Query 004425
Match_columns 754
No_of_seqs 756 out of 4793
Neff 11.0
Searched_HMMs 29240
Date Tue Mar 26 00:50:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.2E-41 1.4E-45 375.4 40.4 499 103-679 63-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.8E-41 1.7E-45 374.9 40.1 480 204-696 63-579 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.5E-28 5.2E-33 261.3 18.4 210 141-372 7-221 (501)
4 4g26_A Pentatricopeptide repea 100.0 3.5E-28 1.2E-32 258.5 20.5 185 124-308 26-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.1E-25 7.3E-30 233.8 40.1 372 267-682 6-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 6.8E-25 2.3E-29 229.9 39.8 351 333-695 6-367 (388)
7 2gw1_A Mitochondrial precursor 99.9 2.2E-22 7.7E-27 219.5 31.1 437 227-673 8-489 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.9E-22 1.3E-26 217.6 31.1 424 262-696 8-478 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.9E-21 9.9E-26 206.8 33.0 335 325-692 25-405 (450)
10 3fp2_A TPR repeat-containing p 99.9 5.6E-21 1.9E-25 209.6 33.7 420 226-695 26-490 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 2.2E-20 7.5E-25 199.9 34.5 347 292-667 23-415 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.8E-19 6E-24 197.7 33.8 231 435-672 251-501 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 8.7E-16 3E-20 172.3 59.9 347 298-688 988-1376(1630)
14 3ieg_A DNAJ homolog subfamily 99.8 7.6E-18 2.6E-22 173.9 35.2 322 362-742 4-355 (359)
15 1xi4_A Clathrin heavy chain; a 99.8 9.3E-15 3.2E-19 164.1 60.9 499 61-624 842-1378(1630)
16 3ieg_A DNAJ homolog subfamily 99.8 1.3E-17 4.5E-22 172.2 32.8 323 325-680 2-353 (359)
17 3hym_B Cell division cycle pro 99.8 1.7E-17 5.8E-22 169.2 30.0 286 393-684 19-322 (330)
18 3hym_B Cell division cycle pro 99.8 9.7E-17 3.3E-21 163.5 28.0 264 424-695 19-298 (330)
19 2ooe_A Cleavage stimulation fa 99.8 3.3E-15 1.1E-19 162.9 40.2 210 481-696 255-492 (530)
20 1b89_A Protein (clathrin heavy 99.8 2.7E-17 9.2E-22 166.0 21.2 285 307-627 15-308 (449)
21 1fch_A Peroxisomal targeting s 99.8 3.7E-17 1.3E-21 169.6 23.1 279 406-692 35-355 (368)
22 2xm6_A Protein corresponding t 99.8 4.1E-15 1.4E-19 160.3 39.7 354 308-680 56-453 (490)
23 1b89_A Protein (clathrin heavy 99.7 1E-16 3.5E-21 161.8 22.8 221 206-457 15-235 (449)
24 3mkr_A Coatomer subunit epsilo 99.7 8.1E-16 2.8E-20 152.6 29.2 249 408-668 11-270 (291)
25 4eqf_A PEX5-related protein; a 99.7 7E-17 2.4E-21 167.3 21.0 261 426-692 64-352 (365)
26 2xm6_A Protein corresponding t 99.7 3.6E-14 1.2E-18 152.9 41.5 354 324-698 37-434 (490)
27 2ooe_A Cleavage stimulation fa 99.7 3.6E-14 1.2E-18 154.6 39.3 423 191-665 10-495 (530)
28 4g1t_A Interferon-induced prot 99.7 5.9E-15 2E-19 158.7 29.8 367 325-706 50-469 (472)
29 1fch_A Peroxisomal targeting s 99.7 1.3E-15 4.5E-20 157.8 23.5 283 307-661 37-358 (368)
30 3cv0_A Peroxisome targeting si 99.7 1.1E-15 3.6E-20 155.6 22.4 256 430-693 24-312 (327)
31 4eqf_A PEX5-related protein; a 99.7 6.2E-16 2.1E-20 160.1 20.7 230 464-696 65-310 (365)
32 3spa_A Mtrpol, DNA-directed RN 99.7 1.6E-17 5.4E-22 180.6 7.6 150 90-239 124-286 (1134)
33 3spa_A Mtrpol, DNA-directed RN 99.7 1.4E-17 4.7E-22 181.1 6.6 131 191-321 124-262 (1134)
34 4g1t_A Interferon-induced prot 99.7 3.5E-14 1.2E-18 152.6 29.1 387 225-674 51-471 (472)
35 2pl2_A Hypothetical conserved 99.6 5.4E-15 1.9E-19 140.0 18.3 193 496-693 2-211 (217)
36 3mkr_A Coatomer subunit epsilo 99.6 1.8E-13 6.3E-18 135.6 29.1 251 304-567 8-270 (291)
37 3uq3_A Heat shock protein STI1 99.6 2.1E-14 7.1E-19 140.3 21.2 218 466-696 7-236 (258)
38 3cv0_A Peroxisome targeting si 99.6 9E-14 3.1E-18 141.2 25.4 228 326-593 21-268 (327)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 9.6E-14 3.3E-18 137.1 21.8 240 442-690 18-269 (275)
40 3uq3_A Heat shock protein STI1 99.6 8E-14 2.7E-18 136.1 19.6 233 429-676 7-256 (258)
41 3u4t_A TPR repeat-containing p 99.6 1.3E-13 4.5E-18 135.9 18.9 253 399-682 6-270 (272)
42 1ouv_A Conserved hypothetical 99.5 3.6E-12 1.2E-16 125.6 26.1 219 468-698 10-253 (273)
43 2h6f_A Protein farnesyltransfe 99.5 7E-13 2.4E-17 135.9 20.0 243 428-680 98-366 (382)
44 3e4b_A ALGK; tetratricopeptide 99.5 1.7E-12 5.8E-17 137.6 23.2 374 268-695 11-420 (452)
45 2q7f_A YRRB protein; TPR, prot 99.5 3.2E-13 1.1E-17 130.5 16.2 203 470-676 29-236 (243)
46 2ho1_A Type 4 fimbrial biogene 99.5 9E-13 3.1E-17 128.2 19.4 195 499-696 37-238 (252)
47 2h6f_A Protein farnesyltransfe 99.5 1.1E-12 3.8E-17 134.4 20.7 223 465-693 98-344 (382)
48 2q7f_A YRRB protein; TPR, prot 99.5 3.8E-13 1.3E-17 129.9 16.5 196 497-696 21-222 (243)
49 2ho1_A Type 4 fimbrial biogene 99.5 3.5E-12 1.2E-16 124.0 23.0 204 466-672 39-248 (252)
50 3vtx_A MAMA; tetratricopeptide 99.5 1.5E-12 5E-17 119.7 19.2 164 529-696 4-170 (184)
51 2vq2_A PILW, putative fimbrial 99.5 1.4E-12 4.9E-17 124.1 19.4 195 498-695 7-210 (225)
52 1ouv_A Conserved hypothetical 99.5 1.2E-11 4.3E-16 121.7 25.9 227 426-667 5-256 (273)
53 3e4b_A ALGK; tetratricopeptide 99.5 3.2E-12 1.1E-16 135.4 22.7 344 332-699 9-390 (452)
54 2vq2_A PILW, putative fimbrial 99.5 5.7E-12 2E-16 119.9 22.0 205 466-673 10-222 (225)
55 4abn_A Tetratricopeptide repea 99.4 4.6E-13 1.6E-17 142.9 14.1 192 498-693 101-318 (474)
56 3sf4_A G-protein-signaling mod 99.4 3.5E-12 1.2E-16 133.8 20.3 127 567-693 189-333 (406)
57 3u4t_A TPR repeat-containing p 99.4 1.9E-11 6.4E-16 120.3 24.3 228 361-593 3-249 (272)
58 4a1s_A PINS, partner of inscut 99.4 2E-12 6.8E-17 136.0 18.3 257 435-695 56-371 (411)
59 2pl2_A Hypothetical conserved 99.4 7.3E-12 2.5E-16 118.3 20.3 111 544-659 98-211 (217)
60 3ro2_A PINS homolog, G-protein 99.4 6.1E-12 2.1E-16 128.0 20.3 258 435-696 13-332 (338)
61 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.2E-11 4.1E-16 121.8 21.1 239 339-588 18-269 (275)
62 4gyw_A UDP-N-acetylglucosamine 99.4 3.7E-12 1.3E-16 141.1 17.5 160 530-694 9-172 (723)
63 3sf4_A G-protein-signaling mod 99.4 2.5E-12 8.6E-17 134.9 15.5 153 532-684 189-364 (406)
64 4e6h_A MRNA 3'-END-processing 99.4 2.4E-09 8.4E-14 117.1 37.1 413 224-668 65-576 (679)
65 3ulq_A Response regulator aspa 99.4 9.4E-12 3.2E-16 129.4 17.3 223 472-695 111-367 (383)
66 3vtx_A MAMA; tetratricopeptide 99.4 1.6E-11 5.5E-16 112.7 16.2 166 498-667 4-175 (184)
67 4a1s_A PINS, partner of inscut 99.3 1.6E-11 5.5E-16 129.1 16.8 269 364-665 51-375 (411)
68 4e6h_A MRNA 3'-END-processing 99.3 4.5E-09 1.5E-13 115.0 36.1 434 241-698 48-572 (679)
69 2ond_A Cleavage stimulation fa 99.3 4.1E-10 1.4E-14 112.8 25.7 218 446-668 33-276 (308)
70 4i17_A Hypothetical protein; T 99.3 5.1E-11 1.7E-15 113.7 17.7 162 531-695 8-208 (228)
71 2ond_A Cleavage stimulation fa 99.3 1.2E-10 4.2E-15 116.7 21.2 213 481-698 33-272 (308)
72 3nf1_A KLC 1, kinesin light ch 99.3 4.1E-12 1.4E-16 127.8 10.1 235 428-695 28-306 (311)
73 3ulq_A Response regulator aspa 99.3 1.2E-10 4E-15 121.1 20.6 228 436-665 112-371 (383)
74 3ro2_A PINS homolog, G-protein 99.3 6.9E-11 2.4E-15 120.1 18.2 134 532-665 185-335 (338)
75 3as5_A MAMA; tetratricopeptide 99.3 7.5E-11 2.6E-15 108.1 16.8 159 501-695 10-172 (186)
76 4abn_A Tetratricopeptide repea 99.3 5.3E-11 1.8E-15 126.9 17.6 177 515-696 84-287 (474)
77 4i17_A Hypothetical protein; T 99.3 1.7E-10 5.9E-15 110.0 19.0 206 462-679 5-226 (228)
78 3nf1_A KLC 1, kinesin light ch 99.2 2.8E-11 9.7E-16 121.6 11.7 239 394-665 25-310 (311)
79 1hz4_A MALT regulatory protein 99.2 6.4E-09 2.2E-13 107.4 29.1 254 442-695 27-321 (373)
80 3as5_A MAMA; tetratricopeptide 99.2 5.1E-10 1.7E-14 102.4 18.5 168 465-668 9-179 (186)
81 3q15_A PSP28, response regulat 99.2 2.3E-10 8E-15 118.5 17.9 222 473-695 110-364 (378)
82 3q15_A PSP28, response regulat 99.1 5.4E-09 1.8E-13 108.2 24.0 225 436-663 110-366 (378)
83 3qky_A Outer membrane assembly 99.1 1.7E-09 5.7E-14 105.5 18.3 205 498-743 14-248 (261)
84 4gyw_A UDP-N-acetylglucosamine 99.1 3.2E-10 1.1E-14 125.6 13.8 163 498-665 8-177 (723)
85 3edt_B KLC 2, kinesin light ch 99.1 8.3E-10 2.8E-14 108.9 14.5 221 475-695 12-280 (283)
86 1qqe_A Vesicular transport pro 99.1 1.4E-09 4.9E-14 107.8 16.0 187 507-693 45-266 (292)
87 4ga2_A E3 SUMO-protein ligase 99.1 1.5E-10 5.1E-15 101.8 7.3 139 540-682 7-149 (150)
88 1qqe_A Vesicular transport pro 99.1 3.5E-09 1.2E-13 104.9 17.1 171 500-673 78-280 (292)
89 2yhc_A BAMD, UPF0169 lipoprote 99.0 8.6E-09 2.9E-13 97.7 18.6 180 500-699 5-216 (225)
90 1hz4_A MALT regulatory protein 99.0 1.3E-07 4.4E-12 97.6 28.1 158 433-592 141-320 (373)
91 2pzi_A Probable serine/threoni 99.0 4.2E-09 1.5E-13 117.5 17.7 148 475-627 402-560 (681)
92 3qky_A Outer membrane assembly 99.0 5.4E-09 1.8E-13 101.9 16.0 203 462-686 13-251 (261)
93 2fo7_A Synthetic consensus TPR 99.0 7E-09 2.4E-13 88.9 14.4 129 532-695 3-131 (136)
94 3edt_B KLC 2, kinesin light ch 99.0 1.6E-08 5.5E-13 99.5 18.9 200 464-663 43-282 (283)
95 3qou_A Protein YBBN; thioredox 99.0 5.7E-09 2E-13 103.0 15.3 172 517-693 104-281 (287)
96 3mv2_B Coatomer subunit epsilo 99.0 2.1E-07 7.3E-12 90.0 24.2 175 518-697 85-283 (310)
97 4ga2_A E3 SUMO-protein ligase 98.9 1.1E-09 3.6E-14 96.3 6.6 121 572-695 4-128 (150)
98 2fo7_A Synthetic consensus TPR 98.9 3.7E-08 1.3E-12 84.3 16.0 130 501-665 3-135 (136)
99 2r5s_A Uncharacterized protein 98.9 6.1E-09 2.1E-13 94.4 11.4 155 503-694 10-171 (176)
100 3gyz_A Chaperone protein IPGC; 98.9 8.5E-09 2.9E-13 89.9 11.5 102 596-697 30-134 (151)
101 3rjv_A Putative SEL1 repeat pr 98.9 6.1E-08 2.1E-12 90.7 17.7 172 518-698 5-199 (212)
102 3mv2_B Coatomer subunit epsilo 98.9 1.2E-07 3.9E-12 91.9 19.2 179 483-669 85-289 (310)
103 3urz_A Uncharacterized protein 98.9 3E-08 1E-12 92.5 14.6 127 535-666 59-190 (208)
104 2pzi_A Probable serine/threoni 98.9 4.1E-08 1.4E-12 109.5 18.1 167 510-682 402-583 (681)
105 2vsy_A XCC0866; transferase, g 98.9 1.9E-08 6.4E-13 110.3 15.0 159 512-674 2-169 (568)
106 4gco_A Protein STI-1; structur 98.8 2.2E-08 7.4E-13 84.7 11.4 114 561-676 8-124 (126)
107 2uy1_A Cleavage stimulation fa 98.8 6.8E-06 2.3E-10 87.2 32.7 204 445-661 195-412 (493)
108 2ifu_A Gamma-SNAP; membrane fu 98.8 1.2E-07 4E-12 94.7 17.8 220 442-689 4-254 (307)
109 2vgx_A Chaperone SYCD; alterna 98.8 9E-09 3.1E-13 90.0 8.4 96 601-696 21-118 (148)
110 3dra_A Protein farnesyltransfe 98.8 7.1E-07 2.4E-11 87.4 22.3 209 482-695 51-286 (306)
111 2vsy_A XCC0866; transferase, g 98.8 5.9E-08 2E-12 106.4 16.2 145 478-627 3-154 (568)
112 3urz_A Uncharacterized protein 98.8 6E-08 2E-12 90.5 13.6 157 534-695 8-185 (208)
113 4gco_A Protein STI-1; structur 98.8 6.3E-08 2.2E-12 81.7 12.3 99 597-695 8-109 (126)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.5E-07 5.1E-12 88.2 15.0 129 531-665 7-153 (213)
115 3u3w_A Transcriptional activat 98.7 9.3E-07 3.2E-11 87.5 21.5 158 536-694 81-264 (293)
116 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.9E-07 6.6E-12 88.3 15.8 185 464-669 4-220 (225)
117 2r5s_A Uncharacterized protein 98.7 1.3E-07 4.4E-12 85.6 13.4 155 466-626 8-169 (176)
118 2xcb_A PCRH, regulatory protei 98.7 8.9E-08 3E-12 83.0 11.8 95 602-696 19-115 (142)
119 2c2l_A CHIP, carboxy terminus 98.7 2.7E-08 9.2E-13 97.8 9.4 190 498-695 3-198 (281)
120 2qfc_A PLCR protein; TPR, HTH, 98.7 2.7E-07 9.3E-12 91.4 16.3 163 532-694 77-264 (293)
121 3qou_A Protein YBBN; thioredox 98.7 1.7E-07 5.7E-12 92.4 14.3 133 563-697 114-249 (287)
122 3dra_A Protein farnesyltransfe 98.7 4.7E-06 1.6E-10 81.6 24.3 229 442-676 46-302 (306)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.7 5.1E-07 1.7E-11 84.5 16.1 128 501-632 8-153 (213)
124 1a17_A Serine/threonine protei 98.7 2.5E-07 8.6E-12 82.5 13.4 126 568-695 16-145 (166)
125 2ifu_A Gamma-SNAP; membrane fu 98.7 2.5E-07 8.4E-12 92.3 14.2 197 476-694 3-222 (307)
126 1na0_A Designed protein CTPR3; 98.6 3.5E-07 1.2E-11 76.8 13.1 113 567-681 11-125 (125)
127 2vyi_A SGTA protein; chaperone 98.6 2.7E-07 9.3E-12 78.2 12.3 116 567-684 14-131 (131)
128 2e2e_A Formate-dependent nitri 98.6 2.4E-07 8.1E-12 83.9 12.5 117 578-696 23-144 (177)
129 1p5q_A FKBP52, FK506-binding p 98.6 3.2E-07 1.1E-11 92.6 14.5 142 530-693 147-291 (336)
130 2lni_A Stress-induced-phosphop 98.6 2.8E-07 9.5E-12 78.6 11.9 114 567-682 18-133 (133)
131 3upv_A Heat shock protein STI1 98.6 2.9E-07 1E-11 77.7 11.6 117 603-739 6-124 (126)
132 4f3v_A ESX-1 secretion system 98.6 8.2E-08 2.8E-12 91.7 8.4 181 511-696 18-237 (282)
133 3rjv_A Putative SEL1 repeat pr 98.6 1.1E-06 3.6E-11 82.2 15.3 173 483-665 5-200 (212)
134 1hxi_A PEX5, peroxisome target 98.6 2.1E-07 7.3E-12 77.8 8.9 94 603-696 19-114 (121)
135 2vgx_A Chaperone SYCD; alterna 98.5 2.8E-07 9.4E-12 80.4 9.5 110 561-672 16-128 (148)
136 3gyz_A Chaperone protein IPGC; 98.5 2.3E-07 7.8E-12 80.8 8.5 99 567-667 38-138 (151)
137 4f3v_A ESX-1 secretion system 98.5 7.9E-07 2.7E-11 84.9 12.5 134 537-675 109-249 (282)
138 2fbn_A 70 kDa peptidylprolyl i 98.5 8.4E-08 2.9E-12 88.7 5.6 170 504-694 9-184 (198)
139 2kck_A TPR repeat; tetratricop 98.5 7.6E-07 2.6E-11 73.0 10.9 98 601-698 6-108 (112)
140 3sz7_A HSC70 cochaperone (SGT) 98.5 1.4E-06 4.8E-11 77.5 13.3 106 566-673 12-119 (164)
141 3gw4_A Uncharacterized protein 98.5 2.5E-06 8.6E-11 78.9 15.6 156 511-695 4-175 (203)
142 3u3w_A Transcriptional activat 98.5 1.7E-05 5.9E-10 78.3 22.2 158 505-662 81-266 (293)
143 2uy1_A Cleavage stimulation fa 98.5 0.00014 4.7E-09 77.2 30.3 100 136-253 6-117 (493)
144 3q49_B STIP1 homology and U bo 98.5 1E-06 3.5E-11 75.6 11.1 97 600-696 8-106 (137)
145 2xcb_A PCRH, regulatory protei 98.4 4.5E-07 1.5E-11 78.5 8.1 108 567-676 20-129 (142)
146 4gcn_A Protein STI-1; structur 98.4 6E-07 2.1E-11 75.8 8.6 93 603-695 10-111 (127)
147 2e2e_A Formate-dependent nitri 98.4 1E-06 3.5E-11 79.6 10.7 128 541-672 21-154 (177)
148 1elw_A TPR1-domain of HOP; HOP 98.4 2.9E-06 9.9E-11 70.2 12.7 105 571-677 10-116 (118)
149 2lni_A Stress-induced-phosphop 98.4 1.9E-06 6.4E-11 73.3 11.4 95 601-695 16-112 (133)
150 1elw_A TPR1-domain of HOP; HOP 98.4 1.6E-06 5.5E-11 71.8 10.5 96 601-696 4-101 (118)
151 3rkv_A Putative peptidylprolyl 98.4 1.4E-06 4.8E-11 77.4 10.7 130 567-743 13-148 (162)
152 3q7a_A Farnesyltransferase alp 98.4 2.2E-05 7.6E-10 77.6 20.0 209 482-695 72-330 (349)
153 2qfc_A PLCR protein; TPR, HTH, 98.4 1.1E-05 3.9E-10 79.6 18.2 162 501-662 77-266 (293)
154 3sz7_A HSC70 cochaperone (SGT) 98.4 2.9E-06 9.8E-11 75.5 12.2 93 531-627 12-105 (164)
155 3upv_A Heat shock protein STI1 98.4 2.8E-06 9.7E-11 71.5 11.2 109 568-678 7-123 (126)
156 2dba_A Smooth muscle cell asso 98.4 5.1E-06 1.8E-10 72.1 13.1 115 529-679 27-145 (148)
157 1na0_A Designed protein CTPR3; 98.4 2.7E-06 9.1E-11 71.2 10.8 96 601-696 9-106 (125)
158 2hr2_A Hypothetical protein; a 98.3 1.4E-06 4.8E-11 74.8 8.5 106 567-695 13-130 (159)
159 2vyi_A SGTA protein; chaperone 98.3 5.3E-06 1.8E-10 70.0 12.4 96 601-696 12-109 (131)
160 3gw4_A Uncharacterized protein 98.3 1.5E-05 5.2E-10 73.5 16.3 128 499-626 26-172 (203)
161 2dba_A Smooth muscle cell asso 98.3 3.8E-06 1.3E-10 72.9 11.4 95 601-695 28-127 (148)
162 1wao_1 Serine/threonine protei 98.3 1.2E-06 3.9E-11 93.0 8.9 116 575-692 16-135 (477)
163 3q7a_A Farnesyltransferase alp 98.3 0.00022 7.6E-09 70.4 24.3 229 442-676 67-346 (349)
164 2fbn_A 70 kDa peptidylprolyl i 98.3 8.4E-07 2.9E-11 81.9 6.7 62 634-695 89-150 (198)
165 2xev_A YBGF; tetratricopeptide 98.3 3.9E-06 1.3E-10 70.9 10.3 91 605-695 6-104 (129)
166 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 6.4E-06 2.2E-10 86.9 14.0 143 530-694 268-413 (457)
167 1wao_1 Serine/threonine protei 98.3 4.5E-06 1.6E-10 88.5 12.4 114 540-657 16-134 (477)
168 1a17_A Serine/threonine protei 98.3 1E-05 3.5E-10 71.8 12.8 126 532-661 15-145 (166)
169 3q49_B STIP1 homology and U bo 98.2 5.4E-06 1.8E-10 70.9 10.5 109 566-676 10-125 (137)
170 1elr_A TPR2A-domain of HOP; HO 98.2 7.8E-06 2.7E-10 69.0 10.7 93 603-695 6-107 (131)
171 3k9i_A BH0479 protein; putativ 98.2 9.9E-07 3.4E-11 73.3 4.7 82 614-695 3-89 (117)
172 3dss_A Geranylgeranyl transfer 98.2 0.00018 6.2E-09 70.7 21.3 178 515-695 90-303 (331)
173 1p5q_A FKBP52, FK506-binding p 98.2 7.5E-06 2.6E-10 82.5 11.5 112 566-696 148-259 (336)
174 1dce_A Protein (RAB geranylger 98.2 3.9E-05 1.3E-09 82.8 17.7 168 514-685 44-244 (567)
175 2c2l_A CHIP, carboxy terminus 98.2 9.8E-06 3.3E-10 79.3 11.4 112 564-677 3-116 (281)
176 2hr2_A Hypothetical protein; a 98.2 8.2E-06 2.8E-10 70.0 9.3 112 532-674 13-143 (159)
177 3dss_A Geranylgeranyl transfer 98.2 0.00032 1.1E-08 69.0 22.0 224 446-677 47-319 (331)
178 1ihg_A Cyclophilin 40; ppiase 98.1 8.1E-06 2.8E-10 83.2 11.0 137 531-689 224-363 (370)
179 2kck_A TPR repeat; tetratricop 98.1 1.3E-05 4.4E-10 65.4 10.3 98 568-667 9-111 (112)
180 4gcn_A Protein STI-1; structur 98.1 2E-05 6.9E-10 66.3 11.6 61 531-593 9-70 (127)
181 1elr_A TPR2A-domain of HOP; HO 98.1 1.8E-05 6E-10 66.8 11.4 114 532-679 6-124 (131)
182 2if4_A ATFKBP42; FKBP-like, al 98.1 7.2E-06 2.5E-10 82.7 10.2 145 532-696 181-328 (338)
183 1hxi_A PEX5, peroxisome target 98.1 1E-05 3.5E-10 67.4 9.4 96 570-667 22-119 (121)
184 4b4t_Q 26S proteasome regulato 98.1 1.3E-05 4.6E-10 84.2 12.2 163 532-694 57-243 (434)
185 3ro3_A PINS homolog, G-protein 98.1 1.6E-05 5.4E-10 70.1 10.9 135 532-695 11-157 (164)
186 2xev_A YBGF; tetratricopeptide 98.1 3.9E-05 1.3E-09 64.6 12.8 103 573-677 10-120 (129)
187 3n71_A Histone lysine methyltr 98.1 1.5E-05 5E-10 83.9 12.0 97 603-699 353-467 (490)
188 2l6j_A TPR repeat-containing p 98.1 1.4E-06 4.9E-11 71.4 3.0 92 601-692 4-103 (111)
189 3rkv_A Putative peptidylprolyl 98.1 8.4E-06 2.9E-10 72.2 8.0 124 530-678 11-143 (162)
190 3k9i_A BH0479 protein; putativ 98.0 3.3E-06 1.1E-10 70.0 4.3 92 579-671 4-99 (117)
191 3ma5_A Tetratricopeptide repea 98.0 1.9E-05 6.4E-10 63.2 8.6 65 631-695 5-69 (100)
192 1ihg_A Cyclophilin 40; ppiase 98.0 2.2E-05 7.5E-10 80.0 11.1 112 565-695 223-335 (370)
193 3ro3_A PINS homolog, G-protein 98.0 2.6E-05 8.9E-10 68.6 10.1 95 499-593 9-117 (164)
194 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 5.1E-05 1.7E-09 80.0 13.4 131 545-696 249-380 (457)
195 4b4t_Q 26S proteasome regulato 97.9 0.00012 4.2E-09 76.7 15.3 158 538-695 12-203 (434)
196 1na3_A Designed protein CTPR2; 97.9 4.1E-05 1.4E-09 59.7 8.7 80 602-681 10-91 (91)
197 2kat_A Uncharacterized protein 97.9 2.5E-05 8.6E-10 64.3 7.4 77 619-695 3-81 (115)
198 3bee_A Putative YFRE protein; 97.9 6.3E-05 2.1E-09 58.7 9.2 69 630-698 3-74 (93)
199 1zu2_A Mitochondrial import re 97.9 8.3E-06 2.8E-10 69.9 4.2 85 613-697 14-121 (158)
200 3n71_A Histone lysine methyltr 97.9 2.2E-05 7.5E-10 82.5 8.1 114 611-742 319-450 (490)
201 2if4_A ATFKBP42; FKBP-like, al 97.8 2.6E-05 8.9E-10 78.5 7.2 114 565-695 179-292 (338)
202 1klx_A Cysteine rich protein B 97.7 0.00021 7.3E-09 60.9 11.0 111 580-698 10-128 (138)
203 3qwp_A SET and MYND domain-con 97.7 5.2E-05 1.8E-09 78.5 7.8 91 633-741 329-427 (429)
204 1dce_A Protein (RAB geranylger 97.7 0.00056 1.9E-08 73.8 15.3 148 544-695 43-220 (567)
205 2l6j_A TPR repeat-containing p 97.7 0.00013 4.3E-09 59.4 8.0 66 631-696 2-67 (111)
206 3qww_A SET and MYND domain-con 97.5 6.6E-05 2.3E-09 77.5 5.4 85 633-735 340-432 (433)
207 1zu2_A Mitochondrial import re 97.5 8.2E-05 2.8E-09 63.7 4.9 101 541-669 13-127 (158)
208 1na3_A Designed protein CTPR2; 97.5 0.00031 1.1E-08 54.4 7.5 64 632-695 8-71 (91)
209 1klx_A Cysteine rich protein B 97.4 0.0013 4.5E-08 55.9 10.9 112 544-664 9-128 (138)
210 2kat_A Uncharacterized protein 97.4 0.00028 9.6E-09 57.9 6.3 64 602-665 20-85 (115)
211 2kc7_A BFR218_protein; tetratr 97.1 0.0018 6.2E-08 51.1 8.3 78 607-692 6-86 (99)
212 3ly7_A Transcriptional activat 97.1 0.0056 1.9E-07 60.3 12.8 141 528-696 192-339 (372)
213 3ma5_A Tetratricopeptide repea 97.1 0.0019 6.4E-08 51.2 7.9 63 529-593 6-69 (100)
214 2kc7_A BFR218_protein; tetratr 97.1 0.0011 3.6E-08 52.4 6.5 58 639-696 6-64 (99)
215 3qww_A SET and MYND domain-con 97.1 0.0026 9E-08 65.5 11.0 99 542-669 310-423 (433)
216 1pc2_A Mitochondria fission pr 97.0 0.0039 1.3E-07 52.7 9.5 65 631-695 30-99 (152)
217 3qwp_A SET and MYND domain-con 96.9 0.0045 1.5E-07 63.9 11.6 106 537-671 294-414 (429)
218 3ly7_A Transcriptional activat 96.9 0.0064 2.2E-07 59.9 12.0 40 658-697 268-307 (372)
219 3lvg_A Clathrin heavy chain 1; 96.8 0.00034 1.2E-08 70.1 1.7 431 92-587 53-534 (624)
220 3mkq_A Coatomer beta'-subunit; 96.6 0.13 4.5E-06 58.5 22.0 130 468-627 633-762 (814)
221 2v5f_A Prolyl 4-hydroxylase su 96.6 0.0091 3.1E-07 47.5 8.5 44 631-674 44-87 (104)
222 3mkq_A Coatomer beta'-subunit; 96.5 0.052 1.8E-06 61.9 17.3 166 407-628 610-776 (814)
223 3u64_A Protein TP_0956; tetrat 96.5 0.0076 2.6E-07 56.8 8.2 71 633-703 199-276 (301)
224 1wy6_A Hypothetical protein ST 96.4 0.24 8.2E-06 40.1 15.3 140 541-699 18-157 (172)
225 3bee_A Putative YFRE protein; 96.0 0.036 1.2E-06 42.8 8.5 69 598-666 3-76 (93)
226 3u64_A Protein TP_0956; tetrat 95.9 0.24 8.4E-06 46.7 15.2 111 512-627 134-266 (301)
227 3mkq_B Coatomer subunit alpha; 95.9 0.79 2.7E-05 39.7 17.2 129 507-659 13-141 (177)
228 1qsa_A Protein (soluble lytic 95.8 2.7 9.1E-05 45.2 27.4 113 545-661 229-347 (618)
229 1pc2_A Mitochondria fission pr 95.7 0.036 1.2E-06 46.7 8.1 41 633-673 71-111 (152)
230 4gns_B Protein CSD3, chitin bi 95.4 0.04 1.4E-06 60.2 9.1 59 636-694 340-398 (754)
231 3lvg_A Clathrin heavy chain 1; 95.3 0.0057 1.9E-07 61.5 2.1 238 193-450 53-325 (624)
232 1nzn_A CGI-135 protein, fissio 95.2 0.077 2.6E-06 43.0 8.1 69 599-667 33-108 (126)
233 1y8m_A FIS1; mitochondria, unk 94.9 0.59 2E-05 38.5 12.4 66 630-695 36-105 (144)
234 3mkq_B Coatomer subunit alpha; 94.7 0.8 2.7E-05 39.7 13.4 100 305-421 15-114 (177)
235 2v5f_A Prolyl 4-hydroxylase su 94.2 0.15 5.1E-06 40.3 7.5 64 632-695 4-74 (104)
236 1nzn_A CGI-135 protein, fissio 94.0 0.51 1.8E-05 38.2 10.0 85 544-631 15-105 (126)
237 4h7y_A Dual specificity protei 93.3 0.51 1.8E-05 39.2 8.9 54 615-668 74-129 (161)
238 4ady_A RPN2, 26S proteasome re 92.8 15 0.00052 41.2 29.9 263 304-576 383-672 (963)
239 3o48_A Mitochondria fission 1 92.4 0.61 2.1E-05 37.9 8.2 65 631-695 38-106 (134)
240 2wpv_A GET4, UPF0363 protein Y 92.1 8.8 0.0003 36.9 17.4 169 195-389 34-216 (312)
241 3ffl_A Anaphase-promoting comp 90.5 1.5 5.2E-05 37.2 9.1 112 506-631 27-152 (167)
242 4b4t_P 26S proteasome regulato 90.4 17 0.00059 37.2 20.1 50 138-187 30-84 (445)
243 4h7y_A Dual specificity protei 90.3 0.51 1.7E-05 39.2 5.8 108 564-699 12-126 (161)
244 1wy6_A Hypothetical protein ST 90.2 6.6 0.00022 32.0 13.5 137 442-597 20-156 (172)
245 2wpv_A GET4, UPF0363 protein Y 89.8 15 0.0005 35.4 19.8 109 301-420 39-158 (312)
246 3ffl_A Anaphase-promoting comp 89.3 2.6 8.8E-05 35.8 9.5 120 560-693 13-148 (167)
247 4ady_A RPN2, 26S proteasome re 88.8 34 0.0012 38.4 31.3 250 403-660 381-656 (963)
248 2ff4_A Probable regulatory pro 88.2 1 3.6E-05 45.5 7.8 60 636-695 174-233 (388)
249 3lpz_A GET4 (YOR164C homolog); 87.2 22 0.00076 34.4 20.2 168 196-389 37-215 (336)
250 2qx5_A Nucleoporin NIC96; mRNA 87.1 36 0.0012 36.6 21.3 18 677-694 548-565 (661)
251 3txn_A 26S proteasome regulato 87.1 22 0.00076 35.5 16.4 128 466-593 21-167 (394)
252 4b4t_P 26S proteasome regulato 85.6 34 0.0012 35.0 23.2 186 442-627 29-244 (445)
253 3lpz_A GET4 (YOR164C homolog); 85.6 27 0.00093 33.8 20.5 134 95-239 37-181 (336)
254 2ff4_A Probable regulatory pro 85.1 5.2 0.00018 40.3 11.0 70 534-605 175-249 (388)
255 1y8m_A FIS1; mitochondria, unk 85.0 15 0.0005 30.3 11.3 39 634-672 78-116 (144)
256 1v54_E Cytochrome C oxidase po 85.0 5.6 0.00019 30.3 8.0 63 139-202 25-87 (109)
257 4gns_B Protein CSD3, chitin bi 84.8 16 0.00056 40.0 15.2 51 539-591 346-397 (754)
258 3o48_A Mitochondria fission 1 84.1 3.2 0.00011 33.7 7.0 39 633-671 78-116 (134)
259 1v54_E Cytochrome C oxidase po 81.2 11 0.00039 28.7 8.4 62 546-609 26-87 (109)
260 2uwj_G Type III export protein 80.5 16 0.00053 27.8 8.8 78 174-255 21-98 (115)
261 2p58_C Putative type III secre 80.2 16 0.00056 27.7 8.8 78 174-255 22-99 (116)
262 1wdy_A 2-5A-dependent ribonucl 80.0 19 0.00064 33.9 12.6 49 271-319 190-240 (285)
263 2p58_C Putative type III secre 79.9 15 0.0005 28.0 8.5 78 275-356 22-99 (116)
264 1wdy_A 2-5A-dependent ribonucl 79.1 33 0.0011 32.1 14.0 15 380-394 198-212 (285)
265 2uwj_G Type III export protein 78.3 14 0.00048 28.0 7.9 78 275-356 21-98 (115)
266 4fhn_B Nucleoporin NUP120; pro 78.2 18 0.00062 42.5 13.7 164 96-277 815-988 (1139)
267 1zbp_A Hypothetical protein VP 77.3 4.2 0.00014 37.8 6.2 58 609-666 5-64 (273)
268 1zbp_A Hypothetical protein VP 76.3 18 0.00062 33.5 10.1 118 539-668 6-135 (273)
269 2y69_E Cytochrome C oxidase su 76.2 14 0.00048 29.9 8.0 63 139-202 68-130 (152)
270 4fhn_B Nucleoporin NUP120; pro 75.8 27 0.00094 40.9 14.3 21 571-591 848-868 (1139)
271 2qx5_A Nucleoporin NIC96; mRNA 71.4 96 0.0033 33.4 15.8 20 612-631 549-568 (661)
272 2y69_E Cytochrome C oxidase su 70.9 24 0.0008 28.7 8.1 60 548-609 71-130 (152)
273 4b4t_R RPN7, 26S proteasome re 70.1 34 0.0012 34.8 11.8 94 501-594 133-237 (429)
274 3kea_A K1L; tropism, ANK repea 65.7 38 0.0013 32.0 10.7 14 104-117 39-52 (285)
275 1k1a_A B-cell lymphoma 3-encod 63.1 58 0.002 29.4 11.2 26 133-158 15-40 (241)
276 3ltm_A Alpha-REP4; protein eng 60.3 90 0.0031 27.5 17.0 49 91-139 31-79 (211)
277 3ltm_A Alpha-REP4; protein eng 60.1 91 0.0031 27.5 17.4 49 192-240 31-79 (211)
278 1n11_A Ankyrin; clathrin, BAND 60.0 1.5E+02 0.005 29.9 15.1 19 302-320 216-234 (437)
279 4b4t_R RPN7, 26S proteasome re 59.2 35 0.0012 34.7 9.4 60 567-627 133-194 (429)
280 1k1a_A B-cell lymphoma 3-encod 58.4 42 0.0014 30.4 9.3 18 100-117 13-30 (241)
281 3hra_A Ankyrin repeat family p 57.5 68 0.0023 27.9 10.3 110 204-321 12-129 (201)
282 3esl_A Checkpoint serine/threo 56.9 92 0.0031 27.4 10.1 47 647-693 93-141 (202)
283 3kea_A K1L; tropism, ANK repea 56.5 42 0.0014 31.7 9.1 17 347-363 209-225 (285)
284 1n11_A Ankyrin; clathrin, BAND 55.3 1.7E+02 0.006 29.3 15.2 18 303-320 118-135 (437)
285 3jxi_A Vanilloid receptor-rela 53.3 44 0.0015 30.8 8.6 53 133-185 11-72 (260)
286 3eu9_A Huntingtin-interacting 50.8 66 0.0022 28.9 9.3 41 79-119 23-65 (240)
287 3jxi_A Vanilloid receptor-rela 50.0 38 0.0013 31.3 7.5 92 232-323 9-118 (260)
288 2nsz_A Programmed cell death p 48.3 94 0.0032 25.1 8.5 63 298-360 10-77 (129)
289 2zu6_B Programmed cell death p 44.2 1.5E+02 0.0051 28.3 10.5 204 197-402 6-243 (307)
290 3ljn_A Hypothetical protein; a 43.9 56 0.0019 32.1 8.0 81 66-150 25-107 (364)
291 3ltj_A Alpharep-4; protein eng 43.8 1.6E+02 0.0055 25.5 19.2 142 191-340 25-166 (201)
292 3eu9_A Huntingtin-interacting 42.4 1.4E+02 0.0049 26.5 10.2 16 203-218 48-63 (240)
293 3ltj_A Alpharep-4; protein eng 42.1 1.7E+02 0.0058 25.3 18.4 49 91-139 26-74 (201)
294 2zu6_B Programmed cell death p 40.9 2.4E+02 0.0084 26.8 11.9 198 298-499 6-237 (307)
295 2rfa_A Transient receptor pote 40.8 1.8E+02 0.0061 25.8 10.5 17 203-219 9-25 (232)
296 3hra_A Ankyrin repeat family p 40.1 1.4E+02 0.0047 25.7 9.4 150 233-395 10-172 (201)
297 1ya0_A SMG-7 transcript varian 39.8 61 0.0021 33.6 7.5 48 640-687 159-206 (497)
298 4b4t_S RPN3, 26S proteasome re 39.4 70 0.0024 33.0 7.7 58 566-627 232-296 (523)
299 2dl1_A Spartin; SPG20, MIT, st 39.0 1.3E+02 0.0045 23.6 7.3 35 652-695 48-82 (116)
300 2ion_A PDCD4, programmed cell 38.8 97 0.0033 25.9 7.3 63 298-360 12-79 (152)
301 3aji_A 26S proteasome non-ATPa 36.8 2.2E+02 0.0075 25.1 10.6 15 204-218 13-27 (231)
302 3d9h_A CDNA FLJ77766, highly s 36.4 1E+02 0.0034 28.9 8.1 19 96-114 15-33 (285)
303 2r9g_A AAA ATPase, central reg 36.3 2.2E+02 0.0075 24.9 9.2 44 536-580 17-63 (204)
304 2rfa_A Transient receptor pote 35.9 1.5E+02 0.0051 26.3 9.1 25 267-291 158-182 (232)
305 3ljn_A Hypothetical protein; a 35.0 94 0.0032 30.4 8.0 13 408-420 182-194 (364)
306 3esl_A Checkpoint serine/threo 34.6 2.4E+02 0.0081 24.8 11.0 55 544-599 93-148 (202)
307 2d2s_A Exocyst complex compone 34.3 1.2E+02 0.0043 27.5 7.8 21 232-252 25-45 (235)
308 4a1g_A Mitotic checkpoint seri 34.1 2E+02 0.007 23.9 9.2 45 652-696 84-130 (152)
309 3b7b_A Euchromatic histone-lys 33.2 1.4E+02 0.0047 26.7 8.4 41 79-119 25-67 (237)
310 3bqo_A Telomeric repeat-bindin 32.9 2.3E+02 0.0078 24.7 8.5 71 617-687 94-171 (211)
311 2d2s_A Exocyst complex compone 31.6 2.6E+02 0.0088 25.4 9.5 28 497-524 89-116 (235)
312 3qye_A TBC1 domain family memb 30.3 2.4E+02 0.0083 27.1 9.9 75 347-421 209-287 (331)
313 2fu4_A Ferric uptake regulatio 30.1 1.5E+02 0.0052 21.2 6.5 62 148-210 6-68 (83)
314 2wvi_A Mitotic checkpoint seri 30.0 2.5E+02 0.0086 23.7 9.2 45 652-696 79-125 (164)
315 3b7b_A Euchromatic histone-lys 29.6 2E+02 0.0069 25.5 8.9 21 369-389 215-235 (237)
316 3twe_A Alpha4H; unknown functi 27.1 72 0.0025 16.5 2.8 17 726-742 3-19 (27)
317 3aji_A 26S proteasome non-ATPa 26.5 2.2E+02 0.0076 25.1 8.5 85 231-320 9-95 (231)
318 3eiq_C Programmed cell death p 26.4 4.6E+02 0.016 25.5 17.3 63 502-564 220-287 (358)
319 4gq2_M Nucleoporin NUP120; bet 26.1 3.6E+02 0.012 30.6 11.6 128 536-680 816-949 (950)
320 2pnn_A Transient receptor pote 25.3 1.5E+02 0.0053 27.2 7.3 86 235-321 20-124 (273)
321 2etb_A Transient receptor pote 25.2 2.2E+02 0.0075 25.7 8.3 89 232-322 6-114 (256)
322 3bu8_A Telomeric repeat-bindin 25.1 1.8E+02 0.0062 25.8 6.6 47 581-627 88-140 (235)
323 2pnn_A Transient receptor pote 24.5 1.6E+02 0.0053 27.2 7.2 15 205-219 109-123 (273)
324 3utm_A Tankyrase-1; tankyrase, 24.2 4.6E+02 0.016 24.8 13.5 20 99-118 61-80 (351)
325 1qsa_A Protein (soluble lytic 24.0 6.7E+02 0.023 26.6 40.5 364 300-687 77-470 (618)
326 3t8k_A Uncharacterized protein 23.9 3.4E+02 0.012 23.2 9.8 89 306-395 14-108 (186)
327 2fu4_A Ferric uptake regulatio 23.6 2E+02 0.0069 20.5 6.6 60 250-310 7-67 (83)
328 2nsz_A Programmed cell death p 23.6 1.8E+02 0.0061 23.4 6.2 22 432-455 12-33 (129)
329 4g8k_A 2-5A-dependent ribonucl 23.2 4.8E+02 0.016 24.6 15.9 274 96-396 25-329 (337)
330 2fe3_A Peroxide operon regulat 22.8 1.5E+02 0.0051 24.4 5.8 60 251-311 13-72 (145)
331 3ctd_A Putative ATPase, AAA fa 22.3 3.9E+02 0.013 23.6 8.2 46 535-580 37-85 (213)
332 1ug3_A EIF4GI, eukaryotic prot 22.2 5.3E+02 0.018 24.8 10.8 62 400-461 15-78 (339)
333 2pk8_A Uncharacterized protein 21.8 88 0.003 23.1 3.4 24 725-748 14-37 (103)
334 4b4t_S RPN3, 26S proteasome re 21.8 2.3E+02 0.0078 29.3 7.8 66 602-667 232-304 (523)
335 1ug3_A EIF4GI, eukaryotic prot 21.6 1.3E+02 0.0045 29.2 6.0 25 329-353 14-38 (339)
336 3qye_A TBC1 domain family memb 21.6 5.3E+02 0.018 24.6 11.7 42 180-221 209-250 (331)
337 3t8k_A Uncharacterized protein 21.5 3.8E+02 0.013 22.8 9.8 89 205-294 14-108 (186)
338 2ijq_A Hypothetical protein; s 21.4 2.6E+02 0.0087 23.6 6.8 49 613-661 44-103 (161)
339 3bge_A Predicted ATPase; struc 21.2 2.8E+02 0.0097 24.2 7.1 45 536-580 10-57 (201)
340 1wgl_A TOLL-interacting protei 20.8 93 0.0032 21.0 3.2 46 653-699 10-55 (59)
341 3d9h_A CDNA FLJ77766, highly s 20.6 2.1E+02 0.0072 26.6 7.2 21 98-118 61-81 (285)
342 4aez_C MAD3, mitotic spindle c 20.1 4.5E+02 0.016 23.5 8.5 52 547-599 131-183 (223)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-41 Score=375.44 Aligned_cols=499 Identities=8% Similarity=-0.058 Sum_probs=343.6
Q ss_pred HHccCChhHHHHHhccCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHH
Q 004425 103 YAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIH 182 (754)
Q Consensus 103 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 182 (754)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45667778888889999889999999999999999999999999999984 5678899999999999999999999999
Q ss_pred HHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCC-------------------CcchHHHHHHHHHHcCChhH
Q 004425 183 AFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYK-------------------DVRCVNFMILEYNKAGESEM 243 (754)
Q Consensus 183 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 243 (754)
+.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987543 688999999999999999999999999965433 37799999999999999999
Q ss_pred HHHHHHHhHHCCCCCCc-chHHHHHHHHhccCCchH--HHHH-HHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 004425 244 AFHVFVHLLSSDFEPND-YTFTNVISVCYENLGVEE--GKQL-HGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFD 319 (754)
Q Consensus 244 A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 319 (754)
|+++|++|.+.+ |+. ..+..+...+...+..+. +..+ +..+...+..+...+|+.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999998864 443 334444433332222111 1111 4444445555566777888888999999999999999
Q ss_pred ccCC--CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchh
Q 004425 320 AISE--RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVR 397 (754)
Q Consensus 320 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 397 (754)
++.+ ++..+|+.++.+|.+.|++++|+.+|+++.+.+. .+..++..++..+...|++++|..+++.+.+.. +.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 9987 7889999999999999999999999999987642 366778888888888888888888888777543 34455
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 004425 398 LGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQ 477 (754)
Q Consensus 398 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 477 (754)
+++.++.+|.++|++ ++|.++|+++.+. .|+
T Consensus 375 ~~~~l~~~~~~~g~~---------------------------------~~A~~~~~~~~~~--~~~-------------- 405 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKI---------------------------------SEARRYFSKSSTM--DPQ-------------- 405 (597)
T ss_dssp HHHHHHHHHHHTTCH---------------------------------HHHHHHHHHHHHH--CTT--------------
T ss_pred HHHHHHHHHHHhccH---------------------------------HHHHHHHHHHHHh--CCC--------------
Confidence 566666666655555 4555555554432 111
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhHHHHHHHHHHHcCChHHHHHHHH
Q 004425 478 ACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGIS---DRDIVSWNAMLSAYALHGLGKGALLLFE 554 (754)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 554 (754)
+..+|+.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+
T Consensus 406 --------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 406 --------------------FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 12222333333333333333333333321 1234455555555555566666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---CCCCC--ccHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 004425 555 EMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIY---GLRPI--LEHFACMVDLLGRAGRLSEAMNLINSS-P 628 (754)
Q Consensus 555 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 628 (754)
++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ .
T Consensus 466 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 466 SSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 665532 1134556666666666666666666666665521 44555 456677777777777777777777654 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 629 F-SESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 629 ~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
. +.++.+|..+..+|...|++++|...++++++++|+++..+..|+++|..
T Consensus 545 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 545 LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 2 33789999999999999999999999999999999999999999998754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-41 Score=374.94 Aligned_cols=480 Identities=11% Similarity=-0.005 Sum_probs=401.8
Q ss_pred hHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHH
Q 004425 204 YFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLH 283 (754)
Q Consensus 204 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 283 (754)
+.+.|.+..+...|..++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 34567777888888888888999999999999999999999999999985 4678899999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCC-------------------CchhHHHHHHHHHhcCChhH
Q 004425 284 GLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISER-------------------NLISWTALISGYVRSGHGGK 344 (754)
Q Consensus 284 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 344 (754)
+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987543 678999999999999999999999999965433 47899999999999999999
Q ss_pred HHHHHHHhHhcCcccCh-hhHHHHHHHhcccCChHHH--HHH-HHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHh
Q 004425 345 AINGFLEFLDLGICCDS-SCLATVIDGCSVCSNLELG--LQL-HGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLD 420 (754)
Q Consensus 345 A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a--~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 420 (754)
|++.|++|.+.+ |+. ..+..+...+...+..+.+ ..+ +..+...+..+...+|+.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999998853 443 3444444444433322221 111 4455555556666778888999999999999999999
Q ss_pred cCCC--CChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCc
Q 004425 421 GFSC--KYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAAD 498 (754)
Q Consensus 421 ~~~~--~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 498 (754)
++.. ++..+|+.++.+|.+ .|++++|+++|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFV--RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HhhcCCchHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 9986 889999999999999 999999999999999875 3366789999999999999999999999999764 567
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004425 499 VIVGNALITMYAKCGSIDGAFQIFKGIS---DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQAC 575 (754)
Q Consensus 499 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 575 (754)
..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 8899999999999999999999999875 3567899999999999999999999999999843 23668999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhc
Q 004425 576 IYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-------PFSES--PLLWRTLVSVSKLM 646 (754)
Q Consensus 576 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~ 646 (754)
.+.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...
T Consensus 452 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 9999999999999999873 3446789999999999999999999999876 45776 88999999999999
Q ss_pred CChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 647 ANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 647 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
|++++|+..++++++++|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998764
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.5e-28 Score=261.28 Aligned_cols=210 Identities=13% Similarity=0.120 Sum_probs=144.7
Q ss_pred hHHHHHHHHHHhCCCCCCh-hhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhcc
Q 004425 141 ESVLGIACDMYRSEEKFNE-HTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRG 219 (754)
Q Consensus 141 ~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 219 (754)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 3455666777777776554 357888999999999999999999999999999999999999999887764432
Q ss_pred CCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHH
Q 004425 220 LAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGN 299 (754)
Q Consensus 220 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 299 (754)
.+.+..++|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 2344578899999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHhcCChHHHHHHHHccCC----CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhc
Q 004425 300 AIVTMYGKHGMSEEAERMFDAISE----RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCS 372 (754)
Q Consensus 300 ~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 372 (754)
+||.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 877777777666666666555532 4444555555555555555555555555555555555555554444443
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.5e-28 Score=258.55 Aligned_cols=185 Identities=14% Similarity=0.127 Sum_probs=170.5
Q ss_pred hhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCC---------hHHHHHHHHHHHHHCCCCcH
Q 004425 124 AITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLED---------RIFGEQIHAFAIKSGFENNV 194 (754)
Q Consensus 124 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~m~~~g~~~~~ 194 (754)
...++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346888999999999999999999999999999999999999999987654 67899999999999999999
Q ss_pred HHHHHHHHHhHhcCCHhHHHHHhccCC----CCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 004425 195 FVGTSLISMYFHSGCFREAENVFRGLA----YKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVC 270 (754)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 270 (754)
.+||+||++|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999886 4688899999999999999999999999999999999999999999999
Q ss_pred hccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 004425 271 YENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKH 308 (754)
Q Consensus 271 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 308 (754)
++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999888763
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.1e-25 Score=233.78 Aligned_cols=372 Identities=12% Similarity=0.048 Sum_probs=266.7
Q ss_pred HHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC---CCchhHHHHHHHHHhcCChh
Q 004425 267 ISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE---RNLISWTALISGYVRSGHGG 343 (754)
Q Consensus 267 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 343 (754)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++.... .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 344556677777777776666543 33344555555666666666666666655432 24456666666666666666
Q ss_pred HHHHHHHHhHhcCcccCh-hhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcC
Q 004425 344 KAINGFLEFLDLGICCDS-SCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGF 422 (754)
Q Consensus 344 ~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 422 (754)
+|+..|+++.+. .|+. .++..+...+...|+++.|...+..+.+..
T Consensus 85 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------------------- 131 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN------------------------------- 131 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------------
Confidence 666666666553 2332 244555555555555555555555554432
Q ss_pred CCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhH
Q 004425 423 SCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPD-PVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIV 501 (754)
Q Consensus 423 ~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 501 (754)
+.+...+..+...+.. .|++++|.+.|+++.+. .|+ ..+|..+...+...|++++|...++++.+.+ +.+...
T Consensus 132 -p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T 1w3b_A 132 -PDLYCVRSDLGNLLKA--LGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp -TTCTHHHHHHHHHHHT--TSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred -CCcHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 1222334444445555 66666667767666654 333 4566677777777777777777777777654 345667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 004425 502 GNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIY 577 (754)
Q Consensus 502 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 577 (754)
+..+...+...|++++|...|++..+ .+..+|..+..+|...|++++|+..|+++.+ ..|+ ..++..+..++.+
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHH
Confidence 77788888888888888888887642 3567888999999999999999999999998 5565 4688899999999
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 004425 578 SGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILA 655 (754)
Q Consensus 578 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 655 (754)
.|++++|...|+++.+. .+.+...+..++.++.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...
T Consensus 284 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999873 4556788999999999999999999999876 4445 588999999999999999999999
Q ss_pred HHHhhccCCCCcchHHHHHHHHHhcCC
Q 004425 656 SKRLLDLEPKDAGSFILVSNMYAGQGM 682 (754)
Q Consensus 656 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 682 (754)
++++++++|+++.+|..++.+|...|+
T Consensus 362 ~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999988774
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=6.8e-25 Score=229.94 Aligned_cols=351 Identities=14% Similarity=0.113 Sum_probs=293.2
Q ss_pred HHHHHhcCChhHHHHHHHHhHhcCcccChh-hHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCC
Q 004425 333 ISGYVRSGHGGKAINGFLEFLDLGICCDSS-CLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGD 411 (754)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 411 (754)
...+.+.|++++|++.+.++.+. .|+.. .+..+...+...|+++.|...++..++.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34556677777777777776654 34433 34444555667778888888777777653 4566778888888888888
Q ss_pred HHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcccchHHHHHHH
Q 004425 412 LKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP-VTFSRLLSLSASQACLVRGRSLH 487 (754)
Q Consensus 412 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~ 487 (754)
+++|...|+++. +.+...|..+...+.. .|++++|+..|+++.+. .|+. ..+..+...+...|++++|...+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVA--AGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 888888888764 4455678888889999 99999999999999876 5665 45677788889999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 004425 488 AYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD 564 (754)
Q Consensus 488 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 564 (754)
.++.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+ +.|+
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~ 235 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPN 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcC
Confidence 9999874 44678899999999999999999999998853 3567899999999999999999999999998 5565
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 004425 565 -DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS--PFSESPLLWRTLVS 641 (754)
Q Consensus 565 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~ 641 (754)
..++..+..++...|++++|...|+++.+ -.+.+...|..++.+|.+.|++++|++.++++ ..+++..+|..+..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 56889999999999999999999999977 22334678999999999999999999999876 23347899999999
Q ss_pred HHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 642 VSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 642 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.+...|++++|...+++++++.|+++..+..++.+|...|++++|...++++.+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998865
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.2e-22 Score=219.49 Aligned_cols=437 Identities=10% Similarity=-0.048 Sum_probs=213.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004425 227 CVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYG 306 (754)
Q Consensus 227 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 306 (754)
.|......+.+.|++++|+..|+++.+.+ |+..++..+..++...|++++|.+.++.+++.. +.+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34445566667777777777777776653 566677777777777777777777777776654 334556666677777
Q ss_pred hcCChHHHHHHHHccCC---CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHH
Q 004425 307 KHGMSEEAERMFDAISE---RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQL 383 (754)
Q Consensus 307 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 383 (754)
+.|++++|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 77777777777666542 222333333333333222222222222222221112111111100000000000000000
Q ss_pred HHHHHHhCC---------CcchhHHHHHHHHHHh---CCCHHHHHHHHhcCCC-----------------CChhhHHHHH
Q 004425 384 HGFAIKHGY---------LSDVRLGTALVDIYAK---GGDLKSARMLLDGFSC-----------------KYTAEFNAIL 434 (754)
Q Consensus 384 ~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----------------~~~~~~~~li 434 (754)
...+..... +.+...+..+...+.. .|++++|...|+++.. .+...|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 000000000 1112222222222222 4555555555443322 0122344445
Q ss_pred HHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 004425 435 SGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGS 514 (754)
Q Consensus 435 ~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 514 (754)
..+.. .|++++|+..|+++.+.. |+...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|+
T Consensus 245 ~~~~~--~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 245 IFKFL--KNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHH--SSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHH--CCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 55555 566666666666655542 334455555555666666666666666655543 2344555556666666666
Q ss_pred HHHHHHHHhccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004425 515 IDGAFQIFKGIS---DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNE 590 (754)
Q Consensus 515 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 590 (754)
+++|...|+.+. ..+...|..+...|...|++++|+..++++.+. .| +...+..+...+...|++++|..++++
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666665542 123445555666666666666666666666552 23 234555555566666666666666666
Q ss_pred HHHHhCCCCC----ccHHHHHHHHHhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Q 004425 591 IEQIYGLRPI----LEHFACMVDLLGR---AGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLD 661 (754)
Q Consensus 591 ~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 661 (754)
+.+...-.++ ...+..++.++.+ .|++++|.+.++++ ...| +..+|..+...+...|+.++|...++++++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5442211121 2255556666666 66666666665543 1122 455555666666666666666666666666
Q ss_pred cCCCCcchHHHH
Q 004425 662 LEPKDAGSFILV 673 (754)
Q Consensus 662 ~~p~~~~~~~~l 673 (754)
++|+++..+..+
T Consensus 478 ~~~~~~~~~~~~ 489 (514)
T 2gw1_A 478 LARTMEEKLQAI 489 (514)
T ss_dssp HCSSHHHHHHHH
T ss_pred hccccHHHHHHH
Confidence 666655554444
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.9e-22 Score=217.58 Aligned_cols=424 Identities=9% Similarity=-0.022 Sum_probs=315.8
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC---CCchhHHHHHHHHHh
Q 004425 262 TFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE---RNLISWTALISGYVR 338 (754)
Q Consensus 262 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 338 (754)
.+......+.+.|++++|...|+.+++.. |+..++..+..+|.+.|++++|...|+++.+ .+..+|..+..+|.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 45566677888999999999999999876 6889999999999999999999999998764 356788999999999
Q ss_pred cCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHH---HHHHHhCCCHHHH
Q 004425 339 SGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTAL---VDIYAKGGDLKSA 415 (754)
Q Consensus 339 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A 415 (754)
.|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+......- ............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999988753 34444445554444333333333333222222111111111000 0001111112222
Q ss_pred HHHHhcCC---------CCC-hhhHHHHHHHHh---hhhcCCHHHHHHHHHHHHH-----cCCCC--------CHHHHHH
Q 004425 416 RMLLDGFS---------CKY-TAEFNAILSGFM---EKIADDEEDVMVLFSQQRL-----AGMEP--------DPVTFSR 469 (754)
Q Consensus 416 ~~~~~~~~---------~~~-~~~~~~li~~~~---~~~~~~~~~A~~~~~~m~~-----~g~~p--------~~~~~~~ 469 (754)
...+.... .++ ...+......+. . .|++++|+..|+++.+ ..-.| +..++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRS--PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCC--TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 22222221 111 223333322222 3 6999999999999987 32122 2356778
Q ss_pred HHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCCh
Q 004425 470 LLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLG 546 (754)
Q Consensus 470 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 546 (754)
+...+...|+++.|...++.+.+..-. ...+..+...|...|++++|...|+.+.+ .+...|..+...|...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 888899999999999999999987633 88889999999999999999999998754 4667899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHH
Q 004425 547 KGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLIN 625 (754)
Q Consensus 547 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 625 (754)
++|+..|+++.+ ..|+ ...+..+...+...|++++|..+++.+.+. .+.+...+..++.+|.+.|++++|.+.++
T Consensus 321 ~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 321 DQAGKDFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp THHHHHHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998 4454 568888999999999999999999999873 33456789999999999999999999998
Q ss_pred hC----CCCCC----HHHHHHHHHHHHh---cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 626 SS----PFSES----PLLWRTLVSVSKL---MANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 626 ~~----~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
++ +..++ ...|..+...+.. .|++++|...++++++.+|+++.++..++.+|...|++++|...+++..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 76 22232 4489999999999 9999999999999999999999999999999999999999999999886
Q ss_pred hC
Q 004425 695 DL 696 (754)
Q Consensus 695 ~~ 696 (754)
+.
T Consensus 477 ~~ 478 (514)
T 2gw1_A 477 DL 478 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.9e-21 Score=206.76 Aligned_cols=335 Identities=10% Similarity=0.004 Sum_probs=252.5
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 004425 325 NLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVD 404 (754)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 404 (754)
+...|..+...+.+.|++++|+..|+++.+. .+.+..++..+...+...|+++.|...++.+.+.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 4567888888888888888888888888764 22356667777777777788888888887777754 234556666666
Q ss_pred HHHhCCCHHHHHHHHhcCCCC---Ch---hhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc
Q 004425 405 IYAKGGDLKSARMLLDGFSCK---YT---AEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQA 478 (754)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 478 (754)
+|.+.|++++|...|+++... +. ..|..++..+.. . .+..+...+...|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~-----------------------~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM--Q-----------------------RLRSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH--H-----------------------HHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH--H-----------------------HHHHHHHHHHHcC
Confidence 666666666666666554321 11 333333332211 0 1122234466778
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004425 479 CLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEE 555 (754)
Q Consensus 479 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 555 (754)
++++|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..++..|...|++++|+..|++
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888887754 45677888899999999999999999988753 5678899999999999999999999999
Q ss_pred HHHcCCCCCHH-HHHHH------------HHHHHhcCCHHHHHHHHHHHHHHhCCCCC-----ccHHHHHHHHHhhcCCH
Q 004425 556 MKREGFAPDDI-SILGV------------LQACIYSGLSEGGICLFNEIEQIYGLRPI-----LEHFACMVDLLGRAGRL 617 (754)
Q Consensus 556 m~~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~ 617 (754)
+.+ ..|+.. .+..+ ..+|.+.|++++|..+|+++.+. .|+ ..++..++.++.+.|++
T Consensus 237 ~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 237 CLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCH
Confidence 997 556654 33333 78899999999999999999773 344 45788999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHH------------HHHHhcC--
Q 004425 618 SEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVS------------NMYAGQG-- 681 (754)
Q Consensus 618 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-- 681 (754)
++|++.++++ ...| +..+|..++.+|...|++++|...++++++++|+++..+..++ +.|...|
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 9999999876 3344 7899999999999999999999999999999999999999999 4566666
Q ss_pred ---CchHHHHHHHH
Q 004425 682 ---MLDEAAKVRTT 692 (754)
Q Consensus 682 ---~~~~a~~~~~~ 692 (754)
+.+++.+.+++
T Consensus 392 ~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 392 RNAKKQEIIKAYRK 405 (450)
T ss_dssp TTCCTTHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 45566666665
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=5.6e-21 Score=209.65 Aligned_cols=420 Identities=13% Similarity=0.009 Sum_probs=238.4
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004425 226 RCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMY 305 (754)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 305 (754)
..|..+...+.+.|++++|++.|+++.+... .+..++..+..++...|++++|.+.++.+++.. +.+..++..+...|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 3456666777788888888888888776532 255667777777778888888888888877764 34566777777788
Q ss_pred HhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcC------cccChhhHHHHHHHhcccCChHH
Q 004425 306 GKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLG------ICCDSSCLATVIDGCSVCSNLEL 379 (754)
Q Consensus 306 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~~ 379 (754)
...|++++|...|+.+. .+....+..+..+...+...+|+..++++.... ..|+...+
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~--------------- 167 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSL--------------- 167 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHH---------------
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHH---------------
Confidence 88888888888876442 222222233444555555567777777765431 12222222
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChh---hHHHHHHHHhhh------hcCCHHHHHH
Q 004425 380 GLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTA---EFNAILSGFMEK------IADDEEDVMV 450 (754)
Q Consensus 380 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~------~~~~~~~A~~ 450 (754)
..+....+.+.+...+......+.. .+..+...+... ..|++++|+.
T Consensus 168 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 168 ------------------------ASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp ------------------------HHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 2222233333333333333322211 111111111110 0235566666
Q ss_pred HHHHHHHcCCCCCH--------HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 004425 451 LFSQQRLAGMEPDP--------VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIF 522 (754)
Q Consensus 451 ~~~~m~~~g~~p~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 522 (754)
+|+++.+. .|+. .++..+...+...|+++.|...++.+.+.. |+...+..+...|...|++++|...|
T Consensus 224 ~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 224 MYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp HHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred HHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHH
Confidence 66666543 3331 134444455556666666666666666543 33555666666666666666666666
Q ss_pred hccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCC
Q 004425 523 KGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLR 598 (754)
Q Consensus 523 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 598 (754)
+.+.+ .+..+|..+...|...|++++|+..|+++.+. .|+ ...+..+...+...|++++|..+++++.+. .+
T Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~ 375 (537)
T 3fp2_A 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FP 375 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 65532 34456666666666666666666666666663 333 345666666666666777777666666552 23
Q ss_pred CCccHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhc----------CChHHHHHHHHHhh
Q 004425 599 PILEHFACMVDLLGRAGRLSEAMNLINSS----PFSE----SPLLWRTLVSVSKLM----------ANSKFSILASKRLL 660 (754)
Q Consensus 599 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~ 660 (754)
.+...+..++.+|...|++++|.+.++++ +..+ ....+..+...+... |++++|...+++++
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 33456666666666667777766666553 1011 122233444555555 77777777777777
Q ss_pred ccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 661 DLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 661 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+.+|+++.++..++.+|...|++++|...+++..+
T Consensus 456 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 456 ELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77777777777777777777777777777776654
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=2.2e-20 Score=199.91 Aligned_cols=347 Identities=11% Similarity=0.014 Sum_probs=267.1
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHccCC---CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHH
Q 004425 292 VREISVGNAIVTMYGKHGMSEEAERMFDAISE---RNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVI 368 (754)
Q Consensus 292 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 368 (754)
+.+...+..+...|.+.|++++|..+|+++.+ .+..+|..+..+|...|++++|+..|+++.+.+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 45678899999999999999999999998864 467899999999999999999999999998864 23467888899
Q ss_pred HHhcccCChHHHHHHHHHHHHhCCCcch---hHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCH
Q 004425 369 DGCSVCSNLELGLQLHGFAIKHGYLSDV---RLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDE 445 (754)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 445 (754)
..+...|+++.|...++.+.+.. +.+. ..+..+...+...+.+ .+...+.. .|++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~-------------------~~a~~~~~--~~~~ 159 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLR-------------------SQALNAFG--SGDY 159 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHH--HTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHH-------------------HHHHHHHH--cCCH
Confidence 99999999999999999998754 2333 5666665554332222 22334445 7888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 004425 446 EDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGI 525 (754)
Q Consensus 446 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 525 (754)
++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888887652 3355677777888888888888888888887653 446777888888888888888888888877
Q ss_pred CC--C-ChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHH
Q 004425 526 SD--R-DIVSWNAM------------LSAYALHGLGKGALLLFEEMKREGFAPD-----DISILGVLQACIYSGLSEGGI 585 (754)
Q Consensus 526 ~~--~-~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~ 585 (754)
.+ | +...+..+ ...+...|++++|+.+|+++.+ +.|+ ...+..+..++.+.|++++|.
T Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 43 3 33444444 7888999999999999999998 4565 336778888999999999999
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHhcC----
Q 004425 586 CLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSV------------SKLMA---- 647 (754)
Q Consensus 586 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~------------~~~~g---- 647 (754)
.+++++.+. .+.+...|..++.+|...|++++|.+.++++ ...| ++..+..+..+ +...|
T Consensus 316 ~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 316 RVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 999998762 2335678889999999999999999999876 4555 57777777633 33334
Q ss_pred -ChHHHHHHHHH-hhccCCCCc
Q 004425 648 -NSKFSILASKR-LLDLEPKDA 667 (754)
Q Consensus 648 -~~~~a~~~~~~-~~~~~p~~~ 667 (754)
+.+++.+.+++ +++.+|++.
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGGGC
T ss_pred CCHHHHHHHHHHHHHHhCCCCC
Confidence 66778888886 788888743
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=1.8e-19 Score=197.71 Aligned_cols=231 Identities=12% Similarity=0.032 Sum_probs=186.9
Q ss_pred HHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 004425 435 SGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGS 514 (754)
Q Consensus 435 ~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 514 (754)
..+.. .|++++|+..|++..+. .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|+
T Consensus 251 ~~~~~--~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 251 IFHFL--KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHH--TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh--cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 34444 78888888888888876 5667788888888999999999999999998865 4467888999999999999
Q ss_pred HHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004425 515 IDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNE 590 (754)
Q Consensus 515 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 590 (754)
+++|...|+++.+ .+...|..+...|...|++++|+..++++.+. .|+ ...+..+...+...|++++|...|++
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999998753 45678999999999999999999999999984 454 46888899999999999999999999
Q ss_pred HHHHhCCCCC----ccHHHHHHHHHhhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 004425 591 IEQIYGLRPI----LEHFACMVDLLGRA----------GRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSIL 654 (754)
Q Consensus 591 ~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 654 (754)
+.+...-.+. ...+..+..+|.+. |++++|.+.++++ ...| +..+|..+...+...|+.++|..
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 8773211121 12245566778888 9999999999876 2234 68899999999999999999999
Q ss_pred HHHHhhccCCCCcchHHH
Q 004425 655 ASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 655 ~~~~~~~~~p~~~~~~~~ 672 (754)
.+++++++.|++......
T Consensus 484 ~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 484 LFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHH
Confidence 999999999997765443
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=8.7e-16 Score=172.32 Aligned_cols=347 Identities=10% Similarity=0.054 Sum_probs=216.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHccCC-CC-----chhHHHHHHH---------------------------HHhcCChhH
Q 004425 298 GNAIVTMYGKHGMSEEAERMFDAISE-RN-----LISWTALISG---------------------------YVRSGHGGK 344 (754)
Q Consensus 298 ~~~li~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~---------------------------~~~~g~~~~ 344 (754)
....++.|...|.+.+|+++++++.- ++ ...-+.++.+ +...|.+++
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEE 1067 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEE 1067 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHH
Confidence 35566789999999999999999863 22 2333334433 444555555
Q ss_pred HHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCC
Q 004425 345 AINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSC 424 (754)
Q Consensus 345 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 424 (754)
|..+|++.. -.....+.++. ..+++++|.++.++. .+..+|..+..++.+.|++++|.+.|.+.
T Consensus 1068 Af~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1068 AFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 555555531 01111111211 344555555555433 23455666666666666666666666443
Q ss_pred CChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHH
Q 004425 425 KYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNA 504 (754)
Q Consensus 425 ~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 504 (754)
.|...|..++..+.+ .|++++|++.|....+.. ++....+.+..+|++.++++....+. + .++...+..
T Consensus 1132 dD~say~eVa~~~~~--lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANT--SGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQ 1200 (1630)
T ss_pred CChHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHH
Confidence 455556666666666 666666666666555432 33222334666666666665433332 1 234444555
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004425 505 LITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGG 584 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 584 (754)
+.+.|...|++++|..+|... ..|..+..+|.+.|++++|++.+++. .+..+|..+..+|...|.+..|
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHH
Confidence 666666667777777776664 35666777777777777777766654 2345666666777777776666
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CChHHHHHHHHHhh
Q 004425 585 ICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLM--ANSKFSILASKRLL 660 (754)
Q Consensus 585 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~ 660 (754)
..+.. ++..+.+.+..++..|.+.|.+++|+.+++.. +..+ ....|.-|...+.+. ++..++.+.|..-.
T Consensus 1270 ~~cgl------~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A 1270 QMCGL------HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred HHHHH------hhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 66543 23345667778899999999999999999755 4444 455666666666554 67778888888888
Q ss_pred ccCC-----CCcchHHHHHHHHHhcCCchHHHH
Q 004425 661 DLEP-----KDAGSFILVSNMYAGQGMLDEAAK 688 (754)
Q Consensus 661 ~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 688 (754)
.+.| +++..|..++.+|.+.|+|+.|..
T Consensus 1344 ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1344 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 7777 677889999999999999998884
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=7.6e-18 Score=173.95 Aligned_cols=322 Identities=13% Similarity=0.049 Sum_probs=213.6
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHh
Q 004425 362 SCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFM 438 (754)
Q Consensus 362 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 438 (754)
..+..+...+...|+++.|...++.+++.. +.+...+..+...|...|++++|...|+++. +.+...|..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 344555556666677777777776666643 2344555666666666666666666665543 234445555555555
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCC---CH-HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 004425 439 EKIADDEEDVMVLFSQQRLAGMEP---DP-VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGS 514 (754)
Q Consensus 439 ~~~~~~~~~A~~~~~~m~~~g~~p---~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 514 (754)
. .|++++|+..|++..+. .| +. ..+..+... .. ...+..+...+...|+
T Consensus 83 ~--~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 83 K--QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp H--HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTC
T ss_pred H--cCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccC
Confidence 5 66666666666665543 33 22 111111100 00 0012223567778888
Q ss_pred HHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004425 515 IDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNE 590 (754)
Q Consensus 515 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 590 (754)
+++|...|+.+.+ .+...|..+...+...|++++|+..++++.+ ..| +..++..+...+...|++++|...|++
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888877642 4566777788888888888888888888887 344 445777788888888888888888888
Q ss_pred HHHHhCCCCC-ccHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCC-CH----HHHHHHHHHHHhcCChHH
Q 004425 591 IEQIYGLRPI-LEHFA------------CMVDLLGRAGRLSEAMNLINSS-PFSE-SP----LLWRTLVSVSKLMANSKF 651 (754)
Q Consensus 591 ~~~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~----~~~~~l~~~~~~~g~~~~ 651 (754)
+.+. .|+ ...+. .++..+.+.|++++|.+.++++ ...| ++ ..+..+...+...|++++
T Consensus 214 a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 214 CLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 8662 233 22222 3367788899999999998865 2233 33 235567788889999999
Q ss_pred HHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHH
Q 004425 652 SILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYS 731 (754)
Q Consensus 652 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (754)
|...++++++.+|+++..+..++.+|...|++++|...+++..+. .|....+..
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------------------------~p~~~~~~~ 344 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------------------------NENDQQIRE 344 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------------------------CTTCHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------CCCChHHHH
Confidence 999999999999999999999999999999999999999987652 344455666
Q ss_pred HHHHHHHHHHH
Q 004425 732 KLDLLNDEMKL 742 (754)
Q Consensus 732 ~l~~l~~~~~~ 742 (754)
.|..+...+++
T Consensus 345 ~l~~~~~~~~~ 355 (359)
T 3ieg_A 345 GLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=9.3e-15 Score=164.11 Aligned_cols=499 Identities=12% Similarity=0.082 Sum_probs=341.1
Q ss_pred HHHHHHHhccCCCcchhHHHHHHHHHhCCCCChhhhHHHHHHHHccCC-hhHHHH---HhccC------CCCChh----h
Q 004425 61 WPQLVKISIGSGDLKLGQAVHAFLLKSGSQNDTFEANNLINLYAKFNR-LDVAQK---LFDGM------LVRSAI----T 126 (754)
Q Consensus 61 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~-~~~A~~---~~~~~------~~~~~~----~ 126 (754)
...|+..+-+.+++..-+..++..+..| ..++.++|+|...|...++ ++.-+. .++.. .++|+. +
T Consensus 842 ~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~ia 920 (1630)
T 1xi4_A 842 TDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVA 920 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHH
Confidence 4456666666666766777777777777 4688899999999987653 332111 00100 112221 1
Q ss_pred ------HHHHHHHHhcCCChhH-HHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCC--CCcHHHH
Q 004425 127 ------WTSLIKGYLDDGDYES-VLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGF--ENNVFVG 197 (754)
Q Consensus 127 ------~~~li~~~~~~~~~~~-a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~ 197 (754)
-.-||+..-+++.+.. |.-+.++. |...|..++.- +-+.=+++.++.....+ ..++.--
T Consensus 921 y~~g~~d~eli~vt~~n~l~k~~arylv~r~-------d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeV 988 (1630)
T 1xi4_A 921 YERGQCDLELINVCNENSLFKSLSRYLVRRK-------DPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEV 988 (1630)
T ss_pred hcccCCcHHHHHHHhcchhHHHHHHHHHHhc-------CHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHh
Confidence 1235555555555543 23333322 55666666632 22333455555555443 2344455
Q ss_pred HHHHHHhHhcCCHhHHHHHhccCCCC------CcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHh
Q 004425 198 TSLISMYFHSGCFREAENVFRGLAYK------DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCY 271 (754)
Q Consensus 198 ~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 271 (754)
...+..|...|.+.+|++++++..-. +....|.++....+. +..+..++..++... ...-+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHH
Confidence 67788888999999999999887632 235667777777777 556666666665421 2334667788
Q ss_pred ccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHH
Q 004425 272 ENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLE 351 (754)
Q Consensus 272 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 351 (754)
..|.+++|.++|+... -.....+.+ +-..|++++|.++.++.. +..+|..+..++.+.|++++|++.|.+
T Consensus 1061 ~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred hCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 8999999999998852 111122223 237788999999998774 467888999999999999999999966
Q ss_pred hHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHH
Q 004425 352 FLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFN 431 (754)
Q Consensus 352 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 431 (754)
. -|...|..++.+|.+.|+++++.+.+...++.. ++..+.+.++.+|++.+++++...+. ..++...|.
T Consensus 1131 A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~ 1199 (1630)
T 1xi4_A 1131 A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQ 1199 (1630)
T ss_pred c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHH
Confidence 3 467788889999999999999999999888755 33334445888999999988655553 345666777
Q ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 004425 432 AILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAK 511 (754)
Q Consensus 432 ~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 511 (754)
.+...|.. .|++++|..+|... ..|..+...+.+.|+++.|.+.++++ .+..+|..+..+|..
T Consensus 1200 ~iGd~le~--eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1200 QVGDRCYD--EKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHh--cCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 77778888 89999999999874 37888889999999999998888877 456788888888888
Q ss_pred cCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH--hcCCHHHHHHHH
Q 004425 512 CGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILGVLQACI--YSGLSEGGICLF 588 (754)
Q Consensus 512 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~--~~g~~~~a~~~~ 588 (754)
.|++..|...... ...+...+..++..|.+.|.+++|+.+++..+. +.|... .|.-+..+++ +-+++.++.++|
T Consensus 1263 ~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred hhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8999998887765 334555667888889999999999999988775 445443 4444444444 445555555555
Q ss_pred HHHHHHhCCCC------CccHHHHHHHHHhhcCCHHHHHHHH
Q 004425 589 NEIEQIYGLRP------ILEHFACMVDLLGRAGRLSEAMNLI 624 (754)
Q Consensus 589 ~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~ 624 (754)
..- ..++| +...|.-++.+|.+.|+++.|...+
T Consensus 1340 ~~r---ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1340 WSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHh---cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 433 34444 3456888899999999999888443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=1.3e-17 Score=172.18 Aligned_cols=323 Identities=9% Similarity=-0.015 Sum_probs=247.4
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 004425 325 NLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVD 404 (754)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 404 (754)
|+..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45677888899999999999999999998853 2356788888889999999999999999999875 345688899999
Q ss_pred HHHhCCCHHHHHHHHhcCCCCCh------hhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc
Q 004425 405 IYAKGGDLKSARMLLDGFSCKYT------AEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQA 478 (754)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 478 (754)
.|...|++++|...|++....+. ..+..+...+. ...+..+...+...|
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHcc
Confidence 99999999999999998764332 22332211100 011233444556667
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004425 479 CLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEE 555 (754)
Q Consensus 479 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 555 (754)
+++.|...++.+.+.. +.+...+..+...|...|++++|...++.+.+ .+..+|..+...|...|++++|+..|++
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777777766654 34566777788888888888888888887643 4567788888888888999999999988
Q ss_pred HHHcCCCCCHH-HHH------------HHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHhhcCCH
Q 004425 556 MKREGFAPDDI-SIL------------GVLQACIYSGLSEGGICLFNEIEQIYGLRPIL-----EHFACMVDLLGRAGRL 617 (754)
Q Consensus 556 m~~~g~~p~~~-t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~ 617 (754)
..+ ..|+.. .+. .+...+...|++++|...++++.+. .|+. ..+..++.++...|++
T Consensus 214 a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 214 CLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCH
Confidence 887 445443 222 2356688899999999999998773 2332 2355688899999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc
Q 004425 618 SEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 618 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 680 (754)
++|.+.+++. ...| ++..|..+...+...|++++|...++++++++|++...+..+..++...
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999866 2234 7889999999999999999999999999999999999988888776654
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.7e-17 Score=169.16 Aligned_cols=286 Identities=12% Similarity=0.024 Sum_probs=223.7
Q ss_pred CcchhHHHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004425 393 LSDVRLGTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSR 469 (754)
Q Consensus 393 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 469 (754)
+.+..++..+...+...|++++|.++|+++. +.+...+..++..+.. .|++++|..+++++.+.. +.+...+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE--LNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHH--HTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH--hhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 4455566666667777777777777777654 3344556666677777 888888888888888752 234467777
Q ss_pred HHHHHhccc-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCC
Q 004425 470 LLSLSASQA-CLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGL 545 (754)
Q Consensus 470 ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 545 (754)
+...+...| +++.|...++.+.+.. +.+...+..+...|...|++++|...|+++.+ .+...|..+...|...|+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 788888888 8888888888888764 44567788889999999999999999988753 345677888899999999
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC-------CCCCccHHHHHHHHHhhcCCH
Q 004425 546 GKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYG-------LRPILEHFACMVDLLGRAGRL 617 (754)
Q Consensus 546 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~ 617 (754)
+++|+..+++..+ ..|+ ...+..+...+...|++++|..+++++.+... .+.....+..++.+|.+.|++
T Consensus 175 ~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999988 4454 46888888899999999999999999877321 133456888999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHH-HhcCCch
Q 004425 618 SEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMY-AGQGMLD 684 (754)
Q Consensus 618 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 684 (754)
++|.+.+++. ...| +...|..+...+...|+.++|...++++++++|+++..+..++.++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999865 2223 6788999999999999999999999999999999999999999988 4555543
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=9.7e-17 Score=163.51 Aligned_cols=264 Identities=10% Similarity=-0.033 Sum_probs=226.7
Q ss_pred CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHH
Q 004425 424 CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGN 503 (754)
Q Consensus 424 ~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 503 (754)
..+...+..+...+.. .|++++|+++|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+.
T Consensus 19 ~~~~~~~~~~a~~~~~--~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 19 QENLDVVVSLAERHYY--NCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp -CCCTTHHHHHHHHHH--TTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 3455677778888888 999999999999998863 3334566678888899999999999999999865 45678889
Q ss_pred HHHHHHHhcC-CHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 004425 504 ALITMYAKCG-SIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYS 578 (754)
Q Consensus 504 ~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 578 (754)
.+...|...| ++++|...|++..+ .+...|..+...+...|++++|+..|+++.+. .|+ ...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHH
Confidence 9999999999 99999999998754 35678999999999999999999999999984 454 46777789999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcC
Q 004425 579 GLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSP-----------FSESPLLWRTLVSVSKLMA 647 (754)
Q Consensus 579 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~p~~~~~~~l~~~~~~~g 647 (754)
|++++|..+++++.+ ..+.+...+..++.+|.+.|++++|.+.++++- .+.+..+|..+...+...|
T Consensus 173 ~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 173 NNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 999999999999966 233446788999999999999999999997651 1335779999999999999
Q ss_pred ChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 648 NSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 648 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++++|...++++++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999986543
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=3.3e-15 Score=162.86 Aligned_cols=210 Identities=8% Similarity=-0.004 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHhccCC---C-ChhHHHHHHHHHHH
Q 004425 481 VRGRSLHAYSIKTGYAADVIVGNALITMYAK-------CGSID-------GAFQIFKGISD---R-DIVSWNAMLSAYAL 542 (754)
Q Consensus 481 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~ 542 (754)
+.+..++++++... +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 36667788877753 4567788888887775 68876 89999998763 3 46789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHH-HhhcCCHH
Q 004425 543 HGLGKGALLLFEEMKREGFAPDD--ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDL-LGRAGRLS 618 (754)
Q Consensus 543 ~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~ 618 (754)
.|++++|..+|+++++ +.|+. ..|...+..+.+.|++++|.++|++..+ ..|. ...|...+.. +...|+.+
T Consensus 334 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp TTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCTHHHHHHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchHHHHHHHHHHHHHcCChh
Confidence 9999999999999998 56754 4788888888889999999999999865 3343 2333332222 33689999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc----hHHHHHHHHHhcCCchHHHHHHHH
Q 004425 619 EAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG----SFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 619 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
+|.++|++. ...| ++..|..++......|+.++|..+++++++..|.++. .|...+......|+.+++..+.++
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999865 2234 6889999999999999999999999999998877665 777778888889999999999988
Q ss_pred HhhC
Q 004425 693 MNDL 696 (754)
Q Consensus 693 m~~~ 696 (754)
+.+.
T Consensus 489 ~~~~ 492 (530)
T 2ooe_A 489 RFTA 492 (530)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=2.7e-17 Score=165.96 Aligned_cols=285 Identities=13% Similarity=0.097 Sum_probs=136.4
Q ss_pred hcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHH
Q 004425 307 KHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGF 386 (754)
Q Consensus 307 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 386 (754)
+.|++++|.++++++..|+ +|..+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999996654 899999999999999999999965 36888999999999999999999998887
Q ss_pred HHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004425 387 AIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVT 466 (754)
Q Consensus 387 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 466 (754)
.++. .+++.+.+.|+.+|.++|+++++.++++. ++..+|+.+...|.. .|.+++|..+|..+ ..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~--~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYD--EKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C------------------CTTTHHHHHHHT---------TC
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHH--cCCHHHHHHHHHHh---------hh
Confidence 7774 45578899999999999999999988864 667799999999999 99999999999977 47
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCCh
Q 004425 467 FSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLG 546 (754)
Q Consensus 467 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 546 (754)
|..+..++.+.|+++.|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 889999999999999999999988 378899999999999999999988777655 4444455788999999999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh--cCCHHHHHHHHHHHHHHhCCCC------CccHHHHHHHHHhhcCCH
Q 004425 547 KGALLLFEEMKREGFAPDD-ISILGVLQACIY--SGLSEGGICLFNEIEQIYGLRP------ILEHFACMVDLLGRAGRL 617 (754)
Q Consensus 547 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~ 617 (754)
++|+.+++..+. ..+.. ..|+.+.-++++ -+++.+.++.|. ....++| +...|.-++.+|...+++
T Consensus 224 eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 224 EELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp HHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 999999999876 44443 355555555554 444555555443 3245555 467899999999999999
Q ss_pred HHHHHHHHhC
Q 004425 618 SEAMNLINSS 627 (754)
Q Consensus 618 ~~A~~~~~~~ 627 (754)
+.|...+-+-
T Consensus 299 d~A~~tm~~h 308 (449)
T 1b89_A 299 DNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 9998776554
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=3.7e-17 Score=169.57 Aligned_cols=279 Identities=11% Similarity=-0.031 Sum_probs=219.3
Q ss_pred HHhCCCHHHHHH-HHhcCC---CC----ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 004425 406 YAKGGDLKSARM-LLDGFS---CK----YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQ 477 (754)
Q Consensus 406 ~~~~g~~~~A~~-~~~~~~---~~----~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 477 (754)
+.-.|++++|.. .|++.. +. +...|..+...+.. .|++++|+..|+++.+.. +.+..++..+...+...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ--EGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH--TTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 334577778877 776543 21 24467778888888 899999999999998763 34556788888888999
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhHHHH---------------HHHH
Q 004425 478 ACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--R-DIVSWNA---------------MLSA 539 (754)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~ 539 (754)
|+++.|...++.+.+.. +.+..++..+...|...|++++|...|+++.+ | +...+.. .+..
T Consensus 112 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 112 EQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 99999999999998875 45778888899999999999999999987743 2 2222221 2333
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCC
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPD---DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGR 616 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 616 (754)
+...|++++|+..|+++.+. .|+ ..++..+...+...|++++|..+|+++... .+.+...+..++.+|.+.|+
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HhhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCC
Confidence 44889999999999999984 455 678899999999999999999999999773 33446789999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC-----------cchHHHHHHHHHhcCCc
Q 004425 617 LSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD-----------AGSFILVSNMYAGQGML 683 (754)
Q Consensus 617 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~ 683 (754)
+++|++.++++ ...| +...|..+..++...|++++|...+++++++.|++ ...|..++.+|...|++
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 99999999876 3334 68899999999999999999999999999999987 78999999999999999
Q ss_pred hHHHHHHHH
Q 004425 684 DEAAKVRTT 692 (754)
Q Consensus 684 ~~a~~~~~~ 692 (754)
++|..++++
T Consensus 347 ~~A~~~~~~ 355 (368)
T 1fch_A 347 DAYGAADAR 355 (368)
T ss_dssp GGHHHHHTT
T ss_pred HhHHHhHHH
Confidence 999998863
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=4.1e-15 Score=160.33 Aligned_cols=354 Identities=10% Similarity=-0.011 Sum_probs=235.5
Q ss_pred cCChHHHHHHHHccCC-CCchhHHHHHHHHHh----cCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcc----cCChH
Q 004425 308 HGMSEEAERMFDAISE-RNLISWTALISGYVR----SGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSV----CSNLE 378 (754)
Q Consensus 308 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~ 378 (754)
.+++++|...|++..+ .+...+..+...|.. .++.++|+..|++..+.| +...+..+-..+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 4444444444443322 233344444444444 445555555555544433 22333333333333 44555
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHh----CCCHHHHHHHHhcCC-CCChhhHHHHHHHHhhh--hcCCHHHHHHH
Q 004425 379 LGLQLHGFAIKHGYLSDVRLGTALVDIYAK----GGDLKSARMLLDGFS-CKYTAEFNAILSGFMEK--IADDEEDVMVL 451 (754)
Q Consensus 379 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~--~~~~~~~A~~~ 451 (754)
+|...++...+.| +...+..|..+|.. .++.++|.+.|++.. ..+...+..+...|... ..++.++|+..
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 5555555555443 23344444445544 455555555555443 22334444444444331 05778888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhc----ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHh
Q 004425 452 FSQQRLAGMEPDPVTFSRLLSLSAS----QACLVRGRSLHAYSIKTGYAADVIVGNALITMYAK----CGSIDGAFQIFK 523 (754)
Q Consensus 452 ~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 523 (754)
|++..+.| +...+..+...+.. .++.++|..+++...+.| +...+..+..+|.. .++.++|...|+
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 88877754 44556666666654 778889999988888765 45566777777877 889999999998
Q ss_pred ccCC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHH
Q 004425 524 GISD-RDIVSWNAMLSAYALH-----GLGKGALLLFEEMKREGFAPDDISILGVLQACIYSG---LSEGGICLFNEIEQI 594 (754)
Q Consensus 524 ~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~ 594 (754)
...+ .+..++..+...|... ++.++|+..|++..+.| +...+..+...+...| ++++|.++|++..+
T Consensus 284 ~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~- 359 (490)
T 2xm6_A 284 KSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA- 359 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-
Confidence 8754 4667788888888887 89999999999998865 4456677777777756 78899999999987
Q ss_pred hCCCCCccHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhccCCC-
Q 004425 595 YGLRPILEHFACMVDLLGR----AGRLSEAMNLINSSPFSESPLLWRTLVSVSKL----MANSKFSILASKRLLDLEPK- 665 (754)
Q Consensus 595 ~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~- 665 (754)
. .+...+..+..+|.. .+++++|.+++++.....++..+..|...+.. .+|.++|...++++.+.+|+
T Consensus 360 ~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 436 (490)
T 2xm6_A 360 K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNL 436 (490)
T ss_dssp T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCH
T ss_pred C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 2 356778888999988 89999999999876444578888899998887 89999999999999999854
Q ss_pred --CcchHHHHHHHHHhc
Q 004425 666 --DAGSFILVSNMYAGQ 680 (754)
Q Consensus 666 --~~~~~~~l~~~~~~~ 680 (754)
++.+...++.++...
T Consensus 437 ~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 437 FGTENRNITEKKLTAKQ 453 (490)
T ss_dssp HHHHHHHHHHTTSCHHH
T ss_pred cCCHHHHHHHHhcCHhH
Confidence 777777777776643
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=1e-16 Score=161.77 Aligned_cols=221 Identities=12% Similarity=0.055 Sum_probs=75.4
Q ss_pred hcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHH
Q 004425 206 HSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGL 285 (754)
Q Consensus 206 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 285 (754)
+.|++++|.++++++..++ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5677888888888886554 8888889999999999999888652 5777888888888888899888887776
Q ss_pred HHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHH
Q 004425 286 AVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLA 365 (754)
Q Consensus 286 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 365 (754)
..+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 6663 45577788888889999998888877753 67778888888888888888888888866 3677
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCH
Q 004425 366 TVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDE 445 (754)
Q Consensus 366 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 445 (754)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+ .|.+
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek--~G~~ 223 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQD--RGYF 223 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHH--TTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHH--CCCH
Confidence 7777777777777777777766 256667777777777777777766555543 333333446666666 6677
Q ss_pred HHHHHHHHHHHH
Q 004425 446 EDVMVLFSQQRL 457 (754)
Q Consensus 446 ~~A~~~~~~m~~ 457 (754)
++|+.+++....
T Consensus 224 eEai~lLe~aL~ 235 (449)
T 1b89_A 224 EELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 777666666653
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=8.1e-16 Score=152.58 Aligned_cols=249 Identities=10% Similarity=-0.004 Sum_probs=157.5
Q ss_pred hCCCHHHHHHHHhcCCCCChh----hHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHH
Q 004425 408 KGGDLKSARMLLDGFSCKYTA----EFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRG 483 (754)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 483 (754)
..|++..|...++.....+.. ....+..+|.. .|++++|+..++.. -.|+..++..+...+...++.+.|
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~--~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLA--QRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH--TTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHH--CCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 355666666665554433221 22334556666 66776666655431 245556666777777777777777
Q ss_pred HHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 004425 484 RSLHAYSIKTGYAA-DVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFA 562 (754)
Q Consensus 484 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 562 (754)
.+.++.+...+..| +...+..+...|...|++++|.+.+++ ..+...+..++..|.+.|++++|.+.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 77777777665433 556667777889999999999999998 456778888999999999999999999999884 4
Q ss_pred CCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 004425 563 PDDISI---LGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWR 637 (754)
Q Consensus 563 p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 637 (754)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|++.+++. ...| ++.+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 665321 11223334457788888888888763 3334455555555555666666655555543 2223 455555
Q ss_pred HHHHHHHhcCChHH-HHHHHHHhhccCCCCcc
Q 004425 638 TLVSVSKLMANSKF-SILASKRLLDLEPKDAG 668 (754)
Q Consensus 638 ~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~ 668 (754)
.++..+...|+.++ +.+.++++++++|+++.
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 55555555555543 34555555555555543
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=7e-17 Score=167.27 Aligned_cols=261 Identities=11% Similarity=-0.038 Sum_probs=214.6
Q ss_pred ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHH
Q 004425 426 YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNAL 505 (754)
Q Consensus 426 ~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 505 (754)
+...|..+...+.. .|++++|+.+|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~--~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLK--EGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHH--HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHH--CCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 44568888888999 999999999999998863 3456788899999999999999999999999875 4567889999
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCC-------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 004425 506 ITMYAKCGSIDGAFQIFKGISDRD-------------IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGV 571 (754)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 571 (754)
...|...|++++|...|+++.+.+ ...+..+...+...|++++|+.+|+++.+..... +..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999999885421 1233455888999999999999999999853221 46789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 004425 572 LQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANS 649 (754)
Q Consensus 572 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 649 (754)
...+...|++++|..+|+++.+. .+.+...+..++.+|.+.|++++|++.++++ ...| +..+|..+..++...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999873 3445778999999999999999999999876 3344 588999999999999999
Q ss_pred HHHHHHHHHhhccCCC------------CcchHHHHHHHHHhcCCchHHHHHHHH
Q 004425 650 KFSILASKRLLDLEPK------------DAGSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 650 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
++|...+++++++.|+ +...|..++.++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999887 367899999999999999999988764
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=3.6e-14 Score=152.95 Aligned_cols=354 Identities=10% Similarity=-0.014 Sum_probs=292.4
Q ss_pred CCchhHHHHHHHHHh----cCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcc----cCChHHHHHHHHHHHHhCCCcc
Q 004425 324 RNLISWTALISGYVR----SGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSV----CSNLELGLQLHGFAIKHGYLSD 395 (754)
Q Consensus 324 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 395 (754)
.+..++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|...|+...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 455666666677777 899999999999998874 45666677777777 899999999999999876 5
Q ss_pred hhHHHHHHHHHHh----CCCHHHHHHHHhcCC-CCChhhHHHHHHHHhhhh--cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004425 396 VRLGTALVDIYAK----GGDLKSARMLLDGFS-CKYTAEFNAILSGFMEKI--ADDEEDVMVLFSQQRLAGMEPDPVTFS 468 (754)
Q Consensus 396 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~--~~~~~~A~~~~~~m~~~g~~p~~~~~~ 468 (754)
...+..|..+|.. .+++++|...|++.. ..+...+..+...|.... .++.++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667778888888 889999999999876 345566777777666421 578999999999998874 566777
Q ss_pred HHHHHHhc----ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhccCC-CChhHHHHHHHH
Q 004425 469 RLLSLSAS----QACLVRGRSLHAYSIKTGYAADVIVGNALITMYAK----CGSIDGAFQIFKGISD-RDIVSWNAMLSA 539 (754)
Q Consensus 469 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 539 (754)
.+...+.. .++.++|...+.+..+.| +...+..+..+|.. .+++++|..+|++..+ .+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777 899999999999999876 56778888888886 8999999999998754 566778888888
Q ss_pred HHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 004425 540 YAL----HGLGKGALLLFEEMKREGFAPDDISILGVLQACIYS-----GLSEGGICLFNEIEQIYGLRPILEHFACMVDL 610 (754)
Q Consensus 540 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 610 (754)
|.. .++.++|+..|++..+.| +...+..+...+... +++++|..+|++..+ .+ +...+..+..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-QG---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-cC---CHHHHHHHHHH
Confidence 888 899999999999998764 455777777888877 899999999999987 33 45677888888
Q ss_pred HhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh----
Q 004425 611 LGRAG---RLSEAMNLINSSPFSESPLLWRTLVSVSKL----MANSKFSILASKRLLDLEPKDAGSFILVSNMYAG---- 679 (754)
Q Consensus 611 ~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 679 (754)
|.+.| +.++|++++++.....++..+..|...+.. .++.++|...++++.+.. ++.++..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88767 889999999877444688999999999988 899999999999999864 57899999999999
Q ss_pred cCCchHHHHHHHHHhhCCC
Q 004425 680 QGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 680 ~g~~~~a~~~~~~m~~~~~ 698 (754)
.+++++|...+++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999987663
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=3.6e-14 Score=154.62 Aligned_cols=423 Identities=11% Similarity=0.040 Sum_probs=266.2
Q ss_pred CCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCC---CcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHH
Q 004425 191 ENNVFVGTSLISMYFHSGCFREAENVFRGLAYK---DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVI 267 (754)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 267 (754)
+-+...|..++. +.+.|++++|..+|+++... +...|...+..+.+.|++++|..+|++..... |+...|...+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 335667777777 46678888888888776543 45567778888888888888888888877653 5655555555
Q ss_pred HHH-hccCCchHHHH----HHHHHHHh-cCCC-ChhHHHHHHHHHHh---------cCChHHHHHHHHccCC-CCchhHH
Q 004425 268 SVC-YENLGVEEGKQ----LHGLAVKF-GVVR-EISVGNAIVTMYGK---------HGMSEEAERMFDAISE-RNLISWT 330 (754)
Q Consensus 268 ~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~-~~~~~~~ 330 (754)
... ...|+.+.|.+ +|+..++. |..| +..+|...+....+ .|+++.|..+|++..+ |+. ...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~-~~~ 165 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI-NIE 165 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCT-THH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhh-hHH
Confidence 432 24566666554 55555442 4443 45566666665544 4666666666666554 211 001
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCC
Q 004425 331 ALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGG 410 (754)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 410 (754)
.+-..|.. ++... +..+...++. ...+++..|..++..+..
T Consensus 166 ~~~~~~~~---~e~~~-------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~--------------------- 206 (530)
T 2ooe_A 166 QLWRDYNK---YEEGI-------------NIHLAKKMIE--DRSRDYMNARRVAKEYET--------------------- 206 (530)
T ss_dssp HHHHHHHH---HHHHH-------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHH---HHHhh-------------chhHHHHHHH--HhhHHHHHHHHHHHHHHH---------------------
Confidence 11111110 00000 0000011110 012233344443333211
Q ss_pred CHHHHHHHHhcCC---CCC--------hhhHHHHHHHHhhhh--cCC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004425 411 DLKSARMLLDGFS---CKY--------TAEFNAILSGFMEKI--ADD----EEDVMVLFSQQRLAGMEPDPVTFSRLLSL 473 (754)
Q Consensus 411 ~~~~A~~~~~~~~---~~~--------~~~~~~li~~~~~~~--~~~----~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 473 (754)
....++... .++ ...|...+.-..... .++ .+++..+|++..... +-+...|..+...
T Consensus 207 ----~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~ 281 (530)
T 2ooe_A 207 ----VMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQY 281 (530)
T ss_dssp ----HHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred ----HHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 001111100 010 123333332211100 122 246777888887752 3345667666666
Q ss_pred Hhc-------ccchH-------HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-h-hHHHH
Q 004425 474 SAS-------QACLV-------RGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--RD-I-VSWNA 535 (754)
Q Consensus 474 ~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~-~~~~~ 535 (754)
+.+ .|+++ .|..+++++.+.-.+.+...+..++..+.+.|++++|..+|+++.+ |+ . ..|..
T Consensus 282 ~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 361 (530)
T 2ooe_A 282 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQ 361 (530)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHH
T ss_pred HHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHH
Confidence 654 68877 8899999988733355688899999999999999999999998753 43 3 48999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHH-HHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh
Q 004425 536 MLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQA-CIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR 613 (754)
Q Consensus 536 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 613 (754)
++..+.+.|+.++|..+|++..+. .|+. ..|...... +...|++++|..+|++..+.. +.+...+..+++.+.+
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~ 437 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSH 437 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHh
Confidence 999999999999999999999984 4442 333332222 346899999999999998742 3356789999999999
Q ss_pred cCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 614 AGRLSEAMNLINSS----PFSES--PLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 614 ~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 438 ~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 438 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp TTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 99999999999875 33332 558999999999999999999999999999985
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=5.9e-15 Score=158.68 Aligned_cols=367 Identities=10% Similarity=-0.043 Sum_probs=232.0
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHhHhc-----C--ccc-ChhhHHHHHHHhcccCChHHHHHHHHHHHHhC--C--
Q 004425 325 NLISWTALISGYVRSGHGGKAINGFLEFLDL-----G--ICC-DSSCLATVIDGCSVCSNLELGLQLHGFAIKHG--Y-- 392 (754)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~-- 392 (754)
....||.+...+...|++++|++.|++.++. + ..| ...+|+.+...|...|++++|...++++.+.. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567999999999999999999999987652 1 122 24578888889999999999999998877621 0
Q ss_pred --C-cchhHHHHHHHHHHh--CCCHHHHHHHHhcCC---CCChhhHHHHHHHHhh-hhcCCHHHHHHHHHHHHHcCCCCC
Q 004425 393 --L-SDVRLGTALVDIYAK--GGDLKSARMLLDGFS---CKYTAEFNAILSGFME-KIADDEEDVMVLFSQQRLAGMEPD 463 (754)
Q Consensus 393 --~-~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~-~~~~~~~~A~~~~~~m~~~g~~p~ 463 (754)
. ....++..+..++.+ .+++++|...|++.. +.+...+..+...+.. ...++.++|++.+++..+. .|+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCc
Confidence 1 123455555444444 456888988888765 3445555555444322 1157778888888887765 344
Q ss_pred -HHHHHHHHHHHh----cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhHHHH
Q 004425 464 -PVTFSRLLSLSA----SQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--R-DIVSWNA 535 (754)
Q Consensus 464 -~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 535 (754)
...+..+...+. ..++.++|.+.++++.+.. +.+..++..+...|.+.|++++|...|++..+ | +..+|..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 344444444443 3456778888888887765 45667778888888999999999988887753 3 4556777
Q ss_pred HHHHHHHc-------------------CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 004425 536 MLSAYALH-------------------GLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIY 595 (754)
Q Consensus 536 li~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 595 (754)
+..+|... +..++|+..+++..+ ..|+. .++..+...+...|++++|..+|++..+ .
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~-~ 363 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFS-K 363 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh-c
Confidence 77776432 235667777777776 44544 4677788888888888888888888866 2
Q ss_pred CCCCCc--cHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHH
Q 004425 596 GLRPIL--EHFACMVDL-LGRAGRLSEAMNLINSS-PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFI 671 (754)
Q Consensus 596 ~~~p~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 671 (754)
...+.. ..+..+... +...|+.++|++.+++. ...|+...+.. ....+..++++.++.+|+++.+|.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHH
Confidence 322221 123333333 34678888888888754 44555433322 233456677888888999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeE
Q 004425 672 LVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSW 706 (754)
Q Consensus 672 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 706 (754)
.||.+|...|++++|.+.+++..+.+.......+|
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999999999999987766554444444
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=1.3e-15 Score=157.81 Aligned_cols=283 Identities=11% Similarity=-0.008 Sum_probs=129.7
Q ss_pred hcCChHHHHH-HHHccCC-----C--CchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChH
Q 004425 307 KHGMSEEAER-MFDAISE-----R--NLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLE 378 (754)
Q Consensus 307 ~~g~~~~A~~-~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 378 (754)
-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3455566655 5554332 1 23445555555666666666666666555432 112333344444444444444
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHc
Q 004425 379 LGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLA 458 (754)
Q Consensus 379 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~ 458 (754)
.|...++.+.+.. +.+...|..+...|.. .|++++|+..|+++...
T Consensus 116 ~A~~~~~~al~~~--------------------------------~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 116 LAISALRRCLELK--------------------------------PDNQTALMALAVSFTN--ESLQRQACEILRDWLRY 161 (368)
T ss_dssp HHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC--------------------------------CCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh
Confidence 4444444444332 2344455555555555 66666777777666654
Q ss_pred CCCCCHH-HHHH---------------HHHHHhcccchHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHH
Q 004425 459 GMEPDPV-TFSR---------------LLSLSASQACLVRGRSLHAYSIKTGYAA-DVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 459 g~~p~~~-~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
. |+.. .+.. .+..+...|++++|...++.+.+..-.. +..
T Consensus 162 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~--------------------- 218 (368)
T 1fch_A 162 T--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD--------------------- 218 (368)
T ss_dssp S--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH---------------------
T ss_pred C--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHH---------------------
Confidence 2 3221 1110 1122224455555555555554432110 234
Q ss_pred HhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC
Q 004425 522 FKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI 600 (754)
Q Consensus 522 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 600 (754)
+|..+...|...|++++|+..|+++++. .|+ ..++..+...+...|++++|..+|+++.+. .+.+
T Consensus 219 ----------~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~ 284 (368)
T 1fch_A 219 ----------VQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGY 284 (368)
T ss_dssp ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred ----------HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc
Confidence 4444444444455555555555544442 232 234444444555555555555555554431 1122
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC----CC---------CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS----PF---------SESPLLWRTLVSVSKLMANSKFSILASKRLLD 661 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~---------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 661 (754)
...+..++.+|.+.|++++|.+.++++ +. .....+|..+..++...|+.++|..++++.++
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 334445555555555555555554433 10 01256666676777777777776666655443
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=1.1e-15 Score=155.55 Aligned_cols=256 Identities=9% Similarity=-0.055 Sum_probs=191.8
Q ss_pred HHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 004425 430 FNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMY 509 (754)
Q Consensus 430 ~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 509 (754)
|..+...+.. .|++++|+.+|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|
T Consensus 24 ~~~~a~~~~~--~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 24 PMEEGLSMLK--LANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 4444455555 666666666666666542 2244556666666667777777777777766653 33556666777777
Q ss_pred HhcCCHHHHHHHHhccCC--C-ChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHH
Q 004425 510 AKCGSIDGAFQIFKGISD--R-DIVSWNAM--------------LS-AYALHGLGKGALLLFEEMKREGFAP-DDISILG 570 (754)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ 570 (754)
...|++++|...|+++.+ | +...+..+ .. .+...|++++|+..++++.+. .| +...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHH
Confidence 777777777777776532 1 22222222 22 367788999999999999984 34 5568888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMAN 648 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 648 (754)
+...+...|++++|..+++++.+. .+.+...+..++.+|.+.|++++|.+.++++ ...| +...|..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999773 3345678889999999999999999999875 2334 68899999999999999
Q ss_pred hHHHHHHHHHhhccCCC------------CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 649 SKFSILASKRLLDLEPK------------DAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 649 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
+++|...+++++++.|+ ++..+..++.+|...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999 7889999999999999999999998744
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=6.2e-16 Score=160.09 Aligned_cols=230 Identities=15% Similarity=0.027 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHH
Q 004425 464 PVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAY 540 (754)
Q Consensus 464 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 540 (754)
...+..+...+.+.|++++|..+++.+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3458888889999999999999999999875 55788999999999999999999999998853 4578999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 541 ALHGLGKGALLLFEEMKREGFAPDDI-----------SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 541 ~~~g~~~~A~~~~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
...|++++|+..|+++.+ +.|+.. .+..+...+...|++++|..+|+++.+...-.++...+..++.
T Consensus 144 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999998 445432 2234577889999999999999999884222225778999999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHH
Q 004425 610 LLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAA 687 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 687 (754)
+|.+.|++++|++.++++ ...| +..+|..+..++...|++++|+..++++++++|+++.++..++.+|...|++++|.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999876 2334 68999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 004425 688 KVRTTMNDL 696 (754)
Q Consensus 688 ~~~~~m~~~ 696 (754)
..++++.+.
T Consensus 302 ~~~~~al~~ 310 (365)
T 4eqf_A 302 SNFLTALSL 310 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998663
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=180.59 Aligned_cols=150 Identities=10% Similarity=0.091 Sum_probs=130.1
Q ss_pred CCChhhhHHHHHHHHccCChhHHHHHhccC-------CCCChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhH
Q 004425 90 QNDTFEANNLINLYAKFNRLDVAQKLFDGM-------LVRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTC 162 (754)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 162 (754)
..-..+||+||++||+.|++++|..+|++| ..||++|||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 334568999999999999999999999775 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCh-HHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCC-----CcchHHHHHHHHH
Q 004425 163 SVILEACSLLEDR-IFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYK-----DVRCVNFMILEYN 236 (754)
Q Consensus 163 ~~ll~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~ 236 (754)
+++|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.+++..+..+ .+.+.+.|.+.|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 789999999999999999999999999988887777777776665532 2345555666666
Q ss_pred HcC
Q 004425 237 KAG 239 (754)
Q Consensus 237 ~~g 239 (754)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 655
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.4e-17 Score=181.08 Aligned_cols=131 Identities=5% Similarity=0.024 Sum_probs=114.4
Q ss_pred CCcHHHHHHHHHHhHhcCCHhHHHHHhccCC-------CCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchH
Q 004425 191 ENNVFVGTSLISMYFHSGCFREAENVFRGLA-------YKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTF 263 (754)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 263 (754)
..-..+||+||++||++|++++|.++|++|. .||+++||+||.+||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 4456789999999999999999999997653 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCc-hHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHcc
Q 004425 264 TNVISVCYENLGV-EEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAI 321 (754)
Q Consensus 264 ~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 321 (754)
+++|.++|+.|+. +.|.++|++|.+.|+.||..+|++++..+.+.+-++.+.++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999985 789999999999999999999999998887765555555554433
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=3.5e-14 Score=152.58 Aligned_cols=387 Identities=12% Similarity=-0.009 Sum_probs=188.2
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHhHHC-----C--CCC-CcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChh
Q 004425 225 VRCVNFMILEYNKAGESEMAFHVFVHLLSS-----D--FEP-NDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREIS 296 (754)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 296 (754)
...||.+...+...|++++|++.|++-.+. + ..| ...+|+.+...+...|++++|...++...+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~------ 124 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC------ 124 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh------
Confidence 335666666666677777777766654321 0 111 12344445555555555555555544443211
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHccCC----CCchhHHHHHHHHHh--cCChhHHHHHHHHhHhcCcccChh-hHHHHHH
Q 004425 297 VGNAIVTMYGKHGMSEEAERMFDAISE----RNLISWTALISGYVR--SGHGGKAINGFLEFLDLGICCDSS-CLATVID 369 (754)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~ 369 (754)
..... ....+++.+..++.. .+++++|+..|++..+. .|+.. .+..+..
T Consensus 125 ----------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 125 ----------------------EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAI 180 (472)
T ss_dssp ----------------------HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred ----------------------HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 00000 011223333333332 23455666666555543 23322 2222211
Q ss_pred H---hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh----CCCHHHHHHHHhcCC---CCChhhHHHHHHHHhh
Q 004425 370 G---CSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAK----GGDLKSARMLLDGFS---CKYTAEFNAILSGFME 439 (754)
Q Consensus 370 ~---~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 439 (754)
. +...++.+.|.+.+++.++.. +.+..++..+...+.. .|+.++|.+.+++.. +.+...+..+...|..
T Consensus 181 ~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 181 ASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 1 233445555555555555543 2233333333333333 345566666665443 4455566677777777
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 004425 440 KIADDEEDVMVLFSQQRLAGMEPDP-VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGA 518 (754)
Q Consensus 440 ~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 518 (754)
.|++++|+..|++..+. .|+. .++..+...+...+....+. ............+..+.|
T Consensus 260 --~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~A 319 (472)
T 4g1t_A 260 --KDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNL----------------RENGMYGKRKLLELIGHA 319 (472)
T ss_dssp --TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHH
T ss_pred --cCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhH----------------HHHHHHHHHHHHhhHHHH
Confidence 88888888888887765 4443 34444433332211110000 000011111122345677
Q ss_pred HHHHhccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHH
Q 004425 519 FQIFKGIS---DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI--SILGVLQ-ACIYSGLSEGGICLFNEIE 592 (754)
Q Consensus 519 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~ 592 (754)
...|+... ..+..+|..+...|...|++++|+..|++.++....|... .+..+.. .....|++++|+..|++..
T Consensus 320 ~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal 399 (472)
T 4g1t_A 320 VAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399 (472)
T ss_dssp HHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777654 3455678889999999999999999999999854333221 2223322 3457899999999999986
Q ss_pred HHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchH
Q 004425 593 QIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-P-FSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSF 670 (754)
Q Consensus 593 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 670 (754)
+ +.|+....... ...+.+++++. . .+.++.+|..|+.++...|+.++|+..+++++++.|.+|.++
T Consensus 400 ~---i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 400 K---INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp H---SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred h---cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 5 55654332222 22333343322 2 233678999999999999999999999999999999988877
Q ss_pred HHHH
Q 004425 671 ILVS 674 (754)
Q Consensus 671 ~~l~ 674 (754)
.-+|
T Consensus 468 ~~~G 471 (472)
T 4g1t_A 468 SWNG 471 (472)
T ss_dssp ----
T ss_pred hcCC
Confidence 6665
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=5.4e-15 Score=139.95 Aligned_cols=193 Identities=15% Similarity=0.113 Sum_probs=155.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHH
Q 004425 496 AADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGV 571 (754)
Q Consensus 496 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l 571 (754)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.++ +.|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 45677788888899999999999999998754 3567888999999999999999999999998 55755 578888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 004425 572 LQACIYS-----------GLSEGGICLFNEIEQIYGLRP-ILEHFACMVDLLGRAGRLSEAMNLINSS-PFSESPLLWRT 638 (754)
Q Consensus 572 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 638 (754)
..++... |++++|+..|++..+ +.| +...+..+..+|...|++++|++.+++. ....++..|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8899999 999999999999977 244 4678889999999999999999999865 11178999999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 639 LVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 639 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
+..++...|++++|+..++++++++|+++..+..++.+|...|++++|...+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998753
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.63 E-value=1.8e-13 Score=135.55 Aligned_cols=251 Identities=8% Similarity=-0.027 Sum_probs=181.7
Q ss_pred HHHhcCChHHHHHHHHccCCCCc----hhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHH
Q 004425 304 MYGKHGMSEEAERMFDAISERNL----ISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLEL 379 (754)
Q Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 379 (754)
-....|++..|+..++.....+. .....+.++|...|+++.|+..++. .-.|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34556888888888877655332 3445567788888888888876644 134566677777788888888888
Q ss_pred HHHHHHHHHHhCCCc-chhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHc
Q 004425 380 GLQLHGFAIKHGYLS-DVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLA 458 (754)
Q Consensus 380 a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~ 458 (754)
|.+.++.+...+..| +...+..+...|...|++++|.+.+++ ..+...+..+...+.+ .|+.++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~--~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLK--LDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhh
Confidence 888888888776544 456667777889999999999999988 5677788888888988 99999999999999876
Q ss_pred CCCCCHHHH---HHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhH
Q 004425 459 GMEPDPVTF---SRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVS 532 (754)
Q Consensus 459 g~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~ 532 (754)
.|+.... ...+..+...|++++|..+++++.+. .+.+..+++.+..+|.+.|++++|...|++..+ .+..+
T Consensus 160 --~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 --DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp --CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4654311 12233344557888888888888876 355777777777788888888888887777642 35567
Q ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHHcCCCCCHHH
Q 004425 533 WNAMLSAYALHGLGKG-ALLLFEEMKREGFAPDDIS 567 (754)
Q Consensus 533 ~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~t 567 (754)
|..++..+...|+.++ +.++++++.+ +.|+...
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~ 270 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF 270 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH
Confidence 7777777777777765 4577777777 5566543
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=2.1e-14 Score=140.30 Aligned_cols=218 Identities=9% Similarity=-0.061 Sum_probs=164.8
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C----C----hhHHHH
Q 004425 466 TFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--R----D----IVSWNA 535 (754)
Q Consensus 466 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~ 535 (754)
.+..+...+...|++++|...++.+.+.. .+...+..+...|...|++++|...|+...+ | + ..+|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34445555555666666666666666555 5556666666667777777777776666542 1 1 466777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcC
Q 004425 536 MLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAG 615 (754)
Q Consensus 536 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 615 (754)
+...|...|++++|+..|++..+ +.|+. ..+...|++++|...++.+.. ..+.+...+..++..+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence 88888888888888888888887 44553 345566778888888888866 22334567778888889999
Q ss_pred CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 616 RLSEAMNLINSS-PF-SESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 616 ~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
++++|.+.++++ .. +.++..|..+...+...|++++|...++++++.+|+++..|..++.+|...|++++|...+++.
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999988865 22 3368889999999999999999999999999999999999999999999999999999999987
Q ss_pred hhC
Q 004425 694 NDL 696 (754)
Q Consensus 694 ~~~ 696 (754)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 38
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.62 E-value=9e-14 Score=141.19 Aligned_cols=228 Identities=11% Similarity=-0.017 Sum_probs=123.4
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 004425 326 LISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDI 405 (754)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 405 (754)
...|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|+++.|...++.+.+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 85 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------------- 85 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------
Confidence 3445556666666777777777776666542 1133344444445555555555555555554432
Q ss_pred HHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH--------------
Q 004425 406 YAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPV-TFSRL-------------- 470 (754)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l-------------- 470 (754)
+.+...|..+...+.. .|++++|+..+++..+. .|+.. .+..+
T Consensus 86 ------------------~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (327)
T 3cv0_A 86 ------------------PKDIAVHAALAVSHTN--EHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQS 143 (327)
T ss_dssp ------------------TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHT--STTTTTC------------------
T ss_pred ------------------cCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHH
Confidence 2233344444445555 66666666666666554 23222 11111
Q ss_pred HH-HHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCCh
Q 004425 471 LS-LSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLG 546 (754)
Q Consensus 471 l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 546 (754)
.. .+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...++++.+ .+..+|..+...|...|++
T Consensus 144 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 144 EDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence 11 2556667777777777766654 23455566666666666666666666665532 2345566666666666666
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 547 KGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 547 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
++|+..|+++.+. .|+ ..++..+..++...|++++|...++++.+
T Consensus 223 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 223 QEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666666666552 232 34555555566666666666666665544
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=9.6e-14 Score=137.07 Aligned_cols=240 Identities=10% Similarity=-0.098 Sum_probs=194.8
Q ss_pred cCCHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGME--P-DPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGA 518 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 518 (754)
.|++++|+..|+++.+.... | +..++..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 67889999999999876321 1 24677888889999999999999999999875 45678899999999999999999
Q ss_pred HHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 004425 519 FQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIY 595 (754)
Q Consensus 519 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 595 (754)
...|+++.+ .+..+|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 999998853 4678899999999999999999999999998 5677666666666778889999999999888773
Q ss_pred CCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcch
Q 004425 596 GLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-----SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGS 669 (754)
Q Consensus 596 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 669 (754)
.+++...+ .++..+...++.++|.+.+++. ...| +...|..+...+...|+.++|...++++++++|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 33444444 4778888889999999999865 3223 25788999999999999999999999999999987544
Q ss_pred HHHHHHHHHhcCCchHHHHHH
Q 004425 670 FILVSNMYAGQGMLDEAAKVR 690 (754)
Q Consensus 670 ~~~l~~~~~~~g~~~~a~~~~ 690 (754)
.+.++...|++++|.+.+
T Consensus 252 ---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 ---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHhhHHHH
Confidence 467888999999998876
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=8e-14 Score=136.10 Aligned_cols=233 Identities=9% Similarity=-0.018 Sum_probs=186.0
Q ss_pred hHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCC--CCc----hhHH
Q 004425 429 EFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGY--AAD----VIVG 502 (754)
Q Consensus 429 ~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 502 (754)
.|..+...+.. .|++++|+..|++..+.. .+...+..+...+...|++++|...+..+.+..- .++ ..++
T Consensus 7 ~~~~~g~~~~~--~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 7 KEKAEGNKFYK--ARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHH--hccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 45556666667 888888888888888776 6677788888888888888888888888876431 111 5778
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC
Q 004425 503 NALITMYAKCGSIDGAFQIFKGISD--RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSG 579 (754)
Q Consensus 503 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 579 (754)
..+...|.+.|++++|...|++..+ ++ ...+...|++++|+..++++.. ..|+. ..+..+...+...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence 8888899999999999999988754 33 2456677889999999999988 55654 47888888999999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 004425 580 LSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASK 657 (754)
Q Consensus 580 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 657 (754)
++++|...|+++.+. .+.+...+..++.+|.+.|++++|++.+++. ...| ++..|..+..++...|+.++|...++
T Consensus 154 ~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999873 3345678889999999999999999999865 2334 68899999999999999999999999
Q ss_pred HhhccC------CCCcchHHHHHHH
Q 004425 658 RLLDLE------PKDAGSFILVSNM 676 (754)
Q Consensus 658 ~~~~~~------p~~~~~~~~l~~~ 676 (754)
++++++ |++...+..+..+
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999 8877777666543
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=1.3e-13 Score=135.91 Aligned_cols=253 Identities=9% Similarity=-0.030 Sum_probs=126.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHH
Q 004425 399 GTALVDIYAKGGDLKSARMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDP--VTFSRLLSL 473 (754)
Q Consensus 399 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~ 473 (754)
.......+...|++++|...|++.. +.+...|..+...|.. .|++++|+..|++..+..-.|+. ..|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE--LAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHH--TTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--HhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3344555556666666666665543 2233355555555555 56666666665555542211111 124445555
Q ss_pred HhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHH
Q 004425 474 SASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGAL 550 (754)
Q Consensus 474 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 550 (754)
+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+...+++++|+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555432 22334445555555555555555555554432 12333444441222233555555
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHh
Q 004425 551 LLFEEMKREGFAPD-DISILGVLQACIYSGL---SEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINS 626 (754)
Q Consensus 551 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (754)
..|+++.+ ..|+ ...+..+..++...|+ +++|...++++.+...-.|+.. -
T Consensus 163 ~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~---------------------- 217 (272)
T 3u4t_A 163 SSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K---------------------- 217 (272)
T ss_dssp HHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H----------------------
T ss_pred HHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h----------------------
Confidence 55555544 2233 2233334444444443 4444444444333111111100 0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCC
Q 004425 627 SPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGM 682 (754)
Q Consensus 627 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 682 (754)
..-..+|..+...+...|+.++|...++++++++|+++.++..+..+....+.
T Consensus 218 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 218 ---DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred ---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 00124677788888899999999999999999999999888888777665543
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=3.6e-12 Score=125.56 Aligned_cols=219 Identities=10% Similarity=-0.042 Sum_probs=136.7
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhccCC-CChhHHHHHHHHHHH
Q 004425 468 SRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAK----CGSIDGAFQIFKGISD-RDIVSWNAMLSAYAL 542 (754)
Q Consensus 468 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 542 (754)
..+...+...|++++|...+++..+. .+...+..+...|.. .|++++|...|++..+ .+..++..+...|..
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 33333444444444444444444442 133344445555555 5666666666655432 244556666666666
Q ss_pred ----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh-
Q 004425 543 ----HGLGKGALLLFEEMKREGFAPDDISILGVLQACIY----SGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR- 613 (754)
Q Consensus 543 ----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 613 (754)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|..+|++..+ .+ +...+..+..+|..
T Consensus 87 g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 87 GQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAG 159 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcC
Confidence 667777777777666643 45566666666666 6777777777777665 23 34455666666666
Q ss_pred ---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh----cCC
Q 004425 614 ---AGRLSEAMNLINSSPFSESPLLWRTLVSVSKL----MANSKFSILASKRLLDLEPKDAGSFILVSNMYAG----QGM 682 (754)
Q Consensus 614 ---~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~ 682 (754)
.+++++|++.+++.-...++..+..+...+.. .++.++|...++++++.+| +..+..++.+|.. .|+
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~ 237 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRN 237 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccC
Confidence 67777777777655222456667777777777 7788888888888777755 5677778888887 788
Q ss_pred chHHHHHHHHHhhCCC
Q 004425 683 LDEAAKVRTTMNDLRL 698 (754)
Q Consensus 683 ~~~a~~~~~~m~~~~~ 698 (754)
+++|.+.+++..+.+.
T Consensus 238 ~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 238 EKQAIENFKKGCKLGA 253 (273)
T ss_dssp STTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 8888888877766543
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=7e-13 Score=135.89 Aligned_cols=243 Identities=11% Similarity=0.060 Sum_probs=188.1
Q ss_pred hhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccc-hHHHHHHHHHHHHhCCCCchhHHHHH
Q 004425 428 AEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPD-PVTFSRLLSLSASQAC-LVRGRSLHAYSIKTGYAADVIVGNAL 505 (754)
Q Consensus 428 ~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 505 (754)
..|+.+...+.. .|++++|+..|++.++. .|+ ...|..+..++...|+ +++|...++++++.. +-+...|..+
T Consensus 98 ~a~~~lg~~~~~--~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 98 DVYDYFRAVLQR--DERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHH--TCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHH--CCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 346666666666 78888888888888875 454 4567777777888886 888888888888765 4467788888
Q ss_pred HHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-cCC
Q 004425 506 ITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIY-SGL 580 (754)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~ 580 (754)
..+|.+.|++++|+..|+++.+ .+..+|..+..++...|++++|+..|+++++ +.|+ ...|+.+..++.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCc
Confidence 8888889999999999988753 4667888899999999999999999999998 5564 4578888888888 566
Q ss_pred HHHH-----HHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC----
Q 004425 581 SEGG-----ICLFNEIEQIYGLRPI-LEHFACMVDLLGRAG--RLSEAMNLINSSPFSE-SPLLWRTLVSVSKLMA---- 647 (754)
Q Consensus 581 ~~~a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g---- 647 (754)
.++| +..|++... +.|+ ...|..+..+|...| ++++|+++++++...| +...+..++..+...|
T Consensus 251 ~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 477887765 3444 567888888888888 6888988888774445 5778888888887764
Q ss_pred ----C-hHHHHHHHHHh-hccCCCCcchHHHHHHHHHhc
Q 004425 648 ----N-SKFSILASKRL-LDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 648 ----~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 680 (754)
+ .++|+.+++++ .+++|.....|..++..+..+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58899999999 899999888888887776543
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=1.7e-12 Score=137.57 Aligned_cols=374 Identities=10% Similarity=0.004 Sum_probs=194.5
Q ss_pred HHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh---HHHHHHHHccCCCCchhHHHHHHHHHhcC----
Q 004425 268 SVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMS---EEAERMFDAISERNLISWTALISGYVRSG---- 340 (754)
Q Consensus 268 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g---- 340 (754)
..+.+.|++++|.++|....+.|. ...+..|...|...|+. ++|.+.|++..+.+...+..+...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 344455566666666666555542 22223344444445555 66666666665555555555555444444
Q ss_pred -ChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCCh---HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHH
Q 004425 341 -HGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNL---ELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSAR 416 (754)
Q Consensus 341 -~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 416 (754)
++++|+..|++..+.|... .+..+-..|...+.. ..+.+.+......|. ......|...|...+.+++
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~-- 159 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQ-- 159 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGG--
T ss_pred cCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCccc--
Confidence 5667777777776654322 333444444333322 223333333333332 3334444444544442211
Q ss_pred HHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc---chHHHHHHHHHHHHh
Q 004425 417 MLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQA---CLVRGRSLHAYSIKT 493 (754)
Q Consensus 417 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~ 493 (754)
..+++..+++..... .|+ .+..+...+...| +.++|...+....+.
T Consensus 160 ---------------------------~~~~a~~~~~~a~~~--~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~ 208 (452)
T 3e4b_A 160 ---------------------------HLDDVERICKAALNT--TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSR 208 (452)
T ss_dssp ---------------------------GHHHHHHHHHHHTTT--CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred ---------------------------CHHHHHHHHHHHHcC--CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC
Confidence 222223333222211 222 4445555555555 666666666666665
Q ss_pred CCCCchhHHHHHHHHHHhc----CCHHHHHHHHhccCCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHcCCCCCHH
Q 004425 494 GYAADVIVGNALITMYAKC----GSIDGAFQIFKGISDRDIVSWNAMLSA-Y--ALHGLGKGALLLFEEMKREGFAPDDI 566 (754)
Q Consensus 494 ~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~ 566 (754)
| .++...+..|..+|... +++++|...|+.....+...+..|... | ...+++++|+..|++..+.| +..
T Consensus 209 g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~ 284 (452)
T 3e4b_A 209 G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR 284 (452)
T ss_dssp T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH
T ss_pred C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 5 23333334555555443 577777777776663345566666665 3 45678888888888888765 555
Q ss_pred HHHHHHHHHHhcC-----CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHH
Q 004425 567 SILGVLQACIYSG-----LSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR----AGRLSEAMNLINSSPFSESPLLWR 637 (754)
Q Consensus 567 t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~ 637 (754)
.+..+...|. .| ++++|..+|++.. .-+...+..|..+|.. ..+.++|.+++++.....++....
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~ 358 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADF 358 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHH
Confidence 6666666666 44 8888888887763 3455666777777765 348888888888764344555666
Q ss_pred HHHHHHHh----cCChHHHHHHHHHhhccCCCCcchHHHHHHHHH--hcCCchHHHHHHHHHhh
Q 004425 638 TLVSVSKL----MANSKFSILASKRLLDLEPKDAGSFILVSNMYA--GQGMLDEAAKVRTTMND 695 (754)
Q Consensus 638 ~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~ 695 (754)
.|...|.. ..|.++|...++++.+..+.+ +...+..+.. ..++.++|.++.++.+.
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 66666653 358889999998888876543 3444444433 23456666666665543
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=3.2e-13 Score=130.51 Aligned_cols=203 Identities=10% Similarity=0.067 Sum_probs=87.3
Q ss_pred HHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCCh
Q 004425 470 LLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLG 546 (754)
Q Consensus 470 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 546 (754)
+...+...|+++.|...++++.+.. +.+...+..+...|.+.|++++|...|+++.+ .+...|..+...|...|++
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 107 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMY 107 (243)
T ss_dssp -------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccH
Confidence 3333344444444444444443321 22333444444444444444444444444321 2334444455555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHh
Q 004425 547 KGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINS 626 (754)
Q Consensus 547 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (754)
++|+..++++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+..++.++.+.|++++|.+.+++
T Consensus 108 ~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 108 KEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAA 184 (243)
T ss_dssp HHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555555422 112334444445555555555555555555441 122333444455555555555555555443
Q ss_pred C-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHH
Q 004425 627 S-PF-SESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNM 676 (754)
Q Consensus 627 ~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 676 (754)
+ .. +.+..+|..+..++...|+.++|...++++++++|+++..+..++.+
T Consensus 185 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 185 VTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 3 11 12344555555555555555555555555555555555544444433
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=9e-13 Score=128.16 Aligned_cols=195 Identities=12% Similarity=-0.055 Sum_probs=137.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 004425 499 VIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQA 574 (754)
Q Consensus 499 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 574 (754)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 34455566666666777777766666532 34556677777777777777777777777763 33 44566667777
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 004425 575 CIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKF 651 (754)
Q Consensus 575 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 651 (754)
+...|++++|..+++++.. .+..|+ ...+..++.+|.+.|++++|.+.++++ ...| +...|..+...+...|+.++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777754 224443 456667777777777777777777654 2223 57777788888888888888
Q ss_pred HHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 652 SILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 652 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
|...++++++..|++...+..++.+|...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888877654
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=1.1e-12 Score=134.41 Aligned_cols=223 Identities=8% Similarity=0.018 Sum_probs=191.4
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhccCC---CChhHHHHHHHHH
Q 004425 465 VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGS-IDGAFQIFKGISD---RDIVSWNAMLSAY 540 (754)
Q Consensus 465 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 540 (754)
..|..+...+...|++++|...++++++.. +-+...|+.+..+|.+.|+ +++|+..|+++.+ .+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456777778889999999999999999876 4567889999999999997 9999999998854 4678999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh-cCCHH
Q 004425 541 ALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR-AGRLS 618 (754)
Q Consensus 541 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~ 618 (754)
...|++++|+..|+++++ +.|+. ..|..+..++...|++++|+..|+++.+. -+-+...|..+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999 56754 68999999999999999999999999872 23356789999999999 67667
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcC--------
Q 004425 619 EA-----MNLINSS-PFSE-SPLLWRTLVSVSKLMA--NSKFSILASKRLLDLEPKDAGSFILVSNMYAGQG-------- 681 (754)
Q Consensus 619 ~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 681 (754)
+| ++.+++. ...| +...|..+...+...| +.++|...++++ +.+|+++.++..|+++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4667654 3445 6889999999998888 689999999998 999999999999999999975
Q ss_pred -CchHHHHHHHHH
Q 004425 682 -MLDEAAKVRTTM 693 (754)
Q Consensus 682 -~~~~a~~~~~~m 693 (754)
..++|.++++++
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 358999999987
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=3.8e-13 Score=129.93 Aligned_cols=196 Identities=10% Similarity=0.068 Sum_probs=155.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 004425 497 ADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVL 572 (754)
Q Consensus 497 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll 572 (754)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..++++.+. .| +...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 3556677788889999999999999998854 45678899999999999999999999999984 45 456888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChH
Q 004425 573 QACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PF-SESPLLWRTLVSVSKLMANSK 650 (754)
Q Consensus 573 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~ 650 (754)
..+...|++++|..+++++.+. .+.+...+..++.++.+.|++++|.+.++++ .. +.+...|..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999873 3345678889999999999999999999876 22 346889999999999999999
Q ss_pred HHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 651 FSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 651 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+|...++++++..|+++..+..++.+|...|++++|...++++.+.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999988664
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=3.5e-12 Score=124.00 Aligned_cols=204 Identities=10% Similarity=-0.030 Sum_probs=153.9
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHH
Q 004425 466 TFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYAL 542 (754)
Q Consensus 466 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 542 (754)
.+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+...|..+...|..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence 44455555566666666666666666543 33556667777777777888888877776642 356677888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHH
Q 004425 543 HGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAM 621 (754)
Q Consensus 543 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 621 (754)
.|++++|+++++++.+.+..|+. ..+..+...+...|++++|..+++++.+. .+.+...+..++.+|.+.|++++|.
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888774445644 47777888888899999999999888773 2334677888999999999999999
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHH
Q 004425 622 NLINSS-PFS-ESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 622 ~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 672 (754)
+.++++ ... .+...|..+...+...|+.++|...+++++++.|+++.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 998865 333 467888889999999999999999999999999998765543
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=1.5e-12 Score=119.72 Aligned_cols=164 Identities=14% Similarity=0.156 Sum_probs=137.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHH
Q 004425 529 DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACM 607 (754)
Q Consensus 529 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 607 (754)
+...|..+...|...|++++|++.|++.++ +.|+. .++..+..++...|++++|...++..... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 456788888888888999999999988888 55654 57888888888899999999988888662 33345567778
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchH
Q 004425 608 VDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDE 685 (754)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 685 (754)
...+...+++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++.+|..+|.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88888899999999888765 2234 688899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC
Q 004425 686 AAKVRTTMNDL 696 (754)
Q Consensus 686 a~~~~~~m~~~ 696 (754)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999987653
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=1.4e-12 Score=124.08 Aligned_cols=195 Identities=11% Similarity=0.019 Sum_probs=144.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 004425 498 DVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQ 573 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 573 (754)
+...+..+...|...|++++|...|+.+.+ .+...|..+...|...|++++|+..++++.+. .| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 345566666777777777777777776532 34567777777778888888888888887773 34 4456777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 004425 574 ACIYS-GLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANS 649 (754)
Q Consensus 574 a~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 649 (754)
.+... |++++|..+++++.+ .+..|+ ...+..++.++...|++++|++.++++ ...| +...|..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 77888 888888888887765 233333 456777788888888888888887755 2223 577788888888888888
Q ss_pred HHHHHHHHHhhccCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 650 KFSILASKRLLDLEP-KDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 650 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++|...++++++..| +++..+..++.++...|+.++|...++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 888888888888888 8888888888888888888888888887765
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.2e-11 Score=121.69 Aligned_cols=227 Identities=13% Similarity=-0.032 Sum_probs=190.9
Q ss_pred ChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----ccchHHHHHHHHHHHHhCCCCchhH
Q 004425 426 YTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSAS----QACLVRGRSLHAYSIKTGYAADVIV 501 (754)
Q Consensus 426 ~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 501 (754)
+...+..+...|.. .|++++|+..|++..+. -+...+..+...+.. .+++++|...+++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~--~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYK--EKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHh--CCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 44556666667777 88999999999988873 344667777788888 999999999999999886 6788
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHhccCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004425 502 GNALITMYAK----CGSIDGAFQIFKGISD-RDIVSWNAMLSAYAL----HGLGKGALLLFEEMKREGFAPDDISILGVL 572 (754)
Q Consensus 502 ~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 572 (754)
+..+...|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 8889999999 9999999999998754 467788999999999 999999999999999865 566777788
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004425 573 QACIY----SGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR----AGRLSEAMNLINSSPFSESPLLWRTLVSVSK 644 (754)
Q Consensus 573 ~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 644 (754)
..+.. .+++++|..+|++..+ .+ +...+..+..+|.. .+++++|++.+++.....++..+..+...+.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACD-LK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88888 8999999999999987 33 45678889999999 9999999999987632345788888999998
Q ss_pred h----cCChHHHHHHHHHhhccCCCCc
Q 004425 645 L----MANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 645 ~----~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
. .++.++|...++++++++|+++
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 8 8999999999999999998754
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=3.2e-12 Score=135.38 Aligned_cols=344 Identities=12% Similarity=-0.009 Sum_probs=226.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCCh---HHHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 004425 332 LISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNL---ELGLQLHGFAIKHGYLSDVRLGTALVDIYAK 408 (754)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 408 (754)
+...+.+.|++++|+++|++..+.|- ...+..+-..+...|+. ++|...|+...+. +...+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 56677889999999999999988763 33334444445556777 8999999888854 45556666665555
Q ss_pred CC-----CHHHHHHHHhcCC-CCChhhHHHHHHHHhhhhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc
Q 004425 409 GG-----DLKSARMLLDGFS-CKYTAEFNAILSGFMEKIADDE---EDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQAC 479 (754)
Q Consensus 409 ~g-----~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~---~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 479 (754)
.| +.++|...|++.. ..+...+..|...|.. .+.. .++.+.+......|. ......+...+...+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~--~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQ--YPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGT 156 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHH--CGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTC
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCC
Confidence 55 6788988888765 3445577778887777 4443 345555555555543 3344455566666664
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhccCC---CChhHHHHHHHHHHHc----CChHHH
Q 004425 480 LVRGRSLHAYSIKTGYAADVIVGNALITMYAKCG---SIDGAFQIFKGISD---RDIVSWNAMLSAYALH----GLGKGA 549 (754)
Q Consensus 480 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A 549 (754)
++.+........+.-...++..+..|..+|.+.| +.++|...|+...+ ++...+..|...|... +++++|
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 4443333333333222334558888999999999 89999999987753 3444446677777554 689999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcC-----CHHHHH
Q 004425 550 LLLFEEMKREGFAPDDISILGVLQA-C--IYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAG-----RLSEAM 621 (754)
Q Consensus 550 ~~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~ 621 (754)
+..|++.. .| +...+..+... + ...+++++|..+|++..+ .| +...+..|..+|. .| ++++|+
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 99999987 32 44555566655 3 468899999999999887 35 5667778888887 55 999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh----cCCchHHHHHHHHH
Q 004425 622 NLINSSPFSESPLLWRTLVSVSKL----MANSKFSILASKRLLDLEPKDAGSFILVSNMYAG----QGMLDEAAKVRTTM 693 (754)
Q Consensus 622 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m 693 (754)
++|++.. ..++..+..|...|.. ..|.++|...++++.+ +.++.+...|+.+|.. ..+.++|..++++.
T Consensus 308 ~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 308 AHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 9999887 6688888888877766 3499999999999887 4567789999999985 45899999999998
Q ss_pred hhCCCc
Q 004425 694 NDLRLS 699 (754)
Q Consensus 694 ~~~~~~ 699 (754)
.+.|..
T Consensus 385 ~~~g~~ 390 (452)
T 3e4b_A 385 KAQDTP 390 (452)
T ss_dssp HTTCCH
T ss_pred HHCCCH
Confidence 887753
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=5.7e-12 Score=119.89 Aligned_cols=205 Identities=10% Similarity=-0.045 Sum_probs=145.4
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHH
Q 004425 466 TFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYAL 542 (754)
Q Consensus 466 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 542 (754)
.+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...|+++.+ .+..+|..+...|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34444455555555555555555555443 23455566666677777777777777766532 355677778888888
Q ss_pred c-CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHH
Q 004425 543 H-GLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEA 620 (754)
Q Consensus 543 ~-g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 620 (754)
. |++++|+..++++.+.+..|+. ..+..+..++...|++++|..+++++.+. .+.+...+..++.++.+.|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence 8 8888888888888874344543 56777788888888888888888888762 233466777888888888888888
Q ss_pred HHHHHhC-CC-C-CCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHH
Q 004425 621 MNLINSS-PF-S-ESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 621 ~~~~~~~-~~-~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
.+.++++ .. + .+...|..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 8888765 22 2 4577777777888889999999999999999999988766554
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=4.6e-13 Score=142.88 Aligned_cols=192 Identities=8% Similarity=-0.049 Sum_probs=150.5
Q ss_pred chhHHHHHHHHHHhcCCH-HHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004425 498 DVIVGNALITMYAKCGSI-DGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQ 573 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 573 (754)
+...+..+...|...|++ ++|.+.|++..+ .+...|..+..+|...|++++|+..|++.++ +.|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 455556666666666666 666666665532 3456777788888888888888888888887 5577677777777
Q ss_pred HHHhc---------CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhc--------CCHHHHHHHHHhC-CCCC----
Q 004425 574 ACIYS---------GLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRA--------GRLSEAMNLINSS-PFSE---- 631 (754)
Q Consensus 574 a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p---- 631 (754)
++... |++++|+..|+++.+. .+.+...|..+..+|... |++++|++.+++. ...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88787 8888888888888762 233456777888888887 8888888888765 2234
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 632 SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 632 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
++..|..+..++...|++++|...++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999999999999999999999999765443
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=3.5e-12 Score=133.84 Aligned_cols=127 Identities=10% Similarity=0.006 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI----LEHFACMVDLLGRAGRLSEAMNLINSS----PFSES----PL 634 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~ 634 (754)
++..+...+...|++++|..++++..+...-.++ ...+..++.+|...|++++|.+.+++. +..++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 3444455555555555555555554432111111 124445555555555555555555432 00111 33
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhccCCCC------cchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 635 LWRTLVSVSKLMANSKFSILASKRLLDLEPKD------AGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 635 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|...+++.
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44455555555555555555555555543332 334555555555555555555555554
No 57
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=1.9e-11 Score=120.31 Aligned_cols=228 Identities=9% Similarity=-0.068 Sum_probs=180.5
Q ss_pred hhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCC--CChh----hHHHHH
Q 004425 361 SSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSC--KYTA----EFNAIL 434 (754)
Q Consensus 361 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li 434 (754)
...+......+...|+++.|...++.+++.. +.+...+..+...|...|++++|...|++... .+.. .|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3445566777889999999999999999864 33556888899999999999999999987753 2222 378888
Q ss_pred HHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 004425 435 SGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGS 514 (754)
Q Consensus 435 ~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 514 (754)
..+.. .|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...++
T Consensus 82 ~~~~~--~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 82 KILMK--KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHH--TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHH--cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHH
Confidence 89999 999999999999999863 2344788899999999999999999999998763 4466777777734444569
Q ss_pred HHHHHHHHhccCC---CChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHcC-CCCCH------HHHHHHHHHHHhcCCH
Q 004425 515 IDGAFQIFKGISD---RDIVSWNAMLSAYALHGL---GKGALLLFEEMKREG-FAPDD------ISILGVLQACIYSGLS 581 (754)
Q Consensus 515 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~ 581 (754)
+++|...|+++.+ .+...|..+...+...|+ +++|+..|++..+.. -.|+. ..|..+...+...|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 9999999998853 346788888889988898 888999999988632 12432 4667777788888888
Q ss_pred HHHHHHHHHHHH
Q 004425 582 EGGICLFNEIEQ 593 (754)
Q Consensus 582 ~~a~~~~~~~~~ 593 (754)
++|..+|+++.+
T Consensus 238 ~~A~~~~~~al~ 249 (272)
T 3u4t_A 238 VKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888888866
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=2e-12 Score=136.05 Aligned_cols=257 Identities=12% Similarity=0.001 Sum_probs=179.1
Q ss_pred HHHhhhhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhcccchHHHHHHHHHHHHh----CC-CCchhHHHH
Q 004425 435 SGFMEKIADDEEDVMVLFSQQRLAGMEPDP-----VTFSRLLSLSASQACLVRGRSLHAYSIKT----GY-AADVIVGNA 504 (754)
Q Consensus 435 ~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 504 (754)
..+.. .|++++|+..|++..+. .|+. ..+..+...+...|+++.|...++++.+. +. +.....+..
T Consensus 56 ~~~~~--~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 56 ERLCN--AGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHH--TTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHH--hCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 34444 66666666666666664 2332 34556666666777777777777666543 11 223455667
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC-----C----ChhHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHH
Q 004425 505 LITMYAKCGSIDGAFQIFKGISD-----R----DIVSWNAMLSAYALHGL-----------------GKGALLLFEEMKR 558 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~ 558 (754)
+...|...|++++|...|++..+ . ...+|..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 77777888888888887776532 1 23467777888888888 8888888877654
Q ss_pred c----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHhhcCCHHHHHHHHHhC--
Q 004425 559 E----GFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI----LEHFACMVDLLGRAGRLSEAMNLINSS-- 627 (754)
Q Consensus 559 ~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 627 (754)
. +-.|.. .++..+...+...|++++|..++++..+...-.++ ...+..++.+|...|++++|.+.+++.
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 112222 36777788888899999999998887663211112 236778888999999999999888754
Q ss_pred --CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC------cchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 628 --PFSE----SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD------AGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 628 --~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+... ...++..+...+...|++++|...+++++++.++. ...+..++.+|...|++++|...+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1111 25677888889999999999999999999875543 34888999999999999999999988754
No 59
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.44 E-value=7.3e-12 Score=118.30 Aligned_cols=111 Identities=16% Similarity=0.068 Sum_probs=45.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHH
Q 004425 544 GLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMN 622 (754)
Q Consensus 544 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 622 (754)
|++++|+..|++.++ +.|+. ..+..+..++...|++++|+..|+++.+ .. .+...+..+..+|...|++++|++
T Consensus 98 g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~--~~~~~~~~la~~~~~~g~~~~A~~ 172 (217)
T 2pl2_A 98 GYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALA-LE--DTPEIRSALAELYLSMGRLDEALA 172 (217)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cc--cchHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555555544 23332 3444444455555555555555555544 22 344444455555555555555555
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 004425 623 LINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRL 659 (754)
Q Consensus 623 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 659 (754)
.+++. ...| ++..+..+...+...|+.++|...++++
T Consensus 173 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 173 QYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55433 1122 3445555555555555555555555443
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=6.1e-12 Score=127.99 Aligned_cols=258 Identities=13% Similarity=0.073 Sum_probs=187.8
Q ss_pred HHHhhhhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhcccchHHHHHHHHHHHHh----CCC-CchhHHHH
Q 004425 435 SGFMEKIADDEEDVMVLFSQQRLAGMEPD-----PVTFSRLLSLSASQACLVRGRSLHAYSIKT----GYA-ADVIVGNA 504 (754)
Q Consensus 435 ~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 504 (754)
..+.. .|++++|+..|++..+.. |+ ...+..+...+...|+++.|...++.+.+. +.. ....++..
T Consensus 13 ~~~~~--~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 13 ERLCK--SGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHH--TTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH--hccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 34445 777777777777777652 33 245666677777778888887777776542 211 22556677
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHHHHH
Q 004425 505 LITMYAKCGSIDGAFQIFKGISD-----RD----IVSWNAMLSAYALHGL--------------------GKGALLLFEE 555 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~ 555 (754)
+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|+..+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 78888888888888888877642 22 2367778888888888 8888888887
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHhhcCCHHHHHHHHHh
Q 004425 556 MKRE----GFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI----LEHFACMVDLLGRAGRLSEAMNLINS 626 (754)
Q Consensus 556 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (754)
..+. +..|. ...+..+...+...|++++|..++++..+...-.++ ...+..++.+|...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6642 21222 236777888889999999999999987653211122 23678889999999999999998876
Q ss_pred C----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC------cchHHHHHHHHHhcCCchHHHHHHHH
Q 004425 627 S----PFSES----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD------AGSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 627 ~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
. +..++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4 11122 5677888899999999999999999999876553 34788999999999999999999998
Q ss_pred HhhC
Q 004425 693 MNDL 696 (754)
Q Consensus 693 m~~~ 696 (754)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8653
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.42 E-value=1.2e-11 Score=121.85 Aligned_cols=239 Identities=10% Similarity=-0.082 Sum_probs=140.2
Q ss_pred cCChhHHHHHHHHhHhcCcc---cChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHH
Q 004425 339 SGHGGKAINGFLEFLDLGIC---CDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSA 415 (754)
Q Consensus 339 ~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 415 (754)
.|++++|+..|+++.+.... .+..++..+...+...|+++.|...++.+.+.. +.+...+..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 45566666666666654211 123445555556666666666666666666643 23455666666667777777777
Q ss_pred HHHHhcCC---CCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 004425 416 RMLLDGFS---CKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIK 492 (754)
Q Consensus 416 ~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 492 (754)
...|++.. +.+...|..+...|.. .|++++|+..|+++.+. .|+.......+..+...|++++|...+.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYY--GGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHH--hccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 66666554 3345566667777777 77777777777777765 45544444444555666777777777776666
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 004425 493 TGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRD-------IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD 565 (754)
Q Consensus 493 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 565 (754)
.. +++...+ .++..+...++.++|...++...+.+ ...|..+...|...|++++|...|++.++ ..|+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh
Confidence 53 2333333 35556666666777777776665432 34566666666677777777777776666 34432
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 004425 566 ISILGVLQACIYSGLSEGGICLF 588 (754)
Q Consensus 566 ~t~~~ll~a~~~~g~~~~a~~~~ 588 (754)
. .....++...|++++|++.+
T Consensus 249 ~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C--HHHHHHHHHHHHHHHC----
T ss_pred H--HHHHHHHHHHHHHHhhHHHH
Confidence 1 11233444555555555544
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.40 E-value=3.7e-12 Score=141.13 Aligned_cols=160 Identities=13% Similarity=0.102 Sum_probs=135.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHH
Q 004425 530 IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACM 607 (754)
Q Consensus 530 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 607 (754)
..+|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++.+.|++++|+..|++..+ +.|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 45678888888888888888888888888 56764 5788888888888888888888888866 3444 5678888
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchH
Q 004425 608 VDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDE 685 (754)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 685 (754)
..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888888765 3445 688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 004425 686 AAKVRTTMN 694 (754)
Q Consensus 686 a~~~~~~m~ 694 (754)
|.+.+++..
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888774
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.40 E-value=2.5e-12 Score=134.91 Aligned_cols=153 Identities=10% Similarity=0.012 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC----cc
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGF-APD----DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI----LE 602 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 602 (754)
+|..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..++++......-.++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 566677777777777777777777664211 111 126667777788888888888888776552111111 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC------Ccc
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS----PFSES----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPK------DAG 668 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 668 (754)
++..++.+|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+. ...
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 6677888888888888888887654 11122 567788889999999999999999999887433 356
Q ss_pred hHHHHHHHHHhcCCch
Q 004425 669 SFILVSNMYAGQGMLD 684 (754)
Q Consensus 669 ~~~~l~~~~~~~g~~~ 684 (754)
++..++.+|...|+..
T Consensus 349 ~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 349 ARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhHhH
Confidence 7888999999988764
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.37 E-value=2.4e-09 Score=117.06 Aligned_cols=413 Identities=9% Similarity=0.005 Sum_probs=253.6
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCC---chHHHHHHHHHHHhc-CCCChhHHH
Q 004425 224 DVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLG---VEEGKQLHGLAVKFG-VVREISVGN 299 (754)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~~~ 299 (754)
|..+|..+|..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ .+.+.++|+..+... ..|++..|.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 6667777777777777777777777777765 23334445555666566666 777777777776653 135666676
Q ss_pred HHHHHHHhcCCh--------HHHHHHHHccC------CC-CchhHHHHHHHHHh---------cCChhHHHHHHHHhHhc
Q 004425 300 AIVTMYGKHGMS--------EEAERMFDAIS------ER-NLISWTALISGYVR---------SGHGGKAINGFLEFLDL 355 (754)
Q Consensus 300 ~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~ 355 (754)
..+....+.++. +...++|+... ++ +...|...+.-... +++++.+..+|++.+..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 666655554433 22335555422 12 23456655554332 23345566666665532
Q ss_pred CcccChhhHH---HHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhc-------CCC-
Q 004425 356 GICCDSSCLA---TVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDG-------FSC- 424 (754)
Q Consensus 356 g~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~~- 424 (754)
....-..+|. .+.... +. ..+..++.+. ...++.|...+.. +..
T Consensus 224 P~~~~~~~w~~Y~~fe~~~---~~-~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDV---NQ-LTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHH---CT-TTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred ccHHHHHHHHHHHHHHHhc---Cc-chHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhc
Confidence 1110011111 111111 00 0011111110 0111222222211 110
Q ss_pred --C-------------C------hhhHHHHHHHHhhhhcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 004425 425 --K-------------Y------TAEFNAILSGFMEKIAD-------DEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSAS 476 (754)
Q Consensus 425 --~-------------~------~~~~~~li~~~~~~~~~-------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 476 (754)
. + ...|...+.---. .+ ..+.+..+|++.+.. +.-+...|.....-+..
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~--~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~ 355 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESD--NKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGE 355 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHT--CTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHH
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHh--CCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHh
Confidence 0 0 1234444432222 22 134456678887765 23355677777777778
Q ss_pred ccchHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-------------CC------------h
Q 004425 477 QACLVRGR-SLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD-------------RD------------I 530 (754)
Q Consensus 477 ~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~ 530 (754)
.|+.+.|. .+++.+... ++.+...+-.++....+.|+++.|..+|+.+.+ |+ .
T Consensus 356 ~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp HSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 88888896 999999874 456777788889999999999999999998753 31 2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIY-SGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
..|-..+....+.|..+.|..+|.+.++.-..+....|......-.+ .++++.|.++|+...+. ++-+...+...++
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHH
Confidence 36888888888889999999999999885111122333332222223 35599999999999885 3344556778999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc
Q 004425 610 LLGRAGRLSEAMNLINSS-PFSE----SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG 668 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 668 (754)
.+...|+.+.|..+|++. ...| ....|..++..-..+|+.+.+..+.+++.+..|+++.
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 999999999999999975 2223 3578999999999999999999999999999999653
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=9.4e-12 Score=129.39 Aligned_cols=223 Identities=8% Similarity=-0.031 Sum_probs=145.8
Q ss_pred HHHhcccchHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC-----hhHHHHH
Q 004425 472 SLSASQACLVRGRSLHAYSIKT----GYAA-DVIVGNALITMYAKCGSIDGAFQIFKGISD-----RD-----IVSWNAM 536 (754)
Q Consensus 472 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l 536 (754)
..+...|++++|...+.++.+. +-.+ ...++..+...|...|++++|...+++..+ ++ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3455666677776666666543 1111 235566677777777777777777765532 11 2467777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---CC-CCCccHHHHH
Q 004425 537 LSAYALHGLGKGALLLFEEMKREGFA-PDD----ISILGVLQACIYSGLSEGGICLFNEIEQIY---GL-RPILEHFACM 607 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~~~~~l 607 (754)
...|...|++++|+..|++.++.... ++. .++..+...|...|++++|..++++..+.. +. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 77888888888888888777642111 111 367777778888888888888888776521 22 2224567778
Q ss_pred HHHHhhcCCHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHhcCC---hHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 608 VDLLGRAGRLSEAMNLINSS----PF--SE-SPLLWRTLVSVSKLMAN---SKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~----~~--~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
+.+|.+.|++++|.+.+++. +. .| ....+..+...+...|+ .++|...+++. ...|.....+..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 88888888888888887654 11 12 12234556666777777 77777777766 33344456788899999
Q ss_pred HhcCCchHHHHHHHHHhh
Q 004425 678 AGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 678 ~~~g~~~~a~~~~~~m~~ 695 (754)
...|++++|...+++..+
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999888754
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=1.6e-11 Score=112.67 Aligned_cols=166 Identities=11% Similarity=0.056 Sum_probs=140.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 004425 498 DVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQ 573 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 573 (754)
+..+|..+...|.+.|++++|...|++..+ .+..+|..+...|.+.|++++|+..+++.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 567788899999999999999999988753 45678889999999999999999999999884 454 456777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 004425 574 ACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKF 651 (754)
Q Consensus 574 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 651 (754)
.+...++++.|...+.+.... .+.+...+..++.+|.+.|++++|++.+++. ...| ++.+|..+..++...|+.++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888999999999999998762 3345677889999999999999999999865 3344 68899999999999999999
Q ss_pred HHHHHHHhhccCCCCc
Q 004425 652 SILASKRLLDLEPKDA 667 (754)
Q Consensus 652 a~~~~~~~~~~~p~~~ 667 (754)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999864
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.33 E-value=1.6e-11 Score=129.06 Aligned_cols=269 Identities=12% Similarity=0.018 Sum_probs=165.5
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHHhCCCcc---hhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhh
Q 004425 364 LATVIDGCSVCSNLELGLQLHGFAIKHGYLSD---VRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEK 440 (754)
Q Consensus 364 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 440 (754)
+..+...+...|+++.|...++.+++.+.... ..++..+...|...|++++|...|+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~-------------------- 110 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHK-------------------- 110 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHH--------------------
Confidence 33344455666777777777766666532211 1345555555555555555555544
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhcccchHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHH
Q 004425 441 IADDEEDVMVLFSQQRLA----GMEP-DPVTFSRLLSLSASQACLVRGRSLHAYSIKT----GY-AADVIVGNALITMYA 510 (754)
Q Consensus 441 ~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~ 510 (754)
+..+. +-.| ....+..+...+...|++++|...+.++.+. +- +....++..+...|.
T Consensus 111 -------------~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 111 -------------HDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp -------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 33221 1011 1134444445555555555555555554432 11 112345555666666
Q ss_pred hcCC-----------------HHHHHHHHhccCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-C
Q 004425 511 KCGS-----------------IDGAFQIFKGISD-----R----DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFA-P 563 (754)
Q Consensus 511 ~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p 563 (754)
..|+ +++|...+++..+ . ...+|..+...|...|++++|+..+++..+.... +
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 6666 6666666655421 1 1236777788888888888888888887752111 1
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHhhcCCHHHHHHHHHhC-------C
Q 004425 564 D----DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI----LEHFACMVDLLGRAGRLSEAMNLINSS-------P 628 (754)
Q Consensus 564 ~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~ 628 (754)
+ ..++..+...+...|++++|..++++......-..+ ...+..++.+|...|++++|.+.+++. +
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 2 126777888888899999999988887653211111 356778888899999999999888765 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 629 FSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 629 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
..+ ...++..+...+...|+.++|...+++++++.+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 111 2457788889999999999999999999998776
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.33 E-value=4.5e-09 Score=115.00 Aligned_cols=434 Identities=7% Similarity=-0.045 Sum_probs=272.1
Q ss_pred hhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC---hHHHHHH
Q 004425 241 SEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGM---SEEAERM 317 (754)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~ 317 (754)
..+.+..|++-...+. -|..+|..++..+.+.+.++.+..+++.++.. ++.....|...+..-.+.|. ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 4445545555544432 37778888888888888888888888888776 45667777777777777777 8888888
Q ss_pred HHccCC-----CCchhHHHHHHHHHhcCCh----hH----HHHHHHHhHh-cCc-ccCh-hhHHHHHHHhc---------
Q 004425 318 FDAISE-----RNLISWTALISGYVRSGHG----GK----AINGFLEFLD-LGI-CCDS-SCLATVIDGCS--------- 372 (754)
Q Consensus 318 ~~~~~~-----~~~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~p~~-~~~~~ll~~~~--------- 372 (754)
|++... +++..|...+.-..+.++. ++ ..++|+..+. .|. .|+. ..|...+.-..
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 887653 5666777776655554443 22 3355555443 344 4433 33433333221
Q ss_pred ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHH
Q 004425 373 VCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLF 452 (754)
Q Consensus 373 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~ 452 (754)
..++++.+..+|..++......-..+|......-...+. ..+.+++.+. ..+++.|...+
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-------------------~~~y~~Ar~~~ 265 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-------------------SAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-------------------HHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-------------------hHHHHHHHHHH
Confidence 122345566666665532111112222221111000000 0011111110 22344455555
Q ss_pred HHHHH--cCCC---------------C-----C---HHHHHHHHHHHhccc-------chHHHHHHHHHHHHhCCCCchh
Q 004425 453 SQQRL--AGME---------------P-----D---PVTFSRLLSLSASQA-------CLVRGRSLHAYSIKTGYAADVI 500 (754)
Q Consensus 453 ~~m~~--~g~~---------------p-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~ 500 (754)
.++.. .++. | + ...|...+.---..+ ..+.+..++++++.. ++-+..
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~ 344 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPE 344 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHH
Confidence 44322 1111 1 0 023333333222221 134456778888775 355788
Q ss_pred HHHHHHHHHHhcCCHHHHH-HHHhccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---------CCC---
Q 004425 501 VGNALITMYAKCGSIDGAF-QIFKGISD--R-DIVSWNAMLSAYALHGLGKGALLLFEEMKREGF---------APD--- 564 (754)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~--- 564 (754)
+|-..+..+...|+.++|. .+|++... | +...|-..+...-+.|++++|.++|+++++... .|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 8888888899999999996 99988753 3 455677888888999999999999999986310 142
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcC-CHHHHHHHHHhC--CCCCC
Q 004425 565 ---------DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAG-RLSEAMNLINSS--PFSES 632 (754)
Q Consensus 565 ---------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~ 632 (754)
...|...+....+.|..+.|..+|.++.+. .-.+....|...+.+-.+.| +.+.|.++|+.. ..+.+
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 235777778888899999999999999873 11223345554444445554 589999999865 23347
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 633 PLLWRTLVSVSKLMANSKFSILASKRLLDLEPK---DAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
+..|..++......|+.+.|..+|++++...|+ ....|......-...|+.+.+.++.+++.+.-.
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 888999999888999999999999999998883 456788888888899999999999999976544
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=4.1e-10 Score=112.81 Aligned_cols=218 Identities=11% Similarity=0.078 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-------cccch-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 004425 446 EDVMVLFSQQRLAGMEPDPVTFSRLLSLSA-------SQACL-------VRGRSLHAYSIKTGYAADVIVGNALITMYAK 511 (754)
Q Consensus 446 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 511 (754)
++|..+|++..... +-+...|..+...+. ..|++ ++|..+++++++.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777641 223345555555543 34664 7788888887773223455677788888888
Q ss_pred cCCHHHHHHHHhccCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH-hcCCHHHHH
Q 004425 512 CGSIDGAFQIFKGISD--R-DIV-SWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACI-YSGLSEGGI 585 (754)
Q Consensus 512 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~-~~g~~~~a~ 585 (754)
.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++.++. .|+. ..|........ ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888887754 3 233 6888888888888888888888888773 3433 34433333222 368888888
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 004425 586 CLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS----PFSE--SPLLWRTLVSVSKLMANSKFSILASKRL 659 (754)
Q Consensus 586 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 659 (754)
.+|++..+.. +-+...|..++..+.+.|++++|+.+|++. +..| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888877632 234567777888888888888888888765 1244 4667888888888888888888888888
Q ss_pred hccCCCCcc
Q 004425 660 LDLEPKDAG 668 (754)
Q Consensus 660 ~~~~p~~~~ 668 (754)
++..|++..
T Consensus 268 ~~~~p~~~~ 276 (308)
T 2ond_A 268 FTAFREEYE 276 (308)
T ss_dssp HHHTTTTTS
T ss_pred HHHcccccc
Confidence 888887553
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.31 E-value=5.1e-11 Score=113.66 Aligned_cols=162 Identities=7% Similarity=-0.065 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHHHHHH
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFACMVD 609 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 609 (754)
..|......+...|++++|+..|++.++....++...+..+..++...|++++|+..|++..+ ..| +...+..++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHH
Confidence 344444444444455555555555444432223334444444444455555555555554433 122 2334444455
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCChHHHHHHHHHhhccCCC--CcchHHHHHHHHH
Q 004425 610 LLGRAGRLSEAMNLINSS-PFSE-SP-------LLWRTLVSVSKLMANSKFSILASKRLLDLEPK--DAGSFILVSNMYA 678 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~ 678 (754)
+|...|++++|++.+++. ...| ++ ..|..+...+...|++++|+..++++++++|+ ++.++..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 555555555555544433 1112 22 33444555555555555555555555555555 5555555555555
Q ss_pred hcCCc---------------------------hHHHHHHHHHhh
Q 004425 679 GQGML---------------------------DEAAKVRTTMND 695 (754)
Q Consensus 679 ~~g~~---------------------------~~a~~~~~~m~~ 695 (754)
..|+. ++|...+++..+
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555 888888887765
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.31 E-value=1.2e-10 Score=116.67 Aligned_cols=213 Identities=9% Similarity=0.009 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHhccCC---C-ChhHHHHHHHHHHH
Q 004425 481 VRGRSLHAYSIKTGYAADVIVGNALITMYA-------KCGSI-------DGAFQIFKGISD---R-DIVSWNAMLSAYAL 542 (754)
Q Consensus 481 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 542 (754)
+.|..+++++++.. +.++..|..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888888753 557778888887776 35885 999999998754 3 45689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHh-hcCCHHH
Q 004425 543 HGLGKGALLLFEEMKREGFAPDDI--SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLG-RAGRLSE 619 (754)
Q Consensus 543 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~ 619 (754)
.|++++|..+|++.++ +.|+.. .|..+...+.+.|++++|..+|++..+. .+++...|...+.... ..|+.++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 667643 7889999999999999999999999762 2333445544444432 3699999
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhhcc---CCC-CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 620 AMNLINSS-PFS-ESPLLWRTLVSVSKLMANSKFSILASKRLLDL---EPK-DAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 620 A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
|.++|++. ... .++..|..++..+...|+.++|..+++++++. .|+ ....|..++..+...|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999876 222 37899999999999999999999999999995 554 6678999999999999999999999988
Q ss_pred hhCCC
Q 004425 694 NDLRL 698 (754)
Q Consensus 694 ~~~~~ 698 (754)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 76543
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=4.1e-12 Score=127.81 Aligned_cols=235 Identities=14% Similarity=0.048 Sum_probs=114.0
Q ss_pred hhHHHHHHHHhhhhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHh------C
Q 004425 428 AEFNAILSGFMEKIADDEEDVMVLFSQQRLA-------GMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKT------G 494 (754)
Q Consensus 428 ~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 494 (754)
..+..+...+.. .|++++|+.+|++..+. ........+..+...+...|++++|...+.++.+. +
T Consensus 28 ~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 28 RTLHNLVIQYAS--QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 356666667777 77777777777776652 11112234555555566666666666666655543 1
Q ss_pred C-CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCCH-H
Q 004425 495 Y-AADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKRE------GFAPDD-I 566 (754)
Q Consensus 495 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~ 566 (754)
- +....++..+...|...|++++|...|+ +..+. +-.|+. .
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------------------------~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCK-------------------------------RALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHH-------------------------------HHHHHHHHHHCTTCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHH-------------------------------HHHHHHHHhcCCCChHHHH
Confidence 1 1123344444455555555555555544 44432 111211 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh-----CCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhCC----------CC
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIY-----GLRPI-LEHFACMVDLLGRAGRLSEAMNLINSSP----------FS 630 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~ 630 (754)
.+..+...+...|++++|..+++++.+.. +..|. ...+..++.+|.+.|++++|.+.++++- ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 34444444445555555555554443310 00111 2234444555555555555555444320 00
Q ss_pred C-------CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 631 E-------SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 631 p-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+ ....+..+...+...+.+.++...++++....|.++.++..++.+|...|++++|.+.+++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 1112222333344455666677777787778888888888888889888999999888887644
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=1.2e-10 Score=121.10 Aligned_cols=228 Identities=7% Similarity=-0.042 Sum_probs=173.4
Q ss_pred HHhhhhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHhcccchHHHHHHHHHHHHhC--C----CCchhHHHH
Q 004425 436 GFMEKIADDEEDVMVLFSQQRLAG-MEPD----PVTFSRLLSLSASQACLVRGRSLHAYSIKTG--Y----AADVIVGNA 504 (754)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~m~~~g-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~~ 504 (754)
.+.. .|++++|+..|++..+.- -.++ ..++..+...+...|+++.|...+.++.+.. . +....+++.
T Consensus 112 ~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 112 YELD--QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHH--TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHH--hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 4445 788888888888876531 1122 2467777788888888888888888887541 1 112456788
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC-----CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 004425 505 LITMYAKCGSIDGAFQIFKGISD-----RDI----VSWNAMLSAYALHGLGKGALLLFEEMKRE----GFAPD-DISILG 570 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ 570 (754)
+...|...|++++|...|++..+ ++. .+|..+...|...|++++|+..+++..+. +..|+ ..++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 88999999999999999987742 222 47888999999999999999999998862 33243 357888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHh---CCCCCccHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIY---GLRPILEHFACMVDLLGRAGR---LSEAMNLINSSPFSES-PLLWRTLVSVS 643 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~ 643 (754)
+...+...|++++|..++++..+.. +.+.....+..+..+|...|+ +++|++++++....|+ ...+..+...+
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999886632 122223346778899999999 9999999999865553 55777889999
Q ss_pred HhcCChHHHHHHHHHhhccCCC
Q 004425 644 KLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 644 ~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
...|+.++|...+++++++...
T Consensus 350 ~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886543
No 74
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.29 E-value=6.9e-11 Score=120.09 Aligned_cols=134 Identities=10% Similarity=0.001 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC----cc
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFA-PD----DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI----LE 602 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 602 (754)
.+..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|..++++......-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4566666777777777777777766542100 11 125666677777778888888877776552111111 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS-------PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
.+..++.+|...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++++++.++
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 5667778888888888888877654 1111 2457778888999999999999999999988765
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=7.5e-11 Score=108.09 Aligned_cols=159 Identities=16% Similarity=0.042 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 004425 501 VGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACI 576 (754)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~ 576 (754)
.+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+. .| +...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 344455555555666666666655543 23344555555555555555555555555542 22 2234444444444
Q ss_pred hcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004425 577 YSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILAS 656 (754)
Q Consensus 577 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 656 (754)
..|++++|..+++++.+. .+.+...|..+...+...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA----------------------------------NPINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc----------------------------------CcHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 555555555554444331 1235667777778888888888888888
Q ss_pred HHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 657 KRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 657 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+++++..|+++..+..++.+|...|++++|...+++..+
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888887754
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.29 E-value=5.3e-11 Score=126.89 Aligned_cols=177 Identities=8% Similarity=0.007 Sum_probs=155.4
Q ss_pred HHHHHHHHhccC---CCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004425 515 IDGAFQIFKGIS---DRDIVSWNAMLSAYALHGLG-KGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFN 589 (754)
Q Consensus 515 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 589 (754)
++++...++... ..+...|..+...|...|++ ++|++.|++.++ ..|+ ...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666665543 24677899999999999999 999999999998 4565 5689999999999999999999999
Q ss_pred HHHHHhCCCCCccHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CChH
Q 004425 590 EIEQIYGLRPILEHFACMVDLLGRA---------GRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLM--------ANSK 650 (754)
Q Consensus 590 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~~ 650 (754)
+..+ +.|+...+..+..+|... |++++|++.+++. ...| +...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9955 568888899999999999 9999999999876 3344 689999999999998 9999
Q ss_pred HHHHHHHHhhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 651 FSILASKRLLDLEP---KDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 651 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+|+..++++++++| +++..|..++.+|...|++++|...+++..+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999988663
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=1.7e-10 Score=109.96 Aligned_cols=206 Identities=13% Similarity=-0.011 Sum_probs=145.2
Q ss_pred CCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhHHHHHHH
Q 004425 462 PDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--R-DIVSWNAMLS 538 (754)
Q Consensus 462 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 538 (754)
.|...+......+...|++++|...++.+.+..-+++...+..+...|...|++++|...|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 345667777777888888888888888888876436666666688888888888888888887743 3 3457777888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC---ccHHHHH
Q 004425 539 AYALHGLGKGALLLFEEMKREGFAPDD--------ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI---LEHFACM 607 (754)
Q Consensus 539 ~~~~~g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 607 (754)
.|...|++++|+..|++.++ ..|+. ..|..+...+...|++++|+..|+++.+ +.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 88888888888888888887 44543 2466666777788888888888888743 4554 4566677
Q ss_pred HHHHhhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 608 VDLLGRAGRL--SEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 608 ~~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
..+|...|+. ++|..+. ..+...+.... ....+.+++|...++++++++|+++.+...++.+...
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 7777665543 2222211 12333333322 3345667999999999999999999888888776543
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=2.8e-11 Score=121.58 Aligned_cols=239 Identities=11% Similarity=0.019 Sum_probs=151.4
Q ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHhcCCC--------CC---hhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHc----
Q 004425 394 SDVRLGTALVDIYAKGGDLKSARMLLDGFSC--------KY---TAEFNAILSGFMEKIADDEEDVMVLFSQQRLA---- 458 (754)
Q Consensus 394 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~---- 458 (754)
.+..++..+...|...|++++|...|+++.. .+ ...+..+...|.. .|++++|+..+++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD--QNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999987753 22 2357778888888 99999999999998864
Q ss_pred --CCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHh------CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 004425 459 --GMEPD-PVTFSRLLSLSASQACLVRGRSLHAYSIKT------GYAA-DVIVGNALITMYAKCGSIDGAFQIFKGISDR 528 (754)
Q Consensus 459 --g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 528 (754)
+-.|. ..++..+...+...|++++|...+.++.+. +..| ...
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---------------------------- 154 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK---------------------------- 154 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH----------------------------
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH----------------------------
Confidence 22233 357788889999999999999999988764 1111 122
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh------
Q 004425 529 DIVSWNAMLSAYALHGLGKGALLLFEEMKRE------GFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIY------ 595 (754)
Q Consensus 529 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------ 595 (754)
.|..+...|...|++++|+.+++++.+. +..|+. .++..+...+...|++++|..+++++.+..
T Consensus 155 ---~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 231 (311)
T 3nf1_A 155 ---QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231 (311)
T ss_dssp ---HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3444455555555555555555555542 112322 255566666666677777776666665411
Q ss_pred CCCCCcc-------HHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 596 GLRPILE-------HFACMVDLLGRAGRLSEAMNLINSSP-FSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 596 ~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
...+... .+..+...+...+.+.+|...++... ..| +..+|..+..++...|++++|...+++++++.|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1112211 12223333444555555566665552 233 5778889999999999999999999999998875
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.23 E-value=6.4e-09 Score=107.44 Aligned_cols=254 Identities=11% Similarity=0.002 Sum_probs=171.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhcccchHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhc
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPV----TFSRLLSLSASQACLVRGRSLHAYSIKT----GYA-ADVIVGNALITMYAKC 512 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~ 512 (754)
.|++++|...+++.....-..+.. .+..+...+...|+++.|...+.+..+. |.. ....++..+...+...
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 677777777777766543111211 3444555666777788777777776643 110 0123345677778888
Q ss_pred CCHHHHHHHHhccCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--C--CHHHHHHHHHHHHh
Q 004425 513 GSIDGAFQIFKGISD-------R----DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFA--P--DDISILGVLQACIY 577 (754)
Q Consensus 513 g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll~a~~~ 577 (754)
|++++|...+++... + ....+..+...+...|++++|...+++..+.... + ...++..+...+..
T Consensus 107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 186 (373)
T 1hz4_A 107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA 186 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Confidence 888888888876632 1 1235666778888899999999999988763322 1 12467777788889
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCccHHH-----HHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhc
Q 004425 578 SGLSEGGICLFNEIEQIYGLRPILEHFA-----CMVDLLGRAGRLSEAMNLINSSP-FSES-----PLLWRTLVSVSKLM 646 (754)
Q Consensus 578 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~ 646 (754)
.|++++|..++++......-......+. ..+..+...|++++|...+++.. ..|. ...+..+...+...
T Consensus 187 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 266 (373)
T 1hz4_A 187 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 266 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHc
Confidence 9999999999998876322211111122 23445778999999999998762 1121 33567788888899
Q ss_pred CChHHHHHHHHHhhccCCCC------cchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 647 ANSKFSILASKRLLDLEPKD------AGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 647 g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
|+.++|...++++++..+.. ...+..++.+|...|++++|...+++...
T Consensus 267 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 267 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999988764431 23677889999999999999999888754
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.22 E-value=5.1e-10 Score=102.43 Aligned_cols=168 Identities=14% Similarity=0.028 Sum_probs=134.1
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHH
Q 004425 465 VTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYA 541 (754)
Q Consensus 465 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 541 (754)
..+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...++++.+ .+...|..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777888899999999999999987653 44678889999999999999999999998753 46778899999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHH
Q 004425 542 LHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAM 621 (754)
Q Consensus 542 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 621 (754)
..|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+. .
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~------------------------- 140 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-R------------------------- 140 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------------------------
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-C-------------------------
Confidence 9999999999999999842 224567777888888888888888888887662 1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc
Q 004425 622 NLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG 668 (754)
Q Consensus 622 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 668 (754)
+.+...|..+...+...|+.++|...+++++++.|+++.
T Consensus 141 --------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 141 --------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred --------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 124556667777777777778888888888777777554
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.22 E-value=2.3e-10 Score=118.50 Aligned_cols=222 Identities=13% Similarity=0.012 Sum_probs=136.8
Q ss_pred HHhcccchHHHHHHHHHHHHhC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC-----hhHHHHHH
Q 004425 473 LSASQACLVRGRSLHAYSIKTG--YA---ADVIVGNALITMYAKCGSIDGAFQIFKGISD-----RD-----IVSWNAML 537 (754)
Q Consensus 473 ~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li 537 (754)
.+...|+++.|...+.++.+.. +. ....++..+...|...|+++.|...+++..+ ++ ..+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 3445666666666666665431 11 1234556666677777777777666665421 11 23566777
Q ss_pred HHHHHcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---CCCCCccHHHHHHH
Q 004425 538 SAYALHGLGKGALLLFEEMKRE----GFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIY---GLRPILEHFACMVD 609 (754)
Q Consensus 538 ~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~ 609 (754)
..|...|++++|++.|++.++. +-.+. ..++..+..++...|++++|..++++..+.. +.+....++..++.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 7777788888888777776642 11111 1356667777778888888888887765511 22222456667778
Q ss_pred HHhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 610 LLGRAGRLSEAMNLINSS----PF--SES-PLLWRTLVSVSKLMAN---SKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
+|.+.|++++|.+.+++. .. .|. ...+..+...+...++ .++|...+++. ...|.....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 888888888888877654 11 122 3344455555556666 66666666652 2233345567788888999
Q ss_pred cCCchHHHHHHHHHhh
Q 004425 680 QGMLDEAAKVRTTMND 695 (754)
Q Consensus 680 ~g~~~~a~~~~~~m~~ 695 (754)
.|++++|...+++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999988888887643
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.15 E-value=5.4e-09 Score=108.17 Aligned_cols=225 Identities=8% Similarity=0.016 Sum_probs=171.6
Q ss_pred HHhhhhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcccchHHHHHHHHHHHHhC--C---CC-chhHHHH
Q 004425 436 GFMEKIADDEEDVMVLFSQQRLAGM-EPD----PVTFSRLLSLSASQACLVRGRSLHAYSIKTG--Y---AA-DVIVGNA 504 (754)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~~-~~~~~~~ 504 (754)
.+.. .|++++|+..|++..+... .++ ..++..+...+...|+++.|...+.++.+.. . .+ ...+++.
T Consensus 110 ~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 110 YEFD--QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHH--TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHH--HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445 8899999999888775311 133 2467777888889999999999988887531 1 11 2456778
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 004425 505 LITMYAKCGSIDGAFQIFKGISD-----RD----IVSWNAMLSAYALHGLGKGALLLFEEMKR-----EGFAPDDISILG 570 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 570 (754)
+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..|++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 88999999999999999987643 22 24678899999999999999999999886 32 222457888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIYGLRPI---LEHFACMVDLLGRAGR---LSEAMNLINSSPFSES-PLLWRTLVSVS 643 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~ 643 (754)
+...+.+.|++++|..++++..+...-..+ ...+..+...+...|+ +++|+.++++....|+ ...+..+...+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 999999999999999999999874322222 2356677778888888 9999999998755443 45667888999
Q ss_pred HhcCChHHHHHHHHHhhccC
Q 004425 644 KLMANSKFSILASKRLLDLE 663 (754)
Q Consensus 644 ~~~g~~~~a~~~~~~~~~~~ 663 (754)
...|+.++|...+++++++.
T Consensus 347 ~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988753
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.13 E-value=1.7e-09 Score=105.52 Aligned_cols=205 Identities=10% Similarity=-0.024 Sum_probs=134.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 004425 498 DVIVGNALITMYAKCGSIDGAFQIFKGISD--RD----IVSWNAMLSAYALHGLGKGALLLFEEMKREGF-APD-DISIL 569 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 569 (754)
+...+-.+...+.+.|++++|...|+.+.+ |+ ...|..+..+|...|++++|+..|++.++... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555566667777777777777776643 22 34566666777777777777777777776321 112 12455
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 004425 570 GVLQACIY--------SGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLV 640 (754)
Q Consensus 570 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 640 (754)
.+..++.. .|++++|...|+++.+. .|+ ......+.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55556666 67777777777776653 122 12221111111100000 11246778
Q ss_pred HHHHhcCChHHHHHHHHHhhccCCCC---cchHHHHHHHHHhc----------CCchHHHHHHHHHhhCCCccCCceeEE
Q 004425 641 SVSKLMANSKFSILASKRLLDLEPKD---AGSFILVSNMYAGQ----------GMLDEAAKVRTTMNDLRLSKEAGCSWI 707 (754)
Q Consensus 641 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~ 707 (754)
..+...|++++|+..++++++..|++ +..+..++.+|... |++++|...++++.+...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 88999999999999999999999984 45899999999977 999999999998866332
Q ss_pred EECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHc
Q 004425 708 EIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMKLK 743 (754)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 743 (754)
.+|........+..+...+++.
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHHh
Confidence 3667778888888888777754
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.12 E-value=3.2e-10 Score=125.61 Aligned_cols=163 Identities=13% Similarity=0.170 Sum_probs=135.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 004425 498 DVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQ 573 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 573 (754)
+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+..+|.+.|++++|+..|++.++ +.|+. ..|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 466788888888888888888888887753 3567888899999999999999999999988 56765 58888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 004425 574 ACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSK 650 (754)
Q Consensus 574 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 650 (754)
++...|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|++.+++. ...| +...|..++.++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999998876 3444 578889999999999999999998865 4455 5888999999999999999
Q ss_pred HHHHHHHHhhccCCC
Q 004425 651 FSILASKRLLDLEPK 665 (754)
Q Consensus 651 ~a~~~~~~~~~~~p~ 665 (754)
+|.+.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999886554
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=8.3e-10 Score=108.92 Aligned_cols=221 Identities=14% Similarity=0.111 Sum_probs=156.0
Q ss_pred hcccchHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----------C-ChhHHHHH
Q 004425 475 ASQACLVRGRSLHAYSIKT-------GYAADVIVGNALITMYAKCGSIDGAFQIFKGISD----------R-DIVSWNAM 536 (754)
Q Consensus 475 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l 536 (754)
...|+++.|..++++..+. ..+....++..+...|...|++++|...|++..+ + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776642 2233567788899999999999999999987642 1 23578889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-----CCCC-CccH
Q 004425 537 LSAYALHGLGKGALLLFEEMKRE------GFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIY-----GLRP-ILEH 603 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 603 (754)
...|...|++++|+..|++..+. .-.|+ ..++..+...+...|++++|..+++++.+.. +..| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998864 11233 3478888889999999999999999987731 1122 2457
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----------CCCC-CHHHHHHHHHHHHhcCC------hHHHHHHHHHhhccCCCC
Q 004425 604 FACMVDLLGRAGRLSEAMNLINSS----------PFSE-SPLLWRTLVSVSKLMAN------SKFSILASKRLLDLEPKD 666 (754)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~----------~~~p-~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~ 666 (754)
+..++.+|.+.|++++|.++++++ ...+ ....|..+.......+. +..+...++.+....|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999998764 1122 23344444444444333 333333444444445666
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 667 AGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 667 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+..+..++.+|...|++++|...+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77899999999999999999999998754
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=1.4e-09 Score=107.79 Aligned_cols=187 Identities=12% Similarity=-0.006 Sum_probs=126.3
Q ss_pred HHHHhcCCHHHHHHHHhccCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHH
Q 004425 507 TMYAKCGSIDGAFQIFKGISD-----RD----IVSWNAMLSAYALHGLGKGALLLFEEMKREGFA-PD----DISILGVL 572 (754)
Q Consensus 507 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll 572 (754)
..|...|++++|...|++..+ .+ ..+|+.+..+|...|++++|+..|++.++.... .+ ..++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345666777766666665432 11 346777888888888888888888877752111 01 23677888
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CH-----HHHHH
Q 004425 573 QACIYS-GLSEGGICLFNEIEQIYGLRPI----LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE---SP-----LLWRT 638 (754)
Q Consensus 573 ~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~-----~~~~~ 638 (754)
..|... |++++|+..|++..+...-..+ ..++..++.+|.+.|++++|++.+++. ...| +. ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 888886 9999999999988763211111 346778899999999999999999865 1222 21 25677
Q ss_pred HHHHHHhcCChHHHHHHHHHhhccCCCCcch-----HHHHHHHHH--hcCCchHHHHHHHHH
Q 004425 639 LVSVSKLMANSKFSILASKRLLDLEPKDAGS-----FILVSNMYA--GQGMLDEAAKVRTTM 693 (754)
Q Consensus 639 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m 693 (754)
+..++...|++++|+..++++++++|+.... +..++..|. ..+++++|...++++
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 8888889999999999999999999986543 344566664 457788888888643
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.08 E-value=1.5e-10 Score=101.77 Aligned_cols=139 Identities=7% Similarity=-0.089 Sum_probs=93.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHH
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLS 618 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 618 (754)
+...|++++|+..+++... ..|+. ..+..+...|...|++++|++.|++..+. -+-+...|..+..+|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 3344556666666665544 33332 24445556666666666666666666541 1223455666666666666666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH-HHHhhccCCCCcchHHHHHHHHHhcCC
Q 004425 619 EAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILA-SKRLLDLEPKDAGSFILVSNMYAGQGM 682 (754)
Q Consensus 619 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 682 (754)
+|+..+++. ...| ++.+|..+...+...|+.++|... ++++++++|+++.+|..++.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 666666544 3345 588899999999999998776655 699999999999999999999998886
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=3.5e-09 Score=104.95 Aligned_cols=171 Identities=6% Similarity=-0.083 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC----hhHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCC-----
Q 004425 500 IVGNALITMYAKCGSIDGAFQIFKGISD-----RD----IVSWNAMLSAYALH-GLGKGALLLFEEMKREGFAPD----- 564 (754)
Q Consensus 500 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~----- 564 (754)
.+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++.++. .|+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChH
Confidence 3455555566666666666665554432 11 23677788888886 9999999999888762 221
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-Cc-----cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH--
Q 004425 565 --DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRP-IL-----EHFACMVDLLGRAGRLSEAMNLINSS-PFSESP-- 633 (754)
Q Consensus 565 --~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-- 633 (754)
..++..+...+...|++++|+.+|++..+. .... .. ..|..++.++...|++++|+..+++. ...|+.
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 246778888899999999999999988772 2221 11 14677888888999999999999875 334431
Q ss_pred ----HHHHHHHHHHH--hcCChHHHHHHHHHhhccCCCCcchHHHH
Q 004425 634 ----LLWRTLVSVSK--LMANSKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 634 ----~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
..+..++.++. ..+++++|+..++++..++|.+...+..+
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 13444556664 34678889999988888888754444433
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.05 E-value=8.6e-09 Score=97.72 Aligned_cols=180 Identities=12% Similarity=-0.003 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----HHH
Q 004425 500 IVGNALITMYAKCGSIDGAFQIFKGISD--RD----IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDI----SIL 569 (754)
Q Consensus 500 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~ 569 (754)
..+..+...+.+.|++++|...|+.+.+ |+ ...+..+..+|.+.|++++|+..|+++++. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3445556667777888888888877643 32 235666777777788888888888887773 34432 333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 004425 570 GVLQACIY------------------SGLSEGGICLFNEIEQIYGLRPIL-EHFACMVDLLGRAGRLSEAMNLINSSPFS 630 (754)
Q Consensus 570 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (754)
.+..++.. .|++++|...|+++.+ ..|+. .......... ......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l~----~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRLV----FLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHHH----HHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHHH----HHHHHH---------
Confidence 34444433 3445555555555543 12221 1111110000 000000
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004425 631 ESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA---GSFILVSNMYAGQGMLDEAAKVRTTMNDLRLS 699 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 699 (754)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01113456678889999999999999999999976 57999999999999999999999998876654
No 90
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.03 E-value=1.3e-07 Score=97.58 Aligned_cols=158 Identities=12% Similarity=0.017 Sum_probs=72.5
Q ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCc-hhHHH----
Q 004425 433 ILSGFMEKIADDEEDVMVLFSQQRLAGME--P--DPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAAD-VIVGN---- 503 (754)
Q Consensus 433 li~~~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~---- 503 (754)
+...+.. .|++++|...+++....... + ...++..+...+...|++++|...++...+..-.++ ...+.
T Consensus 141 la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 218 (373)
T 1hz4_A 141 RAQLLWA--WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 218 (373)
T ss_dssp HHHHHHH--TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHH--hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHH
Confidence 3344444 55555555555555442111 1 113344455555556666666666665554311111 01111
Q ss_pred -HHHHHHHhcCCHHHHHHHHhccCCCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCHH-HHHH
Q 004425 504 -ALITMYAKCGSIDGAFQIFKGISDRDI-------VSWNAMLSAYALHGLGKGALLLFEEMKRE----GFAPDDI-SILG 570 (754)
Q Consensus 504 -~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-t~~~ 570 (754)
..+..+...|++++|...++....++. ..+..+...+...|++++|...+++.... |..++.. .+..
T Consensus 219 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 298 (373)
T 1hz4_A 219 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 298 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 122335566666666666665543211 13344555555666666666666555431 1111111 3333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 004425 571 VLQACIYSGLSEGGICLFNEIE 592 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~ 592 (754)
+..++...|+.++|...+++..
T Consensus 299 la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 299 LNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 4444555555555555555543
No 91
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=4.2e-09 Score=117.46 Aligned_cols=148 Identities=10% Similarity=0.035 Sum_probs=71.2
Q ss_pred hcccchHHHHHHHHHHHH-------hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcC
Q 004425 475 ASQACLVRGRSLHAYSIK-------TGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHG 544 (754)
Q Consensus 475 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 544 (754)
...|++++|.+.++.+.+ ...+.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 455556666666655551 01122344445555555555555555555554432 23344555555555555
Q ss_pred ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHH
Q 004425 545 LGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNL 623 (754)
Q Consensus 545 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 623 (754)
++++|+..|++.++ +.|+. ..+..+..++...|++++ ++.|+++.+. -+.+...|..+..+|.+.|++++|++.
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555 33432 344455555555555555 5555555431 111233444444555555555555555
Q ss_pred HHhC
Q 004425 624 INSS 627 (754)
Q Consensus 624 ~~~~ 627 (754)
++++
T Consensus 557 ~~~a 560 (681)
T 2pzi_A 557 LDEV 560 (681)
T ss_dssp HHTS
T ss_pred HHhh
Confidence 5443
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=5.4e-09 Score=101.86 Aligned_cols=203 Identities=11% Similarity=-0.042 Sum_probs=146.4
Q ss_pred CCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhccCC--C---C-hhH
Q 004425 462 PDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAAD---VIVGNALITMYAKCGSIDGAFQIFKGISD--R---D-IVS 532 (754)
Q Consensus 462 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~-~~~ 532 (754)
.+...+......+...|++++|...++.+.+.. +.+ ...+..+..+|.+.|++++|...|+...+ | . ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 344667777888899999999999999999864 223 66788889999999999999999998853 3 2 346
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccH
Q 004425 533 WNAMLSAYAL--------HGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEH 603 (754)
Q Consensus 533 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 603 (754)
+..+..++.. .|++++|+..|++.++ ..|+.. ....+ ..+..+... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888988 9999999999999998 446543 22111 111111110 0112
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc----------CChHHHHHHHHHhhccCCCCcc
Q 004425 604 FACMVDLLGRAGRLSEAMNLINSS----PFSE-SPLLWRTLVSVSKLM----------ANSKFSILASKRLLDLEPKDAG 668 (754)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 668 (754)
+..++.+|.+.|++++|+..++++ |..+ ....+..+..++... |++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 456777888888888888888765 3222 255677777777755 8899999999999999999853
Q ss_pred ---hHHHHHHHHHhcCCchHH
Q 004425 669 ---SFILVSNMYAGQGMLDEA 686 (754)
Q Consensus 669 ---~~~~l~~~~~~~g~~~~a 686 (754)
++..+..++...|+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 455666666666665543
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=7e-09 Score=88.91 Aligned_cols=129 Identities=18% Similarity=0.210 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLL 611 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 611 (754)
.|..+...+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|..+++++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------- 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 45556666666666666666666666532 113344555555555666666666666555441
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 004425 612 GRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRT 691 (754)
Q Consensus 612 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 691 (754)
.+.+...|..+...+...|++++|...++++++..|++...+..++.+|...|++++|...++
T Consensus 65 -----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 65 -----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 122455666677777777788888888888888888777788888888888888888888887
Q ss_pred HHhh
Q 004425 692 TMND 695 (754)
Q Consensus 692 ~m~~ 695 (754)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7654
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.99 E-value=1.6e-08 Score=99.51 Aligned_cols=200 Identities=11% Similarity=0.008 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-------C-
Q 004425 464 PVTFSRLLSLSASQACLVRGRSLHAYSIKT------GY-AADVIVGNALITMYAKCGSIDGAFQIFKGISD-------R- 528 (754)
Q Consensus 464 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~- 528 (754)
..++..+...+...|++++|...++++.+. +- +....++..+...|...|++++|...|++..+ +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 356677777788888888888888877754 22 22456677888888888888888888887642 1
Q ss_pred ---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---
Q 004425 529 ---DIVSWNAMLSAYALHGLGKGALLLFEEMKRE------GFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIY--- 595 (754)
Q Consensus 529 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--- 595 (754)
...+|..+...|...|++++|+..+++..+. +-.|+. .++..+...+...|++++|..+++++.+..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 2356788889999999999999999998874 113433 478888899999999999999999887631
Q ss_pred ---CCCCC-ccHHHHHHHHHhhcC------CHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Q 004425 596 ---GLRPI-LEHFACMVDLLGRAG------RLSEAMNLINSSPF-SE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLE 663 (754)
Q Consensus 596 ---~~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 663 (754)
...+. ...+..+...+...+ .+.++...++.... .| ...++..+...+...|++++|...++++++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 12233 234444444444333 34555555555532 23 46678889999999999999999999998753
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.99 E-value=5.7e-09 Score=103.03 Aligned_cols=172 Identities=10% Similarity=-0.039 Sum_probs=131.7
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 004425 517 GAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIY 595 (754)
Q Consensus 517 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 595 (754)
.....++.....+...+..+...+...|++++|+..|++.++ ..|+. ..+..+...+...|++++|...++++..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-- 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--
Confidence 333444444434445666777788888899999999988888 55654 5777788888888999999998888744
Q ss_pred CCCCCccHHH-HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC--cchH
Q 004425 596 GLRPILEHFA-CMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD--AGSF 670 (754)
Q Consensus 596 ~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~ 670 (754)
..|+..... .....+.+.|+.++|.+.+++. ...| +...+..+...+...|+.++|...++++++.+|++ ..++
T Consensus 180 -~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 180 -QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp -GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred -hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 345443322 2333356677778888877654 3334 68899999999999999999999999999999997 8899
Q ss_pred HHHHHHHHhcCCchHHHHHHHHH
Q 004425 671 ILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 671 ~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
..|+.+|...|+.++|...+++.
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHH
Confidence 99999999999999999988764
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.95 E-value=2.1e-07 Score=90.01 Aligned_cols=175 Identities=9% Similarity=-0.040 Sum_probs=112.7
Q ss_pred HHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 518 AFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 518 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
|...|++... ++..++..+..++...|++++|++++++.+..|..++. ..+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555665532 34455556677777778888888888777664432233 4666677777788888888888887755
Q ss_pred HhCCCC-----CccHHHHHHHH--Hhh--cCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcc-
Q 004425 594 IYGLRP-----ILEHFACMVDL--LGR--AGRLSEAMNLINSSP-FSESPLLWRTLVSVSKLMANSKFSILASKRLLDL- 662 (754)
Q Consensus 594 ~~~~~p-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 662 (754)
..| +..+...++.+ ... .+++.+|..+|+++. ..|+...-..|++++...|++++|+..++.+.++
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 244 23444444444 222 337788888887762 2344233334444667778888888888877765
Q ss_pred ---------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 663 ---------EPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 663 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
+|+|+.++..++.+....|+ +|.+++++++...
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 47778888777777777776 7778888776643
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=1.1e-09 Score=96.28 Aligned_cols=121 Identities=15% Similarity=0.052 Sum_probs=100.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 004425 572 LQACIYSGLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMAN 648 (754)
Q Consensus 572 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 648 (754)
...+...|++++|+..++... ...|+ ...+..+..+|.+.|++++|++.+++. ...| ++.+|..+..++...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 344556788999999988873 34443 345668999999999999999999876 4445 79999999999999999
Q ss_pred hHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHH-HHHHhh
Q 004425 649 SKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKV-RTTMND 695 (754)
Q Consensus 649 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 695 (754)
+++|+..++++++++|+++.+|..++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987765 465544
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.92 E-value=3.7e-08 Score=84.30 Aligned_cols=130 Identities=17% Similarity=0.193 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004425 501 VGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIY 577 (754)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 577 (754)
.+..+...|...|++++|..+|+++.+ .+...|..+...+...|++++|..+++++.+.+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 567788999999999999999998743 467788899999999999999999999999853 2245577778888888
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004425 578 SGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASK 657 (754)
Q Consensus 578 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 657 (754)
.|++++|..+++++.+. .+. +...|..+...+...|+.++|...++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~--------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPR--------------------------------SAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTT--------------------------------CHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCC--------------------------------ChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 88999998888888662 111 23344455555555566666666666
Q ss_pred HhhccCCC
Q 004425 658 RLLDLEPK 665 (754)
Q Consensus 658 ~~~~~~p~ 665 (754)
++++.+|+
T Consensus 128 ~~~~~~~~ 135 (136)
T 2fo7_A 128 KALELDPR 135 (136)
T ss_dssp HHHHHSTT
T ss_pred HHHccCCC
Confidence 66655554
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.92 E-value=6.1e-09 Score=94.38 Aligned_cols=155 Identities=10% Similarity=-0.030 Sum_probs=97.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004425 503 NALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSG 579 (754)
Q Consensus 503 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 579 (754)
..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++... ..|+.. +..+...+
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~-~~~~~~~~---- 82 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNS-YKSLIAKL---- 82 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHH-HHHHHHHH----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChH-HHHHHHHH----
Confidence 3444555566666666666665543 2344555555666666666666666655544 223221 11111100
Q ss_pred CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 004425 580 LSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASK 657 (754)
Q Consensus 580 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 657 (754)
. +...+...+|++.+++. ...| ++..|..+..++...|++++|...++
T Consensus 83 -----------------------------~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 83 -----------------------------E-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp -----------------------------H-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------------------H-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 0 01111112244444432 2234 68889999999999999999999999
Q ss_pred HhhccCCCC--cchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 658 RLLDLEPKD--AGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 658 ~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 133 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 133 NILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 999999975 5589999999999999999999988653
No 100
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.91 E-value=8.5e-09 Score=89.93 Aligned_cols=102 Identities=8% Similarity=-0.051 Sum_probs=86.6
Q ss_pred CCCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHH
Q 004425 596 GLRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 596 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 672 (754)
.+.|+ ...+..+...+.+.|++++|++.|++. ...| ++..|..+..++...|++++|+..++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34443 345667777888888888888888765 3344 79999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 673 VSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 673 l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
++.+|...|++++|...+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999886643
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.89 E-value=6.1e-08 Score=90.68 Aligned_cols=172 Identities=10% Similarity=-0.054 Sum_probs=132.8
Q ss_pred HHHHHhccC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 004425 518 AFQIFKGIS-DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSG----LSEGGICLFNEIE 592 (754)
Q Consensus 518 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 592 (754)
|.+.|++.. ..+..++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444432 2466677777777878888888888888888754 45566667666766 6 7888999988886
Q ss_pred HHhCCCCCccHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh----cCChHHHHHHHHHhh
Q 004425 593 QIYGLRPILEHFACMVDLLGR----AGRLSEAMNLINSSPFSES----PLLWRTLVSVSKL----MANSKFSILASKRLL 660 (754)
Q Consensus 593 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 660 (754)
+ .| +...+..|..+|.. .+++++|++++++.....+ +..+..|...+.. .++.++|...++++.
T Consensus 81 ~-~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E-AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H-TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H-CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 6 23 45667778888877 8899999999987633333 7888899998888 789999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhc-C-----CchHHHHHHHHHhhCCC
Q 004425 661 DLEPKDAGSFILVSNMYAGQ-G-----MLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 661 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 698 (754)
++ |.++.++..|+.+|... | ++++|...+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 67788999999999864 3 89999999998877654
No 102
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.88 E-value=1.2e-07 Score=91.88 Aligned_cols=179 Identities=13% Similarity=0.080 Sum_probs=127.4
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004425 483 GRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDR-----DIVSWNAMLSAYALHGLGKGALLLFEEMK 557 (754)
Q Consensus 483 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 557 (754)
+...+++....+ .++......+..+|...|++++|++++.+.... +...+-.++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566555544 344555567778888889999999998877332 34567778888999999999999999998
Q ss_pred HcCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 004425 558 REGFAP-----DDISILGVLQA--CIYSG--LSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSP 628 (754)
Q Consensus 558 ~~g~~p-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 628 (754)
+ ..| +..+...+..+ ....| ++++|..+|+++.+ -.|+......+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 567 35566666655 33334 88999999999855 23442233344448889999999999987541
Q ss_pred C-----------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcch
Q 004425 629 F-----------SE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGS 669 (754)
Q Consensus 629 ~-----------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 669 (754)
. .| |+.+...++......|+ +|.+.++++.+.+|+++..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 1 14 57777666666666776 8899999999999998754
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.87 E-value=3e-08 Score=92.53 Aligned_cols=127 Identities=10% Similarity=0.046 Sum_probs=98.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh
Q 004425 535 AMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR 613 (754)
Q Consensus 535 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 613 (754)
.+..+|...|++++|+..|++.++ +.|+. ..+..+..++...|++++|...|+++.+. -+.+...+..+..+|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 388899999999999999999998 55754 58888999999999999999999999772 23346788888888876
Q ss_pred cCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC
Q 004425 614 AGR--LSEAMNLINSSPFSESP--LLWRTLVSVSKLMANSKFSILASKRLLDLEPKD 666 (754)
Q Consensus 614 ~g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 666 (754)
.|+ .+++...++... .|++ ..|..+..++...|++++|+..++++++++|++
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 445666666653 3443 344555666777899999999999999999983
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.86 E-value=4.1e-08 Score=109.49 Aligned_cols=167 Identities=8% Similarity=-0.071 Sum_probs=112.4
Q ss_pred HhcCCHHHHHHHHhccC-----------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh
Q 004425 510 AKCGSIDGAFQIFKGIS-----------DRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIY 577 (754)
Q Consensus 510 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 577 (754)
...|++++|.+.|++.. ..+...|..+..+|...|++++|+..|++.++ ..|+. ..+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 55677777777776654 23445677777777777777777777777776 34543 466667777777
Q ss_pred cCCHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 004425 578 SGLSEGGICLFNEIEQIYGLRP-ILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSIL 654 (754)
Q Consensus 578 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 654 (754)
.|++++|...|+++.+ +.| +...+..+..+|.+.|++++ ++.+++. ...| +...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777755 233 35566777777777777777 7777654 2233 56677777777777777777777
Q ss_pred HHHHhhccCCCCcchHHHHHHHHHhcCC
Q 004425 655 ASKRLLDLEPKDAGSFILVSNMYAGQGM 682 (754)
Q Consensus 655 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 682 (754)
.++++++++|++..++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777777777777777765444
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=1.9e-08 Score=110.34 Aligned_cols=159 Identities=9% Similarity=0.055 Sum_probs=125.1
Q ss_pred cCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004425 512 CGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICL 587 (754)
Q Consensus 512 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 587 (754)
.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999998864 3567899999999999999999999999998 5565 46888899999999999999999
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHhhcc
Q 004425 588 FNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLM---ANSKFSILASKRLLDL 662 (754)
Q Consensus 588 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 662 (754)
+++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999873 2334678899999999999999999999875 3334 688899999999999 9999999999999999
Q ss_pred CCCCcchHHHHH
Q 004425 663 EPKDAGSFILVS 674 (754)
Q Consensus 663 ~p~~~~~~~~l~ 674 (754)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999998888877
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.84 E-value=2.2e-08 Score=84.66 Aligned_cols=114 Identities=11% Similarity=-0.015 Sum_probs=71.8
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 004425 561 FAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWR 637 (754)
Q Consensus 561 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 637 (754)
+.|+. ..+......+.+.|++++|+..|++..+. -+.+...|..+..+|.+.|++++|++.+++. ...| ++..|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 24555566666666666666666666541 1223445555666666666666666665543 2233 567777
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHH
Q 004425 638 TLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNM 676 (754)
Q Consensus 638 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 676 (754)
.+..++...|++++|+..++++++++|++..++..|+++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777778888888888888888888888877777777654
No 107
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.82 E-value=6.8e-06 Score=87.21 Aligned_cols=204 Identities=8% Similarity=-0.055 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHh
Q 004425 445 EEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGA-FQIFK 523 (754)
Q Consensus 445 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~ 523 (754)
.+.+..+|++.+... +-+...|...+.-+.+.|+.+.|..+++++.+. +.+...+.. |+...+.++. ..+.+
T Consensus 195 ~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHH
Confidence 345677888887753 344567777777788889999999999999988 444443332 2222111111 11221
Q ss_pred ccC--C-------C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHH
Q 004425 524 GIS--D-------R---DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQA-CIYSGLSEGGICLFNE 590 (754)
Q Consensus 524 ~~~--~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~ 590 (754)
... . + ....|-..+..+.+.++.+.|..+|++. .. ...+...|...... +...++.+.|..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 110 0 0 1245666777776778899999999988 31 11233344322211 1123468999999999
Q ss_pred HHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Q 004425 591 IEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLD 661 (754)
Q Consensus 591 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 661 (754)
..+.++ -+...+...++...+.|+.+.|..+++++. .....|...+..-..+|+.+.+..++++..+
T Consensus 346 al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888532 234456678888888999999999999873 3678899999888889999999888888774
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=1.2e-07 Score=94.71 Aligned_cols=220 Identities=11% Similarity=0.007 Sum_probs=152.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 567888888888776531 111 0 11146666666666554 4567788888888888
Q ss_pred HhccCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 004425 522 FKGISD-----RD----IVSWNAMLSAYALHGLGKGALLLFEEMKREGF---APD--DISILGVLQACIYSGLSEGGICL 587 (754)
Q Consensus 522 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~ 587 (754)
|.+..+ .+ ..+|+.+...|...|++++|+..|++.++.-. .|. ..++..+...|.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 876632 12 34788888999999999999999998775311 122 2467778888888 999999999
Q ss_pred HHHHHHHhCCCCC----ccHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHH
Q 004425 588 FNEIEQIYGLRPI----LEHFACMVDLLGRAGRLSEAMNLINSS----PFSES----PLLWRTLVSVSKLMANSKFSILA 655 (754)
Q Consensus 588 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~ 655 (754)
|++..+...-..+ ..++..+..+|.+.|++++|++.+++. +..++ ...+..++.++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988763211111 357888999999999999999999865 11122 23566677777888999999999
Q ss_pred HHHhhccCCCCcch-----HHHHHHHHHhcCCchHHHHH
Q 004425 656 SKRLLDLEPKDAGS-----FILVSNMYAGQGMLDEAAKV 689 (754)
Q Consensus 656 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 689 (754)
+++++ ++|+.... ...++..| ..|+.+++.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 99975433 34445545 56776666553
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.82 E-value=9e-09 Score=89.97 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=81.4
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYA 678 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 678 (754)
...+..+...+.+.|++++|++.|++. ...| ++..|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 345666777777888888888877754 2234 78899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhhC
Q 004425 679 GQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 679 ~~g~~~~a~~~~~~m~~~ 696 (754)
..|++++|...+++..+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999987653
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.80 E-value=7.1e-07 Score=87.40 Aligned_cols=209 Identities=13% Similarity=0.098 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhccCC---CChhHHHHHHHHH----HHc---CChHHH
Q 004425 482 RGRSLHAYSIKTGYAADVIVGNALITMYAKCG--SIDGAFQIFKGISD---RDIVSWNAMLSAY----ALH---GLGKGA 549 (754)
Q Consensus 482 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A 549 (754)
+|....+.++..+ +-+..+|+.--..+...| ++++++..++.+.. .+..+|+.-...+ ... ++++++
T Consensus 51 ~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 51 RALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 4444444444433 222333444444455555 66666666665542 2334555433333 334 567777
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCC------HHHH
Q 004425 550 LLLFEEMKREGFAP-DDISILGVLQACIYSGLSE--GGICLFNEIEQIYGLRPILEHFACMVDLLGRAGR------LSEA 620 (754)
Q Consensus 550 ~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A 620 (754)
+.+++++++. .| |...|..-...+.+.|.++ +++++++++.+. -.-+-..|+.-..++.+.|+ ++++
T Consensus 130 L~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 130 FDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 7777777763 34 4456666666667777766 777777777662 22334455555555555555 7777
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-HHHHHHHHHhhccC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 621 MNLINSS-PFSE-SPLLWRTLVSVSKLMANS-KFSILASKRLLDLE---PKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 621 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
+++++++ ...| |...|+.+...+...|+. +.....++++++++ |.++.++..++.+|.+.|+.++|.++++.+.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7777654 2334 788888888887777764 33556777777766 7777888888888888888888888888876
Q ss_pred h
Q 004425 695 D 695 (754)
Q Consensus 695 ~ 695 (754)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 4
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.80 E-value=5.9e-08 Score=106.36 Aligned_cols=145 Identities=12% Similarity=-0.015 Sum_probs=74.1
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHH
Q 004425 478 ACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFE 554 (754)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 554 (754)
|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45566666666655432 23455566666666666666666666665533 234456666666666666666666666
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhc---CCHHHHHHHHHhC
Q 004425 555 EMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRA---GRLSEAMNLINSS 627 (754)
Q Consensus 555 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 627 (754)
+..+ ..|+ ...+..+..++...|++++|.+.|++..+. .+.+...+..+..++... |+.++|.+.+++.
T Consensus 82 ~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 6665 3343 345556666666666666666666666542 122344555666666666 6666666666543
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.79 E-value=6e-08 Score=90.50 Aligned_cols=157 Identities=11% Similarity=-0.043 Sum_probs=118.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHH----------------HHHHHHhcCCHHHHHHHHHHHHHHhC
Q 004425 534 NAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-SILG----------------VLQACIYSGLSEGGICLFNEIEQIYG 596 (754)
Q Consensus 534 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~----------------ll~a~~~~g~~~~a~~~~~~~~~~~~ 596 (754)
-.....+...|++++|+..|++.++ ..|+.. .+.. +..++...|++++|+..|++..+.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 83 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-- 83 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 3445566778888888888888887 456543 5555 888999999999999999999772
Q ss_pred CCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--hHHHHHHHHHhhccCCCCcchHHH
Q 004425 597 LRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMAN--SKFSILASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 597 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~ 672 (754)
-+-+...+..+..+|...|++++|++.+++. ...| ++..|..+..++...|+ .+.+...++++....|. ...+..
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHH
Confidence 2335678999999999999999999999876 3445 68899999988866653 45566667776554443 235677
Q ss_pred HHHHHHhcCCchHHHHHHHHHhh
Q 004425 673 VSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 673 l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++.++...|++++|...+++..+
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 88899999999999999998755
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.78 E-value=6.3e-08 Score=81.75 Aligned_cols=99 Identities=10% Similarity=0.073 Sum_probs=88.9
Q ss_pred CCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHH
Q 004425 597 LRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 597 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
+.|+ ...+...+..|.+.|++++|++.|++. ...| ++..|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4554 356778899999999999999999875 3344 799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHhh
Q 004425 674 SNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 674 ~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
|.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=1.5e-07 Score=88.20 Aligned_cols=129 Identities=9% Similarity=-0.111 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDL 610 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 610 (754)
..+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...|++..+. .+.+...+..++.+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 34455666677777777777777765 3456667777777777777777777777777652 12234455566666
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 611 LGRAGRLSEAMNLINSS-PFSE-----------------SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 611 ~~~~g~~~~A~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
|...|++++|++.+++. ...| ....|..+..++...|++++|...++++++++|+
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 66666666666666543 1111 1245555666666666666666666666666655
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.74 E-value=9.3e-07 Score=87.47 Aligned_cols=158 Identities=9% Similarity=-0.056 Sum_probs=115.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCC-CC----ccHHH
Q 004425 536 MLSAYALHGLGKGALLLFEEMKREGF-APDDI----SILGVLQACIYSGLSEGGICLFNEIEQIYGLR-PI----LEHFA 605 (754)
Q Consensus 536 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~----~~~~~ 605 (754)
.+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..|+++.. .... ++ ...++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~-~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH-TCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-HhcccccHHHHHHHHH
Confidence 46677788888888888888876321 12211 223455566677788888888888876 2222 22 22578
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC-------C-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC------cchH
Q 004425 606 CMVDLLGRAGRLSEAMNLINSSP-------F-SE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD------AGSF 670 (754)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~~-------~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 670 (754)
.++.+|...|++++|++.++++- . .+ ...++..++..|...|++++|...+++++++.++. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88888888888888888887541 1 11 24477889999999999999999999999876543 5689
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHh
Q 004425 671 ILVSNMYAGQGM-LDEAAKVRTTMN 694 (754)
Q Consensus 671 ~~l~~~~~~~g~-~~~a~~~~~~m~ 694 (754)
..+|.+|...|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999995 599999888774
No 116
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.74 E-value=1.9e-07 Score=88.30 Aligned_cols=185 Identities=9% Similarity=-0.060 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCh----hHHHH
Q 004425 464 PVTFSRLLSLSASQACLVRGRSLHAYSIKTGYA-A-DVIVGNALITMYAKCGSIDGAFQIFKGISD--RDI----VSWNA 535 (754)
Q Consensus 464 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~ 535 (754)
...+..+...+...|++++|...++.+.+..-. + ....+..+..+|.+.|++++|...|+++.+ |+. .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345556677888999999999999999986421 1 235677889999999999999999999853 332 24555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 004425 536 MLSAYAL------------------HGLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYG 596 (754)
Q Consensus 536 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 596 (754)
+..++.. .|++++|+..|+++++ ..|+.. ....... ...+...+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----------l~~~~~~~~~--- 148 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----------LVFLKDRLAK--- 148 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----------HHHHHHHHHH---
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----------HHHHHHHHHH---
Confidence 6666654 5789999999999998 557654 2221111 0011111111
Q ss_pred CCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcch
Q 004425 597 LRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSES----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGS 669 (754)
Q Consensus 597 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 669 (754)
....++..|.+.|++++|+..++++ ...|+ +..+..+..++...|+.++|+..++++....|++...
T Consensus 149 ------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 149 ------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 1235678889999999999999876 22232 3578889999999999999999999999999986554
No 117
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.73 E-value=1.3e-07 Score=85.57 Aligned_cols=155 Identities=12% Similarity=-0.031 Sum_probs=106.3
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhHHHHHHHH-HHH
Q 004425 466 TFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD--RDIVSWNAMLSA-YAL 542 (754)
Q Consensus 466 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~ 542 (754)
.+......+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+.... |+...+..+... +..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 45566677889999999999999987754 44678889999999999999999999999865 433333222211 222
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHhhcCCHH
Q 004425 543 HGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI---LEHFACMVDLLGRAGRLS 618 (754)
Q Consensus 543 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~ 618 (754)
.++..+|+..+++.++ ..|+ ...+..+..++...|++++|...|+++.+ ..|+ ...+..++.++...|+.+
T Consensus 87 ~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 87 QAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILK---VNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred hcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCcccChHHHHHHHHHHHHHhCCCC
Confidence 2333456777888777 4564 45677777777888888888888877754 3333 335556666666666666
Q ss_pred HHHHHHHh
Q 004425 619 EAMNLINS 626 (754)
Q Consensus 619 ~A~~~~~~ 626 (754)
+|...+++
T Consensus 162 ~A~~~y~~ 169 (176)
T 2r5s_A 162 AIASKYRR 169 (176)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 66655543
No 118
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.72 E-value=8.9e-08 Score=83.01 Aligned_cols=95 Identities=11% Similarity=0.018 Sum_probs=79.0
Q ss_pred cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 602 EHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
..+..+...+.+.|++++|++.|++. ...| ++..|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34455666677777777777777654 2234 788899999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHhhC
Q 004425 680 QGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 680 ~g~~~~a~~~~~~m~~~ 696 (754)
.|++++|...+++..+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999987653
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=2.7e-08 Score=97.76 Aligned_cols=190 Identities=8% Similarity=-0.042 Sum_probs=132.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 004425 498 DVIVGNALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQ 573 (754)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 573 (754)
+...+..+...+.+.|++++|...|+...+ .+...|..+..+|.+.|++++|+..+++.++ +.|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 345566777788888888888888887642 3667788888888999999999999998887 55654 57788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 004425 574 ACIYSGLSEGGICLFNEIEQIYGLRPIL-EHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFS 652 (754)
Q Consensus 574 a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 652 (754)
++...|++++|...|++..+. .|+. ..+...+....+..+..+... .......++..+...+... ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 899999999999999887662 1211 111112222222111111111 2222334455555555433 36899999
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHhc-CCchHHHHHHHHHhh
Q 004425 653 ILASKRLLDLEPKDAGSFILVSNMYAGQ-GMLDEAAKVRTTMND 695 (754)
Q Consensus 653 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 695 (754)
...++++++++|++......+..++.+. +++++|.++|+++.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999888888888888877 789999999998865
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.71 E-value=2.7e-07 Score=91.38 Aligned_cols=163 Identities=7% Similarity=-0.077 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC----cc
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-----ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI----LE 602 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 602 (754)
.+...+..+...|++++|++.+++.++.....+. ..+..+...+...|++++|...+++..+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566777888888888888877764322111 12334455567778888888888887642111111 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC------Cc
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS-------PFSE--SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK------DA 667 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 667 (754)
.|+.++.+|...|++++|++.+++. +..+ ...++..++..|...|++++|...+++++++.++ -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6778888888888888888888654 2111 1258888999999999999999999999887543 15
Q ss_pred chHHHHHHHHHhcCCchHH-HHHHHHHh
Q 004425 668 GSFILVSNMYAGQGMLDEA-AKVRTTMN 694 (754)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 694 (754)
.+|..+|.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6789999999999999999 77677654
No 121
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.70 E-value=1.7e-07 Score=92.42 Aligned_cols=133 Identities=11% Similarity=-0.021 Sum_probs=111.5
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 004425 563 PDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSESPLLWRTLV 640 (754)
Q Consensus 563 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 640 (754)
|+. ..+..+...+...|++++|...|+++.+. -+-+...+..++.+|.+.|++++|.+.++++ ...|+...+....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 444 56778888899999999999999999772 2334678889999999999999999999987 3456655444444
Q ss_pred H-HHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 641 S-VSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 641 ~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
. .+...++.+.|...++++++.+|+++..+..++.+|...|++++|...++++....
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 3 36677889999999999999999999999999999999999999999999886643
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.69 E-value=4.7e-06 Score=81.60 Aligned_cols=229 Identities=7% Similarity=-0.034 Sum_probs=172.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccc--chHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc--
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDP-VTFSRLLSLSASQA--CLVRGRSLHAYSIKTGYAADVIVGNALITMY----AKC-- 512 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~-- 512 (754)
....++|+.++..++.. .|+. ..|+.--..+...+ ++++++..++.+...+ +-+..+|+.-...+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 44456788888888765 5655 34566566666677 8888888888888765 33445555544444 445
Q ss_pred -CCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------
Q 004425 513 -GSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGK--GALLLFEEMKREGFAPDDISILGVLQACIYSGL------ 580 (754)
Q Consensus 513 -g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 580 (754)
+++++++.+++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++++.... |...|+.-...+.+.|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 788999999998854 57788888888888889888 999999999985433 55678777777777776
Q ss_pred HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCChHHHHH
Q 004425 581 SEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSE-AMNLINSSP-F----SESPLLWRTLVSVSKLMANSKFSIL 654 (754)
Q Consensus 581 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~l~~~~~~~g~~~~a~~ 654 (754)
+++++++++.+... .+-+...|+-+..++.+.|+..+ +.++.+++- . ..++..+..++..+...|+.++|++
T Consensus 202 ~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 89999999998772 34456678888888888888544 556777651 1 3478899999999999999999999
Q ss_pred HHHHhhc-cCCCCcchHHHHHHH
Q 004425 655 ASKRLLD-LEPKDAGSFILVSNM 676 (754)
Q Consensus 655 ~~~~~~~-~~p~~~~~~~~l~~~ 676 (754)
+++++.+ .+|.....|...+..
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHhccChHHHHHHHHHHhh
Confidence 9999997 899988888766543
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.67 E-value=5.1e-07 Score=84.49 Aligned_cols=128 Identities=11% Similarity=-0.020 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 004425 501 VGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSG 579 (754)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 579 (754)
.+..+...+...|++++|...|++...++...|..+...|...|++++|+..|++.++. .|+ ...+..+..++...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcc
Confidence 34556677788888888888888887778888888888888888888888888888874 343 457777888888888
Q ss_pred CHHHHHHHHHHHHHHhCCCCCc----------------cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 004425 580 LSEGGICLFNEIEQIYGLRPIL----------------EHFACMVDLLGRAGRLSEAMNLINSS-PFSES 632 (754)
Q Consensus 580 ~~~~a~~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 632 (754)
++++|...|+++.+. .+.+. ..+..++.+|.+.|++++|.+.+++. ...|+
T Consensus 86 ~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp CHHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 888888888888762 22222 56778888888888888888888764 44454
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.67 E-value=2.5e-07 Score=82.49 Aligned_cols=126 Identities=6% Similarity=-0.005 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh
Q 004425 568 ILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PF-SESPLLWRTLVSVSKL 645 (754)
Q Consensus 568 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~ 645 (754)
+..+...+...|++++|...|++..+. .+.+...+..++.++...|++++|++.+++. .. +.+...|..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344444455555555555555555441 1223444555555556666666666655543 12 2357788889999999
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHH--HHHhcCCchHHHHHHHHHhh
Q 004425 646 MANSKFSILASKRLLDLEPKDAGSFILVSN--MYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~ 695 (754)
.|++++|...++++++++|++...+..++. .+...|++++|...+++..+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999998888855444 48889999999999887653
No 125
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.65 E-value=2.5e-07 Score=92.34 Aligned_cols=197 Identities=9% Similarity=-0.087 Sum_probs=151.5
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004425 476 SQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEE 555 (754)
Q Consensus 476 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 555 (754)
..|++++|.+++++..+..- .. .+...+++++|...|+. ....|...|++++|+..|++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 46788899999998876421 11 11115788999888765 36778899999999999998
Q ss_pred HHHcCC---CC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCC--C--CccHHHHHHHHHhhcCCHHHHHHHHHh
Q 004425 556 MKREGF---AP-D-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLR--P--ILEHFACMVDLLGRAGRLSEAMNLINS 626 (754)
Q Consensus 556 m~~~g~---~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (754)
..+... .+ . ..+|..+...|...|++++|+..|++..+.+.-. + ...++..+..+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 875321 11 1 2378888899999999999999999987632111 1 13578889999988 999999999976
Q ss_pred C----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc------chHHHHHHHHHhcCCchHHHHHHHH
Q 004425 627 S----PFSES----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA------GSFILVSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 627 ~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (754)
. +...+ ..++..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 11111 56788899999999999999999999999877643 3677888899999999999999998
Q ss_pred Hh
Q 004425 693 MN 694 (754)
Q Consensus 693 m~ 694 (754)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 75
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.65 E-value=3.5e-07 Score=76.77 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-P-FSESPLLWRTLVSVSK 644 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~ 644 (754)
.+..+...+...|++++|..+++++... .+.+...+..++.++.+.|++++|..+++++ . .+.+...|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4444555555555555555555555442 1223444555566666666666666666544 1 2236778888888999
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcC
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQG 681 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 681 (754)
..|++++|...++++++.+|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999988887654
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.64 E-value=2.7e-07 Score=78.25 Aligned_cols=116 Identities=7% Similarity=-0.021 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSK 644 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 644 (754)
.+..+...+...|++++|...|++.... .+.+...+..++.++...|++++|.+.+++. ...| +...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 4444555555555666666665555442 1223445555666666666666666666543 1223 5778888889999
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCch
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLD 684 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 684 (754)
..|++++|...++++++++|+++..+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999988763
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.64 E-value=2.4e-07 Score=83.89 Aligned_cols=117 Identities=13% Similarity=0.114 Sum_probs=73.0
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHhcCCh--HHH
Q 004425 578 SGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFS-ESPLLWRTLVSV-SKLMANS--KFS 652 (754)
Q Consensus 578 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~-~~~~g~~--~~a 652 (754)
.|++++|...++...+. .+.+...+..++.+|...|++++|++.+++. ... .++..|..+..+ +...|+. ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34444555555444431 1223344455555555555555555555443 112 256667777777 6677777 888
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 653 ILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 653 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
...++++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888876553
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.63 E-value=3.2e-07 Score=92.62 Aligned_cols=142 Identities=12% Similarity=0.032 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 530 IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 530 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
...|..+...|.+.|++++|+..|++.++ +.|+...+ ..+++...-. . ....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~~~-~--------~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKAQA-L--------RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHHHH-H--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHHHH-H--------HHHHHHHHHH
Confidence 34566777777778888888888887776 33432100 0011111000 0 0234556666
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHH
Q 004425 610 LLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAA 687 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 687 (754)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++..++..++.++...|++++|.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777666654 2233 68889999999999999999999999999999999999999999999999999994
Q ss_pred -HHHHHH
Q 004425 688 -KVRTTM 693 (754)
Q Consensus 688 -~~~~~m 693 (754)
..+++|
T Consensus 285 ~~~~~~~ 291 (336)
T 1p5q_A 285 KKLYANM 291 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 455555
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=2.8e-07 Score=78.58 Aligned_cols=114 Identities=8% Similarity=-0.034 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PF-SESPLLWRTLVSVSK 644 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~ 644 (754)
.+..+...+...|++++|..+|++..+ -.+.+...+..++.+|...|++++|++.+++. .. +.+...|..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 444444445555555555555554433 11113344555555555555555555555443 11 235778888888889
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCC
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGM 682 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 682 (754)
..|++++|...++++++++|++...+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999887764
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.62 E-value=2.9e-07 Score=77.74 Aligned_cols=117 Identities=6% Similarity=-0.042 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 680 (754)
.+..++..+.+.|++++|++.+++. ...| ++..|..+..++...|++++|+..++++++++|+++..|..++.+|...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 4556666777777777777777654 2233 6888999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHH
Q 004425 681 GMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDE 739 (754)
Q Consensus 681 g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 739 (754)
|++++|...+++..+.... ....|....+...+..+..+
T Consensus 86 ~~~~~A~~~~~~al~~~p~--------------------~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 86 KEYASALETLDAARTKDAE--------------------VNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp TCHHHHHHHHHHHHHHHHH--------------------HHTTTTHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHhCcc--------------------cCCchhHHHHHHHHHHHHHh
Confidence 9999999999987653211 01246666677777665544
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.60 E-value=8.2e-08 Score=91.65 Aligned_cols=181 Identities=8% Similarity=-0.049 Sum_probs=116.3
Q ss_pred hcCCHHHHHHHHhccCC--C-ChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHcCCCCCHH--------------
Q 004425 511 KCGSIDGAFQIFKGISD--R-DIVSWNAM-------LSAYALHGLGKGALLLFEEMKREGFAPDDI-------------- 566 (754)
Q Consensus 511 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 566 (754)
..++...|.+.|.++.+ | ....|..+ ...+...++..+++..+++-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 45667777777776643 2 33566666 4555555555555555555443 333321
Q ss_pred --------HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----H
Q 004425 567 --------SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESP----L 634 (754)
Q Consensus 567 --------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 634 (754)
....+..++...|++++|.+.|+.+.. ..|+......+...+.+.|++++|++.++.....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123345567777888888888877643 2343325556666777888888888888765433433 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhccC--CC-CcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 635 LWRTLVSVSKLMANSKFSILASKRLLDLE--PK-DAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 635 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
++..+..++...|+.++|+..++++..-. |. .+.....++.++.+.|+.++|...++++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 56677777888888888888888887543 44 4457777888888888888888888877663
No 133
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.58 E-value=1.1e-06 Score=82.19 Aligned_cols=173 Identities=10% Similarity=-0.074 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-CChhHHHHHHHHHHHcC----ChHHHHHHHHHHH
Q 004425 483 GRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISD-RDIVSWNAMLSAYALHG----LGKGALLLFEEMK 557 (754)
Q Consensus 483 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 557 (754)
|.+.+.+..+.| ++..+..|...|...+++++|...|++..+ .+..++..|...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344455555543 555666666677777777777777776643 355566666666666 5 7778888887777
Q ss_pred HcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHhh----cCCHHHHHHHHHh
Q 004425 558 REGFAPDDISILGVLQACIY----SGLSEGGICLFNEIEQIYGLRPI---LEHFACMVDLLGR----AGRLSEAMNLINS 626 (754)
Q Consensus 558 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 626 (754)
+.| +...+..|...|.. .+++++|..+|++..+ ..|. ...+..|..+|.. .+++++|++++++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 644 44566666666665 6778888888877744 3332 5667777777777 7778888888876
Q ss_pred CC-CCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHhhccCCC
Q 004425 627 SP-FSESPLLWRTLVSVSKLM-A-----NSKFSILASKRLLDLEPK 665 (754)
Q Consensus 627 ~~-~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p~ 665 (754)
.. ..+++..+..|...+... | |.++|...++++.+....
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 52 224566677777766543 3 788888888888876543
No 134
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.55 E-value=2.1e-07 Score=77.85 Aligned_cols=94 Identities=14% Similarity=0.023 Sum_probs=82.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 680 (754)
.+..++..+.+.|++++|+..+++. ...| +...|..+..++...|+.++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777888889999998888765 3344 7889999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhC
Q 004425 681 GMLDEAAKVRTTMNDL 696 (754)
Q Consensus 681 g~~~~a~~~~~~m~~~ 696 (754)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987653
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.54 E-value=2.8e-07 Score=80.39 Aligned_cols=110 Identities=10% Similarity=-0.039 Sum_probs=76.9
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 004425 561 FAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWR 637 (754)
Q Consensus 561 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 637 (754)
+.|+. ..+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.+++. ...| ++..|.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 44433 35555666666777777777777766552 2224556666777777777777777777654 2233 577888
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHH
Q 004425 638 TLVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 638 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 672 (754)
.+..++...|+.++|+..++++++++|+++.....
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 89999999999999999999999999988766443
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.52 E-value=2.3e-07 Score=80.80 Aligned_cols=99 Identities=6% Similarity=-0.054 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSK 644 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 644 (754)
.+..+...+.+.|++++|...|+++... -+.+...|..+..+|.+.|++++|++.|++. ...| ++..|..+..++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 4444445555555555555555555441 1223444555555555555555555555543 2233 5677888888888
Q ss_pred hcCChHHHHHHHHHhhccCCCCc
Q 004425 645 LMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
..|++++|+..+++++++.|+++
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCHH
Confidence 88888888888888888888743
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.51 E-value=7.9e-07 Score=84.87 Aligned_cols=134 Identities=10% Similarity=-0.025 Sum_probs=74.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHHhhc
Q 004425 537 LSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI--LEHFACMVDLLGRA 614 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~ 614 (754)
...+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|+.... .. .|. ...+..+..++.+.
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHHHHC
Confidence 3444445555555555554443 223333333333345555555555555543321 00 110 12344556666666
Q ss_pred CCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHH
Q 004425 615 GRLSEAMNLINSS---PFSE--SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSN 675 (754)
Q Consensus 615 g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 675 (754)
|++++|++.+++. +..| .+..+..+..+++..|+.++|...++++++.+|+ +.++..|.+
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 6666666666654 1113 2346667777788888888888888888888888 666665543
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.51 E-value=8.4e-08 Score=88.74 Aligned_cols=170 Identities=6% Similarity=-0.094 Sum_probs=99.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004425 504 ALITMYAKCGSIDGAFQIFKGISD---RDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGL 580 (754)
Q Consensus 504 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 580 (754)
..+......|+++++.+.|+.-.. .....|..+...+...|++++|+..|++.++ +.|+...+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~ 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------H
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------h
Confidence 334445556666666666654432 1334566677777777888888888877776 33322100000 0
Q ss_pred HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004425 581 SEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKR 658 (754)
Q Consensus 581 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 658 (754)
...-. ..+ ....+..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...+++
T Consensus 79 ~~~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 79 LLDKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 00000 000 0234556667777777777777777654 2233 678888999999999999999999999
Q ss_pred hhccCCCCcchHHHHHHHHHhcCCchHHH-HHHHHHh
Q 004425 659 LLDLEPKDAGSFILVSNMYAGQGMLDEAA-KVRTTMN 694 (754)
Q Consensus 659 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~ 694 (754)
+++++|++...+..++.++...|+.+++. ..++.|-
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998888877 4455553
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.50 E-value=7.6e-07 Score=73.02 Aligned_cols=98 Identities=11% Similarity=0.067 Sum_probs=81.7
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC--CcchHHHHHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-PF-SESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK--DAGSFILVSNM 676 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 676 (754)
...+..++..+.+.|++++|...+++. .. +.+...|..+...+...|++++|...++++++.+|+ +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445666777777888888888877654 22 236788889999999999999999999999999999 99999999999
Q ss_pred HHhc-CCchHHHHHHHHHhhCCC
Q 004425 677 YAGQ-GMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 677 ~~~~-g~~~~a~~~~~~m~~~~~ 698 (754)
|... |++++|.+.+++......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999998866443
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.50 E-value=1.4e-06 Score=77.53 Aligned_cols=106 Identities=12% Similarity=-0.003 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 004425 566 ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVS 643 (754)
Q Consensus 566 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 643 (754)
..+..+...+...|++++|+.+|++..+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34555556666666666666666666542 1123344555555555555555555555433 1222 355555555555
Q ss_pred HhcCChHHHHHHHHHhhccCCCCcchHHHH
Q 004425 644 KLMANSKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 644 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
...|++++|+..++++++++|++...+...
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 555555555555555555555555544333
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.50 E-value=2.5e-06 Score=78.90 Aligned_cols=156 Identities=13% Similarity=0.021 Sum_probs=79.4
Q ss_pred hcCCHHHHHH---HHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHH
Q 004425 511 KCGSIDGAFQ---IFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKRE----GFAPD-DISILGVLQACIYSGLSE 582 (754)
Q Consensus 511 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 582 (754)
..|++++|.+ .+..-......++..+...+...|++++|+..+++.++. +..|. ...+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 333322223345555566666666666666666655531 11111 124445555555556666
Q ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004425 583 GGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSE--SPLLWRTLVSVSKLMANSKFSILASKRLL 660 (754)
Q Consensus 583 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 660 (754)
+|..++++..+... ..+..+ ....+..+...+...|++++|...+++++
T Consensus 84 ~A~~~~~~al~~~~-----------------------------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELLA-----------------------------SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHH-----------------------------HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----------------------------HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 65555555443211 011011 12344555556666666666666666666
Q ss_pred ccCCC--C----cchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 661 DLEPK--D----AGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 661 ~~~p~--~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++.+. + ...+..++.+|...|++++|.+.+++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 54221 1 12356777778888888888777766543
No 142
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.49 E-value=1.7e-05 Score=78.25 Aligned_cols=158 Identities=11% Similarity=-0.013 Sum_probs=119.5
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCC-----Ch---h-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH----HHHHH
Q 004425 505 LITMYAKCGSIDGAFQIFKGISDR-----DI---V-SWNAMLSAYALHGLGKGALLLFEEMKREGFA-PDD----ISILG 570 (754)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~~~~~-----~~---~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ 570 (754)
.+..+...|++++|...+++..+. +. . .+..+...+...|++++|+..|++.++.... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788899999999999886431 11 1 2334666777778999999999999984333 222 26888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhC----CCCC-ccHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIYG----LRPI-LEHFACMVDLLGRAGRLSEAMNLINSS-------PFSES-PLLWR 637 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 637 (754)
+..+|...|++++|..+|+++.+... ..+. ..++..++.+|.+.|++++|++++++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999875321 1111 237889999999999999999998754 22222 67888
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHhhcc
Q 004425 638 TLVSVSKLMAN-SKFSILASKRLLDL 662 (754)
Q Consensus 638 ~l~~~~~~~g~-~~~a~~~~~~~~~~ 662 (754)
.+..++...|+ .++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 69999999998864
No 143
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.48 E-value=0.00014 Score=77.17 Aligned_cols=100 Identities=14% Similarity=0.008 Sum_probs=58.5
Q ss_pred cCC-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCC-HhHH
Q 004425 136 DDG-DYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGC-FREA 213 (754)
Q Consensus 136 ~~~-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A 213 (754)
+.| +...|..+|+.+... -|. ++.+.+.++|+..+.. .|++.+|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377777777777543 122 7888888888887763 4688888877777666653 3344
Q ss_pred HHHhccCC------CCCcchHHHHHHHHH----HcCChhHHHHHHHHhHH
Q 004425 214 ENVFRGLA------YKDVRCVNFMILEYN----KAGESEMAFHVFVHLLS 253 (754)
Q Consensus 214 ~~~~~~~~------~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~ 253 (754)
..+|+... ..+...|...+.-+. .+++.+.+..+|++...
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 44554322 124456666665443 23556677777777765
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.47 E-value=1e-06 Score=75.58 Aligned_cols=97 Identities=11% Similarity=0.075 Sum_probs=78.5
Q ss_pred CccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 600 ILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 600 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
+...+..++..+...|++++|+..+++. ...| ++..|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3455666667777777777777776644 2233 5788888999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHhhC
Q 004425 678 AGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 678 ~~~g~~~~a~~~~~~m~~~ 696 (754)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999999887653
No 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.44 E-value=4.5e-07 Score=78.50 Aligned_cols=108 Identities=7% Similarity=-0.052 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSK 644 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 644 (754)
.+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.+++. ...| ++..|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444455555566666666666655441 1223445555666666666666666666543 2223 5677888888889
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHH
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNM 676 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 676 (754)
..|++++|...++++++++|+++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999999999888766554443
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.43 E-value=6e-07 Score=75.83 Aligned_cols=93 Identities=6% Similarity=-0.026 Sum_probs=75.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc-------hHHHH
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG-------SFILV 673 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 673 (754)
.+..++..+.+.|++++|++.|++. ...| ++..|..+..++...|++++|+..++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3455667777777777777777654 3334 6888999999999999999999999999999988654 67788
Q ss_pred HHHHHhcCCchHHHHHHHHHhh
Q 004425 674 SNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 674 ~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
|.+|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8999999999999999987644
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.43 E-value=1e-06 Score=79.60 Aligned_cols=128 Identities=13% Similarity=0.123 Sum_probs=97.6
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHH-HhhcCCH-
Q 004425 541 ALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDL-LGRAGRL- 617 (754)
Q Consensus 541 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~- 617 (754)
...|++++|+..+++..+. .| +...+..+...+...|++++|..+|+++.+. .+.+...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 3567888888888888873 35 4467888888888999999999999888763 12345677778888 7788888
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHH
Q 004425 618 -SEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 618 -~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 672 (754)
++|.+.++++ ...| +...|..+...+...|++++|...++++++++|++......
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 9999888765 2334 68889999999999999999999999999999998665443
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.43 E-value=2.9e-06 Score=70.18 Aligned_cols=105 Identities=8% Similarity=-0.039 Sum_probs=54.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 004425 571 VLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMAN 648 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 648 (754)
+...+...|++++|...|++.... .+.+...+..++.++.+.|++++|.+.+++. ...| +...|..+..++...|+
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh
Confidence 333344444444444444444331 1112233334444444444444444444332 1122 45666677777777777
Q ss_pred hHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 649 SKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 649 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
+++|...++++++.+|+++..+..++.+.
T Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 88 FEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 77777777777777777776666665543
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.41 E-value=1.9e-06 Score=73.30 Aligned_cols=95 Identities=11% Similarity=0.057 Sum_probs=86.7
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYA 678 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 678 (754)
...+..++..+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 456788999999999999999999875 4444 78899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhh
Q 004425 679 GQGMLDEAAKVRTTMND 695 (754)
Q Consensus 679 ~~g~~~~a~~~~~~m~~ 695 (754)
..|++++|...+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999998765
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=1.6e-06 Score=71.76 Aligned_cols=96 Identities=8% Similarity=0.065 Sum_probs=85.9
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYA 678 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 678 (754)
...+..++..+...|++++|.+.+++. ...| ++..|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345777888999999999999999876 2234 78899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhhC
Q 004425 679 GQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 679 ~~g~~~~a~~~~~~m~~~ 696 (754)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 999999999999987653
No 151
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.40 E-value=1.4e-06 Score=77.35 Aligned_cols=130 Identities=10% Similarity=0.048 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhC-----CCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYG-----LRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVS 641 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 641 (754)
.+......+.+.|++++|+..|++...... -.|+...+ .-+ .+.+..+|..+..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-----------------~~~----~~~~~~~~~nla~ 71 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-----------------VEL----DRKNIPLYANMSQ 71 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------HHH----HHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------HHH----HHHHHHHHHHHHH
Confidence 555666677777777777777776655100 00110000 000 0113567888889
Q ss_pred HHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEecCCC
Q 004425 642 VSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGK 721 (754)
Q Consensus 642 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 721 (754)
++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l------------------------- 126 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN------------------------- 126 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc-------------------------
Confidence 9999999999999999999999999999999999999999999999999887553
Q ss_pred CCCChH-HHHHHHHHHHHHHHHc
Q 004425 722 DHPESE-EIYSKLDLLNDEMKLK 743 (754)
Q Consensus 722 ~~~~~~-~~~~~l~~l~~~~~~~ 743 (754)
.|... .+...|..+...+++.
T Consensus 127 -~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 127 -HPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp -CGGGHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHHH
Confidence 34444 5677777777766643
No 152
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.40 E-value=2.2e-05 Score=77.56 Aligned_cols=209 Identities=11% Similarity=0.026 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhccCC---CChhHHHHHHHHHHHc-C-ChHHHHHHHHH
Q 004425 482 RGRSLHAYSIKTGYAADVIVGNALITMYAKCG-SIDGAFQIFKGISD---RDIVSWNAMLSAYALH-G-LGKGALLLFEE 555 (754)
Q Consensus 482 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~~~~~ 555 (754)
+|.++.+.++..+ +-+..+|+.--..+...| .+++++.+++.+.. .+..+|+.-...+... + +++++++++++
T Consensus 72 ~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 72 RALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3444444444433 223333444444444555 36666666666543 3445566555555554 5 66677777777
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCC-------HHH
Q 004425 556 MKREGFAP-DDISILGVLQACIYSGLSE--------GGICLFNEIEQIYGLRPILEHFACMVDLLGRAGR-------LSE 619 (754)
Q Consensus 556 m~~~g~~p-~~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~ 619 (754)
+++ ..| |...|+.-...+.+.|.++ +++++++++.+. -.-+-..|+....++.+.++ +++
T Consensus 151 ~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 151 SLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 766 334 3445555555554444444 677777777662 22344556666666666665 577
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh--------------------HHHHHHHHHhhccC------CCCcchHH
Q 004425 620 AMNLINSS-PFSE-SPLLWRTLVSVSKLMANS--------------------KFSILASKRLLDLE------PKDAGSFI 671 (754)
Q Consensus 620 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~~~~ 671 (754)
++++++++ ...| |...|+-+...+...|+. ........++.... +..+.+..
T Consensus 227 ELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 227 ELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 77777654 3334 788888877777766654 22222333333222 45667889
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhh
Q 004425 672 LVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 672 ~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.|+++|...|+.++|.++++.+.+
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Confidence 999999999999999999999864
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.40 E-value=1.1e-05 Score=79.58 Aligned_cols=162 Identities=10% Similarity=-0.067 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC--C-Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---CC--HH
Q 004425 501 VGNALITMYAKCGSIDGAFQIFKGISD--R-DI------VSWNAMLSAYALHGLGKGALLLFEEMKREGFA---PD--DI 566 (754)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~ 566 (754)
.+...+..+...|++++|.+.++...+ + .. ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566778888999999888875432 1 11 22344556677788999999999988863221 22 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-----ccHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CH
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-----LEHFACMVDLLGRAGRLSEAMNLINSS-------PFSE-SP 633 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~ 633 (754)
+++.+...|...|++++|..+|+++.+.....|+ ...+..++.+|.+.|++++|++.+++. .... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999999988742222222 147888999999999999999998754 1111 16
Q ss_pred HHHHHHHHHHHhcCChHHH-HHHHHHhhcc
Q 004425 634 LLWRTLVSVSKLMANSKFS-ILASKRLLDL 662 (754)
Q Consensus 634 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 662 (754)
.++..+..++...|+.++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7788889999999999999 7778887764
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.38 E-value=2.9e-06 Score=75.49 Aligned_cols=93 Identities=12% Similarity=-0.061 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
..|..+...+...|++++|+..|++.++ +.| +...|..+..++...|++++|+..|++..+. .+.+...|..+..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3455555666666666666666666665 334 3345555555666666666666666666541 1222445556666
Q ss_pred HHhhcCCHHHHHHHHHhC
Q 004425 610 LLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~ 627 (754)
+|.+.|++++|++.+++.
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 666666666666666543
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.36 E-value=2.8e-06 Score=71.54 Aligned_cols=109 Identities=6% Similarity=-0.113 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 004425 568 ILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKL 645 (754)
Q Consensus 568 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 645 (754)
+..+...+...|++++|+..|++..+. .+.+...|..++.+|.+.|++++|++.+++. ...| ++..|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 333444444444555555554444431 1122344445555555555555555555433 1223 57778888888888
Q ss_pred cCChHHHHHHHHHhhccC------CCCcchHHHHHHHHH
Q 004425 646 MANSKFSILASKRLLDLE------PKDAGSFILVSNMYA 678 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 678 (754)
.|++++|...++++++++ |++...+..+..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 899999999999999988 887777777766543
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=5.1e-06 Score=72.09 Aligned_cols=115 Identities=10% Similarity=-0.038 Sum_probs=69.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHH
Q 004425 529 DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD----DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHF 604 (754)
Q Consensus 529 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 604 (754)
+...|..+...+...|++++|+..|++..+ ..|+ ...+..+..++...|++++|...+++..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------- 94 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---------- 94 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----------
Confidence 334555555555555666666666665555 3344 233444444444444444444444444331
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 605 ACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 605 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
.+.+...|..+..++...|++++|...++++++++|++...+..+..+...
T Consensus 95 ------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 95 ------------------------DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp ------------------------TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred ------------------------CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 122566777788888888888888888888888888888777777666543
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.35 E-value=2.7e-06 Score=71.24 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=86.2
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-P-FSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYA 678 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 678 (754)
...+..++..+.+.|++++|.+.++++ . .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456778899999999999999999876 2 23468899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhhC
Q 004425 679 GQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 679 ~~g~~~~a~~~~~~m~~~ 696 (754)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988653
No 158
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.33 E-value=1.4e-06 Score=74.83 Aligned_cols=106 Identities=10% Similarity=0.022 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSE-SPLLWRTLVSVSKL 645 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~ 645 (754)
.+......+...|++++|+..|++..+-..-.|+. +.....| +...|..+..++..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~-----------------------~a~~~~~~~a~a~~n~g~al~~ 69 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE-----------------------EAFDHAGFDAFCHAGLAEALAG 69 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT-----------------------SCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch-----------------------hhhhhccchHHHHHHHHHHHHH
Confidence 34455556666777777777777765521111111 0000001 24488888888889
Q ss_pred cCChHHHHHHHHHhhcc-------CCCCcchH----HHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 646 MANSKFSILASKRLLDL-------EPKDAGSF----ILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.|++++|+..+++++++ +|+++.+| ..++.++...|++++|+..|++..+
T Consensus 70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999998 99999999 9999999999999999999998755
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.33 E-value=5.3e-06 Score=70.02 Aligned_cols=96 Identities=8% Similarity=0.078 Sum_probs=86.0
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYA 678 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 678 (754)
...+..++..+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 456778889999999999999999875 2233 68899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhhC
Q 004425 679 GQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 679 ~~g~~~~a~~~~~~m~~~ 696 (754)
..|++++|...+++..+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 999999999999987653
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.33 E-value=1.5e-05 Score=73.52 Aligned_cols=128 Identities=16% Similarity=0.017 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC---------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-C
Q 004425 499 VIVGNALITMYAKCGSIDGAFQIFKGISD---------RDIVSWNAMLSAYALHGLGKGALLLFEEMKRE----GFAP-D 564 (754)
Q Consensus 499 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~ 564 (754)
..++..+...|...|++++|...|++... ....++..+...|...|++++|+..+++..+. +-.| .
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 44455555556666666666665554432 12245667777788888888888888777652 1122 1
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHhhcCCHHHHHHHHHh
Q 004425 565 -DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI----LEHFACMVDLLGRAGRLSEAMNLINS 626 (754)
Q Consensus 565 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (754)
...+..+...+...|++++|..++++......-..+ ...+..+..++...|++++|.+.+++
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 235667777788888888888888777542111111 11234555555555665555555544
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=3.8e-06 Score=72.95 Aligned_cols=95 Identities=13% Similarity=0.115 Sum_probs=82.4
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-PFSES----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSN 675 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 675 (754)
...+..++..+...|++++|.+.+++. ...|+ ...|..+...+...|++++|+..++++++++|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 455667777788888888888888754 44565 6788889999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHhh
Q 004425 676 MYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 676 ~~~~~g~~~~a~~~~~~m~~ 695 (754)
+|...|++++|...+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998765
No 162
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.30 E-value=1.2e-06 Score=93.04 Aligned_cols=116 Identities=7% Similarity=0.007 Sum_probs=80.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 004425 575 CIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFS 652 (754)
Q Consensus 575 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 652 (754)
+...|++++|.+.|++..+. -+.+...|..++.+|.+.|++++|++.+++. ...| +...|..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455555555555555441 1122445556666666666666666666543 2334 678899999999999999999
Q ss_pred HHHHHHhhccCCCCcchHHHHHHH--HHhcCCchHHHHHHHH
Q 004425 653 ILASKRLLDLEPKDAGSFILVSNM--YAGQGMLDEAAKVRTT 692 (754)
Q Consensus 653 ~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 692 (754)
+..++++++++|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999998 8899999999999884
No 163
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.29 E-value=0.00022 Score=70.43 Aligned_cols=229 Identities=10% Similarity=0.003 Sum_probs=160.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccc-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-CHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDP-VTFSRLLSLSASQA-CLVRGRSLHAYSIKTGYAADVIVGNALITMYAKC-G-SIDG 517 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~ 517 (754)
.+..++|++++++++.. .|+. ..|+.--..+...+ .++++..+++.+.... +-+..+|+.-...+.+. + ++++
T Consensus 67 ~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 55667888888888876 5555 34555555566666 5888888888888765 44666777766666666 6 8889
Q ss_pred HHHHHhccCC---CChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------
Q 004425 518 AFQIFKGISD---RDIVSWNAMLSAYALHGLGK--------GALLLFEEMKREGFAPDDISILGVLQACIYSGL------ 580 (754)
Q Consensus 518 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 580 (754)
++++++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++++.... |...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 9999998876 45567776655555555555 899999999985422 56688888777777775
Q ss_pred -HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCH--------------------HHHHHHHHhCC-C-------CC
Q 004425 581 -SEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRL--------------------SEAMNLINSSP-F-------SE 631 (754)
Q Consensus 581 -~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~-~-------~p 631 (754)
+++++++++++... .+-+...|+-+-.++.+.|+. .+..++..++. . .+
T Consensus 223 ~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 223 SLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 68889998888762 333455666666667666653 44455555441 1 25
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhh-ccCCCCcchHHHHHHH
Q 004425 632 SPLLWRTLVSVSKLMANSKFSILASKRLL-DLEPKDAGSFILVSNM 676 (754)
Q Consensus 632 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~ 676 (754)
.+..+..|+..|...|+.++|.++++.+. +.+|-....|...+..
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 78899999999999999999999999997 6788877666655543
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.29 E-value=8.4e-07 Score=81.91 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 634 LLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 634 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.+|..+..++...|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 68888999999999999999999999999999999999999999999999999999998765
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.28 E-value=3.9e-06 Score=70.91 Aligned_cols=91 Identities=15% Similarity=0.061 Sum_probs=65.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH---HHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC---cchHHHHHHH
Q 004425 605 ACMVDLLGRAGRLSEAMNLINSS-PFSE-SP---LLWRTLVSVSKLMANSKFSILASKRLLDLEPKD---AGSFILVSNM 676 (754)
Q Consensus 605 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 676 (754)
..++..+.+.|++++|.+.++++ ...| ++ ..|..+..++...|++++|...++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34555666667777777666654 1122 22 466777777788888888888888888888887 6668888888
Q ss_pred HHhcCCchHHHHHHHHHhh
Q 004425 677 YAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 677 ~~~~g~~~~a~~~~~~m~~ 695 (754)
|...|++++|...++++..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887655
No 166
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.28 E-value=6.4e-06 Score=86.93 Aligned_cols=143 Identities=9% Similarity=0.070 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 530 IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 530 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
...|..+...|.+.|++++|+..|++.++ +.|+...+ .-+...+ .... ....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~-~~~~--------~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL-----------SEKESKA-SESF--------LLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC-----------CHHHHHH-HHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC-----------ChHHHHH-HHHH--------HHHHHHHHHH
Confidence 34677777777888888888888887776 33332100 0000000 0000 0235666777
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHH
Q 004425 610 LLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAA 687 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 687 (754)
+|.+.|++++|++.++++ ...| +...|..+..++...|++++|+..++++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777654 2233 68889999999999999999999999999999999999999999999999999887
Q ss_pred H-HHHHHh
Q 004425 688 K-VRTTMN 694 (754)
Q Consensus 688 ~-~~~~m~ 694 (754)
+ .+++|-
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 5 455553
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.26 E-value=4.5e-06 Score=88.45 Aligned_cols=114 Identities=7% Similarity=-0.073 Sum_probs=50.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHH
Q 004425 540 YALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLS 618 (754)
Q Consensus 540 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 618 (754)
+.+.|++++|++.|++.++ +.|+ ...+..+..++.+.|++++|+..+++..+ --+.+...+..+..+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 3344555555555555554 2333 23444455555555555555555555543 11122344445555555555555
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCChHHHHHHHH
Q 004425 619 EAMNLINSS-PFSE-SPLLWRTLVSV--SKLMANSKFSILASK 657 (754)
Q Consensus 619 ~A~~~~~~~-~~~p-~~~~~~~l~~~--~~~~g~~~~a~~~~~ 657 (754)
+|++.+++. ...| +...+..+..+ +...|++++|+..++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555433 1112 22233333333 445556666666665
No 168
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.25 E-value=1e-05 Score=71.83 Aligned_cols=126 Identities=6% Similarity=-0.064 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDL 610 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 610 (754)
.|..+...+...|++++|+..|++.++. .| +...+..+..++...|++++|...+++..+. .+.+...+..++.+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 4556666777777777777777777763 34 3456666777777777777777777777662 23345567777777
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH--HHHHHhcCChHHHHHHHHHhhc
Q 004425 611 LGRAGRLSEAMNLINSS-PFSE-SPLLWRTL--VSVSKLMANSKFSILASKRLLD 661 (754)
Q Consensus 611 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~ 661 (754)
+...|++++|.+.+++. ...| +...|..+ +..+...|++++|...+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 77777777777777654 2223 44555333 3335666788888877776544
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=5.4e-06 Score=70.94 Aligned_cols=109 Identities=6% Similarity=-0.120 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 004425 566 ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVS 643 (754)
Q Consensus 566 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 643 (754)
..+..+...+...|++++|...|+..... .+.+...+..++.+|...|++++|+..+++. ...| ++..|..+..++
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 34445555555555555555555555441 1222344555555555555665555555543 1223 577788888888
Q ss_pred HhcCChHHHHHHHHHhhccCCC-----CcchHHHHHHH
Q 004425 644 KLMANSKFSILASKRLLDLEPK-----DAGSFILVSNM 676 (754)
Q Consensus 644 ~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~ 676 (754)
...|++++|+..++++++++|+ +......+..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887 44444444443
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.21 E-value=7.8e-06 Score=69.02 Aligned_cols=93 Identities=6% Similarity=-0.004 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC-------cchHHHH
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS-P-FSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD-------AGSFILV 673 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l 673 (754)
.+..++..+...|++++|...+++. . .+.+...|..+...+...|++++|...++++++..|++ +..+..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4556666677777777777777654 1 22367788888888999999999999999999988876 7789999
Q ss_pred HHHHHhcCCchHHHHHHHHHhh
Q 004425 674 SNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 674 ~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+.+|...|++++|...+++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999999998766
No 171
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.21 E-value=9.9e-07 Score=73.27 Aligned_cols=82 Identities=7% Similarity=0.027 Sum_probs=58.1
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 004425 614 AGRLSEAMNLINSS-PF---SE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAK 688 (754)
Q Consensus 614 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 688 (754)
.|++++|++.+++. .. .| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45666666666544 22 23 466777777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHhh
Q 004425 689 VRTTMND 695 (754)
Q Consensus 689 ~~~~m~~ 695 (754)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777654
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.20 E-value=0.00018 Score=70.74 Aligned_cols=178 Identities=8% Similarity=0.004 Sum_probs=105.5
Q ss_pred HHHHHHHHhccCC---CChhHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q 004425 515 IDGAFQIFKGISD---RDIVSWNAMLSAYALHG--LGKGALLLFEEMKREGFAPDDISILGVLQACIYSGL-SEGGICLF 588 (754)
Q Consensus 515 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 588 (754)
+++++.+++.+.. .+..+|+.-.-.+...| .+++++.+++++.+...+ |...|+.-...+...|. ++++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3455555555432 34456665555555555 366777777777763311 44566665556666666 46677777
Q ss_pred HHHHHHhCCCCCccHHHHHHHHHhhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 004425 589 NEIEQIYGLRPILEHFACMVDLLGRA--------------GRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLM------ 646 (754)
Q Consensus 589 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------ 646 (754)
+.+.+. -+-+...|+....++.+. +.++++++++++. ...| |..+|+-+...+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 766652 223344444444444333 4567777777654 2334 788887666666554
Q ss_pred -----CChHHHHHHHHHhhccCCCCcchHHHHHHHH---HhcCCchHHHHHHHHHhh
Q 004425 647 -----ANSKFSILASKRLLDLEPKDAGSFILVSNMY---AGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 647 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~ 695 (754)
+.+++++..++++++++|++.=.+..++.+. ...|..+++...+.++.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3578888899999999998743333333221 235677788888887765
No 173
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.18 E-value=7.5e-06 Score=82.50 Aligned_cols=112 Identities=10% Similarity=-0.004 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004425 566 ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKL 645 (754)
Q Consensus 566 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 645 (754)
..+..+...+...|++++|+..|++..+. .|+...+ ..+++.+.-. -...+|..+..++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~-----------~~~~~~~~~~-----~~~~~~~nla~~~~~ 208 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSF-----------SNEEAQKAQA-----LRLASHLNLAMCHLK 208 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCC-----------CSHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccC-----------ChHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 46666777777777777777777777652 1221100 0011111100 025788999999999
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 646 MANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 646 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 209 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988664
No 174
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.18 E-value=3.9e-05 Score=82.75 Aligned_cols=168 Identities=10% Similarity=-0.021 Sum_probs=134.9
Q ss_pred CHHHHHHHHhccCC---CChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC
Q 004425 514 SIDGAFQIFKGISD---RDIVSWNAMLSAYALHGL----------GKGALLLFEEMKREGFAP-DDISILGVLQACIYSG 579 (754)
Q Consensus 514 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 579 (754)
.-++|++.++.+.. .+..+|+.--.++...|+ ++++++.++++++ ..| +..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcc
Confidence 34677777777753 344678777667766676 8999999999998 445 4468888888889999
Q ss_pred --CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------
Q 004425 580 --LSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAG-RLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLM-------- 646 (754)
Q Consensus 580 --~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-------- 646 (754)
++++++++++++.+. -+-+...|+.-..++.+.| .+++++++++++ ...| |..+|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 779999999999873 2335567777777888888 899999999877 4445 799999888887763
Q ss_pred ------CChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchH
Q 004425 647 ------ANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDE 685 (754)
Q Consensus 647 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 685 (754)
+.++++.+.++++++++|+|..+|..+.+++...|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999998665
No 175
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.16 E-value=9.8e-06 Score=79.34 Aligned_cols=112 Identities=7% Similarity=-0.126 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 004425 564 DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVS 641 (754)
Q Consensus 564 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 641 (754)
+...+..+...+...|++++|...|++..+. .+.+...|..++.+|.+.|++++|++.+++. ...| +...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4457778888889999999999999988772 2235677888899999999999999988764 4455 5788888888
Q ss_pred HHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 642 VSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 642 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
++...|++++|+..++++++++|+++..+...++..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 899999999999999999999888755444344433
No 176
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.15 E-value=8.2e-06 Score=70.04 Aligned_cols=112 Identities=8% Similarity=-0.005 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--------H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCC
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFAPD--------D-----ISILGVLQACIYSGLSEGGICLFNEIEQIYGLR 598 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 598 (754)
.+......+.+.|++++|+..|++.++ +.|+ . ..|..+..++.+.|++++|+..+++..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~----- 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH----- 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 355667778889999999999999988 5555 1 2677777777788888888777776654
Q ss_pred CCccHHHHHHHHHhhcCCHHHHHHHHH-hCCCCCC-HHHH----HHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHH
Q 004425 599 PILEHFACMVDLLGRAGRLSEAMNLIN-SSPFSES-PLLW----RTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 599 p~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 672 (754)
+|+ .....|| ...| .....++...|++++|+..|+++++++|++...+.-
T Consensus 86 ------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 86 ------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp ------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred ------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 122 2244664 7788 999999999999999999999999999998876554
Q ss_pred HH
Q 004425 673 VS 674 (754)
Q Consensus 673 l~ 674 (754)
+.
T Consensus 142 ~~ 143 (159)
T 2hr2_A 142 KE 143 (159)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.15 E-value=0.00032 Score=68.99 Aligned_cols=224 Identities=12% Similarity=0.054 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcccc----------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-
Q 004425 446 EDVMVLFSQQRLAGMEPDPVT-FSRLLSLSASQAC----------LVRGRSLHAYSIKTGYAADVIVGNALITMYAKCG- 513 (754)
Q Consensus 446 ~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 513 (754)
++|+.++..+... .|+..| |+.--..+...+. ++++..+++.+.... +-+..+|+.-...+.+.|
T Consensus 47 ~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 47 ESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCc
Confidence 4566666666643 455432 3322222222222 567777777777654 446677777666777777
Q ss_pred -CHHHHHHHHhccCC---CChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------
Q 004425 514 -SIDGAFQIFKGISD---RDIVSWNAMLSAYALHGL-GKGALLLFEEMKREGFAPDDISILGVLQACIYS---------- 578 (754)
Q Consensus 514 -~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---------- 578 (754)
.+++++.+++.+.+ .|..+|+--.-.+...|. ++++++.++++++..+. |...|+.....+.+.
T Consensus 124 ~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 124 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccccccc
Confidence 48888888888854 567788877777777787 58899999999984422 455666665555544
Q ss_pred ----CCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHhhc-----------CCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 004425 579 ----GLSEGGICLFNEIEQIYGLRPI-LEHFACMVDLLGRA-----------GRLSEAMNLINSS-PFSESPLLWRTLVS 641 (754)
Q Consensus 579 ----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 641 (754)
+.++++++++..... ..|+ ...|+-+-.++.+. +.++++++.++++ ...||. .|..+..
T Consensus 203 ~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~ 278 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTI 278 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHH
Confidence 457888888888865 2344 44555444444444 4578888888776 445654 4553333
Q ss_pred HH-----HhcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 642 VS-----KLMANSKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 642 ~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
+. ...|..++....+.++.+++|.....|..+..-+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 279 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 22 2357788999999999999999887777765543
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.15 E-value=8.1e-06 Score=83.23 Aligned_cols=137 Identities=8% Similarity=0.001 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC-CccHHHHHHH
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRP-ILEHFACMVD 609 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 609 (754)
..|..+...+.+.|++++|+..|++.++. .|+.. .....+++. ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGA----------KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHH----------HHHHHHHHHHHHHHH
Confidence 45667777788888888888888777751 11100 000111111 1112 2346778888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHH
Q 004425 610 LLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAA 687 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 687 (754)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999998888765 4445 68899999999999999999999999999999999999999999999999888876
Q ss_pred HH
Q 004425 688 KV 689 (754)
Q Consensus 688 ~~ 689 (754)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 179
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.15 E-value=1.3e-05 Score=65.42 Aligned_cols=98 Identities=13% Similarity=0.017 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CC--CHHHHHHHHHHH
Q 004425 568 ILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PF-SE--SPLLWRTLVSVS 643 (754)
Q Consensus 568 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p--~~~~~~~l~~~~ 643 (754)
+..+...+...|++++|...|+++.+. .+.+...+..++.++...|++++|.+.+++. .. +. +...|..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 344444445555555555555555441 1222344455555555555555555555543 11 22 467777888888
Q ss_pred Hhc-CChHHHHHHHHHhhccCCCCc
Q 004425 644 KLM-ANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 644 ~~~-g~~~~a~~~~~~~~~~~p~~~ 667 (754)
... |+.++|...++++++..|.++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888 888888888888888888754
No 180
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.14 E-value=2e-05 Score=66.26 Aligned_cols=61 Identities=5% Similarity=-0.062 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 531 VSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 531 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
.+|..+...+.+.|++++|+..|++.++ +.|+. ..|..+..+|...|++++|+..+++..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3466677777788888888888888777 45544 4677777777888888888887777755
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.14 E-value=1.8e-05 Score=66.76 Aligned_cols=114 Identities=10% Similarity=-0.102 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDL 610 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 610 (754)
.|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|..+++++.... |+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~---------- 70 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE---------- 70 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc----------
Confidence 4555666666666666666666666653 23 33455555556666666666666665554421 00
Q ss_pred HhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 611 LGRAGRLSEAMNLINSSPFSES----PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 611 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
..++ ..+|..+..++...|++++|...++++++..| ++.....++.++..
T Consensus 71 ------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 71 ------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp ------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 0112 55667777778888888888888888888887 46666666655544
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.14 E-value=7.2e-06 Score=82.66 Aligned_cols=145 Identities=10% Similarity=-0.016 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLL 611 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 611 (754)
.|..+...+.+.|++++|+..|++.+. +.|+...+ ...|+.+++...+. ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-------~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMF-------QLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHH-------TCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchhh-------hhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 466677788888999999999999887 45654421 22333333332221 12677888889
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHH-HHhcCCchHHHH
Q 004425 612 GRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNM-YAGQGMLDEAAK 688 (754)
Q Consensus 612 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~a~~ 688 (754)
.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|+.+ ....+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888765 3334 688899999999999999999999999999999999999999988 445577888888
Q ss_pred HHHHHhhC
Q 004425 689 VRTTMNDL 696 (754)
Q Consensus 689 ~~~~m~~~ 696 (754)
.+++|-..
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 88877543
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.13 E-value=1e-05 Score=67.44 Aligned_cols=96 Identities=9% Similarity=-0.033 Sum_probs=55.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 004425 570 GVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMA 647 (754)
Q Consensus 570 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 647 (754)
.+...+.+.|++++|+..|++..+. -+.+...+..+..++.+.|++++|++.+++. ...| +...|..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3344455555555555555555441 1223444555555555555566655555543 2234 5777888888888888
Q ss_pred ChHHHHHHHHHhhccCCCCc
Q 004425 648 NSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 648 ~~~~a~~~~~~~~~~~p~~~ 667 (754)
+.++|+..++++++++|+++
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 88899999999998888754
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=1.3e-05 Score=84.22 Aligned_cols=163 Identities=8% Similarity=-0.140 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHh---CCCCC-cc
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREG-FAPDDI----SILGVLQACIYSGLSEGGICLFNEIEQIY---GLRPI-LE 602 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~ 602 (754)
++..+...|...|++++|.++++++...- -.++.. ..+.+-..+...|.+++|..+++...... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667888888888888888888776421 111221 22223333445678888888888765521 22222 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC---C----c
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS-------PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK---D----A 667 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~----~ 667 (754)
.+..++..|...|++++|.+++++. ..++ ...++..++..|...|++++|...+++++...+. + .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6678888999999999998888754 1122 3567888889999999999999999998876432 1 2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 668 GSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
..+..++.++...|+|++|...+.+.-
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 457778888999999999998876663
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.11 E-value=1.6e-05 Score=70.07 Aligned_cols=135 Identities=14% Similarity=0.093 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHH
Q 004425 532 SWNAMLSAYALHGLGKGALLLFEEMKREGFA-PDD----ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFAC 606 (754)
Q Consensus 532 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 606 (754)
++..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|..++++..+..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------- 79 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA----------- 79 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------
Confidence 4556666666777777777777666542111 111 244455555555566666665555544310
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC------CcchHHHHHHHHHh
Q 004425 607 MVDLLGRAGRLSEAMNLINSSPFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK------DAGSFILVSNMYAG 679 (754)
Q Consensus 607 l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~ 679 (754)
...+..+ ...++..+...+...|++++|...+++++++.+. ....+..++.+|..
T Consensus 80 ------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 80 ------------------RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp ------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------HHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 0001001 1345566667777777777777777777765322 24568888999999
Q ss_pred cCCchHHHHHHHHHhh
Q 004425 680 QGMLDEAAKVRTTMND 695 (754)
Q Consensus 680 ~g~~~~a~~~~~~m~~ 695 (754)
.|++++|.+.+++..+
T Consensus 142 ~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999998887654
No 186
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.11 E-value=3.9e-05 Score=64.62 Aligned_cols=103 Identities=7% Similarity=-0.060 Sum_probs=59.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C---HHHHHHHHHHHH
Q 004425 573 QACIYSGLSEGGICLFNEIEQIYGLRPIL---EHFACMVDLLGRAGRLSEAMNLINSS-PFSE-S---PLLWRTLVSVSK 644 (754)
Q Consensus 573 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~---~~~~~~l~~~~~ 644 (754)
..+...|++++|...|+.+.+.. +.+. ..+..++.++.+.|++++|.+.+++. ...| + +..+..+..++.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 34444455555555555544311 1111 24444555555555555555555443 1122 2 566777778888
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNMY 677 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 677 (754)
..|+.++|...++++++..|+++.....+..+-
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 888999999999999998888776655554443
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.10 E-value=1.5e-05 Score=83.86 Aligned_cols=97 Identities=7% Similarity=-0.068 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhc-----cCCCCc
Q 004425 603 HFACMVDLLGRAGRLSEAMNLINSS---------PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLD-----LEPKDA 667 (754)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~ 667 (754)
+++.|+.+|...|++++|+.++++. +..|+ ..+++.|...|...|++++|+.+++++++ +.|+++
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4555555555556665555555432 33444 55677888888888888888888888876 467765
Q ss_pred c---hHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004425 668 G---SFILVSNMYAGQGMLDEAAKVRTTMNDLRLS 699 (754)
Q Consensus 668 ~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 699 (754)
. ....|+.++...|++++|+.+++++++...+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 4567888899999999999999999885543
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.07 E-value=1.4e-06 Score=71.35 Aligned_cols=92 Identities=10% Similarity=0.003 Sum_probs=75.2
Q ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC------cchHHH
Q 004425 601 LEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD------AGSFIL 672 (754)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 672 (754)
...+..+...+.+.|++++|++.+++. ...| ++..|..+..++...|++++|+..++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345666777777888888888877754 2233 68889999999999999999999999999999998 778889
Q ss_pred HHHHHHhcCCchHHHHHHHH
Q 004425 673 VSNMYAGQGMLDEAAKVRTT 692 (754)
Q Consensus 673 l~~~~~~~g~~~~a~~~~~~ 692 (754)
++.++...|++++|...+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 99999999988887766654
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.06 E-value=8.4e-06 Score=72.23 Aligned_cols=124 Identities=14% Similarity=-0.019 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccH
Q 004425 530 IVSWNAMLSAYALHGLGKGALLLFEEMKREG------FAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEH 603 (754)
Q Consensus 530 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 603 (754)
...|......+.+.|++++|+..|++.++.- -.|+...+ ..+. +-....
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~~-----~~~~~~ 65 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VELD-----RKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHHH-----HTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHHH-----HHHHHH
Confidence 3567888899999999999999999998730 01211100 0000 011234
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc-chHHHHHHHHH
Q 004425 604 FACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA-GSFILVSNMYA 678 (754)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~ 678 (754)
|..+..+|.+.|++++|+..+++. ...| ++..|..+..++...|++++|...++++++++|+++ .....+..+..
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 555566666666666666666543 2234 578888999999999999999999999999999987 55555555443
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.02 E-value=3.3e-06 Score=70.03 Aligned_cols=92 Identities=10% Similarity=0.067 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHHhC--CCCCccHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 004425 579 GLSEGGICLFNEIEQIYG--LRPILEHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSIL 654 (754)
Q Consensus 579 g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 654 (754)
|++++|+..|++..+ .+ -+.+...+..++.+|.+.|++++|++.+++. ...| ++..+..+..++...|++++|+.
T Consensus 4 g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 444555555555433 11 0112334555555555666666666655543 2223 57778888888888899999999
Q ss_pred HHHHhhccCCCCcchHH
Q 004425 655 ASKRLLDLEPKDAGSFI 671 (754)
Q Consensus 655 ~~~~~~~~~p~~~~~~~ 671 (754)
.++++++..|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999998888776544
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.02 E-value=1.9e-05 Score=63.15 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 631 ESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.++..|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36889999999999999999999999999999999999999999999999999999999998755
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.02 E-value=2.2e-05 Score=79.99 Aligned_cols=112 Identities=9% Similarity=0.034 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 004425 565 DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSE-SPLLWRTLVSVS 643 (754)
Q Consensus 565 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~ 643 (754)
...+..+...+.+.|++++|+..|++..+... . .......+++.+ ..| +..+|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~---~----------~~~~~~~~~~~~------~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE---G----------SRAAAEDADGAK------LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---H----------HHHHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh---c----------CccccChHHHHH------HHHHHHHHHHHHHHHH
Confidence 34577777788888889988888888766210 0 000011111111 223 567889999999
Q ss_pred HhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 644 KLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 644 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998765
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.00 E-value=2.6e-05 Score=68.61 Aligned_cols=95 Identities=13% Similarity=-0.062 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----
Q 004425 499 VIVGNALITMYAKCGSIDGAFQIFKGISD-----RDI----VSWNAMLSAYALHGLGKGALLLFEEMKREGFA-PD---- 564 (754)
Q Consensus 499 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~---- 564 (754)
..++..+...|...|++++|...+++..+ .+. .++..+...|...|++++|+..+++..+..-. ++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678888999999999999999988753 222 47888999999999999999999998752111 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 565 DISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 565 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
...+..+...+...|++++|..++++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23566677778888888888888877655
No 194
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.98 E-value=5.1e-05 Score=80.00 Aligned_cols=131 Identities=8% Similarity=-0.044 Sum_probs=92.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHH
Q 004425 545 LGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNL 623 (754)
Q Consensus 545 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 623 (754)
++++|+..|+...+ ..|+. ..+..+...+.+.|++++|+..|+++.+...-.+... -++..+
T Consensus 249 ~~~~A~~~~~~~~~--~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~--------------~~~~~~- 311 (457)
T 1kt0_A 249 SFEKAKESWEMDTK--EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS--------------EKESKA- 311 (457)
T ss_dssp EEECCCCGGGSCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC--------------HHHHHH-
T ss_pred hcccCcchhhcCHH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC--------------hHHHHH-
Confidence 33444444443333 23333 4677777788888888888888888766321111100 011111
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 624 INSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 624 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
.+. -...+|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 312 ~~~----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 312 SES----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 000 025678889999999999999999999999999999999999999999999999999999988664
No 195
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.00012 Score=76.72 Aligned_cols=158 Identities=13% Similarity=-0.018 Sum_probs=119.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc
Q 004425 538 SAYALHGLGKGALLLFEEMKREGFAPDD----------------ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL 601 (754)
Q Consensus 538 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 601 (754)
..+.+.|++++|++.|.++++....... ..+..+...|...|++++|.+++..+....+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4566778899999998888874322111 246788899999999999999999987643333322
Q ss_pred ----cHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhccC------
Q 004425 602 ----EHFACMVDLLGRAGRLSEAMNLINSS-------PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLDLE------ 663 (754)
Q Consensus 602 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------ 663 (754)
...+.+...+...|++++|.++++.. ...+. ..++..|...+...|++++|...+++++...
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23445556667789999999888654 22332 6678889999999999999999999987642
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 664 PKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 664 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
|.....|..++.+|...|++++|...+++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345899999999999999999999988754
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.91 E-value=4.1e-05 Score=59.68 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=61.2
Q ss_pred cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHh
Q 004425 602 EHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAG 679 (754)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 679 (754)
..+..+...+.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 34555666666667777776666544 2223 577888888889999999999999999999999999999999988876
Q ss_pred cC
Q 004425 680 QG 681 (754)
Q Consensus 680 ~g 681 (754)
.|
T Consensus 90 ~g 91 (91)
T 1na3_A 90 QG 91 (91)
T ss_dssp HC
T ss_pred cC
Confidence 54
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.90 E-value=2.5e-05 Score=64.32 Aligned_cols=77 Identities=14% Similarity=0.085 Sum_probs=65.7
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 619 EAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 619 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+|++.+++. ...| ++..|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555433 3334 6889999999999999999999999999999999999999999999999999999999998765
No 198
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.89 E-value=6.3e-05 Score=58.66 Aligned_cols=69 Identities=14% Similarity=0.064 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004425 630 SESPLLWRTLVSVSKLMAN---SKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 630 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 698 (754)
++|+..|..+..++...++ .++|..+++++++++|+++.+...++.++...|++++|...|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4578899999998876655 79999999999999999999999999999999999999999999977554
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.88 E-value=8.3e-06 Score=69.85 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=67.0
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hHHHHHHHHHhhccCCCCcchHHHHHHHHHhc
Q 004425 613 RAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMAN----------SKFSILASKRLLDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 613 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 680 (754)
+.+++++|++.+++. ...| ++..|..+..++...++ +++|+..++++++++|+++.+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445666777666644 2334 67777777777776655 46999999999999999999999999999987
Q ss_pred C-----------CchHHHHHHHHHhhCC
Q 004425 681 G-----------MLDEAAKVRTTMNDLR 697 (754)
Q Consensus 681 g-----------~~~~a~~~~~~m~~~~ 697 (754)
| ++++|...|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999887643
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.87 E-value=2.2e-05 Score=82.51 Aligned_cols=114 Identities=12% Similarity=0.113 Sum_probs=85.5
Q ss_pred HhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhc-----cCCCCc---chHHH
Q 004425 611 LGRAGRLSEAMNLINSS---------PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLD-----LEPKDA---GSFIL 672 (754)
Q Consensus 611 ~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~ 672 (754)
+..+|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|+++ ..+..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566666666665432 23343 56788999999999999999999999987 345554 46889
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 004425 673 VSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGCSWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMKL 742 (754)
Q Consensus 673 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 742 (754)
|+.+|..+|++++|+.++++..+...+ .-...||...++...|.+...++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987552111 1124799999999999988877664
No 201
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.81 E-value=2.6e-05 Score=78.55 Aligned_cols=114 Identities=9% Similarity=-0.061 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004425 565 DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSK 644 (754)
Q Consensus 565 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 644 (754)
...+..+...+.+.|++++|...|++.... .|+.. .+...|+.+++...+.. ..|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~~-------~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVKN-------PCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHHT-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHHH-------HHHHHHHHHHH
Confidence 345667777788888999999998887662 23221 12344555555544421 37888999999
Q ss_pred hcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 645 LMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 645 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
..|++++|+..++++++++|++..+|..++.+|...|++++|...+++..+
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998654
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.75 E-value=0.00021 Score=60.88 Aligned_cols=111 Identities=8% Similarity=-0.083 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHH
Q 004425 580 LSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKL----MANSKFSILA 655 (754)
Q Consensus 580 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 655 (754)
++++|..+|++..+ .| .| ... |..+|...+.+++|.+++++.....++..+..|...+.. .+|.++|...
T Consensus 10 d~~~A~~~~~~aa~-~g-~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACE-LN-EM--FGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHH-TT-CT--THH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CC-CH--hhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 45566666666655 23 11 122 556666666666666666655333566677777777766 6788888888
Q ss_pred HHHhhccCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHhhCCC
Q 004425 656 SKRLLDLEPKDAGSFILVSNMYAG----QGMLDEAAKVRTTMNDLRL 698 (754)
Q Consensus 656 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 698 (754)
++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8888776 557788888888888 7888888888888776654
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.71 E-value=5.2e-05 Score=78.49 Aligned_cols=91 Identities=13% Similarity=0.166 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhc-----cCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCce
Q 004425 633 PLLWRTLVSVSKLMANSKFSILASKRLLD-----LEPKDA---GSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGC 704 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 704 (754)
..+++.|+.+|...|++++|+..++++++ +.|+++ ..+..|+.+|..+|++++|+.++++..+.-.+
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~----- 403 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV----- 403 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----
Confidence 44566777777778888888888887775 234444 46889999999999999999999987552111
Q ss_pred eEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 004425 705 SWIEIDSKLHHFVASGKDHPESEEIYSKLDLLNDEMK 741 (754)
Q Consensus 705 s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 741 (754)
.-...||...+++..|.+...+|+
T Consensus 404 -------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 404 -------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp -------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred -------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 112479999999999999988886
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.67 E-value=0.00056 Score=73.75 Aligned_cols=148 Identities=11% Similarity=0.008 Sum_probs=121.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCC----------HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHh
Q 004425 544 GLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGL----------SEGGICLFNEIEQIYGLRPILEHFACMVDLLG 612 (754)
Q Consensus 544 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 612 (754)
...++|++.+++++. +.|+.. .|+.--.++.+.|+ +++++++++.+.+. .+-+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 346788999999999 678765 56666666666676 99999999999873 3345567888888888
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc-------
Q 004425 613 RAG--RLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMA-NSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ------- 680 (754)
Q Consensus 613 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 680 (754)
+.| ++++|+++++++ ...| +..+|+.-..+....| ..+++.+.++++++.+|+|..+|..++.++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999987 3334 7999999999998888 899999999999999999999999999998874
Q ss_pred -------CCchHHHHHHHHHhh
Q 004425 681 -------GMLDEAAKVRTTMND 695 (754)
Q Consensus 681 -------g~~~~a~~~~~~m~~ 695 (754)
++++++.+.+++.-.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 567888888776644
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00013 Score=59.38 Aligned_cols=66 Identities=6% Similarity=-0.064 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 631 ESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
++...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356778899999999999999999999999999999999999999999999999999999987653
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.53 E-value=6.6e-05 Score=77.48 Aligned_cols=85 Identities=15% Similarity=0.194 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhc-----cCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCce
Q 004425 633 PLLWRTLVSVSKLMANSKFSILASKRLLD-----LEPKDA---GSFILVSNMYAGQGMLDEAAKVRTTMNDLRLSKEAGC 704 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 704 (754)
..+++.|..+|...|++++|+.+++++++ +.|+++ ..|..|+.+|..+|++++|+.++++..+...+
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~----- 414 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEV----- 414 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-----
Confidence 45667777778888888888888887775 344444 46889999999999999999999887552111
Q ss_pred eEEEECCEEEEEecCCCCCCChHHHHHHHHH
Q 004425 705 SWIEIDSKLHHFVASGKDHPESEEIYSKLDL 735 (754)
Q Consensus 705 s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 735 (754)
.-...||...+++..|++
T Consensus 415 -------------~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 415 -------------AHGKDHPYISEIKQEIES 432 (433)
T ss_dssp -------------HTCTTCHHHHHHHHHHHC
T ss_pred -------------HcCCCChHHHHHHHHHhc
Confidence 112469988888877653
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.51 E-value=8.2e-05 Score=63.68 Aligned_cols=101 Identities=8% Similarity=-0.117 Sum_probs=59.8
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHH
Q 004425 541 ALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSE 619 (754)
Q Consensus 541 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 619 (754)
.+.+++++|++.+++..+ +.|+ ...|..+..++...++++.+....+ .+++
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------------~~~e 64 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------MIQE 64 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------------HHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHh--------------------------HHHH
Confidence 445667777777777777 4454 3466666666666655431111110 1234
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChHHHHHHHHHhhccCCCCcch
Q 004425 620 AMNLINSS-PFSE-SPLLWRTLVSVSKLM-----------ANSKFSILASKRLLDLEPKDAGS 669 (754)
Q Consensus 620 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~ 669 (754)
|+..|++. .+.| +...|..+..+|... |++++|+..|+++++++|++...
T Consensus 65 Ai~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 65 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 44444332 2233 345555555555544 58999999999999999997543
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.47 E-value=0.00031 Score=54.43 Aligned_cols=64 Identities=23% Similarity=0.286 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 632 SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 632 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
+...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...+++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4667888999999999999999999999999999999999999999999999999999998765
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.38 E-value=0.0013 Score=55.87 Aligned_cols=112 Identities=8% Similarity=-0.128 Sum_probs=90.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhh----cCCHHH
Q 004425 544 GLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGR----AGRLSE 619 (754)
Q Consensus 544 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 619 (754)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+ . -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 56788999999998877 33333 66677777888889999999877 3 356677788888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhccCC
Q 004425 620 AMNLINSSPFSESPLLWRTLVSVSKL----MANSKFSILASKRLLDLEP 664 (754)
Q Consensus 620 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 664 (754)
|.+++++.....++..+..|...+.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999877445678888889888888 7899999999999988743
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.36 E-value=0.00028 Score=57.85 Aligned_cols=64 Identities=9% Similarity=0.027 Sum_probs=40.6
Q ss_pred cHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCC
Q 004425 602 EHFACMVDLLGRAGRLSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPK 665 (754)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 665 (754)
..+..++.+|.+.|++++|++.+++. ...| +...|..+..++...|+.++|...+++++++.|+
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 34445555555555555555555433 1223 4667777777777888888888888888887765
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.11 E-value=0.0018 Score=51.06 Aligned_cols=78 Identities=8% Similarity=0.094 Sum_probs=57.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCc
Q 004425 607 MVDLLGRAGRLSEAMNLINSS-PFSE-SPL-LWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGML 683 (754)
Q Consensus 607 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 683 (754)
.+..+.+.|++++|++.+++. ...| +.. .|..+..++...|++++|+..++++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 455666778888888777754 2234 567 88888889999999999999999999999998877632 445
Q ss_pred hHHHHHHHH
Q 004425 684 DEAAKVRTT 692 (754)
Q Consensus 684 ~~a~~~~~~ 692 (754)
.++...+++
T Consensus 78 ~~a~~~~~~ 86 (99)
T 2kc7_A 78 MDILNFYNK 86 (99)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 555555543
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.06 E-value=0.0056 Score=60.34 Aligned_cols=141 Identities=20% Similarity=0.181 Sum_probs=79.5
Q ss_pred CChhHHHHHHHHHH--HcC---ChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc
Q 004425 528 RDIVSWNAMLSAYA--LHG---LGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL 601 (754)
Q Consensus 528 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 601 (754)
.+..+|...+.+.. ..+ ...+|..+|++.++ +.|+.. .+..+..++.. ....+ |..
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~--------------~~~~~--~~~ 253 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV--------------RHSQH--PLD 253 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--------------HHHHS--CCC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--------------HhccC--CCc
Confidence 35566666665433 333 35789999999998 678754 45444444431 00011 111
Q ss_pred cHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhc
Q 004425 602 EHFACMVDLLGRAGRLSEAMNLINSSPF-SESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQ 680 (754)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 680 (754)
... . . .+.+|.+-...+.. +.++.++..+.-.+...|++++|...++++++++|+ ...|..++.++.-.
T Consensus 254 ~~~--~-~------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~ 323 (372)
T 3ly7_A 254 EKQ--L-A------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMK 323 (372)
T ss_dssp HHH--H-H------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHT
T ss_pred hhh--H-H------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHC
Confidence 000 0 0 01222322223322 235666666666666667777777777777777764 55667777777777
Q ss_pred CCchHHHHHHHHHhhC
Q 004425 681 GMLDEAAKVRTTMNDL 696 (754)
Q Consensus 681 g~~~~a~~~~~~m~~~ 696 (754)
|++++|.+.+++....
T Consensus 324 G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 324 GMNREAADAYLTAFNL 339 (372)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 7777777777665443
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.06 E-value=0.0019 Score=51.20 Aligned_cols=63 Identities=19% Similarity=0.122 Sum_probs=43.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 529 DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-DISILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 529 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
+...|..+...|...|++++|+..|++.++ ..|+ ...|..+..++...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445666777777777777777777777776 3444 34666777777777777777777777655
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.05 E-value=0.0011 Score=52.45 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=53.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhccCCCCcc-hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 639 LVSVSKLMANSKFSILASKRLLDLEPKDAG-SFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 639 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
....+...|++++|+..++++++.+|+++. .+..++.+|...|++++|...+++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 456677889999999999999999999999 9999999999999999999999988664
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.05 E-value=0.0026 Score=65.54 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=55.9
Q ss_pred HcCChHHHHHHHHHHHH---cCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhc
Q 004425 542 LHGLGKGALLLFEEMKR---EGFAPDD----ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRA 614 (754)
Q Consensus 542 ~~g~~~~A~~~~~~m~~---~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 614 (754)
..|++++|+.++++.++ .-+.|+. .+++.+..+|...|++++|..++++..+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-------------------- 369 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP-------------------- 369 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--------------------
Confidence 34566666666666553 2233443 24555555555566666665555554331
Q ss_pred CCHHHHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhc-----cCCCCcch
Q 004425 615 GRLSEAMNLINSS--PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLD-----LEPKDAGS 669 (754)
Q Consensus 615 g~~~~A~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 669 (754)
+++. +..|+ ...++.|...|...|++++|+.+++++++ +.|+++.+
T Consensus 370 ---------~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 370 ---------YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp ---------HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred ---------HHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 1111 23343 45567777777777888888888777776 35665544
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.00 E-value=0.0039 Score=52.68 Aligned_cols=65 Identities=9% Similarity=-0.096 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHhhccC-C-CCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 631 ESPLLWRTLVSVSKLMA---NSKFSILASKRLLDLE-P-KDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++..+...+..++.+.+ +.++|+.+++++++.+ | ++...++.|+-.|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 46666666666666665 5557777777777766 5 3466677777777777777777777776644
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.94 E-value=0.0045 Score=63.91 Aligned_cols=106 Identities=8% Similarity=-0.051 Sum_probs=61.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 537 LSAYALHGLGKGALLLFEEMKRE---GFAPDD----ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 537 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
+..+.+.|++++|+.++++.++. -+.|+. .+++.+..+|...|++++|..+++++.+.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i--------------- 358 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP--------------- 358 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---------------
Confidence 44455667777777777766642 123332 25566666666666666666666655431
Q ss_pred HHhhcCCHHHHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhc-----cCCCCcchHH
Q 004425 610 LLGRAGRLSEAMNLINSS--PFSES-PLLWRTLVSVSKLMANSKFSILASKRLLD-----LEPKDAGSFI 671 (754)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 671 (754)
+++. +..|+ ...++.|...+...|++++|+..++++++ +.|+++.+-.
T Consensus 359 --------------~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 359 --------------YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp --------------HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred --------------HHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 1111 23333 44566677777777777777777777765 4566655433
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.94 E-value=0.0064 Score=59.94 Aligned_cols=40 Identities=18% Similarity=-0.016 Sum_probs=35.0
Q ss_pred HhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004425 658 RLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLR 697 (754)
Q Consensus 658 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 697 (754)
..+..+|.++.+|..++..+...|++++|...++++.+..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 3456789999999999999998999999999999987765
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.80 E-value=0.00034 Score=70.08 Aligned_cols=431 Identities=10% Similarity=0.044 Sum_probs=245.9
Q ss_pred ChhhhHHHHHHHHccCChhHHHHHhccCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhcc
Q 004425 92 DTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSL 171 (754)
Q Consensus 92 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 171 (754)
.+.+|..|-.++.+.+++.+|..-|= ...|+..|..+|....+.|.+++-+..+...++..- ++..=+.|+-++++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 34567777777777777777766543 344666777788888888888887777766655432 33444567777777
Q ss_pred CCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCC------------------------CCCcch
Q 004425 172 LEDRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLA------------------------YKDVRC 227 (754)
Q Consensus 172 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~ 227 (754)
.+++.+.++++. .||..-...+-+-|...|.++.|.-+|..+. ..++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 776655443322 3444444455556666666666666665553 136779
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcC-CCChhHHHHHHHHHH
Q 004425 228 VNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGV-VREISVGNAIVTMYG 306 (754)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~ 306 (754)
|-.+-.+|+..+.+.-|.-.--.+.- .......++..|-..|.+++-..+++.-. |+ .....+|+-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHH
Confidence 99999999999998877655444332 22233456666778888888888877655 33 346677888888887
Q ss_pred hcCChHHHHHHHHccC----CC-------CchhHHHHHHHHHhcCChhHHHHHHHHhHhc-----------C---cccCh
Q 004425 307 KHGMSEEAERMFDAIS----ER-------NLISWTALISGYVRSGHGGKAINGFLEFLDL-----------G---ICCDS 361 (754)
Q Consensus 307 ~~g~~~~A~~~~~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------g---~~p~~ 361 (754)
|- +.++..+-++..- -| ....|.-++-.|++..+++.|... |.+. . -..|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~ 350 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANV 350 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCS
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchH
Confidence 75 4555555444332 22 446788888888888888877543 2221 0 11233
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHH-HHHHHHhhh
Q 004425 362 SCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFN-AILSGFMEK 440 (754)
Q Consensus 362 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~ 440 (754)
..|-..|.-|....-. .-.+++.-+ ...+.. +..++.+.+.|.+.-....+..+...|....| ++-.-|..
T Consensus 351 EiyYKAi~FYL~e~P~-lL~DLL~vL-~prlDh-----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IE- 422 (624)
T 3lvg_A 351 ELYYRAIQFYLEFKPL-LLNDLLMVL-SPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT- 422 (624)
T ss_dssp HHHHHHHHHHTTSCCT-TSHHHHHHH-CTTCCS-----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhChH-HHHHHHHhc-cccCCh-----HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhh-
Confidence 3444444444332211 001111110 011111 12345566677777777777777666555444 33445555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004425 441 IADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQ 520 (754)
Q Consensus 441 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 520 (754)
..+++. ...-+..|-+-..+..|.++ .++ .-...-..-...|.+.++|+++..
T Consensus 423 -EEDy~~-------------------LR~SId~ydNFD~i~LA~rL----EkH---eL~eFRrIAA~LYkkn~rw~qsi~ 475 (624)
T 3lvg_A 423 -EEDYQA-------------------LRTSIDAYDNFDNISLAQRL----EKH---ELIEFRRIAAYLFKGNNRWKQSVE 475 (624)
T ss_dssp -TTCCHH-------------------HHHTTSSCCCSCTTHHHHHH----HTC---SSHHHHHHHHHHHHTTCHHHHHSS
T ss_pred -hhhHHH-------------------HHHHHHHhccccHHHHHHHH----hhC---chHHHHHHHHHHHHhcccHHHHHH
Confidence 444332 22222222222333322222 111 112222333556888888888887
Q ss_pred HHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004425 521 IFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICL 587 (754)
Q Consensus 521 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 587 (754)
+.++=. .|.-.|...+..|+.+-|.++++-..+.| +...|.+.+..|-..=++|-++++
T Consensus 476 l~KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 476 LCKKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp CSSTTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 664321 12223344556788888888888887765 446677777777776666665544
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.62 E-value=0.13 Score=58.47 Aligned_cols=130 Identities=16% Similarity=0.146 Sum_probs=77.5
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChH
Q 004425 468 SRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGK 547 (754)
Q Consensus 468 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 547 (754)
..++..+.+.|..+.|.++.+.. ..-......+|++++|.++.+.+ .+...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHH
Confidence 44555556666666665544211 11134456778888888887766 34578888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004425 548 GALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 548 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (754)
.|++.|.++.+ |..+...+...|+.+...++-+.... .| .++.-..+|.+.|++++|++++.++
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 88888887654 33444444556665554444433333 11 1233344455566666666666554
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.59 E-value=0.0091 Score=47.52 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHH
Q 004425 631 ESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVS 674 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 674 (754)
+...++..|..++.+.|+++.|...++++++++|++..+...+.
T Consensus 44 ~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 35778889999999999999999999999999999987766654
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.47 E-value=0.052 Score=61.86 Aligned_cols=166 Identities=17% Similarity=0.132 Sum_probs=98.8
Q ss_pred HhCCCHHHHHH-HHhcCCCCChhhHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHH
Q 004425 407 AKGGDLKSARM-LLDGFSCKYTAEFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRS 485 (754)
Q Consensus 407 ~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 485 (754)
...+++++|.+ ++..++.. .....++..+.. .|..++|+++.+. |. .-.......|+++.|.+
T Consensus 610 ~~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~--~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEGK--DSLTKIARFLEG--QEYYEEALNISPD-------QD-----QKFELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHH--TTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCch--HHHHHHHHHHHh--CCChHHheecCCC-------cc-----hheehhhhcCCHHHHHH
Confidence 34677777776 55443311 122455555555 7777777765421 11 11233456788888877
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 004425 486 LHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDD 565 (754)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 565 (754)
+.+.+ .+...|..+.+++.+.|+++.|.+.|..+.. |..+...|...|+.+...++-+.....|-
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~~~~a~~~~~---- 738 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTLAKDAETTGK---- 738 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHHHHHHHHTTC----
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHHHHHHHHcCc----
Confidence 75432 4678899999999999999999998887654 33444445555665554444444333221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 004425 566 ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSP 628 (754)
Q Consensus 566 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 628 (754)
+.....++.+.|++++|++ +|.+.+++++|..+-++..
T Consensus 739 --~~~A~~~~~~~g~~~~a~~-----------------------~~~~~~~~~~A~~lA~~~~ 776 (814)
T 3mkq_A 739 --FNLAFNAYWIAGDIQGAKD-----------------------LLIKSQRFSEAAFLGSTYG 776 (814)
T ss_dssp --HHHHHHHHHHHTCHHHHHH-----------------------HHHHTTCHHHHHHHHHHTT
T ss_pred --hHHHHHHHHHcCCHHHHHH-----------------------HHHHcCChHHHHHHHHHhC
Confidence 1222233444455555544 4556688999999998864
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.47 E-value=0.0076 Score=56.81 Aligned_cols=71 Identities=7% Similarity=-0.036 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHh-----cCChHHHHHHHHHhhccCCCC-cchHHHHHHHHHhc-CCchHHHHHHHHHhhCCCccCCc
Q 004425 633 PLLWRTLVSVSKL-----MANSKFSILASKRLLDLEPKD-AGSFILVSNMYAGQ-GMLDEAAKVRTTMNDLRLSKEAG 703 (754)
Q Consensus 633 ~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~ 703 (754)
...|..|...|.. -|+.++|++.|+++++++|+. ..+++..++.|+.. |+.+++.+.+++.........|+
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 5567777777776 489999999999999999974 99999999999885 99999999999887766554344
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.45 E-value=0.24 Score=40.05 Aligned_cols=140 Identities=9% Similarity=0.013 Sum_probs=99.4
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHH
Q 004425 541 ALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEA 620 (754)
Q Consensus 541 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 620 (754)
.-.|..++..++..+..... +..-++-++--....-+-+-..+.++.+-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 34577888888888877632 3445555665555555655566666665332222 246666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004425 621 MNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLS 699 (754)
Q Consensus 621 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 699 (754)
...+-.++ -+......-+.....+|+.+.-..++..++.-+|-+++....++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 66665553 244455666778889999999999999977766667999999999999999999999999999999986
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.95 E-value=0.036 Score=42.79 Aligned_cols=69 Identities=12% Similarity=0.006 Sum_probs=52.8
Q ss_pred CCCccHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC
Q 004425 598 RPILEHFACMVDLLGRAGR---LSEAMNLINSS-PFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD 666 (754)
Q Consensus 598 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 666 (754)
+.+...+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|+..++++++.+|.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3455667777777755444 68888888765 3445 57788888888999999999999999999999983
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.90 E-value=0.24 Score=46.70 Aligned_cols=111 Identities=12% Similarity=0.073 Sum_probs=77.9
Q ss_pred cCCHHHHHHHHhccCCCCh--hHHHHHHH-HHHHc--CC------hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh
Q 004425 512 CGSIDGAFQIFKGISDRDI--VSWNAMLS-AYALH--GL------GKGALLLFEEMKREGFAPD---DISILGVLQACIY 577 (754)
Q Consensus 512 ~g~~~~A~~~~~~~~~~~~--~~~~~li~-~~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~ 577 (754)
.|+..+-.+.+......++ ..|..++. .+... |+ ..+|..++++.++ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 4444555556666654444 46776654 33332 32 4677888888888 6787 3578888888888
Q ss_pred -----cCCHHHHHHHHHHHHHHhCCCC--CccHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 004425 578 -----SGLSEGGICLFNEIEQIYGLRP--ILEHFACMVDLLGRA-GRLSEAMNLINSS 627 (754)
Q Consensus 578 -----~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 627 (754)
.|+.++|.++|++..+ +.| +..++..+.+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4899999999999976 455 377788888888884 8888888888765
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.79 Score=39.69 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=81.7
Q ss_pred HHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004425 507 TMYAKCGSIDGAFQIFKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGIC 586 (754)
Q Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 586 (754)
+....+|+++.|.++.+.+ .+...|..|......+|+++-|.+.|++..+ |..+.-.|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456778888888887766 4567788888888888888888888887554 4455555666677666555
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 004425 587 LFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRL 659 (754)
Q Consensus 587 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 659 (754)
+-+.... .| -++.-...+.-.|+++++.+++.+.+.-|.. .-..+.+|-.+.|.++.+++
T Consensus 82 la~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 5444433 12 1444445556678888888888776432211 11123456666666665544
No 228
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.78 E-value=2.7 Score=45.19 Aligned_cols=113 Identities=7% Similarity=-0.048 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHH
Q 004425 545 LGKGALLLFEEMKREGFAPDDISILG----VLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEA 620 (754)
Q Consensus 545 ~~~~A~~~~~~m~~~g~~p~~~t~~~----ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 620 (754)
+.+.|..+|....+.. ..+...... +.......+...++...+..... ...+.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 6677777777765432 222222222 22222233324455555555433 122222233333344466777777
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Q 004425 621 MNLINSSPFSE--SPLLWRTLVSVSKLMANSKFSILASKRLLD 661 (754)
Q Consensus 621 ~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 661 (754)
.+.|+.|+..+ .....--+..+....|+.++|...++++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777775433 222222344455667777777777777764
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.72 E-value=0.036 Score=46.74 Aligned_cols=41 Identities=15% Similarity=0.017 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHH
Q 004425 633 PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILV 673 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 673 (754)
...+-.|.-++.+.|++++|.+.++++++++|+|..+....
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 45566777788999999999999999999999976655443
No 230
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.04 Score=60.21 Aligned_cols=59 Identities=8% Similarity=-0.005 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 004425 636 WRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 636 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 694 (754)
...-...|...|+++.|+.+++++...-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 33445677788999999999999999999999999999999999999999999999885
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.34 E-value=0.0057 Score=61.52 Aligned_cols=238 Identities=13% Similarity=0.087 Sum_probs=162.4
Q ss_pred cHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc
Q 004425 193 NVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYE 272 (754)
Q Consensus 193 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 272 (754)
.+.+|+.|-.+..+.|.+.+|++-|= +..|...|..+|....+.|.+++-+..+...++.. + +...=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-k-e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-R-ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-C-STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-c-ccccHHHHHHHHHh
Confidence 45577778888888888888876653 34567778888999999999999888877665542 2 44445678888888
Q ss_pred cCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCC------------------------CCchh
Q 004425 273 NLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISE------------------------RNLIS 328 (754)
Q Consensus 273 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 328 (754)
.+++.+-++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888766544432 35666666777778888888888777776542 46788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 004425 329 WTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIYAK 408 (754)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 408 (754)
|..+-.+|...+.+.-|.-.--.++ ........++.-|-..|.+++-..+++..... -.....+++-|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHh
Confidence 9999999999998876654333322 22223344566678888888888777766521 14567788888888887
Q ss_pred CCCHHHHHHHHh----cCCCC-------ChhhHHHHHHHHhhhhcCCHHHHHH
Q 004425 409 GGDLKSARMLLD----GFSCK-------YTAEFNAILSGFMEKIADDEEDVMV 450 (754)
Q Consensus 409 ~g~~~~A~~~~~----~~~~~-------~~~~~~~li~~~~~~~~~~~~~A~~ 450 (754)
- +.++..+-++ ++--| ....|.-++--|++ ..+++.|..
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~--ydE~DnA~l 325 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK--YEEYDNAII 325 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHH--HTCHHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhc--chhHHHHHH
Confidence 5 3444444333 23222 34468888888888 888887653
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.24 E-value=0.077 Score=42.97 Aligned_cols=69 Identities=12% Similarity=-0.042 Sum_probs=29.2
Q ss_pred CCccHHHHHHHHHhhcCCHHH---HHHHHHhCCC-C-C--CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 599 PILEHFACMVDLLGRAGRLSE---AMNLINSSPF-S-E--SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 599 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~-~-p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
++..+-..++.+|.+..+..+ ++.++++.-. . | .....-.|.-++.+.|++++|.+.++.+++.+|+|.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 444444444555555444333 4444443311 1 1 112222333344444455555555555555555443
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.88 E-value=0.59 Score=38.50 Aligned_cols=66 Identities=5% Similarity=-0.072 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHhhccCCC-CcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 630 SESPLLWRTLVSVSKLMA---NSKFSILASKRLLDLEPK-DAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 630 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
.|++.+-..+..++.+.. +..+++.+++.++...|. .-...+.|+-.+.+.|++++|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455556566666665554 345677777777776664 344566677777777777777777776654
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.65 E-value=0.8 Score=39.66 Aligned_cols=100 Identities=11% Similarity=0.018 Sum_probs=49.1
Q ss_pred HHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHH
Q 004425 305 YGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLH 384 (754)
Q Consensus 305 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 384 (754)
...+|+++.|.++.+.+ .+...|..+.......|+++-|...|.+..+ +..+.--|...|+.+.-.++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34556666666665554 3445566666666666666666666655432 233333344445554444444
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhCCCHHHHHHHHhc
Q 004425 385 GFAIKHGYLSDVRLGTALVDIYAKGGDLKSARMLLDG 421 (754)
Q Consensus 385 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 421 (754)
+.....| -++.-...+.-.|+++++.++|.+
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4333333 122223333344555555555543
No 235
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.18 E-value=0.15 Score=40.26 Aligned_cols=64 Identities=17% Similarity=0.018 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhccC-------CCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 632 SPLLWRTLVSVSKLMANSKFSILASKRLLDLE-------PKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 632 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++.-...++..+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|...+++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34445567788888888888888888888753 23456899999999999999999999998765
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.95 E-value=0.51 Score=38.16 Aligned_cols=85 Identities=11% Similarity=-0.019 Sum_probs=49.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHhCCCC--CccHHHHHHHHHhhcCCHH
Q 004425 544 GLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEG---GICLFNEIEQIYGLRP--ILEHFACMVDLLGRAGRLS 618 (754)
Q Consensus 544 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 618 (754)
.....+.+-|.+....|. |+..+-..+..++.+...... ++.+++.+... -.| ..+..-.|.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHH
Confidence 344455555555555443 555565666667776665544 66777666441 113 2334446666777777777
Q ss_pred HHHHHHHhC-CCCC
Q 004425 619 EAMNLINSS-PFSE 631 (754)
Q Consensus 619 ~A~~~~~~~-~~~p 631 (754)
+|.++++.+ ..+|
T Consensus 92 ~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 92 KALKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCC
Confidence 777777655 3344
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.27 E-value=0.51 Score=39.19 Aligned_cols=54 Identities=7% Similarity=0.010 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcc
Q 004425 615 GRLSEAMNLINSS-P-FSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAG 668 (754)
Q Consensus 615 g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 668 (754)
++.++|.++|+.+ . .+.=..+|......-.++|++..|.+++.+++.+.|.+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 5555666655543 0 1111778888888888899999999999999998888543
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.79 E-value=15 Score=41.18 Aligned_cols=263 Identities=10% Similarity=-0.025 Sum_probs=133.4
Q ss_pred HHHhcCChHHHHHHHHccCCC----Cc--hhHHHHHHHHHhcCChhHHHHHHHHhHhcCc-------ccChh--hHHHHH
Q 004425 304 MYGKHGMSEEAERMFDAISER----NL--ISWTALISGYVRSGHGGKAINGFLEFLDLGI-------CCDSS--CLATVI 368 (754)
Q Consensus 304 ~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~~--~~~~ll 368 (754)
+....|+.++++.+++..... +. ..-..+.-+....|..+++..++...+...- .+... ....|-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 355678888888888776541 21 2223344456667776778877777654321 01111 111222
Q ss_pred HHhcccCChHHHHHHHHHHHHhCCCcchh--HHHHHHHHHHhCCCHHHHHHHHhcCC-CCChhh--HHHHHHHHhhhhcC
Q 004425 369 DGCSVCSNLELGLQLHGFAIKHGYLSDVR--LGTALVDIYAKGGDLKSARMLLDGFS-CKYTAE--FNAILSGFMEKIAD 443 (754)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~--~~~li~~~~~~~~~ 443 (754)
.++...++ +.+.+.+..++...- .... ..-+|...|.-.|+.+....++..+. ..+... .-++.-|+.. .|
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~--~g 538 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALIN--YG 538 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--TT
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhh--CC
Confidence 22333444 344444444444221 1111 11223333445666666666665443 122222 2223334555 78
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004425 444 DEEDVMVLFSQQRLAGMEPDPVTFS---RLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQ 520 (754)
Q Consensus 444 ~~~~A~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 520 (754)
+.+.+..+.+.+... ..|.. -|. .+.-+|+..|+.....+++..+.... ..++.-...+.-++...|+.+.+.+
T Consensus 539 ~~e~~~~li~~L~~~-~dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 539 RQELADDLITKMLAS-DESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp CGGGGHHHHHHHHHC-SCHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred ChHHHHHHHHHHHhC-CCHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 888888888877763 12222 222 33446778888888887888887642 2223222222233444677666777
Q ss_pred HHhccCC-CChhHHH--HHHHHHHHcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004425 521 IFKGISD-RDIVSWN--AMLSAYALHGLG-KGALLLFEEMKREGFAPDDISILGVLQACI 576 (754)
Q Consensus 521 ~~~~~~~-~~~~~~~--~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 576 (754)
+++.+.+ .|...-. .+.-+....|.. .+++.++..+.. .+|..+-...+.++.
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 7765542 3443332 233344444443 678888888874 345544333333333
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.42 E-value=0.61 Score=37.90 Aligned_cols=65 Identities=5% Similarity=-0.081 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHhhccCCC-CcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 631 ESPLLWRTLVSVSKLMA---NSKFSILASKRLLDLEPK-DAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 631 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
|++.+-..+..++.+.. +..+|+.+++.++..+|. .-..+..|+-.+.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44555555555554443 334566666666666653 344566666666666777776666665543
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.06 E-value=8.8 Score=36.86 Aligned_cols=169 Identities=13% Similarity=0.093 Sum_probs=103.6
Q ss_pred HHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHH----HHHhHHCCCCCCcchHHHHHHHH
Q 004425 195 FVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHV----FVHLLSSDFEPNDYTFTNVISVC 270 (754)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~ 270 (754)
..|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+.+.+.++++|......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3566777888899999999988642 23455667777665554 55566678888888888888777
Q ss_pred hccCCc-hHHHHHHHHHHH----hcC--CCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhc---C
Q 004425 271 YENLGV-EEGKQLHGLAVK----FGV--VREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRS---G 340 (754)
Q Consensus 271 ~~~~~~-~~a~~~~~~~~~----~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g 340 (754)
.....- ..-.++++.+++ .|- .-|+.....+...|.+.|++.+|+..|-.-...|...+..++.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 653321 123444555544 332 237788889999999999999999887633222444555444443333 4
Q ss_pred ChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHH
Q 004425 341 HGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIK 389 (754)
Q Consensus 341 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 389 (754)
...++-- ..-..+ --|...+++..|..+++...+
T Consensus 183 ~~~e~dl--------------f~~RaV-L~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAE--------------FFSRLV-FNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHH--------------HHHHHH-HHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHH--------------HHHHHH-HHHHHhcCHHHHHHHHHHHHH
Confidence 3333211 111112 224456778888777776554
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.50 E-value=1.5 Score=37.22 Aligned_cols=112 Identities=7% Similarity=-0.048 Sum_probs=53.9
Q ss_pred HHHHHhcCCHHHHHHHHhccC-----CCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHH-HHHHH
Q 004425 506 ITMYAKCGSIDGAFQIFKGIS-----DRDI-------VSWNAMLSAYALHGLGKGALLLFEEMKREG-FAPDDI-SILGV 571 (754)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-t~~~l 571 (754)
+..+...|.++.|+-+.+.+. .+++ .+...+.+++...|++.+|...|++.++.. .-+... +...+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 455566666776666665542 2332 133445566666666666666666654311 111111 10000
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 004425 572 LQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSEAMNLINSSPFSE 631 (754)
Q Consensus 572 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 631 (754)
. ....... . ....++.+.---+..+|.+.|++++|+..++.+|.+-
T Consensus 107 ~----~~ss~p~---------s-~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 107 G----NSASTPQ---------S-QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred c----ccCCCcc---------c-ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 0 0000000 0 1122233444457778888888888888888876543
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.43 E-value=17 Score=37.20 Aligned_cols=50 Identities=10% Similarity=-0.026 Sum_probs=33.0
Q ss_pred CChhHHHHHHHHHHhC-----CCCCChhhHHHHHHHhccCCChHHHHHHHHHHHH
Q 004425 138 GDYESVLGIACDMYRS-----EEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIK 187 (754)
Q Consensus 138 ~~~~~a~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 187 (754)
|+++.|++.+-.+.+. ...-.......+++.|...++++.....+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6788888877665432 2333455677778888888888877666665544
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.34 E-value=0.51 Score=39.23 Aligned_cols=108 Identities=10% Similarity=-0.020 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 004425 564 DDISILGVLQACIYSGLS------EGGICLFNEIEQIYGLRPILE-HFACMVDLLGRAGRLSEAMNLINSSPFSESPLLW 636 (754)
Q Consensus 564 ~~~t~~~ll~a~~~~g~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 636 (754)
|..+|...+....+.|+. ++.+++|++... .++|+.. .+...+. .|
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~-------------------------LW 64 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFAR-------------------------IQ 64 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHH-------------------------HH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHH-------------------------HH
Confidence 445777777777777777 677777777666 4555421 1111111 12
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004425 637 RTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLS 699 (754)
Q Consensus 637 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 699 (754)
--++.. ...+|.++|..+|+.++++...-+..|...+..-.++|+...|.+++.+....+.+
T Consensus 65 IrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 65 VRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 111111 23379999999999999886666778888888899999999999999988776654
No 244
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.19 E-value=6.6 Score=31.96 Aligned_cols=137 Identities=9% Similarity=-0.033 Sum_probs=76.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004425 442 ADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
.|..++..++..+.... .+..-|+-++--....-+-+...+.++.+-+. .|. .+||++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 67777777777776653 23344444544444444444444444443221 111 233343333333
Q ss_pred HhccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 004425 522 FKGISDRDIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGL 597 (754)
Q Consensus 522 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 597 (754)
+-.+.. +....+.-++.+...|+-++-.+++.++.. +.+|+...+..+..||.+.|+..+|.+++.++.+ .|+
T Consensus 84 ~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~-kG~ 156 (172)
T 1wy6_A 84 GVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK-KGE 156 (172)
T ss_dssp HHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTC
T ss_pred HHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH-hhh
Confidence 333322 222344455666777777777777777533 2556677777777788888888888877777776 355
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.79 E-value=15 Score=35.36 Aligned_cols=109 Identities=12% Similarity=0.045 Sum_probs=69.2
Q ss_pred HHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHH----HHHhHhcCcccChhhHHHHHHHhcccCC
Q 004425 301 IVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAING----FLEFLDLGICCDSSCLATVIDGCSVCSN 376 (754)
Q Consensus 301 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 376 (754)
+..=|.+.+++++|.+++..- ...+.+.|+...|.++ .+-..+.+++++......++..+.....
T Consensus 39 l~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~ 107 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDP 107 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 334477788888888876432 3345666776665554 4444556788888877777776655322
Q ss_pred hH-HHHHHHHHHHH----hC--CCcchhHHHHHHHHHHhCCCHHHHHHHHh
Q 004425 377 LE-LGLQLHGFAIK----HG--YLSDVRLGTALVDIYAKGGDLKSARMLLD 420 (754)
Q Consensus 377 ~~-~a~~~~~~~~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 420 (754)
-+ .=.++.+.+++ .| ..-|+.....+...|.+.|++.+|+.-|-
T Consensus 108 ~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 108 SEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 11 12345555554 22 22467788888888999999999888765
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.29 E-value=2.6 Score=35.85 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=60.0
Q ss_pred CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc-------cHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 004425 560 GFAPDDI--SILGVLQACIYSGLSEGGICLFNEIEQIYGLRPIL-------EHFACMVDLLGRAGRLSEAMNLINSS--- 627 (754)
Q Consensus 560 g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~--- 627 (754)
|+.|... ++..-+..+...|.++.|+-+.+.+....+..|++ .++..+++++...|++.+|...|++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4445433 44455566667777777777666655433333442 24556677777777777777776542
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 628 ----PFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 628 ----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
+..+.. ..++. .... ...-..+ +.+.+.-+.++.+|.+.|++++|+.+++..
T Consensus 93 ~k~l~k~~s~--~~~~~----~~ss-------~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKV--RPSTG----NSAS-------TPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCc--ccccc----ccCC-------Ccccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 111111 00000 0000 0000111 233456677888888888888888888765
No 247
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.84 E-value=34 Score=38.38 Aligned_cols=250 Identities=9% Similarity=-0.089 Sum_probs=129.3
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCC----Chh-hHHH-HHHHHhhhhcCCHHHHHHHHHHHHHcCC--C-----CCHHHHHH
Q 004425 403 VDIYAKGGDLKSARMLLDGFSCK----YTA-EFNA-ILSGFMEKIADDEEDVMVLFSQQRLAGM--E-----PDPVTFSR 469 (754)
Q Consensus 403 i~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~-li~~~~~~~~~~~~~A~~~~~~m~~~g~--~-----p~~~~~~~ 469 (754)
--+....|+.+++..+++..... +.. -..+ +.-|.+. .|..++++.++.......- . +....-..
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~--ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAa 458 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIY--AGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGAS 458 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHT--TTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHcCccccccccccHHHHHHHH
Confidence 34456788888899998877642 222 1222 2335556 6665678887777665321 0 11111222
Q ss_pred HHHHHhcccc-hHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhccCC-CChhHH--HHHHHHHHHc
Q 004425 470 LLSLSASQAC-LVRGRSLHAYSIKTGYAADV--IVGNALITMYAKCGSIDGAFQIFKGISD-RDIVSW--NAMLSAYALH 543 (754)
Q Consensus 470 ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~--~~li~~~~~~ 543 (754)
+--+.+-.|. -+++...+..+....- ... ...-+|...|.-.|+-+....++..+.+ .+.... -.+.-++...
T Consensus 459 LGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 459 LGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhC
Confidence 2223333332 2344455555444221 111 1112233344556777776776665432 222222 2333445577
Q ss_pred CChHHHHHHHHHHHHcCCCCCH-HHHH---HHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcCCHHH
Q 004425 544 GLGKGALLLFEEMKREGFAPDD-ISIL---GVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAGRLSE 619 (754)
Q Consensus 544 g~~~~A~~~~~~m~~~g~~p~~-~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 619 (754)
|+.+.+..+++.+... .|. .-|. .+.-+|+..|+.....+++..+..+ ...++.....+.-++.-.|+.+.
T Consensus 538 g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 538 GRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp TCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSS
T ss_pred CChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHH
Confidence 8888888888888762 233 2333 3444677888987777788888762 22233333333334444666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh--cCCh-HHHHHHHHHhh
Q 004425 620 AMNLINSSPFSESPLLWRTLVSVSKL--MANS-KFSILASKRLL 660 (754)
Q Consensus 620 A~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~-~~a~~~~~~~~ 660 (754)
+.++++.+....|+.+-....-+... .|+. .++...+.++.
T Consensus 613 v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 613 VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 66666644333455554443333322 3332 55666666665
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.18 E-value=1 Score=45.48 Aligned_cols=60 Identities=8% Similarity=-0.030 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 636 WRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 636 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
...++.++...|+.+++...+++++..+|-+...|..|..+|.+.|+..+|.+.|+..+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445667778889999999999999999999999999999999999999999999888753
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.24 E-value=22 Score=34.36 Aligned_cols=168 Identities=11% Similarity=0.073 Sum_probs=101.7
Q ss_pred HHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHH----HHhHHCCCCCCcchHHHHHHHHh
Q 004425 196 VGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVF----VHLLSSDFEPNDYTFTNVISVCY 271 (754)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 271 (754)
+|.++..-|.+.+++++|++++-. -...+.+.|+...|.++- +-+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 556677778899999999987632 234566677766555544 55566788888888888888776
Q ss_pred ccCCch-HHHHHHHHHHH----hc--CCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhH
Q 004425 272 ENLGVE-EGKQLHGLAVK----FG--VVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGK 344 (754)
Q Consensus 272 ~~~~~~-~a~~~~~~~~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 344 (754)
....-+ .-..+.+.+++ .| -.-|......+...|.+.+++.+|+.-|-.-.++....+..++.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 655322 22334444443 34 233677888889999999999999988843222223555444444433332222
Q ss_pred HHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHH
Q 004425 345 AINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIK 389 (754)
Q Consensus 345 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 389 (754)
+ |.+.-..+ --|...+++..|..+++...+
T Consensus 186 ~--------------dlfiaRaV-L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 A--------------PLYCARAV-LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H--------------HHHHHHHH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHH-HHHHHhCCHHHHHHHHHHHHH
Confidence 2 11122222 234556677777777665554
No 250
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=87.13 E-value=36 Score=36.65 Aligned_cols=18 Identities=6% Similarity=-0.091 Sum_probs=15.5
Q ss_pred HHhcCCchHHHHHHHHHh
Q 004425 677 YAGQGMLDEAAKVRTTMN 694 (754)
Q Consensus 677 ~~~~g~~~~a~~~~~~m~ 694 (754)
+.+.|+|++|.+.++++.
T Consensus 548 ~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHHTTCHHHHHHHHHHTS
T ss_pred HHHcCCHHHHHHHHHhCC
Confidence 488999999999998764
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.10 E-value=22 Score=35.47 Aligned_cols=128 Identities=13% Similarity=0.010 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcC-CHHHHHHHHhccCC---CChhHH----
Q 004425 466 TFSRLLSLSASQACLVRGRSLHAYSIKT-GYAA---DVIVGNALITMYAKCG-SIDGAFQIFKGISD---RDIVSW---- 533 (754)
Q Consensus 466 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~---- 533 (754)
....+...|.+.|+.++..+++...... +.-+ .......+++.+.... ..+.-.++..+..+ .+-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666555554321 0011 2233445555554432 22222222222211 111122
Q ss_pred --HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004425 534 --NAMLSAYALHGLGKGALLLFEEMKREGFAPDDI-----SILGVLQACIYSGLSEGGICLFNEIEQ 593 (754)
Q Consensus 534 --~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~a~~~~g~~~~a~~~~~~~~~ 593 (754)
.-++..|...|++.+|.+++.++.+.=-+.|.. .+..-+..|...+++.++...+.....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 135556666666666666666665421111211 233334455566666666666655543
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.62 E-value=34 Score=34.97 Aligned_cols=186 Identities=12% Similarity=0.079 Sum_probs=114.1
Q ss_pred cCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHh-CCCCchh--HHHHHHHHHHhcC
Q 004425 442 ADDEEDVMVLFSQQRLA-----GMEPDPVTFSRLLSLSASQACLVRGRSLHAYSIKT-GYAADVI--VGNALITMYAKCG 513 (754)
Q Consensus 442 ~~~~~~A~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~li~~~~~~g 513 (754)
.+++++|++.+..+.+. ...........++..|...++++...+.+..+.+. |...... ..+.++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 35566676666555432 23334456677778888888888777766665543 3222211 1122233333333
Q ss_pred C--HHHHHHHHhccCC---C-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHH
Q 004425 514 S--IDGAFQIFKGISD---R-------DIVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPD-D----ISILGVLQACI 576 (754)
Q Consensus 514 ~--~~~A~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~ 576 (754)
. .+.-..+.+.... . .......|...|...|++.+|..+++++...-...+ . ..+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2 2223334443321 1 112345678889999999999999999874322222 2 25666777899
Q ss_pred hcCCHHHHHHHHHHHHHH-hCCCCC----ccHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004425 577 YSGLSEGGICLFNEIEQI-YGLRPI----LEHFACMVDLLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 577 ~~g~~~~a~~~~~~~~~~-~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (754)
..+++.+|..+++++... ....+. ...+.+++..+...+++.+|-..|.++
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999987532 222222 246779999999999999998877654
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.56 E-value=27 Score=33.75 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=84.2
Q ss_pred hhHHHHHHHHccCChhHHHHHhccCCCCChhhHHHHHHHHhcCCChhHHHHHH----HHHHhCCCCCChhhHHHHHHHhc
Q 004425 95 EANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIA----CDMYRSEEKFNEHTCSVILEACS 170 (754)
Q Consensus 95 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 170 (754)
.|.++..-|.+.+++++|.+++-. -...+.+.|....|-++- +...+.++++|..+...|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456677778899999999997643 234556667776665544 55667888999888888887777
Q ss_pred cCCCh-----HHHHHHHHHHHHHC--CCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcC
Q 004425 171 LLEDR-----IFGEQIHAFAIKSG--FENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAG 239 (754)
Q Consensus 171 ~~~~~-----~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 239 (754)
....- ....+...+-.+.| -.-|+.....+-..|.+.+++.+|+.-|=.-.......|..++-.+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 55432 12223333333444 23467777788888888888888888774212112245544444444443
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.06 E-value=5.2 Score=40.31 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----HhCCCCCccHHH
Q 004425 534 NAMLSAYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQ----IYGLRPILEHFA 605 (754)
Q Consensus 534 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~ 605 (754)
..++..+...|++++|+..++.+.. ..| +...+..++.++.+.|+..+|.+.|+.+.. ++|+.|+..+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3456777788888888888888876 445 566888888888888888888888887544 458888765543
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.01 E-value=15 Score=30.32 Aligned_cols=39 Identities=10% Similarity=-0.065 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHH
Q 004425 634 LLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFIL 672 (754)
Q Consensus 634 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 672 (754)
...--|.-++.+.|++++|.+..+.+++.+|+|..+..+
T Consensus 78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 344456678889999999999999999999997655443
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.00 E-value=5.6 Score=30.33 Aligned_cols=63 Identities=13% Similarity=-0.000 Sum_probs=48.0
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHH
Q 004425 139 DYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLIS 202 (754)
Q Consensus 139 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 202 (754)
+.-+..+-++.+....+.|++....+.|++|.+.+|+..|.++++-++..- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 455677778888888889999999999999999999999999888876543 233446666554
No 257
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.80 E-value=16 Score=39.97 Aligned_cols=51 Identities=18% Similarity=0.034 Sum_probs=40.0
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004425 539 AYALHGLGKGALLLFEEMKREGFAPDD-ISILGVLQACIYSGLSEGGICLFNEI 591 (754)
Q Consensus 539 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 591 (754)
-+...|+++-|+++-++... ..|+. .||..|..+|...|+++.|+-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 35567888888888888877 66765 48888888888888888888777765
No 258
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.09 E-value=3.2 Score=33.68 Aligned_cols=39 Identities=8% Similarity=-0.106 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHH
Q 004425 633 PLLWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFI 671 (754)
Q Consensus 633 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 671 (754)
...+--|.-++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 344555666777888888888888888888888765443
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.23 E-value=11 Score=28.69 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 546 GKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 546 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
.-+..+-++.+....+-|+.....+.|.||.+.+++.-|.++|+.++.+.|-. ..+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 44556666777777889999999999999999999999999999998854433 445665554
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.46 E-value=16 Score=27.75 Aligned_cols=78 Identities=14% Similarity=-0.022 Sum_probs=55.4
Q ss_pred ChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHH
Q 004425 174 DRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLS 253 (754)
Q Consensus 174 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 253 (754)
.-++|..+-+.+...|- ...+--.-+..+...|++++|..+.+.+.-||...|-++-. .+.|-.+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666666665553 33344444566778899999999999999999999887755 367777777777777776
Q ss_pred CC
Q 004425 254 SD 255 (754)
Q Consensus 254 ~g 255 (754)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.20 E-value=16 Score=27.70 Aligned_cols=78 Identities=17% Similarity=0.023 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHH
Q 004425 174 DRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLS 253 (754)
Q Consensus 174 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 253 (754)
.-++|..+-+.+...|- ...+--.-+..+...|++++|..+.+.+.-||...|-++-.. +.|-.+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45566666666665553 333444445667788999999999999999999998877554 56666777776667766
Q ss_pred CC
Q 004425 254 SD 255 (754)
Q Consensus 254 ~g 255 (754)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 262
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=80.03 E-value=19 Score=33.85 Aligned_cols=49 Identities=8% Similarity=0.096 Sum_probs=26.1
Q ss_pred hccCCchHHHHHHHHHHHhcCCCChhH--HHHHHHHHHhcCChHHHHHHHH
Q 004425 271 YENLGVEEGKQLHGLAVKFGVVREISV--GNAIVTMYGKHGMSEEAERMFD 319 (754)
Q Consensus 271 ~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 319 (754)
+..++.....++.+.+.+.|..++... ..+.+...++.|+.+-+..+++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 344555555566666677666554321 2233444555666666655555
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.94 E-value=15 Score=27.96 Aligned_cols=78 Identities=18% Similarity=0.082 Sum_probs=53.7
Q ss_pred CchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 004425 275 GVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLD 354 (754)
Q Consensus 275 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (754)
..++|..|-+.+...|. ...+--.-+..+...|++++|..+.+...-||...|-++-.. +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 44666666666655543 222222333456788999999999999999999999887654 56777777777767666
Q ss_pred cC
Q 004425 355 LG 356 (754)
Q Consensus 355 ~g 356 (754)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 264
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=79.10 E-value=33 Score=32.08 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhCCCc
Q 004425 380 GLQLHGFAIKHGYLS 394 (754)
Q Consensus 380 a~~~~~~~~~~g~~~ 394 (754)
..++.+.+.+.|..+
T Consensus 198 ~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 198 VEAITHLLLDHGADV 212 (285)
T ss_dssp HHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHcCCCC
Confidence 344455555555443
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.28 E-value=14 Score=28.01 Aligned_cols=78 Identities=15% Similarity=0.099 Sum_probs=54.2
Q ss_pred CchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 004425 275 GVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLD 354 (754)
Q Consensus 275 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (754)
..++|..|-+.+...|. ...+--.-+..+...|++++|..+.+...-||...|-++-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34566666666655543 22222233345678899999999999999999999988765 467777888877777776
Q ss_pred cC
Q 004425 355 LG 356 (754)
Q Consensus 355 ~g 356 (754)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 266
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.22 E-value=18 Score=42.46 Aligned_cols=164 Identities=9% Similarity=-0.035 Sum_probs=96.7
Q ss_pred hHHHHHHHHccCChhHHHHHhccCCCCChhhHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCCh
Q 004425 96 ANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDR 175 (754)
Q Consensus 96 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 175 (754)
...++..+.+.+..+.|.++....+. +...--.+..++...|++++|.++|++.- .|+..+..... ..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~----------~~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA----------VL 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCS----------SH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhh----------hh
Confidence 34566667778888888877665544 44444456677888999999999998752 22322211100 00
Q ss_pred HHHHHHHHHHHHHC--CCCcHHHHHHHHHHhHhcCCHhHHHHHhc----cCCCCCc----chHHHHHHHHHHcCChhHHH
Q 004425 176 IFGEQIHAFAIKSG--FENNVFVGTSLISMYFHSGCFREAENVFR----GLAYKDV----RCVNFMILEYNKAGESEMAF 245 (754)
Q Consensus 176 ~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~~~~~~~----~~~~~li~~~~~~g~~~~A~ 245 (754)
.. +..+.... ...-..-|..++..+.+.|.++.+.++-. .....+. ..|..+.+++...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 01111110 11123446777777777777766665543 2222221 25888889999999999999
Q ss_pred HHHHHhHHCCCCCCcchHHHHHHHHhccCCch
Q 004425 246 HVFVHLLSSDFEPNDYTFTNVISVCYENLGVE 277 (754)
Q Consensus 246 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 277 (754)
..+-.+.....+ ...+..++..+|..+..+
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHH
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChh
Confidence 888887765433 345566666666666544
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.25 E-value=4.2 Score=37.76 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=44.2
Q ss_pred HHHhhcCCHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCC
Q 004425 609 DLLGRAGRLSEAMNLIN-SSPFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDLEPKD 666 (754)
Q Consensus 609 ~~~~~~g~~~~A~~~~~-~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 666 (754)
..+.+.|.+++|++.+. .+...| |...-..|...++..|++++|..-++.+.+++|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 34567888888887765 343445 67777788888888888888888888888888883
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.28 E-value=18 Score=33.55 Aligned_cols=118 Identities=14% Similarity=0.055 Sum_probs=66.7
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHhh
Q 004425 539 AYALHGLGKGALLLFEEMKREGFAP-DDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILE----HFACMVDLLGR 613 (754)
Q Consensus 539 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~ 613 (754)
...+.|+.++|++....-++. .| |...-..++.-+|-.|++++|.+-++...+ +.|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH---
Confidence 345667778887777777763 35 444555667777778888888877777654 334322 22222221
Q ss_pred cCCHHHHH-HHHHh--CCCC-CCHHHHH-HHHHHHH--hcCChHHHHHHHHHhhccCCCCcc
Q 004425 614 AGRLSEAM-NLINS--SPFS-ESPLLWR-TLVSVSK--LMANSKFSILASKRLLDLEPKDAG 668 (754)
Q Consensus 614 ~g~~~~A~-~~~~~--~~~~-p~~~~~~-~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~ 668 (754)
+..+ ++|.. .|.- ..+..|. .++.+.. ..|+.+.|..+-.++++..|..+.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 2222 23321 1111 1233343 3444443 448888888888888888777554
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.23 E-value=14 Score=29.93 Aligned_cols=63 Identities=13% Similarity=-0.000 Sum_probs=48.3
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHhccCCChHHHHHHHHHHHHHCCCCcHHHHHHHHH
Q 004425 139 DYESVLGIACDMYRSEEKFNEHTCSVILEACSLLEDRIFGEQIHAFAIKSGFENNVFVGTSLIS 202 (754)
Q Consensus 139 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 202 (754)
+.-+..+-++.+....+.|++....+.|++|.+.+|+..|.++++-++..- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 445667777888888899999999999999999999999999988876543 333556666654
No 270
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.85 E-value=27 Score=40.94 Aligned_cols=21 Identities=10% Similarity=-0.024 Sum_probs=10.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 004425 571 VLQACIYSGLSEGGICLFNEI 591 (754)
Q Consensus 571 ll~a~~~~g~~~~a~~~~~~~ 591 (754)
+..++...|++++|..+|.+.
T Consensus 848 ~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 848 KALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 334445555555555555443
No 271
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=71.38 E-value=96 Score=33.37 Aligned_cols=20 Identities=5% Similarity=-0.054 Sum_probs=14.7
Q ss_pred hhcCCHHHHHHHHHhCCCCC
Q 004425 612 GRAGRLSEAMNLINSSPFSE 631 (754)
Q Consensus 612 ~~~g~~~~A~~~~~~~~~~p 631 (754)
...|++++|++.++++++-|
T Consensus 549 ~~~g~~~~AL~~i~~L~llP 568 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLP 568 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSC
T ss_pred HHcCCHHHHHHHHHhCCCCC
Confidence 56788888888887775555
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=70.91 E-value=24 Score=28.66 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 004425 548 GALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVD 609 (754)
Q Consensus 548 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 609 (754)
+..+-++.+....+-|+.......|.+|.+.+++.-|..+|+.++.+.| +....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4455566666777899999999999999999999999999999988543 33555665554
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.13 E-value=34 Score=34.82 Aligned_cols=94 Identities=12% Similarity=-0.090 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHH---cCCCCCHHHH--H
Q 004425 501 VGNALITMYAKCGSIDGAFQIFKGISD------RDIVSWNAMLSAYALHGLGKGALLLFEEMKR---EGFAPDDISI--L 569 (754)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~--~ 569 (754)
+...+.+.|.++|+++.|.+.|.++.. .-+..+-..|..+...+++..+...+++... .+-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456788888889999888888888753 2234566677888888888888888887653 2323332211 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Q 004425 570 GVLQACIYSGLSEGGICLFNEIEQI 594 (754)
Q Consensus 570 ~ll~a~~~~g~~~~a~~~~~~~~~~ 594 (754)
.-...+...+++.+|...|-.....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122234567888888777776653
No 274
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=65.74 E-value=38 Score=31.97 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=6.0
Q ss_pred HccCChhHHHHHhc
Q 004425 104 AKFNRLDVAQKLFD 117 (754)
Q Consensus 104 ~~~~~~~~A~~~~~ 117 (754)
+..|+.+-+..+++
T Consensus 39 ~~~g~~~~v~~Ll~ 52 (285)
T 3kea_A 39 IADNNVRLVCTLLN 52 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 33444444444443
No 275
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=63.11 E-value=58 Score=29.38 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=12.5
Q ss_pred HHhcCCChhHHHHHHHHHHhCCCCCC
Q 004425 133 GYLDDGDYESVLGIACDMYRSEEKFN 158 (754)
Q Consensus 133 ~~~~~~~~~~a~~~~~~m~~~g~~p~ 158 (754)
..++.|+.+.+..+++.+.+.|..++
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 33445555555555554444444433
No 276
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=60.35 E-value=90 Score=27.49 Aligned_cols=49 Identities=10% Similarity=0.066 Sum_probs=23.8
Q ss_pred CChhhhHHHHHHHHccCChhHHHHHhccCCCCChhhHHHHHHHHhcCCC
Q 004425 91 NDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGD 139 (754)
Q Consensus 91 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 139 (754)
++..+-...+..+++.|..+....+.+.+..++...-...+.++.+.+.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 4445555555555555554444444444444454444444444444443
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=60.06 E-value=91 Score=27.45 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=20.6
Q ss_pred CcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCC
Q 004425 192 NNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGE 240 (754)
Q Consensus 192 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 240 (754)
++..+....+..+.+.|..+....+.+.+..+|...-...+.++.+.++
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 3444444444444444443333333333333444333344444444443
No 278
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=60.03 E-value=1.5e+02 Score=29.86 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=10.9
Q ss_pred HHHHHhcCChHHHHHHHHc
Q 004425 302 VTMYGKHGMSEEAERMFDA 320 (754)
Q Consensus 302 i~~~~~~g~~~~A~~~~~~ 320 (754)
+...+..|+.+-+..+++.
T Consensus 216 L~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 216 LHIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3444556666666666654
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.17 E-value=35 Score=34.75 Aligned_cols=60 Identities=3% Similarity=-0.097 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC--CccHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004425 567 SILGVLQACIYSGLSEGGICLFNEIEQIYGLRP--ILEHFACMVDLLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 567 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (754)
+...+..-+.+.|++++|.+.|.++... ...+ -++.+...+.++...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4556666677777777777777776652 2222 2345556666666666666666666543
No 280
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=58.43 E-value=42 Score=30.35 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=9.8
Q ss_pred HHHHHccCChhHHHHHhc
Q 004425 100 INLYAKFNRLDVAQKLFD 117 (754)
Q Consensus 100 i~~~~~~~~~~~A~~~~~ 117 (754)
+...++.|+.+.+..+++
T Consensus 13 L~~A~~~g~~~~v~~Ll~ 30 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVN 30 (241)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 444455566665555554
No 281
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=57.46 E-value=68 Score=27.85 Aligned_cols=110 Identities=5% Similarity=-0.071 Sum_probs=47.3
Q ss_pred hHhcCCHhHHHHHhccCC----CCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcch--HHHHHHHHhccCCch
Q 004425 204 YFHSGCFREAENVFRGLA----YKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYT--FTNVISVCYENLGVE 277 (754)
Q Consensus 204 ~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~ 277 (754)
.+..|+.+....++..-. ..|..-++.+.. .+..|+. ++++.+.+.|..++... -.+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDI----EIAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 345677777777766443 123333333333 3344553 34444445565554332 112233334455554
Q ss_pred HHHHHHHHHHHhcCCCChh--HHHHHHHHHHhcCChHHHHHHHHcc
Q 004425 278 EGKQLHGLAVKFGVVREIS--VGNAIVTMYGKHGMSEEAERMFDAI 321 (754)
Q Consensus 278 ~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~ 321 (754)
-+..+++. .+..++.. .-.+.+...++.|+.+-+..+++.-
T Consensus 87 ~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 129 (201)
T 3hra_A 87 ILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129 (201)
T ss_dssp HHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 44333321 22121111 0112233445556666655555543
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.91 E-value=92 Score=27.41 Aligned_cols=47 Identities=15% Similarity=-0.010 Sum_probs=27.8
Q ss_pred CChHHHHHHHHHhhc--cCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004425 647 ANSKFSILASKRLLD--LEPKDAGSFILVSNMYAGQGMLDEAAKVRTTM 693 (754)
Q Consensus 647 g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 693 (754)
++...+..+|+.+.. +.-..+..|...+..+...|++.+|.++++.=
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 335556666665554 33345556666666666666666666666643
No 283
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=56.52 E-value=42 Score=31.71 Aligned_cols=17 Identities=12% Similarity=0.046 Sum_probs=9.7
Q ss_pred HHHHHhHhcCcccChhh
Q 004425 347 NGFLEFLDLGICCDSSC 363 (754)
Q Consensus 347 ~~~~~m~~~g~~p~~~~ 363 (754)
++.+.+.+.|..++...
T Consensus 209 ~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 209 EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHTTSCBCSTTTT
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 34455556676666554
No 284
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=55.30 E-value=1.7e+02 Score=29.27 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=9.8
Q ss_pred HHHHhcCChHHHHHHHHc
Q 004425 303 TMYGKHGMSEEAERMFDA 320 (754)
Q Consensus 303 ~~~~~~g~~~~A~~~~~~ 320 (754)
...++.|+.+-+..+++.
T Consensus 118 ~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 118 HIAAREGHVETVLALLEK 135 (437)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhC
Confidence 344455666655555554
No 285
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=53.28 E-value=44 Score=30.79 Aligned_cols=53 Identities=8% Similarity=0.068 Sum_probs=27.3
Q ss_pred HHhcCCChhHHHHHHHHHHhCCCCCChhh-------HHHHHHHhc--cCCChHHHHHHHHHH
Q 004425 133 GYLDDGDYESVLGIACDMYRSEEKFNEHT-------CSVILEACS--LLEDRIFGEQIHAFA 185 (754)
Q Consensus 133 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~m 185 (754)
..++.|+.+....+++.+.+.|..++... .+.|..++. +.|+.+.++.+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34455666666666666665555554322 233333321 456666555555443
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=50.84 E-value=66 Score=28.87 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCCChh--hhHHHHHHHHccCChhHHHHHhccC
Q 004425 79 AVHAFLLKSGSQNDTF--EANNLINLYAKFNRLDVAQKLFDGM 119 (754)
Q Consensus 79 ~~~~~~~~~g~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~~ 119 (754)
.+.+.+.+.|..++.. .....+...++.|+.+-+..+++.-
T Consensus 23 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 23 ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 3444455555444322 1223455555666666665555543
No 287
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=49.96 E-value=38 Score=31.26 Aligned_cols=92 Identities=12% Similarity=0.028 Sum_probs=49.8
Q ss_pred HHHHHHcCChhHHHHHHHHhHHCCCCCCcch-------HHHHHHHHh--ccCCchHHHHHHHHHHHhcC---------CC
Q 004425 232 ILEYNKAGESEMAFHVFVHLLSSDFEPNDYT-------FTNVISVCY--ENLGVEEGKQLHGLAVKFGV---------VR 293 (754)
Q Consensus 232 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~ 293 (754)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+. ..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3445667777777777777776665555332 234444432 56777777666665433111 10
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHccCC
Q 004425 294 EISVGNAIVTMYGKHGMSEEAERMFDAISE 323 (754)
Q Consensus 294 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 323 (754)
......+.+...+..|+.+-+.-+++.-..
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 000112334455667777777777665433
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.29 E-value=94 Score=25.06 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHccCCCC---chhHHHHHHHHHhcCC--hhHHHHHHHHhHhcCcccC
Q 004425 298 GNAIVTMYGKHGMSEEAERMFDAISERN---LISWTALISGYVRSGH--GGKAINGFLEFLDLGICCD 360 (754)
Q Consensus 298 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 360 (754)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3556777888888888888888887652 2334444555555432 3456677777776664433
No 289
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=44.23 E-value=1.5e+02 Score=28.27 Aligned_cols=204 Identities=15% Similarity=0.125 Sum_probs=95.3
Q ss_pred HHHHHHHhHhcCCHhHHHHHhccCCCCCcc--hHHHHHHHHHHcCCh--hHHHHHHHHhHHCCCCCCcch---HHHHHHH
Q 004425 197 GTSLISMYFHSGCFREAENVFRGLAYKDVR--CVNFMILEYNKAGES--EMAFHVFVHLLSSDFEPNDYT---FTNVISV 269 (754)
Q Consensus 197 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t---~~~ll~~ 269 (754)
...+|.-|...|+.++|...++++..+.-. .-..+|......++. +.+-.++..+.. ++-+.... |..++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 467888899999999999999998876422 222333333333332 345566777753 33322222 3333333
Q ss_pred HhccC-CchHHHHHHHHHHH----hcCCCChhHHHHHHHHHHhcCC--hHHHHHHHHc------cCC----C----Cc--
Q 004425 270 CYENL-GVEEGKQLHGLAVK----FGVVREISVGNAIVTMYGKHGM--SEEAERMFDA------ISE----R----NL-- 326 (754)
Q Consensus 270 ~~~~~-~~~~a~~~~~~~~~----~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~------~~~----~----~~-- 326 (754)
+-... +.-.|..++..++. .++-|-.+.....-..-...|. +..|..++.. +.. + +.
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ee 164 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNH 164 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHH
Confidence 33222 33344444433332 3332222111110000000000 2222222211 000 0 11
Q ss_pred --hhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCC--hHHHHHHHHHHHHhCCCcchhHHHHH
Q 004425 327 --ISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSN--LELGLQLHGFAIKHGYLSDVRLGTAL 402 (754)
Q Consensus 327 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l 402 (754)
...+.++.-|...|+.++|...++++......+ ......+..+.-+.++ .+....++..+.+.|+-+.......+
T Consensus 165 lkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 165 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 124567777888888888888888774211111 1223333344444322 34556666666666655544444333
No 290
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=43.92 E-value=56 Score=32.07 Aligned_cols=81 Identities=16% Similarity=0.104 Sum_probs=37.9
Q ss_pred HHhccCCCcchhHHHHHHHHHhCCCCChhh--hHHHHHHHHccCChhHHHHHhccCCCCChhhHHHHHHHHhcCCChhHH
Q 004425 66 KISIGSGDLKLGQAVHAFLLKSGSQNDTFE--ANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGDYESV 143 (754)
Q Consensus 66 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 143 (754)
...+..|+. .+.+.+++.|..++... ..+.+...+..|..+-+..+++.-...+...-.+.+..-+..|+.+-+
T Consensus 25 ~~Aa~~g~~----~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v 100 (364)
T 3ljn_A 25 HVAARKGQT----DEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLV 100 (364)
T ss_dssp HHHHHHTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCH----HHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHH
Confidence 333444554 34445555665544321 233445555667766666666554333221111223333445555555
Q ss_pred HHHHHHH
Q 004425 144 LGIACDM 150 (754)
Q Consensus 144 ~~~~~~m 150 (754)
..+++.-
T Consensus 101 ~~Ll~~~ 107 (364)
T 3ljn_A 101 VALVEGA 107 (364)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5555543
No 291
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=43.77 E-value=1.6e+02 Score=25.48 Aligned_cols=142 Identities=13% Similarity=0.095 Sum_probs=59.3
Q ss_pred CCcHHHHHHHHHHhHhcCCHhHHHHHhccCCCCCcchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 004425 191 ENNVFVGTSLISMYFHSGCFREAENVFRGLAYKDVRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVC 270 (754)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 270 (754)
.+|..+....+..+.+.|..+....+.+.+..+|...-...+.++...|..+ +...+..+.. .++...-...+.++
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVAL 100 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3444444555555555555444444444444444444444445555555432 2233333322 13444444455555
Q ss_pred hccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcC
Q 004425 271 YENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSG 340 (754)
Q Consensus 271 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 340 (754)
.+.++.+....+.. +. -.++..+-...+.++.+.|..+....+...+..++...-...+.++.+.|
T Consensus 101 ~~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 101 GQIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHhCcHHHHHHHHH-HH---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 55444332222222 11 13344444444555555444333333333333344333334444444443
No 292
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=42.44 E-value=1.4e+02 Score=26.45 Aligned_cols=16 Identities=0% Similarity=-0.228 Sum_probs=6.7
Q ss_pred HhHhcCCHhHHHHHhc
Q 004425 203 MYFHSGCFREAENVFR 218 (754)
Q Consensus 203 ~~~~~g~~~~A~~~~~ 218 (754)
..++.|+.+-+.-+++
T Consensus 48 ~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 48 WAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHH
Confidence 3344444444444443
No 293
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=42.12 E-value=1.7e+02 Score=25.30 Aligned_cols=49 Identities=10% Similarity=0.066 Sum_probs=20.8
Q ss_pred CChhhhHHHHHHHHccCChhHHHHHhccCCCCChhhHHHHHHHHhcCCC
Q 004425 91 NDTFEANNLINLYAKFNRLDVAQKLFDGMLVRSAITWTSLIKGYLDDGD 139 (754)
Q Consensus 91 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 139 (754)
++..+-...+..+++.+..+....+.+.+..++...-...+.++.+.+.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 3444444444444444443333333333334444433344444444443
No 294
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=40.93 E-value=2.4e+02 Score=26.79 Aligned_cols=198 Identities=12% Similarity=0.106 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHccCCCCc--hhHHHHHHHHHhcCC--hhHHHHHHHHhHhcCcccChhh---HHHHHHH
Q 004425 298 GNAIVTMYGKHGMSEEAERMFDAISERNL--ISWTALISGYVRSGH--GGKAINGFLEFLDLGICCDSSC---LATVIDG 370 (754)
Q Consensus 298 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~ 370 (754)
...++.-|...|+.++|...++++..|.- .....+|..-...++ -+.+-.++..+.. ++-+.... |..++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 46788999999999999999999987642 122233333333333 2334456666653 33333322 3333333
Q ss_pred hcccC-ChHHHHHHHH----HHHHhCCCcchhHHHHHHHHHHhCCC--HHHHHHHHh------cCC---C-C----Chh-
Q 004425 371 CSVCS-NLELGLQLHG----FAIKHGYLSDVRLGTALVDIYAKGGD--LKSARMLLD------GFS---C-K----YTA- 428 (754)
Q Consensus 371 ~~~~~-~~~~a~~~~~----~~~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~------~~~---~-~----~~~- 428 (754)
+.... +...|..++. .++..++-|-.......-..-...|. +..|..++. ++. . . ...
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ee 164 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNH 164 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHH
Confidence 32221 2223333333 33333433222111100000000000 122222221 110 0 1 111
Q ss_pred ---hHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc--chHHHHHHHHHHHHhCCCCch
Q 004425 429 ---EFNAILSGFMEKIADDEEDVMVLFSQQRLAGMEPDPVTFSRLLSLSASQA--CLVRGRSLHAYSIKTGYAADV 499 (754)
Q Consensus 429 ---~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~ 499 (754)
..+.++.-|.. .|+.++|.+.++++....+.+ ......+..+.-+.+ ..+....++..+.+.|+-+..
T Consensus 165 lkkki~~lL~EY~~--~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 165 LVKEIDMLLKEYLL--SGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHHHH--HCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 25567788888 888888888888885221111 123344445555432 245566777777766654443
No 295
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=40.77 E-value=1.8e+02 Score=25.80 Aligned_cols=17 Identities=0% Similarity=-0.017 Sum_probs=9.1
Q ss_pred HhHhcCCHhHHHHHhcc
Q 004425 203 MYFHSGCFREAENVFRG 219 (754)
Q Consensus 203 ~~~~~g~~~~A~~~~~~ 219 (754)
..++.|+.+....+++.
T Consensus 9 ~A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 9 LAAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHHTTCHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 33455566555555553
No 296
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.14 E-value=1.4e+02 Score=25.73 Aligned_cols=150 Identities=13% Similarity=0.148 Sum_probs=74.6
Q ss_pred HHHHHcCChhHHHHHHHHhHHCCCCC---CcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhH--HHHHHHHHHh
Q 004425 233 LEYNKAGESEMAFHVFVHLLSSDFEP---NDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISV--GNAIVTMYGK 307 (754)
Q Consensus 233 ~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~ 307 (754)
...+..|+.+....++..- +..+ |..-.+. +...+..|+.+ +.+.+++.|..++... ..+.+...+.
T Consensus 10 ~~A~~~g~~~~v~~ll~~~---~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDT---TYQVDEVDTEGNTP-LNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGA 81 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCT---TCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHcC---CCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 3445677777776666432 2122 2222333 44445566654 4555556676654322 1234455667
Q ss_pred cCChHHHHHHHHccC-C---CCchhHHHHHHHHHhcCChhHHHHHHHHhHhcC-ccc---ChhhHHHHHHHhcccCChHH
Q 004425 308 HGMSEEAERMFDAIS-E---RNLISWTALISGYVRSGHGGKAINGFLEFLDLG-ICC---DSSCLATVIDGCSVCSNLEL 379 (754)
Q Consensus 308 ~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p---~~~~~~~ll~~~~~~~~~~~ 379 (754)
.|+.+-+..+++.-. . .|..-.+.+ ...+..|+.+-+. .+.+.| ..+ |..-.+.+..++........
T Consensus 82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~ 156 (201)
T 3hra_A 82 QGRTEILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVK----LLLEDGREDIDFQNDFGYTALIEAVGLREGNQL 156 (201)
T ss_dssp TTCHHHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHH----HHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHH
T ss_pred cCCHHHHHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHH----HHHHcCCCCcCCCCCCCCCHHHHHHHhccchhh
Confidence 788888888875433 1 222222223 3344556654333 333444 222 33333444444433333344
Q ss_pred HHHHHHHHHHhCCCcc
Q 004425 380 GLQLHGFAIKHGYLSD 395 (754)
Q Consensus 380 a~~~~~~~~~~g~~~~ 395 (754)
-.++.+.+.+.|..++
T Consensus 157 ~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 157 YQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHCCCCCC
Confidence 4566677777776554
No 297
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=39.77 E-value=61 Score=33.57 Aligned_cols=48 Identities=6% Similarity=0.068 Sum_probs=29.9
Q ss_pred HHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHH
Q 004425 640 VSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAA 687 (754)
Q Consensus 640 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 687 (754)
++..+-....+.|...|.++..+.|++...|+.||-+....|+.-+|.
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~ 206 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHH
Confidence 334444455566666667777777776666777766666666655554
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.40 E-value=70 Score=33.05 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC-c-----cH-HHHHHHHHhhcCCHHHHHHHHHhC
Q 004425 566 ISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPI-L-----EH-FACMVDLLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 566 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-----~~-~~~l~~~~~~~g~~~~A~~~~~~~ 627 (754)
..++.+++.|.+.+.+++|..+..+.. ++.. . .. +-.++..+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 467778888888888888888887762 2222 1 12 224566677788888888777643
No 299
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.04 E-value=1.3e+02 Score=23.56 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=21.8
Q ss_pred HHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 004425 652 SILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMND 695 (754)
Q Consensus 652 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 695 (754)
++..+++.+.+..+-+. +.-..|++|.++.++|++
T Consensus 48 GI~eLe~Gl~I~~~~~~---------~~g~~we~Ar~lq~KM~~ 82 (116)
T 2dl1_A 48 GIGHLLRGISISSKESE---------HTGPGWESARQMQQKMKE 82 (116)
T ss_dssp HHHHHHHHHSSCCCCTT---------CCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCC---------CCChhHHHHHHHHHHHHH
Confidence 34455556666554221 233469999999999976
No 300
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.78 E-value=97 Score=25.87 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHccCCCC---chhHHHHHHHHHhcCC--hhHHHHHHHHhHhcCcccC
Q 004425 298 GNAIVTMYGKHGMSEEAERMFDAISERN---LISWTALISGYVRSGH--GGKAINGFLEFLDLGICCD 360 (754)
Q Consensus 298 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 360 (754)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3566777888888888888888887652 2334444455554322 3456677777776654433
No 301
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=36.83 E-value=2.2e+02 Score=25.09 Aligned_cols=15 Identities=20% Similarity=0.102 Sum_probs=7.7
Q ss_pred hHhcCCHhHHHHHhc
Q 004425 204 YFHSGCFREAENVFR 218 (754)
Q Consensus 204 ~~~~g~~~~A~~~~~ 218 (754)
.++.|+++....+++
T Consensus 13 A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 13 LAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 344555555555554
No 302
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=36.40 E-value=1e+02 Score=28.95 Aligned_cols=19 Identities=0% Similarity=-0.212 Sum_probs=0.0
Q ss_pred hHHHHHHHHccCChhHHHH
Q 004425 96 ANNLINLYAKFNRLDVAQK 114 (754)
Q Consensus 96 ~~~li~~~~~~~~~~~A~~ 114 (754)
....+...+..|+.++..+
T Consensus 15 ~~~~lH~Aa~~g~~~~~~~ 33 (285)
T 3d9h_A 15 VPRGSHMASMDGKQGGMDG 33 (285)
T ss_dssp -------------------
T ss_pred HHHHHHHHhhcCCCCCccc
Confidence 3344444445555444444
No 303
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=36.25 E-value=2.2e+02 Score=24.92 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=34.1
Q ss_pred HHHHHH---HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004425 536 MLSAYA---LHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGL 580 (754)
Q Consensus 536 li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 580 (754)
+|+++. +-.+.+.|+-.+-+|++.| .|..+.-..++.+...-|.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 445553 4578999999999999999 8877777777778777765
No 304
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=35.93 E-value=1.5e+02 Score=26.34 Aligned_cols=25 Identities=8% Similarity=0.026 Sum_probs=12.7
Q ss_pred HHHHhccCCchHHHHHHHHHHHhcC
Q 004425 267 ISVCYENLGVEEGKQLHGLAVKFGV 291 (754)
Q Consensus 267 l~~~~~~~~~~~a~~~~~~~~~~g~ 291 (754)
+...+..|+.+.+..+++.+.+.|.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3344445555555555555555553
No 305
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=34.97 E-value=94 Score=30.39 Aligned_cols=13 Identities=8% Similarity=0.230 Sum_probs=6.0
Q ss_pred hCCCHHHHHHHHh
Q 004425 408 KGGDLKSARMLLD 420 (754)
Q Consensus 408 ~~g~~~~A~~~~~ 420 (754)
..|..+-+..+++
T Consensus 182 ~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 182 EFRNREALDLMMD 194 (364)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHh
Confidence 3445444444443
No 306
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=34.61 E-value=2.4e+02 Score=24.81 Aligned_cols=55 Identities=11% Similarity=-0.072 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC
Q 004425 544 GLGKGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRP 599 (754)
Q Consensus 544 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 599 (754)
+...++..+|..|...|+--... -|......+...|++.+|.++|+.-.+ .+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~-~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE-NNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcc
Confidence 33567777777777777665543 455556666677777777777777666 35555
No 307
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.31 E-value=1.2e+02 Score=27.47 Aligned_cols=21 Identities=14% Similarity=-0.107 Sum_probs=13.4
Q ss_pred HHHHHHcCChhHHHHHHHHhH
Q 004425 232 ILEYNKAGESEMAFHVFVHLL 252 (754)
Q Consensus 232 i~~~~~~g~~~~A~~~~~~m~ 252 (754)
++.+....++++|++++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 455666667777776666554
No 308
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=34.09 E-value=2e+02 Score=23.90 Aligned_cols=45 Identities=16% Similarity=0.008 Sum_probs=32.3
Q ss_pred HHHHHHHhhcc--CCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 652 SILASKRLLDL--EPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 652 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
+..+|+.+... .-..+..|...+..+...|++.+|.++++.=.++
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 66777777653 3445667888888888888888888888764443
No 309
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=33.15 E-value=1.4e+02 Score=26.65 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=24.2
Q ss_pred HHHHHHHHhCCCCChh--hhHHHHHHHHccCChhHHHHHhccC
Q 004425 79 AVHAFLLKSGSQNDTF--EANNLINLYAKFNRLDVAQKLFDGM 119 (754)
Q Consensus 79 ~~~~~~~~~g~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~~ 119 (754)
.+.+.+.+.|..++.. .....+...+..|+.+-+..+++.-
T Consensus 25 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 67 (237)
T 3b7b_A 25 DICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67 (237)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence 4556666677655432 2234555556678877777777653
No 310
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=32.91 E-value=2.3e+02 Score=24.75 Aligned_cols=71 Identities=11% Similarity=-0.032 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHH
Q 004425 617 LSEAMNLINSSPFSESPL-------LWRTLVSVSKLMANSKFSILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAA 687 (754)
Q Consensus 617 ~~~A~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 687 (754)
++-|+.+++.+...-|.. +-...+..|.+.|.+++|.+++++.+.-.|.+...-..|..+-.+...+....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~l 171 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFF 171 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHH
Confidence 456666666664332311 11234577889999999999999998888776665555555544444444333
No 311
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.59 E-value=2.6e+02 Score=25.36 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=17.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 004425 497 ADVIVGNALITMYAKCGSIDGAFQIFKG 524 (754)
Q Consensus 497 ~~~~~~~~li~~~~~~g~~~~A~~~~~~ 524 (754)
++.......+..+.+.|+-+.|.++|=+
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 3444455556667777777777777643
No 312
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=30.26 E-value=2.4e+02 Score=27.08 Aligned_cols=75 Identities=7% Similarity=-0.001 Sum_probs=54.3
Q ss_pred HHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHH----HhCCCHHHHHHHHhc
Q 004425 347 NGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLHGFAIKHGYLSDVRLGTALVDIY----AKGGDLKSARMLLDG 421 (754)
Q Consensus 347 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~ 421 (754)
+++..+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...|...-..+.-+++..+ .++.+.++...+++.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 456667778999999999999999998888999999999999988664333334444332 234466666666665
No 313
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=30.06 E-value=1.5e+02 Score=21.20 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=39.5
Q ss_pred HHHHhCCCCCChhhHHHHHHHhccCC-ChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhHhcCCH
Q 004425 148 CDMYRSEEKFNEHTCSVILEACSLLE-DRIFGEQIHAFAIKSGFENNVFVGTSLISMYFHSGCF 210 (754)
Q Consensus 148 ~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 210 (754)
+.|.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34566777766544 45556665554 4566778888887776666666666666777666643
No 314
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.97 E-value=2.5e+02 Score=23.70 Aligned_cols=45 Identities=11% Similarity=0.022 Sum_probs=29.4
Q ss_pred HHHHHHHhhc--cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004425 652 SILASKRLLD--LEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDL 696 (754)
Q Consensus 652 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 696 (754)
...+|+.+.. +.-..+..|...+..+...|++.+|.++++.=.++
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4455666655 33445667777777777777888887777754443
No 315
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=29.63 E-value=2e+02 Score=25.50 Aligned_cols=21 Identities=19% Similarity=0.061 Sum_probs=11.1
Q ss_pred HHhcccCChHHHHHHHHHHHH
Q 004425 369 DGCSVCSNLELGLQLHGFAIK 389 (754)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~ 389 (754)
......|+.+.+.++.+.+.+
T Consensus 215 ~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 215 QCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 334455555556655555543
No 316
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=27.10 E-value=72 Score=16.47 Aligned_cols=17 Identities=24% Similarity=0.651 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 004425 726 SEEIYSKLDLLNDEMKL 742 (754)
Q Consensus 726 ~~~~~~~l~~l~~~~~~ 742 (754)
+.++|.+|+.|...+++
T Consensus 3 adelykeledlqerlrk 19 (27)
T 3twe_A 3 ADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788888888776665
No 317
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.54 E-value=2.2e+02 Score=25.05 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=40.7
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChh--HHHHHHHHHHhc
Q 004425 231 MILEYNKAGESEMAFHVFVHLLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREIS--VGNAIVTMYGKH 308 (754)
Q Consensus 231 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~ 308 (754)
.+...++.|+.+....++..-...--.+|..-.+. +...+..|+.+ +++.+.+.|..++.. ...+.+...+..
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTE----IVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 35556677888777777765322111223333333 33334455544 344444556544321 112233444555
Q ss_pred CChHHHHHHHHc
Q 004425 309 GMSEEAERMFDA 320 (754)
Q Consensus 309 g~~~~A~~~~~~ 320 (754)
|+.+-+..+++.
T Consensus 84 ~~~~~v~~Ll~~ 95 (231)
T 3aji_A 84 GXDEIVKALLVK 95 (231)
T ss_dssp TCHHHHHHHHHT
T ss_pred CHHHHHHHHHHc
Confidence 666655555554
No 318
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.44 E-value=4.6e+02 Score=25.55 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCC
Q 004425 502 GNALITMYAKCGSIDGAFQIFKGISDRDI---VSWNAMLSAYALHGL--GKGALLLFEEMKREGFAPD 564 (754)
Q Consensus 502 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 564 (754)
.+.++.=|...|+.++|.+.++++..|.. +....+..++-+.++ .+....++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 46778888888999999999998887642 233444444443333 3456677777777665543
No 319
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.11 E-value=3.6e+02 Score=30.63 Aligned_cols=128 Identities=12% Similarity=-0.030 Sum_probs=62.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHhhcC
Q 004425 536 MLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLRPILEHFACMVDLLGRAG 615 (754)
Q Consensus 536 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 615 (754)
++..+...|.++-|.++. . -.+-+...--.+..+|...|++++|..+|+++.. |+........
T Consensus 816 l~~~L~~~~~~~~a~eL~----~-~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~--gl~~~~~~~~---------- 878 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G-WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFA---------- 878 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G-GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--TTCSSCCSCG----------
T ss_pred HHHHHHHhcHHHHHHHHH----h-hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcccCccccc----------
Confidence 445555566655443322 1 1222333223455566677777777777766532 4433221100
Q ss_pred CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhcc-CCCCcc----hHHHHHHHHHhc
Q 004425 616 RLSEAMNLINSSPFSE-SPLLWRTLVSVSKLMANSKFSILASKRLLDL-EPKDAG----SFILVSNMYAGQ 680 (754)
Q Consensus 616 ~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~----~~~~l~~~~~~~ 680 (754)
..++...++....... ....|..++..+..++-++-+.+..+.+++. .++|+. .|..+..+.+..
T Consensus 879 ~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 879 VLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp GGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 0011112222221111 2346667777777778888888888887763 444443 344444444433
No 320
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=25.33 E-value=1.5e+02 Score=27.21 Aligned_cols=86 Identities=9% Similarity=-0.062 Sum_probs=41.1
Q ss_pred HHHcCChhHHHHHHHHhHHCCCCC-------CcchHHHHHHHHh--ccCCchHHHHHHHHHHHhc---------CC-CCh
Q 004425 235 YNKAGESEMAFHVFVHLLSSDFEP-------NDYTFTNVISVCY--ENLGVEEGKQLHGLAVKFG---------VV-REI 295 (754)
Q Consensus 235 ~~~~g~~~~A~~~~~~m~~~g~~p-------~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~-~~~ 295 (754)
.++.|+.+.+..+++...+.+... |..-.+.|..++. +.|+.+-+..+++.-...+ .. .|.
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~ 99 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYY 99 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTT
T ss_pred HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccC
Confidence 345666666666666555554322 2333444444443 2466665555555432211 00 111
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHcc
Q 004425 296 SVGNAIVTMYGKHGMSEEAERMFDAI 321 (754)
Q Consensus 296 ~~~~~li~~~~~~g~~~~A~~~~~~~ 321 (754)
. ..+.+...+..|+.+-+.-+++.-
T Consensus 100 ~-g~tpL~~A~~~g~~~~v~~Ll~~g 124 (273)
T 2pnn_A 100 K-GQTALHIAIERRNMTLVTLLVENG 124 (273)
T ss_dssp T-TCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred C-CCCHHHHHHHcCCHHHHHHHHHCC
Confidence 1 122334445566766666666653
No 321
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=25.19 E-value=2.2e+02 Score=25.72 Aligned_cols=89 Identities=10% Similarity=-0.070 Sum_probs=47.7
Q ss_pred HHHHHHcCChhHHHHHHHHhHHCCCCCCc-------chHHHHHHHHhcc---CCchHHHHHHHHHHHhcCCC--------
Q 004425 232 ILEYNKAGESEMAFHVFVHLLSSDFEPND-------YTFTNVISVCYEN---LGVEEGKQLHGLAVKFGVVR-------- 293 (754)
Q Consensus 232 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~g~~~-------- 293 (754)
+...++.|+.+.+..+++.+.+.|..++. .-.+.|..+ +.. |+.+-++.+++.-...+...
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 44456667777776677766666655443 223334333 333 67766666665544332111
Q ss_pred --ChhHHHHHHHHHHhcCChHHHHHHHHccC
Q 004425 294 --EISVGNAIVTMYGKHGMSEEAERMFDAIS 322 (754)
Q Consensus 294 --~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 322 (754)
|. ...+.+...+..|+.+-+..+++.-.
T Consensus 85 ~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga 114 (256)
T 2etb_A 85 DEFY-QGHSALHIAIEKRSLQCVKLLVENGA 114 (256)
T ss_dssp STTT-TTCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccc-cCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 11 12234445566777777777776543
No 322
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.15 E-value=1.8e+02 Score=25.76 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCcc------HHHHHHHHHhhcCCHHHHHHHHHhC
Q 004425 581 SEGGICLFNEIEQIYGLRPILE------HFACMVDLLGRAGRLSEAMNLINSS 627 (754)
Q Consensus 581 ~~~a~~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (754)
++.|+.+|+.+.++..+..+.. .-...+-.|.+.|.+++|.+++++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4556666766666432221110 0113444566677777777777654
No 323
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=24.50 E-value=1.6e+02 Score=27.19 Aligned_cols=15 Identities=0% Similarity=-0.070 Sum_probs=7.3
Q ss_pred HhcCCHhHHHHHhcc
Q 004425 205 FHSGCFREAENVFRG 219 (754)
Q Consensus 205 ~~~g~~~~A~~~~~~ 219 (754)
+..|+.+-+.-+++.
T Consensus 109 ~~~g~~~~v~~Ll~~ 123 (273)
T 2pnn_A 109 IERRNMTLVTLLVEN 123 (273)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHC
Confidence 344555555555443
No 324
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=24.20 E-value=4.6e+02 Score=24.76 Aligned_cols=20 Identities=30% Similarity=0.487 Sum_probs=9.9
Q ss_pred HHHHHHccCChhHHHHHhcc
Q 004425 99 LINLYAKFNRLDVAQKLFDG 118 (754)
Q Consensus 99 li~~~~~~~~~~~A~~~~~~ 118 (754)
.+...+..|+.+-+..+++.
T Consensus 61 ~L~~A~~~g~~~~v~~Ll~~ 80 (351)
T 3utm_A 61 PLHLAAGYNRVRIVQLLLQH 80 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 34444455555555555543
No 325
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=24.00 E-value=6.7e+02 Score=26.64 Aligned_cols=364 Identities=9% Similarity=-0.052 Sum_probs=180.7
Q ss_pred HHHHHHHhcCChHHHHHHHHccCCCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHH
Q 004425 300 AIVTMYGKHGMSEEAERMFDAISERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLEL 379 (754)
Q Consensus 300 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 379 (754)
.-+..+.+.+++.....++.. ...+...-.....+....|+..+|.....++-..|. .....+..++..+.+.|.+..
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCH
Confidence 334455566677766665555 323444444556666677776666666666554442 234445555555554443221
Q ss_pred --HHHHHHHHHHhC-----------CCcch-hHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhhHHHHHHHHhhhhcCCH
Q 004425 380 --GLQLHGFAIKHG-----------YLSDV-RLGTALVDIYAKGGDLKSARMLLDGFSCKYTAEFNAILSGFMEKIADDE 445 (754)
Q Consensus 380 --a~~~~~~~~~~g-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 445 (754)
...-+..+...| +.++. .....++..+.+- ..+....... .++...-..+..++.+....+.
T Consensus 155 ~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~~-~~~~~~~~~~~~~~~rlar~d~ 230 (618)
T 1qsa_A 155 LAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTT-GATDFTRQMAAVAFASVARQDA 230 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-CCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhcc-CCChhhHHHHHHHHHHHHhcCH
Confidence 111112222111 11111 1122222222221 1222222221 1122211222222322224588
Q ss_pred HHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004425 446 EDVMVLFSQQRLAGMEPDPVT----FSRLLSLSASQACLVRGRSLHAYSIKTGYAADVIVGNALITMYAKCGSIDGAFQI 521 (754)
Q Consensus 446 ~~A~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 521 (754)
+.|..++....... ..+... ...+.......+...++...+....... .+.....-.+..-.+.|+++.|...
T Consensus 231 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 231 ENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp HHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999998887643 223322 2233333444453455555555544432 3333344444555678999999999
Q ss_pred HhccCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCC
Q 004425 522 FKGISDRD---IVSWNAMLSAYALHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGLSEGGICLFNEIEQIYGLR 598 (754)
Q Consensus 522 ~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 598 (754)
|+.|.... ....-=+..++...|+.++|..+|+++.+ +. +|-.++.+ .+.|..-.. .. ....
T Consensus 308 ~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~--~fYg~lAa-~~Lg~~~~~-----~~---~~~~ 372 (618)
T 1qsa_A 308 LARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QR--GFYPMVAA-QRIGEEYEL-----KI---DKAP 372 (618)
T ss_dssp HHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC--SHHHHHHH-HHTTCCCCC-----CC---CCCC
T ss_pred HHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC--ChHHHHHH-HHcCCCCCC-----CC---CCCC
Confidence 99997632 11122255677788999999999999875 22 34444332 222221000 00 0001
Q ss_pred CC-cc-----HHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC---CCcch
Q 004425 599 PI-LE-----HFACMVDLLGRAGRLSEAMNLINSSPFSESPLLWRTLVSVSKLMANSKFSILASKRLLDLEP---KDAGS 669 (754)
Q Consensus 599 p~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~~~~ 669 (754)
+. .. .-..-+..+...|...+|...+.......+......+.......|..+.++....+....+- ..+..
T Consensus 373 ~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~ 452 (618)
T 1qsa_A 373 QNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLA 452 (618)
T ss_dssp SCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCT
T ss_pred hhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcc
Confidence 10 11 11234556778899999988776552234444445555666677888888877655433220 12334
Q ss_pred HHHHHHHHHhcCCchHHH
Q 004425 670 FILVSNMYAGQGMLDEAA 687 (754)
Q Consensus 670 ~~~l~~~~~~~g~~~~a~ 687 (754)
|..+..-+++.-..+.+.
T Consensus 453 y~~~i~~~a~~~gv~~~l 470 (618)
T 1qsa_A 453 YNDLFKRYTSGKEIPQSY 470 (618)
T ss_dssp THHHHHHHHTTSSSCHHH
T ss_pred hHHHHHHHHHHcCCCHHH
Confidence 555555566555555443
No 326
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.92 E-value=3.4e+02 Score=23.16 Aligned_cols=89 Identities=10% Similarity=0.063 Sum_probs=41.6
Q ss_pred HhcCChHHHHHHHHccCCC-C-chhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhh---HHHHHHHhcc-cCChHH
Q 004425 306 GKHGMSEEAERMFDAISER-N-LISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSC---LATVIDGCSV-CSNLEL 379 (754)
Q Consensus 306 ~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~-~~~~~~ 379 (754)
++.|+++....++..-... + ..-+ +.+...+..|+.+.-.++.+-+++.|..++... .+.|..++.. ..+...
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~ 92 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITG 92 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHH
T ss_pred HHcCCHHHHHHHHhcCcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhh
Confidence 4455555555555433211 1 1112 233344455665555666666777776665431 2223322221 223334
Q ss_pred HHHHHHHHHHhCCCcc
Q 004425 380 GLQLHGFAIKHGYLSD 395 (754)
Q Consensus 380 a~~~~~~~~~~g~~~~ 395 (754)
..++.+.+++.|..++
T Consensus 93 ~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 93 TTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHCCCCCC
Confidence 4455566666665443
No 327
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.61 E-value=2e+02 Score=20.47 Aligned_cols=60 Identities=10% Similarity=0.103 Sum_probs=37.4
Q ss_pred HhHHCCCCCCcchHHHHHHHHhccC-CchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 004425 250 HLLSSDFEPNDYTFTNVISVCYENL-GVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGM 310 (754)
Q Consensus 250 ~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 310 (754)
.|.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4566777765543 44556665554 556677788887777655566666666666666554
No 328
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=23.60 E-value=1.8e+02 Score=23.40 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=11.7
Q ss_pred HHHHHHhhhhcCCHHHHHHHHHHH
Q 004425 432 AILSGFMEKIADDEEDVMVLFSQQ 455 (754)
Q Consensus 432 ~li~~~~~~~~~~~~~A~~~~~~m 455 (754)
.++.-|.. .|+.++|.+.++++
T Consensus 12 ~ll~EY~~--~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLL--SGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHH--HCCHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHHHh
Confidence 34444554 55555555555555
No 329
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=23.20 E-value=4.8e+02 Score=24.65 Aligned_cols=274 Identities=12% Similarity=0.067 Sum_probs=126.4
Q ss_pred hHHHHHHHHccCChhHHHHHhccCCCCCh---h-hHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCChhhH--HHHHHHh
Q 004425 96 ANNLINLYAKFNRLDVAQKLFDGMLVRSA---I-TWTSLIKGYLDDGDYESVLGIACDMYRSEEKFNEHTC--SVILEAC 169 (754)
Q Consensus 96 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~ 169 (754)
-+.++..-++.|+++-+..+++.-..+|. . -++.|. .-++.|+.+ +.+.+.+.|..|+.... ...+...
T Consensus 25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh-~A~~~g~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLH-NAVQMSRED----IVELLLRHGADPVLRKKNGATPFILA 99 (337)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHH-HHHHcCCHH----HHHHHHHcCCchhhhccCCCchhHHH
Confidence 35566666788999988888876433322 1 233333 334556644 44455566655543210 0111111
Q ss_pred ccCCChHHHHHHHHHHHHHCCCCcH---HHHHHHHHHhHhcCCHhHHHHHhccCCCC-------------CcchHHHHHH
Q 004425 170 SLLEDRIFGEQIHAFAIKSGFENNV---FVGTSLISMYFHSGCFREAENVFRGLAYK-------------DVRCVNFMIL 233 (754)
Q Consensus 170 ~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~li~ 233 (754)
...+.... .......+...+. .-.+ .+...+..|..+-+..+++.-... +..-++.| .
T Consensus 100 ~~~~~~~~----~~~~~~~~~~~~~~d~~g~t-~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L-~ 173 (337)
T 4g8k_A 100 AIAGSVKL----LKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL-M 173 (337)
T ss_dssp HHHTCHHH----HHHHHTTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHH-H
T ss_pred Hhcccchh----hHHhhhccchhhhhccCCCC-HHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHH-H
Confidence 11122211 1222223322211 1111 223334566666666655432211 11112333 3
Q ss_pred HHHHcCChhHHHHHHHHhHHCCCCCCcc---hHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChh--HHHHHHHHHHhc
Q 004425 234 EYNKAGESEMAFHVFVHLLSSDFEPNDY---TFTNVISVCYENLGVEEGKQLHGLAVKFGVVREIS--VGNAIVTMYGKH 308 (754)
Q Consensus 234 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~ 308 (754)
..++.|+.+-+..+++ +.|..++.. ..+.+..++. .+.......+.+.+++.|..++.. ...+.+...+..
T Consensus 174 ~A~~~g~~~~v~~LL~---~~gad~n~~d~~g~t~l~~~~~-~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~ 249 (337)
T 4g8k_A 174 DAAEKGHVEVLKILLD---EMGADVNACDNMGRNALIHALL-SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 249 (337)
T ss_dssp HHHHHTCHHHHHHHHH---HSCCCTTCCCTTSCCHHHHHHH-HSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHh---ccCCCcCccCCCCCcHHHHHHH-HcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh
Confidence 3455666654444333 235444322 2223333222 222333345556667777666432 122345566778
Q ss_pred CChHHHHHHHHccC----CCCchhHHHHHHHHHhcCChhHHHHHHHHhHhcCcccChhhHHHHHHHhcccCChHHHHHHH
Q 004425 309 GMSEEAERMFDAIS----ERNLISWTALISGYVRSGHGGKAINGFLEFLDLGICCDSSCLATVIDGCSVCSNLELGLQLH 384 (754)
Q Consensus 309 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 384 (754)
|..+.+..+++.-. .+|..-++.|..+ ++.|+. ++.+.+++.|..+|..+ . +...++.|+.+ +.
T Consensus 250 ~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~----~iv~~Ll~~GAd~n~~~--~-L~~A~~~~~~~----iv 317 (337)
T 4g8k_A 250 KHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLK----KIAELLCKRGASTDCGD--L-VMTARRNYDHS----LV 317 (337)
T ss_dssp TCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCH----HHHHHHHTTSCSSTTCC--H-HHHHHHTTCHH----HH
T ss_pred hhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCH----HHHHHHHHCCCCCCCCC--H-HHHHHHcCCHH----HH
Confidence 88888777776422 1233333444333 445554 34455567787777665 2 33334455543 45
Q ss_pred HHHHHhCCCcch
Q 004425 385 GFAIKHGYLSDV 396 (754)
Q Consensus 385 ~~~~~~g~~~~~ 396 (754)
+.+++.|-.+|.
T Consensus 318 ~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 318 KVLLSHGAKEDF 329 (337)
T ss_dssp HHHHHTTCCC--
T ss_pred HHHHHCcCCCCC
Confidence 556667766653
No 330
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.79 E-value=1.5e+02 Score=24.39 Aligned_cols=60 Identities=3% Similarity=-0.002 Sum_probs=28.0
Q ss_pred hHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 004425 251 LLSSDFEPNDYTFTNVISVCYENLGVEEGKQLHGLAVKFGVVREISVGNAIVTMYGKHGMS 311 (754)
Q Consensus 251 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 311 (754)
|.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4445555443322 23333333344445555555555554444444444444555555543
No 331
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=22.28 E-value=3.9e+02 Score=23.62 Aligned_cols=46 Identities=24% Similarity=0.269 Sum_probs=35.6
Q ss_pred HHHHHHH---HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004425 535 AMLSAYA---LHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGL 580 (754)
Q Consensus 535 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 580 (754)
-+|+++. +-.+.+.|+-.+-+|++.|-.|..+.-..++.+...-|.
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3455553 457899999999999999988888877777777776664
No 332
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.23 E-value=5.3e+02 Score=24.80 Aligned_cols=62 Identities=19% Similarity=0.145 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCChh--hHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCC
Q 004425 400 TALVDIYAKGGDLKSARMLLDGFSCKYTA--EFNAILSGFMEKIADDEEDVMVLFSQQRLAGME 461 (754)
Q Consensus 400 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~~~A~~~~~~m~~~g~~ 461 (754)
..++.-|...|+.++|...++++..|.-. .....+.....+.....+.+..++..+.+.|+-
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 44566666677777777777777644211 111122222220011234455666666665543
No 333
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=21.84 E-value=88 Score=23.15 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=20.5
Q ss_pred ChHHHHHHHHHHHHHHHHcCCCCC
Q 004425 725 ESEEIYSKLDLLNDEMKLKVKDSS 748 (754)
Q Consensus 725 ~~~~~~~~l~~l~~~~~~~~~~~~ 748 (754)
+...|...+++-..++|..||.||
T Consensus 14 dlirIl~~ieekinELk~dG~ePD 37 (103)
T 2pk8_A 14 DLIRILGEIEEKMNELKMDGFNPD 37 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCC
Confidence 346688888888999999999998
No 334
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.77 E-value=2.3e+02 Score=29.33 Aligned_cols=66 Identities=8% Similarity=0.095 Sum_probs=39.9
Q ss_pred cHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC---H---HHHH-HHHHHHHhcCChHHHHHHHHHhhccCCCCc
Q 004425 602 EHFACMVDLLGRAGRLSEAMNLINSSPFSES---P---LLWR-TLVSVSKLMANSKFSILASKRLLDLEPKDA 667 (754)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~---~---~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 667 (754)
..+++++..|...+.++.|..++.+..++.. . ..|. -++......+++.+|.+.+..++..-|.+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 3566777777777777888887776643211 1 1111 223444566777777777777777666544
No 335
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.60 E-value=1.3e+02 Score=29.16 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhH
Q 004425 329 WTALISGYVRSGHGGKAINGFLEFL 353 (754)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~ 353 (754)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 5667888888899999988888874
No 336
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=21.59 E-value=5.3e+02 Score=24.58 Aligned_cols=42 Identities=7% Similarity=0.094 Sum_probs=26.4
Q ss_pred HHHHHHHHHCCCCcHHHHHHHHHHhHhcCCHhHHHHHhccCC
Q 004425 180 QIHAFAIKSGFENNVFVGTSLISMYFHSGCFREAENVFRGLA 221 (754)
Q Consensus 180 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 221 (754)
+++..+.+.|+.|..++..-++..+++.=.++.+.++++.+-
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l 250 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIF 250 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Confidence 455566666666666666666666666656666666666443
No 337
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.53 E-value=3.8e+02 Score=22.84 Aligned_cols=89 Identities=11% Similarity=0.129 Sum_probs=42.4
Q ss_pred HhcCCHhHHHHHhccCCCC-C-cchHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCcch---HHHHHHHHhc-cCCchH
Q 004425 205 FHSGCFREAENVFRGLAYK-D-VRCVNFMILEYNKAGESEMAFHVFVHLLSSDFEPNDYT---FTNVISVCYE-NLGVEE 278 (754)
Q Consensus 205 ~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~-~~~~~~ 278 (754)
++.|+++....+++.-... + ..-++ .+...+..|+.+.-.++.+.+.+.|..++... .+.|..++.. ..+...
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~T-~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~ 92 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKSN-ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITG 92 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTTT-HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHH
T ss_pred HHcCCHHHHHHHHhcCcccccccCCCC-HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhh
Confidence 4456666655555432211 1 11122 33344455665555666667777776665432 2333333222 223333
Q ss_pred HHHHHHHHHHhcCCCC
Q 004425 279 GKQLHGLAVKFGVVRE 294 (754)
Q Consensus 279 a~~~~~~~~~~g~~~~ 294 (754)
..++.+.+++.|..++
T Consensus 93 ~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 93 TTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHCCCCCC
Confidence 4455666666665544
No 338
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.37 E-value=2.6e+02 Score=23.58 Aligned_cols=49 Identities=8% Similarity=0.024 Sum_probs=34.1
Q ss_pred hcCCHHHHHHHHHhC--C-CCC--CHHHHHHHHH-H-----HHhcCChHHHHHHHHHhhc
Q 004425 613 RAGRLSEAMNLINSS--P-FSE--SPLLWRTLVS-V-----SKLMANSKFSILASKRLLD 661 (754)
Q Consensus 613 ~~g~~~~A~~~~~~~--~-~~p--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~ 661 (754)
..|++-+|-++++.. . ..+ +...|..|++ . ..+.||.+.|..++++++.
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 348888888888765 1 123 4566777776 2 2356999999999998876
No 339
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.21 E-value=2.8e+02 Score=24.18 Aligned_cols=45 Identities=18% Similarity=0.085 Sum_probs=34.2
Q ss_pred HHHHHH---HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004425 536 MLSAYA---LHGLGKGALLLFEEMKREGFAPDDISILGVLQACIYSGL 580 (754)
Q Consensus 536 li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 580 (754)
+|+++. +-.+.+.|+-.+-+|++.|-.|..+.-..++.+...-|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 455553 457899999999999999988887777777777766654
No 340
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.81 E-value=93 Score=20.99 Aligned_cols=46 Identities=20% Similarity=0.128 Sum_probs=25.4
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004425 653 ILASKRLLDLEPKDAGSFILVSNMYAGQGMLDEAAKVRTTMNDLRLS 699 (754)
Q Consensus 653 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 699 (754)
+...+.+.++.|+ ......-.-+-...|+.+.|...+-.|...+.+
T Consensus 10 ee~l~~L~emFP~-ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~ 55 (59)
T 1wgl_A 10 EEDLKAIQDMFPN-MDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSG 55 (59)
T ss_dssp HHHHHHHHHHCSS-SCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCS
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCC
Confidence 3444555566666 223333333445567777777777776554443
No 341
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=20.63 E-value=2.1e+02 Score=26.61 Aligned_cols=21 Identities=10% Similarity=-0.037 Sum_probs=11.8
Q ss_pred HHHHHHHccCChhHHHHHhcc
Q 004425 98 NLINLYAKFNRLDVAQKLFDG 118 (754)
Q Consensus 98 ~li~~~~~~~~~~~A~~~~~~ 118 (754)
+.+...+..|+.+.+..+++.
T Consensus 61 t~L~~Aa~~g~~~~v~~Ll~~ 81 (285)
T 3d9h_A 61 SPMHEAAIHGHQLSLRNLISQ 81 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHcCCHHHHHHHHHC
Confidence 344445556666666666554
No 342
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.13 E-value=4.5e+02 Score=23.47 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCC
Q 004425 547 KGALLLFEEMKREGFAPDDI-SILGVLQACIYSGLSEGGICLFNEIEQIYGLRP 599 (754)
Q Consensus 547 ~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 599 (754)
+++..+|..|...|+--... -|......+...|++.+|..+|+.-++ .+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR-MKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcc
Confidence 45667777777777665543 455556666677777777777777666 35555
Done!