGADINS 54 (89)
T ss_dssp HHHHHHHHTTTCTT-
T ss_pred HHHHHHHHhcccccc
Confidence 333444445544443
No 466
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.58 E-value=3.2e+02 Score=24.74 Aligned_cols=20 Identities=15% Similarity=-0.006 Sum_probs=10.0
Q ss_pred HHHHcCChHHHHHHHHHHHH
Q 004425 539 AYALHGLGKGALLLFEEMKR 558 (754)
Q Consensus 539 ~~~~~g~~~~A~~~~~~m~~ 558 (754)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34455555555555555443
No 467
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=32.13 E-value=40 Score=28.37 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=25.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPDDISILGVLQAC 575 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 575 (754)
....|.-.+|-.+|++|++.|-.||. |+.|+.++
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34457778899999999999999985 44555543
No 468
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.58 E-value=40 Score=33.38 Aligned_cols=111 Identities=11% Similarity=0.091 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 004425 579 GLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSES-PLLWRTLVSVSKLMANSKFSILAS 656 (754)
Q Consensus 579 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 656 (754)
|.++.|++.|...+. --++....|.--..++.+.++...|++=++.. .+.|| ...|..-..+-+..|++++|...+
T Consensus 128 G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 445555555555543 12222334444445555555555555544422 33343 223333344445556777777777
Q ss_pred HHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 004425 657 KRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 657 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
..+.+++-+ ..+--.|-.+.-..+..++-.+.+++
T Consensus 206 ~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er 240 (377)
T KOG1308|consen 206 ALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYER 240 (377)
T ss_pred HHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHH
Confidence 666666544 22333344444444444444443333
No 469
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=31.55 E-value=5e+02 Score=25.39 Aligned_cols=92 Identities=10% Similarity=0.012 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHH----HcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc----
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMK----REGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL---- 601 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---- 601 (754)
.+|..+..-|++.++.+.+.++..+.. ..|.+.|.. +-..+.-.|....-+++-++..+.|.++ |-.-+.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk-GgDWeRrNRy 194 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK-GGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCCHHhhhhH
Confidence 467788888999999888887766544 457777664 3333444555555667777888888774 443332
Q ss_pred cHHHHHHHHHhhcCCHHHHHHHHH
Q 004425 602 EHFACMVDLLGRAGRLSEAMNLIN 625 (754)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~ 625 (754)
.+|..+-.+ ...++.+|-.++.
T Consensus 195 K~Y~Gi~~m--~~RnFkeAa~Ll~ 216 (412)
T COG5187 195 KVYKGIFKM--MRRNFKEAAILLS 216 (412)
T ss_pred HHHHHHHHH--HHHhhHHHHHHHH
Confidence 233322222 2346667766654
No 470
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.48 E-value=1.5e+02 Score=28.60 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=7.2
Q ss_pred HHhcCCHHHHHHHHHHH
Q 004425 575 CIYSGLSEGGICLFNEI 591 (754)
Q Consensus 575 ~~~~g~~~~a~~~~~~~ 591 (754)
|.+.|++++|.++|+.+
T Consensus 188 y~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 34444444444444443
No 471
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=31.37 E-value=5.6e+02 Score=25.84 Aligned_cols=147 Identities=9% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHHhhcCC------------HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHH
Q 004425 588 FNEIEQIYGLRPILEHFACMVDLLGRAGR------------LSEAMNLINSS--PFSESPLLWRTLVSVSKLMANSKFSI 653 (754)
Q Consensus 588 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~ 653 (754)
|++... .-+-|+.+|-.++..--..-. .+.-+.+++++ ..+.+...+..++..+.+..+.+...
T Consensus 8 l~~~v~--~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 8 LNRRVR--ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHH--hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q ss_pred HHHHHhhccCCCCcchHHHHHHHHHh---cCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHH
Q 004425 654 LASKRLLDLEPKDAGSFILVSNMYAG---QGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIY 730 (754)
Q Consensus 654 ~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (754)
+.+++++..+|++...|....+.... .-.+++...+|.+.-..-.....+. .......-.-...+.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~-----------~~~~~~~~~~e~~~l 154 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR-----------MTSHPDLPELEEFML 154 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc-----------cccccchhhHHHHHH
Q ss_pred HHHHHHHHHHHHcCCCC
Q 004425 731 SKLDLLNDEMKLKVKDS 747 (754)
Q Consensus 731 ~~l~~l~~~~~~~~~~~ 747 (754)
..+-++..-++++||.+
T Consensus 155 ~v~~r~~~fl~~aG~~E 171 (321)
T PF08424_consen 155 YVFLRLCRFLRQAGYTE 171 (321)
T ss_pred HHHHHHHHHHHHCCchH
No 472
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=31.25 E-value=2.6e+02 Score=25.78 Aligned_cols=92 Identities=12% Similarity=0.061 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcch-HHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCE
Q 004425 634 LLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGS-FILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSK 712 (754)
Q Consensus 634 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~ 712 (754)
....+++..|...||++.|-+++--++...+-|... |..=+.++.+.+.-....+.++.|...-.....-...+.....
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~ 121 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRII 121 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhcc
Confidence 345678888888899999999998888876655443 4444456777777666667777775432221111111222224
Q ss_pred EEEEecCCCCCCC
Q 004425 713 LHHFVASGKDHPE 725 (754)
Q Consensus 713 ~~~~~~~~~~~~~ 725 (754)
.+.|-+|.+.|..
T Consensus 122 ~pvfrsGs~t~tp 134 (199)
T PF04090_consen 122 APVFRSGSRTHTP 134 (199)
T ss_pred cccccCCCcccch
Confidence 5677788888844
No 473
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.17 E-value=2.5e+02 Score=21.69 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 004425 485 SLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGIS 526 (754)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 526 (754)
++|+.....|+..|+.+|..+++...-.=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677777788888888888888887776666777777776663
No 474
>PRK14015 pepN aminopeptidase N; Provisional
Probab=30.69 E-value=9.6e+02 Score=28.35 Aligned_cols=125 Identities=11% Similarity=0.113 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 004425 564 DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL-EHFACMVDLLGRAGRLSEAMNLINSSPFSE-SPLLWRTLVS 641 (754)
Q Consensus 564 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~ 641 (754)
+..--...+.++.+.+. .+....++...++..-.|-+ .-|-++...-...+-++...++.+.-.+.+ ++.-.++|++
T Consensus 713 ~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral~~ 791 (875)
T PRK14015 713 NMTDRLAALSALVNADL-PERDEALADFYDRWKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSLIG 791 (875)
T ss_pred CHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHH
Confidence 33333445555554443 23333444443333333432 233333332222333444444443323333 5677889999
Q ss_pred HHHhcC-------ChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHH
Q 004425 642 VSKLMA-------NSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKV 689 (754)
Q Consensus 642 ~~~~~g-------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 689 (754)
++...+ +...=.-+.+.++++++-|+..-..|+..+.+-.++++..+.
T Consensus 792 ~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~ 846 (875)
T PRK14015 792 AFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQA 846 (875)
T ss_pred HHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHHH
Confidence 885433 222234456788899999999999999999999998887764
No 475
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=30.68 E-value=3.3e+02 Score=22.94 Aligned_cols=114 Identities=10% Similarity=0.041 Sum_probs=0.0
Q ss_pred CChhHHHHHhccCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChh----------hHHHHHHHhccCCChH
Q 004425 107 NRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEH----------TCSVILEACSLLEDRI 176 (754)
Q Consensus 107 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----------t~~~ll~~~~~~~~~~ 176 (754)
.++.-|..++......+ .....++.+....-.-.++++..++....-.|..+ ++..+=+.....+.+.
T Consensus 3 nNp~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VR 80 (126)
T PF10155_consen 3 NNPNIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVR 80 (126)
T ss_pred CcHHHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhh
Q ss_pred HHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCC
Q 004425 177 FGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAY 222 (754)
Q Consensus 177 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 222 (754)
..-.++..+++.|+......+.-+-..+.+..++.+|..+|+-+..
T Consensus 81 lvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk~ 126 (126)
T PF10155_consen 81 LVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLKN 126 (126)
T ss_pred hHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHhC
No 476
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=30.43 E-value=9.6e+02 Score=28.27 Aligned_cols=152 Identities=14% Similarity=0.088 Sum_probs=79.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHh
Q 004425 534 NAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL-EHFACMVDLLG 612 (754)
Q Consensus 534 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 612 (754)
|..+..++..++.+......++..+. .+..--.+.+.++...+. .+....++...+...-.|-+ .-|-.+...-.
T Consensus 676 n~~l~~l~~~~~~~~~~~~~~~~~~a---~~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~ 751 (863)
T TIGR02414 676 NACLSYLSAADDAEIRNLALEQFKSA---DNMTDRLAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSP 751 (863)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCC
Confidence 34444445445443222333333332 233333344555554433 23333444444433333432 22333332222
Q ss_pred hcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------ChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCch
Q 004425 613 RAGRLSEAMNLINSSPFSE-SPLLWRTLVSVSKLMA-------NSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLD 684 (754)
Q Consensus 613 ~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 684 (754)
..+-++...++.+.-.+.+ ++.-.++|++++...+ +...=.-+.+.++++++-|+.+-..|+..+.+-.+++
T Consensus 752 ~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~ 831 (863)
T TIGR02414 752 RPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLD 831 (863)
T ss_pred cccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCC
Confidence 2333344444443323333 5677889999886433 2222344567888999999999999999999999988
Q ss_pred HHHHH
Q 004425 685 EAAKV 689 (754)
Q Consensus 685 ~a~~~ 689 (754)
+..+.
T Consensus 832 ~~r~~ 836 (863)
T TIGR02414 832 PKRQE 836 (863)
T ss_pred HHHHH
Confidence 87764
No 477
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=30.37 E-value=5.4e+02 Score=25.31 Aligned_cols=129 Identities=11% Similarity=0.042 Sum_probs=63.3
Q ss_pred CHHHHHHHHhccCCCC-hhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----C--CH
Q 004425 514 SIDGAFQIFKGISDRD-IVSWNAMLSAYAL----HGLGKGALLLFEEMKREGFAPDDISILGVLQACIYS-----G--LS 581 (754)
Q Consensus 514 ~~~~A~~~~~~~~~~~-~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g--~~ 581 (754)
+...|..+|....+.+ ......|...|.. ..+..+|...|++..+.|..+-..+...+...+... - +.
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~ 171 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDD 171 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence 3555666665444332 2233333333333 236677777777777766554322222333333322 1 22
Q ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004425 582 EGGICLFNEIEQIYGLRPILEHFACMVDLLGR----AGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMA 647 (754)
Q Consensus 582 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 647 (754)
..|...|.++... + +......+..+|.. ..+.++|..+|+......+......+. .+...|
T Consensus 172 ~~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g 236 (292)
T COG0790 172 KKALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNG 236 (292)
T ss_pred HhHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcC
Confidence 3677777777662 3 33334444444432 347788888887663333433333333 444444
No 478
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=30.10 E-value=6.3e+02 Score=26.03 Aligned_cols=105 Identities=11% Similarity=0.078 Sum_probs=54.3
Q ss_pred CcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHH--HHHHHHcCCCCCHHHHHHH
Q 004425 393 LSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVL--FSQQRLAGMEPDPVTFSRL 470 (754)
Q Consensus 393 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~--~~~m~~~g~~p~~~~~~~l 470 (754)
..+..+...+++.|...++|+.--+.. ..+.++ .|+...|+.. .+-|.-..-.||..|-..+
T Consensus 49 ~s~~kv~~~i~~lc~~~~~w~~Lne~i---------------~~Lskk-rgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~l 112 (439)
T KOG1498|consen 49 ASNTKVLEEIMKLCFSAKDWDLLNEQI---------------RLLSKK-RGQLKQAIQSMVQQAMTYIDGTPDLETKIKL 112 (439)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHH---------------HHHHHH-hhHHHHHHHHHHHHHHHhccCCCCchhHHHH
Confidence 344555666666666666666543332 222221 5666666542 1222222335666655555
Q ss_pred HHHHhcccchHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 004425 471 LSLSASQACLVRGRSLHAYSIKTGYAA---DVIVGNALITMYAKCGSIDGAFQIFKGIS 526 (754)
Q Consensus 471 l~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 526 (754)
+..+.. ..+..+-. -...-..|...+-.+|++++|..++.+..
T Consensus 113 i~tLr~-------------VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~ 158 (439)
T KOG1498|consen 113 IETLRT-------------VTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQ 158 (439)
T ss_pred HHHHHH-------------hhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence 543321 11111110 12233456778889999999999987764
No 479
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.01 E-value=4.2e+02 Score=24.01 Aligned_cols=45 Identities=16% Similarity=0.066 Sum_probs=28.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCc
Q 004425 638 TLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGML 683 (754)
Q Consensus 638 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 683 (754)
..+..|.+.|.+++|.+++++.++ +|++...-.-|..+-.....+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~ 160 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPA 160 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccc
Confidence 345678888888888888888888 776554444444333333333
No 480
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=29.85 E-value=7.2e+02 Score=26.62 Aligned_cols=103 Identities=13% Similarity=0.158 Sum_probs=64.4
Q ss_pred CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH---hhcCCHHHHHHHHHhC--CCCCCHH
Q 004425 561 FAPDDISI-LGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLL---GRAGRLSEAMNLINSS--PFSESPL 634 (754)
Q Consensus 561 ~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~~--~~~p~~~ 634 (754)
..|+..|+ +.++.-+-..|-+.+|...+..+.. --+|+...|..||..= ..+| +.-+.++++.+ .+..|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 34555544 3355555666667777777776654 3344555666666543 2233 56666666655 2236778
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhc-cCCCC
Q 004425 635 LWRTLVSVSKLMANSKFSILASKRLLD-LEPKD 666 (754)
Q Consensus 635 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~ 666 (754)
.|...+.--..+|..+-+-.++.++.+ ++|+.
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 888888777788888888888877776 45553
No 481
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=29.68 E-value=7.1e+02 Score=26.52 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=45.3
Q ss_pred HHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCc
Q 004425 640 VSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAG 703 (754)
Q Consensus 640 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 703 (754)
+.++....++..+.+-.+.+....-+.+.....-++.+...|++..|.+.+-. .++.+++|
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~---sni~~~~g 273 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLV---SNIHKEAG 273 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHh---cccccccC
Confidence 44555666777777777777777777777888889999999999999988754 34444444
No 482
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=29.44 E-value=7.4e+02 Score=26.62 Aligned_cols=155 Identities=16% Similarity=0.142 Sum_probs=80.7
Q ss_pred HHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 004425 430 FNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMY 509 (754)
Q Consensus 430 ~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 509 (754)
.-+++..+.. +....-...+..+|..-| -+...|..++..|... ..+.-..+|+++.+..+ .|+....-|+..|
T Consensus 69 l~~~~~~f~~--n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y 142 (711)
T COG1747 69 LVTLLTIFGD--NHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY 142 (711)
T ss_pred HHHHHHHhcc--chHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH
Confidence 3444555555 555566666666676643 4556677777777666 55666677777777654 2445555666666
Q ss_pred HhcCCHHHHHHHHhccCCC------Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcC
Q 004425 510 AKCGSIDGAFQIFKGISDR------DI---VSWNAMLSAYALHGLGKGALLLFEEMKR-EGFAPDDISILGVLQACIYSG 579 (754)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g 579 (754)
.+ ++.+.+...|..+... +. ..|.-++..- ..+.+..+.+..+... .|..--.+.+--+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 66 6667777776655211 11 1343333211 1233444444444432 222222233333444455555
Q ss_pred CHHHHHHHHHHHHH
Q 004425 580 LSEGGICLFNEIEQ 593 (754)
Q Consensus 580 ~~~~a~~~~~~~~~ 593 (754)
++++|++++..+.+
T Consensus 220 N~~eai~Ilk~il~ 233 (711)
T COG1747 220 NWTEAIRILKHILE 233 (711)
T ss_pred CHHHHHHHHHHHhh
Confidence 55555555555544
No 483
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.26 E-value=2.6e+02 Score=31.22 Aligned_cols=165 Identities=12% Similarity=0.064 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhccCC-CChh----------HHHHHHHHHHHcCChHH
Q 004425 483 GRSLHAYSIKTGYAAD---VIVGNALITMYAKCGSIDGAFQIFKGISD-RDIV----------SWNAMLSAYALHGLGKG 548 (754)
Q Consensus 483 a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~----------~~~~li~~~~~~g~~~~ 548 (754)
-..++.+|+.+=-.|+ ..+...++-.|-...+++...++.+.+.. ||.. .|.--++--.+-|+-++
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRak 261 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAK 261 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHH
Confidence 3445556665433343 34445556666677778888888777654 3321 12222222234577888
Q ss_pred HHHHHHHHHHc--CCCCCHHHHHHHH-------HHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCH-H
Q 004425 549 ALLLFEEMKRE--GFAPDDISILGVL-------QACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRL-S 618 (754)
Q Consensus 549 A~~~~~~m~~~--g~~p~~~t~~~ll-------~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~ 618 (754)
|+...-.|.+. .+.||......-| +.|...+..+.|.++|++. +.+.|+...--.+..++..+|+. +
T Consensus 262 AL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~Wyrka---FeveP~~~sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKA---FEVEPLEYSGINLATLLRAAGEHFE 338 (1226)
T ss_pred HHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHH---hccCchhhccccHHHHHHHhhhhcc
Confidence 88877766653 2557765433222 2355667778888888887 66788765544555555555542 2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 004425 619 EAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRL 659 (754)
Q Consensus 619 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 659 (754)
...+ ++.++ ...++| ..+.|.++.-...++-+
T Consensus 339 ns~E-lq~Ig-----mkLn~L---lgrKG~leklq~YWdV~ 370 (1226)
T KOG4279|consen 339 NSLE-LQQIG-----MKLNSL---LGRKGALEKLQEYWDVA 370 (1226)
T ss_pred chHH-HHHHH-----HHHHHH---hhccchHHHHHHHHhHH
Confidence 2222 22221 122333 34667776666555443
No 484
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=29.19 E-value=9.8e+02 Score=27.99 Aligned_cols=122 Identities=15% Similarity=0.035 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 004425 482 RGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGF 561 (754)
Q Consensus 482 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 561 (754)
.|..+-..|.+.. ++||+++.+.|..-.-.+.++.-.+.|.. -.....+.-.+.|.++..---
T Consensus 1165 da~klk~~me~qk--------~tli~AL~kKg~a~ak~e~l~g~~e~dae---------ee~s~ld~~~e~y~el~kw~d 1227 (1304)
T KOG1114|consen 1165 DAVKLKKKMEKQK--------DTLIDALVKKGEAFAKYEALKGHKEQDAE---------EELSKLDSYNENYQELLKWLD 1227 (1304)
T ss_pred hHHHHHHHHHHHH--------HHHHHHHHHhhhHHhhhhhhcccccccch---------hhhhhhhhHHHHHHHHHHHhh
Confidence 3566666665432 56777777766432222222222222211 011223334455555553211
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHH
Q 004425 562 APDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEA 620 (754)
Q Consensus 562 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 620 (754)
.-|..++..-..-....|++..|.+++.++.+..+-.++..+|..+++++...|.-.-|
T Consensus 1228 ~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H~~ 1286 (1304)
T KOG1114|consen 1228 ASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNHLA 1286 (1304)
T ss_pred cCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchHhH
Confidence 22444444445555667888888888888888778888888888888888877766444
No 485
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=28.52 E-value=5.4e+02 Score=25.51 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=24.8
Q ss_pred HHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHH
Q 004425 246 HVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAV 287 (754)
Q Consensus 246 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 287 (754)
++|+.|...++.|.-..|.-+.-.+.+.=.+..+..+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 455556666666666666555555555555566666666554
No 486
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.81 E-value=2.2e+02 Score=25.41 Aligned_cols=36 Identities=11% Similarity=0.032 Sum_probs=15.5
Q ss_pred CchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 004425 275 GVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGM 310 (754)
Q Consensus 275 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 310 (754)
+.-.|.++++.+.+.+...+..|.-.-++.+.+.|-
T Consensus 40 ~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 40 GAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 333444444444444444443333333344444443
No 487
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=27.57 E-value=2.3e+02 Score=30.46 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=39.6
Q ss_pred hHHHHHHHHccCChhHHHHHhccCCCC--Ch---hhHHHHHHHHhcCCChhHHHHHHHHHHhC
Q 004425 96 ANNLINLYAKFNRLDVAQKLFDGMLVR--SA---ITWTSLIKGYLDDGDYESVLGIACDMYRS 153 (754)
Q Consensus 96 ~~~li~~~~~~~~~~~A~~~~~~~~~~--~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 153 (754)
...|+.-|.+.+.+++|..++..|.-- .. .+.+.+.+.+.+..--.+....++.+...
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 446888999999999999999988321 22 34455566666666555666666666544
No 488
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=27.49 E-value=4.8e+02 Score=23.84 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=39.3
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHhCC--------------CCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 004425 468 SRLLSLSASQACLVRGRSLHAYSIKTGY--------------AADVIVGNALITMYAKCGSIDGAFQIFKGI 525 (754)
Q Consensus 468 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 525 (754)
.+++-.|.+..++.+++++++.+.+..+ .+--.+.|.-...+.++|.++.|..++++-
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 3556667788888888888888865422 223344566667777777777777777643
No 489
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.42 E-value=2.4e+02 Score=30.90 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=21.9
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHC--CCCcHHHHHHHHHHhHhcCC
Q 004425 164 VILEACSLLEDRIFGEQIHAFAIKSG--FENNVFVGTSLISMYFHSGC 209 (754)
Q Consensus 164 ~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~ 209 (754)
+++.+|...|++-.+.++++..+... -..=...+|..|+-+.+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC
Confidence 55566666666655555555554432 11122334444444444443
No 490
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=27.22 E-value=1.3e+02 Score=18.17 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=16.6
Q ss_pred ChHHHHHHHHHhhccCCCCcchHHHH
Q 004425 648 NSKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 648 ~~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
.++.|..+|++.+...|+ +..|...
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 456777788887777766 5555544
No 491
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=27.21 E-value=1.1e+03 Score=28.04 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHhccCCC
Q 004425 502 GNALITMYAKCG--SIDGAFQIFKGISDR 528 (754)
Q Consensus 502 ~~~li~~~~~~g--~~~~A~~~~~~~~~~ 528 (754)
...++.+|.+.+ ++++|+....++.+.
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 345666676666 677777776666544
No 492
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=27.15 E-value=2e+02 Score=24.20 Aligned_cols=35 Identities=9% Similarity=0.086 Sum_probs=26.6
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
..-+.+.|+.+|+++++..|++-.++..|++.+-.
T Consensus 88 aKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 88 AKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp TTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 44577899999999999999999888888776554
No 493
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.94 E-value=4.9e+02 Score=23.80 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC------CCChhhHHHHHH-HHhhhhcCCHHHHHH
Q 004425 378 ELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFS------CKYTAEFNAILS-GFMEKIADDEEDVMV 450 (754)
Q Consensus 378 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~-~~~~~~~~~~~~A~~ 450 (754)
+++.++-.++.. ++..+-.....|++++|..-++.+. .+-...|..+.. +++......+-+|..
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Q ss_pred HHHHHHHcCCCCCH---HHHHHHHHHHhcc--------------cchHHHHHHHHHHHH
Q 004425 451 LFSQQRLAGMEPDP---VTFSRLLSLSASQ--------------ACLVRGRSLHAYSIK 492 (754)
Q Consensus 451 ~~~~m~~~g~~p~~---~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~ 492 (754)
++.-....+++... +.+...+.+.+.. |+++.|.++++-|.+
T Consensus 91 l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 91 LYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 494
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.88 E-value=3.8e+02 Score=22.48 Aligned_cols=43 Identities=7% Similarity=-0.071 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 004425 548 GALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNE 590 (754)
Q Consensus 548 ~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 590 (754)
++.++|+.|..+|+--... -|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6666666666666554443 344444555556666666666543
No 495
>COG4472 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.29 E-value=1.5e+02 Score=22.03 Aligned_cols=34 Identities=9% Similarity=0.170 Sum_probs=26.9
Q ss_pred EEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCCCCC
Q 004425 712 KLHHFVASGKDHPESEEIYSKLDLLNDEMKLKVKDSS 748 (754)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 748 (754)
.+..|-.+| +...++...|...+..+++.||.|-
T Consensus 6 ~T~~f~~~d---~~~~~v~e~L~~VY~sL~ekGYNpi 39 (88)
T COG4472 6 ETMRFDVGD---SDKKDVKETLNDVYNSLEEKGYNPI 39 (88)
T ss_pred ceeeeecCC---ChHHHHHHHHHHHHHHHHHcCCChH
Confidence 445566665 5667889999999999999999884
No 496
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=26.26 E-value=1.2e+02 Score=29.74 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHhCCCCCccHHH-HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 004425 561 FAPDDISILGVLQAC-IYSGLSEGGICLFNEIEQIYGLRPILEHFA-CMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLW 636 (754)
Q Consensus 561 ~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 636 (754)
-.|+..++...-.+| .+.|.+.+...+|.++.... +.+++.|- |-..-|...++++.+..+|.+. ...| ++..|
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh--P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH--PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 345555544444444 46678888889998887743 33444433 2344566788999999998754 4444 57788
Q ss_pred HHHHH
Q 004425 637 RTLVS 641 (754)
Q Consensus 637 ~~l~~ 641 (754)
-....
T Consensus 180 ~eyfr 184 (435)
T COG5191 180 IEYFR 184 (435)
T ss_pred HHHHH
Confidence 76654
No 497
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=26.04 E-value=90 Score=26.35 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=24.4
Q ss_pred CCcchhHHHHHHHHHhCCCCChhhhHHHHHHH
Q 004425 72 GDLKLGQAVHAFLLKSGSQNDTFEANNLINLY 103 (754)
Q Consensus 72 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 103 (754)
|.-..+..+|..|++.|.+|| .|+.|+...
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 666788999999999999888 577777653
No 498
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=25.76 E-value=2.6e+02 Score=22.69 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=10.2
Q ss_pred HHHHHhhhhcCCHHHHHHHHHHH
Q 004425 433 ILSGFMEKIADDEEDVMVLFSQQ 455 (754)
Q Consensus 433 li~~~~~~~~~~~~~A~~~~~~m 455 (754)
++..|.. .++.++|...++++
T Consensus 8 ~l~ey~~--~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFS--SGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHH--HT-HHHHHHHHHHT
T ss_pred HHHHHhc--CCCHHHHHHHHHHh
Confidence 3344444 55555555555554
No 499
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=25.34 E-value=8.6e+02 Score=26.06 Aligned_cols=239 Identities=10% Similarity=0.001 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc------chHHHHHHHHHHHHhC-CC-CchhHHHHHHHHHHhcCCHH-
Q 004425 446 EDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQA------CLVRGRSLHAYSIKTG-YA-ADVIVGNALITMYAKCGSID- 516 (754)
Q Consensus 446 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~~-~~-~~~~~~~~li~~~~~~g~~~- 516 (754)
+....+|++..+. -|+...+...|..|...- .+.....+++...+.+ .. .....|..+.-.+.+.....
T Consensus 299 s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence 3344566655543 455566666666664432 2333444444444432 22 23445555555555554433
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHHHc-CChHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHH--HHHHHH
Q 004425 517 GAFQIFKGISDRDIVSWNAMLSAYALH-GLGKGA-LLLFEEMKREGFAPDDISILGVLQACIYSGL-SEGGI--CLFNEI 591 (754)
Q Consensus 517 ~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A-~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~--~~~~~~ 591 (754)
-|..+..+....+...|-.-+...... .+++-- .+++......-..+-...|+... .|+ .+... .++...
T Consensus 377 ~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 377 VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 334444355556666666555544422 122211 12222222211111222333332 222 22211 122222
Q ss_pred HHHhCCCCCccH-HHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH--hcCChHHHHHHHHHhhccCCCC
Q 004425 592 EQIYGLRPILEH-FACMVDLLGRAGRLSEAMNLINSSPF--SESPLLWRTLVSVSK--LMANSKFSILASKRLLDLEPKD 666 (754)
Q Consensus 592 ~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~ 666 (754)
.. -..|+..+ -+.+++.+.+.|-.++|...+.+... +|+...++.++..-. ...+..-+...|+.+..-...+
T Consensus 452 ~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d 529 (568)
T KOG2396|consen 452 LS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGAD 529 (568)
T ss_pred HH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCC
Confidence 22 34455544 45788889999999999999987732 336667776665432 3345777888888887765577
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 667 AGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 667 ~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
+..|...-..-...|+-+.+-.++.+.
T Consensus 530 ~~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred hHHHHHHHHhhccCCCcccccHHHHHH
Confidence 777777666666778877777775544
No 500
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=24.24 E-value=1.1e+03 Score=27.03 Aligned_cols=176 Identities=15% Similarity=0.053 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 004425 444 DEEDVMVLFSQQRL--------AGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSI 515 (754)
Q Consensus 444 ~~~~A~~~~~~m~~--------~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 515 (754)
..++...+++.... .++..+......+...+ .|+...+..+++.+...........-. +..-.-...+
T Consensus 169 s~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~--It~~~~~e~l 244 (725)
T PRK13341 169 SDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID--ITLAIAEESI 244 (725)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee--ccHHHHHHHH
Q ss_pred HHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHH
Q 004425 516 DGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSG-----LSEGGICLFNE 590 (754)
Q Consensus 516 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~ 590 (754)
.+...+++.-........+.++..... ++.+.|+..+.+|++.|..|....-..++.+...-| ...-|...+..
T Consensus 245 ~~~~~~ydk~gd~hyd~Isa~~ksirg-sD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a 323 (725)
T PRK13341 245 QQRAVLYDKEGDAHFDTISAFIKSLRG-SDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAA 323 (725)
T ss_pred HHhhhhcccCCCCCHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Q ss_pred HHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHh
Q 004425 591 IEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINS 626 (754)
Q Consensus 591 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (754)
... .|++-........+-.++.+-+-..+ .-+++
T Consensus 324 ~~~-~g~pE~~~~laq~~~~la~apKSns~-~a~~~ 357 (725)
T PRK13341 324 FER-VGLPEGLYPLAQAALYLATAPKSNSV-LGFFD 357 (725)
T ss_pred HHH-hCCcchhhHHHHHHHHHHcCCCccHH-HHHHH
Done!