Query 004426
Match_columns 754
No_of_seqs 506 out of 2147
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 23:14:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 1.4E-33 3E-38 308.3 24.9 297 418-738 217-524 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 1.8E-33 4E-38 307.4 23.6 348 387-742 122-487 (966)
3 PHA02790 Kelch-like protein; P 100.0 2.4E-28 5.2E-33 279.3 15.1 165 220-393 25-196 (480)
4 PHA02713 hypothetical protein; 100.0 6.5E-28 1.4E-32 279.9 17.8 191 213-412 21-218 (557)
5 KOG4441 Proteins containing BT 100.0 1.7E-27 3.6E-32 275.9 18.7 189 214-412 33-229 (571)
6 PHA03098 kelch-like protein; P 99.9 4E-27 8.6E-32 273.2 18.5 189 214-412 6-200 (534)
7 TIGR00990 3a0801s09 mitochondr 99.9 8E-25 1.7E-29 258.1 35.8 282 398-707 143-500 (615)
8 TIGR00990 3a0801s09 mitochondr 99.9 6.7E-24 1.5E-28 250.3 36.5 326 381-738 160-569 (615)
9 KOG4350 Uncharacterized conser 99.9 8.6E-26 1.9E-30 236.9 12.5 200 210-417 37-241 (620)
10 PRK15174 Vi polysaccharide exp 99.9 1.7E-22 3.6E-27 239.5 37.4 317 398-742 58-383 (656)
11 PRK15174 Vi polysaccharide exp 99.9 4.9E-22 1.1E-26 235.5 33.8 284 397-707 91-385 (656)
12 PRK11447 cellulose synthase su 99.9 7.9E-22 1.7E-26 247.7 35.3 307 398-707 285-704 (1157)
13 TIGR02917 PEP_TPR_lipo putativ 99.9 1.3E-20 2.8E-25 227.4 39.7 333 398-738 549-898 (899)
14 TIGR02917 PEP_TPR_lipo putativ 99.9 2.4E-20 5.3E-25 224.9 38.3 312 398-719 481-816 (899)
15 KOG0547 Translocase of outer m 99.9 3.2E-21 6.9E-26 208.2 26.6 298 413-738 109-530 (606)
16 PRK11447 cellulose synthase su 99.9 8.6E-20 1.9E-24 229.4 41.6 306 424-739 274-699 (1157)
17 PRK09782 bacteriophage N4 rece 99.9 7E-21 1.5E-25 231.7 29.7 266 418-709 476-746 (987)
18 KOG0547 Translocase of outer m 99.9 1.3E-20 2.8E-25 203.5 25.2 319 398-720 131-582 (606)
19 PRK11788 tetratricopeptide rep 99.9 1.1E-19 2.3E-24 201.7 33.3 288 421-738 37-345 (389)
20 PRK09782 bacteriophage N4 rece 99.9 2.2E-19 4.7E-24 218.7 30.9 289 419-708 376-711 (987)
21 KOG1126 DNA-binding cell divis 99.8 9.4E-20 2E-24 204.0 23.3 265 420-708 354-625 (638)
22 PRK11189 lipoprotein NlpI; Pro 99.8 3.2E-19 7E-24 191.9 23.6 188 498-713 81-276 (296)
23 KOG0624 dsRNA-activated protei 99.8 1.7E-19 3.6E-24 187.6 19.5 219 482-713 42-265 (504)
24 PRK11788 tetratricopeptide rep 99.8 1.1E-17 2.4E-22 185.6 32.1 278 398-702 51-346 (389)
25 PRK10049 pgaA outer membrane p 99.8 1.6E-17 3.5E-22 200.6 34.7 306 398-708 99-461 (765)
26 PRK10049 pgaA outer membrane p 99.8 5.7E-17 1.2E-21 195.8 35.3 309 419-740 49-456 (765)
27 PLN02789 farnesyltranstransfer 99.8 1.1E-17 2.4E-22 181.1 24.5 195 498-716 54-266 (320)
28 PRK12370 invasion protein regu 99.8 1.3E-17 2.8E-22 194.4 25.1 226 466-717 276-519 (553)
29 PRK11189 lipoprotein NlpI; Pro 99.8 9.4E-18 2E-22 180.6 21.3 234 434-689 41-286 (296)
30 KOG2075 Topoisomerase TOP1-int 99.8 1.3E-18 2.8E-23 188.0 12.9 177 213-395 110-298 (521)
31 KOG1126 DNA-binding cell divis 99.8 5.8E-17 1.3E-21 181.8 24.3 260 432-716 332-600 (638)
32 PRK12370 invasion protein regu 99.8 5.3E-17 1.1E-21 189.3 25.1 187 498-708 278-475 (553)
33 KOG0548 Molecular co-chaperone 99.7 1.9E-16 4E-21 174.1 23.4 89 621-709 372-461 (539)
34 PLN02789 farnesyltranstransfer 99.7 2.8E-16 6.1E-21 170.2 24.1 222 433-686 34-267 (320)
35 KOG0624 dsRNA-activated protei 99.7 4E-16 8.7E-21 162.6 22.5 278 418-708 71-375 (504)
36 TIGR02521 type_IV_pilW type IV 99.7 1.9E-15 4E-20 152.4 23.6 186 498-705 48-234 (234)
37 KOG0550 Molecular chaperone (D 99.7 2.7E-16 5.8E-21 167.7 16.7 277 417-706 47-353 (486)
38 PF13429 TPR_15: Tetratricopep 99.7 9.9E-17 2.1E-21 170.9 13.5 254 424-703 13-277 (280)
39 KOG2002 TPR-containing nuclear 99.7 4.4E-14 9.6E-19 163.7 35.9 304 400-703 288-709 (1018)
40 KOG1173 Anaphase-promoting com 99.7 4.4E-15 9.5E-20 163.8 25.1 268 428-720 253-536 (611)
41 KOG1155 Anaphase-promoting com 99.7 5.7E-14 1.2E-18 151.8 32.8 254 424-702 232-494 (559)
42 TIGR02521 type_IV_pilW type IV 99.7 6.1E-15 1.3E-19 148.6 23.0 198 514-735 30-230 (234)
43 PF00651 BTB: BTB/POZ domain; 99.7 1.3E-16 2.9E-21 145.5 8.5 101 214-317 7-110 (111)
44 KOG1125 TPR repeat-containing 99.7 3.5E-15 7.5E-20 165.3 19.5 234 498-741 302-555 (579)
45 KOG2002 TPR-containing nuclear 99.7 6.7E-14 1.5E-18 162.2 30.3 328 399-735 147-558 (1018)
46 PRK15359 type III secretion sy 99.7 1.8E-15 3.9E-20 145.7 14.8 124 503-687 15-139 (144)
47 PRK15359 type III secretion sy 99.6 2.9E-15 6.3E-20 144.2 15.3 125 535-719 13-138 (144)
48 TIGR00540 hemY_coli hemY prote 99.6 1.8E-13 4E-18 153.9 32.0 285 418-722 83-385 (409)
49 KOG4591 Uncharacterized conser 99.6 8.1E-16 1.7E-20 148.9 10.2 142 215-363 64-209 (280)
50 KOG1129 TPR repeat-containing 99.6 4.8E-15 1E-19 153.9 15.7 238 424-686 228-475 (478)
51 KOG4682 Uncharacterized conser 99.6 2.8E-15 6.1E-20 158.8 12.4 177 213-396 65-251 (488)
52 smart00225 BTB Broad-Complex, 99.6 2.7E-15 5.9E-20 129.8 9.5 89 220-311 2-90 (90)
53 COG3063 PilF Tfp pilus assembl 99.6 6.3E-14 1.4E-18 140.5 19.0 172 485-715 42-214 (250)
54 KOG2076 RNA polymerase III tra 99.6 4E-13 8.8E-18 155.1 27.8 279 423-701 143-510 (895)
55 PF13429 TPR_15: Tetratricopep 99.6 6.4E-15 1.4E-19 157.0 12.4 243 456-723 13-264 (280)
56 KOG1174 Anaphase-promoting com 99.6 1.5E-12 3.2E-17 139.2 29.5 278 421-725 234-521 (564)
57 KOG1155 Anaphase-promoting com 99.6 3.8E-13 8.2E-18 145.6 25.2 257 424-708 267-541 (559)
58 KOG1125 TPR repeat-containing 99.6 8.2E-14 1.8E-18 154.6 19.7 221 423-672 289-530 (579)
59 PRK10747 putative protoheme IX 99.6 2.7E-12 5.9E-17 144.0 30.6 275 418-719 83-373 (398)
60 KOG0783 Uncharacterized conser 99.6 3.5E-15 7.7E-20 168.5 6.5 131 225-358 719-854 (1267)
61 TIGR00540 hemY_coli hemY prote 99.5 3.1E-12 6.7E-17 144.0 29.9 277 400-703 102-399 (409)
62 KOG0548 Molecular co-chaperone 99.5 6.2E-13 1.3E-17 146.6 21.6 245 419-699 224-485 (539)
63 KOG4162 Predicted calmodulin-b 99.5 1.4E-11 3E-16 140.5 30.1 121 461-581 404-546 (799)
64 TIGR03302 OM_YfiO outer membra 99.5 1.9E-12 4.1E-17 134.0 21.0 181 509-703 27-232 (235)
65 PRK14574 hmsH outer membrane p 99.5 1.1E-11 2.3E-16 149.2 29.9 313 420-739 35-395 (822)
66 PRK14574 hmsH outer membrane p 99.5 3.2E-11 7E-16 145.1 31.9 84 625-708 435-518 (822)
67 KOG1173 Anaphase-promoting com 99.5 5.7E-12 1.2E-16 139.5 21.7 215 454-686 315-535 (611)
68 KOG0550 Molecular chaperone (D 99.4 6.3E-13 1.4E-17 142.3 13.3 98 621-718 217-332 (486)
69 PRK15179 Vi polysaccharide bio 99.4 7E-12 1.5E-16 148.3 23.3 143 548-714 86-229 (694)
70 cd05804 StaR_like StaR_like; a 99.4 5E-11 1.1E-15 130.8 28.2 268 419-704 43-337 (355)
71 COG3063 PilF Tfp pilus assembl 99.4 3.2E-11 6.8E-16 121.3 22.6 202 420-676 36-243 (250)
72 KOG0553 TPR repeat-containing 99.4 2.7E-12 5.8E-17 133.5 15.1 163 516-748 82-250 (304)
73 cd05804 StaR_like StaR_like; a 99.4 1.1E-11 2.4E-16 136.0 20.4 175 510-705 1-179 (355)
74 PRK10370 formate-dependent nit 99.4 4.2E-12 9.1E-17 128.8 15.5 123 528-708 52-178 (198)
75 KOG1129 TPR repeat-containing 99.4 6.4E-12 1.4E-16 130.9 16.7 228 456-707 228-462 (478)
76 KOG2076 RNA polymerase III tra 99.4 5.5E-11 1.2E-15 137.7 25.4 256 453-708 141-483 (895)
77 PRK10747 putative protoheme IX 99.4 3.5E-10 7.6E-15 127.0 30.4 251 425-703 124-390 (398)
78 PRK10370 formate-dependent nit 99.4 2.4E-11 5.1E-16 123.4 18.6 122 498-677 56-181 (198)
79 TIGR02552 LcrH_SycD type III s 99.4 1.4E-11 3.1E-16 116.0 14.8 118 536-711 4-122 (135)
80 KOG0553 TPR repeat-containing 99.4 3.3E-12 7.1E-17 132.9 11.0 104 607-710 81-185 (304)
81 KOG4162 Predicted calmodulin-b 99.3 1.3E-10 2.9E-15 132.7 23.8 283 398-708 460-788 (799)
82 TIGR03302 OM_YfiO outer membra 99.3 3.6E-11 7.8E-16 124.5 17.4 166 498-671 50-234 (235)
83 PRK15179 Vi polysaccharide bio 99.3 6.9E-11 1.5E-15 139.9 19.3 145 511-679 82-227 (694)
84 TIGR02552 LcrH_SycD type III s 99.3 6.4E-11 1.4E-15 111.6 14.7 117 502-676 4-121 (135)
85 KOG1840 Kinesin light chain [C 99.2 8.6E-10 1.9E-14 125.4 22.1 231 419-702 199-478 (508)
86 KOG1127 TPR repeat-containing 99.2 7.5E-10 1.6E-14 128.9 21.6 296 419-715 492-892 (1238)
87 KOG1127 TPR repeat-containing 99.2 5.2E-10 1.1E-14 130.2 19.4 212 466-702 473-699 (1238)
88 PLN03218 maturation of RBCL 1; 99.2 4E-08 8.7E-13 121.6 36.6 284 398-711 453-758 (1060)
89 PLN03081 pentatricopeptide (PP 99.2 3.3E-08 7.2E-13 118.9 34.7 278 421-703 261-557 (697)
90 PRK10153 DNA-binding transcrip 99.2 4.7E-10 1E-14 129.2 17.0 144 551-712 342-491 (517)
91 KOG1128 Uncharacterized conser 99.2 5.8E-10 1.3E-14 126.9 17.2 212 424-670 403-617 (777)
92 COG2956 Predicted N-acetylgluc 99.2 6.8E-08 1.5E-12 101.5 30.6 285 425-738 41-349 (389)
93 KOG1840 Kinesin light chain [C 99.2 2.4E-09 5.1E-14 121.8 21.3 207 484-704 205-439 (508)
94 PLN03088 SGT1, suppressor of 99.1 6.3E-10 1.4E-14 123.0 15.6 112 518-687 5-117 (356)
95 KOG2003 TPR repeat-containing 99.1 9.7E-09 2.1E-13 110.9 23.8 259 424-707 424-693 (840)
96 PLN03218 maturation of RBCL 1; 99.1 6.1E-08 1.3E-12 120.1 34.0 274 420-719 438-731 (1060)
97 KOG1174 Anaphase-promoting com 99.1 6.4E-09 1.4E-13 111.7 20.2 181 398-581 316-504 (564)
98 PRK15363 pathogenicity island 99.1 2E-09 4.2E-14 103.8 14.7 110 548-715 35-147 (157)
99 PLN03088 SGT1, suppressor of 99.1 5.6E-10 1.2E-14 123.4 12.6 96 621-716 16-113 (356)
100 COG5010 TadD Flp pilus assembl 99.1 9.1E-09 2E-13 105.6 19.4 175 500-699 52-227 (257)
101 PLN03077 Protein ECB2; Provisi 99.1 3E-08 6.5E-13 122.1 27.8 250 420-702 425-719 (857)
102 PRK11906 transcriptional regul 99.1 1.6E-09 3.4E-14 119.8 14.8 154 552-723 259-424 (458)
103 KOG0495 HAT repeat protein [RN 99.1 2.7E-07 5.8E-12 104.1 32.0 289 401-721 569-867 (913)
104 PRK04841 transcriptional regul 99.1 4.4E-08 9.5E-13 121.1 28.6 269 419-708 452-765 (903)
105 PF13414 TPR_11: TPR repeat; P 99.1 4.8E-10 1.1E-14 93.3 7.6 67 639-705 2-69 (69)
106 PLN03081 pentatricopeptide (PP 99.0 5.3E-08 1.1E-12 117.2 27.9 193 498-721 276-476 (697)
107 PLN03077 Protein ECB2; Provisi 99.0 6.2E-08 1.4E-12 119.3 28.3 289 419-718 323-636 (857)
108 COG5010 TadD Flp pilus assembl 99.0 9.5E-09 2.1E-13 105.5 17.2 144 498-666 83-228 (257)
109 PF13414 TPR_11: TPR repeat; P 99.0 1.1E-09 2.3E-14 91.2 8.4 67 513-579 1-69 (69)
110 KOG4648 Uncharacterized conser 99.0 2.2E-10 4.9E-15 120.1 4.6 221 484-708 103-335 (536)
111 KOG1156 N-terminal acetyltrans 99.0 6.3E-08 1.4E-12 109.4 23.2 295 419-735 7-316 (700)
112 KOG2003 TPR repeat-containing 99.0 7.9E-08 1.7E-12 104.0 22.5 258 419-700 454-722 (840)
113 PRK14720 transcript cleavage f 99.0 6.2E-09 1.3E-13 124.6 15.7 155 507-703 23-178 (906)
114 KOG1156 N-terminal acetyltrans 99.0 3.3E-08 7.2E-13 111.6 20.4 235 461-717 17-262 (700)
115 PRK15363 pathogenicity island 99.0 7.6E-09 1.6E-13 99.8 13.3 107 506-670 25-133 (157)
116 PRK11906 transcriptional regul 99.0 1.9E-08 4.2E-13 111.3 18.3 114 563-700 319-433 (458)
117 PRK02603 photosystem I assembl 98.9 1.5E-08 3.3E-13 100.2 13.9 66 642-707 74-153 (172)
118 PF12569 NARP1: NMDA receptor- 98.9 7.5E-08 1.6E-12 110.7 21.4 199 497-708 20-262 (517)
119 CHL00033 ycf3 photosystem I as 98.9 2.1E-08 4.6E-13 98.8 14.3 121 531-706 15-152 (168)
120 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 3.8E-09 8.1E-14 116.8 9.8 101 634-740 69-174 (453)
121 COG4785 NlpI Lipoprotein NlpI, 98.9 3.6E-08 7.9E-13 98.3 15.7 198 485-711 65-275 (297)
122 COG2956 Predicted N-acetylgluc 98.9 7.9E-07 1.7E-11 93.6 26.2 204 377-581 65-282 (389)
123 COG3071 HemY Uncharacterized e 98.9 2.9E-06 6.2E-11 91.8 31.2 275 418-730 83-383 (400)
124 TIGR02795 tol_pal_ybgF tol-pal 98.9 2.3E-08 4.9E-13 91.2 13.3 69 640-708 39-110 (119)
125 TIGR02795 tol_pal_ybgF tol-pal 98.9 3.4E-08 7.4E-13 90.0 14.1 109 515-678 2-114 (119)
126 PF04733 Coatomer_E: Coatomer 98.9 2.4E-08 5.2E-13 107.2 15.1 247 430-707 12-269 (290)
127 PF13432 TPR_16: Tetratricopep 98.9 6.1E-09 1.3E-13 85.7 7.7 65 644-708 1-65 (65)
128 PRK10153 DNA-binding transcrip 98.9 3.1E-08 6.7E-13 114.3 15.5 124 498-680 359-493 (517)
129 KOG4555 TPR repeat-containing 98.9 4.1E-08 8.8E-13 90.7 12.8 84 498-581 60-148 (175)
130 PRK02603 photosystem I assembl 98.8 5.8E-08 1.3E-12 96.1 14.7 72 511-582 31-106 (172)
131 KOG1130 Predicted G-alpha GTPa 98.8 1.5E-08 3.3E-13 108.7 10.5 252 400-703 35-344 (639)
132 PRK14720 transcript cleavage f 98.8 3.3E-07 7.1E-12 110.1 22.3 253 419-706 31-309 (906)
133 COG0457 NrfG FOG: TPR repeat [ 98.8 1.3E-06 2.7E-11 84.7 22.7 196 498-719 76-278 (291)
134 KOG0511 Ankyrin repeat protein 98.8 1.4E-08 3E-13 107.6 8.9 142 220-365 295-444 (516)
135 KOG3060 Uncharacterized conser 98.8 8.1E-07 1.8E-11 90.9 20.6 186 509-718 46-239 (289)
136 CHL00033 ycf3 photosystem I as 98.8 1.4E-07 3.1E-12 92.9 15.0 84 498-581 16-105 (168)
137 KOG0495 HAT repeat protein [RN 98.8 1E-05 2.2E-10 91.7 30.5 190 498-712 601-791 (913)
138 KOG0543 FKBP-type peptidyl-pro 98.7 1.1E-07 2.3E-12 103.3 13.9 113 421-581 210-324 (397)
139 COG0457 NrfG FOG: TPR repeat [ 98.7 1E-05 2.2E-10 78.3 26.1 237 433-699 37-289 (291)
140 PRK04841 transcriptional regul 98.7 2.7E-06 5.8E-11 105.3 27.2 260 424-704 346-642 (903)
141 KOG4648 Uncharacterized conser 98.7 1.1E-08 2.4E-13 107.6 4.8 165 518-708 100-301 (536)
142 cd00189 TPR Tetratricopeptide 98.7 7.7E-08 1.7E-12 81.2 9.2 82 625-706 19-100 (100)
143 COG4783 Putative Zn-dependent 98.7 7.1E-07 1.5E-11 98.7 18.7 145 506-708 297-442 (484)
144 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 5.8E-08 1.3E-12 107.5 9.2 73 509-581 69-146 (453)
145 KOG1130 Predicted G-alpha GTPa 98.7 9.9E-08 2.2E-12 102.6 10.2 249 424-708 22-309 (639)
146 KOG2376 Signal recognition par 98.7 2.3E-06 5E-11 96.1 21.3 217 462-710 23-260 (652)
147 PF13432 TPR_16: Tetratricopep 98.7 9.7E-08 2.1E-12 78.5 8.0 63 519-581 1-64 (65)
148 KOG0543 FKBP-type peptidyl-pro 98.6 3.9E-07 8.5E-12 99.0 14.4 130 516-703 209-355 (397)
149 KOG4234 TPR repeat-containing 98.6 1.8E-07 3.8E-12 92.4 10.7 63 519-581 99-167 (271)
150 KOG4234 TPR repeat-containing 98.6 1.8E-07 4E-12 92.3 10.0 99 458-581 102-201 (271)
151 KOG3060 Uncharacterized conser 98.6 4.2E-06 9.1E-11 85.8 20.0 128 498-647 103-232 (289)
152 cd00189 TPR Tetratricopeptide 98.6 3.8E-07 8.3E-12 76.9 10.8 83 498-580 17-100 (100)
153 PF12569 NARP1: NMDA receptor- 98.6 9.5E-06 2.1E-10 93.5 25.3 259 425-699 10-287 (517)
154 PRK10803 tol-pal system protei 98.5 1.4E-06 2.9E-11 92.4 14.8 108 514-676 141-253 (263)
155 COG4783 Putative Zn-dependent 98.5 4.2E-06 9.1E-11 92.7 18.5 140 496-676 321-462 (484)
156 PF12895 Apc3: Anaphase-promot 98.5 1.5E-07 3.3E-12 81.7 5.8 75 625-700 8-84 (84)
157 PRK10866 outer membrane biogen 98.5 5.4E-06 1.2E-10 86.9 18.2 159 498-697 49-235 (243)
158 COG4235 Cytochrome c biogenesi 98.5 1.9E-06 4.1E-11 90.8 14.6 124 498-676 139-263 (287)
159 PF12688 TPR_5: Tetratrico pep 98.5 1.4E-06 3.1E-11 81.1 12.2 99 549-702 2-103 (120)
160 PRK10803 tol-pal system protei 98.5 2.1E-06 4.6E-11 90.9 14.3 108 547-709 141-252 (263)
161 PF09976 TPR_21: Tetratricopep 98.5 5E-06 1.1E-10 79.9 15.3 119 527-701 23-145 (145)
162 PF13371 TPR_9: Tetratricopept 98.4 9E-07 1.9E-11 74.3 8.2 68 647-714 2-70 (73)
163 COG3071 HemY Uncharacterized e 98.4 0.00027 5.8E-09 76.9 27.8 273 398-703 100-390 (400)
164 PF12688 TPR_5: Tetratrico pep 98.4 7.1E-06 1.5E-10 76.5 13.7 99 515-668 1-103 (120)
165 PF06552 TOM20_plant: Plant sp 98.4 1.1E-06 2.3E-11 86.2 8.4 94 625-719 10-124 (186)
166 PF14559 TPR_19: Tetratricopep 98.4 1.1E-06 2.3E-11 72.7 7.2 65 650-714 1-66 (68)
167 PF09976 TPR_21: Tetratricopep 98.4 7.1E-06 1.5E-10 78.9 13.9 77 498-575 65-145 (145)
168 KOG1128 Uncharacterized conser 98.4 8.3E-06 1.8E-10 93.7 16.3 86 621-706 499-585 (777)
169 PF12895 Apc3: Anaphase-promot 98.4 9E-07 2E-11 76.8 6.6 76 498-574 6-84 (84)
170 PRK10866 outer membrane biogen 98.3 3.8E-05 8.2E-10 80.6 19.7 196 513-734 30-238 (243)
171 PF14938 SNAP: Soluble NSF att 98.3 3.2E-06 7E-11 90.6 11.9 162 420-582 36-230 (282)
172 PF13371 TPR_9: Tetratricopept 98.3 1.8E-06 3.9E-11 72.4 7.9 60 522-581 2-62 (73)
173 PF13525 YfiO: Outer membrane 98.3 3.2E-05 7E-10 78.8 18.6 165 514-693 4-197 (203)
174 COG4235 Cytochrome c biogenesi 98.3 1.1E-05 2.3E-10 85.2 15.1 122 529-708 136-261 (287)
175 KOG4555 TPR repeat-containing 98.2 5.7E-06 1.2E-10 76.7 9.3 85 624-708 61-149 (175)
176 PF13424 TPR_12: Tetratricopep 98.2 1.1E-06 2.5E-11 74.8 4.1 68 637-704 2-76 (78)
177 PRK15331 chaperone protein Sic 98.2 2.1E-05 4.5E-10 76.5 13.1 110 548-716 37-146 (165)
178 PF06552 TOM20_plant: Plant sp 98.2 3.1E-06 6.8E-11 83.0 7.3 84 498-581 8-113 (186)
179 KOG4340 Uncharacterized conser 98.2 0.00023 5E-09 74.5 20.5 301 396-742 24-360 (459)
180 COG4785 NlpI Lipoprotein NlpI, 98.2 1.9E-05 4.1E-10 79.2 12.2 67 515-581 65-132 (297)
181 KOG1941 Acetylcholine receptor 98.2 7.1E-05 1.5E-09 80.0 16.8 144 516-707 123-279 (518)
182 KOG0783 Uncharacterized conser 98.2 2E-06 4.3E-11 98.9 5.5 68 215-284 556-635 (1267)
183 PF07707 BACK: BTB And C-termi 98.2 2.6E-06 5.6E-11 76.5 5.2 84 324-413 1-92 (103)
184 KOG0376 Serine-threonine phosp 98.1 1.5E-06 3.3E-11 96.1 3.9 84 498-581 21-105 (476)
185 PF14938 SNAP: Soluble NSF att 98.1 0.00012 2.6E-09 78.5 18.0 195 518-732 38-258 (282)
186 PRK15331 chaperone protein Sic 98.1 4.9E-05 1.1E-09 74.0 13.0 120 506-685 28-148 (165)
187 KOG2053 Mitochondrial inherita 98.1 0.001 2.2E-08 78.6 25.0 246 464-741 22-278 (932)
188 KOG2376 Signal recognition par 98.1 9.6E-05 2.1E-09 83.5 16.1 175 498-703 29-204 (652)
189 KOG3081 Vesicle coat complex C 98.1 0.00041 9E-09 71.9 19.4 166 512-703 105-270 (299)
190 PF13525 YfiO: Outer membrane 98.0 0.00033 7.2E-09 71.4 18.5 149 419-567 5-197 (203)
191 PF13424 TPR_12: Tetratricopep 98.0 6.5E-06 1.4E-10 70.1 4.8 67 512-578 2-76 (78)
192 KOG2047 mRNA splicing factor [ 98.0 0.0092 2E-07 68.5 30.6 295 401-743 232-583 (835)
193 PF13431 TPR_17: Tetratricopep 98.0 5.2E-06 1.1E-10 59.6 3.3 32 663-694 2-33 (34)
194 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 7.7E-05 1.7E-09 83.2 13.9 94 625-719 219-312 (395)
195 KOG2716 Polymerase delta-inter 98.0 3.3E-05 7.2E-10 79.1 10.1 97 220-319 7-106 (230)
196 KOG4642 Chaperone-dependent E3 98.0 1.9E-05 4.2E-10 80.2 8.0 81 498-578 27-108 (284)
197 KOG3785 Uncharacterized conser 98.0 0.00068 1.5E-08 72.5 19.5 255 424-689 62-331 (557)
198 KOG1308 Hsp70-interacting prot 98.0 2.2E-06 4.8E-11 91.1 0.9 83 498-580 131-214 (377)
199 KOG0376 Serine-threonine phosp 98.0 1.4E-05 3E-10 88.7 7.0 122 520-704 9-131 (476)
200 PF13512 TPR_18: Tetratricopep 97.9 0.00024 5.3E-09 67.7 13.9 67 515-581 10-80 (142)
201 COG4700 Uncharacterized protei 97.9 0.001 2.2E-08 65.7 17.6 167 497-689 72-244 (251)
202 PF04733 Coatomer_E: Coatomer 97.9 9.8E-05 2.1E-09 79.5 11.6 157 422-582 105-270 (290)
203 KOG4642 Chaperone-dependent E3 97.9 5.3E-05 1.2E-09 77.1 8.8 114 622-735 25-144 (284)
204 PF13431 TPR_17: Tetratricopep 97.8 1.5E-05 3.3E-10 57.2 3.4 33 504-536 2-34 (34)
205 KOG4340 Uncharacterized conser 97.8 0.00045 9.7E-09 72.4 15.5 177 498-702 27-206 (459)
206 KOG1987 Speckle-type POZ prote 97.8 1.1E-05 2.3E-10 87.0 3.5 130 226-359 109-243 (297)
207 KOG1915 Cell cycle control pro 97.8 0.037 8.1E-07 61.7 30.1 302 400-707 192-540 (677)
208 PF14559 TPR_19: Tetratricopep 97.8 7.8E-05 1.7E-09 61.5 7.5 50 498-547 8-57 (68)
209 COG4700 Uncharacterized protei 97.8 0.0021 4.6E-08 63.5 18.1 83 498-580 106-192 (251)
210 KOG3785 Uncharacterized conser 97.8 0.0039 8.4E-08 66.9 21.3 259 430-726 33-335 (557)
211 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00046 9.9E-09 77.1 15.3 115 432-577 182-297 (395)
212 KOG2838 Uncharacterized conser 97.7 1.8E-05 3.9E-10 81.1 3.2 57 227-284 261-327 (401)
213 KOG1915 Cell cycle control pro 97.7 0.042 9E-07 61.3 29.1 235 441-703 310-585 (677)
214 PF02214 BTB_2: BTB/POZ domain 97.7 4.3E-05 9.2E-10 67.9 4.8 88 220-310 1-94 (94)
215 COG3898 Uncharacterized membra 97.7 0.12 2.6E-06 56.6 31.3 287 424-743 89-395 (531)
216 COG1729 Uncharacterized protei 97.7 0.00073 1.6E-08 70.7 14.3 109 551-714 144-255 (262)
217 KOG0545 Aryl-hydrocarbon recep 97.7 0.0004 8.6E-09 71.1 11.9 118 420-548 179-297 (329)
218 PF00515 TPR_1: Tetratricopept 97.7 6.7E-05 1.4E-09 53.3 4.5 34 674-707 1-34 (34)
219 KOG2047 mRNA splicing factor [ 97.6 0.032 6.8E-07 64.3 27.3 430 264-712 228-728 (835)
220 smart00875 BACK BTB And C-term 97.6 9.3E-05 2E-09 65.7 6.0 83 324-413 1-91 (101)
221 COG1729 Uncharacterized protei 97.6 0.00097 2.1E-08 69.8 13.8 106 518-678 144-253 (262)
222 PF13512 TPR_18: Tetratricopep 97.6 0.0015 3.2E-08 62.4 13.6 106 548-708 10-133 (142)
223 PF13428 TPR_14: Tetratricopep 97.5 0.00015 3.3E-09 55.0 5.1 43 640-682 1-43 (44)
224 PF00515 TPR_1: Tetratricopept 97.5 0.00019 4.2E-09 50.9 4.7 32 516-547 2-33 (34)
225 KOG1308 Hsp70-interacting prot 97.4 0.00015 3.2E-09 77.5 5.1 89 461-549 124-216 (377)
226 PF07719 TPR_2: Tetratricopept 97.4 0.00028 6.1E-09 49.8 4.3 33 674-706 1-33 (34)
227 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0012 2.6E-08 70.4 9.9 76 514-589 80-160 (390)
228 KOG0545 Aryl-hydrocarbon recep 97.3 0.0021 4.6E-08 65.9 11.1 117 453-581 180-297 (329)
229 KOG2796 Uncharacterized conser 97.3 0.01 2.2E-07 61.6 16.0 139 516-706 178-318 (366)
230 KOG3473 RNA polymerase II tran 97.2 0.0011 2.3E-08 58.1 7.2 81 220-303 19-112 (112)
231 PF07719 TPR_2: Tetratricopept 97.2 0.00063 1.4E-08 48.0 4.6 34 640-673 1-34 (34)
232 KOG0530 Protein farnesyltransf 97.2 0.028 6.2E-07 58.4 17.7 166 468-685 60-232 (318)
233 COG4105 ComL DNA uptake lipopr 97.1 0.037 8.1E-07 57.7 18.7 189 514-720 33-249 (254)
234 KOG0530 Protein farnesyltransf 97.1 0.11 2.4E-06 54.2 21.5 143 413-557 39-190 (318)
235 COG3898 Uncharacterized membra 97.1 0.48 1E-05 52.1 26.7 245 428-703 129-392 (531)
236 KOG1550 Extracellular protein 97.1 0.25 5.5E-06 58.2 27.3 264 419-707 244-542 (552)
237 KOG2838 Uncharacterized conser 97.0 0.00069 1.5E-08 69.8 4.9 63 220-284 133-197 (401)
238 COG4105 ComL DNA uptake lipopr 97.0 0.16 3.5E-06 53.1 21.5 184 419-674 34-237 (254)
239 COG3118 Thioredoxin domain-con 96.9 0.023 4.9E-07 60.3 14.7 158 520-701 139-299 (304)
240 KOG1070 rRNA processing protei 96.9 0.052 1.1E-06 67.2 19.1 225 499-730 1442-1693(1710)
241 KOG1941 Acetylcholine receptor 96.9 0.13 2.9E-06 55.7 20.1 259 418-695 82-383 (518)
242 KOG0551 Hsp90 co-chaperone CNS 96.8 0.0052 1.1E-07 65.7 9.5 102 549-704 82-183 (390)
243 PF13428 TPR_14: Tetratricopep 96.8 0.0028 6.2E-08 47.9 5.3 40 516-555 2-42 (44)
244 PF04184 ST7: ST7 protein; In 96.7 0.081 1.7E-06 59.8 18.0 58 517-574 261-321 (539)
245 PF11822 DUF3342: Domain of un 96.6 0.0029 6.3E-08 67.7 5.9 91 227-319 14-105 (317)
246 KOG1550 Extracellular protein 96.6 0.21 4.5E-06 58.9 22.0 287 425-740 218-538 (552)
247 PF13181 TPR_8: Tetratricopept 96.5 0.0035 7.6E-08 44.2 4.0 32 675-706 2-33 (34)
248 PF03704 BTAD: Bacterial trans 96.5 0.051 1.1E-06 51.9 13.3 62 641-702 63-124 (146)
249 KOG2471 TPR repeat-containing 96.5 0.1 2.2E-06 58.5 16.8 60 640-699 619-680 (696)
250 KOG2053 Mitochondrial inherita 96.5 0.011 2.4E-07 70.1 10.0 90 623-712 26-118 (932)
251 PF13181 TPR_8: Tetratricopept 96.4 0.0049 1.1E-07 43.4 3.9 34 640-673 1-34 (34)
252 KOG1070 rRNA processing protei 96.3 0.65 1.4E-05 58.1 23.4 227 439-689 1444-1684(1710)
253 KOG1586 Protein required for f 96.3 0.27 5.8E-06 50.7 17.2 121 462-582 84-229 (288)
254 PF03704 BTAD: Bacterial trans 96.3 0.038 8.3E-07 52.7 10.7 62 515-576 62-124 (146)
255 KOG1665 AFH1-interacting prote 96.2 0.012 2.7E-07 59.3 7.1 90 220-312 11-105 (302)
256 KOG2796 Uncharacterized conser 96.2 0.39 8.4E-06 50.3 17.7 127 422-548 180-319 (366)
257 PF04184 ST7: ST7 protein; In 96.1 0.25 5.4E-06 56.0 17.5 159 527-720 180-347 (539)
258 KOG3617 WD40 and TPR repeat-co 96.1 0.26 5.7E-06 58.3 17.9 251 427-731 808-1083(1416)
259 KOG2610 Uncharacterized conser 96.1 0.18 4E-06 54.2 15.4 84 498-581 120-208 (491)
260 smart00028 TPR Tetratricopepti 96.0 0.0092 2E-07 39.7 3.8 32 675-706 2-33 (34)
261 smart00512 Skp1 Found in Skp1 96.0 0.027 5.8E-07 51.1 7.8 81 220-303 4-104 (104)
262 PRK10941 hypothetical protein; 96.0 0.043 9.3E-07 58.4 10.3 65 517-581 183-248 (269)
263 KOG1310 WD40 repeat protein [G 95.9 0.0094 2E-07 66.9 5.0 107 563-693 389-495 (758)
264 PF13281 DUF4071: Domain of un 95.8 0.67 1.4E-05 51.5 19.1 39 646-684 311-349 (374)
265 PF13174 TPR_6: Tetratricopept 95.8 0.011 2.5E-07 41.0 3.6 32 675-706 1-32 (33)
266 KOG2714 SETA binding protein S 95.8 0.034 7.3E-07 61.3 8.7 90 220-313 13-110 (465)
267 PF12968 DUF3856: Domain of Un 95.8 0.27 5.9E-06 45.5 13.1 108 515-669 7-129 (144)
268 PF02259 FAT: FAT domain; Int 95.8 0.86 1.9E-05 49.6 20.1 171 511-706 142-341 (352)
269 PRK10941 hypothetical protein; 95.8 0.035 7.5E-07 59.1 8.6 59 625-683 200-258 (269)
270 PF14853 Fis1_TPR_C: Fis1 C-te 95.8 0.029 6.3E-07 44.5 6.0 46 549-600 2-47 (53)
271 COG0790 FOG: TPR repeat, SEL1 95.7 3.4 7.4E-05 44.0 24.1 158 498-713 94-276 (292)
272 PF02259 FAT: FAT domain; Int 95.7 1.5 3.3E-05 47.7 21.4 197 515-717 29-302 (352)
273 COG4941 Predicted RNA polymera 95.6 0.32 6.9E-06 52.4 14.9 192 498-715 213-407 (415)
274 KOG2610 Uncharacterized conser 95.6 0.35 7.5E-06 52.2 14.9 159 423-581 107-282 (491)
275 KOG2300 Uncharacterized conser 95.5 5.6 0.00012 45.2 24.5 191 433-679 289-524 (629)
276 PF13281 DUF4071: Domain of un 95.5 0.73 1.6E-05 51.2 17.8 203 518-750 144-367 (374)
277 KOG3081 Vesicle coat complex C 95.4 0.35 7.5E-06 50.8 13.9 156 423-581 112-275 (299)
278 PF10300 DUF3808: Protein of u 95.4 0.36 7.7E-06 55.7 15.7 113 625-737 252-373 (468)
279 smart00028 TPR Tetratricopepti 95.4 0.025 5.5E-07 37.4 4.0 34 640-673 1-34 (34)
280 PF12968 DUF3856: Domain of Un 95.3 0.11 2.3E-06 48.1 8.7 92 429-543 19-128 (144)
281 PF10300 DUF3808: Protein of u 95.3 0.18 4E-06 58.1 13.0 82 498-579 250-336 (468)
282 COG2976 Uncharacterized protei 95.3 0.69 1.5E-05 46.6 15.1 63 517-581 128-192 (207)
283 PF13176 TPR_7: Tetratricopept 95.3 0.026 5.6E-07 40.8 3.9 29 676-704 1-29 (36)
284 PF04781 DUF627: Protein of un 95.1 0.071 1.5E-06 48.7 7.1 89 617-705 7-110 (111)
285 KOG1724 SCF ubiquitin ligase, 95.1 0.097 2.1E-06 51.3 8.6 101 225-328 13-139 (162)
286 PF14561 TPR_20: Tetratricopep 95.1 0.17 3.7E-06 44.7 9.4 77 625-701 7-85 (90)
287 KOG3617 WD40 and TPR repeat-co 95.1 0.73 1.6E-05 54.8 16.7 55 643-702 941-995 (1416)
288 PF05843 Suf: Suppressor of fo 94.9 0.5 1.1E-05 50.7 14.3 84 625-708 55-141 (280)
289 PF13176 TPR_7: Tetratricopept 94.9 0.042 9.1E-07 39.7 4.1 29 517-545 1-29 (36)
290 KOG0529 Protein geranylgeranyl 94.8 2.1 4.5E-05 47.6 18.5 174 531-728 91-285 (421)
291 KOG1585 Protein required for f 94.7 0.88 1.9E-05 47.3 14.2 197 461-696 41-249 (308)
292 KOG1310 WD40 repeat protein [G 94.7 0.15 3.3E-06 57.6 9.5 89 625-713 393-484 (758)
293 KOG3824 Huntingtin interacting 94.6 0.083 1.8E-06 56.1 6.9 72 645-716 121-193 (472)
294 PF14561 TPR_20: Tetratricopep 94.5 0.14 3.1E-06 45.2 7.3 77 499-575 6-85 (90)
295 COG2909 MalT ATP-dependent tra 94.5 8.5 0.00018 46.8 23.7 204 485-703 422-647 (894)
296 PF13174 TPR_6: Tetratricopept 94.4 0.061 1.3E-06 37.2 3.8 33 641-673 1-33 (33)
297 PF13374 TPR_10: Tetratricopep 94.2 0.071 1.5E-06 38.9 4.1 32 674-705 2-33 (42)
298 COG3118 Thioredoxin domain-con 94.2 0.67 1.4E-05 49.5 12.6 123 425-547 140-268 (304)
299 PF10345 Cohesin_load: Cohesin 94.1 17 0.00037 43.5 30.0 279 411-708 51-446 (608)
300 KOG1586 Protein required for f 94.0 1.8 3.8E-05 44.9 14.6 177 521-715 40-240 (288)
301 PF05843 Suf: Suppressor of fo 94.0 0.28 6.1E-06 52.6 9.7 128 610-737 4-136 (280)
302 COG2976 Uncharacterized protei 93.9 1.2 2.6E-05 44.9 12.9 98 519-675 93-194 (207)
303 PF14853 Fis1_TPR_C: Fis1 C-te 93.7 0.2 4.3E-06 39.8 5.8 33 676-708 3-35 (53)
304 PF08631 SPO22: Meiosis protei 93.6 12 0.00025 40.1 24.2 99 419-544 35-150 (278)
305 KOG3616 Selective LIM binding 93.3 2.9 6.4E-05 49.2 16.4 65 650-714 960-1046(1636)
306 PF08424 NRDE-2: NRDE-2, neces 93.2 1.3 2.8E-05 48.6 13.4 29 642-670 156-184 (321)
307 PF03931 Skp1_POZ: Skp1 family 93.2 0.42 9.1E-06 39.1 7.3 56 220-280 3-59 (62)
308 COG0790 FOG: TPR repeat, SEL1 93.1 3.7 7.9E-05 43.8 16.5 144 434-581 92-270 (292)
309 COG3914 Spy Predicted O-linked 93.1 1.2 2.5E-05 51.6 12.8 126 534-685 50-185 (620)
310 COG4976 Predicted methyltransf 92.9 0.33 7.2E-06 49.8 7.5 49 626-674 15-63 (287)
311 KOG3824 Huntingtin interacting 92.9 0.21 4.6E-06 53.1 6.2 83 530-650 112-194 (472)
312 KOG4507 Uncharacterized conser 92.8 0.26 5.6E-06 56.4 7.2 93 616-708 616-710 (886)
313 PF11207 DUF2989: Protein of u 92.3 1.6 3.4E-05 44.3 11.4 82 612-694 112-198 (203)
314 COG4976 Predicted methyltransf 92.2 0.21 4.6E-06 51.2 5.0 58 524-581 4-62 (287)
315 COG3914 Spy Predicted O-linked 92.0 2.9 6.3E-05 48.4 14.2 85 498-582 84-176 (620)
316 PF08424 NRDE-2: NRDE-2, neces 91.7 4.4 9.5E-05 44.4 15.1 190 500-749 4-216 (321)
317 KOG4507 Uncharacterized conser 91.4 0.78 1.7E-05 52.7 8.8 120 539-714 203-324 (886)
318 KOG1585 Protein required for f 91.3 7 0.00015 40.9 14.7 166 413-578 25-220 (308)
319 COG4941 Predicted RNA polymera 91.2 2.7 5.8E-05 45.6 12.1 127 531-682 272-407 (415)
320 PF10345 Cohesin_load: Cohesin 91.2 40 0.00086 40.3 24.7 178 514-703 403-606 (608)
321 COG2912 Uncharacterized conser 91.2 0.64 1.4E-05 49.2 7.4 58 626-683 201-258 (269)
322 PF07079 DUF1347: Protein of u 90.9 34 0.00073 39.0 22.7 69 649-718 471-539 (549)
323 PF13374 TPR_10: Tetratricopep 90.7 0.44 9.6E-06 34.6 4.3 30 515-544 2-31 (42)
324 KOG0985 Vesicle coat protein c 90.6 19 0.0004 44.6 19.3 184 514-713 1103-1318(1666)
325 PF07721 TPR_4: Tetratricopept 90.6 0.32 7E-06 32.4 3.1 25 675-699 2-26 (26)
326 PF12862 Apc5: Anaphase-promot 90.3 0.84 1.8E-05 40.5 6.5 57 651-707 9-74 (94)
327 PF04781 DUF627: Protein of un 90.2 1.6 3.5E-05 40.0 8.2 27 458-484 3-29 (111)
328 PF09613 HrpB1_HrpK: Bacterial 90.0 7.3 0.00016 38.2 13.1 70 626-697 30-99 (160)
329 KOG2471 TPR repeat-containing 89.7 2.2 4.9E-05 48.2 10.4 139 516-708 209-369 (696)
330 PF09613 HrpB1_HrpK: Bacterial 89.6 2.9 6.4E-05 40.9 10.0 65 644-708 14-78 (160)
331 KOG1778 CREB binding protein/P 89.5 0.18 3.8E-06 54.8 1.7 140 220-363 29-170 (319)
332 PF10579 Rapsyn_N: Rapsyn N-te 89.5 1.2 2.5E-05 38.4 6.2 64 642-705 8-74 (80)
333 PF04910 Tcf25: Transcriptiona 88.7 11 0.00023 42.2 15.1 157 506-679 31-232 (360)
334 COG2912 Uncharacterized conser 88.5 1.6 3.4E-05 46.3 7.8 69 646-714 187-256 (269)
335 PF10516 SHNi-TPR: SHNi-TPR; 88.5 0.72 1.6E-05 34.0 3.8 29 516-544 2-30 (38)
336 KOG3364 Membrane protein invol 88.4 2.9 6.4E-05 39.7 8.7 80 515-600 32-117 (149)
337 COG3629 DnrI DNA-binding trans 88.2 3.4 7.4E-05 44.2 10.2 90 639-742 152-241 (280)
338 KOG2715 Uncharacterized conser 87.8 2.5 5.4E-05 41.2 8.0 103 213-318 15-122 (210)
339 COG5201 SKP1 SCF ubiquitin lig 87.4 3 6.5E-05 38.9 7.9 96 220-320 4-124 (158)
340 PF10516 SHNi-TPR: SHNi-TPR; 87.3 0.77 1.7E-05 33.8 3.4 32 674-705 1-32 (38)
341 PF01466 Skp1: Skp1 family, di 87.3 1.5 3.3E-05 37.6 5.8 50 286-335 11-62 (78)
342 KOG0511 Ankyrin repeat protein 86.1 1.3 2.9E-05 48.3 5.8 85 220-309 152-237 (516)
343 KOG0546 HSP90 co-chaperone CPR 86.1 0.64 1.4E-05 50.6 3.4 59 626-684 295-353 (372)
344 KOG2396 HAT (Half-A-TPR) repea 85.9 5.2 0.00011 45.6 10.4 83 626-708 91-174 (568)
345 COG4649 Uncharacterized protei 85.3 42 0.00091 33.6 15.0 54 526-579 69-125 (221)
346 PF07721 TPR_4: Tetratricopept 84.8 1.2 2.6E-05 29.6 3.1 26 640-665 1-26 (26)
347 PRK15180 Vi polysaccharide bio 84.6 5.3 0.00011 45.2 9.5 165 527-718 301-469 (831)
348 KOG0529 Protein geranylgeranyl 84.3 19 0.00041 40.4 13.6 176 498-720 46-241 (421)
349 PF09986 DUF2225: Uncharacteri 83.9 23 0.00049 36.6 13.5 96 528-674 90-199 (214)
350 TIGR02561 HrpB1_HrpK type III 83.5 5 0.00011 38.8 7.8 64 626-689 30-93 (153)
351 PF15015 NYD-SP12_N: Spermatog 82.6 7.4 0.00016 43.5 9.6 103 426-542 183-289 (569)
352 KOG2300 Uncharacterized conser 82.3 78 0.0017 36.5 17.4 139 419-580 367-517 (629)
353 TIGR02561 HrpB1_HrpK type III 82.2 10 0.00023 36.7 9.4 56 653-708 23-78 (153)
354 KOG3616 Selective LIM binding 81.9 71 0.0015 38.4 17.4 20 77-96 246-265 (1636)
355 PF08631 SPO22: Meiosis protei 81.9 69 0.0015 34.1 16.9 165 526-702 4-185 (278)
356 PF00244 14-3-3: 14-3-3 protei 81.9 33 0.00072 35.9 14.0 194 518-738 4-225 (236)
357 PF10373 EST1_DNA_bind: Est1 D 81.8 4.3 9.4E-05 42.7 7.6 61 659-719 1-62 (278)
358 KOG3364 Membrane protein invol 80.6 7.2 0.00016 37.2 7.5 76 639-714 31-112 (149)
359 PRK13184 pknD serine/threonine 79.3 82 0.0018 39.6 18.2 94 485-582 482-586 (932)
360 KOG3783 Uncharacterized conser 78.7 1.4E+02 0.003 34.9 19.1 187 517-707 305-524 (546)
361 KOG0546 HSP90 co-chaperone CPR 78.7 1.4 3.1E-05 48.0 2.6 50 498-547 292-341 (372)
362 COG2909 MalT ATP-dependent tra 77.9 1.9E+02 0.004 35.9 27.7 221 396-616 429-687 (894)
363 PF12862 Apc5: Anaphase-promot 77.8 11 0.00025 33.2 7.7 56 525-580 8-73 (94)
364 KOG0686 COP9 signalosome, subu 77.1 38 0.00082 38.0 12.8 101 420-542 151-256 (466)
365 PF04910 Tcf25: Transcriptiona 76.9 72 0.0016 35.6 15.5 165 542-715 33-234 (360)
366 PF10579 Rapsyn_N: Rapsyn N-te 76.7 14 0.00031 31.8 7.5 59 515-573 6-68 (80)
367 PF10602 RPN7: 26S proteasome 76.7 49 0.0011 32.9 12.8 99 420-543 37-141 (177)
368 PF07720 TPR_3: Tetratricopept 76.2 6.8 0.00015 28.5 4.7 31 550-580 3-35 (36)
369 PF10373 EST1_DNA_bind: Est1 D 75.9 9.4 0.0002 40.1 7.9 61 500-560 1-62 (278)
370 KOG3840 Uncharaterized conserv 75.4 4.1 8.8E-05 43.4 4.7 83 220-303 98-184 (438)
371 KOG0985 Vesicle coat protein c 74.8 32 0.00069 42.7 12.2 153 421-582 1106-1313(1666)
372 KOG0890 Protein kinase of the 74.8 3.4E+02 0.0074 37.3 24.7 313 424-740 1388-1784(2382)
373 PF09986 DUF2225: Uncharacteri 73.8 28 0.00062 35.8 10.5 76 640-715 118-208 (214)
374 PF11207 DUF2989: Protein of u 73.5 1.1E+02 0.0024 31.3 14.2 87 478-567 104-197 (203)
375 COG4455 ImpE Protein of avirul 73.2 32 0.00068 35.7 10.2 96 649-744 10-119 (273)
376 COG3629 DnrI DNA-binding trans 72.7 22 0.00047 38.2 9.5 64 514-577 152-216 (280)
377 PF10255 Paf67: RNA polymerase 72.1 5.1 0.00011 45.2 4.8 107 452-580 123-231 (404)
378 KOG2396 HAT (Half-A-TPR) repea 72.1 8.5 0.00018 44.0 6.5 51 626-676 125-176 (568)
379 KOG3807 Predicted membrane pro 71.6 1.2E+02 0.0025 33.4 14.4 106 555-674 282-396 (556)
380 smart00101 14_3_3 14-3-3 homol 69.7 1.5E+02 0.0033 31.2 15.4 189 518-738 4-227 (244)
381 COG4455 ImpE Protein of avirul 69.0 12 0.00026 38.6 6.3 60 523-582 9-69 (273)
382 COG4649 Uncharacterized protei 68.9 81 0.0018 31.6 11.6 126 429-557 68-209 (221)
383 KOG4151 Myosin assembly protei 68.4 14 0.00031 44.3 7.6 80 502-581 74-160 (748)
384 KOG0276 Vesicle coat complex C 68.1 74 0.0016 37.5 12.8 174 503-739 601-777 (794)
385 PF07720 TPR_3: Tetratricopept 67.5 13 0.00028 27.0 4.5 30 676-705 3-34 (36)
386 KOG1839 Uncharacterized protei 67.2 59 0.0013 41.5 12.8 161 518-703 935-1121(1236)
387 PF04190 DUF410: Protein of un 67.2 1.8E+02 0.0038 30.9 16.1 138 506-656 81-244 (260)
388 PRK13184 pknD serine/threonine 66.8 21 0.00045 44.7 8.9 61 626-687 539-599 (932)
389 COG3014 Uncharacterized protei 66.8 2E+02 0.0043 31.9 15.0 66 507-581 114-182 (449)
390 KOG2723 Uncharacterized conser 65.9 14 0.00031 38.1 6.2 96 216-315 6-107 (221)
391 cd02682 MIT_AAA_Arch MIT: doma 61.2 21 0.00046 30.5 5.4 49 643-691 9-64 (75)
392 KOG1839 Uncharacterized protei 60.9 25 0.00055 44.6 8.1 123 422-545 935-1087(1236)
393 PF15015 NYD-SP12_N: Spermatog 60.6 30 0.00065 38.9 7.7 43 625-667 247-289 (569)
394 KOG4814 Uncharacterized conser 59.5 95 0.0021 36.9 11.7 100 552-703 358-457 (872)
395 PF10602 RPN7: 26S proteasome 58.3 1.1E+02 0.0023 30.5 10.9 97 452-575 37-140 (177)
396 PF11822 DUF3342: Domain of un 56.4 3.6 7.9E-05 44.5 -0.0 42 317-359 71-112 (317)
397 PRK15180 Vi polysaccharide bio 55.7 50 0.0011 37.8 8.5 135 560-718 301-445 (831)
398 PRK11619 lytic murein transgly 53.9 4.8E+02 0.01 31.6 23.3 238 471-710 82-381 (644)
399 KOG2581 26S proteasome regulat 52.7 1.2E+02 0.0026 34.2 10.7 182 515-720 124-331 (493)
400 KOG2114 Vacuolar assembly/sort 52.6 70 0.0015 39.0 9.5 128 557-698 377-514 (933)
401 KOG2041 WD40 repeat protein [G 52.5 5.1E+02 0.011 31.5 20.8 143 413-574 790-936 (1189)
402 PF12854 PPR_1: PPR repeat 52.4 31 0.00067 24.4 4.3 30 544-573 3-32 (34)
403 PHA02537 M terminase endonucle 52.3 25 0.00054 36.7 5.3 34 641-674 170-212 (230)
404 KOG2114 Vacuolar assembly/sort 52.1 23 0.00051 42.9 5.6 77 649-736 343-422 (933)
405 COG5191 Uncharacterized conser 51.9 14 0.00031 39.9 3.5 50 628-677 129-179 (435)
406 COG3947 Response regulator con 51.4 43 0.00092 36.1 6.8 57 519-575 283-340 (361)
407 PRK11619 lytic murein transgly 51.3 5.2E+02 0.011 31.3 21.7 172 524-728 321-513 (644)
408 KOG3807 Predicted membrane pro 49.9 1.4E+02 0.0031 32.8 10.4 104 426-547 282-394 (556)
409 PHA02537 M terminase endonucle 49.3 1.3E+02 0.0028 31.5 9.9 35 560-601 190-224 (230)
410 COG5191 Uncharacterized conser 49.0 28 0.00061 37.7 5.1 85 628-712 95-184 (435)
411 KOG1538 Uncharacterized conser 48.9 2.2E+02 0.0047 34.1 12.3 71 504-581 736-806 (1081)
412 cd02682 MIT_AAA_Arch MIT: doma 47.9 24 0.00053 30.1 3.6 27 517-543 8-34 (75)
413 PF11846 DUF3366: Domain of un 47.7 39 0.00084 33.8 5.8 51 530-580 126-176 (193)
414 PF11846 DUF3366: Domain of un 46.4 54 0.0012 32.8 6.7 45 626-671 131-175 (193)
415 TIGR03504 FimV_Cterm FimV C-te 43.7 70 0.0015 24.4 5.2 25 519-543 3-27 (44)
416 KOG2041 WD40 repeat protein [G 42.0 2.4E+02 0.0052 34.1 11.4 61 639-699 795-877 (1189)
417 PF00651 BTB: BTB/POZ domain; 41.3 29 0.00063 30.7 3.4 30 321-350 81-110 (111)
418 TIGR02710 CRISPR-associated pr 39.2 1.3E+02 0.0027 33.9 8.6 151 556-726 138-298 (380)
419 KOG4814 Uncharacterized conser 38.6 1E+02 0.0022 36.7 7.8 88 645-735 359-455 (872)
420 PF14929 TAF1_subA: TAF RNA Po 38.5 7.2E+02 0.016 29.5 14.9 85 653-739 271-372 (547)
421 cd02677 MIT_SNX15 MIT: domain 38.5 33 0.00071 29.3 3.0 15 688-702 20-34 (75)
422 PF10255 Paf67: RNA polymerase 37.0 61 0.0013 36.7 5.7 60 517-576 124-192 (404)
423 KOG4151 Myosin assembly protei 36.7 1E+02 0.0022 37.5 7.6 116 532-677 44-164 (748)
424 KOG4521 Nuclear pore complex, 35.6 9.9E+02 0.021 30.9 15.6 128 422-565 923-1071(1480)
425 TIGR03504 FimV_Cterm FimV C-te 35.3 72 0.0016 24.3 4.1 30 678-708 3-32 (44)
426 PF05053 Menin: Menin; InterP 34.9 1.1E+02 0.0023 36.0 7.2 44 500-543 298-346 (618)
427 KOG4279 Serine/threonine prote 34.8 1.8E+02 0.0039 35.4 9.0 144 529-686 257-412 (1226)
428 KOG3783 Uncharacterized conser 34.8 8.2E+02 0.018 28.8 18.6 71 511-581 444-524 (546)
429 PF13041 PPR_2: PPR repeat fam 34.4 1.6E+02 0.0034 22.2 6.1 38 514-551 2-41 (50)
430 COG5536 BET4 Protein prenyltra 33.5 4.5E+02 0.0097 28.4 10.9 57 630-686 174-239 (328)
431 PF04212 MIT: MIT (microtubule 33.5 75 0.0016 26.2 4.4 26 518-543 8-33 (69)
432 PF09670 Cas_Cas02710: CRISPR- 33.1 2.6E+02 0.0056 31.5 10.0 62 642-703 133-198 (379)
433 PF04212 MIT: MIT (microtubule 33.0 72 0.0016 26.3 4.2 25 644-668 9-33 (69)
434 PF13041 PPR_2: PPR repeat fam 32.9 1.2E+02 0.0025 23.0 5.2 36 676-711 5-42 (50)
435 cd02679 MIT_spastin MIT: domai 32.9 57 0.0012 28.2 3.6 23 646-668 14-36 (79)
436 PF12739 TRAPPC-Trs85: ER-Golg 32.7 6.7E+02 0.015 28.4 13.4 105 511-616 203-329 (414)
437 KOG2075 Topoisomerase TOP1-int 32.4 45 0.00098 38.1 3.7 44 318-365 185-228 (521)
438 PF09670 Cas_Cas02710: CRISPR- 32.3 2.5E+02 0.0053 31.6 9.7 22 558-579 251-272 (379)
439 PF12854 PPR_1: PPR repeat 31.9 86 0.0019 22.1 3.9 27 514-540 6-32 (34)
440 PF13934 ELYS: Nuclear pore co 31.3 6.1E+02 0.013 26.2 14.2 157 519-743 45-218 (226)
441 PF08311 Mad3_BUB1_I: Mad3/BUB 30.9 2.2E+02 0.0047 26.7 7.6 76 626-701 46-126 (126)
442 KOG2422 Uncharacterized conser 30.8 9.9E+02 0.021 28.5 16.4 149 432-580 251-451 (665)
443 PF14863 Alkyl_sulf_dimr: Alky 30.8 2.3E+02 0.0049 27.3 7.8 30 552-581 74-103 (141)
444 KOG1538 Uncharacterized conser 30.6 2.2E+02 0.0048 34.0 8.8 47 653-702 786-832 (1081)
445 KOG1938 Protein with predicted 30.5 3.7E+02 0.008 33.7 11.0 97 648-745 324-441 (960)
446 cd02656 MIT MIT: domain contai 30.0 71 0.0015 26.8 3.8 32 656-702 3-34 (75)
447 cd09248 BRO1_Rhophilin_1 Prote 29.9 6E+02 0.013 28.7 12.0 18 688-705 299-316 (384)
448 KOG1463 26S proteasome regulat 29.7 8.2E+02 0.018 27.3 14.2 175 519-712 132-325 (411)
449 smart00671 SEL1 Sel1-like repe 29.4 1E+02 0.0022 21.1 4.0 29 675-703 2-34 (36)
450 PF05053 Menin: Menin; InterP 28.4 3.1E+02 0.0068 32.3 9.5 95 625-733 298-416 (618)
451 cd02681 MIT_calpain7_1 MIT: do 28.3 71 0.0015 27.4 3.4 27 643-669 9-35 (76)
452 PF01239 PPTA: Protein prenylt 27.7 1.4E+02 0.0031 20.3 4.3 25 503-527 5-29 (31)
453 cd02679 MIT_spastin MIT: domai 27.3 91 0.002 27.0 3.9 33 530-576 4-36 (79)
454 PF14863 Alkyl_sulf_dimr: Alky 27.0 1.5E+02 0.0033 28.5 5.9 55 638-692 68-122 (141)
455 PF04190 DUF410: Protein of un 26.9 7.7E+02 0.017 26.0 14.8 62 638-699 88-166 (260)
456 PF08238 Sel1: Sel1 repeat; I 26.7 1.1E+02 0.0023 21.5 3.8 30 674-703 1-37 (39)
457 KOG0890 Protein kinase of the 26.7 7.5E+02 0.016 34.3 13.4 70 510-580 1665-1735(2382)
458 cd02683 MIT_1 MIT: domain cont 26.1 97 0.0021 26.5 3.9 25 643-667 9-33 (77)
459 KOG1464 COP9 signalosome, subu 26.0 1.4E+02 0.0029 32.1 5.6 75 653-728 204-293 (440)
460 PF09797 NatB_MDM20: N-acetylt 25.8 1.2E+02 0.0025 33.8 5.7 40 625-664 202-241 (365)
461 PF07707 BACK: BTB And C-termi 25.4 88 0.0019 27.3 3.8 28 292-319 2-29 (103)
462 PF04053 Coatomer_WDAD: Coatom 25.1 5E+02 0.011 29.9 10.6 112 549-700 262-373 (443)
463 PHA03098 kelch-like protein; P 24.9 76 0.0017 37.0 4.2 34 286-319 105-138 (534)
464 KOG4350 Uncharacterized conser 24.7 61 0.0013 36.2 2.9 58 258-317 107-176 (620)
465 smart00875 BACK BTB And C-term 24.6 2E+02 0.0042 24.6 5.9 28 292-319 2-29 (101)
466 KOG4682 Uncharacterized conser 24.6 1.1E+02 0.0023 34.5 4.8 40 286-325 170-209 (488)
467 KOG1464 COP9 signalosome, subu 24.2 1.8E+02 0.0039 31.2 6.1 50 653-702 40-93 (440)
468 KOG4014 Uncharacterized conser 24.1 7.8E+02 0.017 25.1 13.5 171 516-720 35-215 (248)
469 KOG2422 Uncharacterized conser 23.8 2.6E+02 0.0057 33.0 7.8 64 645-708 347-417 (665)
470 smart00386 HAT HAT (Half-A-TPR 23.8 1.5E+02 0.0032 19.4 3.9 22 655-676 2-23 (33)
471 COG3947 Response regulator con 23.7 2.2E+02 0.0048 30.9 6.7 57 643-699 282-338 (361)
472 PF13226 DUF4034: Domain of un 23.7 9.4E+02 0.02 25.9 11.6 129 459-605 8-150 (277)
473 KOG2997 F-box protein FBX9 [Ge 23.7 1.2E+02 0.0026 33.2 4.8 35 677-711 22-57 (366)
474 KOG4390 Voltage-gated A-type K 23.3 2.5E+02 0.0054 31.4 7.2 85 220-311 42-132 (632)
475 PF07079 DUF1347: Protein of u 23.3 1.2E+03 0.026 27.1 19.8 50 524-573 471-520 (549)
476 cd02681 MIT_calpain7_1 MIT: do 23.0 1.4E+02 0.003 25.6 4.2 25 519-543 10-34 (76)
477 PF02064 MAS20: MAS20 protein 22.2 1.6E+02 0.0035 27.6 4.9 32 519-550 67-98 (121)
478 KOG3690 Angiotensin I-converti 21.9 87 0.0019 36.9 3.6 42 105-146 518-580 (646)
479 PF01466 Skp1: Skp1 family, di 21.7 1.6E+02 0.0034 25.1 4.4 50 311-364 6-55 (78)
480 KOG2581 26S proteasome regulat 21.6 4.8E+02 0.01 29.7 9.0 28 103-130 41-68 (493)
481 cd02683 MIT_1 MIT: domain cont 21.4 1.5E+02 0.0032 25.4 4.1 24 519-542 10-33 (77)
482 cd02678 MIT_VPS4 MIT: domain c 21.3 1.4E+02 0.0031 25.1 4.1 30 419-448 6-35 (75)
483 PF00244 14-3-3: 14-3-3 protei 21.1 9.4E+02 0.02 25.0 12.0 36 635-670 160-199 (236)
484 COG0497 RecN ATPase involved i 20.9 1.5E+03 0.031 27.1 17.2 79 498-576 248-332 (557)
485 PF03745 DUF309: Domain of unk 20.6 2.3E+02 0.005 23.1 5.0 37 680-716 5-41 (62)
486 KOG1914 mRNA cleavage and poly 20.2 1.5E+03 0.032 26.9 30.4 235 484-736 256-541 (656)
487 PF07219 HemY_N: HemY protein 20.1 2.9E+02 0.0063 25.0 6.1 43 674-716 59-102 (108)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-33 Score=308.31 Aligned_cols=297 Identities=16% Similarity=0.140 Sum_probs=263.9
Q ss_pred HHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhh--
Q 004426 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL-- 493 (754)
Q Consensus 418 ka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~-- 493 (754)
.+++|-+||++.-..|+..+|+..|++|++++| .++++++|+|+-..+.++.|+..|.+|+..+|+.+.++.+.+.
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iY 296 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIY 296 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEE
Confidence 467899999999999999999999999999976 4689999999999999999999999999999998888877753
Q ss_pred cCCh--hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 004426 494 YNLG--REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRD 570 (754)
Q Consensus 494 y~~g--~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d 570 (754)
|.+| +-|+..|.+|++++|++..||.|+|+++.+.|+..||...|++||.+.|+ ++..+++|+++.++|.+++|++.
T Consensus 297 yeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~l 376 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRL 376 (966)
T ss_pred eccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHH
Confidence 3333 88999999999999999999999999999999999999999999999996 89999999999999999999999
Q ss_pred HHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHH
Q 004426 571 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL 650 (754)
Q Consensus 571 ~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L 650 (754)
|.+|++..|.+ .++.+.++.+...+...++| +.+|..||.++|..++++.|+|+++
T Consensus 377 y~~al~v~p~~------aaa~nNLa~i~kqqgnl~~A------------------i~~YkealrI~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 377 YLKALEVFPEF------AAAHNNLASIYKQQGNLDDA------------------IMCYKEALRIKPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHhhChhh------hhhhhhHHHHHHhcccHHHH------------------HHHHHHHHhcCchHHHHHHhcchHH
Confidence 99999999998 44555555444445555555 8999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhccC--CC-CCc
Q 004426 651 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILADTN--LD-PES 726 (754)
Q Consensus 651 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~~~--~~-~~~ 726 (754)
-.+|+..+|+.+|.+|+..+|..+||+.|+|.++-+.|+..+|++.|++|+.|+|+|. ||-+.+-++-=-+ .| ..-
T Consensus 433 ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred HHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 9999998874222 22 122
Q ss_pred hhHHHHHHHHHh
Q 004426 727 STYVIQLLEEAL 738 (754)
Q Consensus 727 ~~~~~~~~~~~~ 738 (754)
-.++++..++-+
T Consensus 513 ~~kl~sivrdql 524 (966)
T KOG4626|consen 513 MKKLVSIVRDQL 524 (966)
T ss_pred HHHHHHHHHHHH
Confidence 355666666654
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-33 Score=307.42 Aligned_cols=348 Identities=16% Similarity=0.076 Sum_probs=288.5
Q ss_pred HHHHHhhhhcchhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHh
Q 004426 387 LSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKV 464 (754)
Q Consensus 387 LswV~~d~~~r~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~ 464 (754)
++.+..+... .+.+..+.+.+++..+++ ..+|.++|.++...|+.+.|..+|..||.++| ..+...+|.++-..
T Consensus 122 ~aN~~kerg~-~~~al~~y~~aiel~p~f---ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 122 LANILKERGQ-LQDALALYRAAIELKPKF---IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHHHHhch-HHHHHHHHHHHHhcCchh---hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhh
Confidence 4444443333 444555666666665554 56888888888888888889888888888876 45677788888888
Q ss_pred CCHHHHHHHHHHHHHccCCCHHHHHHhhhc----CChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 465 GQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDR 540 (754)
Q Consensus 465 G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y----~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~r 540 (754)
|+..+|...|.+||+..|.++.+|.+.|-. +.-..|+..|.+|+.+||.+.+||.|+|++|.+.+.+++|+..|.|
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 999999999999999888877777776521 2227888899999999999999999999999999999999999999
Q ss_pred HHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchh-hhHHHHHHhhhhc--------cccchhhh
Q 004426 541 IIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS-GDHLVKLLNHHVR--------SWSPADCW 610 (754)
Q Consensus 541 Al~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~-~~~~~~~l~~~~~--------~~~~A~~~ 610 (754)
|+.+.|+ ...+-+.|.+|.++|+.|-||..|++|++++|++..++.+.+ |....+.+.+.++ .|.-||++
T Consensus 278 Al~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam 357 (966)
T KOG4626|consen 278 ALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAM 357 (966)
T ss_pred HHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHH
Confidence 9999996 566677888899999999999999999999999888777766 5555566655554 45557778
Q ss_pred hhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC
Q 004426 611 IKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH 689 (754)
Q Consensus 611 ~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~ 689 (754)
.+++......+.++ |...|..||+..|..+.+++|+|.++..+|+..+|+.+|+.|++++|..++++.|+|..|-.+|+
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 88888888888888 88899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChH-HHHHHHHHhhccCCCCCchhHHHHHHHHHhcCCC
Q 004426 690 REEALSRAEKSISIERTFE-AFFLKAYILADTNLDPESSTYVIQLLEEALRCPS 742 (754)
Q Consensus 690 ~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (754)
.++|++.|+|||.++|.|+ ||-+.|-+.-|+.==| .-|+--++|||=--
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~----~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIP----EAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcH----HHHHHHHHHHccCC
Confidence 9999999999999999999 9999999999987544 35777788887433
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=2.4e-28 Score=279.29 Aligned_cols=165 Identities=14% Similarity=0.133 Sum_probs=148.1
Q ss_pred EEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHhc
Q 004426 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFAN 299 (754)
Q Consensus 220 V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~vlelL~aA~ 299 (754)
|++ +.|++|+|||+|||++|+||++||+++|+|+.+ +|.+...++++++|+.+|+|+|||++. ++.+||++||.+|+
T Consensus 25 ~~~-~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~-it~~nV~~ll~aA~ 101 (480)
T PHA02790 25 IIE-AIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY-IDSHNVVNLLRASI 101 (480)
T ss_pred EEE-EcCcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE-EecccHHHHHHHHH
Confidence 666 455799999999999999999999999999965 566521389999999999999999999 99999999999999
Q ss_pred hhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCc--hhhhhh-----ccCchhhHH
Q 004426 300 RFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYN--PKVMKI-----FCSSEATER 372 (754)
Q Consensus 300 ~f~l~~Lk~~Ce~~L~~~i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~--e~f~~L-----l~~~~~~~~ 372 (754)
+||++.+++.|++||.+.|+ ++||+.|+.+|+.|++++|.+.+.+||.+||.++.++ ++|..| |.++++
T Consensus 102 ~Lqi~~v~~~C~~fL~~~l~-~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~~~lLssd~L--- 177 (480)
T PHA02790 102 LTSVEFIIYTCINFILRDFR-KEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMKLILESDEL--- 177 (480)
T ss_pred HhChHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCHHHhcccccC---
Confidence 99999999999999999999 9999999999999999999999999999999999986 888764 444433
Q ss_pred HHhcccchhHHHHHHHHHHhh
Q 004426 373 LANVGHASFLLYYFLSQVAME 393 (754)
Q Consensus 373 l~~v~~~~~~~~a~LswV~~d 393 (754)
.+..+..++.+++.|+.++
T Consensus 178 --~v~~Ee~V~eav~~Wl~~~ 196 (480)
T PHA02790 178 --NVPDEDYVVDFVIKWYMKR 196 (480)
T ss_pred --CCccHHHHHHHHHHHHHhh
Confidence 3677889999999999975
No 4
>PHA02713 hypothetical protein; Provisional
Probab=99.95 E-value=6.5e-28 Score=279.87 Aligned_cols=191 Identities=9% Similarity=0.142 Sum_probs=164.1
Q ss_pred CCCCCCcEEEEEC-CeEEehhhHHHhhcCHHHHHhhcCCCCCCC-cceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhH
Q 004426 213 SLEEDDSVTFCVR-DKEISFVRNKIASLSSPFKAMLYGGFVESK-RKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGI 290 (754)
Q Consensus 213 ~~~~~~~V~f~V~-g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~-~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~ 290 (754)
.++...+|+|+|+ |++|+|||.|||++|+||++||+++|+|+. +++|+| +++++++|+.+|+|+|||+ ++.++
T Consensus 21 ~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l--~~v~~~~~~~ll~y~Yt~~---i~~~n 95 (557)
T PHA02713 21 DDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNL--QMFDKDAVKNIVQYLYNRH---ISSMN 95 (557)
T ss_pred hCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEe--ccCCHHHHHHHHHHhcCCC---CCHHH
Confidence 3444445999998 899999999999999999999999999875 789999 9999999999999999997 56899
Q ss_pred HHHHHHHhchhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCchhhhhhccCchhh
Q 004426 291 VLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEAT 370 (754)
Q Consensus 291 vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~e~f~~Ll~~~~~~ 370 (754)
|++||.+|++||++.|++.|++||.+.++ ++||+.++.++..+.+..|.+.|.+||++||.++.++++|++|.. ....
T Consensus 96 v~~ll~aA~~lqi~~l~~~C~~~l~~~l~-~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~-~~l~ 173 (557)
T PHA02713 96 VIDVLKCADYLLIDDLVTDCESYIKDYTN-HDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVF-EILF 173 (557)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHhhCC-ccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCH-HHHH
Confidence 99999999999999999999999999999 899999999889898889999999999999999999999987621 1111
Q ss_pred HHH-----HhcccchhHHHHHHHHHHhhhhcchhhHHHHHHHhhhch
Q 004426 371 ERL-----ANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECS 412 (754)
Q Consensus 371 ~~l-----~~v~~~~~~~~a~LswV~~d~~~r~~~~v~LLer~vr~~ 412 (754)
+.+ ..+..+..++.+++.|+.+|...|. +..++++. +|++
T Consensus 174 ~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r~-~~~~ll~~-VR~~ 218 (557)
T PHA02713 174 DIISTNDNVYLYREGYKVTILLKWLEYNYITEE-QLLCILSC-IDIQ 218 (557)
T ss_pred HHhccccccCCCcHHHHHHHHHHHHhcCHHHHH-HHhhhHhh-hhHh
Confidence 111 1366788999999999999986654 45577765 5654
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.95 E-value=1.7e-27 Score=275.88 Aligned_cols=189 Identities=23% Similarity=0.247 Sum_probs=173.6
Q ss_pred CCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhHHHH
Q 004426 214 LEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLE 293 (754)
Q Consensus 214 ~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~vle 293 (754)
.+..-+|++.|++++|+|||.||||+|+||++||+++++|+.+.+|+| .++++.+|+.+++|+|||++. |+.+||.+
T Consensus 33 ~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l--~~v~~~~l~~ll~y~Yt~~i~-i~~~nVq~ 109 (571)
T KOG4441|consen 33 EGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINL--EGVDPETLELLLDYAYTGKLE-ISEDNVQE 109 (571)
T ss_pred hCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEE--ecCCHHHHHHHHHHhhcceEE-echHhHHH
Confidence 344445999999999999999999999999999999999999999999 899999999999999999999 99999999
Q ss_pred HHHHhchhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCchhhhhh--------cc
Q 004426 294 LLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI--------FC 365 (754)
Q Consensus 294 lL~aA~~f~l~~Lk~~Ce~~L~~~i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~e~f~~L--------l~ 365 (754)
||.+|++||++.+++.|.+||.+.++ ++||+.|..+|+.|++.+|.+.+..||.+||.++.++++|++| +.
T Consensus 110 ll~aA~~lQi~~v~~~C~~fL~~~l~-~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ll~ 188 (571)
T KOG4441|consen 110 LLEAASLLQIPEVVDACCEFLESQLD-PSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIGLLS 188 (571)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHhhcc
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999875 33
Q ss_pred CchhhHHHHhcccchhHHHHHHHHHHhhhhcchhhHHHHHHHhhhch
Q 004426 366 SSEATERLANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECS 412 (754)
Q Consensus 366 ~~~~~~~l~~v~~~~~~~~a~LswV~~d~~~r~~~~v~LLer~vr~~ 412 (754)
++++ .+..+..+|.+.+.|+.+|...|..+...+++. +|++
T Consensus 189 ~d~l-----~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~-vr~~ 229 (571)
T KOG4441|consen 189 SDDL-----NVDSEEEVFEAAMRWVKHDFEEREEHLPALLEA-VRLP 229 (571)
T ss_pred ccCC-----CcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHh-cCcc
Confidence 3333 367777899999999999988888889999987 5554
No 6
>PHA03098 kelch-like protein; Provisional
Probab=99.95 E-value=4e-27 Score=273.18 Aligned_cols=189 Identities=14% Similarity=0.207 Sum_probs=165.7
Q ss_pred CCCCCcEEEEE--CCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhHH
Q 004426 214 LEEDDSVTFCV--RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIV 291 (754)
Q Consensus 214 ~~~~~~V~f~V--~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~v 291 (754)
++.+.+|+|+| +|++|+|||.||+++|+||++||+++|+ +.+|+| ++ ++++|+.||+|+|||++. ++.+++
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l--~~-~~~~~~~~l~y~Ytg~~~-i~~~~~ 78 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINL--NI-DYDSFNEVIKYIYTGKIN-ITSNNV 78 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEe--cC-CHHHHHHHHHHhcCCceE-EcHHHH
Confidence 44555677776 9999999999999999999999999998 568999 78 999999999999999999 999999
Q ss_pred HHHHHHhchhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCchhhhhhccCchhhH
Q 004426 292 LELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEATE 371 (754)
Q Consensus 292 lelL~aA~~f~l~~Lk~~Ce~~L~~~i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~e~f~~Ll~~~~~~~ 371 (754)
.+||.+|++|+++.|+..|++||.+.++ .+||+.++.+|..|++..|.+.|.+||.+||.++.++++|.+|-. ....+
T Consensus 79 ~~ll~~A~~l~~~~l~~~C~~~l~~~l~-~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~-~~l~~ 156 (534)
T PHA03098 79 KDILSIANYLIIDFLINLCINYIIKIID-DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSK-NELIK 156 (534)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCH-HHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999987721 11111
Q ss_pred HHH----hcccchhHHHHHHHHHHhhhhcchhhHHHHHHHhhhch
Q 004426 372 RLA----NVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECS 412 (754)
Q Consensus 372 ~l~----~v~~~~~~~~a~LswV~~d~~~r~~~~v~LLer~vr~~ 412 (754)
.+. .+..+..++.+++.|+.++...|..+..++++. +|++
T Consensus 157 ll~~~~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~-vR~~ 200 (534)
T PHA03098 157 ILSDDKLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKV-LRIT 200 (534)
T ss_pred HhcCCCcCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhh-cccc
Confidence 111 366778899999999999988777778888876 6654
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=8e-25 Score=258.15 Aligned_cols=282 Identities=16% Similarity=0.109 Sum_probs=236.2
Q ss_pred hhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcch--hhhhhHHHHHHHhCCHHHHHHHHH
Q 004426 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLIN 475 (754)
Q Consensus 398 ~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~--~a~~~larv~~~~G~~~~A~~~~~ 475 (754)
.+.++..+++++...++ ...+.++|.++...|++++|+.+|++|+++++. .++..+|.++..+|++++|+.++.
T Consensus 143 ~~~Ai~~y~~al~~~p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~ 218 (615)
T TIGR00990 143 FNKAIKLYSKAIECKPD----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLT 218 (615)
T ss_pred HHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66788888888876553 356889999999999999999999999999654 478889999999999999988776
Q ss_pred HHHHccC------------------------------C---------------------------------CHHHHHHhh
Q 004426 476 SIISEHK------------------------------P---------------------------------TGWMYQERS 492 (754)
Q Consensus 476 ~aI~~~~------------------------------~---------------------------------~g~ay~~r~ 492 (754)
.+....+ . .+.++...+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (615)
T TIGR00990 219 ASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLG 298 (615)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHH
Confidence 5432211 1 011111111
Q ss_pred h-------cCChhhHHHHHHHHHhh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHc
Q 004426 493 L-------YNLGREKIVDLNYASEL---DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAA 561 (754)
Q Consensus 493 ~-------y~~g~eAl~dl~kAi~L---dP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~l 561 (754)
. -...++|+..|++++++ +|+.+.+|.++|.++..+|++++|+..|+++++++|+ +..+..+|.++..+
T Consensus 299 ~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~ 378 (615)
T TIGR00990 299 LKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLEL 378 (615)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC
Confidence 0 01236888999999986 5899999999999999999999999999999999997 78888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChh
Q 004426 562 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF 641 (754)
Q Consensus 562 gd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~ 641 (754)
|++++|+..|+++++++|++. .+...++.+....+++++| +.+|+++++++|.+..
T Consensus 379 g~~~eA~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A------------------~~~~~kal~l~P~~~~ 434 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLNSEDP------DIYYHRAQLHFIKGEFAQA------------------GKDYQKSIDLDPDFIF 434 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHcCccCHH
Confidence 999999999999999999983 3444444444444444444 8899999999999999
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004426 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (754)
Q Consensus 642 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~ 707 (754)
+++++|.++.++|++++|+..++++++..|+++++++++|.++.++|++++|+..|++|+.++|.+
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999875
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=6.7e-24 Score=250.31 Aligned_cols=326 Identities=17% Similarity=0.128 Sum_probs=221.0
Q ss_pred hHHHHHHHHHHhhhhcchhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcch---------
Q 004426 381 FLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--------- 451 (754)
Q Consensus 381 ~~~~a~LswV~~d~~~r~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~--------- 451 (754)
.+++.-++....... +.+.++..++.++...++. ..+++.+|.++...|++++|+.+|..++.++..
T Consensus 160 ~~~~~n~a~~~~~l~-~~~~Ai~~~~~al~l~p~~---~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
T TIGR00990 160 PVYYSNRAACHNALG-DWEKVVEDTTAALELDPDY---SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV 235 (615)
T ss_pred hHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 345555555544433 3667778888877765543 468899999999999999999988765433110
Q ss_pred -----------------------hhhhhHHH--------------------------HHH----------HhCCHHHHHH
Q 004426 452 -----------------------YSLAGLAR--------------------------AKY----------KVGQQYSAYK 472 (754)
Q Consensus 452 -----------------------~a~~~lar--------------------------v~~----------~~G~~~~A~~ 472 (754)
.++..++. .+. ..+++++|..
T Consensus 236 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~ 315 (615)
T TIGR00990 236 ERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315 (615)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence 00000100 001 1257888999
Q ss_pred HHHHHHHcc---CCCHHHHHHhhhc----CChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004426 473 LINSIISEH---KPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK 545 (754)
Q Consensus 473 ~~~~aI~~~---~~~g~ay~~r~~y----~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~ 545 (754)
.|.+++... |+.+.++..++.. +..++|+.+|++|++++|+++.+|.++|.++..+|++++|+..|+++++++
T Consensus 316 ~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 395 (615)
T TIGR00990 316 AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN 395 (615)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999763 6677777777642 344999999999999999999999999999999999999999999999999
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc
Q 004426 546 LS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG 624 (754)
Q Consensus 546 p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~ 624 (754)
|+ +..++.+|.++..+|++++|+.+|+++++++|++... ...++.+.....++++
T Consensus 396 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~------~~~la~~~~~~g~~~e------------------ 451 (615)
T TIGR00990 396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS------HIQLGVTQYKEGSIAS------------------ 451 (615)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH------HHHHHHHHHHCCCHHH------------------
Confidence 96 8899999999999999999999999999999998542 2222222222222222
Q ss_pred hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHH------HHHHHHHHH-cCCHHHHHHHH
Q 004426 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL------VYEGWILYD-TGHREEALSRA 697 (754)
Q Consensus 625 al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~------~~~G~~ly~-~G~~eeAl~~~ 697 (754)
|+..+++++...|.++.+++++|.++..+|++++|+..|++|++++|++...+ ++.+.+++. .|++++|+..+
T Consensus 452 A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 452 SMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 35666666666666666666666666666666666666666666666543322 233333443 46666666666
Q ss_pred HHHHhcCCChH-HHHHHHHHhhccCCCCCchhHHHHHHHHHh
Q 004426 698 EKSISIERTFE-AFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (754)
Q Consensus 698 e~Ai~l~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (754)
++|+.++|++. ++...|.++.... --..-|.++|+|+
T Consensus 532 ~kAl~l~p~~~~a~~~la~~~~~~g----~~~eAi~~~e~A~ 569 (615)
T TIGR00990 532 EKALIIDPECDIAVATMAQLLLQQG----DVDEALKLFERAA 569 (615)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHcc----CHHHHHHHHHHHH
Confidence 66666666665 4555555554433 1233444555554
No 9
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.93 E-value=8.6e-26 Score=236.87 Aligned_cols=200 Identities=24% Similarity=0.304 Sum_probs=168.1
Q ss_pred cccCCCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCC--CC
Q 004426 210 VCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL--FC 287 (754)
Q Consensus 210 ~~~~~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~--i~ 287 (754)
+...+.+.++|+|+|++++|+|||+|||+||.|||+|++|||.|+.+..|.| .+.+.++|+.+|+|||||++.. ..
T Consensus 37 ~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipL--q~t~~eAF~~lLrYiYtg~~~l~~~~ 114 (620)
T KOG4350|consen 37 ELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPL--QETNSEAFRALLRYIYTGKIDLAGVE 114 (620)
T ss_pred HHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccc--ccccHHHHHHHHHHHhhcceecccch
Confidence 3345566677999999999999999999999999999999999999999999 7888999999999999999974 56
Q ss_pred hhHHHHHHHHhchhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCchhhhhhccCc
Q 004426 288 PGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSS 367 (754)
Q Consensus 288 ~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~e~f~~Ll~~~ 367 (754)
.+.+++.|.+|++|++..|...-.+||++.+. .+|+|.+++.|..|+.++|.+.|+.|+.+|..+++.+++|..|- .+
T Consensus 115 ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~-~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LS-k~ 192 (620)
T KOG4350|consen 115 EDILLDYLSLAHRYGFIQLETAISEYLKEILK-NENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLS-KD 192 (620)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHc-ccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhh-HH
Confidence 78899999999999999999999999999999 89999999999999999999999999999999999999998873 22
Q ss_pred hhhHHHHh---cccchhHHHHHHHHHHhhhhcchhhHHHHHHHhhhchhhhHH
Q 004426 368 EATERLAN---VGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQ 417 (754)
Q Consensus 368 ~~~~~l~~---v~~~~~~~~a~LswV~~d~~~r~~~~v~LLer~vr~~~~~~q 417 (754)
.+.+.+.. ...+..+|.++++|-+++.+. .-..+-.++|+|...+.
T Consensus 193 sL~e~l~RDsFfApE~~IFlAv~~W~~~Nske----~~k~~~~~VRLPLm~lt 241 (620)
T KOG4350|consen 193 SLKELLARDSFFAPELKIFLAVRSWHQNNSKE----ASKVLLELVRLPLMTLT 241 (620)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHhcCchh----hHHHHHHHHhhhhccHH
Confidence 23333322 233456778888998876532 22334456777765543
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.7e-22 Score=239.45 Aligned_cols=317 Identities=9% Similarity=-0.036 Sum_probs=260.0
Q ss_pred hhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHH
Q 004426 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLIN 475 (754)
Q Consensus 398 ~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~ 475 (754)
......+++..+.-.++ ...+++.+|......|++++|+..|++++++.| ..++..+|.++...|++++|+..+.
T Consensus 58 ~~~A~~l~~~~l~~~p~---~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~ 134 (656)
T PRK15174 58 TDVGLTLLSDRVLTAKN---GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAE 134 (656)
T ss_pred cchhHHHhHHHHHhCCC---chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33455566555443332 356789999999999999999999999999955 4578889999999999999999999
Q ss_pred HHHHccCCCHHHHHHhhh----cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C-HH
Q 004426 476 SIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-S-VD 549 (754)
Q Consensus 476 ~aI~~~~~~g~ay~~r~~----y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p-~-~~ 549 (754)
+++...|+...++..++. .+..++|+..+.+++..+|+++.++.+.+ .+..+|++++|+..+++++..+| + ..
T Consensus 135 ~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 135 QAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQE 213 (656)
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence 999999998888777653 23448999999999999999999998865 48899999999999999999876 3 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHH
Q 004426 550 CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVI 629 (754)
Q Consensus 550 ~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~ 629 (754)
.+...+.++...|++++|+..|+++++++|++ ..+...++.+.....++++|. .+|+..+
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~------~~~~~~Lg~~l~~~G~~~eA~--------------~~A~~~~ 273 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARGLDG------AALRRSLGLAYYQSGRSREAK--------------LQAAEHW 273 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCchhhH--------------HHHHHHH
Confidence 33456778999999999999999999999987 334444444444444544431 1258899
Q ss_pred HHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-
Q 004426 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE- 708 (754)
Q Consensus 630 ~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~- 708 (754)
+++++++|+++.++.++|.++..+|++++|+..+++|++++|++++++.++|.++..+|++++|++.|+++++.+|+..
T Consensus 274 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 274 RHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHhhccCCCCCchhHHHHHHHHHhcCCC
Q 004426 709 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPS 742 (754)
Q Consensus 709 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (754)
++...|.++.... --..-+..++.|++.-.
T Consensus 354 ~~~~~a~al~~~G----~~deA~~~l~~al~~~P 383 (656)
T PRK15174 354 WNRYAAAALLQAG----KTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHHHhCh
Confidence 4555687776543 34455677788876533
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=4.9e-22 Score=235.48 Aligned_cols=284 Identities=14% Similarity=0.030 Sum_probs=245.1
Q ss_pred chhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHH
Q 004426 397 VSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLI 474 (754)
Q Consensus 397 r~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~ 474 (754)
+.+.+...+++++...++. ..++..+|.++...|++++|+..|+++++++| ..++..+++++...|++++|...+
T Consensus 91 ~~~~A~~~l~~~l~~~P~~---~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 91 QPDAVLQVVNKLLAVNVCQ---PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred CHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 3667888888888766554 45788999999999999999999999999854 457778899999999999999999
Q ss_pred HHHHHccCCCHHHHHHhhh---cCChhhHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HH
Q 004426 475 NSIISEHKPTGWMYQERSL---YNLGREKIVDLNYASELDP-TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VD 549 (754)
Q Consensus 475 ~~aI~~~~~~g~ay~~r~~---y~~g~eAl~dl~kAi~LdP-~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~ 549 (754)
.+++...|+.+.++..... .+...+|+..++++++.+| .....+..+|.++.++|++++|+..|+++++++|+ +.
T Consensus 168 ~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~ 247 (656)
T PRK15174 168 RTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAA 247 (656)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 9999999887776654422 2333899999999999986 44445566789999999999999999999999996 78
Q ss_pred HHHHHHHHHHHcCCHHH----HHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccch
Q 004426 550 CLELRAWLFIAADDYES----ALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGS 625 (754)
Q Consensus 550 ~~~~ra~~~~~lgd~~~----Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a 625 (754)
.++++|.++..+|++++ |+..|+++++++|++ ..+...++.+....+++++|
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~g~~~eA------------------ 303 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN------VRIVTLYADALIRTGQNEKA------------------ 303 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHH------------------
Confidence 88899999999999996 899999999999997 34555555555555555555
Q ss_pred HHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 705 (754)
Q Consensus 626 l~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~ 705 (754)
+..++++++++|.++.++.++|.++.++|++++|++.|+++++.+|+++..+...|.++..+|++++|++.|+++++++|
T Consensus 304 ~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 304 IPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 88999999999999999999999999999999999999999999999998888899999999999999999999999988
Q ss_pred Ch
Q 004426 706 TF 707 (754)
Q Consensus 706 ~~ 707 (754)
+.
T Consensus 384 ~~ 385 (656)
T PRK15174 384 SH 385 (656)
T ss_pred hh
Confidence 83
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=7.9e-22 Score=247.74 Aligned_cols=307 Identities=13% Similarity=-0.030 Sum_probs=220.4
Q ss_pred hhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcchhh----------------hhhHHHHH
Q 004426 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYS----------------LAGLARAK 461 (754)
Q Consensus 398 ~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~a----------------~~~larv~ 461 (754)
.+.++..++++++..++. ..+++.+|.++...|++++|+..|++|+++.+... ....|.++
T Consensus 285 ~~~A~~~l~~aL~~~P~~---~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 285 GGKAIPELQQAVRANPKD---SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 456677777766654432 45677888888888888888888888888744211 12335667
Q ss_pred HHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc----CChhhHHHHHHHHHhhCCCChHHHHHHHHH-------------
Q 004426 462 YKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVA------------- 524 (754)
Q Consensus 462 ~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y----~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~------------- 524 (754)
...|++++|+..+.+++..+|+...++...+.. +..++|+..|++|++++|++..++.+++.+
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l 441 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI 441 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 788888888888888888888776666555421 233788888888888888887776655544
Q ss_pred -----------------------------HHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 525 -----------------------------KMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLAL 574 (754)
Q Consensus 525 -----------------------------l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~a 574 (754)
+...|++++|++.|+++++++|+ +..++.++.++..+|++++|+..|+++
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44578899999999999999995 777788888999999999999999999
Q ss_pred HhcCCCccccccchhhh-----------HHH---------------------------HHHhhhh-----------cccc
Q 004426 575 LALESNYMMFHGRVSGD-----------HLV---------------------------KLLNHHV-----------RSWS 605 (754)
Q Consensus 575 l~l~P~~~~~~~~~~~~-----------~~~---------------------------~~l~~~~-----------~~~~ 605 (754)
++++|++....-..+.. ... ....... ...+
T Consensus 522 l~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~ 601 (1157)
T PRK11447 522 AQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP 601 (1157)
T ss_pred HHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 99999875421111000 000 0000001 1112
Q ss_pred chhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 004426 606 PADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL 684 (754)
Q Consensus 606 ~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~l 684 (754)
....++.+.+.....++++ |+..|+++++++|.++++++++|.++..+|++++|+..++++++.+|++..++..+|+++
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~ 681 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAW 681 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 2233444455555556666 778888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCh
Q 004426 685 YDTGHREEALSRAEKSISIERTF 707 (754)
Q Consensus 685 y~~G~~eeAl~~~e~Ai~l~~~~ 707 (754)
..+|++++|++.|++++++.|+.
T Consensus 682 ~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 682 AALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HhCCCHHHHHHHHHHHhhhCccC
Confidence 88888888888888888876543
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=1.3e-20 Score=227.35 Aligned_cols=333 Identities=17% Similarity=0.109 Sum_probs=239.0
Q ss_pred hhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHH
Q 004426 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLIN 475 (754)
Q Consensus 398 ~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~ 475 (754)
.+....+++++.+..+.. ...+..++..+...|++++|+..++++++..+ ...+..+|+++...|++++|+..+.
T Consensus 549 ~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 625 (899)
T TIGR02917 549 EEEAVAWLEKAAELNPQE---IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625 (899)
T ss_pred HHHHHHHHHHHHHhCccc---hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666776665543322 23455677777777888888888877776632 3466677777778888888888888
Q ss_pred HHHHccCCCHHHHHHhhh----cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHH
Q 004426 476 SIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDC 550 (754)
Q Consensus 476 ~aI~~~~~~g~ay~~r~~----y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~ 550 (754)
+++...|....++...+. .+..++|+..|+++++.+|++..++..++.++...|++++|+..++++.+..|+ +..
T Consensus 626 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 705 (899)
T TIGR02917 626 KLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALG 705 (899)
T ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHH
Confidence 887777766665554432 123377777888888888888888888888888888888888888777777774 566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhh--------ccccchhhhhhhhhccccccc
Q 004426 551 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV--------RSWSPADCWIKLYDRWSSVDD 622 (754)
Q Consensus 551 ~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~--------~~~~~A~~~~~l~~~~~~~~d 622 (754)
+..+|.++...|++++|+..|+++++.+|+.....+...+....+...... ...+....+..+.......++
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 785 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD 785 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 666777777778888888888888777776532222211111111111111 111222334444444444555
Q ss_pred cc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 623 IG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (754)
Q Consensus 623 ~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai 701 (754)
.. |+..|+++++.+|.++.+++++|.++..+|+ .+|+..+++++++.|+++..+.++|++++.+|++++|+..|++++
T Consensus 786 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 786 YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55 7889999999999999999999999999999 779999999999999999999999999999999999999999999
Q ss_pred hcCCChH-HHHHHHHHhhccCCCCCchhHHHHHHHHHh
Q 004426 702 SIERTFE-AFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (754)
Q Consensus 702 ~l~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (754)
+++|+.. +++..|.++...+- -...+++++++|
T Consensus 865 ~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~ 898 (899)
T TIGR02917 865 NIAPEAAAIRYHLALALLATGR----KAEARKELDKLL 898 (899)
T ss_pred hhCCCChHHHHHHHHHHHHcCC----HHHHHHHHHHHh
Confidence 9999765 88888888877643 455666666665
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.89 E-value=2.4e-20 Score=224.91 Aligned_cols=312 Identities=12% Similarity=0.067 Sum_probs=198.2
Q ss_pred hhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHH
Q 004426 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLIN 475 (754)
Q Consensus 398 ~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~ 475 (754)
.+.+...+++++...+.. ..+++++|.++...|++++|+..|++++...+ ..++..++.++...|++++|...+.
T Consensus 481 ~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 557 (899)
T TIGR02917 481 LAKAREAFEKALSIEPDF---FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE 557 (899)
T ss_pred HHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445556666655443322 34566677777777777777777777776643 3456666777777777777777777
Q ss_pred HHHHccCCCHHHHHHhhh----cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHH
Q 004426 476 SIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDC 550 (754)
Q Consensus 476 ~aI~~~~~~g~ay~~r~~----y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~ 550 (754)
+++...|.....+...+. .+..++|+..++++++.+|.+..+|..+|.++...|++++|+..|+++++.+|+ +..
T Consensus 558 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 637 (899)
T TIGR02917 558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637 (899)
T ss_pred HHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 777777655444433321 122377888888888888888888888888888888888888888888888884 666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhcccc---------------chhhhhhhhh
Q 004426 551 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWS---------------PADCWIKLYD 615 (754)
Q Consensus 551 ~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~---------------~A~~~~~l~~ 615 (754)
+...+.++...|++++|+..|+++++.+|++.... .....+.....+++ ....|..++.
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 711 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ------IGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGD 711 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH------HHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHH
Confidence 77778888888888888888888888888754311 11111111111221 1222223333
Q ss_pred ccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHH
Q 004426 616 RWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 694 (754)
Q Consensus 616 ~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 694 (754)
.+...+++. |+..+.+++..+|.+ ..+++.+.++.++|++++|+..++++++.+|++..+++.+|.++..+|++++|+
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 790 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAI 790 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 333334444 566666666666665 555666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCChH-HHHHHHHHhhc
Q 004426 695 SRAEKSISIERTFE-AFFLKAYILAD 719 (754)
Q Consensus 695 ~~~e~Ai~l~~~~~-a~~~~~~~~~~ 719 (754)
..|++++.+.|++. +++..|+++..
T Consensus 791 ~~~~~~~~~~p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 791 KHYRTVVKKAPDNAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 66666666666655 45555554443
No 15
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.2e-21 Score=208.18 Aligned_cols=298 Identities=16% Similarity=0.120 Sum_probs=239.8
Q ss_pred hhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcch--hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHH
Q 004426 413 TERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQE 490 (754)
Q Consensus 413 ~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~--~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~ 490 (754)
.+....+.++-+.|+-++..|+|++||++|+.||++.|. ..+.+++-+|...|++.+.+++..++++++|+...+++.
T Consensus 109 e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~R 188 (606)
T KOG0547|consen 109 EERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLR 188 (606)
T ss_pred HHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 334445678889999999999999999999999999654 356677889999999999999999999999988888877
Q ss_pred hhhc----CChhhHHHHHHHHHhhCC------------------------------------------------------
Q 004426 491 RSLY----NLGREKIVDLNYASELDP------------------------------------------------------ 512 (754)
Q Consensus 491 r~~y----~~g~eAl~dl~kAi~LdP------------------------------------------------------ 512 (754)
|+.- +...+|+.|. .|+++.-
T Consensus 189 RA~A~E~lg~~~eal~D~-tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFDV-TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred HHHHHHhhccHHHHHHhh-hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 7411 0001121111 0111110
Q ss_pred -----------------------------------------------CC---------hHHHHHHHHHHHHcCCHHHHHH
Q 004426 513 -----------------------------------------------TL---------SFPYKYRAVAKMEEGQIRAAIS 536 (754)
Q Consensus 513 -----------------------------------------------~~---------~~ay~~rg~~l~~lg~~~eAl~ 536 (754)
.+ +.++..||.-+.--|++.+|..
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 01 5778889999999999999999
Q ss_pred HHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhh
Q 004426 537 EIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYD 615 (754)
Q Consensus 537 ~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~ 615 (754)
+|+++|.++|. +..|-.|+.+|....+-++-..+|++|..+||+|. -.++.++.+.-.++++++|
T Consensus 348 d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~------dvYyHRgQm~flL~q~e~A-------- 413 (606)
T KOG0547|consen 348 DFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP------DVYYHRGQMRFLLQQYEEA-------- 413 (606)
T ss_pred hHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC------chhHhHHHHHHHHHHHHHH--------
Confidence 99999999996 44466799999999999999999999999999984 4556666666677778888
Q ss_pred ccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHH
Q 004426 616 RWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALS 695 (754)
Q Consensus 616 ~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~ 695 (754)
+++|+++++++|.++.+|..++.++.|+++++++|..|+.+.+.-|+-+|.+..-|.+|.++++|++|+.
T Consensus 414 ----------~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 414 ----------IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred ----------HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCC------hH-HHHHHHHHhhccCCCCCchhHHHHHHHHHh
Q 004426 696 RAEKSISIERT------FE-AFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (754)
Q Consensus 696 ~~e~Ai~l~~~------~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (754)
.|.+||.+.|. .. .+-.||..+.--. +--.--++||+.|+
T Consensus 484 ~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk---~d~~~a~~Ll~KA~ 530 (606)
T KOG0547|consen 484 QYDKAIELEPREHLIIVNAAPLVHKALLVLQWK---EDINQAENLLRKAI 530 (606)
T ss_pred HHHHHHhhccccccccccchhhhhhhHhhhchh---hhHHHHHHHHHHHH
Confidence 99999999998 44 6677777765422 22233445555443
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=8.6e-20 Score=229.42 Aligned_cols=306 Identities=13% Similarity=-0.005 Sum_probs=239.4
Q ss_pred hhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHH--------------
Q 004426 424 QLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWM-------------- 487 (754)
Q Consensus 424 ~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~a-------------- 487 (754)
.+|..+...|++++|+..|+++++++| ..++..+|.++..+|++++|+..+.++++..|+....
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 458899999999999999999999955 4678899999999999999999999999998865321
Q ss_pred HHHhh----hcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHH--------
Q 004426 488 YQERS----LYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELR-------- 554 (754)
Q Consensus 488 y~~r~----~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~r-------- 554 (754)
....+ .-+..++|+..|++|++++|+++.++.++|.++..+|++++|+..|++|++++|+ ...+..+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 11111 1123389999999999999999999999999999999999999999999999996 4443322
Q ss_pred ----------------------------------HHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhh
Q 004426 555 ----------------------------------AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH 600 (754)
Q Consensus 555 ----------------------------------a~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~ 600 (754)
+.++...|++++|+..|+++++++|++.. +...++.+...
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~------~~~~LA~~~~~ 507 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW------LTYRLAQDLRQ 507 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH
Confidence 33456789999999999999999999853 33334444444
Q ss_pred hccccchhhhhhh---------------hhccccccccc-hHHHHHH---------------------------------
Q 004426 601 VRSWSPADCWIKL---------------YDRWSSVDDIG-SLAVINQ--------------------------------- 631 (754)
Q Consensus 601 ~~~~~~A~~~~~l---------------~~~~~~~~d~~-al~~~~~--------------------------------- 631 (754)
..++++|...++. ...+...++.. |+..+++
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 4444444322221 11122223333 4554443
Q ss_pred -------HHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 632 -------MLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (754)
Q Consensus 632 -------aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~ 704 (754)
.++.+|.++.+++.+|.++.++|++++|+..|+++++++|++++++.++|.++...|++++|++.|++++++.
T Consensus 588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 2456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChH-HHHHHHHHhhccCCCCCchhHHHHHHHHHhc
Q 004426 705 RTFE-AFFLKAYILADTNLDPESSTYVIQLLEEALR 739 (754)
Q Consensus 705 ~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (754)
|+.. +.+..|.++.... -...-+++++.++.
T Consensus 668 p~~~~~~~~la~~~~~~g----~~~eA~~~~~~al~ 699 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALG----DTAAAQRTFNRLIP 699 (1157)
T ss_pred CCChHHHHHHHHHHHhCC----CHHHHHHHHHHHhh
Confidence 8876 7777888776533 34556677777765
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=7e-21 Score=231.66 Aligned_cols=266 Identities=13% Similarity=0.025 Sum_probs=227.5
Q ss_pred HHHHHhhhhhhHhhccchHHHHHHHHHHhhhcch-hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhh---
Q 004426 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHI-YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL--- 493 (754)
Q Consensus 418 ka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~-~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~--- 493 (754)
...+++++|.++.. ++..+|+..|.+++...|. ....+++.++...|++++|+..+.+++...+.... +...+.
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a-~~~la~all 553 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNED-LLAAANTAQ 553 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHH-HHHHHHHHH
Confidence 35678999999987 8999999999999988553 23445677778999999999999998776554322 222221
Q ss_pred -cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004426 494 -YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTL 572 (754)
Q Consensus 494 -y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~ 572 (754)
-+...+|...|+++++++|++...+..++..+..+|++++|+..|++|++++|++..+.++|.++.++|++++|+..|+
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2333899999999999999999998888888888899999999999999999998888999999999999999999999
Q ss_pred HHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHH
Q 004426 573 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR 652 (754)
Q Consensus 573 ~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~ 652 (754)
++++++|++. .+...++.+.....++++| +..++++++++|+++.+++++|.++..
T Consensus 634 ~AL~l~Pd~~------~a~~nLG~aL~~~G~~eeA------------------i~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 634 AALELEPNNS------NYQAALGYALWDSGDIAQS------------------REMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHhCCCCH------HHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999983 3444444444444444444 889999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 004426 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEA 709 (754)
Q Consensus 653 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a 709 (754)
+|++++|+..|++|++++|+++......|+++....+++.|.+.|+|+..++|.--|
T Consensus 690 lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~a 746 (987)
T PRK09782 690 LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSSI 746 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccchh
Confidence 999999999999999999999999999999999999999999999999999998873
No 18
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.3e-20 Score=203.49 Aligned_cols=319 Identities=15% Similarity=0.120 Sum_probs=245.5
Q ss_pred hhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcchh--hhhhHHHHHHHhCCHHHHHHHHH
Q 004426 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIY--SLAGLARAKYKVGQQYSAYKLIN 475 (754)
Q Consensus 398 ~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~--a~~~larv~~~~G~~~~A~~~~~ 475 (754)
.+.++.....++.+-++. .+-|-|+.-.|...|++++-+++..+|++++|.+ ++.-+++++..+|++.+|..+..
T Consensus 131 Y~eAIkyY~~AI~l~p~e---piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~t 207 (606)
T KOG0547|consen 131 YDEAIKYYTQAIELCPDE---PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVT 207 (606)
T ss_pred HHHHHHHHHHHHhcCCCC---chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhh
Confidence 555667777777654432 4567788888888888888888888888887765 45556777888888887765532
Q ss_pred --------------------------------------------------------------------------------
Q 004426 476 -------------------------------------------------------------------------------- 475 (754)
Q Consensus 476 -------------------------------------------------------------------------------- 475 (754)
T Consensus 208 v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l 287 (606)
T KOG0547|consen 208 VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEAL 287 (606)
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHH
Confidence
Q ss_pred ----------------HHHHcc----CCC---------HHHHHHhhh----cCChhhHHHHHHHHHhhCCCChHHHHHHH
Q 004426 476 ----------------SIISEH----KPT---------GWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRA 522 (754)
Q Consensus 476 ----------------~aI~~~----~~~---------g~ay~~r~~----y~~g~eAl~dl~kAi~LdP~~~~ay~~rg 522 (754)
+.+... ..+ +.++..||- .+..-+|..+|+++|+|+|.+...|..||
T Consensus 288 ~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a 367 (606)
T KOG0547|consen 288 EKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRA 367 (606)
T ss_pred HhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHH
Confidence 000000 001 233333331 12226788999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchh-hhHHHHHHhhh
Q 004426 523 VAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS-GDHLVKLLNHH 600 (754)
Q Consensus 523 ~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~-~~~~~~~l~~~ 600 (754)
.+|+++++.++-..+|++|..+|| +++.||.||.+++-+++|++|++||+++++|+|+++..+.+.+ +.+..+.+...
T Consensus 368 ~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~ 447 (606)
T KOG0547|consen 368 AAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAES 447 (606)
T ss_pred HHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 5899999999999999999999999999999999988665555 44444444444
Q ss_pred hccccc--------hhhhhhhhhccccccccc-hHHHHHHHHHcCCC------ChhHHHhHHHHHHH-cCCHHHHHHHHH
Q 004426 601 VRSWSP--------ADCWIKLYDRWSSVDDIG-SLAVINQMLINDPG------KSFLRFRQSLLLLR-LNCQKAAMRCLR 664 (754)
Q Consensus 601 ~~~~~~--------A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~------~~~~~~~~g~~L~~-lg~~eeAl~~~~ 664 (754)
-..+++ +++..=..+.+-...+++ |+..|+.|+++.|. ++-.+.++|.++.+ .+++.+|+..++
T Consensus 448 m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~ 527 (606)
T KOG0547|consen 448 MKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLR 527 (606)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHH
Confidence 333333 344444444444457777 88999999999999 88889999988766 688889999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhcc
Q 004426 665 LARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADT 720 (754)
Q Consensus 665 ~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~~ 720 (754)
+|++++|..-.|+-.+|.+..+.|+.+||+..||+|+.+.++-.. -+.+|.|++-
T Consensus 528 KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E-~~~a~s~aeA 582 (606)
T KOG0547|consen 528 KAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESE-MVHAYSLAEA 582 (606)
T ss_pred HHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999988652 3455666553
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.1e-19 Score=201.67 Aligned_cols=288 Identities=15% Similarity=0.068 Sum_probs=231.7
Q ss_pred HHhhhhhhHhhccchHHHHHHHHHHhhhcch--hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCC-----------HHH
Q 004426 421 ALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPT-----------GWM 487 (754)
Q Consensus 421 Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~--~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~-----------g~a 487 (754)
..+.+|..+...|++++|+..|.++++.++. .++..+|.++...|++++|+..+++++...+.. |.+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 4567799999999999999999999999654 467788999999999999999999988753221 333
Q ss_pred HHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH-H-----HHHHHHHHHHHc
Q 004426 488 YQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-D-----CLELRAWLFIAA 561 (754)
Q Consensus 488 y~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~-~-----~~~~ra~~~~~l 561 (754)
|...+.+ ++|...|+++++.+|.+..++..++.++..+|++++|+..++++++..|.+ . .+..++.++...
T Consensus 117 ~~~~g~~---~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 117 YLKAGLL---DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHCCCH---HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 3433333 999999999999999999999999999999999999999999999988752 1 234577889999
Q ss_pred CCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCC-h
Q 004426 562 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK-S 640 (754)
Q Consensus 562 gd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~-~ 640 (754)
|++++|+..|+++++++|++. .+...++.+....+++++| +..++++++.+|.+ .
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A------------------~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCV------RASILLGDLALAQGDYAAA------------------IEALERVEEQDPEYLS 249 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCH------HHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHHChhhHH
Confidence 999999999999999999862 3444444444444555555 88999999999987 4
Q ss_pred hHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH-HHHHHhhc
Q 004426 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFF-LKAYILAD 719 (754)
Q Consensus 641 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~-~~~~~~~~ 719 (754)
.++..++.++..+|++++|+..++++++..|+.. .+..+|.++...|++++|+..++++++..|+...+. +-++.++.
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhc
Confidence 6788999999999999999999999999999875 459999999999999999999999999999999665 34444432
Q ss_pred cCCCCCchhHHHHHHHHHh
Q 004426 720 TNLDPESSTYVIQLLEEAL 738 (754)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~ 738 (754)
.. ..-....+.++|+.+
T Consensus 329 ~~--~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 329 AE--EGRAKESLLLLRDLV 345 (389)
T ss_pred cC--CccchhHHHHHHHHH
Confidence 21 122333455555554
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=2.2e-19 Score=218.75 Aligned_cols=289 Identities=11% Similarity=0.001 Sum_probs=214.0
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhhcc-h---h-hhhhHHHHHHHhCC-------------------------H-
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGH-I---Y-SLAGLARAKYKVGQ-------------------------Q- 467 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~-~---~-a~~~larv~~~~G~-------------------------~- 467 (754)
..++.+++....+.|++++|...|+.+....+ . . ...+++.++...+. .
T Consensus 376 ~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 455 (987)
T PRK09782 376 LTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLP 455 (987)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhh
Confidence 34677788888999999999999998877421 1 1 22244444444433 2
Q ss_pred --HHHHHHHHHHHHccCC--CHHHHHHhhhcC---ChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 468 --YSAYKLINSIISEHKP--TGWMYQERSLYN---LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDR 540 (754)
Q Consensus 468 --~~A~~~~~~aI~~~~~--~g~ay~~r~~y~---~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~r 540 (754)
..+...+.+++...|. .+.+|++.+... ...+|+..|.+++...|+.. .+..+|.++.+.|++++|+..|++
T Consensus 456 ~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 456 GIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred hhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2234445556666677 788887776432 22678888999999999754 466667777889999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchh--------hhHHHHHHhhhhccccchhhhhh
Q 004426 541 IIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS--------GDHLVKLLNHHVRSWSPADCWIK 612 (754)
Q Consensus 541 Al~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~--------~~~~~~~l~~~~~~~~~A~~~~~ 612 (754)
++...|.+..+...|.++.+.|++++|++.|+++++++|++........ ...-...++..++....++.|..
T Consensus 535 a~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~ 614 (987)
T PRK09782 535 ISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVA 614 (987)
T ss_pred HhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 8887777666777888889999999999999999999988754322211 01111112222222222556677
Q ss_pred hhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHH
Q 004426 613 LYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHRE 691 (754)
Q Consensus 613 l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~e 691 (754)
++..+...++.+ |+..++++++++|+++.+++++|.+|..+|++++|+..|++|++++|+++++++++|+++..+|+++
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 777777777777 7889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChH
Q 004426 692 EALSRAEKSISIERTFE 708 (754)
Q Consensus 692 eAl~~~e~Ai~l~~~~~ 708 (754)
+|+..|++|++++|++.
T Consensus 695 eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 695 ATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 99999999999999874
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=9.4e-20 Score=203.99 Aligned_cols=265 Identities=14% Similarity=0.147 Sum_probs=221.9
Q ss_pred HHHhhhhhhHhhccchHHHHHHHHHHhhhcchh--hhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcC--
Q 004426 420 LALHQLGCVMFEREEYKDACYYFEAAADAGHIY--SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN-- 495 (754)
Q Consensus 420 ~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~--a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~-- 495 (754)
-.+.++|.+|++.++|++|.++|+.+-.+.|.. ..-....++..+.+..+--......|.-.|+.+..|...|.+.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 356789999999999999999999877765421 1111122222222222222334567777887777776665422
Q ss_pred --ChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004426 496 --LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTL 572 (754)
Q Consensus 496 --~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd~~~Al~d~~ 572 (754)
..+.|+..|.+|+.+||+++++|.-+|.=+.....++.|+..|++||..+| ++.+||..|.+|.++|+++.|+-.|+
T Consensus 434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence 238999999999999999999999999999999999999999999999999 48999999999999999999999999
Q ss_pred HHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHH
Q 004426 573 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR 652 (754)
Q Consensus 573 ~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~ 652 (754)
+|+++||.+ .....-.+...+..++.++| |..|++|+-+||.++...|.+|.+|.-
T Consensus 514 kA~~INP~n------svi~~~~g~~~~~~k~~d~A------------------L~~~~~A~~ld~kn~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 514 KAVEINPSN------SVILCHIGRIQHQLKRKDKA------------------LQLYEKAIHLDPKNPLCKYHRASILFS 569 (638)
T ss_pred hhhcCCccc------hhHHhhhhHHHHHhhhhhHH------------------HHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 999999987 44444455566666666666 899999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 653 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
++++++|+.-++..-++.|++.-+++-+|.++-.+|+.+.|+..|-=|..++|.=+
T Consensus 570 ~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 570 LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999754
No 22
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.83 E-value=3.2e-19 Score=191.95 Aligned_cols=188 Identities=15% Similarity=0.071 Sum_probs=143.9
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
.+|..+|++|++++|+++.+|+++|.++..+|++++|++.|++|++++|+ ...+.++|.++...|++++|+.+|+++++
T Consensus 81 ~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 81 ALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999996 67788999999999999999999999999
Q ss_pred cCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCH
Q 004426 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 656 (754)
Q Consensus 577 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~ 656 (754)
++|++.. + ... ..+.....+.++ |+..+.+++...+. ..|. .+.+...+|+.
T Consensus 161 ~~P~~~~---~--~~~--~~l~~~~~~~~~------------------A~~~l~~~~~~~~~--~~~~-~~~~~~~lg~~ 212 (296)
T PRK11189 161 DDPNDPY---R--ALW--LYLAESKLDPKQ------------------AKENLKQRYEKLDK--EQWG-WNIVEFYLGKI 212 (296)
T ss_pred hCCCCHH---H--HHH--HHHHHccCCHHH------------------HHHHHHHHHhhCCc--cccH-HHHHHHHccCC
Confidence 9998741 0 000 001111122223 47777776654332 2232 46677777776
Q ss_pred HHH--H----HHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-ChHHHHHH
Q 004426 657 KAA--M----RCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER-TFEAFFLK 713 (754)
Q Consensus 657 eeA--l----~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~-~~~a~~~~ 713 (754)
.++ + ..++.+.+++|+.+++++++|.++..+|++++|+..|++|++++| +|..+...
T Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~ 276 (296)
T PRK11189 213 SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYA 276 (296)
T ss_pred CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 433 3 233344578888999999999999999999999999999999996 88755443
No 23
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.83 E-value=1.7e-19 Score=187.59 Aligned_cols=219 Identities=19% Similarity=0.202 Sum_probs=185.0
Q ss_pred CCCHHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHH
Q 004426 482 KPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCL-ELRAWLFIA 560 (754)
Q Consensus 482 ~~~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~-~~ra~~~~~ 560 (754)
-.+|..+..++.+ .+|+..|-.|+++||++..+++.||.+|+.+|+-..|+.|++|+|+++|+.-.. ..||.++++
T Consensus 42 lElGk~lla~~Q~---sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 42 LELGKELLARGQL---SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHhhhH---HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 3466777777777 999999999999999999999999999999999999999999999999996444 569999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCC
Q 004426 561 ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGK 639 (754)
Q Consensus 561 lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~ 639 (754)
+|.+++|.+||+++|.-+|++- ....+...+..+.++.....++. .|..-+|.. +...+++.|++.||+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~---~~~eaqskl~~~~e~~~l~~ql~-------s~~~~GD~~~ai~~i~~llEi~~Wd 188 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNG---LVLEAQSKLALIQEHWVLVQQLK-------SASGSGDCQNAIEMITHLLEIQPWD 188 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcc---hhHHHHHHHHhHHHHHHHHHHHH-------HHhcCCchhhHHHHHHHHHhcCcch
Confidence 9999999999999999999761 11123333333333333333332 233335666 778999999999999
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH---HHHHH
Q 004426 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE---AFFLK 713 (754)
Q Consensus 640 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~---a~~~~ 713 (754)
+.+|..++.|+..-|.+..|+.+++.|-++..|+.+.++..+.++|..|+.+.++..-++-+.++|+-- +||-|
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKK 265 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 55543
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=1.1e-17 Score=185.57 Aligned_cols=278 Identities=17% Similarity=0.110 Sum_probs=222.7
Q ss_pred hhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc------hhhhhhHHHHHHHhCCHHHHH
Q 004426 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH------IYSLAGLARAKYKVGQQYSAY 471 (754)
Q Consensus 398 ~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~------~~a~~~larv~~~~G~~~~A~ 471 (754)
.+.+...++++++..++. ..++..+|.++...|++++|+..+++++..+. ...+..+|.++...|+++.|.
T Consensus 51 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 127 (389)
T PRK11788 51 PDKAIDLFIEMLKVDPET---VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAE 127 (389)
T ss_pred hHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 556888888887765543 45678899999999999999999999887632 135677899999999999999
Q ss_pred HHHHHHHHccCCCHHHHHHhhh----cCChhhHHHHHHHHHhhCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 472 KLINSIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLS-----FPYKYRAVAKMEEGQIRAAISEIDRII 542 (754)
Q Consensus 472 ~~~~~aI~~~~~~g~ay~~r~~----y~~g~eAl~dl~kAi~LdP~~~-----~ay~~rg~~l~~lg~~~eAl~~~~rAl 542 (754)
..+.+++...|....++...+. .+..++|+..+.++++.+|... ..|.++|.++.++|++++|+..|++++
T Consensus 128 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 207 (389)
T PRK11788 128 ELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKAL 207 (389)
T ss_pred HHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999988776655554432 2233899999999999998864 367789999999999999999999999
Q ss_pred HcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhcccccc
Q 004426 543 VFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVD 621 (754)
Q Consensus 543 ~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~ 621 (754)
+.+|+ ...+..++.++...|++++|+..|+++++.+|++. ..+...+..+.....++++
T Consensus 208 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~~l~~~~~~~g~~~~--------------- 267 (389)
T PRK11788 208 AADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL-----SEVLPKLMECYQALGDEAE--------------- 267 (389)
T ss_pred hHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-----HHHHHHHHHHHHHcCCHHH---------------
Confidence 99996 67788899999999999999999999999999762 1122222222222233333
Q ss_pred ccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH--cCCHHHHHHHHHH
Q 004426 622 DIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD--TGHREEALSRAEK 699 (754)
Q Consensus 622 d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~--~G~~eeAl~~~e~ 699 (754)
|+..++++++.+|+...+ ..+|.++.+.|++++|++.++++++..|++.......+..+.. .|+.++|+..+++
T Consensus 268 ---A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 268 ---GLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred ---HHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 478999999999987554 8999999999999999999999999999998766555554432 5699999998887
Q ss_pred HHh
Q 004426 700 SIS 702 (754)
Q Consensus 700 Ai~ 702 (754)
.++
T Consensus 344 ~~~ 346 (389)
T PRK11788 344 LVG 346 (389)
T ss_pred HHH
Confidence 775
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=1.6e-17 Score=200.56 Aligned_cols=306 Identities=13% Similarity=0.005 Sum_probs=193.9
Q ss_pred hhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcch--hhhhhHHHHHHHhCCHHHHHHHHH
Q 004426 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLIN 475 (754)
Q Consensus 398 ~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~--~a~~~larv~~~~G~~~~A~~~~~ 475 (754)
.+.+...+++++...++. .. +..+|.++...|++++|+..|++++++.|. .++..++.++...|..+.|+..++
T Consensus 99 ~~eA~~~l~~~l~~~P~~---~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 99 YDEALVKAKQLVSGAPDK---AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred HHHHHHHHHHHHHhCCCC---HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 556777787776654444 23 667888888889999999999988888543 455667777777777776766666
Q ss_pred HHHHccCCC-------HHHHHHhhh----------cCChhhHHHHHHHHHhhCCCChH-------HHHHHHHHHHHcCCH
Q 004426 476 SIISEHKPT-------GWMYQERSL----------YNLGREKIVDLNYASELDPTLSF-------PYKYRAVAKMEEGQI 531 (754)
Q Consensus 476 ~aI~~~~~~-------g~ay~~r~~----------y~~g~eAl~dl~kAi~LdP~~~~-------ay~~rg~~l~~lg~~ 531 (754)
++.. .|.. ......+.. +...++|++.|+++++..|.++. ++..+..++...|++
T Consensus 175 ~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 175 DANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred hCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 5443 2221 011111100 00114456666666654332222 222223344556666
Q ss_pred HHHHHHHHHHHHcCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc----cccc--------hhhhHHHHHH
Q 004426 532 RAAISEIDRIIVFKLS-VD-CLELRAWLFIAADDYESALRDTLALLALESNYMM----FHGR--------VSGDHLVKLL 597 (754)
Q Consensus 532 ~eAl~~~~rAl~l~p~-~~-~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~----~~~~--------~~~~~~~~~l 597 (754)
++|++.|+++++..|. |. .....+.++..+|++++|+..|+++++.+|.+.. .... .........+
T Consensus 254 ~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 6666666666665432 22 1122355666666666666666666666655411 0000 0000001111
Q ss_pred hhhhccc----------------cchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHH
Q 004426 598 NHHVRSW----------------SPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAM 660 (754)
Q Consensus 598 ~~~~~~~----------------~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl 660 (754)
....+.. +..+.+..+...+...++.. |+..++++++..|+++.+++++|.++...|++++|+
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~ 413 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAE 413 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 1111110 01112222333333345555 789999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 661 RCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 661 ~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
..+++|++++|++.++++.+|.++..+|++++|.+.++++++..|+..
T Consensus 414 ~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 414 NELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999999999999999999999999
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=5.7e-17 Score=195.82 Aligned_cols=309 Identities=12% Similarity=0.007 Sum_probs=233.6
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhh---
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL--- 493 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~--- 493 (754)
+.++..+|..+...|++++|+..|+++++..| ..+..+++.++...|++.+|+..+.+++...|+.+. +...+.
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 45678899999999999999999999999854 456778889999999999999999999999998888 766653
Q ss_pred -cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH---------------------------------------
Q 004426 494 -YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRA--------------------------------------- 533 (754)
Q Consensus 494 -y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~e--------------------------------------- 533 (754)
.+...+|+..|+++++++|++..++..+|.++...++.++
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~ 207 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKE 207 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence 2344899999999999999999999999999887777654
Q ss_pred -------HHHHHHHHHHc---CCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHhcC---CCccccccchhhhHHHH
Q 004426 534 -------AISEIDRIIVF---KLSVDCLEL-----RAWLFIAADDYESALRDTLALLALE---SNYMMFHGRVSGDHLVK 595 (754)
Q Consensus 534 -------Al~~~~rAl~l---~p~~~~~~~-----ra~~~~~lgd~~~Al~d~~~al~l~---P~~~~~~~~~~~~~~~~ 595 (754)
|++.++++++. +|+....+. +..++...|++++|++.|+++++.+ |++... ..+
T Consensus 208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~--------~la 279 (765)
T PRK10049 208 RYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQR--------WVA 279 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHH--------HHH
Confidence 44455555544 232111111 2334678899999999999999986 544221 112
Q ss_pred HHhhhhccccchh-------------------hhhhhhhccccccccc-hHHHHHHHHHcCCCC---------------h
Q 004426 596 LLNHHVRSWSPAD-------------------CWIKLYDRWSSVDDIG-SLAVINQMLINDPGK---------------S 640 (754)
Q Consensus 596 ~l~~~~~~~~~A~-------------------~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~---------------~ 640 (754)
.+....+++++|. .+..++..+...++++ |+..++++++.+|.. .
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 2222222333332 2233333333446666 788999999998832 4
Q ss_pred hHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhc
Q 004426 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILAD 719 (754)
Q Consensus 641 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~ 719 (754)
.++..+|.++...|++++|+..++++++..|++++++..+|.++...|++++|++.+++|++++|++. ..+.+|++..+
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999976 88888887665
Q ss_pred cCCCCCchhHHHHHHHHHhcC
Q 004426 720 TNLDPESSTYVIQLLEEALRC 740 (754)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~ 740 (754)
.. .-.....+++++++-
T Consensus 440 ~~----~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 440 LQ----EWRQMDVLTDDVVAR 456 (765)
T ss_pred hC----CHHHHHHHHHHHHHh
Confidence 44 244445555555543
No 27
>PLN02789 farnesyltranstransferase
Probab=99.79 E-value=1.1e-17 Score=181.05 Aligned_cols=195 Identities=12% Similarity=0.078 Sum_probs=160.0
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCH--HHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEG-QIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDY--ESALRDTLA 573 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg-~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~--~~Al~d~~~ 573 (754)
.+|+..+++||+++|++..+|.+||.++..+| ++++|+..++++++.+|+ +.+|+.|++++..+|+. ++++..+++
T Consensus 54 erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~k 133 (320)
T PLN02789 54 PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRK 133 (320)
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHH
Confidence 78888889999999999999999999999998 579999999999999995 78899999988888874 788888999
Q ss_pred HHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHc
Q 004426 574 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL 653 (754)
Q Consensus 574 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~l 653 (754)
++++||++. .+...++-+......|+++ +..++++|+.||.+..+|+++|.++..+
T Consensus 134 al~~dpkNy------~AW~~R~w~l~~l~~~~ee------------------L~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 134 ILSLDAKNY------HAWSHRQWVLRTLGGWEDE------------------LEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHhCcccH------HHHHHHHHHHHHhhhHHHH------------------HHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 999999883 3444444444444444444 8899999999999999999999999887
Q ss_pred ---CCH----HHHHHHHHHHHhcCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChH---HHHHHHHH
Q 004426 654 ---NCQ----KAAMRCLRLARNHSSSEHERLVYEGWILYD----TGHREEALSRAEKSISIERTFE---AFFLKAYI 716 (754)
Q Consensus 654 ---g~~----eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~----~G~~eeAl~~~e~Ai~l~~~~~---a~~~~~~~ 716 (754)
|.. ++++....+++.++|+|..+++|+|+++.. +++..+|+...++++..+|... +|.+.-|.
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 333 478888889999999999999999999988 5677889999999999887654 55555554
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=1.3e-17 Score=194.43 Aligned_cols=226 Identities=10% Similarity=-0.001 Sum_probs=161.5
Q ss_pred CHHHHHHHHHHHHHccCCCHHHHHHhhh-------cCC------hhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Q 004426 466 QQYSAYKLINSIISEHKPTGWMYQERSL-------YNL------GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIR 532 (754)
Q Consensus 466 ~~~~A~~~~~~aI~~~~~~g~ay~~r~~-------y~~------g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~ 532 (754)
...+|+..+.++++.+|+++.+|...+. .+. ..+|...+++|+++||+++.+|..+|.++..+|+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 4567888888888888887776655542 111 267888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhh
Q 004426 533 AAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWI 611 (754)
Q Consensus 533 eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~ 611 (754)
+|+..|++|++++|+ +..++.+|.++...|++++|+..|+++++++|++.. +......+.....++++
T Consensus 356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~------~~~~~~~~~~~~g~~ee----- 424 (553)
T PRK12370 356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA------AGITKLWITYYHTGIDD----- 424 (553)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh------hHHHHHHHHHhccCHHH-----
Confidence 888888888888886 677788888888888888888888888888888632 11111111111222222
Q ss_pred hhhhccccccccchHHHHHHHHHcC-CCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCH
Q 004426 612 KLYDRWSSVDDIGSLAVINQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHR 690 (754)
Q Consensus 612 ~l~~~~~~~~d~~al~~~~~aL~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~ 690 (754)
|+..++++++.. |+++.++.++|.++..+|++++|.+.+++++...|++..+...++.++...|+
T Consensus 425 -------------A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 490 (553)
T PRK12370 425 -------------AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE- 490 (553)
T ss_pred -------------HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH-
Confidence 477788888764 77888888888888888888888888888888888888888888888777774
Q ss_pred HHHHHHHHHHHh---cCCChHHHHHHHHHh
Q 004426 691 EEALSRAEKSIS---IERTFEAFFLKAYIL 717 (754)
Q Consensus 691 eeAl~~~e~Ai~---l~~~~~a~~~~~~~~ 717 (754)
+|.+.+++.++ ..+....+.-.-|++
T Consensus 491 -~a~~~l~~ll~~~~~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 491 -RALPTIREFLESEQRIDNNPGLLPLVLVA 519 (553)
T ss_pred -HHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence 55554444433 344433333333433
No 29
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=9.4e-18 Score=180.59 Aligned_cols=234 Identities=12% Similarity=-0.025 Sum_probs=163.1
Q ss_pred chHHHHHHHHHHhhh---cc---hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc----CChhhHHHH
Q 004426 434 EYKDACYYFEAAADA---GH---IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVD 503 (754)
Q Consensus 434 ~~~eA~~~f~~AL~~---~~---~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y----~~g~eAl~d 503 (754)
+.+.++..+.++|.. ++ ...++.+|.++...|++.+|+..|.++++.+|+.+.+|..+|.+ +..++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 445555566665542 11 23455566666666666666666666666666666666666532 233888999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcc
Q 004426 504 LNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL-ESNYM 582 (754)
Q Consensus 504 l~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l-~P~~~ 582 (754)
|++|++++|++..+|.++|.++...|++++|+.+|+++++++|+.........+....+++++|+..|++++.. +|+..
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~ 200 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQW 200 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcccc
Confidence 99999999999999999999999999999999999999999996332222223456788999999999877654 44431
Q ss_pred ccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHH
Q 004426 583 MFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRC 662 (754)
Q Consensus 583 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~ 662 (754)
+. ........+++.++.+. .+...++++++++|..+++|+++|.++.++|++++|+..
T Consensus 201 ---~~-------~~~~~~lg~~~~~~~~~------------~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~ 258 (296)
T PRK11189 201 ---GW-------NIVEFYLGKISEETLME------------RLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAAL 258 (296)
T ss_pred ---HH-------HHHHHHccCCCHHHHHH------------HHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 11 11111222332221100 012234566788899999999999999999999999999
Q ss_pred HHHHHhcCC-CchhHHHHHHHHHHHcCC
Q 004426 663 LRLARNHSS-SEHERLVYEGWILYDTGH 689 (754)
Q Consensus 663 ~~~Al~l~P-~~~ea~~~~G~~ly~~G~ 689 (754)
|++|++.+| ++.+..+-+..+....++
T Consensus 259 ~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 259 FKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 999999996 888877766665554444
No 30
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.77 E-value=1.3e-18 Score=188.05 Aligned_cols=177 Identities=19% Similarity=0.220 Sum_probs=150.7
Q ss_pred CCCCCCcEEEEECC-----eEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCC
Q 004426 213 SLEEDDSVTFCVRD-----KEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFC 287 (754)
Q Consensus 213 ~~~~~~~V~f~V~g-----~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~ 287 (754)
+|+...+|.|+||+ +.|||||.|||..|++|.+||+|++.|+...+|.+ +++.|.+|..+|+|||++.+. +.
T Consensus 110 ~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~l--pdvepaaFl~~L~flYsdev~-~~ 186 (521)
T KOG2075|consen 110 NNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRL--PDVEPAAFLAFLRFLYSDEVK-LA 186 (521)
T ss_pred cCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeec--CCcChhHhHHHHHHHhcchhh-hh
Confidence 44555569999973 58999999999999999999999999997789999 999999999999999999999 99
Q ss_pred hhHHHHHHHHhchhChhhHHHHHHHHHHhhcCCHhhHHHHHH-HhhhhchHHHHHHHHHHHHhhhhhhcCchhhhhhccC
Q 004426 288 PGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILID-YGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCS 366 (754)
Q Consensus 288 ~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~~~n~l~il~-~A~~~~~~~L~~~cl~~i~~n~~~vl~~e~f~~Ll~~ 366 (754)
.++++.+|.+|++|.++.|.+.|.+||+..+. ..|.+..+- .|..++-++|.+.|++.|..++.+.+..|.|.++-+.
T Consensus 187 ~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~-~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did~~ 265 (521)
T KOG2075|consen 187 ADTVITTLYAAKKYLVPALERQCVKFLRKNLM-ADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDIDST 265 (521)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehhhH
Confidence 99999999999999999999999999999999 566665555 4999999999999999999999999999999876322
Q ss_pred ------chhhHHHHhcccchhHHHHHHHHHHhhhh
Q 004426 367 ------SEATERLANVGHASFLLYYFLSQVAMEKD 395 (754)
Q Consensus 367 ------~~~~~~l~~v~~~~~~~~a~LswV~~d~~ 395 (754)
...++.+. + .++..+.+.++|+.....
T Consensus 266 ~dt~~evl~r~~l~-~-~e~~lfeA~lkw~~~e~~ 298 (521)
T KOG2075|consen 266 RDTYEEVLRRDTLE-A-REFRLFEAALKWAEAECQ 298 (521)
T ss_pred HHHHHHHHhhcccc-h-hHHHHHHHHHhhccCcch
Confidence 11111111 1 256788999999976543
No 31
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=5.8e-17 Score=181.80 Aligned_cols=260 Identities=15% Similarity=0.105 Sum_probs=214.3
Q ss_pred ccchHHHHHHHHHHhhhc---chhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCC--CHHHHHHhhhcCCh-hhHHHHH-
Q 004426 432 REEYKDACYYFEAAADAG---HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKP--TGWMYQERSLYNLG-REKIVDL- 504 (754)
Q Consensus 432 ~g~~~eA~~~f~~AL~~~---~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~--~g~ay~~r~~y~~g-~eAl~dl- 504 (754)
.=+..+|+..|.+ +-.. -......+|++|+.+++|++|...|+.+=...|- -|.-++...++-.. .-++..+
T Consensus 332 ~y~~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 332 QYNCREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 3345899999998 4332 2245667899999999999999999988777663 12222222222111 1223322
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc
Q 004426 505 NYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMM 583 (754)
Q Consensus 505 ~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~ 583 (754)
...+.-||+.++.|...|+++--+++++.||..|.|||++||+ .-+|.+.|-=+.....+|.|...|++|+.++|.+
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh-- 488 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH-- 488 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh--
Confidence 3578999999999999999999999999999999999999997 5666778888899999999999999999999987
Q ss_pred cccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHH
Q 004426 584 FHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCL 663 (754)
Q Consensus 584 ~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~ 663 (754)
-.|++.+|.+....++++.| .-.|.+|++++|.+.....-.|-.+.++|+-++|++.|
T Consensus 489 ----YnAwYGlG~vy~Kqek~e~A------------------e~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 489 ----YNAWYGLGTVYLKQEKLEFA------------------EFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLY 546 (638)
T ss_pred ----hHHHHhhhhheeccchhhHH------------------HHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHH
Confidence 34555566665566666666 67899999999999999999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHH
Q 004426 664 RLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYI 716 (754)
Q Consensus 664 ~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~ 716 (754)
++|+-++|.|+-..+++|.+|+.+|+++||+..+|+--++.|+-. .|||-|-+
T Consensus 547 ~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki 600 (638)
T KOG1126|consen 547 EKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKI 600 (638)
T ss_pred HHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988 89987754
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=99.76 E-value=5.3e-17 Score=189.34 Aligned_cols=187 Identities=14% Similarity=0.015 Sum_probs=163.8
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEE---------GQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESA 567 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~l---------g~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~A 567 (754)
.+|+..|++|+++||+++.+|.++|.++..+ +++++|+..+++|++++|+ +..+..+|.++...|++++|
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 7899999999999999999999999887744 3489999999999999995 78888899999999999999
Q ss_pred HHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHH
Q 004426 568 LRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQS 647 (754)
Q Consensus 568 l~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g 647 (754)
+..|++|++++|++. .+...++.+....+++++| +..++++++++|.++..++.++
T Consensus 358 ~~~~~~Al~l~P~~~------~a~~~lg~~l~~~G~~~eA------------------i~~~~~Al~l~P~~~~~~~~~~ 413 (553)
T PRK12370 358 SLLFKQANLLSPISA------DIKYYYGWNLFMAGQLEEA------------------LQTINECLKLDPTRAAAGITKL 413 (553)
T ss_pred HHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHH------------------HHHHHHHHhcCCCChhhHHHHH
Confidence 999999999999984 4555566666677777777 7889999999999998888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 648 LLLLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 648 ~~L~~lg~~eeAl~~~~~Al~l~-P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
.++..+|++++|++.++++++.+ |+++.++.++|.++..+|++++|.+.+++.....|...
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~ 475 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGL 475 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhH
Confidence 88888999999999999999875 88899999999999999999999999999888888866
No 33
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.9e-16 Score=174.10 Aligned_cols=89 Identities=12% Similarity=0.142 Sum_probs=56.2
Q ss_pred cccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 621 DDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 699 (754)
Q Consensus 621 ~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~ 699 (754)
+|+. |+..|++||..+|.++.+|-|||.|+.+||.+.+|+++...+++++|+..-++...|.+++.+.+|++|+..|.+
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhcCCChHH
Q 004426 700 SISIERTFEA 709 (754)
Q Consensus 700 Ai~l~~~~~a 709 (754)
++..+|+...
T Consensus 452 ale~dp~~~e 461 (539)
T KOG0548|consen 452 ALELDPSNAE 461 (539)
T ss_pred HHhcCchhHH
Confidence 6666666553
No 34
>PLN02789 farnesyltranstransferase
Probab=99.74 E-value=2.8e-16 Score=170.19 Aligned_cols=222 Identities=14% Similarity=0.063 Sum_probs=171.5
Q ss_pred cchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc--CC---hhhHHHHHHHH
Q 004426 433 EEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY--NL---GREKIVDLNYA 507 (754)
Q Consensus 433 g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y--~~---g~eAl~dl~kA 507 (754)
++|.+|..+|+.++. ..+....|+..++++|..+|.+..++..|+.. .. ..+++..++++
T Consensus 34 ~~~~~a~~~~ra~l~---------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~ 98 (320)
T PLN02789 34 PEFREAMDYFRAVYA---------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDV 98 (320)
T ss_pred HHHHHHHHHHHHHHH---------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence 456666666654333 33456677777777777777777777766531 11 27899999999
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccc
Q 004426 508 SELDPTLSFPYKYRAVAKMEEGQI--RAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMF 584 (754)
Q Consensus 508 i~LdP~~~~ay~~rg~~l~~lg~~--~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~ 584 (754)
++.+|++..+|.+|+.++..+|+. +++++.++++|+++|+ ..+|..|++++..+|++++|+.+++++|++||++.
T Consensus 99 i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~-- 176 (320)
T PLN02789 99 AEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN-- 176 (320)
T ss_pred HHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch--
Confidence 999999999999999999999874 7889999999999995 89999999999999999999999999999999883
Q ss_pred ccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHH----cCCHHHHH
Q 004426 585 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR----LNCQKAAM 660 (754)
Q Consensus 585 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~----lg~~eeAl 660 (754)
.+.+.++.+.........- .. ..-+.+..+.++|.++|.+..+|++++-++.. +++..+|+
T Consensus 177 ----sAW~~R~~vl~~~~~l~~~----------~~-~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 177 ----SAWNQRYFVITRSPLLGGL----------EA-MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred ----hHHHHHHHHHHhccccccc----------cc-cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 3444443332221110000 00 00124778889999999999999999999998 56678899
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHH
Q 004426 661 RCLRLARNHSSSEHERLVYEGWILYD 686 (754)
Q Consensus 661 ~~~~~Al~l~P~~~ea~~~~G~~ly~ 686 (754)
+.+.+++..+|+++.|+-.+.-++..
T Consensus 242 ~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 242 SVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 99999999999999999999998875
No 35
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.73 E-value=4e-16 Score=162.62 Aligned_cols=278 Identities=14% Similarity=0.131 Sum_probs=217.4
Q ss_pred HHHHHhhhhhhHhhccchHHHHHHHHHHhhhcch--hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhh---
Q 004426 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERS--- 492 (754)
Q Consensus 418 ka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~--~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~--- 492 (754)
..++++.++.+|+..|+-.-|+.++.+.|+++|. .+-...|.++..+|.++.|..+|+.++.-.|+.+...-...
T Consensus 71 ~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~ 150 (504)
T KOG0624|consen 71 NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLA 150 (504)
T ss_pred hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 3568899999999999999999999999999664 35566788999999999999999999998886544332211
Q ss_pred --------------hcC--ChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHH
Q 004426 493 --------------LYN--LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRA 555 (754)
Q Consensus 493 --------------~y~--~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra 555 (754)
-++ ....++...++.++..|=++..|..|+.+|...|+...||.|++.|-+|..+ .+.++.-.
T Consensus 151 ~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis 230 (504)
T KOG0624|consen 151 LIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKIS 230 (504)
T ss_pred hHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHH
Confidence 122 2278899999999999999999999999999999999999999999999885 78888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccc-cccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHH
Q 004426 556 WLFIAADDYESALRDTLALLALESNYMM-FHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI 634 (754)
Q Consensus 556 ~~~~~lgd~~~Al~d~~~al~l~P~~~~-~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~ 634 (754)
.+++..||.+.++...+..|++||++.. |-.-.........+..+.+-.++-+ | .+.++-.+..+.
T Consensus 231 ~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~-~------------t~cle~ge~vlk 297 (504)
T KOG0624|consen 231 QLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKH-W------------TECLEAGEKVLK 297 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhh-H------------HHHHHHHHHHHh
Confidence 9999999999999999999999999753 1111122222222222221111110 1 113667888899
Q ss_pred cCCCChhHHHh----HHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 635 NDPGKSFLRFR----QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 635 l~P~~~~~~~~----~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
.+|.-+...+| .-.|.-.-+.+.||++-...+|+.+|++++++--++.++...-.||.|+..|++|.+.++|..
T Consensus 298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 298 NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 99986655443 333455578889999999999999999999999999999999999999999999999999876
No 36
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.71 E-value=1.9e-15 Score=152.43 Aligned_cols=186 Identities=15% Similarity=0.061 Sum_probs=143.8
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
++|+..++++++.+|++..++..+|.++..+|++++|+..|++++++.|+ +..+.+.+.++...|++++|+..|+++++
T Consensus 48 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 67777778888888888899999999999999999999999999998885 67777888889999999999999999987
Q ss_pred cCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCH
Q 004426 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 656 (754)
Q Consensus 577 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~ 656 (754)
..+.. .........+.+.....++++ |...+++++..+|.++.++..+|.++..+|++
T Consensus 128 ~~~~~----~~~~~~~~l~~~~~~~g~~~~------------------A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 128 DPLYP----QPARSLENAGLCALKAGDFDK------------------AEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred ccccc----cchHHHHHHHHHHHHcCCHHH------------------HHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 54311 111122222222222222222 46778888888888888888889999999999
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 657 KAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 705 (754)
Q Consensus 657 eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~ 705 (754)
++|++.+++++++.|++++.++..+.++...|+.++|....++...+.|
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999888888888888888888888999998888777766543
No 37
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.7e-16 Score=167.74 Aligned_cols=277 Identities=17% Similarity=0.107 Sum_probs=214.6
Q ss_pred HHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcch--hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc
Q 004426 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY 494 (754)
Q Consensus 417 qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~--~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y 494 (754)
+.+.-....|..+...++|.+|+..|..||+..|. ..|.+.+.++...|+++.|.-+..+.+++.+...+.+..-+..
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c 126 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQC 126 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhh
Confidence 33444567899999999999999999999999554 4566778889999999999999999999988776655444332
Q ss_pred CCh----hh------------HHHHHHHHHhhCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHH
Q 004426 495 NLG----RE------------KIVDLNYASELDPTLS------FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCL 551 (754)
Q Consensus 495 ~~g----~e------------Al~dl~kAi~LdP~~~------~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~ 551 (754)
... .+ +...|.+...+-|.+. .+-...+.++..+|++++|+..--+++++++. .+++
T Consensus 127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al 206 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEAL 206 (486)
T ss_pred hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHH
Confidence 111 11 1222333333444443 34455778899999999999999999999995 8999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHH
Q 004426 552 ELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVIN 630 (754)
Q Consensus 552 ~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~ 630 (754)
+.||.++.-.++.+.|+..|++++.++|+... ...+.-....+.....+ ++....-+.+. |-.+|.
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~---sk~~~~~~k~le~~k~~----------gN~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLDPDHQK---SKSASMMPKKLEVKKER----------GNDAFKNGNYRKAYECYT 273 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccChhhhh---HHhHhhhHHHHHHHHhh----------hhhHhhccchhHHHHHHH
Confidence 99999999999999999999999999998732 01111111112111222 22222235555 678999
Q ss_pred HHHHcCCCCh----hHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 631 QMLINDPGKS----FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (754)
Q Consensus 631 ~aL~l~P~~~----~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~ 706 (754)
.||.+||.+. .+|.||+.+..++|+.+||+.+.+.|+.++|..-.|+..+|.|+..++.+++|+++|++|+...-+
T Consensus 274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999875 569999999999999999999999999999999999999999999999999999999999988766
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=9.9e-17 Score=170.90 Aligned_cols=254 Identities=17% Similarity=0.132 Sum_probs=106.0
Q ss_pred hhhhhHhhccchHHHHHHHHHHhhh--cc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc---CC
Q 004426 424 QLGCVMFEREEYKDACYYFEAAADA--GH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY---NL 496 (754)
Q Consensus 424 ~LG~v~~~~g~~~eA~~~f~~AL~~--~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y---~~ 496 (754)
.++.++...|++++|.+.+.+++.. ++ ...+..+|.+....|+++.|...|.+++...+.....+.....+ ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~ 92 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5588889999999999999655433 22 34566678888899999999999999998887655555444332 23
Q ss_pred hhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK--L-SVDCLELRAWLFIAADDYESALRDTLA 573 (754)
Q Consensus 497 g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~--p-~~~~~~~ra~~~~~lgd~~~Al~d~~~ 573 (754)
..+|+..+.++.+-++ ++..+.....++...++++++...++++.... + ++..+..+|.++.+.|+.++|+++|++
T Consensus 93 ~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 93 PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3788888888877664 56777778888999999999999999988765 3 467788899999999999999999999
Q ss_pred HHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHH
Q 004426 574 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLR 652 (754)
Q Consensus 574 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~ 652 (754)
|++++|++.. +.....-+ +-..++.. +...+.+.....|.++.+|...|.++..
T Consensus 172 al~~~P~~~~------~~~~l~~~-------------------li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 226 (280)
T PF13429_consen 172 ALELDPDDPD------ARNALAWL-------------------LIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ 226 (280)
T ss_dssp HHHH-TT-HH------HHHHHHHH-------------------HCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH
T ss_pred HHHcCCCCHH------HHHHHHHH-------------------HHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 9999999732 22211111 11112222 3456677777779999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 653 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
+|++++|+..++++++.+|+|+..+...|.+|...|+.++|++.+++++..
T Consensus 227 lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 227 LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999864
No 39
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.70 E-value=4.4e-14 Score=163.71 Aligned_cols=304 Identities=17% Similarity=0.139 Sum_probs=228.3
Q ss_pred hHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhc---chhhhhhHHHHHHHhCCHHHHHHHHHH
Q 004426 400 TTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG---HIYSLAGLARAKYKVGQQYSAYKLINS 476 (754)
Q Consensus 400 ~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~---~~~a~~~larv~~~~G~~~~A~~~~~~ 476 (754)
.+..+-++++.........+..+|++|..+..+|+|++|..+|..+++.+ +..+++|+|-++...|++..|...|.+
T Consensus 288 ~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEk 367 (1018)
T KOG2002|consen 288 RVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEK 367 (1018)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHH
Confidence 34445444443332222345679999999999999999999999999983 356899999999999999999999999
Q ss_pred HHHccCCCHHHHHHhh-hcCCh-------hhHHHHHHHHHhhCCCChHHH------------------------------
Q 004426 477 IISEHKPTGWMYQERS-LYNLG-------REKIVDLNYASELDPTLSFPY------------------------------ 518 (754)
Q Consensus 477 aI~~~~~~g~ay~~r~-~y~~g-------~eAl~dl~kAi~LdP~~~~ay------------------------------ 518 (754)
+....|++-....-.| +|... +.|...+.++++..|.++.+|
T Consensus 368 v~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~ 447 (1018)
T KOG2002|consen 368 VLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKG 447 (1018)
T ss_pred HHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcC
Confidence 9999987533332222 22211 566667777777777776555
Q ss_pred --------HHHHHHHHHcCCHHHHHHHHHHHHHc-CC--CHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 519 --------KYRAVAKMEEGQIRAAISEIDRIIVF-KL--SVD--------CLELRAWLFIAADDYESALRDTLALLALES 579 (754)
Q Consensus 519 --------~~rg~~l~~lg~~~eAl~~~~rAl~l-~p--~~~--------~~~~ra~~~~~lgd~~~Al~d~~~al~l~P 579 (754)
+|.|..++.+|.+..|...|.+|+.. .| +.+ .-||++.++.++++++.|...|..+++..|
T Consensus 448 ~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp 527 (1018)
T KOG2002|consen 448 KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP 527 (1018)
T ss_pred CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence 55666677788888888888888887 21 222 368999999999999999999999999999
Q ss_pred Cccccccchh----------------------------hhHHHHHHhhhhccccchh-----------------hhhhhh
Q 004426 580 NYMMFHGRVS----------------------------GDHLVKLLNHHVRSWSPAD-----------------CWIKLY 614 (754)
Q Consensus 580 ~~~~~~~~~~----------------------------~~~~~~~l~~~~~~~~~A~-----------------~~~~l~ 614 (754)
.|+..+-|.+ +..+.|.+......|-.|. ..++++
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence 9998665553 3444443333333333321 223333
Q ss_pred hc-------ccccc-----ccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q 004426 615 DR-------WSSVD-----DIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEG 681 (754)
Q Consensus 615 ~~-------~~~~~-----d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G 681 (754)
.. |++.+ -+. |++.|.++|..+|.|..+=+..|.+|..-|++.+|...|.+.++--.++.+++.|+|
T Consensus 608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNla 687 (1018)
T KOG2002|consen 608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLA 687 (1018)
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHH
Confidence 32 22222 122 788999999999999999999999999999999999999999998888899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc
Q 004426 682 WILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 682 ~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
.|+..+|+|-.|++.|+..++.
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998886
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4.4e-15 Score=163.84 Aligned_cols=268 Identities=13% Similarity=0.062 Sum_probs=210.2
Q ss_pred hHhhccchHHHHHHHHHHhhhcchh---hhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcC----ChhhH
Q 004426 428 VMFEREEYKDACYYFEAAADAGHIY---SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN----LGREK 500 (754)
Q Consensus 428 v~~~~g~~~eA~~~f~~AL~~~~~~---a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~----~g~eA 500 (754)
-+..+.++.+-.+.++..++..|-. ....+| .++.+|+...=+..-.+.+..+|+.+..|+.-|.|. ...+|
T Consensus 253 ~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seA 331 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEA 331 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHH
Confidence 3445667888888888877774322 223344 677888877777777888999998777776666532 33889
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 501 IVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALES 579 (754)
Q Consensus 501 l~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P 579 (754)
...|.||..+||++..+|...|.++.-+|..++|++.|.+|-++=|. ..-....|.=|..++.++-|...|.+|+.+.|
T Consensus 332 Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P 411 (611)
T KOG1173|consen 332 RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP 411 (611)
T ss_pred HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999998774 11123467778889999999999999999999
Q ss_pred CccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHH----HcCCCC---hhHHHhHHHHHHH
Q 004426 580 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML----INDPGK---SFLRFRQSLLLLR 652 (754)
Q Consensus 580 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL----~l~P~~---~~~~~~~g~~L~~ 652 (754)
++ .-..+..+.+.-.-+.|.+| +..+..++ +..+.. .-.+.|+|.++-+
T Consensus 412 ~D------plv~~Elgvvay~~~~y~~A------------------~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 412 SD------PLVLHELGVVAYTYEEYPEA------------------LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred Cc------chhhhhhhheeehHhhhHHH------------------HHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 87 34555566555555566666 34444444 223333 2458899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhcc
Q 004426 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILADT 720 (754)
Q Consensus 653 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~~ 720 (754)
+|+++||+..|++||.+.|.+++.|-..|.++..+|++|.|+..|.+|+.|+|+.+ +==+.+.+++|+
T Consensus 468 l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~ 536 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDS 536 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999997 666666888884
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.7e-14 Score=151.84 Aligned_cols=254 Identities=17% Similarity=0.115 Sum_probs=192.5
Q ss_pred hhhhhHhhccchHHHHHHHHHHhhhcc---hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccC-CCHHHHH-HhhhcCChh
Q 004426 424 QLGCVMFEREEYKDACYYFEAAADAGH---IYSLAGLARAKYKVGQQYSAYKLINSIISEHK-PTGWMYQ-ERSLYNLGR 498 (754)
Q Consensus 424 ~LG~v~~~~g~~~eA~~~f~~AL~~~~---~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~-~~g~ay~-~r~~y~~g~ 498 (754)
-++.++.+....+++..-+.+.+..+. .+.....|.+.+.+.++++|+..|+.+...+| .++.+-. ...+|...+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 355666666677888887777777643 34455667788999999999999999888776 3333321 112222222
Q ss_pred -hHHHHH-HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 499 -EKIVDL-NYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALL 575 (754)
Q Consensus 499 -eAl~dl-~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al 575 (754)
.++..+ ..+...|.--++.---.|+-|--.++++.|+..|+||++|||+ ..+|.+-|-=|.++++-..|+..|++|+
T Consensus 312 ~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 222222 3455666666666667777777788888888888888888886 5677777777888888888888888888
Q ss_pred hcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcC
Q 004426 576 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLN 654 (754)
Q Consensus 576 ~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg 654 (754)
+++|.+ ..+|..+++....++=.. ||-.|.+|+++-|+++..|.-+|.|+.++|
T Consensus 392 di~p~D-------------------------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~ 446 (559)
T KOG1155|consen 392 DINPRD-------------------------YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLN 446 (559)
T ss_pred hcCchh-------------------------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhc
Confidence 888865 344555555544444333 677889999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 655 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (754)
Q Consensus 655 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~ 702 (754)
+.+||+.+|.+|+...-.++.+++.+|.++-.+++.+||-+.|++=+.
T Consensus 447 ~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 447 RLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.68 E-value=6.1e-15 Score=148.63 Aligned_cols=198 Identities=14% Similarity=0.041 Sum_probs=161.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhH
Q 004426 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDH 592 (754)
Q Consensus 514 ~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~ 592 (754)
.+..+.++|.++...|++++|+..++++++.+|+ ...+..++.++..+|++++|+..|+++++++|++. .+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~ 103 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG------DVLN 103 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHH
Confidence 3788999999999999999999999999999996 77888899999999999999999999999999873 2333
Q ss_pred HHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcC--CCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 593 LVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND--PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS 670 (754)
Q Consensus 593 ~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~--P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~ 670 (754)
..+.+.....++++ |+..+++++... |.....+.++|.++..+|++++|...++++++.+
T Consensus 104 ~~~~~~~~~g~~~~------------------A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 104 NYGTFLCQQGKYEQ------------------AMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHHHHHHHcccHHH------------------HHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33333333334444 477888988854 6677899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhccCCCCCchhHHHHHHH
Q 004426 671 SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLE 735 (754)
Q Consensus 671 P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (754)
|++++++..+|.+++..|++++|+..+++++.+.|+..........+....=|++......+.++
T Consensus 166 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 166 PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988766333333344444455555544444443
No 43
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.67 E-value=1.3e-16 Score=145.48 Aligned_cols=101 Identities=30% Similarity=0.372 Sum_probs=90.7
Q ss_pred CCCCCcEEEEEC-CeEEehhhHHHhhcCHHHHHhhcCC-CCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCC-hhH
Q 004426 214 LEEDDSVTFCVR-DKEISFVRNKIASLSSPFKAMLYGG-FVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFC-PGI 290 (754)
Q Consensus 214 ~~~~~~V~f~V~-g~~f~aHR~iLaa~S~yF~aMf~~~-~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~-~~~ 290 (754)
++...+|+|.|+ +++|+|||.||+++|+||+.||.++ +.++...+|.+ +++++++|+.+++|+|+|++. ++ .++
T Consensus 7 ~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~l~~~Y~~~~~-~~~~~~ 83 (111)
T PF00651_consen 7 SNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISL--PDVSPEAFEAFLEYMYTGEIE-INSDEN 83 (111)
T ss_dssp HTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEE--TTSCHHHHHHHHHHHHHSEEE-EE-TTT
T ss_pred CCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccc--ccccccccccccccccCCccc-CCHHHH
Confidence 345556999999 8999999999999999999999998 67777678999 999999999999999999998 77 999
Q ss_pred HHHHHHHhchhChhhHHHHHHHHHHhh
Q 004426 291 VLELLSFANRFCCEEMKSACDAHLASL 317 (754)
Q Consensus 291 vlelL~aA~~f~l~~Lk~~Ce~~L~~~ 317 (754)
+.+++.+|++|+++.|+..|+.+|.+.
T Consensus 84 ~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 84 VEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999864
No 44
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=3.5e-15 Score=165.34 Aligned_cols=234 Identities=17% Similarity=0.138 Sum_probs=167.1
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
.+|.-.|+.|+.-||.+++||..+|.+..+.++-..||..+.|+++++|+ .+++..+|..|.-.|--.+|+..+.+=|+
T Consensus 302 ~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~ 381 (579)
T KOG1125|consen 302 SEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIR 381 (579)
T ss_pred hHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 56666677777777777777777777777777777777777777777774 56666677777777777777777777777
Q ss_pred cCCCcccccc-----c-------hh---hhHHHHH-Hhhhhccc--cchhhhhhhhhccccccccc-hHHHHHHHHHcCC
Q 004426 577 LESNYMMFHG-----R-------VS---GDHLVKL-LNHHVRSW--SPADCWIKLYDRWSSVDDIG-SLAVINQMLINDP 637 (754)
Q Consensus 577 l~P~~~~~~~-----~-------~~---~~~~~~~-l~~~~~~~--~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P 637 (754)
-.|.|..... . .. .....+. ++...+.- ..+|....|+.-..-.++|+ |+.||+.||...|
T Consensus 382 ~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P 461 (579)
T KOG1125|consen 382 NKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP 461 (579)
T ss_pred hCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC
Confidence 7766643111 0 00 1111111 11222222 23333333333333345555 6999999999999
Q ss_pred CChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q 004426 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYIL 717 (754)
Q Consensus 638 ~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~ 717 (754)
++..+|+++|-.|..-++-+||+..|++|++|.|.+..+.||+|.....+|.|+||+..|=.||.|++..- .-
T Consensus 462 nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~-------~~ 534 (579)
T KOG1125|consen 462 NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR-------NH 534 (579)
T ss_pred chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc-------cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998622 11
Q ss_pred hccCCCCCchhHHHHHHHHHhcCC
Q 004426 718 ADTNLDPESSTYVIQLLEEALRCP 741 (754)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~ 741 (754)
.|. |..|..+++-|.-||.|-
T Consensus 535 ~~~---~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 535 NKA---PMASENIWQTLRLALSAM 555 (579)
T ss_pred ccC---CcchHHHHHHHHHHHHHc
Confidence 221 233788888888888763
No 45
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.65 E-value=6.7e-14 Score=162.21 Aligned_cols=328 Identities=14% Similarity=0.077 Sum_probs=242.3
Q ss_pred hhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc---hhhhhhHHHHHHHhCCHHHHHHHHH
Q 004426 399 NTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH---IYSLAGLARAKYKVGQQYSAYKLIN 475 (754)
Q Consensus 399 ~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~---~~a~~~larv~~~~G~~~~A~~~~~ 475 (754)
+.+...|...++-.++ ...++...+++.+..|+|-.|..+|.+|+.++| ++.-.|+|-+...+|..+.|...+.
T Consensus 147 ~~A~a~F~~Vl~~sp~---Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPD---NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHhhCCc---chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 3444444444432232 356677777888999999999999999999865 3556778888889999999999999
Q ss_pred HHHHccCCCHHHHHHhhhcCC-------hhhHHHHHHHHHhhCCCCh---------------------------------
Q 004426 476 SIISEHKPTGWMYQERSLYNL-------GREKIVDLNYASELDPTLS--------------------------------- 515 (754)
Q Consensus 476 ~aI~~~~~~g~ay~~r~~y~~-------g~eAl~dl~kAi~LdP~~~--------------------------------- 515 (754)
+++.++|....++...+.+.. ...|...+.+|...+|.++
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 999999988777776664321 1678888888888888885
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchh
Q 004426 516 ----FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV--DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (754)
Q Consensus 516 ----~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~--~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~ 589 (754)
+.++.+|-++..+|+|++|...|-.+++.+|+. -.++..|..++..|++++|+..|+++++..|++..
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e------ 377 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE------ 377 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH------
Confidence 446666777777777777777777777777753 22344666777777777777777777777776643
Q ss_pred hhHHHHHHhhhh-------------------ccccchhhhhhhhhccccccccchHHHHHHHHHc-----CCCChhHHHh
Q 004426 590 GDHLVKLLNHHV-------------------RSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN-----DPGKSFLRFR 645 (754)
Q Consensus 590 ~~~~~~~l~~~~-------------------~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l-----~P~~~~~~~~ 645 (754)
+...+|.+.... .....+++|+.+..-|-.-|-..+|..|..|+.+ .+--++..+|
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 222222222222 2356677888888887777777788899998832 3566788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----CCCch-----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHH
Q 004426 646 QSLLLLRLNCQKAAMRCLRLARNH-----SSSEH-----ERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKA 714 (754)
Q Consensus 646 ~g~~L~~lg~~eeAl~~~~~Al~l-----~P~~~-----ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~ 714 (754)
.|.....+|.++.|...+..|+.. +++.+ -..||++.++-.++++++|-..|...+...|+|. +|.-+|
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh
Confidence 999999999999999999999987 33332 2479999999999999999999999999999999 777776
Q ss_pred HHhhccCCCCCchhHHHHHHH
Q 004426 715 YILADTNLDPESSTYVIQLLE 735 (754)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~ 735 (754)
--.-|.+-+++.|.-+-+.|+
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHh
Confidence 444488888888765554443
No 46
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.65 E-value=1.8e-15 Score=145.68 Aligned_cols=124 Identities=13% Similarity=0.046 Sum_probs=89.1
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 503 DLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 503 dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
.|++|+++||++ +.++|.++..+|++++|+..|++++.++|+ +..+..+|.++..+|++++|+..|+++++++|++
T Consensus 15 ~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 15 ILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 467777777764 456777777777777777777777777774 6666777777777777777777666666666544
Q ss_pred cccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHH
Q 004426 582 MMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMR 661 (754)
Q Consensus 582 ~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~ 661 (754)
+.+++++|.++.++|++++|+.
T Consensus 92 ----------------------------------------------------------~~a~~~lg~~l~~~g~~~eAi~ 113 (144)
T PRK15359 92 ----------------------------------------------------------PEPVYQTGVCLKMMGEPGLARE 113 (144)
T ss_pred ----------------------------------------------------------cHHHHHHHHHHHHcCCHHHHHH
Confidence 4567777777777777777777
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHc
Q 004426 662 CLRLARNHSSSEHERLVYEGWILYDT 687 (754)
Q Consensus 662 ~~~~Al~l~P~~~ea~~~~G~~ly~~ 687 (754)
.|++|++++|++++.+.++|+++..+
T Consensus 114 ~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 114 AFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 77777777777777777777776544
No 47
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.64 E-value=2.9e-15 Score=144.21 Aligned_cols=125 Identities=12% Similarity=-0.008 Sum_probs=109.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhh
Q 004426 535 ISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLY 614 (754)
Q Consensus 535 l~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~ 614 (754)
.+.|++|++++|+. ++.+|.++..+|++++|+..|++++.++|+
T Consensus 13 ~~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---------------------------------- 56 (144)
T PRK15359 13 EDILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPW---------------------------------- 56 (144)
T ss_pred HHHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------------------------
Confidence 35688888888864 556788888888888888777666666665
Q ss_pred hccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHH
Q 004426 615 DRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 694 (754)
Q Consensus 615 ~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 694 (754)
++.+|+++|.++.++|++++|+..|++|++++|+++++++++|.++..+|++++|+
T Consensus 57 ------------------------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi 112 (144)
T PRK15359 57 ------------------------SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAR 112 (144)
T ss_pred ------------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChH-HHHHHHHHhhc
Q 004426 695 SRAEKSISIERTFE-AFFLKAYILAD 719 (754)
Q Consensus 695 ~~~e~Ai~l~~~~~-a~~~~~~~~~~ 719 (754)
..|++|++++|++. ++.+||-++..
T Consensus 113 ~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 113 EAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 99999999999987 88899887653
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=1.8e-13 Score=153.94 Aligned_cols=285 Identities=11% Similarity=0.019 Sum_probs=213.4
Q ss_pred HHHHHhhhhhhHhhccchHHHHHHHHHHhhhcch--hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHH-HHHHhhh-
Q 004426 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGW-MYQERSL- 493 (754)
Q Consensus 418 ka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~--~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~-ay~~r~~- 493 (754)
++......|...+..|+++.|.+...++.+..+. ..+...|++...+|+++.|...+.++.+..|+.+. +...+..
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 4555567899999999999999999998887443 34455688899999999999999999888776542 2211111
Q ss_pred ---cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHH-HHHHHH---HHHcCCHH
Q 004426 494 ---YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCL-ELRAWL---FIAADDYE 565 (754)
Q Consensus 494 ---y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~-~~ra~~---~~~lgd~~ 565 (754)
.+..+.|...++++.+.+|+++.++...+.++.++|++++|+..+.+.++..+ ++..+ ..+..+ +...++.+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 12338999999999999999999999999999999999999999999998855 33322 222222 24555666
Q ss_pred HHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHH--
Q 004426 566 SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR-- 643 (754)
Q Consensus 566 ~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~-- 643 (754)
++...+.++.+..|+.. -.+..+......+....++.++ |+..+++++...|.+....
T Consensus 243 ~~~~~L~~~~~~~p~~~--~~~~~l~~~~a~~l~~~g~~~~------------------A~~~l~~~l~~~pd~~~~~~~ 302 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHR--RHNIALKIALAEHLIDCDDHDS------------------AQEIIFDGLKKLGDDRAISLP 302 (409)
T ss_pred cCHHHHHHHHHHCCHHH--hCCHHHHHHHHHHHHHCCChHH------------------HHHHHHHHHhhCCCcccchhH
Confidence 67778888998888420 0112233333333333333333 5889999999999998642
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCChHHHHHHHHHhhc
Q 004426 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEH--ERLVYEGWILYDTGHREEALSRAE--KSISIERTFEAFFLKAYILAD 719 (754)
Q Consensus 644 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~--ea~~~~G~~ly~~G~~eeAl~~~e--~Ai~l~~~~~a~~~~~~~~~~ 719 (754)
.-+.......++.++++..++++++..|+++ ..+..+||+++.+|++++|...+| ++++++|+.+.+...|-++..
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 3344444556889999999999999999999 899999999999999999999999 688899999987777777766
Q ss_pred cCC
Q 004426 720 TNL 722 (754)
Q Consensus 720 ~~~ 722 (754)
..-
T Consensus 383 ~g~ 385 (409)
T TIGR00540 383 AGD 385 (409)
T ss_pred cCC
Confidence 543
No 49
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.64 E-value=8.1e-16 Score=148.94 Aligned_cols=142 Identities=21% Similarity=0.315 Sum_probs=120.8
Q ss_pred CCCCcEEEEEC---CeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCC-CChhH
Q 004426 215 EEDDSVTFCVR---DKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL-FCPGI 290 (754)
Q Consensus 215 ~~~~~V~f~V~---g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~-i~~~~ 290 (754)
..+|+|+|.++ ++.|+|||.|||+||++++ |.++-.|.+ .+..+ .|+++++|..+++||||++++. ...+.
T Consensus 64 ~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~deks-e~~~~--dDad~Ea~~t~iRWIYTDEidfk~dD~~ 138 (280)
T KOG4591|consen 64 EQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKS-EELDL--DDADFEAFHTAIRWIYTDEIDFKEDDEF 138 (280)
T ss_pred ccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcch-hhhcc--cccCHHHHHHhheeeeccccccccchHH
Confidence 34456999998 5789999999999999874 333333432 35566 7999999999999999999984 34566
Q ss_pred HHHHHHHhchhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCchhhhhh
Q 004426 291 VLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 363 (754)
Q Consensus 291 vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~e~f~~L 363 (754)
+++++.+|+.|+++.|+..|++-+...++ ++||+.++++|+..++.+|...|-..|..+++++ ..+.|.++
T Consensus 139 L~el~e~An~FqLe~Lke~C~k~l~a~l~-V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL-~~a~FaqM 209 (280)
T KOG4591|consen 139 LLELCELANRFQLELLKERCEKGLGALLH-VDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDL-GKADFAQM 209 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhh-HhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-ChHHHHhc
Confidence 89999999999999999999999999999 9999999999999999999999999999999984 44566554
No 50
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=4.8e-15 Score=153.91 Aligned_cols=238 Identities=13% Similarity=0.049 Sum_probs=207.3
Q ss_pred hhhhhHhhccchHHHHHHHHHHhhh-cchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCH-------HHHHHhhhcC
Q 004426 424 QLGCVMFEREEYKDACYYFEAAADA-GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTG-------WMYQERSLYN 495 (754)
Q Consensus 424 ~LG~v~~~~g~~~eA~~~f~~AL~~-~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g-------~ay~~r~~y~ 495 (754)
++|..|+..|-+.+|.+.++.+++. ++.+....++++|.+..++..|...+...+...|..- .++...+.+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~- 306 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ- 306 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH-
Confidence 5899999999999999999999988 6788889999999999999999999999999998643 334444445
Q ss_pred ChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 496 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLAL 574 (754)
Q Consensus 496 ~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd~~~Al~d~~~a 574 (754)
++|++.|..+++++|.+.++.-..|.-|.--++.+-|+-.|+|+|++-. +++.+.+.|.++..-+++|-++..|++|
T Consensus 307 --~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 307 --EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred --HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999977 5898899999999999999999999999
Q ss_pred HhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHc
Q 004426 575 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRL 653 (754)
Q Consensus 575 l~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~l 653 (754)
+...-+. -+.||.|.+++...-..+|+- |-.+++-||..||+++++++|+|.+-.+-
T Consensus 385 lstat~~----------------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 385 LSTATQP----------------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred HhhccCc----------------------chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 9876542 245888888888887777777 55688888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 004426 654 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYD 686 (754)
Q Consensus 654 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~ 686 (754)
|+.++|...++.|-.++|+-.|..+|+|.+-..
T Consensus 443 G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s~~ 475 (478)
T KOG1129|consen 443 GDILGARSLLNAAKSVMPDMAEVTTNLQFMSVH 475 (478)
T ss_pred CchHHHHHHHHHhhhhCccccccccceeEEeee
Confidence 888888888888888888888888888765433
No 51
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.61 E-value=2.8e-15 Score=158.75 Aligned_cols=177 Identities=15% Similarity=0.089 Sum_probs=150.0
Q ss_pred CCCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEE--ecCCCCCHHHHHHHHHHhhcCCCCCCChhH
Q 004426 213 SLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTID--FSHDGVSVEGLRAVEVYTRTSRVDLFCPGI 290 (754)
Q Consensus 213 ~~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~--l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~ 290 (754)
+.++.++|.+..=|++.+.||.-| ..|+||++||+|.++|+++..|. |.++.|+..+|..++.-+|.++++ |..+.
T Consensus 65 ~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve-I~l~d 142 (488)
T KOG4682|consen 65 LQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE-IKLSD 142 (488)
T ss_pred hcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee-ccHHH
Confidence 345556799999999999999999 78999999999999999998554 567789999999999999999999 99999
Q ss_pred HHHHHHHhchhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCchhhhhh-------
Q 004426 291 VLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI------- 363 (754)
Q Consensus 291 vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~e~f~~L------- 363 (754)
|..+|++|.++++++|.+.|.+.|...++ ++|++.+++.+..|+...+++.|++++..|+..+....-+.++
T Consensus 143 v~gvlAaA~~lqldgl~qrC~evMie~ls-pkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~~Lm~~ 221 (488)
T KOG4682|consen 143 VVGVLAAACLLQLDGLIQRCGEVMIETLS-PKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISINLMKQ 221 (488)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcC-hhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCHHHHHH
Confidence 99999999999999999999999999999 9999999999999999999999999999999998876654443
Q ss_pred -ccCchhhHHHHhcccchhHHHHHHHHHHhhhhc
Q 004426 364 -FCSSEATERLANVGHASFLLYYFLSQVAMEKDR 396 (754)
Q Consensus 364 -l~~~~~~~~l~~v~~~~~~~~a~LswV~~d~~~ 396 (754)
+.|+++- ....+..++-....|+-+....
T Consensus 222 ll~SpnLf----vmq~EfdLyttlk~WmfLql~p 251 (488)
T KOG4682|consen 222 LLGSPNLF----VMQVEFDLYTTLKKWMFLQLVP 251 (488)
T ss_pred HhCCCCeE----EEEeeehHHHHHHHHHHhhhcc
Confidence 3333331 1222444555777788665433
No 52
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.60 E-value=2.7e-15 Score=129.82 Aligned_cols=89 Identities=33% Similarity=0.432 Sum_probs=84.8
Q ss_pred EEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHhc
Q 004426 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFAN 299 (754)
Q Consensus 220 V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~vlelL~aA~ 299 (754)
|+|.++|+.|++||.+|+++|+||++||.+++.++....|.+ +++++.+|+.+++|+||+++. ++.+++.+++.+|+
T Consensus 2 v~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l--~~~~~~~f~~~l~~ly~~~~~-~~~~~~~~l~~~a~ 78 (90)
T smart00225 2 VTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYL--DDVSPEDFRALLEFLYTGKLD-LPEENVEELLELAD 78 (90)
T ss_pred eEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEe--cCCCHHHHHHHHHeecCceee-cCHHHHHHHHHHHH
Confidence 789999999999999999999999999999998887789999 899999999999999999998 88889999999999
Q ss_pred hhChhhHHHHHH
Q 004426 300 RFCCEEMKSACD 311 (754)
Q Consensus 300 ~f~l~~Lk~~Ce 311 (754)
+|+++.|++.|+
T Consensus 79 ~~~~~~l~~~c~ 90 (90)
T smart00225 79 YLQIPGLVELCE 90 (90)
T ss_pred HHCcHHHHhhhC
Confidence 999999999995
No 53
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.59 E-value=6.3e-14 Score=140.50 Aligned_cols=172 Identities=18% Similarity=0.085 Sum_probs=139.7
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCC
Q 004426 485 GWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADD 563 (754)
Q Consensus 485 g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd 563 (754)
|..|.+++.+ ..|..-+++|++.||++..+|.-||.+|+.+|..+-|-+.|++|+.++|+ .+.++|-|+++..+|+
T Consensus 42 al~YL~~gd~---~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 42 ALGYLQQGDY---AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHCCCH---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence 3344444333 67777899999999999999999999999999999999999999999996 7889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHH
Q 004426 564 YESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR 643 (754)
Q Consensus 564 ~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~ 643 (754)
+++|...|++|++ +|.| |..++.|
T Consensus 119 ~~eA~q~F~~Al~-~P~Y-------------------------------------------------------~~~s~t~ 142 (250)
T COG3063 119 PEEAMQQFERALA-DPAY-------------------------------------------------------GEPSDTL 142 (250)
T ss_pred hHHHHHHHHHHHh-CCCC-------------------------------------------------------CCcchhh
Confidence 9999999999986 6877 3335667
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004426 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 715 (754)
Q Consensus 644 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~ 715 (754)
-|.|.|-+++|.+..|...|++|++++|+++.+.-.+.-.+|+.|+|-.|-..+++--.--+-...=.+.|+
T Consensus 143 eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~i 214 (250)
T COG3063 143 ENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGI 214 (250)
T ss_pred hhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHH
Confidence 788888888888888888888888888888888888888888888888888777776655444443344443
No 54
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=4e-13 Score=155.07 Aligned_cols=279 Identities=14% Similarity=0.129 Sum_probs=200.6
Q ss_pred hhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcC----C
Q 004426 423 HQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN----L 496 (754)
Q Consensus 423 ~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~----~ 496 (754)
...++..+-+|++++|++.+..+|+.+| ..++..+|.++..+|+..++....--|-.++|+.-..|...+.+. .
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 3445556677899999999998888855 347778899999999988888888888888887666665554322 2
Q ss_pred hhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHH--H----HHHHHHHHHcCCHHHHHHH
Q 004426 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC--L----ELRAWLFIAADDYESALRD 570 (754)
Q Consensus 497 g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~--~----~~ra~~~~~lgd~~~Al~d 570 (754)
...|.-+|++||.++|.+...+..|+.+|.++|++..|+..|.+++.+.|..+. . ..-+-.+...++-+.|++.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 277888899999999999999999999999999999999999999999883111 0 1112234445555555555
Q ss_pred HHHHHh--------------------------------------cCC---------------Ccc-------ccccch--
Q 004426 571 TLALLA--------------------------------------LES---------------NYM-------MFHGRV-- 588 (754)
Q Consensus 571 ~~~al~--------------------------------------l~P---------------~~~-------~~~~~~-- 588 (754)
+..++. +.| +.. .+--++
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 555444 111 110 011111
Q ss_pred --------hhhHHHHHHhhhhccc-----cchhhhhhhhhccccccccc-hHHHHHHHHHcCCCC-hhHHHhHHHHHHHc
Q 004426 589 --------SGDHLVKLLNHHVRSW-----SPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGK-SFLRFRQSLLLLRL 653 (754)
Q Consensus 589 --------~~~~~~~~l~~~~~~~-----~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~-~~~~~~~g~~L~~l 653 (754)
...++.+.+.+-+... +..+-++++.+.+...+.+. |+..+.+.+...++. +..|.++|.|+..+
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 1222233333332222 23444556666666667777 888888888887754 56899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 654 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (754)
Q Consensus 654 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai 701 (754)
|.+++|+..|.+++.++|++-++...++.+++.+|+.|+|+...++-+
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999998866
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=6.4e-15 Score=156.95 Aligned_cols=243 Identities=15% Similarity=0.065 Sum_probs=109.2
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHHcc--CCCHHHHHHhhh----cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 004426 456 GLARAKYKVGQQYSAYKLINSIISEH--KPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEG 529 (754)
Q Consensus 456 ~larv~~~~G~~~~A~~~~~~aI~~~--~~~g~ay~~r~~----y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg 529 (754)
.+|++++..|++++|+..+.+.+... |+....+...+. ....++|...|++++..+|..+..+.+++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 45888999999999999997766554 344333333332 1233889999999999999999999888888 7999
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCccccccchhhhHHHHHHhhhhccccch
Q 004426 530 QIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALE--SNYMMFHGRVSGDHLVKLLNHHVRSWSPA 607 (754)
Q Consensus 530 ~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~--P~~~~~~~~~~~~~~~~~l~~~~~~~~~A 607 (754)
++++|+..+.++.+-.+++..+.....++...|+++++...++++.... |++ .......+.+.....++++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~a~~~~~~G~~~~- 164 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS------ARFWLALAEIYEQLGDPDK- 164 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-------HHHHHHHHHHHHHCCHHHH-
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC------HHHHHHHHHHHHHcCCHHH-
Confidence 9999999999999877777777666778999999999999999988755 332 2233333333333444444
Q ss_pred hhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHc
Q 004426 608 DCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT 687 (754)
Q Consensus 608 ~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~ 687 (754)
|+.++++||+++|+++.++...+.++..+|+.++|.+.++...+..|+++..+..+|++++.+
T Consensus 165 -----------------A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 165 -----------------ALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp -----------------HHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 489999999999999999999999999999999999999999888899999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhccCCC
Q 004426 688 GHREEALSRAEKSISIERTFE-AFFLKAYILADTNLD 723 (754)
Q Consensus 688 G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~~~~~ 723 (754)
|++++|+..|+++++.+|+.. ....-|.+|.-.+-.
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999655 777888887766543
No 56
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.5e-12 Score=139.15 Aligned_cols=278 Identities=11% Similarity=0.001 Sum_probs=221.8
Q ss_pred HHhhhhhhHhhccchHHHHHHHHHHhhhcch--hhhhhHHHHHHHhCCHHHHHHHHHHHHHcc--CCC-----HHHHHHh
Q 004426 421 ALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEH--KPT-----GWMYQER 491 (754)
Q Consensus 421 Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~--~a~~~larv~~~~G~~~~A~~~~~~aI~~~--~~~-----g~ay~~r 491 (754)
.+-.+|.+++..|++++|+.-|+++..+++- .+.-..|-.+...|+++.--.......... ... +...+.+
T Consensus 234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~ 313 (564)
T KOG1174|consen 234 LMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDE 313 (564)
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhh
Confidence 3456888999999999999999999888652 233445566777888876655555554443 222 2233333
Q ss_pred hhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 004426 492 SLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRD 570 (754)
Q Consensus 492 ~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd~~~Al~d 570 (754)
..| .-|+..-.|+|..||++.++|.-.|.++..+||.++|+-.|+.|+.+.| +.++|..+.-.|++.|++.||..-
T Consensus 314 K~~---~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 314 KKF---ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred hhH---HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHH
Confidence 334 7788888999999999999999999999999999999999999999999 489888888899999999999999
Q ss_pred HHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHH
Q 004426 571 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL 650 (754)
Q Consensus 571 ~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L 650 (754)
-+-+...-|+++ .+..+.| ..+-.++.. .+-.|=..++.+|.++|+...+-..+++++
T Consensus 391 An~~~~~~~~sA------~~LtL~g---~~V~~~dp~-------------~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~ 448 (564)
T KOG1174|consen 391 ANWTIRLFQNSA------RSLTLFG---TLVLFPDPR-------------MREKAKKFAEKSLKINPIYTPAVNLIAELC 448 (564)
T ss_pred HHHHHHHhhcch------hhhhhhc---ceeeccCch-------------hHHHHHHHHHhhhccCCccHHHHHHHHHHH
Confidence 999999999872 3333332 111111111 222244589999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhccCCCCC
Q 004426 651 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPE 725 (754)
Q Consensus 651 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~~~~~~~ 725 (754)
.+-|+.+.++..+++++...||.. .|+.+|.++-.+..+++|+..|..|++++|..++ -+||+-+...+.||.
T Consensus 449 ~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~-sl~Gl~~lEK~~~~~ 521 (564)
T KOG1174|consen 449 QVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR-TLRGLRLLEKSDDES 521 (564)
T ss_pred HhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH-HHHHHHHHHhccCCC
Confidence 999999999999999999999855 8999999999999999999999999999999985 367777666665543
No 57
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.8e-13 Score=145.56 Aligned_cols=257 Identities=13% Similarity=0.102 Sum_probs=204.8
Q ss_pred hhhhhHhhccchHHHHHHHHHHhhhcch--hhhhhHHHHHHHhCCHHHHHHHHHHH--HHc-cCC----CHHHHHHhhhc
Q 004426 424 QLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSI--ISE-HKP----TGWMYQERSLY 494 (754)
Q Consensus 424 ~LG~v~~~~g~~~eA~~~f~~AL~~~~~--~a~~~larv~~~~G~~~~A~~~~~~a--I~~-~~~----~g~ay~~r~~y 494 (754)
+.|.+...+.++++|+..|+...+.+|- .-..-..++++-+.+...-......+ |.. +|. .|.-|.-|+..
T Consensus 267 ~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 267 QIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEH 346 (559)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhH
Confidence 4566777788999999999987766431 11112334444444322111111222 222 232 46666666555
Q ss_pred CChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 495 NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLA 573 (754)
Q Consensus 495 ~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd~~~Al~d~~~ 573 (754)
++|+..|.+|++|||....+|.-.|.=|+++++-..|++.|++||.++| |..+||..|.+|.-++...=|+=.|++
T Consensus 347 ---EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 347 ---EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred ---HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 699999999999999999999999999
Q ss_pred HHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHH
Q 004426 574 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLR 652 (754)
Q Consensus 574 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~ 652 (754)
|.++.|++ ...|..+++..++.++.. |..+|-+|+...-.+..++.++|.++.+
T Consensus 424 A~~~kPnD-------------------------sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~ 478 (559)
T KOG1155|consen 424 ALELKPND-------------------------SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE 478 (559)
T ss_pred HHhcCCCc-------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 99999998 345555666656666555 6899999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHh-------cCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 653 LNCQKAAMRCLRLARN-------HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 653 lg~~eeAl~~~~~Al~-------l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
+++.++|...|.+-++ ..|.--.|...++.-..+.+++++|-....++..-.+.-|
T Consensus 479 l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~e 541 (559)
T KOG1155|consen 479 LKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECE 541 (559)
T ss_pred HHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHH
Confidence 9999999999999998 6677788888999999999999999988888877644433
No 58
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=8.2e-14 Score=154.56 Aligned_cols=221 Identities=14% Similarity=0.133 Sum_probs=179.6
Q ss_pred hhhhhhHhhccchHHHHHHHHHHhhhc--chhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcC--Ch-
Q 004426 423 HQLGCVMFEREEYKDACYYFEAAADAG--HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN--LG- 497 (754)
Q Consensus 423 ~~LG~v~~~~g~~~eA~~~f~~AL~~~--~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~--~g- 497 (754)
+.-|+.+++.|.+-+|.-+|+.|++.+ |..+|..+|.++...+.-..|+..+.+++++.|++-.++...+... .|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 356999999999999999999999985 5678999999999999888899999999999998766666665422 22
Q ss_pred -hhHHHHHHHHHhhCCCChHHHHHHHHHH-----------HHcCCHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHcC
Q 004426 498 -REKIVDLNYASELDPTLSFPYKYRAVAK-----------MEEGQIRAAISEIDRIIVFKL---SVDCLELRAWLFIAAD 562 (754)
Q Consensus 498 -~eAl~dl~kAi~LdP~~~~ay~~rg~~l-----------~~lg~~~eAl~~~~rAl~l~p---~~~~~~~ra~~~~~lg 562 (754)
.+|+..|.+.|+..|... ++...- ..-..+..=.+.|..|...+| +++....+|.+|.-.|
T Consensus 369 q~~Al~~L~~Wi~~~p~y~----~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYV----HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHHHHhCccch----hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 789999999998887533 222211 111123334455556666666 5888888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChh
Q 004426 563 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSF 641 (754)
Q Consensus 563 d~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~ 641 (754)
+|+.|+.+|+.||..+|++ +..|.+++-.+..-++.. |+..|+|||++.|+.++
T Consensus 445 efdraiDcf~~AL~v~Pnd-------------------------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR 499 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPND-------------------------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR 499 (579)
T ss_pred HHHHHHHHHHHHHhcCCch-------------------------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee
Confidence 9999999999999999998 556777777777777776 79999999999999999
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSS 672 (754)
Q Consensus 642 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~ 672 (754)
+++|+|.....+|.++||...|=.||.+.+.
T Consensus 500 ~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 500 VRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred eehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999887
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=2.7e-12 Score=143.98 Aligned_cols=275 Identities=12% Similarity=0.050 Sum_probs=167.7
Q ss_pred HHHHHhhhhhhHhhccchHHHHHHHHHHhhhc--chhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHH-------
Q 004426 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAG--HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMY------- 488 (754)
Q Consensus 418 ka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~--~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay------- 488 (754)
++......|......|++++|++...++.+.. +.-.+...+++...+|+++.|...+.++.+..|+...+.
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 45556778998898999999998887766652 222233345666899999999999999998888754332
Q ss_pred -HHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHH-HHHHHH---HHcC
Q 004426 489 -QERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLE-LRAWLF---IAAD 562 (754)
Q Consensus 489 -~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~-~ra~~~---~~lg 562 (754)
...+.+ ++|...++++.+.+|+++.++..++.+|+.+|++++|++.+.+..+..+. ++... .+..++ ....
T Consensus 163 ~l~~g~~---~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 163 QLARNEN---HAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHCCCH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 223333 89999999999999999999999999999999999999888888877663 32221 221111 1111
Q ss_pred CHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChh
Q 004426 563 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSF 641 (754)
Q Consensus 563 d~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~ 641 (754)
..+.....+.++++--|...+ ....+. ..+...+...++.+ |...+++++. .|+++.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~--~~~~~~-------------------~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~ 297 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTR--HQVALQ-------------------VAMAEHLIECDDHDTAQQIILDGLK-RQYDER 297 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHh--CCHHHH-------------------HHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHH
Confidence 111122233333332322100 001111 11222222223333 4556666666 344444
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhc
Q 004426 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILAD 719 (754)
Q Consensus 642 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~ 719 (754)
+....+.+ ..+++++|+..+++.++..|+|++.+..+|.+++..|++++|...+|++++++|+.+.|.+.|-++.-
T Consensus 298 l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~ 373 (398)
T PRK10747 298 LVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDR 373 (398)
T ss_pred HHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 43333332 33666666666666666666666666666666666666666666666666666666666655555543
No 60
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.55 E-value=3.5e-15 Score=168.49 Aligned_cols=131 Identities=20% Similarity=0.292 Sum_probs=118.2
Q ss_pred CCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhh-cCCCCC----CChhHHHHHHHHhc
Q 004426 225 RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTR-TSRVDL----FCPGIVLELLSFAN 299 (754)
Q Consensus 225 ~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylY-Tg~l~~----i~~~~vlelL~aA~ 299 (754)
+|+.++|||++|++|++||..||..-|.|++.-.+.. ..++.+.|..||+|+| +++... -..+.+.++|..||
T Consensus 719 DGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~--~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaD 796 (1267)
T KOG0783|consen 719 DGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNL--SPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIAD 796 (1267)
T ss_pred CCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeec--CcchHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHH
Confidence 8888999999999999999999999999998766666 6677999999999999 444432 34577999999999
Q ss_pred hhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCch
Q 004426 300 RFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNP 358 (754)
Q Consensus 300 ~f~l~~Lk~~Ce~~L~~~i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~e 358 (754)
.|.+.+|+..||..|.+.++ ..||-.++++|..|++++|...|++||+.|+..++.-.
T Consensus 797 qlli~~Lk~Ice~~ll~kl~-lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Lear 854 (1267)
T KOG0783|consen 797 QLLILELKSICEQSLLRKLN-LKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEAR 854 (1267)
T ss_pred HHHHHHHHHHHHHHHHhHhc-ccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhc
Confidence 99999999999999999999 99999999999999999999999999999999877543
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=3.1e-12 Score=144.01 Aligned_cols=277 Identities=13% Similarity=0.028 Sum_probs=205.1
Q ss_pred hHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcchh---hhhhHHHHHHHhCCHHHHHHHHHH
Q 004426 400 TTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIY---SLAGLARAKYKVGQQYSAYKLINS 476 (754)
Q Consensus 400 ~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~---a~~~larv~~~~G~~~~A~~~~~~ 476 (754)
.+...+.+..+..+++ ...+...+.+...+|++++|..++.++.+..+.. ...-.++++...|+++.|...+++
T Consensus 102 ~A~~~l~~~~~~~~~~---~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~ 178 (409)
T TIGR00540 102 KAEKLIAKNADHAAEP---VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDK 178 (409)
T ss_pred HHHHHHHHHhhcCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444444332322 3445567888889999999999999998874332 222348889999999999999999
Q ss_pred HHHccCCCHHHHHHhhhc----CChhhHHHHHHHHHhhCCCChHHHH----HHHHHHHHcCCHHHHHHHHHHHHHcCC--
Q 004426 477 IISEHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYK----YRAVAKMEEGQIRAAISEIDRIIVFKL-- 546 (754)
Q Consensus 477 aI~~~~~~g~ay~~r~~y----~~g~eAl~dl~kAi~LdP~~~~ay~----~rg~~l~~lg~~~eAl~~~~rAl~l~p-- 546 (754)
..+..|++..++...+.. +..++|...+.+..+..+.....+. ....-+...+..+++.+.+.++..-.|
T Consensus 179 l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~ 258 (409)
T TIGR00540 179 LLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH 258 (409)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH
Confidence 999999887766544421 2227888888888877554444332 222233455666777789999998888
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhcccccccc
Q 004426 547 ---SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDI 623 (754)
Q Consensus 547 ---~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~ 623 (754)
++..+...+..+...|++++|+..++++++..|++... .... +..+..... ++.
T Consensus 259 ~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~-----~~~~-----------------l~~~~~l~~-~~~ 315 (409)
T TIGR00540 259 RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI-----SLPL-----------------CLPIPRLKP-EDN 315 (409)
T ss_pred HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc-----hhHH-----------------HHHhhhcCC-CCh
Confidence 56777788889999999999999999999999997310 0000 111111111 222
Q ss_pred c-hHHHHHHHHHcCCCCh--hHHHhHHHHHHHcCCHHHHHHHHH--HHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHH
Q 004426 624 G-SLAVINQMLINDPGKS--FLRFRQSLLLLRLNCQKAAMRCLR--LARNHSSSEHERLVYEGWILYDTGHREEALSRAE 698 (754)
Q Consensus 624 ~-al~~~~~aL~l~P~~~--~~~~~~g~~L~~lg~~eeAl~~~~--~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e 698 (754)
. ++..++++++.+|+++ .++..+|.++.++|++++|.+.++ ++++.+|++.. +..+|.++..+|+.++|.+.|+
T Consensus 316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHH
Confidence 2 4778999999999999 899999999999999999999999 68889998766 5599999999999999999999
Q ss_pred HHHhc
Q 004426 699 KSISI 703 (754)
Q Consensus 699 ~Ai~l 703 (754)
+++..
T Consensus 395 ~~l~~ 399 (409)
T TIGR00540 395 DSLGL 399 (409)
T ss_pred HHHHH
Confidence 98764
No 62
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=6.2e-13 Score=146.65 Aligned_cols=245 Identities=13% Similarity=0.107 Sum_probs=196.0
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhhc-chhhhhhHHHHHHHhCCHHHHHHHHHHHHHccC--------------C
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADAG-HIYSLAGLARAKYKVGQQYSAYKLINSIISEHK--------------P 483 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~-~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~--------------~ 483 (754)
+...-.+|+.....+++..|+++|.+++++. ....+.+.+-+++.+|++...+....++++... .
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999999999996 223455677789999999888888877776532 1
Q ss_pred CHHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcC
Q 004426 484 TGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAAD 562 (754)
Q Consensus 484 ~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lg 562 (754)
.|.+|..++.| ..++..|.+++.- .....++-.++..++++.+..+..-++|. .......|+.++..|
T Consensus 304 ~g~a~~k~~~~---~~ai~~~~kaLte--------~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDY---EGAIKYYQKALTE--------HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhH---HHHHHHHHHHhhh--------hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc
Confidence 45566666444 7777778775543 22377888888899999999999888997 455567889999999
Q ss_pred CHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhH
Q 004426 563 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL 642 (754)
Q Consensus 563 d~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~ 642 (754)
||..|+..|.+||..+|++.-+|+|.++.+ ..|... ..++.+.+.+|+++|....+
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~------------------~kL~~~------~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACY------------------LKLGEY------PEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHH------------------HHHhhH------HHHHHHHHHHHhcCchHHHH
Confidence 999999999999999999976666665555 333333 22588999999999999999
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHc-CCHHHHHHHHHH
Q 004426 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT-GHREEALSRAEK 699 (754)
Q Consensus 643 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~-G~~eeAl~~~e~ 699 (754)
|+++|.+|..+.++..|++.|+.+++++|++.++....+-|.-.+ |+..+- ..+++
T Consensus 429 y~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~e-e~~~r 485 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPE-ETKRR 485 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHH-HHHHh
Confidence 999999999999999999999999999999999999999998874 444333 35566
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.50 E-value=1.4e-11 Score=140.54 Aligned_cols=121 Identities=19% Similarity=0.140 Sum_probs=99.9
Q ss_pred HHHhCCHHHHHHHHHHHHHccC------------CCHHHHHHhhhcC--------ChhhHHHHHHHHHhhCCCChHHHHH
Q 004426 461 KYKVGQQYSAYKLINSIISEHK------------PTGWMYQERSLYN--------LGREKIVDLNYASELDPTLSFPYKY 520 (754)
Q Consensus 461 ~~~~G~~~~A~~~~~~aI~~~~------------~~g~ay~~r~~y~--------~g~eAl~dl~kAi~LdP~~~~ay~~ 520 (754)
.-..|...+++....++|.... -.|.+|..+..-. ...+++..+++|+++||+|+.+.++
T Consensus 404 ~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~ 483 (799)
T KOG4162|consen 404 IERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFY 483 (799)
T ss_pred HhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4456667777887888887331 1455555553211 1167889999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 521 RAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 521 rg~~l~~lg~~~eAl~~~~rAl~l~p--~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
++.=|..+++.+.|+...++++++++ ++.+|...+.++-..+|+.+|+.-.+.+++=-|+|
T Consensus 484 lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N 546 (799)
T KOG4162|consen 484 LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN 546 (799)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999987 38899999999999999999999999999988873
No 64
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.49 E-value=1.9e-12 Score=134.02 Aligned_cols=181 Identities=12% Similarity=0.029 Sum_probs=142.6
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccc
Q 004426 509 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-V---DCLELRAWLFIAADDYESALRDTLALLALESNYMMF 584 (754)
Q Consensus 509 ~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~---~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~ 584 (754)
..++..+..++.+|..+...|++++|+..|++++..+|+ + ..++.+|.++..+|++++|+..|+++++.+|++...
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 567888999999999999999999999999999999995 3 467889999999999999999999999999987531
Q ss_pred ccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHH-----------------HhH
Q 004426 585 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLR-----------------FRQ 646 (754)
Q Consensus 585 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~-----------------~~~ 646 (754)
.-+...++...... .+ ......++.+ |+..+++++..+|.+..++ ..+
T Consensus 107 ---~~a~~~~g~~~~~~----~~-------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~ 172 (235)
T TIGR03302 107 ---DYAYYLRGLSNYNQ----ID-------RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYV 172 (235)
T ss_pred ---HHHHHHHHHHHHHh----cc-------cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 01223333222111 00 0011112333 6889999999999997653 467
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 647 SLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 647 g~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
|.++.+.|++++|+..++++++..|++ +++++++|+++..+|++++|.+.+++...-
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888999999999999999999997764 589999999999999999999877665443
No 65
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.49 E-value=1.1e-11 Score=149.24 Aligned_cols=313 Identities=11% Similarity=0.017 Sum_probs=223.9
Q ss_pred HHHhhhhhhHhhccchHHHHHHHHHHhhhcchh--hhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHH-------HHHH
Q 004426 420 LALHQLGCVMFEREEYKDACYYFEAAADAGHIY--SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGW-------MYQE 490 (754)
Q Consensus 420 ~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~--a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~-------ay~~ 490 (754)
...+..+.+.++.|++++|+..|+++++.+|.. +...+..++...|+..+|...+++++...+.... .|.+
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 456778999999999999999999999997764 3446777788899999999999999944333222 3333
Q ss_pred hhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004426 491 RSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRD 570 (754)
Q Consensus 491 r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d 570 (754)
.+.| ++|++.|+++++.+|+++.++..++.++.+.++.++|+..+++++..+|+...+..++.++...++..+|+..
T Consensus 115 ~gdy---d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRW---DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCH---HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHH
Confidence 3444 8999999999999999999999999999999999999999999999999855555567777778888889999
Q ss_pred HHHHHhcCCCcccc-ccchhhh-------HHHHHHhhhhccccchh----------hhhhhh--hcccccccc---c-hH
Q 004426 571 TLALLALESNYMMF-HGRVSGD-------HLVKLLNHHVRSWSPAD----------CWIKLY--DRWSSVDDI---G-SL 626 (754)
Q Consensus 571 ~~~al~l~P~~~~~-~~~~~~~-------~~~~~l~~~~~~~~~A~----------~~~~l~--~~~~~~~d~---~-al 626 (754)
|+++++++|++..+ .....+. -...++.....-++..+ -.+... ...+.-+++ + |+
T Consensus 192 ~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 192 SSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 99999999998652 2222111 11122222222222222 111111 000111222 1 68
Q ss_pred HHHHHHHHcCCCCh-------hHHHhHHHHHHHcCCHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHcCCHHHHHHHHH
Q 004426 627 AVINQMLINDPGKS-------FLRFRQSLLLLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAE 698 (754)
Q Consensus 627 ~~~~~aL~l~P~~~-------~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-P~~~ea~~~~G~~ly~~G~~eeAl~~~e 698 (754)
+.+++.+..-|..+ .+++-+=.+|..+|++.++++.|+...... |--.++....|-.++.+++-++|.+.|+
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 88899888544433 234566678889999999999999887655 3345688899999999999999999999
Q ss_pred HHHhcCC-------ChHHHHHHHHHhhccCCCCCchhHHHHHHHHHhc
Q 004426 699 KSISIER-------TFEAFFLKAYILADTNLDPESSTYVIQLLEEALR 739 (754)
Q Consensus 699 ~Ai~l~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (754)
+++.=+| +.+...-.-||+ +|.|--..-.+||++..+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~----ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSL----NESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHH----HhcccHHHHHHHHHHHHh
Confidence 9987553 222233445555 445666666677776665
No 66
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.47 E-value=3.2e-11 Score=145.11 Aligned_cols=84 Identities=10% Similarity=-0.009 Sum_probs=41.8
Q ss_pred hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (754)
Q Consensus 625 al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~ 704 (754)
|...++..+...|+|+.++..+|.++...|.+.+|+..++.+..++|++..+.+.+|.+..++|++++|-...+..++..
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 34444444555555555555555555555555555555555555555555555555555555555555544444444444
Q ss_pred CChH
Q 004426 705 RTFE 708 (754)
Q Consensus 705 ~~~~ 708 (754)
|...
T Consensus 515 Pe~~ 518 (822)
T PRK14574 515 PEDI 518 (822)
T ss_pred CCch
Confidence 4444
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=5.7e-12 Score=139.52 Aligned_cols=215 Identities=10% Similarity=0.020 Sum_probs=159.8
Q ss_pred hhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc----CChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 004426 454 LAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEG 529 (754)
Q Consensus 454 ~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y----~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg 529 (754)
|+.+|--|...|.+.+|...+.++..+++.+|.+|..-|.. +..+.|+..|.+|.++=|.-..|+.++|.=++.++
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhc
Confidence 34444444444444444444444444444444444333321 22278899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc-cccchhhhHHHHHHhhhhccccch
Q 004426 530 QIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMM-FHGRVSGDHLVKLLNHHVRSWSPA 607 (754)
Q Consensus 530 ~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~-~~~~~~~~~~~~~l~~~~~~~~~A 607 (754)
+++-|-..|..|+.+.|+ |-.++..|.+....+.|.+|+..|+++++.-+..-. -.--.....++|.+...+..+++
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e- 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE- 473 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH-
Confidence 999999999999999995 777788999999999999999999999953332210 00011123444444444444444
Q ss_pred hhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 004426 608 DCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD 686 (754)
Q Consensus 608 ~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~ 686 (754)
|+..++++|.+.|.++.+|-..|.++..+|.++.|+..|.+||.++|++.-+---+|.++-+
T Consensus 474 -----------------AI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 474 -----------------AIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred -----------------HHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 48899999999999999999999999999999999999999999999997777667755544
No 68
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=6.3e-13 Score=142.27 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=84.6
Q ss_pred cccc-hHHHHHHHHHcCCCChhH------------HHhHHHHHHHcCCHHHHHHHHHHHHhcCCCch----hHHHHHHHH
Q 004426 621 DDIG-SLAVINQMLINDPGKSFL------------RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH----ERLVYEGWI 683 (754)
Q Consensus 621 ~d~~-al~~~~~aL~l~P~~~~~------------~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~----ea~~~~G~~ 683 (754)
++.. +...++|+|.++|.+-.+ |-.+|+=+.+.|++..|-+.|..||.++|++. --|.|++.+
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 4444 567899999999988765 56788899999999999999999999999964 458999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhh
Q 004426 684 LYDTGHREEALSRAEKSISIERTFE-AFFLKAYILA 718 (754)
Q Consensus 684 ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~ 718 (754)
...+||.+||+..-++|++|+|++. |+..+|-+..
T Consensus 297 ~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred hcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 8888886543
No 69
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.44 E-value=7e-12 Score=148.26 Aligned_cols=143 Identities=10% Similarity=-0.081 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHH
Q 004426 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (754)
Q Consensus 548 ~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 627 (754)
++.+.+.|.+...+|++++|+..++++++++|++ .++......+....+++++| +.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~------~~a~~~~a~~L~~~~~~eeA------------------~~ 141 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS------SEAFILMLRGVKRQQGIEAG------------------RA 141 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHhccHHHH------------------HH
Confidence 4444455555555555555555555555555554 33333333333333333334 55
Q ss_pred HHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCC
Q 004426 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI-ERT 706 (754)
Q Consensus 628 ~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l-~~~ 706 (754)
.++++|+.+|.++.+++.+|.+|.++|++++|.+.|+++++-+|+++++++++|.+|..+|+.++|...|++|++. .|.
T Consensus 142 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 142 EIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 5666666666677889999999999999999999999999999999999999999999999999999999999998 455
Q ss_pred hHHHHHHH
Q 004426 707 FEAFFLKA 714 (754)
Q Consensus 707 ~~a~~~~~ 714 (754)
.-+|...+
T Consensus 222 ~~~~~~~~ 229 (694)
T PRK15179 222 ARKLTRRL 229 (694)
T ss_pred hHHHHHHH
Confidence 44655443
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.44 E-value=5e-11 Score=130.76 Aligned_cols=268 Identities=15% Similarity=0.051 Sum_probs=181.1
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhhcchhh--hhhHHHHHHHhCCHHHHHHHHHHHH----HccCCCHHHHHHhh
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIYS--LAGLARAKYKVGQQYSAYKLINSII----SEHKPTGWMYQERS 492 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~a--~~~larv~~~~G~~~~A~~~~~~aI----~~~~~~g~ay~~r~ 492 (754)
....+..+......|++++|...++++++..|.+. +.. +..+...|++..+.....+++ ..+|....++...+
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 121 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence 34466788899999999999999999999866443 222 444555565555544455544 34454444443332
Q ss_pred h----cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-H----HHHHHHHHHHHHcCC
Q 004426 493 L----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-V----DCLELRAWLFIAADD 563 (754)
Q Consensus 493 ~----y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~----~~~~~ra~~~~~lgd 563 (754)
. .+..++|...++++++++|+++.++..+|.++.+.|++++|+..+++++...|. + ..+..++.++..+|+
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 1 123389999999999999999999999999999999999999999999999773 2 234568899999999
Q ss_pred HHHHHHHHHHHHhcCCCccccccchhhhHHHHH-HhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCC--Ch
Q 004426 564 YESALRDTLALLALESNYMMFHGRVSGDHLVKL-LNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG--KS 640 (754)
Q Consensus 564 ~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~-l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~--~~ 640 (754)
+++|+..|++++...|... ........ .....-..+-+. ....+| +.+.... ....|+ ..
T Consensus 202 ~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~g~~---~~~~~w------~~~~~~~--~~~~~~~~~~ 264 (355)
T cd05804 202 YEAALAIYDTHIAPSAESD------PALDLLDAASLLWRLELAGHV---DVGDRW------EDLADYA--AWHFPDHGLA 264 (355)
T ss_pred HHHHHHHHHHHhccccCCC------hHHHHhhHHHHHHHHHhcCCC---ChHHHH------HHHHHHH--HhhcCcccch
Confidence 9999999999988777421 11110000 000000011110 111111 1111111 111122 23
Q ss_pred hHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC---------chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS---------EHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (754)
Q Consensus 641 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---------~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~ 704 (754)
.....++.++...|+.++|.+.++......-. ...+...++++++.+|++++|+....+|+.+-
T Consensus 265 ~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 265 FNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 33346888999999999999999887664432 46778999999999999999999999998763
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.42 E-value=3.2e-11 Score=121.28 Aligned_cols=202 Identities=16% Similarity=0.097 Sum_probs=148.6
Q ss_pred HHHhhhhhhHhhccchHHHHHHHHHHhhhcchh--hhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCCh
Q 004426 420 LALHQLGCVMFEREEYKDACYYFEAAADAGHIY--SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (754)
Q Consensus 420 ~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~--a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g 497 (754)
.+...||.-|++.|++..|..-+++||+.+|.+ +|..++.+|..+|+.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~------------------------------ 85 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN------------------------------ 85 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh------------------------------
Confidence 456778888999999999999999999987654 566666677777765
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLA 573 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~----~~~~~~ra~~~~~lgd~~~Al~d~~~ 573 (754)
+.|-+.|++|+.++|++.+.++|-|.-+..+|++++|...|++|+. +|. ++.+.|.|+|-.+.|+.+.|..+|++
T Consensus 86 ~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 86 DLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred hhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence 4556678999999999999999999999999999999999999997 563 57789999999999999999999999
Q ss_pred HHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHc
Q 004426 574 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL 653 (754)
Q Consensus 574 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~l 653 (754)
+++++|++.. +........-..+++.. |-..+++-...-+-.++..-..-.+-.++
T Consensus 165 aL~~dp~~~~------~~l~~a~~~~~~~~y~~------------------Ar~~~~~~~~~~~~~A~sL~L~iriak~~ 220 (250)
T COG3063 165 ALELDPQFPP------ALLELARLHYKAGDYAP------------------ARLYLERYQQRGGAQAESLLLGIRIAKRL 220 (250)
T ss_pred HHHhCcCCCh------HHHHHHHHHHhcccchH------------------HHHHHHHHHhcccccHHHHHHHHHHHHHh
Confidence 9999999832 22211111112222222 33444444444444444443333444557
Q ss_pred CCHHHHHHHHHHHHhcCCCchhH
Q 004426 654 NCQKAAMRCLRLARNHSSSEHER 676 (754)
Q Consensus 654 g~~eeAl~~~~~Al~l~P~~~ea 676 (754)
|+...|-+.-.+.-++.|...+-
T Consensus 221 gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 221 GDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred ccHHHHHHHHHHHHHhCCCcHHH
Confidence 88887877777777888876653
No 72
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=2.7e-12 Score=133.54 Aligned_cols=163 Identities=17% Similarity=0.166 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHH
Q 004426 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 594 (754)
Q Consensus 516 ~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~ 594 (754)
+-..+=|+=+++.++|++|+..|++||+|+|. +-.|.+|+.+|.++|.++.|+.|++.|+.+||.|
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y------------- 148 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY------------- 148 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-------------
Confidence 34578899999999999999999999999995 6667789999999999999999999999999877
Q ss_pred HHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 004426 595 KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 674 (754)
Q Consensus 595 ~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 674 (754)
..+|-++|.++.-+|++++|++.|++||+++|++.
T Consensus 149 ---------------------------------------------skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 149 ---------------------------------------------SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred ---------------------------------------------HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 46788899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCHH---HHHHHHHHHHhc-C-CChHHHHHHHHHhhccCCCCCchhHHHHHHHHHhcCCCCCcccc
Q 004426 675 ERLVYEGWILYDTGHRE---EALSRAEKSISI-E-RTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 748 (754)
Q Consensus 675 ea~~~~G~~ly~~G~~e---eAl~~~e~Ai~l-~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (754)
..--+++|+-..++.-. .+....+=+-.+ . |++-.-|. .+| .+-.-|+++.....+ ||-+-|
T Consensus 184 ~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~-------~~l--~nnp~l~~~~~~m~~---~~~~~~ 250 (304)
T KOG0553|consen 184 SYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFN-------GDL--MNNPQLMQLASQMMK---DGALNG 250 (304)
T ss_pred HHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhc-------ccc--ccCHHHHHHHHHHhh---cccccC
Confidence 88888998888877666 555555555444 2 66664333 222 233457777777766 444443
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.41 E-value=1.1e-11 Score=135.97 Aligned_cols=175 Identities=16% Similarity=0.007 Sum_probs=120.6
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccc
Q 004426 510 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-S---VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFH 585 (754)
Q Consensus 510 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p-~---~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~ 585 (754)
.||+++.+|..+|.++...|+.++|...+.++.+..| + .+..+.++.++...|++++|+..++++++.+|++....
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 3899999999999999999999999999999998877 3 35567788999999999999999999999999885211
Q ss_pred cchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHH
Q 004426 586 GRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRL 665 (754)
Q Consensus 586 ~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~ 665 (754)
....... .+++.....+. +...+......+|....++..+|.++..+|++++|++.+++
T Consensus 81 ~~~~~~~-------------------~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 139 (355)
T cd05804 81 KLHLGAF-------------------GLGDFSGMRDH--VARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARR 139 (355)
T ss_pred HHhHHHH-------------------HhcccccCchh--HHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1100000 00000000000 12222333345566666666667777777777777777777
Q ss_pred HHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 666 ARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 705 (754)
Q Consensus 666 Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~ 705 (754)
+++++|+++.++..+|.+++..|++++|++.+++++.+.|
T Consensus 140 al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 140 ALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 7777777777777777777777777777777777777655
No 74
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.40 E-value=4.2e-12 Score=128.83 Aligned_cols=123 Identities=13% Similarity=0.089 Sum_probs=97.4
Q ss_pred cCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccc
Q 004426 528 EGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSP 606 (754)
Q Consensus 528 lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~ 606 (754)
.++.++++..++++++.+|+ ++.|..+|.++..+|++++|+..|++|++++|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-------------------------- 105 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-------------------------- 105 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------------------
Confidence 55666777777777777774 666666777777777777766665555555554
Q ss_pred hhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHH-HHcCC--HHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 004426 607 ADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL-LRLNC--QKAAMRCLRLARNHSSSEHERLVYEGWI 683 (754)
Q Consensus 607 A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L-~~lg~--~eeAl~~~~~Al~l~P~~~ea~~~~G~~ 683 (754)
++.++++.|.++ ...|+ .++|.+.+++|++++|++.+++.++|.+
T Consensus 106 --------------------------------~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~ 153 (198)
T PRK10370 106 --------------------------------NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASD 153 (198)
T ss_pred --------------------------------CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 567788899876 67777 5899999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 684 LYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 684 ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
++.+|++++|++.|++++++.|...
T Consensus 154 ~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 154 AFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999988754
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=6.4e-12 Score=130.93 Aligned_cols=228 Identities=14% Similarity=0.092 Sum_probs=190.6
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc---CChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Q 004426 456 GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY---NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIR 532 (754)
Q Consensus 456 ~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y---~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~ 532 (754)
.+|++|+++|-+.+|...+.+.++..|-...-.+.-..| ....-|+..|...++--|.++-.....|-++..+++++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence 478999999999999999999998876432222211222 22377899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhh
Q 004426 533 AAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWI 611 (754)
Q Consensus 533 eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~ 611 (754)
+|+..|.++++++|. .++..--+.-|+--++.+-|++.|++++.+.-.+...+.+.+...+ ..+|++.+
T Consensus 308 ~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~------yaqQ~D~~---- 377 (478)
T KOG1129|consen 308 DALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL------YAQQIDLV---- 377 (478)
T ss_pred HHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH------hhcchhhh----
Confidence 999999999999994 5654445556888999999999999999998877555555554433 33455544
Q ss_pred hhhhccccccccchHHHHHHHHHcCC---CChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcC
Q 004426 612 KLYDRWSSVDDIGSLAVINQMLINDP---GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG 688 (754)
Q Consensus 612 ~l~~~~~~~~d~~al~~~~~aL~l~P---~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G 688 (754)
|.+|.||+...- ..++.|+|+|.+....|++--|.++++.|+-.+|+++++++|+|.+--..|
T Consensus 378 --------------L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G 443 (478)
T KOG1129|consen 378 --------------LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSG 443 (478)
T ss_pred --------------HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcC
Confidence 889999998764 457889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCh
Q 004426 689 HREEALSRAEKSISIERTF 707 (754)
Q Consensus 689 ~~eeAl~~~e~Ai~l~~~~ 707 (754)
+.++|-+.+.-|-++.|.-
T Consensus 444 ~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 444 DILGARSLLNAAKSVMPDM 462 (478)
T ss_pred chHHHHHHHHHhhhhCccc
Confidence 9999999999999999974
No 76
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.39 E-value=5.5e-11 Score=137.71 Aligned_cols=256 Identities=18% Similarity=0.101 Sum_probs=189.1
Q ss_pred hhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcC----ChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 004426 453 SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN----LGREKIVDLNYASELDPTLSFPYKYRAVAKMEE 528 (754)
Q Consensus 453 a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~----~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~l 528 (754)
...+.|+..+..|++++|...+..+|...|.+..+|+..|... .-++++...-.|--|+|.+.+-|..++....++
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 3456677888999999999999999999998777776665432 227888888899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ccc--ccc-------ch----hh
Q 004426 529 GQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESN----YMM--FHG-------RV----SG 590 (754)
Q Consensus 529 g~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~----~~~--~~~-------~~----~~ 590 (754)
|++++|.-+|+|||+.+|. .+..+.|..+|.++|++..|..-|.+++.++|. -.+ ..+ .. ++
T Consensus 221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999995 777788999999999999999999999999991 111 000 00 01
Q ss_pred hHH------------------HHHHhhhhccccchhhhhhhhhc----------------------cccc----------
Q 004426 591 DHL------------------VKLLNHHVRSWSPADCWIKLYDR----------------------WSSV---------- 620 (754)
Q Consensus 591 ~~~------------------~~~l~~~~~~~~~A~~~~~l~~~----------------------~~~~---------- 620 (754)
..+ ...+.-...+|+.|.-.+.-.-. .-.+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 111 11112222333333221111111 0000
Q ss_pred ----------cccchHHHHHHHHHcC----CCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHH
Q 004426 621 ----------DDIGSLAVINQMLIND----PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE-HERLVYEGWILY 685 (754)
Q Consensus 621 ----------~d~~al~~~~~aL~l~----P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-~ea~~~~G~~ly 685 (754)
+.-..+.++..-+..+ -..+++++..+.+|...|++.+|++.+..++...+.+ +..++..|-|+.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 1111111222222221 2457889999999999999999999999999998875 467788999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCChH
Q 004426 686 DTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 686 ~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
.+|++++|++.|++++.++|+.-
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~ 483 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNL 483 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCch
Confidence 99999999999999999999876
No 77
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.38 E-value=3.5e-10 Score=126.96 Aligned_cols=251 Identities=12% Similarity=-0.035 Sum_probs=183.7
Q ss_pred hhhhHhhccchHHHHHHHHHHhhhcchh--hhh-hHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc----CCh
Q 004426 425 LGCVMFEREEYKDACYYFEAAADAGHIY--SLA-GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLG 497 (754)
Q Consensus 425 LG~v~~~~g~~~eA~~~f~~AL~~~~~~--a~~-~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y----~~g 497 (754)
.+......|++++|..+|.+|.+..+.. +.. -.++++...|+++.|...+++..+..|++.+++...... +..
T Consensus 124 aA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 124 AAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhH
Confidence 3555588999999999999999885543 222 237789999999999999999999999987766555321 222
Q ss_pred hhHHHHHHHHHhhCCCChHHHH--------HHHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYK--------YRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESAL 568 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~--------~rg~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd~~~Al 568 (754)
++|+..+.+..+..+....... .+........+-+.....++..-.-.| ++......+..+...|+.++|.
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 7888777777777666544322 111111222222333333333322234 4677777888999999999999
Q ss_pred HHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHH
Q 004426 569 RDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSL 648 (754)
Q Consensus 569 ~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~ 648 (754)
..++++++..|+.. .. .+|-....-+...++..+++.+..+|+++++++..|.
T Consensus 284 ~~L~~~l~~~~~~~-------l~--------------------~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgr 336 (398)
T PRK10747 284 QIILDGLKRQYDER-------LV--------------------LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQ 336 (398)
T ss_pred HHHHHHHhcCCCHH-------HH--------------------HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 99999999666531 11 1111111112222688999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 649 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
++.+.+++++|.+.++++++.+|++. .+..++.++-.+|+.++|.+.|++++.+
T Consensus 337 l~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 337 LLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999976 4668999999999999999999999876
No 78
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.37 E-value=2.4e-11 Score=123.35 Aligned_cols=122 Identities=10% Similarity=0.001 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHH-HHHcCC--HHHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWL-FIAADD--YESALRDTLA 573 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~-~~~lgd--~~~Al~d~~~ 573 (754)
++++..+.++++.+|+++.+|..+|.+++.+|++++|+..|++|++++|+ ++.+...|.+ +...|+ +++|+..+++
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~ 135 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDK 135 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999995 7888888875 467776 3666655555
Q ss_pred HHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHc
Q 004426 574 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL 653 (754)
Q Consensus 574 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~l 653 (754)
+++++ |+++.+++++|..+..+
T Consensus 136 al~~d----------------------------------------------------------P~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 136 ALALD----------------------------------------------------------ANEVTALMLLASDAFMQ 157 (198)
T ss_pred HHHhC----------------------------------------------------------CCChhHHHHHHHHHHHc
Confidence 55555 55567899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHH
Q 004426 654 NCQKAAMRCLRLARNHSSSEHERL 677 (754)
Q Consensus 654 g~~eeAl~~~~~Al~l~P~~~ea~ 677 (754)
|++++|+..++++++++|.+.+..
T Consensus 158 g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 158 ADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred CCHHHHHHHHHHHHhhCCCCccHH
Confidence 999999999999999999987664
No 79
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.36 E-value=1.4e-11 Score=115.98 Aligned_cols=118 Identities=15% Similarity=0.130 Sum_probs=87.5
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhh
Q 004426 536 SEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLY 614 (754)
Q Consensus 536 ~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~ 614 (754)
+.|+++++++|+ ....+.++..+...|++++|+..|+++++++|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---------------------------------- 49 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY---------------------------------- 49 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC----------------------------------
Confidence 345666666664 455556666666667666666665555555554
Q ss_pred hccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHH
Q 004426 615 DRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 694 (754)
Q Consensus 615 ~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 694 (754)
++.+|+++|.++.++|++++|...++++++++|++++.++++|++++..|++++|+
T Consensus 50 ------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 105 (135)
T TIGR02552 50 ------------------------NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESAL 105 (135)
T ss_pred ------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 35667778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCChHHHH
Q 004426 695 SRAEKSISIERTFEAFF 711 (754)
Q Consensus 695 ~~~e~Ai~l~~~~~a~~ 711 (754)
+.++++++++|+...|.
T Consensus 106 ~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 106 KALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHhccccchHH
Confidence 88888888888777543
No 80
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=3.3e-12 Score=132.86 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=94.3
Q ss_pred hhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 004426 607 ADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILY 685 (754)
Q Consensus 607 A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly 685 (754)
|+-+=.-+.......+|. |+..|++||+++|.++.+|-||+-+|.+||.++.|+.+.+.|+.++|++..+|--+|.+++
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 433334455555567887 8889999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCChHHH
Q 004426 686 DTGHREEALSRAEKSISIERTFEAF 710 (754)
Q Consensus 686 ~~G~~eeAl~~~e~Ai~l~~~~~a~ 710 (754)
.+|++++|+..|.||+.|+|+.+.|
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESY 185 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHH
Confidence 9999999999999999999999954
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.34 E-value=1.3e-10 Score=132.69 Aligned_cols=283 Identities=18% Similarity=0.076 Sum_probs=217.1
Q ss_pred hhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhc---chhhhhhHHHHHHHhCCHHHHHHHH
Q 004426 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG---HIYSLAGLARAKYKVGQQYSAYKLI 474 (754)
Q Consensus 398 ~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~---~~~a~~~larv~~~~G~~~~A~~~~ 474 (754)
...+++.+++++.+.+.+ ..+.+.++.-|..++++..|.....++++.+ +..+|..++.+.-..+++.+|....
T Consensus 460 h~kslqale~av~~d~~d---p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTD---PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 445788899988876655 3678889999999999999999999999983 4568999999999999999999999
Q ss_pred HHHHHccCC-CHHHH----HHhhhcCChhhHHHHHHHHHhhCCCCh---------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 475 NSIISEHKP-TGWMY----QERSLYNLGREKIVDLNYASELDPTLS---------FPYKYRAVAKMEEGQIRAAISEIDR 540 (754)
Q Consensus 475 ~~aI~~~~~-~g~ay----~~r~~y~~g~eAl~dl~kAi~LdP~~~---------~ay~~rg~~l~~lg~~~eAl~~~~r 540 (754)
+.+++-.+. ++.|. .... +++.++++......+.+--+.. ....--+...+.+.+..+|+..+++
T Consensus 537 d~al~E~~~N~~l~~~~~~i~~~-~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ 615 (799)
T KOG4162|consen 537 DAALEEFGDNHVLMDGKIHIELT-FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRY 615 (799)
T ss_pred HHHHHHhhhhhhhchhhhhhhhh-cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHH
Confidence 999988775 33332 2221 3333555555555444433211 1111223333334455566666655
Q ss_pred HHHcC-------------------CCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHH
Q 004426 541 IIVFK-------------------LSV--------DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 593 (754)
Q Consensus 541 Al~l~-------------------p~~--------~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~ 593 (754)
+..+- |.+ ..|...+..+...+.-++|..++..|-.++|-. ...+++
T Consensus 616 ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~------~~~~~~ 689 (799)
T KOG4162|consen 616 LSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS------ASVYYL 689 (799)
T ss_pred HHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh------HHHHHH
Confidence 55431 211 123456678888999999999999999999865 557778
Q ss_pred HHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHH--HHHHHHhcCC
Q 004426 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMR--CLRLARNHSS 671 (754)
Q Consensus 594 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~--~~~~Al~l~P 671 (754)
.+.+....+++.+| ...|..|+.+||+++..-..+|.+|.+.|++.-|.. .++.|++++|
T Consensus 690 ~G~~~~~~~~~~EA------------------~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEA------------------KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred hhHHHHHHHhhHHH------------------HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 88888888888888 778999999999999999999999999999888888 9999999999
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 672 SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 672 ~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
.+++|++++|-++-.+|+.++|...|.-|+.+.+|..
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999998865
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.33 E-value=3.6e-11 Score=124.48 Aligned_cols=166 Identities=14% Similarity=0.052 Sum_probs=124.0
Q ss_pred hhHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HH---HHHHHHHHHHHc--------C
Q 004426 498 REKIVDLNYASELDPTLS---FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VD---CLELRAWLFIAA--------D 562 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~---~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~---~~~~ra~~~~~l--------g 562 (754)
++|+..|++++..+|+++ .+++.+|.++..+|++++|+..|+++++..|+ +. .++.+|.++... |
T Consensus 50 ~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 129 (235)
T TIGR03302 50 TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQT 129 (235)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHH
Confidence 566667777777777765 68899999999999999999999999999995 43 578899988876 8
Q ss_pred CHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCC--
Q 004426 563 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGK-- 639 (754)
Q Consensus 563 d~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~-- 639 (754)
++++|+..|+++++.+|++..+. .+......+..... .....+.+.+...+++. |+..+.+++...|+.
T Consensus 130 ~~~~A~~~~~~~~~~~p~~~~~~---~a~~~~~~~~~~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (235)
T TIGR03302 130 AAREAFEAFQELIRRYPNSEYAP---DAKKRMDYLRNRLA-----GKELYVARFYLKRGAYVAAINRFETVVENYPDTPA 201 (235)
T ss_pred HHHHHHHHHHHHHHHCCCChhHH---HHHHHHHHHHHHHH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc
Confidence 99999999999999999974321 11111111111111 11122333344456666 788999999997764
Q ss_pred -hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 640 -SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (754)
Q Consensus 640 -~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 671 (754)
+.+++++|.++..+|++++|...++......|
T Consensus 202 ~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 202 TEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 58999999999999999999998877766555
No 83
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.30 E-value=6.9e-11 Score=139.92 Aligned_cols=145 Identities=11% Similarity=-0.079 Sum_probs=92.7
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchh
Q 004426 511 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (754)
Q Consensus 511 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~ 589 (754)
.|.++.+|.++|.+..++|+++||...++++++++|+ ..+..+++.++.+++++++|+..+++++..+|++ ..
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~------~~ 155 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS------AR 155 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC------HH
Confidence 3555555555555555555555555555555555554 4445555555555555555555555555555554 22
Q ss_pred hhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH 669 (754)
Q Consensus 590 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 669 (754)
+...++.......++++| ...|+++++.+|+++.++.++|.+|..+|+.++|...|++|++.
T Consensus 156 ~~~~~a~~l~~~g~~~~A------------------~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQA------------------DACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHhcchHHH------------------HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333333333333333333 45566666666777889999999999999999999999999999
Q ss_pred CCCchhHHHH
Q 004426 670 SSSEHERLVY 679 (754)
Q Consensus 670 ~P~~~ea~~~ 679 (754)
..+-+-++.+
T Consensus 218 ~~~~~~~~~~ 227 (694)
T PRK15179 218 IGDGARKLTR 227 (694)
T ss_pred hCcchHHHHH
Confidence 9988766544
No 84
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.28 E-value=6.4e-11 Score=111.56 Aligned_cols=117 Identities=18% Similarity=0.110 Sum_probs=105.5
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 502 VDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESN 580 (754)
Q Consensus 502 ~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~ 580 (754)
+.|.++++++|+++.+...+|..+...|++++|+..|++++.++|+ +..+..+|.++..+|++++|+..|+++++++|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4578999999999999999999999999999999999999999995 788889999999999999998877777776665
Q ss_pred ccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHH
Q 004426 581 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAM 660 (754)
Q Consensus 581 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl 660 (754)
++..++++|.++..+|++++|+
T Consensus 84 ----------------------------------------------------------~~~~~~~la~~~~~~g~~~~A~ 105 (135)
T TIGR02552 84 ----------------------------------------------------------DPRPYFHAAECLLALGEPESAL 105 (135)
T ss_pred ----------------------------------------------------------ChHHHHHHHHHHHHcCCHHHHH
Confidence 4567888999999999999999
Q ss_pred HHHHHHHhcCCCchhH
Q 004426 661 RCLRLARNHSSSEHER 676 (754)
Q Consensus 661 ~~~~~Al~l~P~~~ea 676 (754)
..++++++++|++...
T Consensus 106 ~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 106 KALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHHHhccccchH
Confidence 9999999999998764
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=8.6e-10 Score=125.37 Aligned_cols=231 Identities=14% Similarity=0.084 Sum_probs=160.1
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhh-------cch--hhhh-hHHHHHHHhCCHHHHHHHHHHHHHcc-------
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADA-------GHI--YSLA-GLARAKYKVGQQYSAYKLINSIISEH------- 481 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~-------~~~--~a~~-~larv~~~~G~~~~A~~~~~~aI~~~------- 481 (754)
.....+++..|..+|+|+.|+..|+.|+.+ .|. .... .+|.+|..++++.+|+..|.+|+...
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345667999999999999999999999988 332 2233 37889999999999999999887653
Q ss_pred -CC-------CHHHHHHhhhcCChhhHHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004426 482 -KP-------TGWMYQERSLYNLGREKIVDLNYASEL--------DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK 545 (754)
Q Consensus 482 -~~-------~g~ay~~r~~y~~g~eAl~dl~kAi~L--------dP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~ 545 (754)
|. ++.+|..+|.+ .+|...+++|+++ .|.-+..+.+.+.++..++++++|+..+++++++-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf---~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKF---AEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CHHHHHHHHHHHHHHhccCCh---HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 22 23333333333 6666666666543 34445667777888888888888888888877762
Q ss_pred ---C-----C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhc
Q 004426 546 ---L-----S-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDR 616 (754)
Q Consensus 546 ---p-----~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~ 616 (754)
| . +....+.|.+|..+|+|++|...|.+|+++.-..- |
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~---~------------------------------ 402 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL---G------------------------------ 402 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc---c------------------------------
Confidence 2 1 22334567778888888888888888877654220 0
Q ss_pred cccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcC-------CCchhHHHHHHHHHHHcCC
Q 004426 617 WSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS-------SSEHERLVYEGWILYDTGH 689 (754)
Q Consensus 617 ~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-------P~~~ea~~~~G~~ly~~G~ 689 (754)
..++.......++|....+++++++|-..|..++.+. |+-...+-|+|-+|-.+|+
T Consensus 403 -----------------~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 403 -----------------KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred -----------------CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 0123334456677777788888888888877777653 4445677788888888888
Q ss_pred HHHHHHHHHHHHh
Q 004426 690 REEALSRAEKSIS 702 (754)
Q Consensus 690 ~eeAl~~~e~Ai~ 702 (754)
+|+|++..++++.
T Consensus 466 ~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 466 YEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888774
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.22 E-value=7.5e-10 Score=128.87 Aligned_cols=296 Identities=15% Similarity=0.079 Sum_probs=213.8
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhhcchh--hhhhHHHHHHHhCCHHHHHHHHHHHHHccCC--CHHHHHHhhhc
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIY--SLAGLARAKYKVGQQYSAYKLINSIISEHKP--TGWMYQERSLY 494 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~--a~~~larv~~~~G~~~~A~~~~~~aI~~~~~--~g~ay~~r~~y 494 (754)
+.++..+|..|.+--+...|.++|++|-+++.++ +..+.+..+......+.|..-...+-+..+. --+.+..||.|
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 6688889999999889999999999999997655 5566777888888888887776655555442 23334447765
Q ss_pred CCh----hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 004426 495 NLG----REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALR 569 (754)
Q Consensus 495 ~~g----~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~ 569 (754)
... .+|+.+|+.|++.||.+...|..+|.+|.+-|++..|+..|+||..++|. ...-+--+.....+|.|++|+.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 433 78999999999999999999999999999999999999999999999996 3444556778899999999999
Q ss_pred HHHHHHhcCCCcccccc-------chh------------h-----------hHHHHHHhhhhccc---------------
Q 004426 570 DTLALLALESNYMMFHG-------RVS------------G-----------DHLVKLLNHHVRSW--------------- 604 (754)
Q Consensus 570 d~~~al~l~P~~~~~~~-------~~~------------~-----------~~~~~~l~~~~~~~--------------- 604 (754)
-+..++.-...+..+.. |.+ + ..+...+.....+|
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~ 731 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEP 731 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcc
Confidence 98888875554432111 111 0 00000000001111
Q ss_pred -----------------------------------------cchhhhhhhhhcccc--------cccc-chHHHHHHHHH
Q 004426 605 -----------------------------------------SPADCWIKLYDRWSS--------VDDI-GSLAVINQMLI 634 (754)
Q Consensus 605 -----------------------------------------~~A~~~~~l~~~~~~--------~~d~-~al~~~~~aL~ 634 (754)
..+-.|.+++-.+-+ .++. .|+.++-+++.
T Consensus 732 ~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~ 811 (1238)
T KOG1127|consen 732 SIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS 811 (1238)
T ss_pred cchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH
Confidence 111122222222111 0222 26668888888
Q ss_pred cCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHH
Q 004426 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLK 713 (754)
Q Consensus 635 l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~ 713 (754)
++.++-.+|+.+|.+ -.-|.+.-|.-+|-+++.++|.++-++.|+|.+.....+++-|-+.+.++++|+|++- +..-+
T Consensus 812 L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~ 890 (1238)
T KOG1127|consen 812 LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGE 890 (1238)
T ss_pred HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHH
Confidence 888888888888887 6668888888888888888888888888888888888888888888888888888876 44444
Q ss_pred HH
Q 004426 714 AY 715 (754)
Q Consensus 714 ~~ 715 (754)
|+
T Consensus 891 Al 892 (1238)
T KOG1127|consen 891 AL 892 (1238)
T ss_pred HH
Confidence 44
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.20 E-value=5.2e-10 Score=130.18 Aligned_cols=212 Identities=17% Similarity=0.081 Sum_probs=150.2
Q ss_pred CHHHHHHHHHHHHHccCCCHHHHHHhhhcCCh----hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 466 QQYSAYKLINSIISEHKPTGWMYQERSLYNLG----REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRI 541 (754)
Q Consensus 466 ~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g----~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rA 541 (754)
+...|...+-+++.+.+..|.+|...|.|.+- .-|..+|++|.+|||+++.++...+.++.+....++|.+..-++
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 35556677777777777777777777765433 34666777888888888888888888888888888777776666
Q ss_pred HHcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccc
Q 004426 542 IVFKLS---VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWS 618 (754)
Q Consensus 542 l~l~p~---~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~ 618 (754)
-+.+|. -..|..||..|.+.++.-+|+.+|+.|++.+|++ ..||..+++.+.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD-------------------------~n~W~gLGeAY~ 607 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD-------------------------YNLWLGLGEAYP 607 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchh-------------------------HHHHHHHHHHHH
Confidence 666663 1334457777777778888888888888888876 567777777777
Q ss_pred cccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH-------HHcCCH
Q 004426 619 SVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL-------YDTGHR 690 (754)
Q Consensus 619 ~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~l-------y~~G~~ 690 (754)
+-+++. |+.++++|..++|.+....|-.+.....+|.+++|+..+...+....+..-++..+|.++ +-+|=.
T Consensus 608 ~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~ 687 (1238)
T KOG1127|consen 608 ESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQ 687 (1238)
T ss_pred hcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 777777 777788888888877777777777777788888887777777777666555555555443 344556
Q ss_pred HHHHHHHHHHHh
Q 004426 691 EEALSRAEKSIS 702 (754)
Q Consensus 691 eeAl~~~e~Ai~ 702 (754)
-+|...++++|.
T Consensus 688 ~kavd~~eksie 699 (1238)
T KOG1127|consen 688 KKAVDFFEKSIE 699 (1238)
T ss_pred hhhhHHHHHHHH
Confidence 666666666654
No 88
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.19 E-value=4e-08 Score=121.64 Aligned_cols=284 Identities=11% Similarity=0.047 Sum_probs=169.5
Q ss_pred hhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhc---chhhhhhHHHHHHHhCCHHHHHHHH
Q 004426 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG---HIYSLAGLARAKYKVGQQYSAYKLI 474 (754)
Q Consensus 398 ~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~---~~~a~~~larv~~~~G~~~~A~~~~ 474 (754)
.+.+..++..+.+..... ....+..+-..+..+|++++|.+.|+.+.+.+ ...++..+...+.+.|+.++|...|
T Consensus 453 ~e~A~~lf~~M~~~Gl~p--D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKA--DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred HHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 334555665544321111 23445666677778888888888888777653 2345566667788888888888888
Q ss_pred HHHHHccC-CCHHHHHHh----hhcCChhhHHHHHHHHHh----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004426 475 NSIISEHK-PTGWMYQER----SLYNLGREKIVDLNYASE----LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK 545 (754)
Q Consensus 475 ~~aI~~~~-~~g~ay~~r----~~y~~g~eAl~dl~kAi~----LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~ 545 (754)
..+....- ++...|... +..+..++|...|....+ +.|+ ...|..+..+|.+.|++++|+..|+++.+.+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 87765432 223333222 122233778877777754 4564 5677888888888888888888888888764
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhcccccc
Q 004426 546 --LSVDCLELRAWLFIAADDYESALRDTLALLAL--ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVD 621 (754)
Q Consensus 546 --p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l--~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~ 621 (754)
|+...|......|.+.|++++|+..|+...+. .|+...| ..+.+.+...+
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty--------------------------nsLI~a~~k~G 663 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF--------------------------SALVDVAGHAG 663 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--------------------------HHHHHHHHhCC
Confidence 34566666777788888888888888887775 5653211 11111111222
Q ss_pred ccc-hHHHHHHHHHcC-CCChhHHHhHHHHHHHcCCHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q 004426 622 DIG-SLAVINQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN--HSSSEHERLVYEGWILYDTGHREEALSRA 697 (754)
Q Consensus 622 d~~-al~~~~~aL~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~--l~P~~~ea~~~~G~~ly~~G~~eeAl~~~ 697 (754)
+.+ |..++++|++.. +-+...|..+...+.+.|+.++|++.|+...+ +.|+ ...+..+-..+.+.|++++|+..+
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 222 355555555543 23445566666666666666666666665543 3443 345555555566666666666666
Q ss_pred HHHHh--cCCChHHHH
Q 004426 698 EKSIS--IERTFEAFF 711 (754)
Q Consensus 698 e~Ai~--l~~~~~a~~ 711 (754)
++... +.|+...|.
T Consensus 743 ~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 743 SEMKRLGLCPNTITYS 758 (1060)
T ss_pred HHHHHcCCCCCHHHHH
Confidence 65433 455555443
No 89
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.18 E-value=3.3e-08 Score=118.91 Aligned_cols=278 Identities=10% Similarity=-0.027 Sum_probs=171.3
Q ss_pred HHhhhhhhHhhccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHcc-CCCHHHHHHh----hhcC
Q 004426 421 ALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEH-KPTGWMYQER----SLYN 495 (754)
Q Consensus 421 Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~-~~~g~ay~~r----~~y~ 495 (754)
.+..+...|..+|++++|.+.|+.... ....+|..+...+...|+.++|...|.+..... .+....|... +..+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~-~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPE-KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCC-CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 344556677777788888777775433 234456666777777788877877777775542 1222233221 1122
Q ss_pred ChhhHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 496 LGREKIVDLNYASELD-PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLAL 574 (754)
Q Consensus 496 ~g~eAl~dl~kAi~Ld-P~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~a 574 (754)
..++|...+..+++.. +.+...|..+...|.+.|++++|...|++.. +|+...|+.....|.+.|+.++|+..|++.
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--RKNLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--CCCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2266666677666665 5566777777777777777777777777765 466666666667777777777777777776
Q ss_pred Hh--cCCCccccccchhhhHHHHHHhhhhccccc----------hhhhhhhhhccccccccc-hHHHHHHHHHcCCCChh
Q 004426 575 LA--LESNYMMFHGRVSGDHLVKLLNHHVRSWSP----------ADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSF 641 (754)
Q Consensus 575 l~--l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~----------A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~ 641 (754)
.+ +.||...|..=..+....+.++...+.++. ...+..+.+.+.+.++.+ |...++++ ...| ++.
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~ 495 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVN 495 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHH
Confidence 65 456654433322222222222221111111 111222222222333333 45555554 1233 345
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 642 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
.|..+-.+....|+.+.|...+++.+++.|++...|..++.++...|++++|...+++.-+.
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 57777777888888888888888888888888888888888888888888888888876643
No 90
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.17 E-value=4.7e-10 Score=129.20 Aligned_cols=144 Identities=12% Similarity=0.079 Sum_probs=108.5
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhcccccccc-chH
Q 004426 551 LELRAWLFIAADD---YESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDI-GSL 626 (754)
Q Consensus 551 ~~~ra~~~~~lgd---~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~-~al 626 (754)
++.||.-+...++ .+.|+..|++|+++||+|..++.-.+..+... ..|...+ -.+. .+.
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~------~~~~~~~-----------~~~l~~a~ 404 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVR------HSQQPLD-----------EKQLAALS 404 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH------HhcCCcc-----------HHHHHHHH
Confidence 3567776665555 77889999999999998855333322211111 1111000 0011 124
Q ss_pred HHHHHHHHc--CCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 627 AVINQMLIN--DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (754)
Q Consensus 627 ~~~~~aL~l--~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~ 704 (754)
....+++++ +|..+.+|.-+|......|++++|++.+++|++++| ++.+|..+|.++...|+.++|++.|++|+.++
T Consensus 405 ~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 405 TELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456677774 899999999999999999999999999999999999 58999999999999999999999999999999
Q ss_pred CChHHHHH
Q 004426 705 RTFEAFFL 712 (754)
Q Consensus 705 ~~~~a~~~ 712 (754)
|+++.|++
T Consensus 484 P~~pt~~~ 491 (517)
T PRK10153 484 PGENTLYW 491 (517)
T ss_pred CCCchHHH
Confidence 99997765
No 91
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.17 E-value=5.8e-10 Score=126.91 Aligned_cols=212 Identities=11% Similarity=0.025 Sum_probs=148.3
Q ss_pred hhhhhHhhccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHH
Q 004426 424 QLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVD 503 (754)
Q Consensus 424 ~LG~v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~d 503 (754)
.++..+..+|-..+|...|++ ...+.+...+|...|+...|-....+-++ .++.+..|..+|.. -.--+.
T Consensus 403 ~laell~slGitksAl~I~Er------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv---~~d~s~ 472 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFER------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV---LHDPSL 472 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHh------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh---ccChHH
Confidence 567778888888888888876 33455666778899988877777777777 77888888888654 222344
Q ss_pred HHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 504 LNYASELD-PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 504 l~kAi~Ld-P~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
|++|.++- -.++.|.++.|....+.++|++|..++++.++++| ..+.|+.+|.+..++++++.|..+|.+.+.++|++
T Consensus 473 yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~ 552 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN 552 (777)
T ss_pred HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc
Confidence 66666652 34556788888888889999999999999999999 58999999999999999999999999999988887
Q ss_pred cccccchhhhHHHHHHhhhhccccchhhhhhhhhcccccccc-chHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHH
Q 004426 582 MMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDI-GSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAM 660 (754)
Q Consensus 582 ~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~-~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl 660 (754)
..+.++.++.+.+ +++- +|-..+.+|+.-+-.+.-.|-|--.+..+.|.+++|+
T Consensus 553 ~eaWnNls~ayi~-------------------------~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 553 AEAWNNLSTAYIR-------------------------LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred hhhhhhhhHHHHH-------------------------HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence 3332222222221 1111 1344555555555555555555555555556665555
Q ss_pred HHHHHHHhcC
Q 004426 661 RCLRLARNHS 670 (754)
Q Consensus 661 ~~~~~Al~l~ 670 (754)
+.|.+.+.+.
T Consensus 608 ~A~~rll~~~ 617 (777)
T KOG1128|consen 608 KAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHhh
Confidence 5555555444
No 92
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=6.8e-08 Score=101.48 Aligned_cols=285 Identities=13% Similarity=0.063 Sum_probs=173.4
Q ss_pred hhhhHhhccchHHHHHHHHHHhhhcch--hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCC------------CHHHHHH
Q 004426 425 LGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKP------------TGWMYQE 490 (754)
Q Consensus 425 LG~v~~~~g~~~eA~~~f~~AL~~~~~--~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~------------~g~ay~~ 490 (754)
.|.-++...+.++|+..|-..++.++. .++.-+|+.+..+|..+.|+..-...+.. |+ +|.=|+.
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHH
Confidence 344445555566666666655555432 34555566666666666555544333322 21 1222222
Q ss_pred hhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH------HHHHHHHHHHHHcCCH
Q 004426 491 RSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV------DCLELRAWLFIAADDY 564 (754)
Q Consensus 491 r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~------~~~~~ra~~~~~lgd~ 564 (754)
-|++ +-|-..|+....-.---..|.-.+..+|....+++.||+.-.+...+.++. ..+-..+..+....+.
T Consensus 120 aGl~---DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 120 AGLL---DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred hhhh---hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 2333 445445544443322223455556666666666666666666666666531 1122355556666666
Q ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCC-hhHH
Q 004426 565 ESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK-SFLR 643 (754)
Q Consensus 565 ~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~-~~~~ 643 (754)
+.|+..+.+|++-||+. +.+...++.+.....++++| +..++++++-||.. ++..
T Consensus 197 d~A~~~l~kAlqa~~~c------vRAsi~lG~v~~~~g~y~~A------------------V~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 197 DRARELLKKALQADKKC------VRASIILGRVELAKGDYQKA------------------VEALERVLEQNPEYLSEVL 252 (389)
T ss_pred HHHHHHHHHHHhhCccc------eehhhhhhHHHHhccchHHH------------------HHHHHHHHHhChHHHHHHH
Confidence 66666666677766665 45555555555555555555 55566666666654 3456
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhccCC
Q 004426 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILADTNL 722 (754)
Q Consensus 644 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~~~~ 722 (754)
..+..++..+|++++.+..++++.+..+.. ++...+...-....-.++|-+...+=+.-+|+.- -+.+-.|-++|-+=
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccc
Confidence 667889999999999999999999999884 4556666666666667888889999999999998 56788999998764
Q ss_pred -CCCchhHHH-HHHHHHh
Q 004426 723 -DPESSTYVI-QLLEEAL 738 (754)
Q Consensus 723 -~~~~~~~~~-~~~~~~~ 738 (754)
-+-.|..++ .++-+-+
T Consensus 332 g~~k~sL~~lr~mvge~l 349 (389)
T COG2956 332 GRAKESLDLLRDMVGEQL 349 (389)
T ss_pred cchhhhHHHHHHHHHHHH
Confidence 233444433 3444443
No 93
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=2.4e-09 Score=121.81 Aligned_cols=207 Identities=14% Similarity=0.047 Sum_probs=162.9
Q ss_pred CHHHHHHhhhcCChhhHHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CC
Q 004426 484 TGWMYQERSLYNLGREKIVDLNYASEL--------DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK--------LS 547 (754)
Q Consensus 484 ~g~ay~~r~~y~~g~eAl~dl~kAi~L--------dP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~--------p~ 547 (754)
++.+|..++.| ++|..-+..|++. .|..+...++.|.+|+.++++.+|+..|++|+.+- |.
T Consensus 205 La~~y~~~g~~---e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 205 LAEMYAVQGRL---EKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHhccH---HHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 56777777666 8888888888887 77777777789999999999999999999999882 32
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ccccccchh-hhHHHHHHhhhhccccchhhhhhhhhccccccccc
Q 004426 548 -VDCLELRAWLFIAADDYESALRDTLALLALESN-YMMFHGRVS-GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG 624 (754)
Q Consensus 548 -~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~-~~~~~~~~~-~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~ 624 (754)
...+.+++.+|...|++++|...+++|+++--. +....++++ .......+......+++|. .++.+
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~---~l~q~-------- 350 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAK---KLLQK-------- 350 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHH---HHHHH--------
Confidence 244677899999999999999999999997654 111233443 4666777777788888884 22221
Q ss_pred hHHHHHHHHHcC-CCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcC--------CCchhHHHHHHHHHHHcCCHHHHHH
Q 004426 625 SLAVINQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS--------SSEHERLVYEGWILYDTGHREEALS 695 (754)
Q Consensus 625 al~~~~~aL~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~--------P~~~ea~~~~G~~ly~~G~~eeAl~ 695 (754)
++..+.++..-+ |.-+..+.|+|.++..+|+++||.+.|++|+... +..+-.++++|..+++.+++++|-+
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 344444444433 3667789999999999999999999999999775 4457789999999999999999999
Q ss_pred HHHHHHhcC
Q 004426 696 RAEKSISIE 704 (754)
Q Consensus 696 ~~e~Ai~l~ 704 (754)
.|++++.|.
T Consensus 431 l~~~~~~i~ 439 (508)
T KOG1840|consen 431 LFEEAKDIM 439 (508)
T ss_pred HHHHHHHHH
Confidence 999999984
No 94
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.14 E-value=6.3e-10 Score=123.03 Aligned_cols=112 Identities=12% Similarity=0.073 Sum_probs=93.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHH
Q 004426 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKL 596 (754)
Q Consensus 518 y~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~ 596 (754)
+...|..+...|++++|+..|++||+++|+ +..+++||.++..+|++++|+.++++|++++|++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--------------- 69 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL--------------- 69 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------
Confidence 456788888888999999999999999885 7778888888888898888888877777777754
Q ss_pred HhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 004426 597 LNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER 676 (754)
Q Consensus 597 l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 676 (754)
+.+|+++|.++..+|++++|+..|++|++++|++..+
T Consensus 70 -------------------------------------------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 70 -------------------------------------------AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred -------------------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4568888999999999999999999999999999988
Q ss_pred HHHHHHHHHHc
Q 004426 677 LVYEGWILYDT 687 (754)
Q Consensus 677 ~~~~G~~ly~~ 687 (754)
+..++.+...+
T Consensus 107 ~~~l~~~~~kl 117 (356)
T PLN03088 107 TKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHH
Confidence 88888776555
No 95
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=9.7e-09 Score=110.90 Aligned_cols=259 Identities=8% Similarity=-0.023 Sum_probs=185.8
Q ss_pred hhhhhHhhccchHHHHHHHHHHhhh-cc---hhhhhhHHHHHHHhCC--HHHHHHHHHHHHHccCCCHHHHHHhhh--c-
Q 004426 424 QLGCVMFEREEYKDACYYFEAAADA-GH---IYSLAGLARAKYKVGQ--QYSAYKLINSIISEHKPTGWMYQERSL--Y- 494 (754)
Q Consensus 424 ~LG~v~~~~g~~~eA~~~f~~AL~~-~~---~~a~~~larv~~~~G~--~~~A~~~~~~aI~~~~~~g~ay~~r~~--y- 494 (754)
+.+..++..|+++.|++.+. .++. +. ..+..++..+++.+|+ +..|......++..+.-++.+..+.|. |
T Consensus 424 ~ka~~~lk~~d~~~aieilk-v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 424 NKAGELLKNGDIEGAIEILK-VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA 502 (840)
T ss_pred hHHHHHHhccCHHHHHHHHH-HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence 45567888999999988764 3433 11 2344566667888775 455666667788888888888888875 2
Q ss_pred -CChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004426 495 -NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTL 572 (754)
Q Consensus 495 -~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd~~~Al~d~~ 572 (754)
+..++|..-|..|+.-|..-+++.+|.|..+-.+|+.++|+..|-+.-++-. +.+.++..+.+|.-+++..+|+..|.
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 3348999999999999999999999999999999999999999998777655 47888889999999999999999999
Q ss_pred HHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHH
Q 004426 573 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR 652 (754)
Q Consensus 573 ~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~ 652 (754)
++..+-|++ .+....++.+.....+-.+ |..++...-.--|.+.+.--.+|.-+..
T Consensus 583 q~~slip~d------p~ilskl~dlydqegdksq------------------afq~~ydsyryfp~nie~iewl~ayyid 638 (840)
T KOG2003|consen 583 QANSLIPND------PAILSKLADLYDQEGDKSQ------------------AFQCHYDSYRYFPCNIETIEWLAAYYID 638 (840)
T ss_pred HhcccCCCC------HHHHHHHHHHhhcccchhh------------------hhhhhhhcccccCcchHHHHHHHHHHHh
Confidence 999999998 3444444433333333322 3445555555566666666666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004426 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (754)
Q Consensus 653 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~ 707 (754)
..-.|.|+..+++|--+.|+-.-=..-.+.|+-..|+|++|+..|+...+.=|..
T Consensus 639 tqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 639 TQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 6666666666666666666665555556666666666666666666665554443
No 96
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.13 E-value=6.1e-08 Score=120.06 Aligned_cols=274 Identities=11% Similarity=0.034 Sum_probs=190.5
Q ss_pred HHHhhhhhhHhhccchHHHHHHHHHHhhhcc---hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccC-CCHHHHHHh----
Q 004426 420 LALHQLGCVMFEREEYKDACYYFEAAADAGH---IYSLAGLARAKYKVGQQYSAYKLINSIISEHK-PTGWMYQER---- 491 (754)
Q Consensus 420 ~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~---~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~-~~g~ay~~r---- 491 (754)
..|..+-..+...|++++|...|+.+.+.+. ...+..+-..+.+.|+.+.|...+..+..... ++...|...
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy 517 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC 517 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455555566777788888888877766532 23455566677778888888888877776432 222333222
Q ss_pred hhcCChhhHHHHHHHHHh--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHcCCHH
Q 004426 492 SLYNLGREKIVDLNYASE--LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV----FKLSVDCLELRAWLFIAADDYE 565 (754)
Q Consensus 492 ~~y~~g~eAl~dl~kAi~--LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~----l~p~~~~~~~ra~~~~~lgd~~ 565 (754)
...+..++|+..|+...+ +.|+ ...|..+..++.+.|++++|...|++..+ +.|+...+......|.+.|+++
T Consensus 518 ~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 518 ARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 122233777777776644 3453 56777788888888888888888887764 4666666666666777888888
Q ss_pred HHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHc--CCCChhH
Q 004426 566 SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLIN--DPGKSFL 642 (754)
Q Consensus 566 ~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l--~P~~~~~ 642 (754)
+|+..|+...+.+..- ....|..+...+...++.+ |+.+|++|.+. .|+ ...
T Consensus 597 eA~elf~~M~e~gi~p------------------------~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~T 651 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKG------------------------TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVF 651 (1060)
T ss_pred HHHHHHHHHHHcCCCC------------------------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHH
Confidence 8888888777765211 0112333333333345554 68899999887 454 678
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCChHHHHHHHHHhhc
Q 004426 643 RFRQSLLLLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSIS--IERTFEAFFLKAYILAD 719 (754)
Q Consensus 643 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~-P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~--l~~~~~a~~~~~~~~~~ 719 (754)
|..+...+.+.|+.++|++.++...+.. +-+...+..+...+.+.|++++|+..|++..+ +.|+...|.....++..
T Consensus 652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999865 33577899999999999999999999998765 68999888766666644
No 97
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=6.4e-09 Score=111.71 Aligned_cols=181 Identities=13% Similarity=0.046 Sum_probs=159.1
Q ss_pred hhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcch--hhhhhHHHHHHHhCCHHHHHHHHH
Q 004426 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLIN 475 (754)
Q Consensus 398 ~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~--~a~~~larv~~~~G~~~~A~~~~~ 475 (754)
.+++..+-++.++..+. +..++...|......|+.++|+-.|+.|+.+.|. ..+.|+-..|...|+..+|....+
T Consensus 316 ~~rAL~~~eK~I~~~~r---~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 316 FERALNFVEKCIDSEPR---NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred HHHHHHHHHHHhccCcc---cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 55666677777666543 3567888999999999999999999999999754 467788889999999999999999
Q ss_pred HHHHccCCCHHHHHHhh-hcC----Ch-hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHH
Q 004426 476 SIISEHKPTGWMYQERS-LYN----LG-REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD 549 (754)
Q Consensus 476 ~aI~~~~~~g~ay~~r~-~y~----~g-~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~ 549 (754)
.++...++.+.++.-.| ..+ .+ ++|..-+++++.++|....|-..+|..+...|++.++++-++++|..-|+--
T Consensus 393 ~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~ 472 (564)
T KOG1174|consen 393 WTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN 472 (564)
T ss_pred HHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH
Confidence 99999999988887775 222 22 7888899999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 550 CLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 550 ~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
.+..+|.++.+.+.+.+|+..|.+|+.+||++
T Consensus 473 LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 473 LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 78889999999999999999999999999997
No 98
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.09 E-value=2e-09 Score=103.81 Aligned_cols=110 Identities=11% Similarity=-0.039 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHH
Q 004426 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (754)
Q Consensus 548 ~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 627 (754)
.+..|..|..+...|++++|.+.|+.+..+||.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~---------------------------------------------- 68 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS---------------------------------------------- 68 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----------------------------------------------
Confidence 4667888888889999999888777766666654
Q ss_pred HHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Q 004426 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE--- 704 (754)
Q Consensus 628 ~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~--- 704 (754)
++.|+++|.++..+|++++|+..|.+|+.++|+++.+++|.|.|++..|+.++|.+.|+.||.+-
T Consensus 69 ------------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 69 ------------FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred ------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 57899999999999999999999999999999999999999999999999999999999999873
Q ss_pred CChHHHHHHHH
Q 004426 705 RTFEAFFLKAY 715 (754)
Q Consensus 705 ~~~~a~~~~~~ 715 (754)
|....---||-
T Consensus 137 ~~~~~l~~~A~ 147 (157)
T PRK15363 137 SEHQILRQRAE 147 (157)
T ss_pred hhHHHHHHHHH
Confidence 55555555543
No 99
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.09 E-value=5.6e-10 Score=123.43 Aligned_cols=96 Identities=17% Similarity=0.062 Sum_probs=88.7
Q ss_pred cccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 621 DDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 699 (754)
Q Consensus 621 ~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~ 699 (754)
+++. |+..|++||+++|+++.+|+++|.++.++|++++|+.++++|++++|+++.+++.+|.+++.+|++++|+..|++
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4454 788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChH-HHHHHHHH
Q 004426 700 SISIERTFE-AFFLKAYI 716 (754)
Q Consensus 700 Ai~l~~~~~-a~~~~~~~ 716 (754)
|+.++|++. +....+.+
T Consensus 96 al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 96 GASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHhCCCCHHHHHHHHHH
Confidence 999999988 54454444
No 100
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.07 E-value=9.1e-09 Score=105.64 Aligned_cols=175 Identities=14% Similarity=0.007 Sum_probs=109.6
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 500 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALE 578 (754)
Q Consensus 500 Al~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~ 578 (754)
+...+-++...+|++... .+++..+...|+-+.++....++.--.|+ ...+...|......|+|.+|+.-++++.+++
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 444455555666666666 66666666666666666665555444442 4444445555666666666666666666666
Q ss_pred CCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHH
Q 004426 579 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKA 658 (754)
Q Consensus 579 P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~ee 658 (754)
|++ ..++..++.......+.+.| -.-|.|++++.|+++...+|+|..+...|+.+.
T Consensus 131 p~d------~~~~~~lgaaldq~Gr~~~A------------------r~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~ 186 (257)
T COG5010 131 PTD------WEAWNLLGAALDQLGRFDEA------------------RRAYRQALELAPNEPSIANNLGMSLLLRGDLED 186 (257)
T ss_pred CCC------hhhhhHHHHHHHHccChhHH------------------HHHHHHHHHhccCCchhhhhHHHHHHHcCCHHH
Confidence 655 33344444333333333333 334666666666667777888888888888888
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 659 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 699 (754)
Q Consensus 659 Al~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~ 699 (754)
|...+..|...-+.+.-+..|+..+.-..|++++|-....+
T Consensus 187 A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 187 AETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 88888888877777777888888888888888877654443
No 101
>PLN03077 Protein ECB2; Provisional
Probab=99.07 E-value=3e-08 Score=122.06 Aligned_cols=250 Identities=9% Similarity=0.005 Sum_probs=159.7
Q ss_pred HHHhhhhhhHhhccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHh-------h
Q 004426 420 LALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQER-------S 492 (754)
Q Consensus 420 ~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r-------~ 492 (754)
..+..+...|..+|++++|.+.|++..+. ...+|..+...+...|+.++|+..|.+++....++...|... +
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhc
Confidence 45566777888999999999999875443 334666777788888999999998888876543333222111 0
Q ss_pred --------------------------------hcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 493 --------------------------------LYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDR 540 (754)
Q Consensus 493 --------------------------------~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~r 540 (754)
..+.-++|+..|+.. +.+...|+.+...|.+.|+.++|+..|++
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 011225555555554 34555666666666666666666666666
Q ss_pred HHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhh
Q 004426 541 IIV--FKLSVDCLELRAWLFIAADDYESALRDTLALLA---LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYD 615 (754)
Q Consensus 541 Al~--l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~---l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~ 615 (754)
.++ +.|+...+...-.++...|++++|...|+...+ +.|+-. . ..|++.++
T Consensus 580 M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~-------~----------------y~~lv~~l- 635 (857)
T PLN03077 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK-------H----------------YACVVDLL- 635 (857)
T ss_pred HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH-------H----------------HHHHHHHH-
Confidence 555 345444444444455666666666666666552 344321 1 11222222
Q ss_pred ccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHH
Q 004426 616 RWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 694 (754)
Q Consensus 616 ~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 694 (754)
.+.++.+ |...++++ .+.|+ +..|..+-.+...-|+.+.|....+++++++|+++..++.+++++...|++++|.
T Consensus 636 --~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 636 --GRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred --HhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence 2223333 46666665 35565 4556555556677889999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 004426 695 SRAEKSIS 702 (754)
Q Consensus 695 ~~~e~Ai~ 702 (754)
+..+.-.+
T Consensus 712 ~vr~~M~~ 719 (857)
T PLN03077 712 RVRKTMRE 719 (857)
T ss_pred HHHHHHHH
Confidence 88776644
No 102
>PRK11906 transcriptional regulator; Provisional
Probab=99.07 E-value=1.6e-09 Score=119.81 Aligned_cols=154 Identities=14% Similarity=0.057 Sum_probs=117.4
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHH---hcCCCccccccchhhhHHHHHHhhhhccccchhhhhhh-hhccccc--cc
Q 004426 552 ELRAWLFIAAD---DYESALRDTLALL---ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKL-YDRWSSV--DD 622 (754)
Q Consensus 552 ~~ra~~~~~lg---d~~~Al~d~~~al---~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l-~~~~~~~--~d 622 (754)
+.||..+...+ +.+.|+..|++|+ ++||+|..+++-.+- |+++. .-.|+.. +.
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~------------------~h~~~~~~g~~~~~~~~ 320 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAE------------------CHMSLALHGKSELELAA 320 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHH------------------HHHHHHHhcCCCchHHH
Confidence 55665443322 4567777788888 888887543333332 22232 3333331 22
Q ss_pred cchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 623 IGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (754)
Q Consensus 623 ~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~ 702 (754)
.+++...++|+++||.++.+++..|.++...++++.|+..+++|+.++|+++.++++.||++.-.|+.++|++..++|++
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 23677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChH-HHHHHHHH--hhccCCC
Q 004426 703 IERTFE-AFFLKAYI--LADTNLD 723 (754)
Q Consensus 703 l~~~~~-a~~~~~~~--~~~~~~~ 723 (754)
+.|.=. |=-+|-.. +.-+.||
T Consensus 401 LsP~~~~~~~~~~~~~~~~~~~~~ 424 (458)
T PRK11906 401 LEPRRRKAVVIKECVDMYVPNPLK 424 (458)
T ss_pred cCchhhHHHHHHHHHHHHcCCchh
Confidence 999876 55565544 4444454
No 103
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.07 E-value=2.7e-07 Score=104.15 Aligned_cols=289 Identities=13% Similarity=0.004 Sum_probs=211.5
Q ss_pred HHHHHHHhhh-chhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcchh--hhhhHHHHHHHhCCHHHHHHHHHHH
Q 004426 401 TVMLLERLGE-CSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIY--SLAGLARAKYKVGQQYSAYKLINSI 477 (754)
Q Consensus 401 ~v~LLer~vr-~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~--a~~~larv~~~~G~~~~A~~~~~~a 477 (754)
...+|++++. ||. ....+.-.+..+...|+.-.|.....+|.+.++.. .+..--.+.+....++.|...+.++
T Consensus 569 l~Allqkav~~~pk----ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 569 LEALLQKAVEQCPK----AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred HHHHHHHHHHhCCc----chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 4456666654 432 11223334455667788888888888888885543 3333334555667788899999888
Q ss_pred HHccCC-CHHHHHHhhh-c-CChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHH
Q 004426 478 ISEHKP-TGWMYQERSL-Y-NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLEL 553 (754)
Q Consensus 478 I~~~~~-~g~ay~~r~~-y-~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ 553 (754)
-...+. .-||-...-. | ...++|+.-++.+++.-|++...|+.+|.++.++++.+.|-+.|..-++.-|+ ...|..
T Consensus 645 r~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 645 RSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred hccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 766553 2233222211 1 12289999999999999999999999999999999999999999999999997 788888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHH
Q 004426 554 RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML 633 (754)
Q Consensus 554 ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL 633 (754)
.+.+-.+.|..-.|...++++.--||++.. .....-..+......++| -..+-+||
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~------lwle~Ir~ElR~gn~~~a------------------~~lmakAL 780 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNAL------LWLESIRMELRAGNKEQA------------------ELLMAKAL 780 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcch------hHHHHHHHHHHcCCHHHH------------------HHHHHHHH
Confidence 999999999999999999999999999832 111111111222222333 45789999
Q ss_pred HcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH---HH
Q 004426 634 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE---AF 710 (754)
Q Consensus 634 ~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~---a~ 710 (754)
+-.|+++.+|.-.=.+--+-+| ......|++.--+|+..+...|-.++....+++|...|+||+.++|++. ||
T Consensus 781 Qecp~sg~LWaEaI~le~~~~r----kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~ 856 (913)
T KOG0495|consen 781 QECPSSGLLWAEAIWLEPRPQR----KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAW 856 (913)
T ss_pred HhCCccchhHHHHHHhccCccc----chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHH
Confidence 9999999999654333333344 3445677777788888999999999999999999999999999999987 89
Q ss_pred HHHHHHhhccC
Q 004426 711 FLKAYILADTN 721 (754)
Q Consensus 711 ~~~~~~~~~~~ 721 (754)
|+|-+...-+-
T Consensus 857 fykfel~hG~e 867 (913)
T KOG0495|consen 857 FYKFELRHGTE 867 (913)
T ss_pred HHHHHHHhCCH
Confidence 99988876543
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.06 E-value=4.4e-08 Score=121.05 Aligned_cols=269 Identities=13% Similarity=0.044 Sum_probs=184.8
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhhcc-------hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCC-------
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGH-------IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPT------- 484 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~-------~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~------- 484 (754)
......+|.++...|++++|...+++++...+ ..+...+|.++...|++++|...+.+++......
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 33445678888999999999999999987411 1244567778889999999999999988654321
Q ss_pred ------HHHHHHhhhcCChhhHHHHHHHHHhhCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----
Q 004426 485 ------GWMYQERSLYNLGREKIVDLNYASELDP--------TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL---- 546 (754)
Q Consensus 485 ------g~ay~~r~~y~~g~eAl~dl~kAi~LdP--------~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p---- 546 (754)
+.++..+| ...+|...+++++.+-. .....+..+|.++...|++++|.+.+++++.+..
T Consensus 532 ~~~~~la~~~~~~G---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 608 (903)
T PRK04841 532 WSLLQQSEILFAQG---FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP 608 (903)
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc
Confidence 22223332 33888888888887622 2244567889999999999999999999988632
Q ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccccc-chhhhHHHHHHhhhhccccchhhhhhhhhcccccccc
Q 004426 547 S--VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHG-RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDI 623 (754)
Q Consensus 547 ~--~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~-~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~ 623 (754)
. ...+..++.++...|++++|.+.++++.++.+....... ................+.+.|..|
T Consensus 609 ~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~------------- 675 (903)
T PRK04841 609 QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANW------------- 675 (903)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHH-------------
Confidence 1 333455788999999999999999999887654311000 000000011111123334444322
Q ss_pred chHHHHHHHHHcCCCCh----hHHHhHHHHHHHcCCHHHHHHHHHHHHhcCC------CchhHHHHHHHHHHHcCCHHHH
Q 004426 624 GSLAVINQMLINDPGKS----FLRFRQSLLLLRLNCQKAAMRCLRLARNHSS------SEHERLVYEGWILYDTGHREEA 693 (754)
Q Consensus 624 ~al~~~~~aL~l~P~~~----~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P------~~~ea~~~~G~~ly~~G~~eeA 693 (754)
+.+.....+... ..+..+|.++..+|++++|...+++|++... +.+.++..+|.+++..|+.++|
T Consensus 676 -----l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 676 -----LRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred -----HHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 222222222222 2256789999999999999999999998732 3456889999999999999999
Q ss_pred HHHHHHHHhcCCChH
Q 004426 694 LSRAEKSISIERTFE 708 (754)
Q Consensus 694 l~~~e~Ai~l~~~~~ 708 (754)
...+++|+++-....
T Consensus 751 ~~~L~~Al~la~~~g 765 (903)
T PRK04841 751 QRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHHhCccc
Confidence 999999999854433
No 105
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.05 E-value=4.8e-10 Score=93.30 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=65.5
Q ss_pred ChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 004426 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG-HREEALSRAEKSISIER 705 (754)
Q Consensus 639 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G-~~eeAl~~~e~Ai~l~~ 705 (754)
++..|+++|.++..+|++++|+..|++|++++|+++.+++++|.+++.+| ++++|++.+++|++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 67899999999999999999999999999999999999999999999999 79999999999999998
No 106
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.05 E-value=5.3e-08 Score=117.18 Aligned_cols=193 Identities=9% Similarity=-0.040 Sum_probs=116.5
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV--FKLSVDCLELRAWLFIAADDYESALRDTLALL 575 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~--l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al 575 (754)
++|...|++. .+.+...|+.+...|.+.|++++|+..|++..+ +.|+...+.....++...|++++|...+..++
T Consensus 276 ~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~ 352 (697)
T PLN03081 276 EDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352 (697)
T ss_pred HHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 5555555543 334555666666666666666666666666544 24454455555555666666666666666665
Q ss_pred hcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcC
Q 004426 576 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLN 654 (754)
Q Consensus 576 ~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg 654 (754)
+..... ....+..+.+.+...++++ |..+|+++.+ .+...|+.+...+.+.|
T Consensus 353 ~~g~~~------------------------d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 353 RTGFPL------------------------DIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHG 405 (697)
T ss_pred HhCCCC------------------------CeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcC
Confidence 543110 0112223333333344544 5777777754 25667888888888888
Q ss_pred CHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCChHHHHHHHHHhhccC
Q 004426 655 CQKAAMRCLRLARN--HSSSEHERLVYEGWILYDTGHREEALSRAEKSIS---IERTFEAFFLKAYILADTN 721 (754)
Q Consensus 655 ~~eeAl~~~~~Al~--l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~---l~~~~~a~~~~~~~~~~~~ 721 (754)
+.++|++.+++..+ ..|| ...+..+-.++...|.+++|+..|++..+ +.|+.+.|....-.|+..+
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 88888888887665 4455 33455566667777888888888877753 5777777766666666554
No 107
>PLN03077 Protein ECB2; Provisional
Probab=99.03 E-value=6.2e-08 Score=119.25 Aligned_cols=289 Identities=10% Similarity=-0.035 Sum_probs=179.5
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHcc--CC---CHHHHHHhhh
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEH--KP---TGWMYQERSL 493 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~--~~---~g~ay~~r~~ 493 (754)
...+..+...|..+|++++|.+.|++... +...+|..+...+.+.|++++|+..|.++.... |+ +..+....+.
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence 34567788889999999999999987543 234567777888899999999999999876543 33 2222222223
Q ss_pred cCChhhHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004426 494 YNLGREKIVDLNYASELDPT-LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTL 572 (754)
Q Consensus 494 y~~g~eAl~dl~kAi~LdP~-~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~ 572 (754)
.+..++|.+.+..+++.... +...|..+...|.+.|++++|...|++.. +++...|......|...|++++|+..|+
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP--EKDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 33447888888888876543 46678888899999999999999998875 5666667777778888999999999999
Q ss_pred HHHh-cCCCccccccchhhhHHHHHHhhhhccccch------------hhhhhhhhccccccccc-hHHHHHHHHHcCCC
Q 004426 573 ALLA-LESNYMMFHGRVSGDHLVKLLNHHVRSWSPA------------DCWIKLYDRWSSVDDIG-SLAVINQMLINDPG 638 (754)
Q Consensus 573 ~al~-l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A------------~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~ 638 (754)
+.++ +.|+...+..-..+....+.++...+-+..+ .+++..|-+ -++.+ |...|+++ +.
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k---~G~~~~A~~~f~~~----~~ 552 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR---CGRMNYAWNQFNSH----EK 552 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH---cCCHHHHHHHHHhc----CC
Confidence 8875 4576654444444333333333222222111 112222222 22222 34455554 44
Q ss_pred ChhHHHhHHHHHHHcCCHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCChHHHHHH
Q 004426 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARN--HSSSEHERLVYEGWILYDTGHREEALSRAEKSI---SIERTFEAFFLK 713 (754)
Q Consensus 639 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~--l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai---~l~~~~~a~~~~ 713 (754)
+...|+.+...+.+.|+.++|++.|++..+ +.||.. .+..+=..+...|++++|+..|++.. .+.|+.+.|...
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 556666666666666666666666665554 344432 33333344555566666666666654 246665555544
Q ss_pred HHHhh
Q 004426 714 AYILA 718 (754)
Q Consensus 714 ~~~~~ 718 (754)
..+|+
T Consensus 632 v~~l~ 636 (857)
T PLN03077 632 VDLLG 636 (857)
T ss_pred HHHHH
Confidence 44333
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.03 E-value=9.5e-09 Score=105.52 Aligned_cols=144 Identities=12% Similarity=0.077 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
+.++....++.-..|.+.......|....+.|++.+|+..++||..++|+ ++.|..+|.+|.+.||+++|...|.++++
T Consensus 83 ~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~ 162 (257)
T COG5010 83 DSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE 162 (257)
T ss_pred cchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH
Confidence 33444444444445555555555555555555555555555555555552 55555555555555555555555555555
Q ss_pred cCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCC
Q 004426 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNC 655 (754)
Q Consensus 577 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~ 655 (754)
+.|+.....+|.+..+.+. +|.+ |...+..+-..-|.+.....|++.++-.+|+
T Consensus 163 L~~~~p~~~nNlgms~~L~-------------------------gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 163 LAPNEPSIANNLGMSLLLR-------------------------GDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD 217 (257)
T ss_pred hccCCchhhhhHHHHHHHc-------------------------CCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC
Confidence 5555544444433333221 2222 3445555555556667778889999999999
Q ss_pred HHHHHHHHHHH
Q 004426 656 QKAAMRCLRLA 666 (754)
Q Consensus 656 ~eeAl~~~~~A 666 (754)
+++|..+..+=
T Consensus 218 ~~~A~~i~~~e 228 (257)
T COG5010 218 FREAEDIAVQE 228 (257)
T ss_pred hHHHHhhcccc
Confidence 99998876553
No 109
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.02 E-value=1.1e-09 Score=91.21 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=63.9
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 004426 513 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAAD-DYESALRDTLALLALES 579 (754)
Q Consensus 513 ~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lg-d~~~Al~d~~~al~l~P 579 (754)
+++..|.++|.++..+|++++|+..|++||+++|+ +..++++|.++..+| ++++|+.+|+++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 36789999999999999999999999999999997 888999999999999 79999999999999999
No 110
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.01 E-value=2.2e-10 Score=120.07 Aligned_cols=221 Identities=13% Similarity=0.063 Sum_probs=156.8
Q ss_pred CHHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcC
Q 004426 484 TGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAAD 562 (754)
Q Consensus 484 ~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lg 562 (754)
-|.-|+.+|.| ++|+.+|.+++.++|.++-.|.|||.+|.+++++..|..|++.||.|+-. ..+|..|+.+...+|
T Consensus 103 ~GN~yFKQgKy---~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKY---EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccch---hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45566666666 89999999999999999999999999999999999999999999998876 466677889999999
Q ss_pred CHHHHHHHHHHHHhcCCCccccccc---hhhhHHHHHHhhhhccccchh-hhhhhh-hccccc-----cccc-hHHHHHH
Q 004426 563 DYESALRDTLALLALESNYMMFHGR---VSGDHLVKLLNHHVRSWSPAD-CWIKLY-DRWSSV-----DDIG-SLAVINQ 631 (754)
Q Consensus 563 d~~~Al~d~~~al~l~P~~~~~~~~---~~~~~~~~~l~~~~~~~~~A~-~~~~l~-~~~~~~-----~d~~-al~~~~~ 631 (754)
...+|-.||+.+|+|+|+....--. ..-......+...-.-+..|. ...|.. .+-..+ ..+. ++.+|-+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~ 259 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVS 259 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeec
Confidence 9999999999999999986431111 110111111111110011110 001111 110111 1111 4556677
Q ss_pred HHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 632 MLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 632 aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
.++-+-.+..+..+ +..+.+.-.+++|+-...+++.++|..--+.-.+|.+---.|...|+-+.++-++.+.|..+
T Consensus 260 ~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~ 335 (536)
T KOG4648|consen 260 PRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVE 335 (536)
T ss_pred cccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccc
Confidence 77777777777777 77888888888888888888888888888888888888888888888888888888888766
No 111
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.99 E-value=6.3e-08 Score=109.37 Aligned_cols=295 Identities=14% Similarity=0.055 Sum_probs=204.2
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhh--cchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCC
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADA--GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 496 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~--~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~ 496 (754)
-.+++....-..+.++|....+..+..++. .|..+++-.|..+..+|+.++|+.....++..++..+..|...|.+.+
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 345555666667788898888888877776 466777878888999999999999999999988887777776665443
Q ss_pred h----hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHcCCHHHHHHHH
Q 004426 497 G----REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-DCLELRAWLFIAADDYESALRDT 571 (754)
Q Consensus 497 g----~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~-~~~~~ra~~~~~lgd~~~Al~d~ 571 (754)
. .+|+.+|..|+.++|+|-..|..++....++++++.....-++.++++|+. ..|...+..+.-.|++..|+.-.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 899999999999999999999999999999999999999999999999974 44556777889999999998877
Q ss_pred HHHHhcC---CCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCC---ChhHHHh
Q 004426 572 LALLALE---SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG---KSFLRFR 645 (754)
Q Consensus 572 ~~al~l~---P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~---~~~~~~~ 645 (754)
+.-.... |+.. .......+....+-..++ +..+ ..++.-+...|. ..-....
T Consensus 167 ~ef~~t~~~~~s~~-------~~e~se~~Ly~n~i~~E~-------------g~~q--~ale~L~~~e~~i~Dkla~~e~ 224 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKE-------DYEHSELLLYQNQILIEA-------------GSLQ--KALEHLLDNEKQIVDKLAFEET 224 (700)
T ss_pred HHHHHhhccCCCHH-------HHHHHHHHHHHHHHHHHc-------------ccHH--HHHHHHHhhhhHHHHHHHHhhh
Confidence 7666654 3321 111111111111111111 1000 011111222221 2233456
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhccCCC
Q 004426 646 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILY-DTGHREEALSRAEKSISIERTFE-AFFLKAYILADTNLD 723 (754)
Q Consensus 646 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly-~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~~~~~ 723 (754)
+|.++.+++++|+|...|+.-+..+|||.+=+..+-.++. -++..+.=-..|.+.-+.=|-++ .=++=-..+.+.++-
T Consensus 225 ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~ 304 (700)
T KOG1156|consen 225 KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELK 304 (700)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhH
Confidence 8999999999999999999999999999987777766774 44444333377777776666665 333334455556655
Q ss_pred CCchhHHHHHHH
Q 004426 724 PESSTYVIQLLE 735 (754)
Q Consensus 724 ~~~~~~~~~~~~ 735 (754)
-.-+.++.++|+
T Consensus 305 ~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 305 EIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHHHHHhh
Confidence 444455444443
No 112
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=7.9e-08 Score=104.04 Aligned_cols=258 Identities=12% Similarity=0.008 Sum_probs=210.7
Q ss_pred HHHHhhhhhhHhhc--cchHHHHHHHHHHhhhc--chhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc
Q 004426 419 MLALHQLGCVMFER--EEYKDACYYFEAAADAG--HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY 494 (754)
Q Consensus 419 a~Al~~LG~v~~~~--g~~~eA~~~f~~AL~~~--~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y 494 (754)
..+-.+|...++.+ +++.+|..+-+.|+.++ ...+..+-|++.+..|+++.|...|..++.-+...-.++++-|+.
T Consensus 454 saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt 533 (840)
T KOG2003|consen 454 SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLT 533 (840)
T ss_pred HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhccc
Confidence 34556777776664 47888988888888884 345677888899999999999999999998887777777777653
Q ss_pred ----CChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 004426 495 ----NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALR 569 (754)
Q Consensus 495 ----~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~ 569 (754)
+..++|++.|-+.-.+--++++..+.++++|--+.+..+||+-+-++..+-|+ |..+..++-+|.+.||-.+|.+
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq 613 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQ 613 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhh
Confidence 23389999999888888899999999999999999999999999999999995 8889999999999999999999
Q ss_pred HHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHH
Q 004426 570 DTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLL 649 (754)
Q Consensus 570 d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~ 649 (754)
++=..-+.-|-++.-+--.++++ -.-+.|++| +..+++|--+.|+.+.-....+.|
T Consensus 614 ~~ydsyryfp~nie~iewl~ayy------idtqf~eka------------------i~y~ekaaliqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 614 CHYDSYRYFPCNIETIEWLAAYY------IDTQFSEKA------------------INYFEKAALIQPNQSKWQLMIASC 669 (840)
T ss_pred hhhhcccccCcchHHHHHHHHHH------HhhHHHHHH------------------HHHHHHHHhcCccHHHHHHHHHHH
Confidence 99888888887744332223332 334455555 788999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC--HHHHHHHHHHH
Q 004426 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH--REEALSRAEKS 700 (754)
Q Consensus 650 L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~--~eeAl~~~e~A 700 (754)
+-+.|.++.|...|+..-+.-|.+.+-+..+--+--++|- +.|=-.+.+++
T Consensus 670 ~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~key~~klek~ 722 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKEYADKLEKA 722 (840)
T ss_pred HHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 9999999999999999999999999999888777777763 34444444444
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.98 E-value=6.2e-09 Score=124.59 Aligned_cols=155 Identities=11% Similarity=-0.041 Sum_probs=139.0
Q ss_pred HHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccc
Q 004426 507 ASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFH 585 (754)
Q Consensus 507 Ai~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~ 585 (754)
+..++|.+..++..++.++..+|++++|+..++.+++..|+ ...++..|.++.+.+++++|... .++.+-|+.
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~---- 96 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN---- 96 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc----
Confidence 56789999999999999999999999999999999999997 78889999999999998888776 666666654
Q ss_pred cchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHH
Q 004426 586 GRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRL 665 (754)
Q Consensus 586 ~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~ 665 (754)
.+..++..+.+.+.-.|.+-.+++.+|.|+.++|+.++|.+.|++
T Consensus 97 -----------------------------------~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer 141 (906)
T PRK14720 97 -----------------------------------LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWER 141 (906)
T ss_pred -----------------------------------cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 222336677777778999999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 666 ARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 666 Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
+++++|+|+.+++|+|-.|-.. ++++|.+.|.+|+..
T Consensus 142 ~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 142 LVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999886
No 114
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.97 E-value=3.3e-08 Score=111.56 Aligned_cols=235 Identities=17% Similarity=0.142 Sum_probs=174.3
Q ss_pred HHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhh--cCCh--hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004426 461 KYKVGQQYSAYKLINSIISEHKPTGWMYQERSL--YNLG--REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAIS 536 (754)
Q Consensus 461 ~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~--y~~g--~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~ 536 (754)
.+..++|.........++...|..|..+.-.|+ ++.| ++|...-..+++-||....-|.-+|.++...++|+|||.
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 355677777888889999999999888877663 5555 899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc-cccchhhhHHHHHHhhhhccccchhhhhhhh
Q 004426 537 EIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMM-FHGRVSGDHLVKLLNHHVRSWSPADCWIKLY 614 (754)
Q Consensus 537 ~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~-~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~ 614 (754)
+|+.|+.+.|+ ...+.-.+.+-.+++|++.....=.+.++++|.+.+ .+|-.-+..+.+.-..+....
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il---------- 166 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL---------- 166 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 99999999996 688888999999999999999999999999998755 333333444433222222221
Q ss_pred hccccccccchHHHHHHHHHcCCCC-----hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC
Q 004426 615 DRWSSVDDIGSLAVINQMLINDPGK-----SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH 689 (754)
Q Consensus 615 ~~~~~~~d~~al~~~~~aL~l~P~~-----~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~ 689 (754)
..+.+-..-.|.. .++...+...+...|.+++|++.+..-=..--|.---.-.+|.++.++|+
T Consensus 167 ------------~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 167 ------------EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQ 234 (700)
T ss_pred ------------HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhh
Confidence 1222222211222 22334455566777887777766544322222223334567899999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHh
Q 004426 690 REEALSRAEKSISIERTFEAFFLKAYIL 717 (754)
Q Consensus 690 ~eeAl~~~e~Ai~l~~~~~a~~~~~~~~ 717 (754)
+++|...|+.-|..+|+.-+|+......
T Consensus 235 lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 235 LEEAVKVYRRLLERNPDNLDYYEGLEKA 262 (700)
T ss_pred HHhHHHHHHHHHhhCchhHHHHHHHHHH
Confidence 9999999999999999999988665443
No 115
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.97 E-value=7.6e-09 Score=99.78 Aligned_cols=107 Identities=10% Similarity=-0.024 Sum_probs=80.6
Q ss_pred HHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc
Q 004426 506 YASELD-PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMM 583 (754)
Q Consensus 506 kAi~Ld-P~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~ 583 (754)
.....+ |+.-+..+.+|..+.+.|++++|...|+-+..++|. +..|+++|.++..+|+|++|+..|.+|+.++|++
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-- 102 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-- 102 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--
Confidence 345555 666677777788888888888888888888888884 6777778888888888888877776666666654
Q ss_pred cccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHH
Q 004426 584 FHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCL 663 (754)
Q Consensus 584 ~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~ 663 (754)
+..+++.|.+++++|+.++|+..|
T Consensus 103 --------------------------------------------------------p~~~~~ag~c~L~lG~~~~A~~aF 126 (157)
T PRK15363 103 --------------------------------------------------------PQAPWAAAECYLACDNVCYAIKAL 126 (157)
T ss_pred --------------------------------------------------------chHHHHHHHHHHHcCCHHHHHHHH
Confidence 566777888888888888888888
Q ss_pred HHHHhcC
Q 004426 664 RLARNHS 670 (754)
Q Consensus 664 ~~Al~l~ 670 (754)
+.|++..
T Consensus 127 ~~Ai~~~ 133 (157)
T PRK15363 127 KAVVRIC 133 (157)
T ss_pred HHHHHHh
Confidence 8888776
No 116
>PRK11906 transcriptional regulator; Provisional
Probab=98.97 E-value=1.9e-08 Score=111.32 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhH
Q 004426 563 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL 642 (754)
Q Consensus 563 d~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~ 642 (754)
+..+|++.-++|+++||+++ .+....+.+.....+++.| .+.++||++++|+.+.+
T Consensus 319 ~~~~a~~~A~rAveld~~Da------~a~~~~g~~~~~~~~~~~a------------------~~~f~rA~~L~Pn~A~~ 374 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDG------KILAIMGLITGLSGQAKVS------------------HILFEQAKIHSTDIASL 374 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHhhcchhhH------------------HHHHHHHhhcCCccHHH
Confidence 34556666666666666663 2333333333333333333 56677777777778889
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH-HHHcCCHHHHHHHHHHH
Q 004426 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI-LYDTGHREEALSRAEKS 700 (754)
Q Consensus 643 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~-ly~~G~~eeAl~~~e~A 700 (754)
|+..|.++..-|+.++|++.+++|++++|.-.-|-...-|+ .|.....++|++.|-+-
T Consensus 375 ~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 375 YYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence 99999999999999999999999999999999999999999 99999999999988653
No 117
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.92 E-value=1.5e-08 Score=100.23 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=37.2
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCh
Q 004426 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH--------------REEALSRAEKSISIERTF 707 (754)
Q Consensus 642 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~--------------~eeAl~~~e~Ai~l~~~~ 707 (754)
+++++|.++.++|++++|+..+++|++..|++..++.++|+++...|+ +++|++.+++++.++|+.
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 344455555555555555555555555555555555555555555444 566777777777776665
No 118
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.92 E-value=7.5e-08 Score=110.67 Aligned_cols=199 Identities=14% Similarity=0.001 Sum_probs=133.1
Q ss_pred hhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH-----HcCCHHHHHHH
Q 004426 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCL-ELRAWLFI-----AADDYESALRD 570 (754)
Q Consensus 497 g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~-~~ra~~~~-----~lgd~~~Al~d 570 (754)
.++|++.+++....=+|....+-.||.+++.+|++++|...|...|..||+...+ .....++. .-++.+.-.+.
T Consensus 20 ~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~ 99 (517)
T PF12569_consen 20 YEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLEL 99 (517)
T ss_pred HHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHH
Confidence 3788888888888888888888888888888888888888888888888864333 33333331 12256677777
Q ss_pred HHHHHhcCCCccccccchh------------------------hhHHHHHHhhhhccccchhhhhhhhhccccccccchH
Q 004426 571 TLALLALESNYMMFHGRVS------------------------GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSL 626 (754)
Q Consensus 571 ~~~al~l~P~~~~~~~~~~------------------------~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al 626 (754)
|+...+..|..... -|.. +-.+...+.....+.+++++..++..
T Consensus 100 y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~----------- 167 (517)
T PF12569_consen 100 YDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE----------- 167 (517)
T ss_pred HHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH-----------
Confidence 88777777764321 0110 11111112222222222221111111
Q ss_pred HHHHHHHH------------cCCCCh--hHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHH
Q 004426 627 AVINQMLI------------NDPGKS--FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREE 692 (754)
Q Consensus 627 ~~~~~aL~------------l~P~~~--~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~ee 692 (754)
.+...++ ..|-.. .+++.+|-.+..+|++++|+..+++||++.|..+|.|...|-+|-..|++++
T Consensus 168 -~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 168 -EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred -HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 2222222 123333 4568889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChH
Q 004426 693 ALSRAEKSISIERTFE 708 (754)
Q Consensus 693 Al~~~e~Ai~l~~~~~ 708 (754)
|....+.|-.+++..-
T Consensus 247 Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 247 AAEAMDEARELDLADR 262 (517)
T ss_pred HHHHHHHHHhCChhhH
Confidence 9999999999988654
No 119
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.91 E-value=2.1e-08 Score=98.76 Aligned_cols=121 Identities=14% Similarity=0.089 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccch
Q 004426 531 IRAAISEIDRIIVFKLS---VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPA 607 (754)
Q Consensus 531 ~~eAl~~~~rAl~l~p~---~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A 607 (754)
+..+.+.+.+.+..++. ...++..|.++..+|++++|+..|++++.+.|+.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-------------------------- 68 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-------------------------- 68 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc--------------------------
Confidence 45555555555545442 3455667778888888888888888888877653
Q ss_pred hhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH--
Q 004426 608 DCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILY-- 685 (754)
Q Consensus 608 ~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly-- 685 (754)
+..+.+|+++|.++..+|++++|+..+++|++++|++++.+.++|.+++
T Consensus 69 -----------------------------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 69 -----------------------------YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred -----------------------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 0123467888999999999999999999999999999999989998888
Q ss_pred -----HcCCHHH-------HHHHHHHHHhcCCC
Q 004426 686 -----DTGHREE-------ALSRAEKSISIERT 706 (754)
Q Consensus 686 -----~~G~~ee-------Al~~~e~Ai~l~~~ 706 (754)
.+|++++ |+..|++++..+|.
T Consensus 120 ~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 120 GEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred hHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 7777764 44455555556654
No 120
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.91 E-value=3.8e-09 Score=116.76 Aligned_cols=101 Identities=19% Similarity=0.102 Sum_probs=84.5
Q ss_pred HcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH---HHHHHHHHHHcCCHHHHHHHHHHHHhc-CCChHH
Q 004426 634 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER---LVYEGWILYDTGHREEALSRAEKSISI-ERTFEA 709 (754)
Q Consensus 634 ~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea---~~~~G~~ly~~G~~eeAl~~~e~Ai~l-~~~~~a 709 (754)
+-+|+++++|+|+|.+|..+|++++|+..|++|++++|+++++ ++|+|.+|..+|++++|++.+++||++ +|.|.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~- 147 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFS- 147 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHH-
Confidence 3689999999999999999999999999999999999999976 999999999999999999999999998 44443
Q ss_pred HHHHHHHhhccCCCCC-chhHHHHHHHHHhcC
Q 004426 710 FFLKAYILADTNLDPE-SSTYVIQLLEEALRC 740 (754)
Q Consensus 710 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 740 (754)
++..|..+||= .....-+|+|++-++
T Consensus 148 -----~i~~DpdL~plR~~pef~eLlee~rk~ 174 (453)
T PLN03098 148 -----TILNDPDLAPFRASPEFKELQEEARKG 174 (453)
T ss_pred -----HHHhCcchhhhcccHHHHHHHHHHHHh
Confidence 45677766543 233455666666554
No 121
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=3.6e-08 Score=98.28 Aligned_cols=198 Identities=15% Similarity=0.122 Sum_probs=133.2
Q ss_pred HHHHHHhhhcCCh----hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHH
Q 004426 485 GWMYQERSLYNLG----REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-DCLELRAWLFI 559 (754)
Q Consensus 485 g~ay~~r~~y~~g----~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~-~~~~~ra~~~~ 559 (754)
+.++++||.+... .-|.-||++++.+.|+.+.+++++|.-+...|+++.|.+.|+-.+++||.. -+..|||..+.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 4555555544322 556669999999999999999999999999999999999999999999975 44568999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCC
Q 004426 560 AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK 639 (754)
Q Consensus 560 ~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~ 639 (754)
--||+.-|..|+.+--+-||+++. ..+---+-+..-+..+|. ....+|+-.++-..
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPf-------R~LWLYl~E~k~dP~~A~-----------------tnL~qR~~~~d~e~ 200 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPF-------RSLWLYLNEQKLDPKQAK-----------------TNLKQRAEKSDKEQ 200 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChH-------HHHHHHHHHhhCCHHHHH-----------------HHHHHHHHhccHhh
Confidence 999999999999999999998741 111111111111222221 22444444443222
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CChHHHH
Q 004426 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE-------HERLVYEGWILYDTGHREEALSRAEKSISIE-RTFEAFF 711 (754)
Q Consensus 640 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-------~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~-~~~~a~~ 711 (754)
..|+--+ ..+|... -...++++.+-..++ .|.++++|-.+...|+.++|...|.=||+-+ =+|..++
T Consensus 201 -WG~~iV~---~yLgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~R 275 (297)
T COG4785 201 -WGWNIVE---FYLGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHR 275 (297)
T ss_pred -hhHHHHH---HHHhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHH
Confidence 1122222 2233332 112233333333333 6889999999999999999999999999863 3555443
No 122
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.91 E-value=7.9e-07 Score=93.60 Aligned_cols=204 Identities=15% Similarity=0.088 Sum_probs=150.7
Q ss_pred ccchhHHHHHHHHHHhhhhcchhhHHHHHHHhhhch-hhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhh
Q 004426 377 GHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECS-TERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYS 453 (754)
Q Consensus 377 ~~~~~~~~a~LswV~~d~~~r~~~~v~LLer~vr~~-~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a 453 (754)
.++.|.....|+..--.... .++++.+=+.++..| .+.-|+..|..+||.-|...|-++.|+..|...++.+. ..+
T Consensus 65 d~~t~e~~ltLGnLfRsRGE-vDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~A 143 (389)
T COG2956 65 DPETFEAHLTLGNLFRSRGE-VDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGA 143 (389)
T ss_pred CchhhHHHHHHHHHHHhcch-HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHH
Confidence 34445555556655322222 334555444444433 55667888999999999999999999999988777532 346
Q ss_pred hhhHHHHHHHhCCHHHHHHHHHHHHHccCC-----CHHHHHHhhhcC----ChhhHHHHHHHHHhhCCCChHHHHHHHHH
Q 004426 454 LAGLARAKYKVGQQYSAYKLINSIISEHKP-----TGWMYQERSLYN----LGREKIVDLNYASELDPTLSFPYKYRAVA 524 (754)
Q Consensus 454 ~~~larv~~~~G~~~~A~~~~~~aI~~~~~-----~g~ay~~r~~y~----~g~eAl~dl~kAi~LdP~~~~ay~~rg~~ 524 (754)
...+-.+|....++.+|++...+.....+. .+.-|.+.+.-. ..+.|..-+.+|++-||+.+.+=.-+|.+
T Consensus 144 lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v 223 (389)
T COG2956 144 LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRV 223 (389)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHH
Confidence 666777888888888898888887776653 344454443221 11667888899999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 525 KMEEGQIRAAISEIDRIIVFKLS--VDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 525 l~~lg~~~eAl~~~~rAl~l~p~--~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
.+..|+|+.|+..+.++++.||+ +..+..+..+|.++|+.++.+..++++.+-.|+-
T Consensus 224 ~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 224 ELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 99999999999999999999997 5666777789999999999999999999888863
No 123
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.91 E-value=2.9e-06 Score=91.77 Aligned_cols=275 Identities=15% Similarity=0.123 Sum_probs=157.1
Q ss_pred HHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcC
Q 004426 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN 495 (754)
Q Consensus 418 ka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~ 495 (754)
++...-+-|...+.-|+|..|++...++-+-+. .-++..-+++-..+|+.+.|-..
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~y---------------------- 140 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRY---------------------- 140 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHH----------------------
Confidence 444555668888889999999998887666533 33344445667777777655444
Q ss_pred ChhhHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 496 LGREKIVDLNYASELDPTL-SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLA 573 (754)
Q Consensus 496 ~g~eAl~dl~kAi~LdP~~-~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~ 573 (754)
+.+|.++.++. ...+..|+-++...|+++.|.+..+.+++..|. +..+..+..+|...|+|.+.++-..+
T Consensus 141 --------L~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~ 212 (400)
T COG3071 141 --------LAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPK 212 (400)
T ss_pred --------HHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45555552222 345566777777777777777777777777774 66666666777777777777776665
Q ss_pred HHhcC---C-CccccccchhhhHHHHHHhhhhccccch---hhhhhhhhcccc--------------ccccc-hHHHHHH
Q 004426 574 LLALE---S-NYMMFHGRVSGDHLVKLLNHHVRSWSPA---DCWIKLYDRWSS--------------VDDIG-SLAVINQ 631 (754)
Q Consensus 574 al~l~---P-~~~~~~~~~~~~~~~~~l~~~~~~~~~A---~~~~~l~~~~~~--------------~~d~~-al~~~~~ 631 (754)
.-+-. + .+..+... + -.+.+++....-... ++|.++-.+... .++.. |...+.+
T Consensus 213 L~ka~~l~~~e~~~le~~-a---~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~ 288 (400)
T COG3071 213 LRKAGLLSDEEAARLEQQ-A---WEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIED 288 (400)
T ss_pred HHHccCCChHHHHHHHHH-H---HHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHH
Confidence 55432 1 11100000 0 001111111111111 112111111111 12222 3334444
Q ss_pred HHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 004426 632 MLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFF 711 (754)
Q Consensus 632 aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~ 711 (754)
+|...=. +.++ +=.--.+.++++.=+...++.++..|+++..+.++|-.+++.+.+.+|=..+|.|++.+||-+.+.
T Consensus 289 ~Lk~~~D-~~L~--~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~ 365 (400)
T COG3071 289 ALKRQWD-PRLC--RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYA 365 (400)
T ss_pred HHHhccC-hhHH--HHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHH
Confidence 4433211 1111 111112344444455555566667788888999999999999999999999999999999999888
Q ss_pred HHHHHhhccCCCCCchhHH
Q 004426 712 LKAYILADTNLDPESSTYV 730 (754)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~ 730 (754)
..|++++-.. ||+-+.-|
T Consensus 366 ~la~~~~~~g-~~~~A~~~ 383 (400)
T COG3071 366 ELADALDQLG-EPEEAEQV 383 (400)
T ss_pred HHHHHHHHcC-ChHHHHHH
Confidence 8888887654 45544433
No 124
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.90 E-value=2.3e-08 Score=91.19 Aligned_cols=69 Identities=12% Similarity=0.052 Sum_probs=45.9
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 640 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
+.+++.+|.++.+.|++++|+..+++++...|++ +++++.+|+++..+|++++|+..+++++...|+..
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 3455666666667777777777777776666664 45666677777777777777777777776666654
No 125
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.89 E-value=3.4e-08 Score=89.99 Aligned_cols=109 Identities=14% Similarity=0.100 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhh
Q 004426 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG 590 (754)
Q Consensus 515 ~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~----~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~ 590 (754)
+..++.+|..+.++|++++|+..|++++..+|+ +..++.+|.++...|++++|+..|++++..+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--------- 72 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS--------- 72 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---------
Confidence 467899999999999999999999999999885 3567789999999999999999999999999975
Q ss_pred hHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 591 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS 670 (754)
Q Consensus 591 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~ 670 (754)
|..+.++++.|.++..+|++++|+..++++++..
T Consensus 73 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 ----------------------------------------------PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred ----------------------------------------------CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 2235678888999999999999999999999999
Q ss_pred CCchhHHH
Q 004426 671 SSEHERLV 678 (754)
Q Consensus 671 P~~~ea~~ 678 (754)
|++..+..
T Consensus 107 p~~~~~~~ 114 (119)
T TIGR02795 107 PGSSAAKL 114 (119)
T ss_pred cCChhHHH
Confidence 99887654
No 126
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=2.4e-08 Score=107.22 Aligned_cols=247 Identities=12% Similarity=0.056 Sum_probs=167.6
Q ss_pred hhccchHHHHHHHHHHhhhcc---hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCCh----hhHHH
Q 004426 430 FEREEYKDACYYFEAAADAGH---IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG----REKIV 502 (754)
Q Consensus 430 ~~~g~~~eA~~~f~~AL~~~~---~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g----~eAl~ 502 (754)
+-.|.|..++..++ .....+ ......+.|.+..+|++...+......- .|.+. +......|... +.++.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~-av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQ-AVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCH-HHHHHHHHHCTSTTHHCHHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHH-HHHHHHHHHhCccchHHHHH
Confidence 34577887776555 111211 2345678899999999876655443211 33332 22222222222 45555
Q ss_pred HHHHHHhhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 503 DLNYASELD--PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESN 580 (754)
Q Consensus 503 dl~kAi~Ld--P~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~ 580 (754)
.+...+.-. +.+.....--|.++...|++++|+..+.+. .+.++...+-.+++.++|++.|.+-++..-+.+.|
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD 163 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED 163 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 555443222 234455566778888899999999988765 34677777778999999999999999999999987
Q ss_pred ccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHH
Q 004426 581 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 659 (754)
Q Consensus 581 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeA 659 (754)
.. ..+ .|.+|+.++.-- +.+. |.-+|+..-+..|.++...+.++.+...+|+++||
T Consensus 164 ~~-------l~q-------------La~awv~l~~g~---e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eA 220 (290)
T PF04733_consen 164 SI-------LTQ-------------LAEAWVNLATGG---EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEA 220 (290)
T ss_dssp HH-------HHH-------------HHHHHHHHHHTT---TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHH
T ss_pred HH-------HHH-------------HHHHHHHHHhCc---hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHH
Confidence 52 111 277788887663 3344 68899998888899999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCh
Q 004426 660 MRCLRLARNHSSSEHERLVYEGWILYDTGHREEALS-RAEKSISIERTF 707 (754)
Q Consensus 660 l~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~-~~e~Ai~l~~~~ 707 (754)
.+.+++|++.+|++++++.|+..+-+.+|.-.++.. ...+.-...|+-
T Consensus 221 e~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 221 EELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999955444 445544467764
No 127
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.88 E-value=6.1e-09 Score=85.71 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=60.7
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 644 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
+.+|..+...|++++|++.|+++++.+|+++++++.+|++++.+|++++|+..|++++++.|+.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999864
No 128
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.86 E-value=3.1e-08 Score=114.33 Aligned_cols=124 Identities=15% Similarity=0.084 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHcCCHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEE--------GQIRAAISEIDRIIVF--KL-SVDCLELRAWLFIAADDYES 566 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~l--------g~~~eAl~~~~rAl~l--~p-~~~~~~~ra~~~~~lgd~~~ 566 (754)
..|+..|++|+++||+++.+|-.++.++... ++...|.....+++++ +| ++..+...|..+...|++++
T Consensus 359 ~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~ 438 (517)
T PRK10153 359 NKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDE 438 (517)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHH
Confidence 6788889999999999999999988877554 2345666666776664 44 35666667777777788888
Q ss_pred HHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhH
Q 004426 567 ALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQ 646 (754)
Q Consensus 567 Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~ 646 (754)
|.+.|++|++++|+ +.+|+.+
T Consensus 439 A~~~l~rAl~L~ps-----------------------------------------------------------~~a~~~l 459 (517)
T PRK10153 439 AYQAINKAIDLEMS-----------------------------------------------------------WLNYVLL 459 (517)
T ss_pred HHHHHHHHHHcCCC-----------------------------------------------------------HHHHHHH
Confidence 87777666666663 4578889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHH
Q 004426 647 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYE 680 (754)
Q Consensus 647 g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~ 680 (754)
|.++...|++++|++.|++|++++|.++.-++-.
T Consensus 460 G~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~ 493 (517)
T PRK10153 460 GKVYELKGDNRLAADAYSTAFNLRPGENTLYWIE 493 (517)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 9999999999999999999999999988644433
No 129
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.85 E-value=4.1e-08 Score=90.67 Aligned_cols=84 Identities=19% Similarity=0.207 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---H--HHHHHHHHHHHHcCCHHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS---V--DCLELRAWLFIAADDYESALRDTL 572 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~---~--~~~~~ra~~~~~lgd~~~Al~d~~ 572 (754)
++|++-|.+|+++.|..+.+|+||+.++.-+|+.++|+.++++|+++.-+ . ..+.-||.+|..+|+.+.|.+||+
T Consensus 60 d~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe 139 (175)
T KOG4555|consen 60 DGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFE 139 (175)
T ss_pred HHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHH
Confidence 88999999999999999999999999999999999999999999999653 2 345669999999999999999999
Q ss_pred HHHhcCCCc
Q 004426 573 ALLALESNY 581 (754)
Q Consensus 573 ~al~l~P~~ 581 (754)
.|.+|...+
T Consensus 140 ~AA~LGS~F 148 (175)
T KOG4555|consen 140 AAAQLGSKF 148 (175)
T ss_pred HHHHhCCHH
Confidence 999999887
No 130
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.84 E-value=5.8e-08 Score=96.12 Aligned_cols=72 Identities=13% Similarity=0.168 Sum_probs=63.8
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 004426 511 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (754)
Q Consensus 511 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~----~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~ 582 (754)
+|..+.+|+++|.++...|++++|+..|++++++.|+ ...++++|.++..+|++++|+..|+++++++|++.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP 106 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 3466778999999999999999999999999998775 24678899999999999999999999999999873
No 131
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.83 E-value=1.5e-08 Score=108.72 Aligned_cols=252 Identities=16% Similarity=0.070 Sum_probs=178.9
Q ss_pred hHHHHHHHhhhchhhhHHHHHH-HhhhhhhHhhccchHHHHHHHHHHhhh--------cchhhhhhHHHHHHHhCCHHHH
Q 004426 400 TTVMLLERLGECSTERWQRMLA-LHQLGCVMFEREEYKDACYYFEAAADA--------GHIYSLAGLARAKYKVGQQYSA 470 (754)
Q Consensus 400 ~~v~LLer~vr~~~~~~qka~A-l~~LG~v~~~~g~~~eA~~~f~~AL~~--------~~~~a~~~larv~~~~G~~~~A 470 (754)
..+.+|+.++....+.+....| |.+||++|+-.++|++|.++..-=|.+ +..-+..++|+++-.+|.+++|
T Consensus 35 aGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA 114 (639)
T KOG1130|consen 35 AGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEA 114 (639)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchH
Confidence 4678898888887777766555 889999999999999999875532222 3345677899999999999999
Q ss_pred HHHHHHHHHcc-------------CCCHHHHHHhhhcC----------ChhhHHHHHHHHHhhCCCC-------------
Q 004426 471 YKLINSIISEH-------------KPTGWMYQERSLYN----------LGREKIVDLNYASELDPTL------------- 514 (754)
Q Consensus 471 ~~~~~~aI~~~-------------~~~g~ay~~r~~y~----------~g~eAl~dl~kAi~LdP~~------------- 514 (754)
+-+..+-+... -++|.+|..+|... .++++..+|+.|.++--.+
T Consensus 115 ~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aq 194 (639)
T KOG1130|consen 115 LTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQ 194 (639)
T ss_pred HHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 87765543321 24566666665321 1155666666666553333
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccc
Q 004426 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-------DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 587 (754)
Q Consensus 515 ~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~-------~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~ 587 (754)
-.+|-|+|+.|.-+|+|+.||..-..=|.+.-.. .++.+.|+++.-+|.++.|+..|.+++.|.-.
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie------- 267 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE------- 267 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHH-------
Confidence 3578889999999999999998887777765421 23456678899999999999999887765421
Q ss_pred hhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 004426 588 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (754)
Q Consensus 588 ~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 667 (754)
++++ ..+ +...+.+|+++..+..++.|+...++=+
T Consensus 268 -------------------------lg~r---------------~vE-----AQscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 268 -------------------------LGNR---------------TVE-----AQSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred -------------------------hcch---------------hHH-----HHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 1111 110 2235677888888888888888887766
Q ss_pred hcCC------CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 668 NHSS------SEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 668 ~l~P------~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
.+.- -...+.|.+|..+-.+|..++|+-..++++++
T Consensus 303 aIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 303 AIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5543 34667899999999999999999888888775
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.81 E-value=3.3e-07 Score=110.08 Aligned_cols=253 Identities=11% Similarity=-0.021 Sum_probs=144.9
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhhcch--hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCC
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 496 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~--~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~ 496 (754)
..++..+...+...+++++|+..++.+++..|. ..++.+|.+++..+++..+... .++...+...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~----------- 97 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL----------- 97 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc-----------
Confidence 456777788888888888888888888887543 4566677778877776554333 3333332111
Q ss_pred hhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALL 575 (754)
Q Consensus 497 g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al 575 (754)
..++.+++.+.+-..|.+-+|++.+|.+|..+|+.++|.+.|+++|+++|+ +.++++.|..|... ++++|+..+.+|+
T Consensus 98 ~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 98 KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 023445555555556777777777777777777777777777777777774 66677777776666 7777777777777
Q ss_pred hcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCC---ChhHHHhHHHHHHH
Q 004426 576 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG---KSFLRFRQSLLLLR 652 (754)
Q Consensus 576 ~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~---~~~~~~~~g~~L~~ 652 (754)
+..=+.. . .-..-+.|..+.+. ..+|+.-+..+.+.+.-.-+ -++++.-.=..+-.
T Consensus 177 ~~~i~~k------q-------------~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~ 235 (906)
T PRK14720 177 YRFIKKK------Q-------------YVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA 235 (906)
T ss_pred HHHHhhh------c-------------chHHHHHHHHHHhc--CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhh
Confidence 6522210 0 00001112222222 22333323333333332222 22223333334444
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHhcCCC
Q 004426 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT--------------------GHREEALSRAEKSISIERT 706 (754)
Q Consensus 653 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~--------------------G~~eeAl~~~e~Ai~l~~~ 706 (754)
++++.+++..++.+++++|+|..|...+..++-.. ..+..|+..||+=|..++.
T Consensus 236 ~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G 309 (906)
T PRK14720 236 LEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTG 309 (906)
T ss_pred hhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCC
Confidence 55555556666666666666555555555554322 3467788888887777664
No 133
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.81 E-value=1.3e-06 Score=84.70 Aligned_cols=196 Identities=20% Similarity=0.199 Sum_probs=149.4
Q ss_pred hhHHHHHHHHHh--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH-HHHHHHHH-HHHHcCCHHHHHHHHHH
Q 004426 498 REKIVDLNYASE--LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-DCLELRAW-LFIAADDYESALRDTLA 573 (754)
Q Consensus 498 ~eAl~dl~kAi~--LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~-~~~~~ra~-~~~~lgd~~~Al~d~~~ 573 (754)
..+...+..+.. ..+.....+...|..+...+++.+|+..+.+++..++.. ......+. ++...|+++.|+..|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 155 (291)
T COG0457 76 EEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK 155 (291)
T ss_pred HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555666665 778888888888888888888999999999999887754 33344445 78899999999999999
Q ss_pred HHhcCCC-ccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCC-ChhHHHhHHHHH
Q 004426 574 LLALESN-YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPG-KSFLRFRQSLLL 650 (754)
Q Consensus 574 al~l~P~-~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~-~~~~~~~~g~~L 650 (754)
++..+|. . .............. ...+.. ++..+.+++...|. ....+.+.+..+
T Consensus 156 ~~~~~~~~~----~~~~~~~~~~~~~~-------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 156 ALELDPELN----ELAEALLALGALLE-------------------ALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHhcCCCcc----chHHHHHHhhhHHH-------------------HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 9887774 1 01111111111111 112222 57788999999999 799999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhc
Q 004426 651 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILAD 719 (754)
Q Consensus 651 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~ 719 (754)
...+..++|+..+..++...|+........+..+...|.++++...+++++...|. ++..+..+.+
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 278 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD---LYNLGLALLL 278 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc---hhhhhHHHHH
Confidence 99999999999999999999998889999999999888899999999999999998 4444444443
No 134
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.80 E-value=1.4e-08 Score=107.55 Aligned_cols=142 Identities=18% Similarity=0.170 Sum_probs=117.5
Q ss_pred EEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCc-c-eEEecCCCCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHH
Q 004426 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKR-K-TIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSF 297 (754)
Q Consensus 220 V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~-~-~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~vlelL~a 297 (754)
|++.+++ +.|||+.++ .|.+||+.||.|+|.|++. . ...++.+..+..+.+.+++|+|+++.+ |.++-+.+++-+
T Consensus 295 iql~~~~-RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~td-i~~~~A~dvll~ 371 (516)
T KOG0511|consen 295 IQLPEED-RYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTD-IIFDVASDVLLF 371 (516)
T ss_pred ccccccc-cccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhccccc-chHHHHhhHHHH
Confidence 4554444 599999999 7889999999999999653 2 233344778889999999999999999 999999999999
Q ss_pred hchhChh--h-HHHHHHHHHHhh---cCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCchhhhhhcc
Q 004426 298 ANRFCCE--E-MKSACDAHLASL---VGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFC 365 (754)
Q Consensus 298 A~~f~l~--~-Lk~~Ce~~L~~~---i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~e~f~~Ll~ 365 (754)
|+++-+. + |+.+....+.+. ++ .-|+..|+.++....+..|..++..|+..|+...+.+|++.+.+.
T Consensus 372 ad~lal~~dr~Lkt~as~~itq~~e~id-~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~ 444 (516)
T KOG0511|consen 372 ADKLALADDRLLKTAASAEITQWLELID-MYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLR 444 (516)
T ss_pred hhHhhhhhhhhhhhhhhHHHHHHHHHHH-hhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 9999775 2 666665555543 44 567999999999999999999999999999999999999987753
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=8.1e-07 Score=90.88 Aligned_cols=186 Identities=17% Similarity=0.122 Sum_probs=148.6
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccc
Q 004426 509 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 587 (754)
Q Consensus 509 ~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~ 587 (754)
.+.|+....|-....+.+.-|+.+-|..++++.-.--|+ +...-.-|..+...|.|++|+..|+..++-||.+-..+-|
T Consensus 46 ~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KR 125 (289)
T KOG3060|consen 46 ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKR 125 (289)
T ss_pred ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHH
Confidence 466777777788888999999999999999996655584 7777778899999999999999999999999987332222
Q ss_pred hhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 004426 588 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (754)
Q Consensus 588 ~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 667 (754)
.-| +..... ....++.-++.=|+.-|++.++|.-+++++.-+|.++.|.=+|+..+
T Consensus 126 KlA------ilka~G------------------K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 126 KLA------ILKAQG------------------KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHH------HHHHcC------------------CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 111 111111 11124667888899999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCC-ChHHH---HHHHHHhh
Q 004426 668 NHSSSEHERLVYEGWILYDTGH---REEALSRAEKSISIER-TFEAF---FLKAYILA 718 (754)
Q Consensus 668 ~l~P~~~ea~~~~G~~ly~~G~---~eeAl~~~e~Ai~l~~-~~~a~---~~~~~~~~ 718 (754)
=++|.++--+--+|-++|.+|- ++-|...|+||+++.| ++-+. ++.|-+++
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999985 5678899999999999 66554 47777777
No 136
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.78 E-value=1.4e-07 Score=92.85 Aligned_cols=84 Identities=12% Similarity=0.041 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTL--SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDT 571 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~--~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~----~~~~~~ra~~~~~lgd~~~Al~d~ 571 (754)
..+...+.+.++.++.. +..|++.|.++..+|++++|+..|++|+.+.|+ +..+.+.|.++..+|++++|+..|
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444455555666666 677799999999999999999999999999775 246788999999999999999999
Q ss_pred HHHHhcCCCc
Q 004426 572 LALLALESNY 581 (754)
Q Consensus 572 ~~al~l~P~~ 581 (754)
+++++++|.+
T Consensus 96 ~~Al~~~~~~ 105 (168)
T CHL00033 96 FQALERNPFL 105 (168)
T ss_pred HHHHHhCcCc
Confidence 9999999987
No 137
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.76 E-value=1e-05 Score=91.69 Aligned_cols=190 Identities=16% Similarity=0.035 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL 577 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l 577 (754)
..|...+..|++.+|++-+.|..---+..+..+++.|-.-|.+|-...|....|+--+.+...++..++|++.++.+++.
T Consensus 601 ~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 601 PAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 44555555555555555555555444555555555555555555555555555554445555555555555555555555
Q ss_pred CCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCH
Q 004426 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 656 (754)
Q Consensus 578 ~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~ 656 (754)
-|+|. .-|+.+++...+...++ |-..|.+.+...|+++-+|..++.+-.+.|.+
T Consensus 681 fp~f~-------------------------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~ 735 (913)
T KOG0495|consen 681 FPDFH-------------------------KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL 735 (913)
T ss_pred CCchH-------------------------HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch
Confidence 55551 12333333333333333 35566777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 004426 657 KAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFL 712 (754)
Q Consensus 657 eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~ 712 (754)
-.|..++++++-.||+++.-+.-.=-.-+..|..++|-..-.||+.-=|+..--.-
T Consensus 736 ~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWa 791 (913)
T KOG0495|consen 736 VRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWA 791 (913)
T ss_pred hhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHH
Confidence 77777777777777776655544444555667777777666676666666543333
No 138
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.1e-07 Score=103.31 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=88.2
Q ss_pred HHhhhhhhHhhccchHHHHHHHHHHhhh-cchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhh
Q 004426 421 ALHQLGCVMFEREEYKDACYYFEAAADA-GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGRE 499 (754)
Q Consensus 421 Al~~LG~v~~~~g~~~eA~~~f~~AL~~-~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~e 499 (754)
-....|+.++..|+|..|...|++|+.. ++. .+... ++
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~------------~~~~~-----------------------------ee 248 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYR------------RSFDE-----------------------------EE 248 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhcc------------ccCCH-----------------------------HH
Confidence 3456788899999999898888887774 111 00000 00
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 500 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALE 578 (754)
Q Consensus 500 Al~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~ 578 (754)
. .-..++. ...|.|++.++..+++|.+|+...+++|+++|+ ..++|.||.++..+|+|+.|+.||++|++++
T Consensus 249 ~--~~~~~~k-----~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 249 Q--KKAEALK-----LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred H--HHHHHHH-----HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 0 0011222 357899999999999999999999999999995 7999999999999999999999999999999
Q ss_pred CCc
Q 004426 579 SNY 581 (754)
Q Consensus 579 P~~ 581 (754)
|+|
T Consensus 322 P~N 324 (397)
T KOG0543|consen 322 PSN 324 (397)
T ss_pred CCc
Confidence 997
No 139
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.72 E-value=1e-05 Score=78.33 Aligned_cols=237 Identities=23% Similarity=0.163 Sum_probs=163.4
Q ss_pred cchHHHHHHHHHHhhhcc----hhhhhhHHHHHHHhCCHHHHHHHHHHHHH--ccCCCHHHHHHhhhcC----ChhhHHH
Q 004426 433 EEYKDACYYFEAAADAGH----IYSLAGLARAKYKVGQQYSAYKLINSIIS--EHKPTGWMYQERSLYN----LGREKIV 502 (754)
Q Consensus 433 g~~~eA~~~f~~AL~~~~----~~a~~~larv~~~~G~~~~A~~~~~~aI~--~~~~~g~ay~~r~~y~----~g~eAl~ 502 (754)
+.+..+...+..++.... .......+..+...|....+...+...+. ..+..+..+...+.+. ...+++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 344444455554444432 13344455566667777777777777665 4555555555544321 1267888
Q ss_pred HHHHHHhhCCCChHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCC---C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 503 DLNYASELDPTLSFPYKYRAV-AKMEEGQIRAAISEIDRIIVFKL---S-VDCLELRAWLFIAADDYESALRDTLALLAL 577 (754)
Q Consensus 503 dl~kAi~LdP~~~~ay~~rg~-~l~~lg~~~eAl~~~~rAl~l~p---~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l 577 (754)
.+.+++..++.........+. ++...|++++|+..|.+++.+.| . ...+..++..+...+++++|+..+.+++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 889999988888777777777 89999999999999999988777 2 344455666688899999999999999999
Q ss_pred CCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCH
Q 004426 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 656 (754)
Q Consensus 578 ~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~ 656 (754)
.|+. ...+....+...... .++. +...+.+++...|.....+...+..+...+..
T Consensus 197 ~~~~-----~~~~~~~~~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (291)
T COG0457 197 NPDD-----DAEALLNLGLLYLKL-------------------GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRY 252 (291)
T ss_pred Cccc-----chHHHHHhhHHHHHc-------------------ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCH
Confidence 9983 011112111111111 1222 57789999999999888888899888888889
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 657 KAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 699 (754)
Q Consensus 657 eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~ 699 (754)
++|...++++++.+|. +...|+.+... ..++...+.+
T Consensus 253 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~ 289 (291)
T COG0457 253 EEALEALEKALELDPD----LYNLGLALLLL--LAEALELLEK 289 (291)
T ss_pred HHHHHHHHHHHHhCcc----hhhhhHHHHHH--HHHHHHHHhh
Confidence 9999999999999999 66777777666 5555554443
No 140
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.72 E-value=2.7e-06 Score=105.33 Aligned_cols=260 Identities=13% Similarity=0.009 Sum_probs=172.2
Q ss_pred hhhhhHhhccchHHHHHHHHHHhhhcc-hhhhhhHHHHHHHhCCHHHHHHHHHHH----HHccCCC----HHHHHHhhhc
Q 004426 424 QLGCVMFEREEYKDACYYFEAAADAGH-IYSLAGLARAKYKVGQQYSAYKLINSI----ISEHKPT----GWMYQERSLY 494 (754)
Q Consensus 424 ~LG~v~~~~g~~~eA~~~f~~AL~~~~-~~a~~~larv~~~~G~~~~A~~~~~~a----I~~~~~~----g~ay~~r~~y 494 (754)
..+..+...|++.+|..+...+-.... .......+......|+.......+..+ ...++.. ++.+...+
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g-- 423 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH-- 423 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC--
Confidence 345567778888888776554322211 112233455566677776655555443 1222332 33333333
Q ss_pred CChhhHHHHHHHHHhhCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--H----HHHHHHHHHHH
Q 004426 495 NLGREKIVDLNYASELDPT---------LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS--V----DCLELRAWLFI 559 (754)
Q Consensus 495 ~~g~eAl~dl~kAi~LdP~---------~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~--~----~~~~~ra~~~~ 559 (754)
..+++...+..+.+.-+. .......+|.++...|++++|...++++++..|. . ..+...+.++.
T Consensus 424 -~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 424 -RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred -CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 337777777777654322 2345566888999999999999999999986553 2 12355778899
Q ss_pred HcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcC---
Q 004426 560 AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND--- 636 (754)
Q Consensus 560 ~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~--- 636 (754)
..|++++|+..+++++++....-.......+...++.+.....+++.| ...+++++++.
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A------------------~~~~~~al~~~~~~ 564 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAA------------------YETQEKAFQLIEEQ 564 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHHHHHh
Confidence 999999999999999987664422222233344444444444455555 55566666642
Q ss_pred -----CCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC-----chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 637 -----PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS-----EHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (754)
Q Consensus 637 -----P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~-----~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~ 704 (754)
|.....+..+|.++...|++++|.+.+++++.+... ...++.++|.+....|++++|...++++..+.
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL 642 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 223345678899999999999999999999886432 46677789999999999999999999998863
No 141
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.71 E-value=1.1e-08 Score=107.62 Aligned_cols=165 Identities=13% Similarity=0.044 Sum_probs=109.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchh-hhHHHH
Q 004426 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS-GDHLVK 595 (754)
Q Consensus 518 y~~rg~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~-~~~~~~ 595 (754)
...+|+-|..+|+|+|||.+|.++|.++| ++-.+.+|+.+|+++++|..|..|+..|+.||-.|..+|.|.+ |...++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999 5777789999999999999999999999999999966444433 444443
Q ss_pred HHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHH----------------------------
Q 004426 596 LLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQS---------------------------- 647 (754)
Q Consensus 596 ~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g---------------------------- 647 (754)
...+| -.+++++|++.|++.++.-..+
T Consensus 180 -------~~~EA------------------KkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~ 234 (536)
T KOG4648|consen 180 -------NNMEA------------------KKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQI 234 (536)
T ss_pred -------hHHHH------------------HHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhh
Confidence 33444 3456777777777666543221
Q ss_pred -------HHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 648 -------LLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 648 -------~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
..+.+-|.++-|+.+|.+-+.-.-+++..-.+ ...+.+.-.+++|+..-.+++-++|++-
T Consensus 235 l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~ 301 (536)
T KOG4648|consen 235 LPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPM 301 (536)
T ss_pred ccccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcC
Confidence 12222333333333333333333333333333 4444555566666666666776666654
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.70 E-value=7.7e-08 Score=81.18 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=77.0
Q ss_pred hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (754)
Q Consensus 625 al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~ 704 (754)
|+..+++++...|.+..+++.+|.++...|++++|+..++++++..|.+.++++..|.++...|++++|...+++++.+.
T Consensus 19 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 19 ALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 004426 705 RT 706 (754)
Q Consensus 705 ~~ 706 (754)
|+
T Consensus 99 ~~ 100 (100)
T cd00189 99 PN 100 (100)
T ss_pred CC
Confidence 74
No 143
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=7.1e-07 Score=98.68 Aligned_cols=145 Identities=19% Similarity=0.174 Sum_probs=109.7
Q ss_pred HHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccc
Q 004426 506 YASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMF 584 (754)
Q Consensus 506 kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~ 584 (754)
.+...+|.-..+++.++..++..|++++|+..++..|+-.|+ +..+..++.++.+.++.++|+.-+++++.++|+
T Consensus 297 ~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~---- 372 (484)
T COG4783 297 LAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN---- 372 (484)
T ss_pred HHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----
Confidence 344444777777777777777777777777777777777775 555566777777777777777766666666664
Q ss_pred ccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHH
Q 004426 585 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLR 664 (754)
Q Consensus 585 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~ 664 (754)
.+.++.++|.+|.++|++++|++.++
T Consensus 373 ------------------------------------------------------~~~l~~~~a~all~~g~~~eai~~L~ 398 (484)
T COG4783 373 ------------------------------------------------------SPLLQLNLAQALLKGGKPQEAIRILN 398 (484)
T ss_pred ------------------------------------------------------ccHHHHHHHHHHHhcCChHHHHHHHH
Confidence 45667788888888888888888888
Q ss_pred HHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 665 LARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 665 ~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
+.+.-+|++++-+.+++..+-.+|+..+|...+-+...+.=..+
T Consensus 399 ~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~ 442 (484)
T COG4783 399 RYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLE 442 (484)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHH
Confidence 88888888888888888888888888888888777777765555
No 144
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.67 E-value=5.8e-08 Score=107.46 Aligned_cols=73 Identities=10% Similarity=0.084 Sum_probs=67.4
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HH---HHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCc
Q 004426 509 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VD---CLELRAWLFIAADDYESALRDTLALLAL-ESNY 581 (754)
Q Consensus 509 ~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~---~~~~ra~~~~~lgd~~~Al~d~~~al~l-~P~~ 581 (754)
+-+|+++.+|+|+|.+|..+|+|++|++.|++||+++|+ .+ +|+++|.+|..+|++++|+.+|++|+++ +|.|
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f 146 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF 146 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence 468999999999999999999999999999999999997 43 4899999999999999999999999998 5544
No 145
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.66 E-value=9.9e-08 Score=102.55 Aligned_cols=249 Identities=12% Similarity=0.029 Sum_probs=166.2
Q ss_pred hhhhhHhhccchHHHHHHHHHHhhhcchh------hhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCCh
Q 004426 424 QLGCVMFEREEYKDACYYFEAAADAGHIY------SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (754)
Q Consensus 424 ~LG~v~~~~g~~~eA~~~f~~AL~~~~~~------a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g 497 (754)
+-|.-.+..|++...+..|++|++.+-.+ .+..+|++|+.+++|.+|.+.-.--+.+ .|
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltl---------ar------ 86 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTL---------AR------ 86 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHH---------HH------
Confidence 34666777889999999999999985432 2344566666666665554432211111 11
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHcCCH------
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-------SVDCLELRAWLFIAADDY------ 564 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p-------~~~~~~~ra~~~~~lgd~------ 564 (754)
.+.-.-.-+.+--|+|+++.-+|+|++|+.+..|-|.+.- ...++|+.|.+|.+.|+-
T Consensus 87 ---------~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p 157 (639)
T KOG1130|consen 87 ---------LLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP 157 (639)
T ss_pred ---------HhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh
Confidence 1111111233446889999999999999988877776532 246678888888877753
Q ss_pred -------HHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcC
Q 004426 565 -------ESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLIND 636 (754)
Q Consensus 565 -------~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~ 636 (754)
+++..+++.|.+.- ...+.+....-.+..+-.|+.+++....-++|++ |+..-.+-|++.
T Consensus 158 ee~g~f~~ev~~al~~Av~fy------------~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia 225 (639)
T KOG1130|consen 158 EEKGAFNAEVTSALENAVKFY------------MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIA 225 (639)
T ss_pred hhcccccHHHHHHHHHHHHHH------------HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHH
Confidence 45556666665432 2234444455555666677788888888888887 444333334443
Q ss_pred CC------ChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcC----CCchh--HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 637 PG------KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS----SSEHE--RLVYEGWILYDTGHREEALSRAEKSISIE 704 (754)
Q Consensus 637 P~------~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~----P~~~e--a~~~~G~~ly~~G~~eeAl~~~e~Ai~l~ 704 (754)
-. --.++-|+|+++..+|.++-|++.|.+++.+. -...| .-|.+|..|+-+..+++|+..+.|=++|.
T Consensus 226 ~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 226 QEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23678999999999999999999998876554 33344 45899999999999999999999988886
Q ss_pred CChH
Q 004426 705 RTFE 708 (754)
Q Consensus 705 ~~~~ 708 (754)
.+.+
T Consensus 306 qeL~ 309 (639)
T KOG1130|consen 306 QELE 309 (639)
T ss_pred HHHH
Confidence 5543
No 146
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=2.3e-06 Score=96.14 Aligned_cols=217 Identities=18% Similarity=0.084 Sum_probs=141.4
Q ss_pred HHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhhCCC-ChH--HHHHHHHHHHHcCCHHHHHHHH
Q 004426 462 YKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPT-LSF--PYKYRAVAKMEEGQIRAAISEI 538 (754)
Q Consensus 462 ~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~-~~~--ay~~rg~~l~~lg~~~eAl~~~ 538 (754)
...|++++|....++++...|+...+..-.-+..+..+..+++-+.|+.++. ... ..+.+|.+..++++.++|+.++
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHH
Confidence 3445555566666666655555444432221111112222222244555553 111 1168899999999999999999
Q ss_pred HHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhcc
Q 004426 539 DRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRW 617 (754)
Q Consensus 539 ~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~ 617 (754)
+ .+++. ....++|+.+++.+|+|++|+.-|+..++-+-+......+.+.......
T Consensus 103 ~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--------------------- 158 (652)
T KOG2376|consen 103 K---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--------------------- 158 (652)
T ss_pred h---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh---------------------
Confidence 9 56775 5578999999999999999999999998877655322212111111000
Q ss_pred ccccccchHHH-HHHHHHcCCC-ChhHHHhHHHHHHHcCCHHHHHHHHHHHHhc-------CCCc--------hhHHHHH
Q 004426 618 SSVDDIGSLAV-INQMLINDPG-KSFLRFRQSLLLLRLNCQKAAMRCLRLARNH-------SSSE--------HERLVYE 680 (754)
Q Consensus 618 ~~~~d~~al~~-~~~aL~l~P~-~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l-------~P~~--------~ea~~~~ 680 (754)
+.+ ..+..-.-|. +=+.+||.|-.+.-.|.+.+|++.+++|+++ .-.+ .-..+.+
T Consensus 159 --------l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl 230 (652)
T KOG2376|consen 159 --------LQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL 230 (652)
T ss_pred --------hhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence 000 1222222333 4468999999999999999999999999432 1111 2356789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 004426 681 GWILYDTGHREEALSRAEKSISIERTFEAF 710 (754)
Q Consensus 681 G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~ 710 (754)
+.+|..+|+-+||.+.|..-|+.+|-.+.+
T Consensus 231 ayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~ 260 (652)
T KOG2376|consen 231 AYVLQLQGQTAEASSIYVDIIKRNPADEPS 260 (652)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhcCCCchH
Confidence 999999999999999999999998887754
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.65 E-value=9.7e-08 Score=78.48 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 519 KYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 519 ~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
+.+|.++++.|++++|+..|+++++.+|+ +..++.+|.++..+|++++|+..|+++++++|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 46899999999999999999999999996 7889999999999999999999999999999986
No 148
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.9e-07 Score=98.98 Aligned_cols=130 Identities=17% Similarity=0.124 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL----------------SVDCLELRAWLFIAADDYESALRDTLALLALES 579 (754)
Q Consensus 516 ~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p----------------~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P 579 (754)
.-..-+|+.|.+.|+|..|+..|.||+.+=. ...++.|.+.+++++++|.+|+..++++|+++|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 3457799999999999999999999887622 012345566667777777766665555555554
Q ss_pred CccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHH
Q 004426 580 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 659 (754)
Q Consensus 580 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeA 659 (754)
+|+-+.|++|.+++.+|.++.|
T Consensus 289 ----------------------------------------------------------~N~KALyRrG~A~l~~~e~~~A 310 (397)
T KOG0543|consen 289 ----------------------------------------------------------NNVKALYRRGQALLALGEYDLA 310 (397)
T ss_pred ----------------------------------------------------------CchhHHHHHHHHHHhhccHHHH
Confidence 5567899999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 004426 660 MRCLRLARNHSSSEHERLVYEGWILYDTGHREEA-LSRAEKSISI 703 (754)
Q Consensus 660 l~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeA-l~~~e~Ai~l 703 (754)
+.+|++|++++|+|.++..-+.-+--+..++.+. -..|.+.++.
T Consensus 311 ~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 311 RDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999988887776666555544 4445555543
No 149
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=1.8e-07 Score=92.42 Aligned_cols=63 Identities=22% Similarity=0.197 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-H-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 519 KYRAVAKMEEGQIRAAISEIDRIIVFKLS-V-----DCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 519 ~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~-----~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
..-|+=+...|.|++|...|..||++-|. + .+|.+||.++++++.++.|+.++.+||+|+|.|
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty 167 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY 167 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh
Confidence 33455555556666666666666655553 1 234455666666666666666666666666654
No 150
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=1.8e-07 Score=92.28 Aligned_cols=99 Identities=24% Similarity=0.289 Sum_probs=79.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004426 458 ARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISE 537 (754)
Q Consensus 458 arv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~ 537 (754)
|+-++..|++.+|..-|..|++..|.... -.| +-.|.|||.+++.+++.+.||.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~r-----------------------sIly~Nraaa~iKl~k~e~aI~d 156 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTST--EER-----------------------SILYSNRAAALIKLRKWESAIED 156 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccH--HHH-----------------------HHHHhhhHHHHHHhhhHHHHHHH
Confidence 44566777776666666666666654322 111 23689999999999999999999
Q ss_pred HHHHHHcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 538 IDRIIVFKLSV-DCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 538 ~~rAl~l~p~~-~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
..+||+|+|.+ .++..|+.+|.++..|++|+.||.++++++|..
T Consensus 157 csKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 157 CSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 99999999974 666778999999999999999999999999975
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=4.2e-06 Score=85.76 Aligned_cols=128 Identities=16% Similarity=0.092 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
++|++.|+..++-||++..+|...-.++..+|+.-+||..++.-+..=| |.++|...+.+|...|+|+.|.=+|+..+-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 7888888889999999999999988899999999999999999998877 589999999999999999999999999999
Q ss_pred cCCCccccccchh-hhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHH
Q 004426 577 LESNYMMFHGRVS-GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQS 647 (754)
Q Consensus 577 l~P~~~~~~~~~~-~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g 647 (754)
++|-+.++++|-+ ..+-.+. ++..+. |...|.|+|.++|.+.+++|..-
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg----~eN~~~------------------arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGG----AENLEL------------------ARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhh----HHHHHH------------------HHHHHHHHHHhChHhHHHHHHHH
Confidence 9998877777765 2222211 111111 46689999999998888876543
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.61 E-value=3.8e-07 Score=76.87 Aligned_cols=83 Identities=22% Similarity=0.244 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
.+|+..+.++++.+|++..++..+|.++...|++++|+..|++++.+.|. ...+...+.++...|++++|...++++++
T Consensus 17 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 17 DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 77788888899999999899999999999999999999999999999996 66778899999999999999999999999
Q ss_pred cCCC
Q 004426 577 LESN 580 (754)
Q Consensus 577 l~P~ 580 (754)
++|+
T Consensus 97 ~~~~ 100 (100)
T cd00189 97 LDPN 100 (100)
T ss_pred cCCC
Confidence 9884
No 153
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.60 E-value=9.5e-06 Score=93.53 Aligned_cols=259 Identities=16% Similarity=0.118 Sum_probs=153.3
Q ss_pred hhhhHhhccchHHHHHHHHHHhhh--cchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcC----C--
Q 004426 425 LGCVMFEREEYKDACYYFEAAADA--GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN----L-- 496 (754)
Q Consensus 425 LG~v~~~~g~~~eA~~~f~~AL~~--~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~----~-- 496 (754)
...++.+.|++++|++.++..-.. +.....-..|.++..+|++++|...|...|..+|++..-|....... .
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 345667788888888887653332 33344555778888888888888888888888887655554332111 0
Q ss_pred ---hhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCH---HHHHHH
Q 004426 497 ---GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDY---ESALRD 570 (754)
Q Consensus 497 ---g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~---~~Al~d 570 (754)
...-...|+...+..|....+ ..+...+..-..+.+.+..|=+-.--+--|..+.+.--+|....+. .+-+..
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 123344566666666653322 2222223222344444444433321121133333333333322221 122222
Q ss_pred HHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhh-----hhhhhccccccccchHHHHHHHHHcCCCChhHHHh
Q 004426 571 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCW-----IKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFR 645 (754)
Q Consensus 571 ~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~-----~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~ 645 (754)
|...++-++.+... . ........+-.| .|.|+....++ .|+..+++||+..|..+++|..
T Consensus 169 ~~~~l~~~~~~~~~--~-----------~~~~~~p~~~lw~~~~lAqhyd~~g~~~--~Al~~Id~aI~htPt~~ely~~ 233 (517)
T PF12569_consen 169 YVNSLESNGSFSNG--D-----------DEEKEPPSTLLWTLYFLAQHYDYLGDYE--KALEYIDKAIEHTPTLVELYMT 233 (517)
T ss_pred HHHhhcccCCCCCc--c-----------ccccCCchHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHhcCCCcHHHHHH
Confidence 33333222211000 0 000111112223 34455533333 3799999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 646 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 699 (754)
Q Consensus 646 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~ 699 (754)
+|.+|-..|++++|.+.++.|..+++.|-..-...+-.++..|++++|......
T Consensus 234 KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 999999999999999999999999999988888888899999999999866543
No 154
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.54 E-value=1.4e-06 Score=92.36 Aligned_cols=108 Identities=8% Similarity=-0.041 Sum_probs=80.5
Q ss_pred ChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccch
Q 004426 514 LSFPYKYRAVAK-MEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 588 (754)
Q Consensus 514 ~~~ay~~rg~~l-~~lg~~~eAl~~~~rAl~l~p~----~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~ 588 (754)
....++..|..+ ++.|+|++|+..|++.++..|+ +.+++.+|.+|...|++++|+..|+++++..|++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s------- 213 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS------- 213 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------
Confidence 345666666665 5567888888888888888884 3567778888888888888888888888888864
Q ss_pred hhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (754)
Q Consensus 589 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 668 (754)
|..+++++.+|.++..+|+.++|...|+++++
T Consensus 214 ------------------------------------------------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 214 ------------------------------------------------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred ------------------------------------------------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567777777777778888888888888888
Q ss_pred cCCCchhH
Q 004426 669 HSSSEHER 676 (754)
Q Consensus 669 l~P~~~ea 676 (754)
..|++..+
T Consensus 246 ~yP~s~~a 253 (263)
T PRK10803 246 KYPGTDGA 253 (263)
T ss_pred HCcCCHHH
Confidence 77777654
No 155
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=4.2e-06 Score=92.68 Aligned_cols=140 Identities=11% Similarity=0.017 Sum_probs=106.7
Q ss_pred ChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 496 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLAL 574 (754)
Q Consensus 496 ~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~a 574 (754)
..++|...++..+..-|+|+..+-.++.++++.|+.++|++-+++++.++|+ +-...++|.++.+.|++++|++.+++.
T Consensus 321 ~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~ 400 (484)
T COG4783 321 QYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRY 400 (484)
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3389999999999999999999999999999999999999999999999997 666788999999999999999988888
Q ss_pred HhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcC
Q 004426 575 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN 654 (754)
Q Consensus 575 l~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg 654 (754)
+.-+|++ ++-|- .+-|+-+..-+.+.++-.+++.+...|
T Consensus 401 ~~~~p~d-------------------------p~~w~----------------~LAqay~~~g~~~~a~~A~AE~~~~~G 439 (484)
T COG4783 401 LFNDPED-------------------------PNGWD----------------LLAQAYAELGNRAEALLARAEGYALAG 439 (484)
T ss_pred hhcCCCC-------------------------chHHH----------------HHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence 8888876 21111 122333333444555556666666666
Q ss_pred CHHHHHHHHHHHHhcC-CCchhH
Q 004426 655 CQKAAMRCLRLARNHS-SSEHER 676 (754)
Q Consensus 655 ~~eeAl~~~~~Al~l~-P~~~ea 676 (754)
++++|+..+.+|.+.. ++..+.
T Consensus 440 ~~~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 440 RLEQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred CHHHHHHHHHHHHHhccCCcHHH
Confidence 6666666666666555 444433
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.52 E-value=1.5e-07 Score=81.70 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=69.9
Q ss_pred hHHHHHHHHHcCCC--ChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 625 SLAVINQMLINDPG--KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 700 (754)
Q Consensus 625 al~~~~~aL~l~P~--~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~A 700 (754)
|+..++++++.+|. +...++++|.++.++|++++|+..+++ ...+|.+.+.++..|.+++.+|+++||+..+++|
T Consensus 8 Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 8 AIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 58899999999995 577889999999999999999999999 9999999999999999999999999999999986
No 157
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.50 E-value=5.4e-06 Score=86.95 Aligned_cols=159 Identities=16% Similarity=0.095 Sum_probs=113.3
Q ss_pred hhHHHHHHHHHhhCCCChHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCC-------
Q 004426 498 REKIVDLNYASELDPTLSFPY---KYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADD------- 563 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay---~~rg~~l~~lg~~~eAl~~~~rAl~l~p~----~~~~~~ra~~~~~lgd------- 563 (754)
++|+..|++++...|....+. +.+|.++.+++++++|+..+++.+++.|+ +.+++.+|.++..+++
T Consensus 49 ~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~ 128 (243)
T PRK10866 49 KQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFF 128 (243)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhcc
Confidence 444444555555555554443 78999999999999999999999999994 3567788887655541
Q ss_pred -----------HHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHH
Q 004426 564 -----------YESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQM 632 (754)
Q Consensus 564 -----------~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~a 632 (754)
..+|+..|++.++.-|+... +.. |. . -+..++..
T Consensus 129 ~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y------a~~--------------A~------~---------rl~~l~~~ 173 (243)
T PRK10866 129 GVDRSDRDPQHARAAFRDFSKLVRGYPNSQY------TTD--------------AT------K---------RLVFLKDR 173 (243)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHHCcCChh------HHH--------------HH------H---------HHHHHHHH
Confidence 35788999999999998621 111 10 0 01122222
Q ss_pred HHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHcCCHHHHHHHH
Q 004426 633 LINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS---EHERLVYEGWILYDTGHREEALSRA 697 (754)
Q Consensus 633 L~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~~~G~~ly~~G~~eeAl~~~ 697 (754)
|+ .--+..|..+.+.|.+.+|+.-++..++.-|+ ..+|++.++.++..+|.-++|-+..
T Consensus 174 la------~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 174 LA------KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HH------HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 22 22335677788899999999999999999887 4789999999999999999997543
No 158
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.9e-06 Score=90.82 Aligned_cols=124 Identities=13% Similarity=0.029 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
++-+.-++.-+.-||++++-|.-+|-+|+.+|++..|...|.+|+++.|+ ++.+-..+-++....
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a-------------- 204 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA-------------- 204 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--------------
Confidence 44555677777777777777777777777777777777777777777774 554433332211110
Q ss_pred cCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCH
Q 004426 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 656 (754)
Q Consensus 577 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~ 656 (754)
++. +..++-..++++|.+||.++.+.+.+|..+...|++
T Consensus 205 -~~~----------------------------------------~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~ 243 (287)
T COG4235 205 -GQQ----------------------------------------MTAKARALLRQALALDPANIRALSLLAFAAFEQGDY 243 (287)
T ss_pred -CCc----------------------------------------ccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccH
Confidence 010 111123356666666667777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCchhH
Q 004426 657 KAAMRCLRLARNHSSSEHER 676 (754)
Q Consensus 657 eeAl~~~~~Al~l~P~~~ea 676 (754)
++|....+.-+.+.|.+...
T Consensus 244 ~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 244 AEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHHHHhcCCCCCch
Confidence 77777777777766665543
No 159
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.50 E-value=1.4e-06 Score=81.13 Aligned_cols=99 Identities=19% Similarity=0.124 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHH
Q 004426 549 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV 628 (754)
Q Consensus 549 ~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~ 628 (754)
..++.+++++..+|+.++|+..|+++++..++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~----------------------------------------------- 34 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSG----------------------------------------------- 34 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-----------------------------------------------
Confidence 456778888888888888888888888866542
Q ss_pred HHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 629 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS---EHERLVYEGWILYDTGHREEALSRAEKSIS 702 (754)
Q Consensus 629 ~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~ 702 (754)
+.-..+++.+|.++..+|++++|++.++++++..|+ +......++.+|+..|+.+||++.+-+++.
T Consensus 35 --------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 35 --------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred --------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111245667888888888888888888888888788 777888888888888888888888877776
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.47 E-value=2.1e-06 Score=90.87 Aligned_cols=108 Identities=9% Similarity=0.006 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccch
Q 004426 547 SVDCLELRAWLF-IAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGS 625 (754)
Q Consensus 547 ~~~~~~~ra~~~-~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a 625 (754)
+...+|..+..+ ...|+|++|+..|++.++..|+.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s-------------------------------------------- 176 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS-------------------------------------------- 176 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC--------------------------------------------
Confidence 345566676644 66799999999999999999975
Q ss_pred HHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS---EHERLVYEGWILYDTGHREEALSRAEKSIS 702 (754)
Q Consensus 626 l~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~ 702 (754)
+-.+.+++.+|.++...|++++|+..|++++...|+ .+++++.+|.++..+|++++|...|++.++
T Consensus 177 -----------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 177 -----------TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred -----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122456789999999999999999999999998888 599999999999999999999999999999
Q ss_pred cCCChHH
Q 004426 703 IERTFEA 709 (754)
Q Consensus 703 l~~~~~a 709 (754)
.-|+.++
T Consensus 246 ~yP~s~~ 252 (263)
T PRK10803 246 KYPGTDG 252 (263)
T ss_pred HCcCCHH
Confidence 9999873
No 161
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.46 E-value=5e-06 Score=79.92 Aligned_cols=119 Identities=18% Similarity=0.088 Sum_probs=94.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhc
Q 004426 527 EEGQIRAAISEIDRIIVFKLSV----DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR 602 (754)
Q Consensus 527 ~lg~~~eAl~~~~rAl~l~p~~----~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~ 602 (754)
..++...+...+++.+.-.|+. .....++.++...|++++|+..|++++.-.|+..
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~-------------------- 82 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE-------------------- 82 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH--------------------
Confidence 5788888888888888888852 2234477788889999999999999988776531
Q ss_pred cccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 004426 603 SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW 682 (754)
Q Consensus 603 ~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~ 682 (754)
-.+.+++++|.++..+|++++|+..++. +.-.+-.+.++..+|.
T Consensus 83 -----------------------------------l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd 126 (145)
T PF09976_consen 83 -----------------------------------LKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD 126 (145)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence 0134567888899999999999999866 4455667788889999
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 004426 683 ILYDTGHREEALSRAEKSI 701 (754)
Q Consensus 683 ~ly~~G~~eeAl~~~e~Ai 701 (754)
++...|++++|.+.|++||
T Consensus 127 i~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999885
No 162
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.43 E-value=9e-07 Score=74.27 Aligned_cols=68 Identities=22% Similarity=0.253 Sum_probs=59.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHH
Q 004426 647 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKA 714 (754)
Q Consensus 647 g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~ 714 (754)
..++...+++++|+..+++++.++|+++.+++.+|.+++.+|++++|+..+++++++.|+.. +..+++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999877 554444
No 163
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.39 E-value=0.00027 Score=76.86 Aligned_cols=273 Identities=15% Similarity=0.044 Sum_probs=174.8
Q ss_pred hhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhh--cch-hhhhhHHHHHHHhCCHHHHHHHH
Q 004426 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA--GHI-YSLAGLARAKYKVGQQYSAYKLI 474 (754)
Q Consensus 398 ~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~--~~~-~a~~~larv~~~~G~~~~A~~~~ 474 (754)
...+..++.++-...++ ..+++..-..+.-++|+++.|=.+..+|-+. +++ ....-+++....+|++..|..-.
T Consensus 100 ~~qAEkl~~rnae~~e~---p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 100 FQQAEKLLRRNAEHGEQ---PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred HHHHHHHHHHhhhcCcc---hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44445555554333332 2344444455667789999998888888887 222 23445667788889888888888
Q ss_pred HHHHHccCCCHHHHHHhhhcCCh----hhHH---HHHHHHHhhCCCChHHHHHHHHH--HHHcCCHHH--HHHHH----H
Q 004426 475 NSIISEHKPTGWMYQERSLYNLG----REKI---VDLNYASELDPTLSFPYKYRAVA--KMEEGQIRA--AISEI----D 539 (754)
Q Consensus 475 ~~aI~~~~~~g~ay~~r~~y~~g----~eAl---~dl~kAi~LdP~~~~ay~~rg~~--l~~lg~~~e--Al~~~----~ 539 (754)
.++.+..|.+..+..-.-.+... .+.+ ..+.|+=.+.+....-+-+.+.. +.+.++-.. ++..+ -
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 88888887765544332221111 2222 23444444555544444444433 222222221 21122 2
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhcccc
Q 004426 540 RIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS 619 (754)
Q Consensus 540 rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~ 619 (754)
+.++-+ +.....-+.=+..+|+.++|......+++-.=|. + +..+++++.-
T Consensus 257 r~lr~~--p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-----~----------------------L~~~~~~l~~ 307 (400)
T COG3071 257 RKLRND--PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-----R----------------------LCRLIPRLRP 307 (400)
T ss_pred HHhhcC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-----h----------------------HHHHHhhcCC
Confidence 222222 3322333445778889999988888888765442 0 1123333222
Q ss_pred ccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 620 VDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 699 (754)
Q Consensus 620 ~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~ 699 (754)
-|.-.=...+++.+...|.++.++..+|.+..+.+.+.+|...++.|+...|+ ++.+..+|-++-.+|+.++|-+.+++
T Consensus 308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred CCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 22222355889999999999999999999999999999999999999999998 56789999999999999999999999
Q ss_pred HHhc
Q 004426 700 SISI 703 (754)
Q Consensus 700 Ai~l 703 (754)
++.+
T Consensus 387 ~L~~ 390 (400)
T COG3071 387 ALLL 390 (400)
T ss_pred HHHH
Confidence 9865
No 164
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.38 E-value=7.1e-06 Score=76.49 Aligned_cols=99 Identities=23% Similarity=0.061 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhh
Q 004426 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG 590 (754)
Q Consensus 515 ~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~----~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~ 590 (754)
+.+.+++|.++..+|+.++|+..|++|++..++ ..++..+|..+..+|++++|+..+++++.-.|+.
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~--------- 71 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD--------- 71 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------
Confidence 357899999999999999999999999998664 2455668889999999999999999999888863
Q ss_pred hHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 591 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (754)
Q Consensus 591 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 668 (754)
+.+..+....+.+|..+|+++||++.+-.++.
T Consensus 72 ----------------------------------------------~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ----------------------------------------------ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ----------------------------------------------cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22344555678899999999999999988875
No 165
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.38 E-value=1.1e-06 Score=86.20 Aligned_cols=94 Identities=16% Similarity=0.074 Sum_probs=76.1
Q ss_pred hHHHHHHHHHcCCCChhHHHhHHHHHHHc----------CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC-----
Q 004426 625 SLAVINQMLINDPGKSFLRFRQSLLLLRL----------NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH----- 689 (754)
Q Consensus 625 al~~~~~aL~l~P~~~~~~~~~g~~L~~l----------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~----- 689 (754)
|...+......+|.+++.++|=|.+|+.| ..+++|+.-|+.||.++|+.++|++++|.++..+|.
T Consensus 10 ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~ 89 (186)
T PF06552_consen 10 ARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDT 89 (186)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCCh
Confidence 35577888999999999999999999986 345789999999999999999999999999998855
Q ss_pred ------HHHHHHHHHHHHhcCCChHHHHHHHHHhhc
Q 004426 690 ------REEALSRAEKSISIERTFEAFFLKAYILAD 719 (754)
Q Consensus 690 ------~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~ 719 (754)
|++|...|++|..++|+++.|. |+.-+++
T Consensus 90 ~~A~~~F~kA~~~FqkAv~~~P~ne~Y~-ksLe~~~ 124 (186)
T PF06552_consen 90 AEAEEYFEKATEYFQKAVDEDPNNELYR-KSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT-HHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHH
Confidence 8999999999999999999875 5555443
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.37 E-value=1.1e-06 Score=72.69 Aligned_cols=65 Identities=18% Similarity=0.106 Sum_probs=58.5
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHH
Q 004426 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKA 714 (754)
Q Consensus 650 L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~ 714 (754)
|...|++++|++.|++++..+|++.++.+.+|.+++.+|++++|.+.+++++..+|+.. .+.++|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999975 555544
No 167
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.37 E-value=7.1e-06 Score=78.88 Aligned_cols=77 Identities=21% Similarity=0.191 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTL---SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLA 573 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~---~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd~~~Al~d~~~ 573 (754)
++|...|++++.-.|+. ..+..++|.+++.+|++++|+..++.+- -.+ .+..+..+|.++..+|++++|+..|++
T Consensus 65 ~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 65 DEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666677777666554 4577889999999999999999997733 122 356677899999999999999999999
Q ss_pred HH
Q 004426 574 LL 575 (754)
Q Consensus 574 al 575 (754)
||
T Consensus 144 Al 145 (145)
T PF09976_consen 144 AL 145 (145)
T ss_pred hC
Confidence 85
No 168
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=8.3e-06 Score=93.74 Aligned_cols=86 Identities=12% Similarity=0.095 Sum_probs=77.6
Q ss_pred cccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 621 DDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 699 (754)
Q Consensus 621 ~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~ 699 (754)
.++. +..++++.++++|.....||++|.+-+++++.++|..+|.+.+.++|+++++.+|++..+...|+-.+|+....+
T Consensus 499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 4444 566999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCC
Q 004426 700 SISIERT 706 (754)
Q Consensus 700 Ai~l~~~ 706 (754)
|++-+.+
T Consensus 579 AlKcn~~ 585 (777)
T KOG1128|consen 579 ALKCNYQ 585 (777)
T ss_pred HhhcCCC
Confidence 9886543
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.35 E-value=9e-07 Score=76.80 Aligned_cols=76 Identities=24% Similarity=0.211 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 498 REKIVDLNYASELDPT--LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLAL 574 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~--~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~a 574 (754)
++|+..|+++++.+|+ +...++++|.++.++|++++|+..+++ ++.+|. +...+..|.++.++|++++|+..|++|
T Consensus 6 ~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 6 ENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 8899999999999996 466788899999999999999999999 888886 588888899999999999999999875
No 170
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.34 E-value=3.8e-05 Score=80.60 Aligned_cols=196 Identities=11% Similarity=0.018 Sum_probs=124.5
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccch
Q 004426 513 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV----DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 588 (754)
Q Consensus 513 ~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~----~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~ 588 (754)
..+..++..|..+++.|++++|+..|++++...|+. .+.+..|.++.++|++++|+..|++.+++.|++.. ..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~---~~ 106 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---ID 106 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc---hH
Confidence 356678889999999999999999999999999963 23367889999999999999999999999999741 12
Q ss_pred hhhHHHHHHhhhhccccchhhhhhhhhccccccc-----cchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHH
Q 004426 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDD-----IGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCL 663 (754)
Q Consensus 589 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d-----~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~ 663 (754)
-+...++....... .-|++-+......++ ..|+..+++.+..-|++..+- +|..-
T Consensus 107 ~a~Y~~g~~~~~~~-----~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~--------------~A~~r- 166 (243)
T PRK10866 107 YVLYMRGLTNMALD-----DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT--------------DATKR- 166 (243)
T ss_pred HHHHHHHHhhhhcc-----hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH--------------HHHHH-
Confidence 23333332211110 000000000000111 125667888888888774421 11111
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH----HHHHHHHHhhccCCCCCchhHHHHHH
Q 004426 664 RLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE----AFFLKAYILADTNLDPESSTYVIQLL 734 (754)
Q Consensus 664 ~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~----a~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (754)
...+.-.-++--.+.|--+++.|++..|+..++..+.-=|+.. |-++.+-+..+-.+. +....+.++|
T Consensus 167 --l~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~-~~a~~~~~~l 238 (243)
T PRK10866 167 --LVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN-AQADKVAKII 238 (243)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh-HHHHHHHHHH
Confidence 1111111233335778889999999999999999999766554 666666666665543 3444444444
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.34 E-value=3.2e-06 Score=90.59 Aligned_cols=162 Identities=16% Similarity=0.066 Sum_probs=111.7
Q ss_pred HHHhhhhhhHhhccchHHHHHHHHHHhhhcc--------hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCC------CH
Q 004426 420 LALHQLGCVMFEREEYKDACYYFEAAADAGH--------IYSLAGLARAKYKVGQQYSAYKLINSIISEHKP------TG 485 (754)
Q Consensus 420 ~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--------~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~------~g 485 (754)
..|...|..+-..|++++|..+|.+|.+... ..++...+.+ +..+++.+|+..+.+++..+.. .+
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~-~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANC-YKKGDPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3466677788888888888888888876611 1123333344 4555888899999988876532 13
Q ss_pred HHHHHhhhc-----CChhhHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------
Q 004426 486 WMYQERSLY-----NLGREKIVDLNYASELDPTL------SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS------- 547 (754)
Q Consensus 486 ~ay~~r~~y-----~~g~eAl~dl~kAi~LdP~~------~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~------- 547 (754)
..+.+.+.. +..++|+..|.+|.++--.. ...+.+.|.++.++|+|++|+..|.+++....+
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 333333321 23388999999998873222 356778999999999999999999999985332
Q ss_pred HHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 004426 548 VDCLEL-RAWLFIAADDYESALRDTLALLALESNYM 582 (754)
Q Consensus 548 ~~~~~~-ra~~~~~lgd~~~Al~d~~~al~l~P~~~ 582 (754)
...++. .+.+++..||+..|...|++....+|.+.
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 122333 44689999999999999999999999884
No 172
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.34 E-value=1.8e-06 Score=72.41 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=47.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 522 AVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 522 g~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
..++.+.+++++|+..+++++.++|+ +..+..+|.++..+|++++|+.+|+++++.+|+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 45677788888888888888888885 6777778888888888888888888888888865
No 173
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.33 E-value=3.2e-05 Score=78.79 Aligned_cols=165 Identities=14% Similarity=0.145 Sum_probs=115.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchh
Q 004426 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (754)
Q Consensus 514 ~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~----~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~ 589 (754)
.+..++..|...++.|++.+|+..|++++...|. +.+....|.++...|++++|+..|++.++..|++.. ..-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~---~~~ 80 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK---ADY 80 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT---HHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc---hhh
Confidence 3577889999999999999999999999999884 466677899999999999999999999999998742 111
Q ss_pred hhHHHHHHhhhhccccchhhhhhhhhcc----cccccc-chHHHHHHHHHcCCCChhHH-----------------HhHH
Q 004426 590 GDHLVKLLNHHVRSWSPADCWIKLYDRW----SSVDDI-GSLAVINQMLINDPGKSFLR-----------------FRQS 647 (754)
Q Consensus 590 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~----~~~~d~-~al~~~~~aL~l~P~~~~~~-----------------~~~g 647 (754)
+...++... ....... .+.... .|+..++..+..-|++..+- +..|
T Consensus 81 A~Y~~g~~~------------~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 81 ALYMLGLSY------------YKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHHHHHHHH------------HHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------HHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222110 1111000 001111 25778888899999887662 3557
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHcCCHHHH
Q 004426 648 LLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEA 693 (754)
Q Consensus 648 ~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~ly~~G~~eeA 693 (754)
..+.+.|.+.+|+.-++.+++.-|+. .+|+..++..++.+|..+.|
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 77788999999999999999999986 57789999999999998844
No 174
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.1e-05 Score=85.20 Aligned_cols=122 Identities=14% Similarity=0.104 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccch
Q 004426 529 GQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPA 607 (754)
Q Consensus 529 g~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A 607 (754)
...++-++-++.-|+.||+ .+.|..+|-+|..+|++..|+..|++|++|.|++.
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~------------------------- 190 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP------------------------- 190 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH-------------------------
Confidence 3578888899999999995 89999999999999999999999999999999872
Q ss_pred hhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcC---CHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 004426 608 DCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN---CQKAAMRCLRLARNHSSSEHERLVYEGWIL 684 (754)
Q Consensus 608 ~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg---~~eeAl~~~~~Al~l~P~~~ea~~~~G~~l 684 (754)
+.+-..|.+|.... .-.+|...+++|++++|+|..+++++|..+
T Consensus 191 ---------------------------------~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~a 237 (287)
T COG4235 191 ---------------------------------EILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAA 237 (287)
T ss_pred ---------------------------------HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 22333444444433 335799999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCChH
Q 004426 685 YDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 685 y~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
+.+|+|.+|+..++.-++..|...
T Consensus 238 fe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 238 FEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999877655
No 175
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.24 E-value=5.7e-06 Score=76.70 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=80.5
Q ss_pred chHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 624 GSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE----HERLVYEGWILYDTGHREEALSRAEK 699 (754)
Q Consensus 624 ~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~----~ea~~~~G~~ly~~G~~eeAl~~~e~ 699 (754)
+|+.-|.|+|.+.|..+.+|+|++-++-..|++++|+.++++|+++.-+- ..+++.+|.++-.+|+-|.|-..|+.
T Consensus 61 ~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~ 140 (175)
T KOG4555|consen 61 GALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEA 140 (175)
T ss_pred HHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHH
Confidence 37999999999999999999999999999999999999999999998764 57899999999999999999999999
Q ss_pred HHhcCCChH
Q 004426 700 SISIERTFE 708 (754)
Q Consensus 700 Ai~l~~~~~ 708 (754)
|-.+-.+|.
T Consensus 141 AA~LGS~FA 149 (175)
T KOG4555|consen 141 AAQLGSKFA 149 (175)
T ss_pred HHHhCCHHH
Confidence 999998887
No 176
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.22 E-value=1.1e-06 Score=74.77 Aligned_cols=68 Identities=21% Similarity=0.156 Sum_probs=58.8
Q ss_pred CCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcC-------CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS-------SSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (754)
Q Consensus 637 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-------P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~ 704 (754)
|.-+.+++++|.++..+|++++|+..|++|+++. |+-+.+++++|++++.+|++++|++.|++|++|.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3446789999999999999999999999999662 2336789999999999999999999999999873
No 177
>PRK15331 chaperone protein SicA; Provisional
Probab=98.21 E-value=2.1e-05 Score=76.54 Aligned_cols=110 Identities=13% Similarity=-0.023 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHH
Q 004426 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (754)
Q Consensus 548 ~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 627 (754)
.+..|..|.-+...|++++|...|+-...+||
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~------------------------------------------------ 68 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDF------------------------------------------------ 68 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------------------------------------------------
Confidence 45566677777888888888877766555444
Q ss_pred HHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004426 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (754)
Q Consensus 628 ~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~ 707 (754)
+++++|+.+|.++..++.+++|+..|-.|..++++|+...++.|.|++.+|+.++|...|+-++. +|..
T Consensus 69 ----------~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 69 ----------YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred ----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 44566777777777777777788888777777777777777788888888888888877777777 5665
Q ss_pred HHHHHHHHH
Q 004426 708 EAFFLKAYI 716 (754)
Q Consensus 708 ~a~~~~~~~ 716 (754)
..-.-||-+
T Consensus 138 ~~l~~~A~~ 146 (165)
T PRK15331 138 ESLRAKALV 146 (165)
T ss_pred HHHHHHHHH
Confidence 555555544
No 178
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.21 E-value=3.1e-06 Score=82.99 Aligned_cols=84 Identities=17% Similarity=0.057 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCC---
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQ----------IRAAISEIDRIIVFKLS-VDCLELRAWLFIAADD--- 563 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~----------~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd--- 563 (754)
+.|.+.++.+...||.+++++++-|.+|.++.+ +++|++-|+.||.++|+ .+++++.|++|..++.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 667788888899999999999999999988744 46788889999999997 6778888877665554
Q ss_pred --------HHHHHHHHHHHHhcCCCc
Q 004426 564 --------YESALRDTLALLALESNY 581 (754)
Q Consensus 564 --------~~~Al~d~~~al~l~P~~ 581 (754)
|+.|...|++|...+|++
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 788888899999999987
No 179
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.00023 Score=74.53 Aligned_cols=301 Identities=15% Similarity=0.116 Sum_probs=183.8
Q ss_pred cchhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcchhhh--hhHHHHHHHhCCHHHHHHH
Q 004426 396 RVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSL--AGLARAKYKVGQQYSAYKL 473 (754)
Q Consensus 396 ~r~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~a~--~~larv~~~~G~~~~A~~~ 473 (754)
.|...+++++..-.+-.+ +...++..+|-.|...++|.+|..||++.-..-|..+. .+.+..+++.|.+..|...
T Consensus 24 ~ry~DaI~~l~s~~Er~p---~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSP---RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred hhHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 345556666654332222 23356778999999999999999999987666554432 2345566777777666554
Q ss_pred HHHHHHccCCC-HHHHHHh--hhcCChhhHHHHHHHHHhhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C
Q 004426 474 INSIISEHKPT-GWMYQER--SLYNLGREKIVDLNYASELDP--TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-S 547 (754)
Q Consensus 474 ~~~aI~~~~~~-g~ay~~r--~~y~~g~eAl~dl~kAi~LdP--~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p-~ 547 (754)
.... ...+++ ....+-. -.|..+ -+.--+..++.-| +.+....+.|-++.+.|++++|+.-|+.|+++.- +
T Consensus 101 ~~~~-~D~~~L~~~~lqLqaAIkYse~--Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 101 AFLL-LDNPALHSRVLQLQAAIKYSEG--DLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHh-cCCHHHHHHHHHHHHHHhcccc--cCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 3322 111211 1111111 122222 1111234455566 6788999999999999999999999999999877 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCc----------cccccchh---------hhHHHHHHhhhhccc
Q 004426 548 VDCLELRAWLFIAADDYESALRDTLALLALE----SNY----------MMFHGRVS---------GDHLVKLLNHHVRSW 604 (754)
Q Consensus 548 ~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~----P~~----------~~~~~~~~---------~~~~~~~l~~~~~~~ 604 (754)
+-..|+.+.++...|+++.|+.....+++.. |.. .-+.|+.. +.++...+.-..+++
T Consensus 178 pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~ 257 (459)
T KOG4340|consen 178 PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNY 257 (459)
T ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccH
Confidence 7788999999999999999999988887743 332 11233322 233333333333333
Q ss_pred cchhhhhhhhhccccccccchHHHHHHHHHcCCC-----ChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHH
Q 004426 605 SPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG-----KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY 679 (754)
Q Consensus 605 ~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~-----~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~ 679 (754)
+.|. +.-+.+-|+ +|....|++.. ..-+++.+..+-++-.++++|--.|..-|
T Consensus 258 eAA~---------------------eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFAN 315 (459)
T KOG4340|consen 258 EAAQ---------------------EALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFAN 315 (459)
T ss_pred HHHH---------------------HHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHH
Confidence 3331 111222222 34455566533 23466777888888888888877777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhccCCCCCchhHHHHHHHHHhcCCC
Q 004426 680 EGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS 742 (754)
Q Consensus 680 ~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (754)
+=+++.+..-|+-|-.. ++-+|+..=+|| |.|...||+--.-||.
T Consensus 316 lLllyCKNeyf~lAADv----LAEn~~lTyk~L--------------~~Yly~LLdaLIt~qT 360 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADV----LAENAHLTYKFL--------------TPYLYDLLDALITCQT 360 (459)
T ss_pred HHHHHhhhHHHhHHHHH----HhhCcchhHHHh--------------hHHHHHHHHHHHhCCC
Confidence 77777777666666543 444666655555 3455566666666654
No 180
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=1.9e-05 Score=79.22 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 515 ~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
+.-++.||+.|-.+|=..-|--||+++++++|+ |+.++..|.-+..-|+|+.|...|+-++++||.|
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y 132 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 132 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc
Confidence 445556666666666666666666666666665 5555556666666666666666666666666655
No 181
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.16 E-value=7.1e-05 Score=80.04 Aligned_cols=144 Identities=18% Similarity=0.154 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccch
Q 004426 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-------VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 588 (754)
Q Consensus 516 ~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-------~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~ 588 (754)
++...+|.++..++.++.+++.|++|+.+.-+ .......+-++-.++|+++|+-.-.+|.++--++-
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~------ 196 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG------ 196 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC------
Confidence 55666778888888888888888888877432 12344566677777777777777777776665540
Q ss_pred hhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (754)
Q Consensus 589 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 668 (754)
++|. =..|+.+ +.+.++.+|-++|+...|++..+.|.+
T Consensus 197 -------------------------------l~d~--~~kyr~~---------~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 197 -------------------------------LKDW--SLKYRAM---------SLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred -------------------------------cCch--hHHHHHH---------HHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 0111 1122222 346789999999999999999999988
Q ss_pred cCCCc------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004426 669 HSSSE------HERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (754)
Q Consensus 669 l~P~~------~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~ 707 (754)
+.-.. +.-+...|-|+-..|+.|.||+.||+|+.+..+-
T Consensus 235 lal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~ 279 (518)
T KOG1941|consen 235 LALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL 279 (518)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh
Confidence 76443 4445678999999999999999999999987664
No 182
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.16 E-value=2e-06 Score=98.94 Aligned_cols=68 Identities=18% Similarity=0.117 Sum_probs=54.8
Q ss_pred CCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCC------------cceEEecCCCCCHHHHHHHHHHhhcCC
Q 004426 215 EEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESK------------RKTIDFSHDGVSVEGLRAVEVYTRTSR 282 (754)
Q Consensus 215 ~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~------------~~~I~l~~~~vs~~~f~~lL~ylYTg~ 282 (754)
++..+|||.||+..|+|||.||++||++|+.+|-..-.-|. ..+|.+ +++.|..|+.+|+||||++
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~v--e~i~p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRV--EDIPPLMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeee--ccCCHHHHHHHHHHHhccc
Confidence 44445999999999999999999999999999965322221 125556 8999999999999999996
Q ss_pred CC
Q 004426 283 VD 284 (754)
Q Consensus 283 l~ 284 (754)
+-
T Consensus 634 ~~ 635 (1267)
T KOG0783|consen 634 LL 635 (1267)
T ss_pred cc
Confidence 53
No 183
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=98.15 E-value=2.6e-06 Score=76.54 Aligned_cols=84 Identities=12% Similarity=0.140 Sum_probs=68.6
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCchhhhhh--------ccCchhhHHHHhcccchhHHHHHHHHHHhhhh
Q 004426 324 ALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI--------FCSSEATERLANVGHASFLLYYFLSQVAMEKD 395 (754)
Q Consensus 324 ~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~e~f~~L--------l~~~~~~~~l~~v~~~~~~~~a~LswV~~d~~ 395 (754)
|+.++.+|..|+.++|.+.|.+||..||.++.++++|.++ +.+++. .+..+..++.+++.|+.++..
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l-----~v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDL-----NVSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS-------ECTCCCHHHHHHHHHHCTHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhcccc-----ccccHHHHHHHHHHHHHhCHH
Confidence 7899999999999999999999999999999999999876 222222 256778899999999999988
Q ss_pred cchhhHHHHHHHhhhchh
Q 004426 396 RVSNTTVMLLERLGECST 413 (754)
Q Consensus 396 ~r~~~~v~LLer~vr~~~ 413 (754)
.|.++...+++. +|++.
T Consensus 76 ~r~~~~~~Ll~~-iR~~~ 92 (103)
T PF07707_consen 76 NREEHLKELLSC-IRFPL 92 (103)
T ss_dssp HHTTTHHHHHCC-CHHHC
T ss_pred HHHHHHHHHHHh-CCccc
Confidence 778888888865 66543
No 184
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.13 E-value=1.5e-06 Score=96.10 Aligned_cols=84 Identities=20% Similarity=0.237 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
+.|+.-|.|||+++|+.+..|-+|+.++...+.+.+|+.|+++||+++|. ..+|+.||.+..+++++.+|+.+|++...
T Consensus 21 d~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 21 DVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKK 100 (476)
T ss_pred HHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhh
Confidence 77788888888888888888888888888888888888888888888886 56667788888888888888888888888
Q ss_pred cCCCc
Q 004426 577 LESNY 581 (754)
Q Consensus 577 l~P~~ 581 (754)
+.|+.
T Consensus 101 l~Pnd 105 (476)
T KOG0376|consen 101 LAPND 105 (476)
T ss_pred cCcCc
Confidence 88876
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.11 E-value=0.00012 Score=78.48 Aligned_cols=195 Identities=16% Similarity=0.113 Sum_probs=130.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--C--H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhh
Q 004426 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKL--S--V---DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG 590 (754)
Q Consensus 518 y~~rg~~l~~lg~~~eAl~~~~rAl~l~p--~--~---~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~ 590 (754)
|..-|+.+...|++++|...|.+|..+.- + . ..+..-+.++ ..+++++|+..|++|+++--.. |+..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~----G~~~- 111 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREA----GRFS- 111 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHC----T-HH-
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhc----CcHH-
Confidence 45557788889999999999999987732 1 1 2222333444 4449999999999999864221 1100
Q ss_pred hHHHHHHhhhhccccchhhhhhhhhccccc-cccc-hHHHHHHHHHcCC--CC----hhHHHhHHHHHHHcCCHHHHHHH
Q 004426 591 DHLVKLLNHHVRSWSPADCWIKLYDRWSSV-DDIG-SLAVINQMLINDP--GK----SFLRFRQSLLLLRLNCQKAAMRC 662 (754)
Q Consensus 591 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~-~d~~-al~~~~~aL~l~P--~~----~~~~~~~g~~L~~lg~~eeAl~~ 662 (754)
..|.++..+...+... ++++ |+..|.+|+++-- +. ...+.+.|.++.++|++++|+..
T Consensus 112 --------------~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~ 177 (282)
T PF14938_consen 112 --------------QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEI 177 (282)
T ss_dssp --------------HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 1133344444444444 4555 6888999888732 22 34567899999999999999999
Q ss_pred HHHHHhcCCCc-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHhhccCCCCCchhHHH
Q 004426 663 LRLARNHSSSE-------HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYVI 731 (754)
Q Consensus 663 ~~~Al~l~P~~-------~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~----~a~~~~~~~~~~~~~~~~~~~~~~ 731 (754)
|++.....-++ .+.+..-+.|++.+||.-.|...+++...++|+| |.-|+....-|=.+-|++.-..+|
T Consensus 178 ~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av 257 (282)
T PF14938_consen 178 YEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAV 257 (282)
T ss_dssp HHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHC
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99998754322 2445778999999999999999999999999866 466677666666666777666554
Q ss_pred H
Q 004426 732 Q 732 (754)
Q Consensus 732 ~ 732 (754)
.
T Consensus 258 ~ 258 (282)
T PF14938_consen 258 A 258 (282)
T ss_dssp H
T ss_pred H
Confidence 3
No 186
>PRK15331 chaperone protein SicA; Provisional
Probab=98.09 E-value=4.9e-05 Score=73.97 Aligned_cols=120 Identities=12% Similarity=0.070 Sum_probs=84.4
Q ss_pred HHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccc
Q 004426 506 YASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMF 584 (754)
Q Consensus 506 kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~ 584 (754)
.+..+.++.-+..+..|.-+...|++++|...|+-...++| +++.+..+|.++..+|+|++|+..|-.|..+++++
T Consensus 28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d--- 104 (165)
T PRK15331 28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND--- 104 (165)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC---
Confidence 34455555566667777788888888888888888888888 46766778888888888888887777666666643
Q ss_pred ccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHH
Q 004426 585 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLR 664 (754)
Q Consensus 585 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~ 664 (754)
+...|..|.|++.+|+.++|+.+|.
T Consensus 105 -------------------------------------------------------p~p~f~agqC~l~l~~~~~A~~~f~ 129 (165)
T PRK15331 105 -------------------------------------------------------YRPVFFTGQCQLLMRKAAKARQCFE 129 (165)
T ss_pred -------------------------------------------------------CCccchHHHHHHHhCCHHHHHHHHH
Confidence 3446777888888888888888888
Q ss_pred HHHhcCCCchhHHHHHHHHHH
Q 004426 665 LARNHSSSEHERLVYEGWILY 685 (754)
Q Consensus 665 ~Al~l~P~~~ea~~~~G~~ly 685 (754)
.|++ +|.++ .+..++..++
T Consensus 130 ~a~~-~~~~~-~l~~~A~~~L 148 (165)
T PRK15331 130 LVNE-RTEDE-SLRAKALVYL 148 (165)
T ss_pred HHHh-CcchH-HHHHHHHHHH
Confidence 8887 45533 3333444333
No 187
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.06 E-value=0.001 Score=78.55 Aligned_cols=246 Identities=17% Similarity=0.094 Sum_probs=165.2
Q ss_pred hCCHHHHHHHHHHHHHccCCCHHHHHHhh----hcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 004426 464 VGQQYSAYKLINSIISEHKPTGWMYQERS----LYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEID 539 (754)
Q Consensus 464 ~G~~~~A~~~~~~aI~~~~~~g~ay~~r~----~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~ 539 (754)
.+++..|+....+....+|+...+..--+ ..+.|++|...++..-.+.|++-...--+-.+|.++|++++|...|.
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34555566666666666665322221111 23455777777888888888888888899999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhcccc
Q 004426 540 RIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS 619 (754)
Q Consensus 540 rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~ 619 (754)
|+++-+|+.+..+....+|.+-++|.+=-+.=-+.-+.-|+.+.|++.+.-..+++ ....+...
T Consensus 102 ~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs-----~~~~~~~~----------- 165 (932)
T KOG2053|consen 102 RANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQS-----IFSENELL----------- 165 (932)
T ss_pred HHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHh-----ccCCcccc-----------
Confidence 99999999777777888888888886644444444457898888888777655543 22333331
Q ss_pred ccccc-hHH--HHHHHHHcC-CCChhH-HHhHHHHHHHcCCHHHHHHHH-HHHHhcCCCchhHHHHHHHHHH-HcCCHHH
Q 004426 620 VDDIG-SLA--VINQMLIND-PGKSFL-RFRQSLLLLRLNCQKAAMRCL-RLARNHSSSEHERLVYEGWILY-DTGHREE 692 (754)
Q Consensus 620 ~~d~~-al~--~~~~aL~l~-P~~~~~-~~~~g~~L~~lg~~eeAl~~~-~~Al~l~P~~~ea~~~~G~~ly-~~G~~ee 692 (754)
+.+- +++ .+.+.++.. +-...+ -+-.=.+|..+|..+||.+.+ ..-.+..++....+.+++.-++ .++++++
T Consensus 166 -~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 166 -DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred -cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence 1011 233 677777776 222222 223345777899999999999 4555666666667766666554 5699999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhhccCCCCCchhHHHHHHHHHhcCC
Q 004426 693 ALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCP 741 (754)
Q Consensus 693 Al~~~e~Ai~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (754)
-.+.-.|.+.-.|+. .|.|+ || |-++||+..+=|
T Consensus 245 l~~l~~~Ll~k~~Dd----y~~~~--~s---------v~klLe~~~~~~ 278 (932)
T KOG2053|consen 245 LFELSSRLLEKGNDD----YKIYT--DS---------VFKLLELLNKEP 278 (932)
T ss_pred HHHHHHHHHHhCCcc----hHHHH--HH---------HHHHHHhccccc
Confidence 999999999999996 33333 11 566666665554
No 188
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=9.6e-05 Score=83.46 Aligned_cols=175 Identities=15% Similarity=0.111 Sum_probs=123.2
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL 577 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l 577 (754)
++|....++.+...|+...+....-++++++++|++|+..+++=-.+.-.....+.+++|.+++++.|+|+.+++ .+
T Consensus 29 e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~ 105 (652)
T KOG2376|consen 29 EEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GL 105 (652)
T ss_pred HHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cc
Confidence 899999999999999999999999999999999999994444333222222222579999999999999999999 44
Q ss_pred CCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHH
Q 004426 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 657 (754)
Q Consensus 578 ~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~e 657 (754)
++.. ..+.+++..+.-.++++++| +.+|+.-+..+-.+-+.-. ++.++...-..+
T Consensus 106 ~~~~------~~ll~L~AQvlYrl~~ydea------------------ldiY~~L~kn~~dd~d~~~-r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 106 DRLD------DKLLELRAQVLYRLERYDEA------------------LDIYQHLAKNNSDDQDEER-RANLLAVAAALQ 160 (652)
T ss_pred cccc------hHHHHHHHHHHHHHhhHHHH------------------HHHHHHHHhcCCchHHHHH-HHHHHHHHHhhh
Confidence 4443 33566665555555555555 6666666666655544331 222222211111
Q ss_pred HHHHHHHHHHhcCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 658 AAMRCLRLARNHSSS-EHERLVYEGWILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 658 eAl~~~~~Al~l~P~-~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
+. ..++....|. ..+-+||.+.++...|+|.+|++..++|+.+
T Consensus 161 -~~--~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 161 -VQ--LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI 204 (652)
T ss_pred -HH--HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 11 2344455555 6778999999999999999999999999665
No 189
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.00041 Score=71.91 Aligned_cols=166 Identities=14% Similarity=0.202 Sum_probs=134.6
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhh
Q 004426 512 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (754)
Q Consensus 512 P~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~ 591 (754)
-++.-...--|.+++.-|++++|+....+.. +.++...--.++.++.+.+-|...+++...++-+. ..
T Consensus 105 ~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--------tL 172 (299)
T KOG3081|consen 105 GSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--------TL 172 (299)
T ss_pred chhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--------HH
Confidence 3344556667889999999999998777633 23444445578999999999999999999999874 22
Q ss_pred HHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (754)
Q Consensus 592 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 671 (754)
.. .|.+|+.+...-..+.| |.=+|+.+=+..|..+.+.+.++.+...+||++||...++.|+.-++
T Consensus 173 tQ------------LA~awv~la~ggek~qd--AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 173 TQ------------LAQAWVKLATGGEKIQD--AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HH------------HHHHHHHHhccchhhhh--HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 21 27778888877555443 36688888888999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 672 SEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 672 ~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
++++.+.|+=.+-..+|.-.++...+---+..
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999999999999998888877665554
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.03 E-value=0.00033 Score=71.40 Aligned_cols=149 Identities=20% Similarity=0.122 Sum_probs=106.0
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhhcc-----hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCC---HHHHHH
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGH-----IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPT---GWMYQE 490 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~-----~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~---g~ay~~ 490 (754)
..+++..|...+..|+|.+|+..|++.+..-| ..+...+|.+++..|++..|+..+++.|..+|+. ..+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 45678899999999999999999998887733 2467788999999999999999999999998863 445555
Q ss_pred hhhcC------------C---hhhHHHHHHHHHhhCCCChHH-----------------HHHHHHHHHHcCCHHHHHHHH
Q 004426 491 RSLYN------------L---GREKIVDLNYASELDPTLSFP-----------------YKYRAVAKMEEGQIRAAISEI 538 (754)
Q Consensus 491 r~~y~------------~---g~eAl~dl~kAi~LdP~~~~a-----------------y~~rg~~l~~lg~~~eAl~~~ 538 (754)
+|... . ..+|+..|+..+..-|+...+ -+..|..|.+.|++..|+.-+
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 54310 0 146788888888888887533 344677788888888888888
Q ss_pred HHHHHcCCC----HHHHHHHHHHHHHcCCHHHH
Q 004426 539 DRIIVFKLS----VDCLELRAWLFIAADDYESA 567 (754)
Q Consensus 539 ~rAl~l~p~----~~~~~~ra~~~~~lgd~~~A 567 (754)
+.+|+--|+ .+++......+.++|..+.|
T Consensus 165 ~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 165 QYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 888888785 23445566678888877733
No 191
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.02 E-value=6.5e-06 Score=70.10 Aligned_cols=67 Identities=19% Similarity=0.183 Sum_probs=56.9
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 512 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK----LS----VDCLELRAWLFIAADDYESALRDTLALLALE 578 (754)
Q Consensus 512 P~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~----p~----~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~ 578 (754)
|+.+.+|.++|.++.++|++++|+..|++|+.+. ++ ..++.+.|.++..+|++++|+..|++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4557889999999999999999999999999772 22 2346779999999999999999999999864
No 192
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.01 E-value=0.0092 Score=68.46 Aligned_cols=295 Identities=12% Similarity=0.051 Sum_probs=173.3
Q ss_pred HHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhc-----ch-----hhhhhHHHHHHHhC-----
Q 004426 401 TVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG-----HI-----YSLAGLARAKYKVG----- 465 (754)
Q Consensus 401 ~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~-----~~-----~a~~~larv~~~~G----- 465 (754)
...++...++--++.+ ...+..|+.-|...|.++.|...|+.++..- .+ ++.+.-.-+....+
T Consensus 232 vdaiiR~gi~rftDq~--g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~ 309 (835)
T KOG2047|consen 232 VDAIIRGGIRRFTDQL--GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEE 309 (835)
T ss_pred HHHHHHhhcccCcHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4445554433223332 3457788899999999999999999988761 11 11111000111111
Q ss_pred --------CHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004426 466 --------QQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISE 537 (754)
Q Consensus 466 --------~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~ 537 (754)
+.+-....+++.+..+|-+ .=+-+++.||++..-|.+|-.++ .|+..+-+..
T Consensus 310 ~~n~ed~~dl~~~~a~~e~lm~rr~~~------------------lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~t 369 (835)
T KOG2047|consen 310 SGNEEDDVDLELHMARFESLMNRRPLL------------------LNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINT 369 (835)
T ss_pred ccChhhhhhHHHHHHHHHHHHhccchH------------------HHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHH
Confidence 0111122233333332210 11357888999999999986654 5788889999
Q ss_pred HHHHHHc-CCC-----H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhh
Q 004426 538 IDRIIVF-KLS-----V-DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCW 610 (754)
Q Consensus 538 ~~rAl~l-~p~-----~-~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~ 610 (754)
|..|+.- +|. + .+|...|-+|...|+.+.|..-|++|.+.+=.... +.|..|
T Consensus 370 yteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~---------------------dLa~vw 428 (835)
T KOG2047|consen 370 YTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE---------------------DLAEVW 428 (835)
T ss_pred HHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH---------------------HHHHHH
Confidence 9998865 662 2 34556777899999999999999999987754310 112223
Q ss_pred hhhhhccccccccc-hHHHHHHHHHcCCCCh-------------------hHHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 611 IKLYDRWSSVDDIG-SLAVINQMLINDPGKS-------------------FLRFRQSLLLLRLNCQKAAMRCLRLARNHS 670 (754)
Q Consensus 611 ~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~-------------------~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~ 670 (754)
.+-.+....-.+++ |+.++++|... |.++ ..|-..+.+..-+|=++.-...|++.+.+.
T Consensus 429 ~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 429 CAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 33333322223333 45555555554 3332 234445555555677777777777777777
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-Ch--H---HHHHHHHHhhccCCCCCchhHHHHHHHHHhc-CCCC
Q 004426 671 SSEHERLVYEGWILYDTGHREEALSRAEKSISIER-TF--E---AFFLKAYILADTNLDPESSTYVIQLLEEALR-CPSD 743 (754)
Q Consensus 671 P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~-~~--~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 743 (754)
=--+....|.|..|-.-.-|+++.+.|||-|+|=+ .. + .|.-|... -=++.-+ ...-.|.|.||+ ||.+
T Consensus 508 iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~-rygg~kl---EraRdLFEqaL~~Cpp~ 583 (835)
T KOG2047|consen 508 IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK-RYGGTKL---ERARDLFEQALDGCPPE 583 (835)
T ss_pred cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH-HhcCCCH---HHHHHHHHHHHhcCCHH
Confidence 77777778888877777778888888888887732 21 1 44445444 1122222 234567777775 6643
No 193
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.00 E-value=5.2e-06 Score=59.59 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=26.4
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHcCCHHHHH
Q 004426 663 LRLARNHSSSEHERLVYEGWILYDTGHREEAL 694 (754)
Q Consensus 663 ~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 694 (754)
|++|++++|+|+++++++|++|+..|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888888888888888888888888888875
No 194
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.99 E-value=7.7e-05 Score=83.22 Aligned_cols=94 Identities=23% Similarity=0.165 Sum_probs=81.2
Q ss_pred hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (754)
Q Consensus 625 al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~ 704 (754)
|+..++++|...|.+++++.-++..|...++++.|+...++|.++.|++-+.++.++.++..+|++++|+...+ ++-+.
T Consensus 219 AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN-s~Pm~ 297 (395)
T PF09295_consen 219 AIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN-SCPML 297 (395)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh-cCcCC
Confidence 46678888888888899999999999999999999999999999999999999999999999999999996665 66666
Q ss_pred CChHHHHHHHHHhhc
Q 004426 705 RTFEAFFLKAYILAD 719 (754)
Q Consensus 705 ~~~~a~~~~~~~~~~ 719 (754)
|..+-+-+|-.+-.+
T Consensus 298 ~~~~k~~~~~~~p~~ 312 (395)
T PF09295_consen 298 TYKDKYKLKRPVPAK 312 (395)
T ss_pred CCccchhhhcCCCcc
Confidence 777766666655443
No 195
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.99 E-value=3.3e-05 Score=79.15 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=84.6
Q ss_pred EEEEECCeEEehhhHHHhhcCHHHHHhhcCCCC-C-CCcceEEecCCCCCHHHHHHHHHHhhcCCCCC-CChhHHHHHHH
Q 004426 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFV-E-SKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL-FCPGIVLELLS 296 (754)
Q Consensus 220 V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~-E-s~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~-i~~~~vlelL~ 296 (754)
|.+-|||..|..+|.-|.--..+|++||.+++. + ...+.|-| |=||.-|..||+||-.|.+.. -+...+.||+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI---DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI---DRSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe---cCChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 889999999999999999999999999999873 3 23357888 789999999999999888872 24467889999
Q ss_pred HhchhChhhHHHHHHHHHHhhcC
Q 004426 297 FANRFCCEEMKSACDAHLASLVG 319 (754)
Q Consensus 297 aA~~f~l~~Lk~~Ce~~L~~~i~ 319 (754)
=|.+|.+++|.+.|...+...+.
T Consensus 84 EA~fYlL~~Lv~~C~~~i~~~~~ 106 (230)
T KOG2716|consen 84 EAEFYLLDGLVELCQSAIARLIR 106 (230)
T ss_pred HHHHhhHHHHHHHHHHHhhhccc
Confidence 99999999999999998887665
No 196
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=1.9e-05 Score=80.24 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
.+|+..|.+||.++|+.+.+|.||+..++++++++.+..+.+||++|+|+ ...++..|..+.....|++||..+++|..
T Consensus 27 ~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 27 DDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred chHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999998 68889999999999999999999999965
Q ss_pred cC
Q 004426 577 LE 578 (754)
Q Consensus 577 l~ 578 (754)
+-
T Consensus 107 l~ 108 (284)
T KOG4642|consen 107 LL 108 (284)
T ss_pred HH
Confidence 43
No 197
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.00068 Score=72.51 Aligned_cols=255 Identities=13% Similarity=0.095 Sum_probs=134.7
Q ss_pred hhhhhHhhccchHHHHHHHHHHhhhc--chhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHH
Q 004426 424 QLGCVMFEREEYKDACYYFEAAADAG--HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKI 501 (754)
Q Consensus 424 ~LG~v~~~~g~~~eA~~~f~~AL~~~--~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl 501 (754)
-+|-.++..|+|++|...|..+.+.. +...+.+++-+++-+|.+.+|-....++....- --...++.+.-...++.+
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL-~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPL-CIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHHhCcHHHH
Confidence 36777889999999999998777653 334577788899999999888655443321100 001111111111113444
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 502 VDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLE-LRAWLFIAADDYESALRDTLALLALESN 580 (754)
Q Consensus 502 ~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~-~ra~~~~~lgd~~~Al~d~~~al~l~P~ 580 (754)
..|..-+. +-.+-...+|.+....-.|+|||+.|.|++.-+|+..+++ +.+.+|.++.=|+-+-..+.--++--||
T Consensus 141 ~~fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 141 LTFHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD 217 (557)
T ss_pred HHHHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence 44443332 2224455566666666667788888888887777765554 4667777777777776666666666666
Q ss_pred cc------------ccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHH
Q 004426 581 YM------------MFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSL 648 (754)
Q Consensus 581 ~~------------~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~ 648 (754)
.. .+.||.+......+.+..-+.+..+..+..-.-..-+ +--+||.++---+.. =|+++.|+..
T Consensus 218 StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFr-ngEgALqVLP~L~~~---IPEARlNL~i 293 (557)
T KOG3785|consen 218 STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFR-NGEGALQVLPSLMKH---IPEARLNLII 293 (557)
T ss_pred cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEe-CCccHHHhchHHHhh---ChHhhhhhee
Confidence 42 1223333332222222222222222111100000000 011123322222222 2455666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC
Q 004426 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH 689 (754)
Q Consensus 649 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~ 689 (754)
-++++|+.+||.... -.++|..+.-+...|.+...+|+
T Consensus 294 YyL~q~dVqeA~~L~---Kdl~PttP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLC---KDLDPTTPYEYILKGVVFAALGQ 331 (557)
T ss_pred eecccccHHHHHHHH---hhcCCCChHHHHHHHHHHHHhhh
Confidence 666666666665543 34666666666666666666554
No 198
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.96 E-value=2.2e-06 Score=91.07 Aligned_cols=83 Identities=23% Similarity=0.236 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
+.|+++|.+||+++|..+..|.+||.+++.+++...|+.+++.|++++|+ ..-|-.|+.+...+|+|++|-.|++.|.+
T Consensus 131 ~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~k 210 (377)
T KOG1308|consen 131 DTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACK 210 (377)
T ss_pred hhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHh
Confidence 78899999999999999999999999999999999999999999999997 45566799999999999999999999999
Q ss_pred cCCC
Q 004426 577 LESN 580 (754)
Q Consensus 577 l~P~ 580 (754)
++=+
T Consensus 211 ld~d 214 (377)
T KOG1308|consen 211 LDYD 214 (377)
T ss_pred cccc
Confidence 8865
No 199
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.95 E-value=1.4e-05 Score=88.66 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=80.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHh
Q 004426 520 YRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLN 598 (754)
Q Consensus 520 ~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~ 598 (754)
+-|.-...-+.++.|+.-|.+||.++|+ +..+.+|+.++.+.+++-+|+.|..+|++++|.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~----------------- 71 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY----------------- 71 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh-----------------
Confidence 3344445555666666666666666664 4444556666666666666666666666666554
Q ss_pred hhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHH
Q 004426 599 HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLV 678 (754)
Q Consensus 599 ~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~ 678 (754)
..+|+++|.+-.+++++.+|+.+|+....+.|++.++.-
T Consensus 72 -----------------------------------------~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r 110 (476)
T KOG0376|consen 72 -----------------------------------------IKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATR 110 (476)
T ss_pred -----------------------------------------hheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHH
Confidence 566888888889999999999999999999999998876
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 679 YEGWILYDTGHREEALSRAEKSISIE 704 (754)
Q Consensus 679 ~~G~~ly~~G~~eeAl~~~e~Ai~l~ 704 (754)
-.-.|-+-.. -..||+||.-.
T Consensus 111 ~~~Ec~~~vs-----~~~fe~ai~~~ 131 (476)
T KOG0376|consen 111 KIDECNKIVS-----EEKFEKAILTP 131 (476)
T ss_pred HHHHHHHHHH-----HHhhhhcccCC
Confidence 6555544332 22455555443
No 200
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.92 E-value=0.00024 Score=67.71 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 515 ~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~----~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
+..++..|...++.|+|++|+..|..+..--|- ..+...++.+|.+.|++++|++.+++-++|+|++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 467888999999999999999999999999883 3445568899999999999999999999999987
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.88 E-value=0.001 Score=65.74 Aligned_cols=167 Identities=14% Similarity=0.101 Sum_probs=106.0
Q ss_pred hhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF--KLSVDCLELRAWLFIAADDYESALRDTLAL 574 (754)
Q Consensus 497 g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l--~p~~~~~~~ra~~~~~lgd~~~Al~d~~~a 574 (754)
.+..+....+.++..|+.. -.+.+|+++.++|++.||...|..++.= .-++..+..++.+.+..+++.+|..-+++.
T Consensus 72 P~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 72 PERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred hhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3555556667777778754 4567999999999999999999999852 224666677889999999999999999999
Q ss_pred HhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcC
Q 004426 575 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN 654 (754)
Q Consensus 575 l~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg 654 (754)
.+-+|... .....-+.+......+...+| -+-++.++.--|+ +.+....++-|.++|
T Consensus 151 ~e~~pa~r----~pd~~Ll~aR~laa~g~~a~A------------------esafe~a~~~ypg-~~ar~~Y~e~La~qg 207 (251)
T COG4700 151 MEYNPAFR----SPDGHLLFARTLAAQGKYADA------------------ESAFEVAISYYPG-PQARIYYAEMLAKQG 207 (251)
T ss_pred hhcCCccC----CCCchHHHHHHHHhcCCchhH------------------HHHHHHHHHhCCC-HHHHHHHHHHHHHhc
Confidence 99999751 222333333333333333333 3456666666655 345555566666666
Q ss_pred CHHHHHHHHH----HHHhcCCCchhHHHHHHHHHHHcCC
Q 004426 655 CQKAAMRCLR----LARNHSSSEHERLVYEGWILYDTGH 689 (754)
Q Consensus 655 ~~eeAl~~~~----~Al~l~P~~~ea~~~~G~~ly~~G~ 689 (754)
|..||-.-|. ++.+-.|. ..-.++||+-...|+
T Consensus 208 r~~ea~aq~~~v~d~~~r~~~H--~rkh~reW~~~A~~~ 244 (251)
T COG4700 208 RLREANAQYVAVVDTAKRSRPH--YRKHHREWIKTANER 244 (251)
T ss_pred chhHHHHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHH
Confidence 6555544333 23333332 234455665544443
No 202
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.87 E-value=9.8e-05 Score=79.50 Aligned_cols=157 Identities=13% Similarity=0.031 Sum_probs=117.4
Q ss_pred HhhhhhhHhhccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCC-----CHHHH--HHhhhc
Q 004426 422 LHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKP-----TGWMY--QERSLY 494 (754)
Q Consensus 422 l~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~-----~g~ay--~~r~~y 494 (754)
....|.++...|++++|++.+.+. +......-.--++...|+++.|...+.++-....+ ++.+| ...|.
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~- 180 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG- 180 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc-
Confidence 344567788889999888766543 22233333445788999999999999888776654 33333 33332
Q ss_pred CChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCH-HHHHHHHH
Q 004426 495 NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDY-ESALRDTL 572 (754)
Q Consensus 495 ~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~-~~Al~d~~ 572 (754)
....+|.-.|+....-.|..+..++..|.+.+.+|+++||.+.+..|+..+|+ ++.+.++..+...+|+. +.+.+.+.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 12289999999988887889999999999999999999999999999999996 89899999999999999 66777888
Q ss_pred HHHhcCCCcc
Q 004426 573 ALLALESNYM 582 (754)
Q Consensus 573 ~al~l~P~~~ 582 (754)
+.-..+|++.
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 8888999873
No 203
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=5.3e-05 Score=77.12 Aligned_cols=114 Identities=17% Similarity=0.120 Sum_probs=92.3
Q ss_pred ccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 622 DIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 700 (754)
Q Consensus 622 d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~A 700 (754)
+++ |+.+|-+||-++|..+.+|.|++++++++++++-...+.++|+++.|+.+-+++.+|..+.....|++|+....||
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 344 5889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhc----CCChHHHHHHHHHhhccC-CCCCchhHHHHHHH
Q 004426 701 ISI----ERTFEAFFLKAYILADTN-LDPESSTYVIQLLE 735 (754)
Q Consensus 701 i~l----~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 735 (754)
.++ .++|+-=|-++.-.|--- -..+++..+.|.+|
T Consensus 105 ~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 105 YSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 775 344554444444444332 23334444455554
No 204
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.85 E-value=1.5e-05 Score=57.16 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=30.9
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004426 504 LNYASELDPTLSFPYKYRAVAKMEEGQIRAAIS 536 (754)
Q Consensus 504 l~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~ 536 (754)
|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999973
No 205
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.00045 Score=72.41 Aligned_cols=177 Identities=18% Similarity=0.082 Sum_probs=136.4
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCL-ELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~-~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
.+|+..+..-.+-+|.+-....-+|.+|...++|.+|..+|.+.-.+.|...-+ ...+..+.+-+.+.+|++.......
T Consensus 27 ~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 27 ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 788888888888899888899999999999999999999999999999975444 3466778888999999986655433
Q ss_pred cCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCC--CChhHHHhHHHHHHHcC
Q 004426 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP--GKSFLRFRQSLLLLRLN 654 (754)
Q Consensus 577 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P--~~~~~~~~~g~~L~~lg 654 (754)
- |+- +....++.. | -++++-|..++-+.++| -| +.++..++.|-++.+-|
T Consensus 107 ~-~~L-----~~~~lqLqa-----------A-------IkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 107 N-PAL-----HSRVLQLQA-----------A-------IKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEG 158 (459)
T ss_pred C-HHH-----HHHHHHHHH-----------H-------HhcccccCcchHHHHHh----ccCCCccchhccchheeeccc
Confidence 2 221 111222221 2 22333344445555444 35 67888999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 655 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (754)
Q Consensus 655 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~ 702 (754)
.+|+|+.-|+.|++..--++-.-++.+++.|..|+++.|+..-.+.|.
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987766554
No 206
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.83 E-value=1.1e-05 Score=87.02 Aligned_cols=130 Identities=15% Similarity=0.032 Sum_probs=112.2
Q ss_pred CeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhHHH---HHHHHhchhC
Q 004426 226 DKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL---ELLSFANRFC 302 (754)
Q Consensus 226 g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~vl---elL~aA~~f~ 302 (754)
++.+.+|+.+++++|+.|++|+..+..+.....+++ .+.++..++.+..|.|+..-. ...+.+. .+++.+.++.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~--~d~~~~~~~~~~~F~~~~s~~-~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITL--LEEKPEVLEALNGFQVLPSQV-SSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccc--cccchhhHhhhceEEEeccch-HHHHHhhcCChhhhhccccc
Confidence 566999999999999999999998877776677788 889999999999999996544 3344454 8899999999
Q ss_pred hhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhhchHHHHHHHHHHHHh--hhhhhcCchh
Q 004426 303 CEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLR--ELPSSLYNPK 359 (754)
Q Consensus 303 l~~Lk~~Ce~~L~~~i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~--n~~~vl~~e~ 359 (754)
...|+..|...+.+.+. ..++..++..+..+....+...|..++.. ++..+.+..+
T Consensus 186 ~~~lk~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~ 243 (297)
T KOG1987|consen 186 NRHLKLACMPVLLSLIE-TLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLN 243 (297)
T ss_pred cHHHHHHHHHHHHHHHH-hhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHH
Confidence 99999999999999999 79999999999999999999999999987 6666654333
No 207
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=0.037 Score=61.68 Aligned_cols=302 Identities=13% Similarity=0.066 Sum_probs=158.5
Q ss_pred hHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhh-cc--hhh--hhhHHHHHHHhCCHHHHHHHH
Q 004426 400 TTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA-GH--IYS--LAGLARAKYKVGQQYSAYKLI 474 (754)
Q Consensus 400 ~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~-~~--~~a--~~~larv~~~~G~~~~A~~~~ 474 (754)
.+..+.++.+-|+++ ...+...+.--..+|...-|...|++|++. +. ... ....|.--..+..++.|...|
T Consensus 192 raR~IYerfV~~HP~----v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iy 267 (677)
T KOG1915|consen 192 RARSIYERFVLVHPK----VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIY 267 (677)
T ss_pred HHHHHHHHHheeccc----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544432 122333333344566777777788888776 22 111 122233333455566677777
Q ss_pred HHHHHccCCCH-HHHHHh-----hhcCCh---hhHH-----HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 475 NSIISEHKPTG-WMYQER-----SLYNLG---REKI-----VDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDR 540 (754)
Q Consensus 475 ~~aI~~~~~~g-~ay~~r-----~~y~~g---~eAl-----~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~r 540 (754)
.-|+..-|..- .-++.. ..||.. ++++ ..|++-++-+|.+.++|+..--+.-..|+.+.-.+.|.|
T Consensus 268 kyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yEr 347 (677)
T KOG1915|consen 268 KYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYER 347 (677)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 77777766541 111111 233322 3333 359999999999999999988888889999999999999
Q ss_pred HHHcCCC-HHHHHHHH--------HH--HHHcCCHHHHHHHHHHHHhcCCCccccccchhhhH------------HHHHH
Q 004426 541 IIVFKLS-VDCLELRA--------WL--FIAADDYESALRDTLALLALESNYMMFHGRVSGDH------------LVKLL 597 (754)
Q Consensus 541 Al~l~p~-~~~~~~ra--------~~--~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~------------~~~~l 597 (754)
||+--|- .+.-+.+. .+ -+..+|.+-+...|+.+|+|=|.-..-+...=... .+..+
T Consensus 348 AIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiL 427 (677)
T KOG1915|consen 348 AIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKIL 427 (677)
T ss_pred HHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 9987663 22211111 12 35678999999999999999997432221111111 01111
Q ss_pred hhhhccccchh---hhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 004426 598 NHHVRSWSPAD---CWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 674 (754)
Q Consensus 598 ~~~~~~~~~A~---~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 674 (754)
-.+...-.+.. -++.+=..+...|+- -..|++-|+-+|.+-.+|..-|.+-..||+-+.|...|..|+.-..-+.
T Consensus 428 G~AIG~cPK~KlFk~YIelElqL~efDRc--RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm 505 (677)
T KOG1915|consen 428 GNAIGKCPKDKLFKGYIELELQLREFDRC--RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDM 505 (677)
T ss_pred HHHhccCCchhHHHHHHHHHHHHhhHHHH--HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc
Confidence 11111111110 000011111111111 1245555555555555555555555555555555555555555443333
Q ss_pred hHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCh
Q 004426 675 ERLVYEGWILY--DTGHREEALSRAEKSISIERTF 707 (754)
Q Consensus 675 ea~~~~G~~ly--~~G~~eeAl~~~e~Ai~l~~~~ 707 (754)
--+...+-+-+ ..|.++.|-+.|+|-+...+-.
T Consensus 506 pellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 506 PELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV 540 (677)
T ss_pred HHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence 33333333322 2355555555555555554433
No 208
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.80 E-value=7.8e-05 Score=61.45 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS 547 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~ 547 (754)
++|+..|++++..+|++..++..+|.+++++|++++|...+++++..+|+
T Consensus 8 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 8 DEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 56666666666666666666666666666666666666666666666665
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.79 E-value=0.0021 Score=63.48 Aligned_cols=83 Identities=14% Similarity=0.052 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHh-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 498 REKIVDLNYASE-LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS---VDCLELRAWLFIAADDYESALRDTLA 573 (754)
Q Consensus 498 ~eAl~dl~kAi~-LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~---~~~~~~ra~~~~~lgd~~~Al~d~~~ 573 (754)
.||...|.+++. +-.+++.-...++.+....+++.+|...+++..+.+|. |+.....+..+..+|++++|...|+.
T Consensus 106 ~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~ 185 (251)
T COG4700 106 HEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEV 185 (251)
T ss_pred hhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHH
Confidence 555555544432 33344444455555555555555555555555555542 33333444445555555555555555
Q ss_pred HHhcCCC
Q 004426 574 LLALESN 580 (754)
Q Consensus 574 al~l~P~ 580 (754)
++.--|+
T Consensus 186 a~~~ypg 192 (251)
T COG4700 186 AISYYPG 192 (251)
T ss_pred HHHhCCC
Confidence 5555554
No 210
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0039 Score=66.92 Aligned_cols=259 Identities=14% Similarity=0.106 Sum_probs=162.1
Q ss_pred hhccchHHHHHHHHHHhhhcc---hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCH-------HHHHHhhhcCChhh
Q 004426 430 FEREEYKDACYYFEAAADAGH---IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTG-------WMYQERSLYNLGRE 499 (754)
Q Consensus 430 ~~~g~~~eA~~~f~~AL~~~~---~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g-------~ay~~r~~y~~g~e 499 (754)
+...+|..|+...+-+...+. ......+|-+++.+|++++|...|.-+.......+ ..++-.|.| .+
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y---~e 109 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY---IE 109 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH---HH
Confidence 345677777777666555532 23445578899999999999999988877654433 333444444 66
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 500 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALES 579 (754)
Q Consensus 500 Al~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P 579 (754)
|.. +-+-.|+.+--..-+-.+-.++|+-++ +..|..-++- ..+.-...+-++...--|.+||.-|.+++.-+|
T Consensus 110 A~~----~~~ka~k~pL~~RLlfhlahklndEk~-~~~fh~~LqD--~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ 182 (557)
T KOG3785|consen 110 AKS----IAEKAPKTPLCIRLLFHLAHKLNDEKR-ILTFHSSLQD--TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP 182 (557)
T ss_pred HHH----HHhhCCCChHHHHHHHHHHHHhCcHHH-HHHHHHHHhh--hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 643 334456655444444444445555333 3334333321 112223344556666679999999999999999
Q ss_pred CccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHc--CCH
Q 004426 580 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRL--NCQ 656 (754)
Q Consensus 580 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~l--g~~ 656 (754)
+|. +...-. |-|+. .+|-+. |-.++.-=|..-|+++.+.+.++-.+.|+ ||.
T Consensus 183 ey~------alNVy~------------ALCyy-------KlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ 237 (557)
T KOG3785|consen 183 EYI------ALNVYM------------ALCYY-------KLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRT 237 (557)
T ss_pred hhh------hhHHHH------------HHHHH-------hcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccch
Confidence 984 222222 22211 112223 35577777889999999999998888883 332
Q ss_pred HHHH----------------HHH----------HHHHhcCCC----chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 657 KAAM----------------RCL----------RLARNHSSS----EHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (754)
Q Consensus 657 eeAl----------------~~~----------~~Al~l~P~----~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~ 706 (754)
.++. ... +-|++.-|. -+||..|+...++.+|+.+||+..-. .++|.
T Consensus 238 ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~Pt 314 (557)
T KOG3785|consen 238 AEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPT 314 (557)
T ss_pred hHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCC
Confidence 2221 111 123333333 47899999999999999999987644 58999
Q ss_pred hH-HHHHHHHHhhccCCCCCc
Q 004426 707 FE-AFFLKAYILADTNLDPES 726 (754)
Q Consensus 707 ~~-a~~~~~~~~~~~~~~~~~ 726 (754)
.. .|.+||.+.+--.....|
T Consensus 315 tP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCc
Confidence 98 999999998865554443
No 211
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.77 E-value=0.00046 Score=77.10 Aligned_cols=115 Identities=20% Similarity=0.138 Sum_probs=87.3
Q ss_pred ccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhhC
Q 004426 432 REEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELD 511 (754)
Q Consensus 432 ~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~Ld 511 (754)
.+++++|+..|++..+.++. ....+++++...++. .+|+..+++++..+
T Consensus 182 t~~~~~ai~lle~L~~~~pe-v~~~LA~v~l~~~~E------------------------------~~AI~ll~~aL~~~ 230 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE-VAVLLARVYLLMNEE------------------------------VEAIRLLNEALKEN 230 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc-HHHHHHHHHHhcCcH------------------------------HHHHHHHHHHHHhC
Confidence 45677777777665554432 334455555544433 56666777778888
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 512 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLAL 577 (754)
Q Consensus 512 P~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l 577 (754)
|.++..+..-|..+++.++++.|+...++|+.+.|+ ...|+.++.+|..+||+++|+..++.+--.
T Consensus 231 p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 231 PQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 888888888899999999999999999999999996 789999999999999999999877655444
No 212
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.74 E-value=1.8e-05 Score=81.13 Aligned_cols=57 Identities=23% Similarity=0.212 Sum_probs=42.0
Q ss_pred eEEehhhHHHhhcCHHHHHhhcCCCCCC---------CcceEEecCCCCCHHHH-HHHHHHhhcCCCC
Q 004426 227 KEISFVRNKIASLSSPFKAMLYGGFVES---------KRKTIDFSHDGVSVEGL-RAVEVYTRTSRVD 284 (754)
Q Consensus 227 ~~f~aHR~iLaa~S~yF~aMf~~~~~Es---------~~~~I~l~~~~vs~~~f-~~lL~ylYTg~l~ 284 (754)
.+|.|||.|.++||++||.++....+|. .+..|.+++ -|-|..| -.++.++||+.++
T Consensus 261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE-~I~PkafA~i~lhclYTD~lD 327 (401)
T KOG2838|consen 261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDE-LIFPKAFAPIFLHCLYTDRLD 327 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechh-hhcchhhhhhhhhhheecccc
Confidence 3799999999999999999986543332 334677753 3445554 4678999999987
No 213
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.74 E-value=0.042 Score=61.30 Aligned_cols=235 Identities=11% Similarity=0.052 Sum_probs=159.6
Q ss_pred HHHHHhhhcch--hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHH-HH--------HHhhhcC-----ChhhHHHHH
Q 004426 441 YFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGW-MY--------QERSLYN-----LGREKIVDL 504 (754)
Q Consensus 441 ~f~~AL~~~~~--~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~-ay--------~~r~~y~-----~g~eAl~dl 504 (754)
.|+.-+..++. ++|...-++....|+.+.-.+.|.+||..-|+... -| .+-.+|. ..+-+-..|
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 35566666543 57888888888899999999999999998886321 11 1112221 113455578
Q ss_pred HHHHhhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 505 NYASELDPTL----SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESN 580 (754)
Q Consensus 505 ~kAi~LdP~~----~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~ 580 (754)
..+++|=|.- +..|.--|.-..++.+...|-..+-.||..-|....+-.---+-.+++.+|.....|++-|+..|.
T Consensus 390 q~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe 469 (677)
T KOG1915|consen 390 QACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE 469 (677)
T ss_pred HHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH
Confidence 8999998854 455666677777889999999999999999997664433334678899999999999999999998
Q ss_pred ccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHH--HHcCCHH
Q 004426 581 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLL--LRLNCQK 657 (754)
Q Consensus 581 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L--~~lg~~e 657 (754)
+ ..+|++..+-..+++|.+ |-+.|+-|+.-..-+.--..-++.+- ...|.++
T Consensus 470 ~-------------------------c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e 524 (677)
T KOG1915|consen 470 N-------------------------CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE 524 (677)
T ss_pred h-------------------------hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence 7 233444443333333333 45666666654322222122222221 2379999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHc-------C-----------CHHHHHHHHHHHHhc
Q 004426 658 AAMRCLRLARNHSSSEHERLVYEGWILYDT-------G-----------HREEALSRAEKSISI 703 (754)
Q Consensus 658 eAl~~~~~Al~l~P~~~ea~~~~G~~ly~~-------G-----------~~eeAl~~~e~Ai~l 703 (754)
.|...|++.|+..+... +....+.+.+ | ....|-..|++|...
T Consensus 525 kaR~LYerlL~rt~h~k---vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 525 KARALYERLLDRTQHVK---VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred HHHHHHHHHHHhcccch---HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 99999999999998866 5666666655 3 566777888888764
No 214
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.71 E-value=4.3e-05 Score=67.95 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=68.9
Q ss_pred EEEEECCeEEehhhHHHh-hcCHHHHHhhcCC---CCCCCcceEEecCCCCCHHHHHHHHHHhhc-CCCCCCChhHHHHH
Q 004426 220 VTFCVRDKEISFVRNKIA-SLSSPFKAMLYGG---FVESKRKTIDFSHDGVSVEGLRAVEVYTRT-SRVDLFCPGIVLEL 294 (754)
Q Consensus 220 V~f~V~g~~f~aHR~iLa-a~S~yF~aMf~~~---~~Es~~~~I~l~~~~vs~~~f~~lL~ylYT-g~l~~i~~~~vlel 294 (754)
|+|.|||+.|..-+..|. ....+|..|+.+. .......++-| |-+|..|+.||+|+.+ +.+...+...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi---DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI---DRDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE---SS-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe---ccChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 5567999999864 34445568878 6799999999999999 66663235678899
Q ss_pred HHHhchhChhhH-HHHH
Q 004426 295 LSFANRFCCEEM-KSAC 310 (754)
Q Consensus 295 L~aA~~f~l~~L-k~~C 310 (754)
+.-|++|+++.+ .+.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999998 7666
No 215
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.70 E-value=0.12 Score=56.58 Aligned_cols=287 Identities=18% Similarity=0.113 Sum_probs=193.3
Q ss_pred hhhhhHhhccchHHHHHHHHHHhhh---cchh-hhhhHHHHHHHhCCHHHHHHHHHHHHHccC----CCHHHHHHhhhcC
Q 004426 424 QLGCVMFEREEYKDACYYFEAAADA---GHIY-SLAGLARAKYKVGQQYSAYKLINSIISEHK----PTGWMYQERSLYN 495 (754)
Q Consensus 424 ~LG~v~~~~g~~~eA~~~f~~AL~~---~~~~-a~~~larv~~~~G~~~~A~~~~~~aI~~~~----~~g~ay~~r~~y~ 495 (754)
..|.+-...|+-..|.+.-.++-++ +... .+..-+..-..-|+++.|..-|+.++..-. .+-..|..-...+
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~G 168 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcc
Confidence 4577777778887777766655433 2222 222234456678999999999987765321 1111222222223
Q ss_pred ChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHH-HHHHHH------HHHcCCHHHH
Q 004426 496 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCL-ELRAWL------FIAADDYESA 567 (754)
Q Consensus 496 ~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~-~~ra~~------~~~lgd~~~A 567 (754)
..+-|...-.+|-+..|....++...-..+...|++++|+.-.+...+-.- ..... ..|+.+ -.---|...|
T Consensus 169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 169 AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 336677778899999999999999999999999999999998887765543 12211 123322 2334578899
Q ss_pred HHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhH
Q 004426 568 LRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQ 646 (754)
Q Consensus 568 l~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~ 646 (754)
..+-..+++|.|++.++.--.+ .....- ++.+ +-.+++.+...+|.-..+.
T Consensus 249 r~~A~~a~KL~pdlvPaav~AA------ralf~d-------------------~~~rKg~~ilE~aWK~ePHP~ia~--- 300 (531)
T COG3898 249 RDDALEANKLAPDLVPAAVVAA------RALFRD-------------------GNLRKGSKILETAWKAEPHPDIAL--- 300 (531)
T ss_pred HHHHHHHhhcCCccchHHHHHH------HHHHhc-------------------cchhhhhhHHHHHHhcCCChHHHH---
Confidence 9999999999999964211111 011111 2222 2457999999999754332
Q ss_pred HHHHHHcCCHHHHHHHHHHHH---hcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhccCCC
Q 004426 647 SLLLLRLNCQKAAMRCLRLAR---NHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLD 723 (754)
Q Consensus 647 g~~L~~lg~~eeAl~~~~~Al---~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~~~~~ 723 (754)
.++..+-| +-++.-+++|- .+.|+|.+........-++-|+|-.|-...|.++.+.|---+|.|.|-.=+--.=|
T Consensus 301 lY~~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGD 378 (531)
T COG3898 301 LYVRARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGD 378 (531)
T ss_pred HHHHhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCc
Confidence 23334444 34555555554 56899999999999999999999999999999999999988999887654432223
Q ss_pred CCchhHHHHHHHHHhcCCCC
Q 004426 724 PESSTYVIQLLEEALRCPSD 743 (754)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~ 743 (754)
--.|-+.|-.|+|-|-|
T Consensus 379 ---qg~vR~wlAqav~APrd 395 (531)
T COG3898 379 ---QGKVRQWLAQAVKAPRD 395 (531)
T ss_pred ---hHHHHHHHHHHhcCCCC
Confidence 45799999999999977
No 216
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.69 E-value=0.00073 Score=70.72 Aligned_cols=109 Identities=17% Similarity=0.034 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHH
Q 004426 551 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVIN 630 (754)
Q Consensus 551 ~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~ 630 (754)
+|+.+.-++..|||++|..-|+.=+.--|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s------------------------------------------------- 174 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS------------------------------------------------- 174 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------------------------------------------
Confidence 6777888899999999999999999999985
Q ss_pred HHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004426 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (754)
Q Consensus 631 ~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~ 707 (754)
+--+.++|.+|.++..+|++++|...|..+.+-.|++ +|+++.+|.++.++|+-|+|-..|++.|+-=|..
T Consensus 175 ------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 175 ------TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred ------cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 3346789999999999999999999999999988875 6899999999999999999999999999999988
Q ss_pred HHHHHHH
Q 004426 708 EAFFLKA 714 (754)
Q Consensus 708 ~a~~~~~ 714 (754)
++=-+.-
T Consensus 249 ~aA~~Ak 255 (262)
T COG1729 249 DAAKLAK 255 (262)
T ss_pred HHHHHHH
Confidence 8544433
No 217
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0004 Score=71.09 Aligned_cols=118 Identities=19% Similarity=0.165 Sum_probs=71.7
Q ss_pred HHHhhhhhhHhhccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHH-HccCCCHHHHHHhhhcCChh
Q 004426 420 LALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSII-SEHKPTGWMYQERSLYNLGR 498 (754)
Q Consensus 420 ~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI-~~~~~~g~ay~~r~~y~~g~ 498 (754)
.++++.|+-++..|+|.||...|..||..-.+ + ....+-|..+ +..+.+.| .+.-|....+..-+.| .
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~-----L-~lkEkP~e~e--W~eLdk~~tpLllNy~QC~L~~~e~---y 247 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRN-----L-QLKEKPGEPE--WLELDKMITPLLLNYCQCLLKKEEY---Y 247 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHH-----H-HhccCCCChH--HHHHHHhhhHHHHhHHHHHhhHHHH---H
Confidence 35788999999999999999999988764110 0 0011122222 22223222 2333444555555444 6
Q ss_pred hHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH
Q 004426 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV 548 (754)
Q Consensus 499 eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~ 548 (754)
++++..+.++..+|++..||+.||-+...-=+.+||-+||.++|+++|..
T Consensus 248 evleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 248 EVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 66666666677777777777777776666666666777777777666653
No 218
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.68 E-value=6.7e-05 Score=53.33 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004426 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (754)
Q Consensus 674 ~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~ 707 (754)
+++++++|.+++.+|++++|+..|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3566777777777777777777777777777764
No 219
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.65 E-value=0.032 Score=64.26 Aligned_cols=430 Identities=12% Similarity=0.056 Sum_probs=250.2
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHhchhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhhchH-HHHHH
Q 004426 264 DGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERAT-LLVAS 342 (754)
Q Consensus 264 ~~vs~~~f~~lL~ylYTg~l~~i~~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~~~n~l~il~~A~~~~~~-~L~~~ 342 (754)
.+..++++--=....||+++. .=..++|++|-=.++.+.|.+...+.|. +++.+-+|+.-|+.. ...+.
T Consensus 228 ~slnvdaiiR~gi~rftDq~g-------~Lw~SLAdYYIr~g~~ekarDvyeeai~---~v~tvrDFt~ifd~Ya~FEE~ 297 (835)
T KOG2047|consen 228 QSLNVDAIIRGGIRRFTDQLG-------FLWCSLADYYIRSGLFEKARDVYEEAIQ---TVMTVRDFTQIFDAYAQFEES 297 (835)
T ss_pred cccCHHHHHHhhcccCcHHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHHH---hheehhhHHHHHHHHHHHHHH
Confidence 456666655444555665544 3457899999989999999888877554 566677777777654 45778
Q ss_pred HHHHHHhhhhh-hcCchhh-hhhccCchhhHHHHhcccchhHHHHHHHHHHhhhhc---------------chhhHHHHH
Q 004426 343 CLQVLLRELPS-SLYNPKV-MKIFCSSEATERLANVGHASFLLYYFLSQVAMEKDR---------------VSNTTVMLL 405 (754)
Q Consensus 343 cl~~i~~n~~~-vl~~e~f-~~Ll~~~~~~~~l~~v~~~~~~~~a~LswV~~d~~~---------------r~~~~v~LL 405 (754)
|..++.. +.+ -..+++. .++ .-++....+-....-..+..|....+. .....+...
T Consensus 298 ~~~~~me-~a~~~~~n~ed~~dl------~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~ty 370 (835)
T KOG2047|consen 298 CVAAKME-LADEESGNEEDDVDL------ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTY 370 (835)
T ss_pred HHHHHHh-hhhhcccChhhhhhH------HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHH
Confidence 8888877 211 1111110 011 000100000000001112222111110 011222333
Q ss_pred HHhhh-chhh-hHH-HHHHHhhhhhhHhhccchHHHHHHHHHHhhhcch------hhhhhHHHHHHHhCCHHHHHHHHHH
Q 004426 406 ERLGE-CSTE-RWQ-RMLALHQLGCVMFEREEYKDACYYFEAAADAGHI------YSLAGLARAKYKVGQQYSAYKLINS 476 (754)
Q Consensus 406 er~vr-~~~~-~~q-ka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~------~a~~~larv~~~~G~~~~A~~~~~~ 476 (754)
..+++ ..+. ... ....+...|..|-..|+++.|...|++|.+.+.. ..|..-|..-....+++.|...+.+
T Consensus 371 teAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~ 450 (835)
T KOG2047|consen 371 TEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR 450 (835)
T ss_pred HHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 33332 1111 000 1134667788899999999999999999988432 2344445555666778888888887
Q ss_pred HHHccCC----------CHHHHHHhh-----hcC-------ChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Q 004426 477 IISEHKP----------TGWMYQERS-----LYN-------LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAA 534 (754)
Q Consensus 477 aI~~~~~----------~g~ay~~r~-----~y~-------~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eA 534 (754)
|...-.+ -..+-..++ .|. ..+.--+.|+++|.|.=--++.-.|-|..+.+-.-+++|
T Consensus 451 A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfees 530 (835)
T KOG2047|consen 451 ATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEES 530 (835)
T ss_pred hhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHH
Confidence 7543111 112222222 232 224455679999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC--C-HHHHHH---HHHHHHHcCCHHHHHHHHHHHHhcCCCc-cc--cccchhhhHHHHHHhhhhcccc
Q 004426 535 ISEIDRIIVFKL--S-VDCLEL---RAWLFIAADDYESALRDTLALLALESNY-MM--FHGRVSGDHLVKLLNHHVRSWS 605 (754)
Q Consensus 535 l~~~~rAl~l~p--~-~~~~~~---ra~~~~~lgd~~~Al~d~~~al~l~P~~-~~--~~~~~~~~~~~~~l~~~~~~~~ 605 (754)
...|.|-|.|=+ + .+.|.. ...-.+..-..+-|...|++|++..|.- .. |.--.-....-|+.++...-++
T Consensus 531 Fk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiye 610 (835)
T KOG2047|consen 531 FKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYE 610 (835)
T ss_pred HHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999843 4 455532 2233455567899999999999999832 11 1111112222233333333322
Q ss_pred chhhhhhhhhccccc--------cccc---hHHHHHHHHHcCCCCh--hHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 606 PADCWIKLYDRWSSV--------DDIG---SLAVINQMLINDPGKS--FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS 672 (754)
Q Consensus 606 ~A~~~~~l~~~~~~~--------~d~~---al~~~~~aL~l~P~~~--~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~ 672 (754)
.|.--+...+++.-+ .-+| --.+|++||+.=|.+- +...+-|..-.++|....|..+|.-.-++-|-
T Consensus 611 rat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 611 RATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 221111111111000 1111 2338899999877653 34566777788899999999999888887766
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 004426 673 EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFL 712 (754)
Q Consensus 673 ~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~ 712 (754)
....-+.-.|--+...|=.| .-|+.-++|.+|.+|=|+
T Consensus 691 r~~~~fW~twk~FEvrHGne--dT~keMLRikRsvqa~yn 728 (835)
T KOG2047|consen 691 RVTTEFWDTWKEFEVRHGNE--DTYKEMLRIKRSVQATYN 728 (835)
T ss_pred cCChHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHhhh
Confidence 66666777777666533333 357888888888886554
No 220
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=97.64 E-value=9.3e-05 Score=65.70 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=63.6
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCchhhhhh--------ccCchhhHHHHhcccchhHHHHHHHHHHhhhh
Q 004426 324 ALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI--------FCSSEATERLANVGHASFLLYYFLSQVAMEKD 395 (754)
Q Consensus 324 ~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~e~f~~L--------l~~~~~~~~l~~v~~~~~~~~a~LswV~~d~~ 395 (754)
|+.++.+|..|+++.|.+.|.+||.+||..+.++++|.+| +.+++. .+..+..++.+++.|+.++..
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l-----~v~~E~~v~~av~~W~~~~~~ 75 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDL-----NVPSEEEVFEAVLRWVKHDPE 75 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccC-----CCCCHHHHHHHHHHHHHCCHH
Confidence 5788999999999999999999999999999999999876 222222 244577889999999998875
Q ss_pred cchhhHHHHHHHhhhchh
Q 004426 396 RVSNTTVMLLERLGECST 413 (754)
Q Consensus 396 ~r~~~~v~LLer~vr~~~ 413 (754)
.+. ....+++. +|++.
T Consensus 76 ~~~-~~~~ll~~-ir~~~ 91 (101)
T smart00875 76 RRR-HLPELLSH-VRFPL 91 (101)
T ss_pred HHH-HHHHHHHh-CCCCC
Confidence 433 55556655 45543
No 221
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.00097 Score=69.83 Aligned_cols=106 Identities=14% Similarity=0.036 Sum_probs=97.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHH
Q 004426 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 593 (754)
Q Consensus 518 y~~rg~~l~~lg~~~eAl~~~~rAl~l~p~----~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~ 593 (754)
.++-|.-+...|+|.+|...|..=|.--|+ +.++|++|.+++.+|+|++|...|..+.+-.|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s------------ 211 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS------------ 211 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC------------
Confidence 788888999999999999999999999995 5778999999999999999999999999999975
Q ss_pred HHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (754)
Q Consensus 594 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 673 (754)
|+-+++.+-+|.++.++|..++|-+.+++.+.--|+.
T Consensus 212 -------------------------------------------~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 212 -------------------------------------------PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred -------------------------------------------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 7779999999999999999999999999999999997
Q ss_pred hhHHH
Q 004426 674 HERLV 678 (754)
Q Consensus 674 ~ea~~ 678 (754)
.-|..
T Consensus 249 ~aA~~ 253 (262)
T COG1729 249 DAAKL 253 (262)
T ss_pred HHHHH
Confidence 76543
No 222
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.59 E-value=0.0015 Score=62.39 Aligned_cols=106 Identities=12% Similarity=0.026 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHH
Q 004426 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (754)
Q Consensus 548 ~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 627 (754)
+..++..|.-.++.|+|++|+.-|+.+.+.-|-.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g---------------------------------------------- 43 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG---------------------------------------------- 43 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----------------------------------------------
Confidence 6778889999999999999999999999999953
Q ss_pred HHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHcCC---------------
Q 004426 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGH--------------- 689 (754)
Q Consensus 628 ~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~ly~~G~--------------- 689 (754)
|-...+...+|.++.+.|++++|+..+++=++++|++ ..|++-+|++.+.+++
T Consensus 44 ---------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~ 114 (142)
T PF13512_consen 44 ---------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTP 114 (142)
T ss_pred ---------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHH
Confidence 2223445668889999999999999999999999987 4678999999999887
Q ss_pred HHHHHHHHHHHHhcCCChH
Q 004426 690 REEALSRAEKSISIERTFE 708 (754)
Q Consensus 690 ~eeAl~~~e~Ai~l~~~~~ 708 (754)
..+|+..+++-|..=|+.+
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 8899999999998888765
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.54 E-value=0.00015 Score=54.97 Aligned_cols=43 Identities=19% Similarity=0.017 Sum_probs=39.0
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 004426 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW 682 (754)
Q Consensus 640 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~ 682 (754)
+++++.+|.++..+|++++|++.|+++++.+|+|++++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4678899999999999999999999999999999999988874
No 224
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.49 E-value=0.00019 Score=50.91 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004426 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS 547 (754)
Q Consensus 516 ~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~ 547 (754)
.+|+++|.++..+|++++|+..|++||+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45555555555555555555555555555553
No 225
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.44 E-value=0.00015 Score=77.53 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=79.5
Q ss_pred HHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc----CChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004426 461 KYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAIS 536 (754)
Q Consensus 461 ~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y----~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~ 536 (754)
.+..|.++.|++.+.++|.+.|+++.+|..|+.. .....|+.|++.|+++||+.+..|..||.+...+|++.+|-.
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 4567889999999999999999999999999642 233789999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHH
Q 004426 537 EIDRIIVFKLSVD 549 (754)
Q Consensus 537 ~~~rAl~l~p~~~ 549 (754)
++..|.+++-+..
T Consensus 204 dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 204 DLALACKLDYDEA 216 (377)
T ss_pred HHHHHHhccccHH
Confidence 9999999876543
No 226
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.36 E-value=0.00028 Score=49.78 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 674 HERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (754)
Q Consensus 674 ~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~ 706 (754)
+++++++|.+++.+|++++|+..|++|++++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 356666777777777777777777777777665
No 227
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0012 Score=70.38 Aligned_cols=76 Identities=21% Similarity=0.113 Sum_probs=64.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccch
Q 004426 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK---LS--VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 588 (754)
Q Consensus 514 ~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~---p~--~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~ 588 (754)
.+.-|..=|+=|+..++|..|+..|.+.|+-+ |+ .-+|.||+.+...+|+|-.||.|+.+|+.++|.+..++.|+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 35677888999999999999999999999984 44 34567899999999999999999999999999986555554
Q ss_pred h
Q 004426 589 S 589 (754)
Q Consensus 589 ~ 589 (754)
+
T Consensus 160 A 160 (390)
T KOG0551|consen 160 A 160 (390)
T ss_pred h
Confidence 4
No 228
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0021 Score=65.91 Aligned_cols=117 Identities=16% Similarity=0.076 Sum_probs=95.7
Q ss_pred hhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Q 004426 453 SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIR 532 (754)
Q Consensus 453 a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~ 532 (754)
++.+-|+-++..|++.+|...|..||..-.++ +-+ -..|+ ...++||......+.|...++..-|+|-
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L----~lk--EkP~e------~eW~eLdk~~tpLllNy~QC~L~~~e~y 247 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNL----QLK--EKPGE------PEWLELDKMITPLLLNYCQCLLKKEEYY 247 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHH----Hhc--cCCCC------hHHHHHHHhhhHHHHhHHHHHhhHHHHH
Confidence 45567778999999999999999887653210 000 01112 2356777777889999999999999999
Q ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 533 AAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 533 eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
++++..+.+|...|. ..+++.||-++...=+.++|.+||.++|+++|..
T Consensus 248 evleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 248 EVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 999999999999995 7889999999999999999999999999999975
No 229
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.01 Score=61.59 Aligned_cols=139 Identities=12% Similarity=0.041 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHH
Q 004426 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 593 (754)
Q Consensus 516 ~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p--~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~ 593 (754)
...+....++..+|.|.=.+..++++|+.+| +|......+.+-.+-||.+.|...|+++-+-+-.--
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~----------- 246 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD----------- 246 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh-----------
Confidence 3556678889999999999999999999986 366667788889999999999999987664332210
Q ss_pred HHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (754)
Q Consensus 594 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 673 (754)
.--++.-.+-|.+.++.-.|++.+|.+.|.+.++.+|.+
T Consensus 247 -----------------------------------------~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~ 285 (366)
T KOG2796|consen 247 -----------------------------------------GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN 285 (366)
T ss_pred -----------------------------------------ccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCc
Confidence 001111123334445555555555666666666666666
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 674 HERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (754)
Q Consensus 674 ~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~ 706 (754)
+-+.+|.++|+.++|+.-.|+...|.+..+.|.
T Consensus 286 ~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 286 AVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 666666666666666666666666666555554
No 230
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.24 E-value=0.0011 Score=58.07 Aligned_cols=81 Identities=30% Similarity=0.350 Sum_probs=64.0
Q ss_pred EEEEE-CCeEEehhhHHHhhcCHHHHHhhcCCCCC--CCcceEEecCCCCCHHHHHHHHHHh-----hcCC-CC--C--C
Q 004426 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVE--SKRKTIDFSHDGVSVEGLRAVEVYT-----RTSR-VD--L--F 286 (754)
Q Consensus 220 V~f~V-~g~~f~aHR~iLaa~S~yF~aMf~~~~~E--s~~~~I~l~~~~vs~~~f~~lL~yl-----YTg~-l~--~--i 286 (754)
|+++- +|++|-..|- +|.-|+-.|+||+|.+.+ ...++|.+ .++...+++.+-+|+ ||+. .+ . |
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f--~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~I 95 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYF--RDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDI 95 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEe--ccchHHHHHHHHHHhhheeeeccccccCCCCCC
Confidence 88876 4566666664 467799999999987655 45569999 899999999999997 6665 21 1 8
Q ss_pred ChhHHHHHHHHhchhCh
Q 004426 287 CPGIVLELLSFANRFCC 303 (754)
Q Consensus 287 ~~~~vlelL~aA~~f~l 303 (754)
+++.++|||.+||++.+
T Consensus 96 ppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 96 PPEMALELLMAANYLEC 112 (112)
T ss_pred CHHHHHHHHHHhhhhcC
Confidence 89999999999998753
No 231
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.20 E-value=0.00063 Score=47.96 Aligned_cols=34 Identities=9% Similarity=0.045 Sum_probs=31.3
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (754)
Q Consensus 640 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 673 (754)
+.+|+.+|.++..+|++++|++.+++|++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999986
No 232
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.028 Score=58.45 Aligned_cols=166 Identities=15% Similarity=0.093 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHccCCCHHHHHHhhhcCC-----hhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH-HHHHHHHHH
Q 004426 468 YSAYKLINSIISEHKPTGWMYQERSLYNL-----GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIR-AAISEIDRI 541 (754)
Q Consensus 468 ~~A~~~~~~aI~~~~~~g~ay~~r~~y~~-----g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~-eAl~~~~rA 541 (754)
..|......+|..+|.+-.+++-|..... -.+-++-++.+++-+|.+.+.|..|-.+.-.+|++. .-++-..++
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM 139 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 45777788888888877777766643221 145566778888888888888888888888888777 777788888
Q ss_pred HHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccc
Q 004426 542 IVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSV 620 (754)
Q Consensus 542 l~l~p-~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~ 620 (754)
|..+. ++.+|..|-|+....++|+.=++.....|+.|--+ =.+|.+.|-.+...
T Consensus 140 l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N-------------------------NSAWN~Ryfvi~~~ 194 (318)
T KOG0530|consen 140 LDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN-------------------------NSAWNQRYFVITNT 194 (318)
T ss_pred HhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-------------------------cchhheeeEEEEec
Confidence 88777 47888888888888888888888888888777533 13577777776665
Q ss_pred cccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 004426 621 DDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILY 685 (754)
Q Consensus 621 ~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly 685 (754)
.+.-.-+.+ +.=+...-..+.+.|+|-.|..|+.=++-
T Consensus 195 ~~~~~~~~l---------------------------e~El~yt~~~I~~vP~NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 195 KGVISKAEL---------------------------ERELNYTKDKILLVPNNESAWNYLKGLLE 232 (318)
T ss_pred cCCccHHHH---------------------------HHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 444221111 12233445667777777777777655554
No 233
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.14 E-value=0.037 Score=57.72 Aligned_cols=189 Identities=14% Similarity=0.110 Sum_probs=138.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchh
Q 004426 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (754)
Q Consensus 514 ~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~----~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~ 589 (754)
-+.-+++-|...++.|++++|+..|+++....|. ..+....+.++.+.|++++|+...++=+.+.|++.. -.=
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n---~dY 109 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN---ADY 109 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC---hhH
Confidence 3567788899999999999999999999999883 355667888999999999999999999999998631 111
Q ss_pred hhHHHHHHhhhhccccchhhhhhhhhccccccccc----hHHHHHHHHHcCCCChhH-----------------HHhHHH
Q 004426 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG----SLAVINQMLINDPGKSFL-----------------RFRQSL 648 (754)
Q Consensus 590 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~----al~~~~~aL~l~P~~~~~-----------------~~~~g~ 648 (754)
+..++++. .....+... .|.. |...+...|..-|++.-+ -...|.
T Consensus 110 ~~YlkgLs--~~~~i~~~~------------rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iar 175 (254)
T COG4105 110 AYYLKGLS--YFFQIDDVT------------RDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIAR 175 (254)
T ss_pred HHHHHHHH--HhccCCccc------------cCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433 111111110 1111 455788888888887543 224566
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhcc
Q 004426 649 LLLRLNCQKAAMRCLRLARNHSSS---EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADT 720 (754)
Q Consensus 649 ~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~~ 720 (754)
.+.+-|.+.+|..-++..++--|+ -.+++..+..+++.+|-.++|= ..++.|..+...-.|+.-+|.+...
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~-~~~~vl~~N~p~s~~~~~~~~~~~~ 249 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAK-KTAKVLGANYPDSQWYKDAYRLLQR 249 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHH-HHHHHHHhcCCCCcchhhhhhcccc
Confidence 777889999999999999988665 4688999999999999999996 7888888866655677777666543
No 234
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.11 Score=54.18 Aligned_cols=143 Identities=9% Similarity=0.052 Sum_probs=102.4
Q ss_pred hhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcchh--hhhhHHHHHHHhC-CHHHHHHHHHHHHHccCCCHHHHH
Q 004426 413 TERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIY--SLAGLARAKYKVG-QQYSAYKLINSIISEHKPTGWMYQ 489 (754)
Q Consensus 413 ~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~--a~~~larv~~~~G-~~~~A~~~~~~aI~~~~~~g~ay~ 489 (754)
.+..+...+|+. .++....+-..|...-..+|.++++. .|.++-.++..++ +..+-...++.+|+..|++-..+.
T Consensus 39 te~fr~~m~YfR--AI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWH 116 (318)
T KOG0530|consen 39 TEDFRDVMDYFR--AIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWH 116 (318)
T ss_pred chhHHHHHHHHH--HHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHH
Confidence 333344455543 22333334467888878888887653 3555444444444 455567888899999999999988
Q ss_pred Hhhhc----CChh-hHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHH
Q 004426 490 ERSLY----NLGR-EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWL 557 (754)
Q Consensus 490 ~r~~y----~~g~-eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~~~ra~~ 557 (754)
.|... +... .-++-...++..|..+..+|.+|-=+....+.++.-++..++.|+.+- +..+|..|..+
T Consensus 117 HRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfv 190 (318)
T KOG0530|consen 117 HRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFV 190 (318)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEE
Confidence 88532 2222 456778899999999999999999999999999999999999999888 56777767653
No 235
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.07 E-value=0.48 Score=52.10 Aligned_cols=245 Identities=15% Similarity=0.071 Sum_probs=168.7
Q ss_pred hHhhccchHHHHHHHHHHhhhcchhhhhhHHHH---HHHhCCHHHHHHHHHHHHHccCCCHHHHHHh----hhcCChhhH
Q 004426 428 VMFEREEYKDACYYFEAAADAGHIYSLAGLARA---KYKVGQQYSAYKLINSIISEHKPTGWMYQER----SLYNLGREK 500 (754)
Q Consensus 428 v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv---~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r----~~y~~g~eA 500 (754)
.-..-|+|++|.+-|+..+.-+. .-..|+-.+ -..+|.++.|...-.++-+..|.+.|+.... ..-+.-++|
T Consensus 129 aal~eG~~~~Ar~kfeAMl~dPE-tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 129 AALLEGDYEDARKKFEAMLDDPE-TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred HHHhcCchHHHHHHHHHHhcChH-HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHH
Confidence 34556899999999987666433 333333333 3468889989999999999999988887443 333344777
Q ss_pred HHHHHHH---HhhCCCChHHHHHHHHHHHH------cCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 004426 501 IVDLNYA---SELDPTLSFPYKYRAVAKME------EGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRD 570 (754)
Q Consensus 501 l~dl~kA---i~LdP~~~~ay~~rg~~l~~------lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d 570 (754)
+.-.+.. ..+.|+-+ -..|+.++.. .-+...|..+-..+++|+|+ ......-+.++++.|+..++-.-
T Consensus 208 lkLvd~~~~~~vie~~~a--eR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVA--ERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhH--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhH
Confidence 7654432 23344332 2334433322 23478899999999999998 46566677788999999999999
Q ss_pred HHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHH
Q 004426 571 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLL 649 (754)
Q Consensus 571 ~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~ 649 (754)
++.+.+.+|.-. . | .+|....+-|-.. -+.-..+--++-|++.+..+..+..
T Consensus 286 lE~aWK~ePHP~-------i----------------a----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~a 338 (531)
T COG3898 286 LETAWKAEPHPD-------I----------------A----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEA 338 (531)
T ss_pred HHHHHhcCCChH-------H----------------H----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 999999999631 0 1 2222222221110 1223344567789999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH-HHHcCCHHHHHHHHHHHHhc
Q 004426 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI-LYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 650 L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~-ly~~G~~eeAl~~~e~Ai~l 703 (754)
-+.-|.+-.|..-.+.+.+..|... ++.-++-| --.+|+-.+.-+..-|+++-
T Consensus 339 Alda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 339 ALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9999999999999999999999966 44444444 34569999999999998874
No 236
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.07 E-value=0.25 Score=58.17 Aligned_cols=264 Identities=14% Similarity=0.043 Sum_probs=172.5
Q ss_pred HHHHhhhhhhHhh-----ccchHHHHHHHHHHhh-------hcchhhhhhHHHHHHHhC-----CHHHHHHHHHHHHHcc
Q 004426 419 MLALHQLGCVMFE-----REEYKDACYYFEAAAD-------AGHIYSLAGLARAKYKVG-----QQYSAYKLINSIISEH 481 (754)
Q Consensus 419 a~Al~~LG~v~~~-----~g~~~eA~~~f~~AL~-------~~~~~a~~~larv~~~~G-----~~~~A~~~~~~aI~~~ 481 (754)
..+.+.+|.++.. .++.+.|+.+|..|.+ .+...+..++|++|.... +...|...+.++....
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC
Confidence 3455556655443 3678999999998877 456678889999888754 5666888888888877
Q ss_pred CCCHHHHHHhhh-cCC----hhhHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCHHHHH
Q 004426 482 KPTGWMYQERSL-YNL----GREKIVDLNYASELDPTLSFPYKYRAVAKME----EGQIRAAISEIDRIIVFKLSVDCLE 552 (754)
Q Consensus 482 ~~~g~ay~~r~~-y~~----g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~----lg~~~eAl~~~~rAl~l~p~~~~~~ 552 (754)
.+.+..+..... .+. ...|...|..|.. -.+..+++++|.++.. ..+...|...|.+|.+.. ++.+.+
T Consensus 324 ~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~ 400 (552)
T KOG1550|consen 324 NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAY 400 (552)
T ss_pred CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHH
Confidence 665555443321 111 1578888877775 4678889999988876 357889999999999887 555555
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHH
Q 004426 553 LRAWLFI-AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQ 631 (754)
Q Consensus 553 ~ra~~~~-~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~ 631 (754)
.++.++. ..++++.+..-+....++.-.... ..+..+.. ... ..+.......+...+...+.+
T Consensus 401 ~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q----~~a~~l~~----~~~--------~~~~~~~~~~~~~~~~~~~~~ 464 (552)
T KOG1550|consen 401 LLGAFYEYGVGRYDTALALYLYLAELGYEVAQ----SNAAYLLD----QSE--------EDLFSRGVISTLERAFSLYSR 464 (552)
T ss_pred HHHHHHHHccccccHHHHHHHHHHHhhhhHHh----hHHHHHHH----hcc--------ccccccccccchhHHHHHHHH
Confidence 5554322 228888888877777766544310 11111110 000 001111000122212333443
Q ss_pred HHHcCCCChhHHHhHHHHHHHc----CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHc----CCHHHHHHHHHHHHhc
Q 004426 632 MLINDPGKSFLRFRQSLLLLRL----NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT----GHREEALSRAEKSISI 703 (754)
Q Consensus 632 aL~l~P~~~~~~~~~g~~L~~l----g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~----G~~eeAl~~~e~Ai~l 703 (754)
+ ..++++.+.+.+|.++..- ..++-|...|.+|-.-. +.+.+|+|+++-.- + +..|...|.+|.+-
T Consensus 465 a--~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 465 A--AAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEE 538 (552)
T ss_pred H--HhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhc
Confidence 3 3467888888888888774 45889999999998888 99999999987643 4 78899999998876
Q ss_pred CCCh
Q 004426 704 ERTF 707 (754)
Q Consensus 704 ~~~~ 707 (754)
+...
T Consensus 539 ~~~~ 542 (552)
T KOG1550|consen 539 DSRA 542 (552)
T ss_pred Cchh
Confidence 5543
No 237
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.05 E-value=0.00069 Score=69.79 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=51.9
Q ss_pred EEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCc--ceEEecCCCCCHHHHHHHHHHhhcCCCC
Q 004426 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKR--KTIDFSHDGVSVEGLRAVEVYTRTSRVD 284 (754)
Q Consensus 220 V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~--~~I~l~~~~vs~~~f~~lL~ylYTg~l~ 284 (754)
|-++.....|++||++|++||++|+.+.+++-.-... ..|.+ -+++.++|..+|+|+|||+..
T Consensus 133 ldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~--ag~dm~~feafLh~l~tgEfg 197 (401)
T KOG2838|consen 133 LDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKF--AGFDMDAFEAFLHSLITGEFG 197 (401)
T ss_pred ceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhh--hccChHHHHHHHHHHHhcccc
Confidence 6677778899999999999999999999875322212 26677 789999999999999999987
No 238
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.98 E-value=0.16 Score=53.06 Aligned_cols=184 Identities=17% Similarity=0.161 Sum_probs=121.5
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhhcc-----hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCC---CHHHHHH
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGH-----IYSLAGLARAKYKVGQQYSAYKLINSIISEHKP---TGWMYQE 490 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~-----~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~---~g~ay~~ 490 (754)
+.-+++-|...++.|+|++|+..|++.....| ..+...++-++++.|+++.|+...++-|..+|+ ...+++-
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 34578889999999999999999987665432 235666777899999999999999999998874 5666666
Q ss_pred hhhcC------------ChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004426 491 RSLYN------------LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLF 558 (754)
Q Consensus 491 r~~y~------------~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~ 558 (754)
+|+.. .-.+|+.+|...+.--|+.-++-. +..++-....+++.++.+| |..|
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~d----A~~~i~~~~d~LA~~Em~I------------aryY 177 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPD----AKARIVKLNDALAGHEMAI------------ARYY 177 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhh----HHHHHHHHHHHHHHHHHHH------------HHHH
Confidence 65421 004566666666666666543321 2222222333344333333 3567
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCC
Q 004426 559 IAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG 638 (754)
Q Consensus 559 ~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~ 638 (754)
.+.|.+..|+.-++.+++--|+- +.
T Consensus 178 ~kr~~~~AA~nR~~~v~e~y~~t-------------------------------------------------------~~ 202 (254)
T COG4105 178 LKRGAYVAAINRFEEVLENYPDT-------------------------------------------------------SA 202 (254)
T ss_pred HHhcChHHHHHHHHHHHhccccc-------------------------------------------------------cc
Confidence 88888888888888888776553 12
Q ss_pred ChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 004426 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 674 (754)
Q Consensus 639 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 674 (754)
-.+++..+.+++.++|..++|-.. .+.|..|+-+.
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N~p~s 237 (254)
T COG4105 203 VREALARLEEAYYALGLTDEAKKT-AKVLGANYPDS 237 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHHHHH-HHHHHhcCCCC
Confidence 234556677788888888877766 55566654444
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.023 Score=60.29 Aligned_cols=158 Identities=16% Similarity=0.087 Sum_probs=106.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHh
Q 004426 520 YRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLN 598 (754)
Q Consensus 520 ~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~ 598 (754)
.-|.-....|++.+|...|..++...|. .+.....+.+|...|+.++|..-+...-.-..+. .... +.
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~--------~~~~---l~ 207 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK--------AAHG---LQ 207 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh--------HHHH---HH
Confidence 3445567778888888888888888885 5666667778888888887766554432222221 1110 11
Q ss_pred hhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC--chhH
Q 004426 599 HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS--EHER 676 (754)
Q Consensus 599 ~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~--~~ea 676 (754)
+|+.+..+....++ ...+.+.+..||++.++.+-+|..+...|++++|++.+=..++.+-. +.++
T Consensus 208 ----------a~i~ll~qaa~~~~---~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~ 274 (304)
T COG3118 208 ----------AQIELLEQAAATPE---IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEA 274 (304)
T ss_pred ----------HHHHHHHHHhcCCC---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHH
Confidence 12222222222232 35789999999999999999999999999999999998888877544 4556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 677 LVYEGWILYDTGHREEALSRAEKSI 701 (754)
Q Consensus 677 ~~~~G~~ly~~G~~eeAl~~~e~Ai 701 (754)
.-.+=.++.-.|.-|.+.-.|+|=+
T Consensus 275 Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 275 RKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 6666666777777666776776643
No 240
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.85 E-value=0.052 Score=67.21 Aligned_cols=225 Identities=13% Similarity=0.022 Sum_probs=120.6
Q ss_pred hHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC--HHHH---HHHHHHHHHcCCHHHHHHHHH
Q 004426 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF-KLS--VDCL---ELRAWLFIAADDYESALRDTL 572 (754)
Q Consensus 499 eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l-~p~--~~~~---~~ra~~~~~lgd~~~Al~d~~ 572 (754)
+-.+||++-+.-+|+.+..|.+--.-..+++..++|-+...|||.- ++. .+.+ ...-++...-|.-+.-.+-|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 3456888888888888888888888888888888888888888854 552 2222 222234445566666667777
Q ss_pred HHHhcCCCccccccchhhhHHHHHHhhhhcccc---------------chhhhhhhhhccccccccc-hHHHHHHHHHcC
Q 004426 573 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWS---------------PADCWIKLYDRWSSVDDIG-SLAVINQMLIND 636 (754)
Q Consensus 573 ~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~---------------~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~ 636 (754)
+|-+..--|. .+..+..+....+.++ .-..|....+.+-+.++.+ |-.++.|||..-
T Consensus 1522 RAcqycd~~~-------V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1522 RACQYCDAYT-------VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHhcchHH-------HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 7776554331 1111111111122222 2333444444444444433 333555555555
Q ss_pred CC--ChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CChH-HHH
Q 004426 637 PG--KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE--RTFE-AFF 711 (754)
Q Consensus 637 P~--~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~--~~~~-a~~ 711 (754)
|. +.+.----+.+-.+.|+.+.+...++-.+.-.|.-.|.+...--.-...|+-+-.-..|||+|.+. |.-. -||
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 55 444444444455555555555555555555555555555444444455566666666666766653 3333 344
Q ss_pred HHHHHhhccCCCCCchhHH
Q 004426 712 LKAYILADTNLDPESSTYV 730 (754)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~ 730 (754)
.|=..++-+-=|-+.-.+|
T Consensus 1675 KkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHHhcCchhhHHHH
Confidence 4444444433344433333
No 241
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.85 E-value=0.13 Score=55.71 Aligned_cols=259 Identities=16% Similarity=0.084 Sum_probs=145.0
Q ss_pred HHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc-------hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCC------
Q 004426 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGH-------IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPT------ 484 (754)
Q Consensus 418 ka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~-------~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~------ 484 (754)
+..++-++...+...-++.+++.+...-+..+- -+.+.-+++++..+|.++.+.+.|++|.....++
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 344555555555555555555554443333311 1233445666666666666776666665544332
Q ss_pred -------HHHHHHhhhcCChhhHHHHHHHHHhhCCCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004426 485 -------GWMYQERSLYNLGREKIVDLNYASELDPTL----------SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS 547 (754)
Q Consensus 485 -------g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~----------~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~ 547 (754)
|..|.....| ++|+....+|.++--.. ..+.+.++++|..+|+.-.|.+..+.|-++...
T Consensus 162 lqvcv~Lgslf~~l~D~---~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~ 238 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDY---EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ 238 (518)
T ss_pred eehhhhHHHHHHHHHhh---hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 2222222222 44444444444443222 245677899999999999999999999988652
Q ss_pred --HHHH-----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccc
Q 004426 548 --VDCL-----ELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSV 620 (754)
Q Consensus 548 --~~~~-----~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~ 620 (754)
..+. .-.|.+|..+||.+.|.+-|+.|...-..--.=.|++.+..- .|.||..+--... .
T Consensus 239 ~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g------------~Akc~~~~r~~~k-~ 305 (518)
T KOG1941|consen 239 HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDG------------AAKCLETLRLQNK-I 305 (518)
T ss_pred hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHH------------HHHHHHHHHHhhc-c
Confidence 2333 335578999999999999999997754321111122222221 2333333222200 0
Q ss_pred cccchHHHHHHHHHcCCC----Ch--hHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHH
Q 004426 621 DDIGSLAVINQMLINDPG----KS--FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 694 (754)
Q Consensus 621 ~d~~al~~~~~aL~l~P~----~~--~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 694 (754)
---+++....++|++... .. ..+-+.+.++--+|..++=-..+.+|-+.. .+.-.|-|.+=...|--+|-+
T Consensus 306 ~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~---~e~~L~Cg~CGe~~Glk~e~L 382 (518)
T KOG1941|consen 306 CNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV---EETELYCGLCGESIGLKNERL 382 (518)
T ss_pred cccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH---HHHhhhhhhhhhhhcCCcccc
Confidence 112256666666666432 11 236677777777777777666666655443 555567777766666655554
Q ss_pred H
Q 004426 695 S 695 (754)
Q Consensus 695 ~ 695 (754)
+
T Consensus 383 q 383 (518)
T KOG1941|consen 383 Q 383 (518)
T ss_pred c
Confidence 4
No 242
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0052 Score=65.66 Aligned_cols=102 Identities=14% Similarity=0.132 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHH
Q 004426 549 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV 628 (754)
Q Consensus 549 ~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~ 628 (754)
..+---|+-|++-++|..|+..|.+.|+-.-.+. |+
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~---------------------------------------dl----- 117 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADP---------------------------------------DL----- 117 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCc---------------------------------------cH-----
Confidence 3344578999999999999999999999765431 11
Q ss_pred HHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 629 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (754)
Q Consensus 629 ~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~ 704 (754)
++.+|+|||-+..-+|++..|+.+..+|+.++|.+.-+++-=+.|++.+.++++|+..-|..+.++
T Consensus 118 ----------navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 118 ----------NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ----------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 245688888888888888888888888888888888888888888888888888888777775553
No 243
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.79 E-value=0.0028 Score=47.94 Aligned_cols=40 Identities=18% Similarity=0.047 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHH
Q 004426 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRA 555 (754)
Q Consensus 516 ~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra 555 (754)
.+|..+|.+|.++|++++|+..|+++|+.+|+ +..+...+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 46777777778888888888888888877774 56555443
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.72 E-value=0.081 Score=59.76 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV---DCLELRAWLFIAADDYESALRDTLAL 574 (754)
Q Consensus 517 ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~---~~~~~ra~~~~~lgd~~~Al~d~~~a 574 (754)
+-..+|.+..++|+.+||+..++..++..|.. ...++...+++.+++|+++-+.+.+-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 33446777777888888888888888776642 33455556778888887777766664
No 245
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.64 E-value=0.0029 Score=67.74 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=75.0
Q ss_pred eEEehhhHHHhhcCHHHHHhhcCCCCCCC-cceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHhchhChhh
Q 004426 227 KEISFVRNKIASLSSPFKAMLYGGFVESK-RKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFANRFCCEE 305 (754)
Q Consensus 227 ~~f~aHR~iLaa~S~yF~aMf~~~~~Es~-~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~vlelL~aA~~f~l~~ 305 (754)
+.|.|.+-+|...-.||+..+.....+++ .++|+|+ -+-+..+|+=+|+|+....-. ++++||..||.-|++++|++
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idis-VhCDv~iF~WLm~yv~~~~p~-l~~~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDIS-VHCDVHIFEWLMRYVKGEPPS-LTPSNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceE-EecChhHHHHHHHHhhcCCCc-CCcCcEEEeEehhhhhccHH
Confidence 57999999999999999999965332322 2367775 367899999999999986655 89999999999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 004426 306 MKSACDAHLASLVG 319 (754)
Q Consensus 306 Lk~~Ce~~L~~~i~ 319 (754)
|.+.|-.|+.++++
T Consensus 92 Lve~cl~y~~~~~~ 105 (317)
T PF11822_consen 92 LVEECLQYCHDHMS 105 (317)
T ss_pred HHHHHHHHHHHhHH
Confidence 99999998876654
No 246
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.64 E-value=0.21 Score=58.90 Aligned_cols=287 Identities=15% Similarity=0.019 Sum_probs=181.5
Q ss_pred hhhhHhhccchHHHHHHHHHHhhhcchhhhhhHHHHHHHh-----CCHHHHHHHHHHHHH-------c-----cCCCHHH
Q 004426 425 LGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKV-----GQQYSAYKLINSIIS-------E-----HKPTGWM 487 (754)
Q Consensus 425 LG~v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~-----G~~~~A~~~~~~aI~-------~-----~~~~g~a 487 (754)
.|......++..+|..+|+.+.+.++..+...+|.+++.- .+.+.|+.++..+.. . .-.+|.+
T Consensus 218 ~~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~ 297 (552)
T KOG1550|consen 218 EGNERNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRL 297 (552)
T ss_pred cCcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHH
Confidence 3433344445778899999998999988888888876653 468889999988876 2 1247888
Q ss_pred HHHhhhcC--ChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCHHHHHHHHHHHH---
Q 004426 488 YQERSLYN--LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEG---QIRAAISEIDRIIVFKLSVDCLELRAWLFI--- 559 (754)
Q Consensus 488 y~~r~~y~--~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg---~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~--- 559 (754)
|..+.... ....|+..|.+|-++. ++.+.+.+|.++..-. ++..|...|.+|... -+..+.+..+.+|.
T Consensus 298 Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 298 YLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHILAIYRLALCYELGL 374 (552)
T ss_pred HhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CChHHHHHHHHHHHhCC
Confidence 88774221 3477999999999875 5677888888888755 578999999999942 24555555554432
Q ss_pred -HcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhh-ccccchhhhhhhhhccccccccchHH--HHHHH-HH
Q 004426 560 -AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV-RSWSPADCWIKLYDRWSSVDDIGSLA--VINQM-LI 634 (754)
Q Consensus 560 -~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~-~~~~~A~~~~~l~~~~~~~~d~~al~--~~~~a-L~ 634 (754)
..-+...|...|.+|.+.++- .+...++.+.... ..++.+. +...+.++..++...+.+ +.++- ..
T Consensus 375 gv~r~~~~A~~~~k~aA~~g~~--------~A~~~~~~~~~~g~~~~~~~~-~~~~~~a~~g~~~~q~~a~~l~~~~~~~ 445 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKGNP--------SAAYLLGAFYEYGVGRYDTAL-ALYLYLAELGYEVAQSNAAYLLDQSEED 445 (552)
T ss_pred CcCCCHHHHHHHHHHHHHccCh--------hhHHHHHHHHHHccccccHHH-HHHHHHHHhhhhHHhhHHHHHHHhcccc
Confidence 234889999999999999942 2233333222222 4444442 222233322222222111 11111 00
Q ss_pred cCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHc---C-CHHHHHHHHHHHHhcCCChHHH
Q 004426 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT---G-HREEALSRAEKSISIERTFEAF 710 (754)
Q Consensus 635 l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~---G-~~eeAl~~~e~Ai~l~~~~~a~ 710 (754)
+.+.. .....+.|...+.++...- +.+|...+|.+++.- + +++.|...|.+|-... -.+.
T Consensus 446 ~~~~~------------~~~~~~~~~~~~~~a~~~g--~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~ 509 (552)
T KOG1550|consen 446 LFSRG------------VISTLERAFSLYSRAAAQG--NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQAL 509 (552)
T ss_pred ccccc------------cccchhHHHHHHHHHHhcc--CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHH
Confidence 00100 0235666777777776544 788999999998876 4 4999999999998888 5599
Q ss_pred HHHHHHhhccCCCCCchhHHHHHHHHHhcC
Q 004426 711 FLKAYILADTNLDPESSTYVIQLLEEALRC 740 (754)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (754)
|+.||-.+-..==+- .--+-.+...|..|
T Consensus 510 ~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 510 FNLGYMHEHGEGIKV-LHLAKRYYDQASEE 538 (552)
T ss_pred hhhhhHHhcCcCcch-hHHHHHHHHHHHhc
Confidence 999998875422221 33444444444444
No 247
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.53 E-value=0.0035 Score=44.21 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 675 ERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (754)
Q Consensus 675 ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~ 706 (754)
++++.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45555666666666666666666666665553
No 248
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.53 E-value=0.051 Score=51.88 Aligned_cols=62 Identities=24% Similarity=0.095 Sum_probs=53.6
Q ss_pred hHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (754)
Q Consensus 641 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~ 702 (754)
.+...++..+...|++++|++.+++++.++|.+-.++..+-.++..+|+..+|+..|++..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34556788889999999999999999999999999999999999999999999999998743
No 249
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.50 E-value=0.1 Score=58.45 Aligned_cols=60 Identities=18% Similarity=0.102 Sum_probs=54.4
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS--SEHERLVYEGWILYDTGHREEALSRAEK 699 (754)
Q Consensus 640 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P--~~~ea~~~~G~~ly~~G~~eeAl~~~e~ 699 (754)
...++|+|.++...|.++.|...+..|..+-| .+++|....=.+-+.+|+.+.|++...|
T Consensus 619 ~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~ 680 (696)
T KOG2471|consen 619 GVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQ 680 (696)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHh
Confidence 35689999999999999999999999999988 7889999888999999999999987765
No 250
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.50 E-value=0.011 Score=70.06 Aligned_cols=90 Identities=20% Similarity=0.275 Sum_probs=83.7
Q ss_pred cchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 623 IGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (754)
Q Consensus 623 ~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~ 702 (754)
-.|++.+++.+...|+..-+....|+.+.|+|+.+||..+++.--..-+++-.-+-.+-.++-++|++|+|+..||+|+.
T Consensus 26 kkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 33799999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred cCCChH---HHHH
Q 004426 703 IERTFE---AFFL 712 (754)
Q Consensus 703 l~~~~~---a~~~ 712 (754)
-.|+-+ .+|.
T Consensus 106 ~~P~eell~~lFm 118 (932)
T KOG2053|consen 106 KYPSEELLYHLFM 118 (932)
T ss_pred hCCcHHHHHHHHH
Confidence 999955 4554
No 251
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.36 E-value=0.0049 Score=43.44 Aligned_cols=34 Identities=9% Similarity=0.059 Sum_probs=30.7
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (754)
Q Consensus 640 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 673 (754)
+.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3679999999999999999999999999999964
No 252
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.32 E-value=0.65 Score=58.10 Aligned_cols=227 Identities=11% Similarity=-0.003 Sum_probs=167.4
Q ss_pred HHHHHHHhhhcchhh--hhhHHHHHHHhCCHHHHHHHHHHHHHc-c-------CCCHHHHHHhhh-cCChhhHHHHHHHH
Q 004426 439 CYYFEAAADAGHIYS--LAGLARAKYKVGQQYSAYKLINSIISE-H-------KPTGWMYQERSL-YNLGREKIVDLNYA 507 (754)
Q Consensus 439 ~~~f~~AL~~~~~~a--~~~larv~~~~G~~~~A~~~~~~aI~~-~-------~~~g~ay~~r~~-y~~g~eAl~dl~kA 507 (754)
.++|++-+.-.|..+ |..+-.-+..+++.+.|.+...+|+.- + -+.-.+|.|.-+ |+..+.-.+.|++|
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 457887777655544 444444567788999999999888643 2 235666777643 43334456678888
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccccc
Q 004426 508 SELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHG 586 (754)
Q Consensus 508 i~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~ 586 (754)
-.+.- -.-.|..+.-+|..-+++++|.+.|++.++-=- ....|...+..++...+-++|-..+.+|++--|..
T Consensus 1524 cqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~----- 1597 (1710)
T KOG1070|consen 1524 CQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ----- 1597 (1710)
T ss_pred HHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh-----
Confidence 88753 345778899999999999999999999996433 36778888889999999999999999999999973
Q ss_pred chhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHH
Q 004426 587 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRL 665 (754)
Q Consensus 587 ~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~ 665 (754)
.+++...+. +++-- ..+|.+ .-..++--|.-+|.-.++|.-....-.+.|..+-+...|+|
T Consensus 1598 ------------eHv~~Iskf---AqLEF---k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1598 ------------EHVEFISKF---AQLEF---KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred ------------hhHHHHHHH---HHHHh---hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 344444444 23322 334444 56789999999999999999999999999999999999999
Q ss_pred HHhcCCCchh-HHHHHHHHHHHcCC
Q 004426 666 ARNHSSSEHE-RLVYEGWILYDTGH 689 (754)
Q Consensus 666 Al~l~P~~~e-a~~~~G~~ly~~G~ 689 (754)
++.+.=.=.. -.++.=|+-|...+
T Consensus 1660 vi~l~l~~kkmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1660 VIELKLSIKKMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred HHhcCCChhHhHHHHHHHHHHHHhc
Confidence 9988744333 34566677666543
No 253
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.27 Score=50.69 Aligned_cols=121 Identities=16% Similarity=0.015 Sum_probs=77.8
Q ss_pred HHhCCHHHHHHHHHHHHHccCCCHHHHH------HhhhcC-----ChhhHHHHHHHHHhhCCCC------hHHHHHHHHH
Q 004426 462 YKVGQQYSAYKLINSIISEHKPTGWMYQ------ERSLYN-----LGREKIVDLNYASELDPTL------SFPYKYRAVA 524 (754)
Q Consensus 462 ~~~G~~~~A~~~~~~aI~~~~~~g~ay~------~r~~y~-----~g~eAl~dl~kAi~LdP~~------~~ay~~rg~~ 524 (754)
++.+++.+|+..+.++|+++.+.|..-. ..+.+. ..+.|+.+|++|-++-... -..+...|..
T Consensus 84 ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY 163 (288)
T ss_pred hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence 4455666666666666666544333222 111111 1156666666665543322 2344556666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCH-------HHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 004426 525 KMEEGQIRAAISEIDRIIVFKLSV-------DCLEL-RAWLFIAADDYESALRDTLALLALESNYM 582 (754)
Q Consensus 525 l~~lg~~~eAl~~~~rAl~l~p~~-------~~~~~-ra~~~~~lgd~~~Al~d~~~al~l~P~~~ 582 (754)
-..+++|.+||..|.++.....+. ..+.. -|.+++...|.-.|.+.+++-.+++|.+.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 667899999999999998875532 22333 44688888999999999999999999974
No 254
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.26 E-value=0.038 Score=52.73 Aligned_cols=62 Identities=18% Similarity=0.099 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 515 ~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
..+...++..+...|++++|+..+++++.++|- -..+...-.+|...|+..+|++.|++..+
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356677888899999999999999999999995 55666677899999999999999988754
No 255
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=96.22 E-value=0.012 Score=59.26 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=76.2
Q ss_pred EEEEECCeEEehhhHHHhhcCH--HHHHhhcCC---CCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhHHHHH
Q 004426 220 VTFCVRDKEISFVRNKIASLSS--PFKAMLYGG---FVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLEL 294 (754)
Q Consensus 220 V~f~V~g~~f~aHR~iLaa~S~--yF~aMf~~~---~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~vlel 294 (754)
|.+.|||+.|-.-+--|..|-| ...+||.+. -.|+.+.-+-| |-+|.-|+.+|+|+..|.+...+.-+++++
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccHHHH
Confidence 9999999999988887777754 577899763 24455556666 779999999999999999987777789999
Q ss_pred HHHhchhChhhHHHHHHH
Q 004426 295 LSFANRFCCEEMKSACDA 312 (754)
Q Consensus 295 L~aA~~f~l~~Lk~~Ce~ 312 (754)
|..|++|++-+|+++-+.
T Consensus 88 LeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 88 LEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHhhHHhhHhHHhHHhh
Confidence 999999999999999887
No 256
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.39 Score=50.30 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=93.5
Q ss_pred HhhhhhhHhhccchHHHHHHHHHHhhhcc---hhhhhhHHHHHHHhCCHHHHHHHHHHHHH----ccCCCHHHHHHhh--
Q 004426 422 LHQLGCVMFEREEYKDACYYFEAAADAGH---IYSLAGLARAKYKVGQQYSAYKLINSIIS----EHKPTGWMYQERS-- 492 (754)
Q Consensus 422 l~~LG~v~~~~g~~~eA~~~f~~AL~~~~---~~a~~~larv~~~~G~~~~A~~~~~~aI~----~~~~~g~ay~~r~-- 492 (754)
.+.+..++...|+|.-....+.+.++.++ +....++|++..+.|+...|-..++++-. ++.--+.+...+.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34556667778899888888888888753 23566899999999999888777764322 2222222332221
Q ss_pred hcC----ChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH
Q 004426 493 LYN----LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV 548 (754)
Q Consensus 493 ~y~----~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~ 548 (754)
... ...+|...|++.++.||.++.+-+|.|.+++-+|+..+|+..+..+++..|.+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 111 12778888999999999999999999999999999999999999999999864
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.14 E-value=0.25 Score=55.96 Aligned_cols=159 Identities=14% Similarity=0.040 Sum_probs=102.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhcccc
Q 004426 527 EEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWS 605 (754)
Q Consensus 527 ~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~ 605 (754)
+..+.+.-++.-.+||+++|+ +++|...+. ..-.-..+|...|+++++...... |+....+.. -..
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~l---g~s~~~~~~------g~~-- 246 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASL---GKSQFLQHH------GHF-- 246 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhh---chhhhhhcc------cch--
Confidence 456788888888999999887 665544432 123346888888988888776531 111111100 000
Q ss_pred chhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC--chhHHHHHHHH
Q 004426 606 PADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS--EHERLVYEGWI 683 (754)
Q Consensus 606 ~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~--~~ea~~~~G~~ 683 (754)
++.+..-+ .+ -...+..++|.++.++|+.+||++.++..++.+|. +-..+.|+-.+
T Consensus 247 --------~e~~~~Rd-------------t~-~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~ 304 (539)
T PF04184_consen 247 --------WEAWHRRD-------------TN-VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEA 304 (539)
T ss_pred --------hhhhhccc-------------cc-hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHH
Confidence 00000000 00 01345677899999999999999999999998875 56689999999
Q ss_pred HHHcCCHHHHHHHHHHHHhc-CCChH-HH----HHHHHHhhcc
Q 004426 684 LYDTGHREEALSRAEKSISI-ERTFE-AF----FLKAYILADT 720 (754)
Q Consensus 684 ly~~G~~eeAl~~~e~Ai~l-~~~~~-a~----~~~~~~~~~~ 720 (754)
|+.+++|.++-+...|=-.+ -|..+ .. .||+-+.+|+
T Consensus 305 LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~ 347 (539)
T PF04184_consen 305 LLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDK 347 (539)
T ss_pred HHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccc
Confidence 99999999997766664333 24444 33 4566667775
No 258
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.12 E-value=0.26 Score=58.30 Aligned_cols=251 Identities=14% Similarity=0.052 Sum_probs=137.0
Q ss_pred hhHhhccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHH
Q 004426 427 CVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNY 506 (754)
Q Consensus 427 ~v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~k 506 (754)
+...+.|-+++|...|.+-- -+-.+...|..+|++.+|.+..+.--.. .+-..|++-+.| -+|-.|...
T Consensus 808 vLAieLgMlEeA~~lYr~ck------R~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~---Lear~Di~~ 876 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCK------RYDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKY---LEARRDIEA 876 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHH---HHhhccHHH
Confidence 34455566677766665411 1233455677777777776543322111 122344444333 333344444
Q ss_pred HHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccccc
Q 004426 507 ASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHG 586 (754)
Q Consensus 507 Ai~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~ 586 (754)
|+++-- .+-..+-.+...+..+..+++.|-+- .-++..|...|.-+...|+.+.|+..|..|-.-- .
T Consensus 877 AleyyE---K~~~hafev~rmL~e~p~~~e~Yv~~---~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~f-------s 943 (1416)
T KOG3617|consen 877 ALEYYE---KAGVHAFEVFRMLKEYPKQIEQYVRR---KRDESLYSWWGQYLESVGEMDAALSFYSSAKDYF-------S 943 (1416)
T ss_pred HHHHHH---hcCChHHHHHHHHHhChHHHHHHHHh---ccchHHHHHHHHHHhcccchHHHHHHHHHhhhhh-------h
Confidence 444311 11122344556666666666655432 2345666677888889999999999998875322 2
Q ss_pred chhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHH
Q 004426 587 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA 666 (754)
Q Consensus 587 ~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~A 666 (754)
.+.....++ ..++|+ .|+...++--+.+.+|.-+...|++.+|+..|.+|
T Consensus 944 ~VrI~C~qG-------k~~kAa-----------------------~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 944 MVRIKCIQG-------KTDKAA-----------------------RIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred heeeEeecc-------CchHHH-----------------------HHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 222222221 112221 24444555555566666666666666666666655
Q ss_pred HhcC--------CCchhHHHHHHH------------HHHHcC-CHHHHHHHHHHHHhcCCChH-HHHHH---HHHhhccC
Q 004426 667 RNHS--------SSEHERLVYEGW------------ILYDTG-HREEALSRAEKSISIERTFE-AFFLK---AYILADTN 721 (754)
Q Consensus 667 l~l~--------P~~~ea~~~~G~------------~ly~~G-~~eeAl~~~e~Ai~l~~~~~-a~~~~---~~~~~~~~ 721 (754)
-... .+--+.+.|++. .+-++| .++.|+-.|.||--+..-.| ||.-. |.-|--+-
T Consensus 994 qafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~D 1073 (1416)
T KOG3617|consen 994 QAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKD 1073 (1416)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHh
Confidence 4322 222344444433 244455 99999999999887777666 66543 44444566
Q ss_pred CCCCchhHHH
Q 004426 722 LDPESSTYVI 731 (754)
Q Consensus 722 ~~~~~~~~~~ 731 (754)
|||.|-..++
T Consensus 1074 Ld~~sDp~ll 1083 (1416)
T KOG3617|consen 1074 LDAGSDPKLL 1083 (1416)
T ss_pred cCCCCCHHHH
Confidence 8887765543
No 259
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.18 Score=54.19 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCHHHH-HHHH---HHHHHcCCHHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF-KLSVDCL-ELRA---WLFIAADDYESALRDTL 572 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l-~p~~~~~-~~ra---~~~~~lgd~~~Al~d~~ 572 (754)
.+|....++.+.--|++.-++..--.++.-+|+...-...+.|+|-. +|+..++ |..| ..+.+.|-|++|...-+
T Consensus 120 h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ 199 (491)
T KOG2610|consen 120 HEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQAD 199 (491)
T ss_pred cHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHH
Confidence 66777778888888888888888888888888888888888888877 7764444 3333 46778888888877666
Q ss_pred HHHhcCCCc
Q 004426 573 ALLALESNY 581 (754)
Q Consensus 573 ~al~l~P~~ 581 (754)
+++++||.+
T Consensus 200 ralqiN~~D 208 (491)
T KOG2610|consen 200 RALQINRFD 208 (491)
T ss_pred hhccCCCcc
Confidence 666666654
No 260
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.03 E-value=0.0092 Score=39.67 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 675 ERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (754)
Q Consensus 675 ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~ 706 (754)
.+++.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35666777777777777777777777776665
No 261
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.00 E-value=0.027 Score=51.08 Aligned_cols=81 Identities=20% Similarity=0.152 Sum_probs=59.5
Q ss_pred EEEEE-CCeEEehhhHHHhhcCHHHHHhhcCCCCCCC-cceEEecCCCCCHHHHHHHHHHhhcCCCCC------------
Q 004426 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESK-RKTIDFSHDGVSVEGLRAVEVYTRTSRVDL------------ 285 (754)
Q Consensus 220 V~f~V-~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~-~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~------------ 285 (754)
|+++- +|..|.+.+.+. ..|.-++.|+.+...+.. ...|.| ++|+..+|+.|++|++.-.-..
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl--~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPL--PNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccC--CCcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 55554 788999999976 689999999976433322 258999 9999999999999998543211
Q ss_pred ------CChhHHHHHHHHhchhCh
Q 004426 286 ------FCPGIVLELLSFANRFCC 303 (754)
Q Consensus 286 ------i~~~~vlelL~aA~~f~l 303 (754)
++.+.+++|+.+|+++++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344567778887777654
No 262
>PRK10941 hypothetical protein; Provisional
Probab=95.96 E-value=0.043 Score=58.42 Aligned_cols=65 Identities=18% Similarity=0.139 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 517 ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
-..|+=.++++.++++.|+...++.+.++|+ +..+.-||.+|.++|.+..|+.|++.-++..|+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 3456777899999999999999999999996 7778889999999999999999999999999987
No 263
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.88 E-value=0.0094 Score=66.93 Aligned_cols=107 Identities=14% Similarity=0.145 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhH
Q 004426 563 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL 642 (754)
Q Consensus 563 d~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~ 642 (754)
.+.+|+.+|.+++.-.|+.++++++.++..++. +|.. |-+.||-+...||+++|..-.+
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkR--------------------kW~~-d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKR--------------------KWRG-DSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhh--------------------hccc-cHHHHHHhHHhhccCChHHHHH
Confidence 344556666666666665555444433332211 2333 3344677888888888888999
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHH
Q 004426 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEA 693 (754)
Q Consensus 643 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeA 693 (754)
||+++.+|..++++.+|+.+...+....|.+.... ..++..-.+..+|
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~---~~v~~l~rDi~aa 495 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPTDVARQ---NFVLCLPRDISAA 495 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhh---hhhhccccchHHH
Confidence 99999999999999999999999999999766432 3345555555554
No 264
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.84 E-value=0.67 Score=51.55 Aligned_cols=39 Identities=10% Similarity=-0.189 Sum_probs=26.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 004426 646 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL 684 (754)
Q Consensus 646 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~l 684 (754)
.+.+..-.|+++.|.+.+++++++.|..-+..-+...+.
T Consensus 311 l~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~ 349 (374)
T PF13281_consen 311 LLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIK 349 (374)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 445555677888888888888888777665555444443
No 265
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.84 E-value=0.011 Score=41.02 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 675 ERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (754)
Q Consensus 675 ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~ 706 (754)
+|++++|++++.+|++++|+..|++.++.-|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 57888999999999999999999998888776
No 266
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=95.81 E-value=0.034 Score=61.31 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=71.9
Q ss_pred EEEEECCeEEehhhHHHhhcC--HHHHHhhcCCCCCCCcc--eEEecCCCCCHHHHHHHHHHhhcCCCCCCChhHHHHHH
Q 004426 220 VTFCVRDKEISFVRNKIASLS--SPFKAMLYGGFVESKRK--TIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELL 295 (754)
Q Consensus 220 V~f~V~g~~f~aHR~iLaa~S--~yF~aMf~~~~~Es~~~--~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~vlelL 295 (754)
|.|-|||+.|...+.-|+... .+|-++|++.+.-...+ .|-| |=+|+.|..+|+|+.||.++ ++.-....+|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~-~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLD-ASGVFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCC-CccCchhhhh
Confidence 999999999999999998776 58999998877544443 3666 77899999999999999999 6555555555
Q ss_pred H-HhchhChhhHHH---HHHHH
Q 004426 296 S-FANRFCCEEMKS---ACDAH 313 (754)
Q Consensus 296 ~-aA~~f~l~~Lk~---~Ce~~ 313 (754)
. =|.+|++..|.+ .|+.-
T Consensus 89 hdEA~fYGl~~llrrl~~~~~~ 110 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLRRLTLCEEL 110 (465)
T ss_pred hhhhhhcCcHHHHHHhhcCccc
Confidence 5 899999988876 45543
No 267
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.79 E-value=0.27 Score=45.47 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcC---CC--H--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 515 SFPYKYRAVAKME--EGQIRAAISEIDRIIVFK---LS--V--------DCLELRAWLFIAADDYESALRDTLALLALES 579 (754)
Q Consensus 515 ~~ay~~rg~~l~~--lg~~~eAl~~~~rAl~l~---p~--~--------~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P 579 (754)
+.+|+.++..-.+ .|-|++|.+.+++|.... |. . .|+..+.-++..+|+|++++..-+++|..
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y-- 84 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY-- 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--
Confidence 3566666665554 588999999999999873 21 1 13344666899999999999988877642
Q ss_pred CccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHH
Q 004426 580 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 659 (754)
Q Consensus 580 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeA 659 (754)
++|..-.+. ..-++|- -+-|++|.+|.-+|+.+||
T Consensus 85 -----FNRRGEL~q-----deGklWI-----------------------------------aaVfsra~Al~~~Gr~~eA 119 (144)
T PF12968_consen 85 -----FNRRGELHQ-----DEGKLWI-----------------------------------AAVFSRAVALEGLGRKEEA 119 (144)
T ss_dssp -----HHHH--TTS-----THHHHHH-----------------------------------HHHHHHHHHHHHTT-HHHH
T ss_pred -----Hhhcccccc-----ccchhHH-----------------------------------HHHHHHHHHHHhcCChHHH
Confidence 222221110 0001111 1235778888999999999
Q ss_pred HHHHHHHHhc
Q 004426 660 MRCLRLARNH 669 (754)
Q Consensus 660 l~~~~~Al~l 669 (754)
+..|+.|-+.
T Consensus 120 ~~~fr~agEM 129 (144)
T PF12968_consen 120 LKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988653
No 268
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.79 E-value=0.86 Score=49.64 Aligned_cols=171 Identities=16% Similarity=0.052 Sum_probs=112.0
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-ccc
Q 004426 511 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-----SVDCLELRAWLFIAADDYESALRDTLALLALESNY-MMF 584 (754)
Q Consensus 511 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p-----~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~-~~~ 584 (754)
.......|...+.+..+.|+++-|...+.++..+++ .+......+.++-..|+-.+|+..++..+.-.... ...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 667778899999999999999999999999998763 24555667888999999999999999999833221 000
Q ss_pred ccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHc------CCHHH
Q 004426 585 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL------NCQKA 658 (754)
Q Consensus 585 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~l------g~~ee 658 (754)
........ +.+. ..+.. .. -..--......+.++..+|.-...+ +..++
T Consensus 222 ~~~~~~~~--~~~~----~~~~~----------~~---------~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~ 276 (352)
T PF02259_consen 222 ISNAELKS--GLLE----SLEVI----------SS---------TNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDE 276 (352)
T ss_pred ccHHHHhh--cccc----ccccc----------cc---------cchhhhhHHHHHHHHHHHHHHHHhhccccccccHHH
Confidence 00000000 0000 00000 00 0000011111245667777777777 99999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhcCCC
Q 004426 659 AMRCLRLARNHSSSEHERLVYEGWILYDTGHR-----------------EEALSRAEKSISIERT 706 (754)
Q Consensus 659 Al~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~-----------------eeAl~~~e~Ai~l~~~ 706 (754)
++..|+.|+.++|+...+++..|..+...-.. ..|+..|=+|+.+.+.
T Consensus 277 ~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 277 ILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999888887665332 2366666666666655
No 269
>PRK10941 hypothetical protein; Provisional
Probab=95.77 E-value=0.035 Score=59.14 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=45.4
Q ss_pred hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 004426 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI 683 (754)
Q Consensus 625 al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ 683 (754)
|+.+.+++|.++|.++.-+--+|.++.++||+..|..+++.-++..|+++.+..-+-++
T Consensus 200 AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 200 ALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 47788888888888888787788888888888888888888888888887776554443
No 270
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.76 E-value=0.029 Score=44.53 Aligned_cols=46 Identities=30% Similarity=0.368 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhh
Q 004426 549 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH 600 (754)
Q Consensus 549 ~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~ 600 (754)
+++|..+..+.++|+|++|.+..+++|+++|++ ..+..+...+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N------~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN------RQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-------HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHH
Confidence 467788888888999999999999999999987 5555555554443
No 271
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.75 E-value=3.4 Score=44.03 Aligned_cols=158 Identities=11% Similarity=0.041 Sum_probs=100.8
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC-CH-HHHHHHHHHHHHcCCHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKME----EGQIRAAISEIDRIIVFKL-SV-DCLELRAWLFIAADDYESALRDT 571 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~----lg~~~eAl~~~~rAl~l~p-~~-~~~~~ra~~~~~lgd~~~Al~d~ 571 (754)
.+|..-|. ...+..++.+.+++|.++.. ..++.+|..-|++|....- .. ...+..+..+..-+ .+
T Consensus 94 ~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~------ 164 (292)
T COG0790 94 TKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QA------ 164 (292)
T ss_pred HHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hh------
Confidence 45555555 33345667777777777777 4477788888888876532 21 22333443332221 00
Q ss_pred HHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHH
Q 004426 572 LALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLL 651 (754)
Q Consensus 572 ~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~ 651 (754)
..... +.-.|+..|.+|-+.. ++.+.++.|.++.
T Consensus 165 ---~~~~~-----------------------------------------~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~ 198 (292)
T COG0790 165 ---LAVAY-----------------------------------------DDKKALYLYRKAAELG--NPDAQLLLGRMYE 198 (292)
T ss_pred ---hcccH-----------------------------------------HHHhHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence 00000 0011344555555554 7788888887775
Q ss_pred H----cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhcCCChHHHHH
Q 004426 652 R----LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG---------------HREEALSRAEKSISIERTFEAFFL 712 (754)
Q Consensus 652 ~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G---------------~~eeAl~~~e~Ai~l~~~~~a~~~ 712 (754)
. -.++++|..+|++|-+... ..+.+++| ++|..| +...|...+.++....+.....-+
T Consensus 199 ~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 275 (292)
T COG0790 199 KGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEAL 275 (292)
T ss_pred cCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHH
Confidence 5 3478899999999999997 88999999 888887 888888888888887766664444
Q ss_pred H
Q 004426 713 K 713 (754)
Q Consensus 713 ~ 713 (754)
+
T Consensus 276 ~ 276 (292)
T COG0790 276 R 276 (292)
T ss_pred H
Confidence 4
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.66 E-value=1.5 Score=47.71 Aligned_cols=197 Identities=16% Similarity=0.148 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----HHHHHHHH----HHHHHcCCHHHHHHHHHHH-----------
Q 004426 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-----VDCLELRA----WLFIAADDYESALRDTLAL----------- 574 (754)
Q Consensus 515 ~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-----~~~~~~ra----~~~~~lgd~~~Al~d~~~a----------- 574 (754)
....+.++...+..|++++|...++++...--+ ...-+.++ .-+..+...++++......
T Consensus 29 ~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~~~~~~~l~ 108 (352)
T PF02259_consen 29 PEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLSQNPQDLKSLL 108 (352)
T ss_pred hhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence 367778888888889999998888888765211 11111222 1233344444444433111
Q ss_pred --H-----hcCCCccccccchhhhHHHHHHhhhhc----cccchhhhhhhhhccccccccc-hHHHHHHHHHcCC----C
Q 004426 575 --L-----ALESNYMMFHGRVSGDHLVKLLNHHVR----SWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDP----G 638 (754)
Q Consensus 575 --l-----~l~P~~~~~~~~~~~~~~~~~l~~~~~----~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P----~ 638 (754)
. ...+++ .. -...+..-....+ ..+.+.+|++....-...+.+. |...+.++...++ .
T Consensus 109 ~~W~~Rl~~~~~~~---~~---~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~ 182 (352)
T PF02259_consen 109 KRWRSRLPNMQDDF---SV---WEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL 182 (352)
T ss_pred HHHHHHHHHhccch---HH---HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC
Confidence 1 111111 11 1122222223333 6677788888888777777777 7778888888652 2
Q ss_pred ChhHHHhHHHHHHHcCCHHHHHHHHHHHHhc-CC---------------------------------CchhHHHHHHHHH
Q 004426 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNH-SS---------------------------------SEHERLVYEGWIL 684 (754)
Q Consensus 639 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l-~P---------------------------------~~~ea~~~~G~~l 684 (754)
.+...+-.+.++...|+.++|+..++..++. .. .-+.++.-+|.-.
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 5678888999999999999999999999881 11 1144556666666
Q ss_pred HHc------CCHHHHHHHHHHHHhcCCChH-HHHHHHHHh
Q 004426 685 YDT------GHREEALSRAEKSISIERTFE-AFFLKAYIL 717 (754)
Q Consensus 685 y~~------G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~ 717 (754)
..+ +..++++..|++|+.++|+.+ +++.-|...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 666 899999999999999999888 777655543
No 273
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=95.64 E-value=0.32 Score=52.44 Aligned_cols=192 Identities=15% Similarity=0.067 Sum_probs=124.3
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL 577 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l 577 (754)
+||+.--.-...|-|+.++++--.+.++...-+...=...=-..|-+.-.-..+.+|+. .++++..+++|+..
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~l-------I~eg~all~rA~~~ 285 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRAL-------IDEGLALLDRALAS 285 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHH-------HHHHHHHHHHHHHc
Confidence 78888778888999999999999888887655432211111111111111111233443 46677777777775
Q ss_pred CCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHH
Q 004426 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 657 (754)
Q Consensus 578 ~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~e 657 (754)
.- .+=++++..+.. ||...- ...-.|-..+.-+.++|+.--.++..-.|++.++.+.-=++
T Consensus 286 ~~--------pGPYqlqAAIaa---------~HA~a~--~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 286 RR--------PGPYQLQAAIAA---------LHARAR--RAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred CC--------CChHHHHHHHHH---------HHHhhc--ccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHH
Confidence 52 222333332211 111111 00112333455566666666666777889999999999999
Q ss_pred HHHHHHHHHHhc--CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHH
Q 004426 658 AAMRCLRLARNH--SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAY 715 (754)
Q Consensus 658 eAl~~~~~Al~l--~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~ 715 (754)
.++...+...+- -..++..+-.+|-.|-++|+.+||-..|+|||++.++-. .=|++..
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 999998887766 566788899999999999999999999999999988766 5555543
No 274
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.35 Score=52.17 Aligned_cols=159 Identities=13% Similarity=0.085 Sum_probs=112.3
Q ss_pred hhhhhhHhhccchHHHHHHHHHHhhhcchh--hhhhHHHHHHHhCCHHHHHHHHHHHHHc-cCCCHHHHHHhhh------
Q 004426 423 HQLGCVMFEREEYKDACYYFEAAADAGHIY--SLAGLARAKYKVGQQYSAYKLINSIISE-HKPTGWMYQERSL------ 493 (754)
Q Consensus 423 ~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~--a~~~larv~~~~G~~~~A~~~~~~aI~~-~~~~g~ay~~r~~------ 493 (754)
|.-......+|++-+|....++.++--|++ ++...-++++-.|....-...+.++|.. +++.+--.+..|.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 334455667888888877788877765554 3333445677788877777788888877 4554333333332
Q ss_pred -cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CC-HHH--HHHHHHHHHHcCCHHHH
Q 004426 494 -YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF-K-LS-VDC--LELRAWLFIAADDYESA 567 (754)
Q Consensus 494 -y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l-~-p~-~~~--~~~ra~~~~~lgd~~~A 567 (754)
.+.+++|-+.-++|+++||.+..+....+.++...+|+.|+.+-..+--.. + .. ..+ |-.-+.++++.+.|+.|
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 344489999999999999999999999999999999999999877664322 1 11 112 22356789999999999
Q ss_pred HHHHHHHH--hcCCCc
Q 004426 568 LRDTLALL--ALESNY 581 (754)
Q Consensus 568 l~d~~~al--~l~P~~ 581 (754)
+.-|++-+ +++.++
T Consensus 267 leIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 267 LEIYDREIWKRLEKDD 282 (491)
T ss_pred HHHHHHHHHHHhhccc
Confidence 99998755 355554
No 275
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=5.6 Score=45.18 Aligned_cols=191 Identities=14% Similarity=0.081 Sum_probs=125.1
Q ss_pred cchHHHHHHHHHHhhh----cchh------------hhhhHHHHHHHhCCHHHHHHHHHHHHHcc---CC-------CHH
Q 004426 433 EEYKDACYYFEAAADA----GHIY------------SLAGLARAKYKVGQQYSAYKLINSIISEH---KP-------TGW 486 (754)
Q Consensus 433 g~~~eA~~~f~~AL~~----~~~~------------a~~~larv~~~~G~~~~A~~~~~~aI~~~---~~-------~g~ 486 (754)
|=+++|+++-+++|.. +..+ .+-.+.-+..-.|++.+|+.....+.... |. -+.
T Consensus 289 gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ 368 (629)
T KOG2300|consen 289 GYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQ 368 (629)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHH
Confidence 4557777766666654 1111 11123334567899999877766654432 22 355
Q ss_pred HHHHhhhcCCh----hhHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC-----------
Q 004426 487 MYQERSLYNLG----REKIVDLNYASELDPT---LSFPYKYRAVAKMEEGQIRAAISEIDRIIVF-KLS----------- 547 (754)
Q Consensus 487 ay~~r~~y~~g----~eAl~dl~kAi~LdP~---~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l-~p~----------- 547 (754)
.++-+|+|+.. ++|...|..|.++--. .+..-.|+|.+|.+.|+-+ ++-+++.. .|.
T Consensus 369 ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~e----d~y~~ld~i~p~nt~s~ssq~l~ 444 (629)
T KOG2300|consen 369 IHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAE----DLYKALDLIGPLNTNSLSSQRLE 444 (629)
T ss_pred HHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHH----HHHHHHHhcCCCCCCcchHHHHH
Confidence 55667777644 8888888888876433 2566778999999977643 34444433 332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHH
Q 004426 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (754)
Q Consensus 548 ~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 627 (754)
...++.+|.+.+.++++.||.+-.++.++.. +++-
T Consensus 445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed------------------------------------------- 479 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAED------------------------------------------- 479 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhh-------------------------------------------
Confidence 1235678888999999999999999999887 3111
Q ss_pred HHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHH
Q 004426 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY 679 (754)
Q Consensus 628 ~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~ 679 (754)
++|-- +-....+|.+..-+|+..|++...+-|+.+...-+|..+.
T Consensus 480 -~~rL~------a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vq 524 (629)
T KOG2300|consen 480 -LNRLT------ACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQ 524 (629)
T ss_pred -HHHHH------HHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHH
Confidence 11111 1123457888889999999999999999998776665543
No 276
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.50 E-value=0.73 Score=51.23 Aligned_cols=203 Identities=15% Similarity=0.084 Sum_probs=115.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcC-CCccccccch
Q 004426 518 YKYRAVAKMEEGQIRAAISEIDRIIVF----KLS-VDCLELRAWLFIA---ADDYESALRDTLALLALE-SNYMMFHGRV 588 (754)
Q Consensus 518 y~~rg~~l~~lg~~~eAl~~~~rAl~l----~p~-~~~~~~ra~~~~~---lgd~~~Al~d~~~al~l~-P~~~~~~~~~ 588 (754)
..++-..|.+.++|+.=+.-.+..=.+ -++ +..-+..|.++.. .||.++|+.-+..++.-+ +.+...+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~--- 220 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL--- 220 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH---
Confidence 345555666666666555555444433 111 2222334455555 777777777777744433 3332222
Q ss_pred hhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHH-
Q 004426 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR- 667 (754)
Q Consensus 589 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al- 667 (754)
.+.|.+.... |.++. --+. -..-.|...|.++.+++| +-..-.|.+.+|...|...+.-.-.++..
T Consensus 221 ---gL~GRIyKD~--~~~s~----~~d~---~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~ 287 (374)
T PF13281_consen 221 ---GLLGRIYKDL--FLESN----FTDR---ESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGV 287 (374)
T ss_pred ---HHHHHHHHHH--HHHcC----ccch---HHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHH
Confidence 2222221111 11110 0000 001125789999999995 55777899999999887544432222221
Q ss_pred -------hc----CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhccCCCCCchhHHHHHHHH
Q 004426 668 -------NH----SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEE 736 (754)
Q Consensus 668 -------~l----~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (754)
+. .-++-..+-.+..+..-.|++++|.+.++++++++ .++|+++. ...=|.|+-+
T Consensus 288 ~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~--~~~W~l~S------------t~~ni~Li~~ 353 (374)
T PF13281_consen 288 KLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK--PPAWELES------------TLENIKLIRH 353 (374)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--CcchhHHH------------HHHHHHHHHH
Confidence 11 11223344555566677899999999999999996 45676653 4456899999
Q ss_pred HhcCCCCCcccccc
Q 004426 737 ALRCPSDGLRKGQV 750 (754)
Q Consensus 737 ~~~~~~~~~~~~~~ 750 (754)
.-+.|++.-+|.|-
T Consensus 354 ~~~~~~~~~~~~~~ 367 (374)
T PF13281_consen 354 FRKRPEEPSPKQQL 367 (374)
T ss_pred HhcCCCCCCchhhh
Confidence 99999996666553
No 277
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=0.35 Score=50.80 Aligned_cols=156 Identities=10% Similarity=0.004 Sum_probs=110.7
Q ss_pred hhhhhhHhhccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCC-----CHHHHHHhhhcC-C
Q 004426 423 HQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKP-----TGWMYQERSLYN-L 496 (754)
Q Consensus 423 ~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~-----~g~ay~~r~~y~-~ 496 (754)
..-+.++..-+++++|.+...+...+ .+...-..++.+..+.+-|...+.++.....+ ++.+|.....-+ .
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~~l---E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGENL---EAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchh
Confidence 34466788889999998776652221 12222233566666777777777777766643 566665553211 1
Q ss_pred hhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHH-HHHH
Q 004426 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRD-TLAL 574 (754)
Q Consensus 497 g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d-~~~a 574 (754)
..+|.-.|+.--+--|-.+...+..|++.+.+||++||...+..||.-+++ |+.+.|.-.+-..+|.-.++... ..+.
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 277888888888866667888999999999999999999999999999885 88888888777777777666655 4566
Q ss_pred HhcCCCc
Q 004426 575 LALESNY 581 (754)
Q Consensus 575 l~l~P~~ 581 (754)
....|+.
T Consensus 269 k~~~p~h 275 (299)
T KOG3081|consen 269 KLSHPEH 275 (299)
T ss_pred HhcCCcc
Confidence 6677876
No 278
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.38 E-value=0.36 Score=55.72 Aligned_cols=113 Identities=18% Similarity=0.152 Sum_probs=90.2
Q ss_pred hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC----chhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS----EHERLVYEGWILYDTGHREEALSRAEKS 700 (754)
Q Consensus 625 al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~----~~ea~~~~G~~ly~~G~~eeAl~~~e~A 700 (754)
+-.+++.++..-|+.+...+..|.++...|+.++|++.+++|+..... .+-.++-+||++.-++++++|...+.+-
T Consensus 252 a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 252 AEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 566899999999999999999999999999999999999999964443 3556799999999999999999999999
Q ss_pred HhcCCChHHHH--HHHHHhh---ccCCCCCchhHHHHHHHHH
Q 004426 701 ISIERTFEAFF--LKAYILA---DTNLDPESSTYVIQLLEEA 737 (754)
Q Consensus 701 i~l~~~~~a~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~ 737 (754)
.....-.-||| .+|-.+. +..-.++.-.....+++++
T Consensus 332 ~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 332 LKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 99887777554 3444333 3333344446666676665
No 279
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.38 E-value=0.025 Score=37.41 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=31.1
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (754)
Q Consensus 640 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 673 (754)
+.+|+++|.++..+|++++|...++++++++|++
T Consensus 1 ~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred ChHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 3578999999999999999999999999999864
No 280
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.31 E-value=0.11 Score=48.08 Aligned_cols=92 Identities=21% Similarity=0.204 Sum_probs=62.6
Q ss_pred HhhccchHHHHHHHHHHhhhcc--------------hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc
Q 004426 429 MFEREEYKDACYYFEAAADAGH--------------IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY 494 (754)
Q Consensus 429 ~~~~g~~~eA~~~f~~AL~~~~--------------~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y 494 (754)
.+.-|-|++|...+++|.+... ...+.+++.++..+|+|++++....+++. |+||
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~--------YFNR--- 87 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR--------YFNR--- 87 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--------HHHH---
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH--------HHhh---
Confidence 4556789999999999988721 13477888899999999988776555443 3333
Q ss_pred CChhhHHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004426 495 NLGREKIVDLNYASELDPTL----SFPYKYRAVAKMEEGQIRAAISEIDRIIV 543 (754)
Q Consensus 495 ~~g~eAl~dl~kAi~LdP~~----~~ay~~rg~~l~~lg~~~eAl~~~~rAl~ 543 (754)
==+|+.+. ..+-++||.++..+|+.+||+..|+.+-+
T Consensus 88 ------------RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 88 ------------RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp ------------H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ------------ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 22222221 23557899999999999999999999875
No 281
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.30 E-value=0.18 Score=58.09 Aligned_cols=82 Identities=21% Similarity=0.192 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-----VDCLELRAWLFIAADDYESALRDTL 572 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-----~~~~~~ra~~~~~lgd~~~Al~d~~ 572 (754)
..+...+....+.-|+.+.-.+..|-++...|+.++|++.|++++....+ .-+++.+++++.-++||++|...|.
T Consensus 250 ~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 250 EEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 66777889999999999999999999999999999999999999964443 2345668999999999999999999
Q ss_pred HHHhcCC
Q 004426 573 ALLALES 579 (754)
Q Consensus 573 ~al~l~P 579 (754)
+..+.+.
T Consensus 330 ~L~~~s~ 336 (468)
T PF10300_consen 330 RLLKESK 336 (468)
T ss_pred HHHhccc
Confidence 8888665
No 282
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.30 E-value=0.69 Score=46.56 Aligned_cols=63 Identities=21% Similarity=0.148 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV--DCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 517 ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~--~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
+-.++|.++.++|++++|+..++..- +++. .....||-++..+||-++|...|.++++.+++.
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 45678999999999999999998877 5653 345779999999999999999999999998764
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.29 E-value=0.026 Score=40.77 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 676 RLVYEGWILYDTGHREEALSRAEKSISIE 704 (754)
Q Consensus 676 a~~~~G~~ly~~G~~eeAl~~~e~Ai~l~ 704 (754)
++.++|.++..+|++++|+..|++|+.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999977653
No 284
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.15 E-value=0.071 Score=48.74 Aligned_cols=89 Identities=16% Similarity=0.232 Sum_probs=75.7
Q ss_pred cccccccchHHHHHHHHHcCCCCh---hHHHhHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCchhHHHHHHH
Q 004426 617 WSSVDDIGSLAVINQMLINDPGKS---FLRFRQSLLLLRLNC-----------QKAAMRCLRLARNHSSSEHERLVYEGW 682 (754)
Q Consensus 617 ~~~~~d~~al~~~~~aL~l~P~~~---~~~~~~g~~L~~lg~-----------~eeAl~~~~~Al~l~P~~~ea~~~~G~ 682 (754)
|.+-+-+.||.+++..+...+++. ..+.-+|.++.++.. .-.|+++|+++..+.|+.+-.++.+|.
T Consensus 7 ~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~ 86 (111)
T PF04781_consen 7 FARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELAS 86 (111)
T ss_pred HHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHH
Confidence 334455668999999999999988 778899999977432 447999999999999999999999998
Q ss_pred HHHHcCCHHHHHHHHHHHHhc-CC
Q 004426 683 ILYDTGHREEALSRAEKSISI-ER 705 (754)
Q Consensus 683 ~ly~~G~~eeAl~~~e~Ai~l-~~ 705 (754)
-+--.-.|++++...+|++++ +|
T Consensus 87 ~l~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 87 QLGSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred HhhhHHHHHHHHHHHHHHhcccCC
Confidence 888888899999999999997 44
No 285
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.097 Score=51.32 Aligned_cols=101 Identities=13% Similarity=0.128 Sum_probs=74.8
Q ss_pred CCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCC-----------------C--
Q 004426 225 RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVD-----------------L-- 285 (754)
Q Consensus 225 ~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~-----------------~-- 285 (754)
+|+.|.+-..+. ..|.-.++++...-.......|.| +.|+..+|..|++|.+--+-+ .
T Consensus 13 DG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl--~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPL--PNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHHHH-HHhHHHHHHHHHcCCCccCCcccc--CccCHHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 566777766654 778888888864322222257888 889999999999999973321 0
Q ss_pred -----CChhHHHHHHHHhchhChhhHHHHHHHHHHhhcCC--HhhHHHHH
Q 004426 286 -----FCPGIVLELLSFANRFCCEEMKSACDAHLASLVGD--IEDALILI 328 (754)
Q Consensus 286 -----i~~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~--~~n~l~il 328 (754)
++..++++|+.+||++.+++|...|++.+...+.+ ++....++
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f 139 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIF 139 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHc
Confidence 34568999999999999999999999999988842 45444443
No 286
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.14 E-value=0.17 Score=44.74 Aligned_cols=77 Identities=14% Similarity=0.051 Sum_probs=57.2
Q ss_pred hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE--HERLVYEGWILYDTGHREEALSRAEKSI 701 (754)
Q Consensus 625 al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~--~ea~~~~G~~ly~~G~~eeAl~~~e~Ai 701 (754)
.++-+++.++.+|++.++.+.+|..+...|++++|++.+-.+++.+|++ ..+.-.+=-++--+|.-+.-...|+|-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3667889999999999999999999999999999999999999998877 4455555555666677777777777654
No 287
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.11 E-value=0.73 Score=54.76 Aligned_cols=55 Identities=11% Similarity=0.021 Sum_probs=36.0
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (754)
Q Consensus 643 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~ 702 (754)
||.+-.++.-+|+.++|-++. -...|--|-|.+|--+-..|++.+|+.-|.||-+
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA-----~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIA-----EESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhheeeEeeccCchHHHHHH-----HhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 344444444444444443332 2345566889999999999999999988888754
No 288
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.94 E-value=0.5 Score=50.70 Aligned_cols=84 Identities=13% Similarity=0.159 Sum_probs=66.2
Q ss_pred hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCch-hHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 004426 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH-ERLVYEGWILYDT--GHREEALSRAEKSI 701 (754)
Q Consensus 625 al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~-ea~~~~G~~ly~~--G~~eeAl~~~e~Ai 701 (754)
|..+|++++..-|.++++|..-..-|..+|+.+.|...|++++..-|... -...+.-|+-|.. |+.+.....++|+.
T Consensus 55 A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 55 ARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777777778888888888889999999999999999999888877 5667777776655 99999999999999
Q ss_pred hcCCChH
Q 004426 702 SIERTFE 708 (754)
Q Consensus 702 ~l~~~~~ 708 (754)
++-|+..
T Consensus 135 ~~~~~~~ 141 (280)
T PF05843_consen 135 ELFPEDN 141 (280)
T ss_dssp HHTTTS-
T ss_pred HHhhhhh
Confidence 9987744
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.91 E-value=0.042 Score=39.67 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004426 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFK 545 (754)
Q Consensus 517 ay~~rg~~l~~lg~~~eAl~~~~rAl~l~ 545 (754)
+|.++|.++.++|++++|++.|.++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45667777777777777777777765543
No 290
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=2.1 Score=47.64 Aligned_cols=174 Identities=12% Similarity=0.143 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccch
Q 004426 531 IRAAISEIDRIIVFKLS-VDCLELRAWLFIAADD--YESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPA 607 (754)
Q Consensus 531 ~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd--~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A 607 (754)
.++=+....-+|..+|+ +.+|+.|.+++...+. +..=++.++++++.||.+.. +..-+.-+-...+ ..
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh------~W~YRRfV~~~~~---~~ 161 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFH------AWHYRRFVVEQAE---RS 161 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCccccc------chHHHHHHHHHHh---cc
Confidence 44455555566666664 5666666666554442 45666666666666665532 1111110000000 00
Q ss_pred hhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHH------cC------CHHHHHHHHHHHHhcCCCchh
Q 004426 608 DCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR------LN------CQKAAMRCLRLARNHSSSEHE 675 (754)
Q Consensus 608 ~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~------lg------~~eeAl~~~~~Al~l~P~~~e 675 (754)
..+..+-+...+++|..++.|=.+|++|..+|-. -| ....-+.....|+--+|++..
T Consensus 162 -----------~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS 230 (421)
T KOG0529|consen 162 -----------RNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQS 230 (421)
T ss_pred -----------cccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccc
Confidence 0011123667899999999999999999999884 23 123456778899999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----HhcCCChH--HHHHHHHHhhccCCCCCchh
Q 004426 676 RLVYEGWILYDTGHREEALSRAEKS----ISIERTFE--AFFLKAYILADTNLDPESST 728 (754)
Q Consensus 676 a~~~~G~~ly~~G~~eeAl~~~e~A----i~l~~~~~--a~~~~~~~~~~~~~~~~~~~ 728 (754)
+++|.=|.+-..-+.+ .|..+ +++.=++. -++-....+.-+.++.|...
T Consensus 231 ~WfY~rWLl~~~~~~~----~~~~S~s~~ls~~~~~p~~~~l~~e~~~v~~~i~~E~~~ 285 (421)
T KOG0529|consen 231 CWFYHRWLLGRGMRRE----CYIVSHSALLSESFSEPLIKYLRSEIGLVQSTIGSEFET 285 (421)
T ss_pred eeeehHHhhccccccc----ccccccccccccccCCccHHHHHHHhhhhhhhhhhhccc
Confidence 9999888887754444 44333 33322222 55555555555555555544
No 291
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=0.88 Score=47.31 Aligned_cols=197 Identities=12% Similarity=0.011 Sum_probs=104.2
Q ss_pred HHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 461 KYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDR 540 (754)
Q Consensus 461 ~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~r 540 (754)
+....++++|-..+.+++..+.++...+. |. .+|-.-|..+.++.++.|+...|+|
T Consensus 41 fRnAk~feKakdcLlkA~~~yEnnrslfh----------AA--------------KayEqaamLake~~klsEvvdl~eK 96 (308)
T KOG1585|consen 41 FRNAKKFEKAKDCLLKASKGYENNRSLFH----------AA--------------KAYEQAAMLAKELSKLSEVVDLYEK 96 (308)
T ss_pred HHhhccHHHHHHHHHHHHHHHHhcccHHH----------HH--------------HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44556677777777777765543222211 11 2333345567777888888888888
Q ss_pred HHHcC-----CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchh--hhHHHHHHhhhhccccchhhhhh
Q 004426 541 IIVFK-----LSVD-CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS--GDHLVKLLNHHVRSWSPADCWIK 612 (754)
Q Consensus 541 Al~l~-----p~~~-~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~--~~~~~~~l~~~~~~~~~A~~~~~ 612 (754)
|..+- |++. ....++.=..+.-+.++|+..|++++++--+.-- -+++ .....+.+.-.++.+++|..
T Consensus 97 As~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr--~~ma~el~gk~sr~lVrl~kf~Eaa~--- 171 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDR--DQMAFELYGKCSRVLVRLEKFTEAAT--- 171 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch--HHHHHHHHHHhhhHhhhhHHhhHHHH---
Confidence 88772 3322 2233555567777888899999888875443200 0011 11112222233334444420
Q ss_pred hhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHcC
Q 004426 613 LYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH----SSSEHERLVYEGWILYDTG 688 (754)
Q Consensus 613 l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l----~P~~~ea~~~~G~~ly~~G 688 (754)
.+.+ ......-+..-|..-.++...-++++-.+++..|..+|+.--++ .|++..++-++ +--|+.|
T Consensus 172 a~lK---------e~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL-L~ayd~g 241 (308)
T KOG1585|consen 172 AFLK---------EGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL-LTAYDEG 241 (308)
T ss_pred HHHH---------hhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH-HHHhccC
Confidence 0000 11223333344555555555555555566888888888875433 34444444433 3357777
Q ss_pred CHHHHHHH
Q 004426 689 HREEALSR 696 (754)
Q Consensus 689 ~~eeAl~~ 696 (754)
+.|+.-..
T Consensus 242 D~E~~~kv 249 (308)
T KOG1585|consen 242 DIEEIKKV 249 (308)
T ss_pred CHHHHHHH
Confidence 77776543
No 292
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.67 E-value=0.15 Score=57.61 Aligned_cols=89 Identities=16% Similarity=-0.037 Sum_probs=80.2
Q ss_pred hHHHHHHHHHcCCCChhHHHhHHHHHHH---cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 625 SLAVINQMLINDPGKSFLRFRQSLLLLR---LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (754)
Q Consensus 625 al~~~~~aL~l~P~~~~~~~~~g~~L~~---lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai 701 (754)
++..|.+++..-|....++-|++.++.+ -|+.-.|+++.-.|++++|..--||++++-+|..++++.||++...-+.
T Consensus 393 ~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 393 AISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred HHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 4779999999999999999999999988 6788899999999999999999999999999999999999999988888
Q ss_pred hcCCChHHHHHH
Q 004426 702 SIERTFEAFFLK 713 (754)
Q Consensus 702 ~l~~~~~a~~~~ 713 (754)
-..|+..|--.+
T Consensus 473 ~~~Ptd~a~~~~ 484 (758)
T KOG1310|consen 473 MSFPTDVARQNF 484 (758)
T ss_pred hcCchhhhhhhh
Confidence 888866554443
No 293
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.62 E-value=0.083 Score=56.08 Aligned_cols=72 Identities=15% Similarity=-0.009 Sum_probs=62.3
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHH
Q 004426 645 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYI 716 (754)
Q Consensus 645 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~ 716 (754)
+.+.-..+.|+.|.|+..+.-|+.++|++++++.-.|...-.-.+.-+|-+.|-||+.|.|+.+ |--+++-+
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 4444457889999999999999999999999999999999999999999999999999999887 66666543
No 294
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.50 E-value=0.14 Score=45.21 Aligned_cols=77 Identities=14% Similarity=0.040 Sum_probs=57.7
Q ss_pred hHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH--HHHH-HHHHHHHHcCCHHHHHHHHHHHH
Q 004426 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV--DCLE-LRAWLFIAADDYESALRDTLALL 575 (754)
Q Consensus 499 eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~--~~~~-~ra~~~~~lgd~~~Al~d~~~al 575 (754)
..+..+.++++-+|++..+.+.+|..++..|++++|++.+-.+++-++++ +... ..-.++..+|.-+.....|++-+
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999864 3222 22246777787777777777654
No 295
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.46 E-value=8.5 Score=46.78 Aligned_cols=204 Identities=14% Similarity=0.022 Sum_probs=139.9
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHhhCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------HH
Q 004426 485 GWMYQERSLYNLGREKIVDLNYASELDPT---------LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS------VD 549 (754)
Q Consensus 485 g~ay~~r~~y~~g~eAl~dl~kAi~LdP~---------~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~------~~ 549 (754)
+|..+....| .+|-...+++...-|. .+...--+|.+....|++++|++-.++++..=|. ..
T Consensus 422 aW~~~s~~r~---~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 422 AWLLASQHRL---AEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHccCh---HHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 5555555444 7777777777666665 3455666899999999999999999999988663 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHH
Q 004426 550 CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVI 629 (754)
Q Consensus 550 ~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~ 629 (754)
++...+.+..-+|++++|+...+.+.++.-.|--++-.+-+......+.....+...|+. .... --..
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~---~~~~---------~~~~ 566 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQ---EKAF---------NLIR 566 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHH---------HHHH
Confidence 345577889999999999999999999876654444444444444444444442222221 0000 1246
Q ss_pred HHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC------chh-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS------EHE-RLVYEGWILYDTGHREEALSRAEKSIS 702 (754)
Q Consensus 630 ~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~------~~e-a~~~~G~~ly~~G~~eeAl~~~e~Ai~ 702 (754)
.|-+...|.+..+.--++.++..-.|.+++..-.+..+++--. ... ++..++.+.+..|++|+|.....+.-.
T Consensus 567 ~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 567 EQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6777778887777666666666666688888888888765422 222 234788899999999999999888877
Q ss_pred c
Q 004426 703 I 703 (754)
Q Consensus 703 l 703 (754)
+
T Consensus 647 l 647 (894)
T COG2909 647 L 647 (894)
T ss_pred H
Confidence 6
No 296
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.38 E-value=0.061 Score=37.22 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=30.9
Q ss_pred hHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (754)
Q Consensus 641 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 673 (754)
++++++|.++.++|++++|++.+++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999985
No 297
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.23 E-value=0.071 Score=38.93 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 674 HERLVYEGWILYDTGHREEALSRAEKSISIER 705 (754)
Q Consensus 674 ~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~ 705 (754)
+.++.++|.++..+|++++|...+++|+++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 35789999999999999999999999998754
No 298
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.67 Score=49.48 Aligned_cols=123 Identities=16% Similarity=0.080 Sum_probs=90.8
Q ss_pred hhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHH-HHh-hhcC--Chh
Q 004426 425 LGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMY-QER-SLYN--LGR 498 (754)
Q Consensus 425 LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay-~~r-~~y~--~g~ 498 (754)
-+......+++.+|...|..++...+ ..+..++++++...|+.+.|...+.........-.+.- ..+ .... ...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 35556778899999999999998843 45788899999999999888777766544333221111 111 1110 001
Q ss_pred hHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004426 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS 547 (754)
Q Consensus 499 eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~ 547 (754)
.-..++.+.+.-||++..+-+.+|..+...|++++|++.+=..++-+-+
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 2245788999999999999999999999999999999999999987664
No 299
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.10 E-value=17 Score=43.47 Aligned_cols=279 Identities=17% Similarity=0.119 Sum_probs=173.5
Q ss_pred chhhhHHHHHHHhhhhhhHh-hccchHHHHHHHHHHhhhc--ch------hhhhhHHHHHHHhCCHHHHHHHHHHHHHcc
Q 004426 411 CSTERWQRMLALHQLGCVMF-EREEYKDACYYFEAAADAG--HI------YSLAGLARAKYKVGQQYSAYKLINSIISEH 481 (754)
Q Consensus 411 ~~~~~~qka~Al~~LG~v~~-~~g~~~eA~~~f~~AL~~~--~~------~a~~~larv~~~~G~~~~A~~~~~~aI~~~ 481 (754)
+...+.+.+.....+|.+++ +..++++|+.+.++++.+. +. .+..-+++++.+.+... |...+++.|+..
T Consensus 51 ~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~ 129 (608)
T PF10345_consen 51 FKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS 129 (608)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence 44455667788889999877 7899999999999998873 21 13345688888888887 999999999875
Q ss_pred CC---CHHHHHHhhh-------cCChhhHHHHHHHHHhhC--CCChHHH----HHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 004426 482 KP---TGWMYQERSL-------YNLGREKIVDLNYASELD--PTLSFPY----KYRAVAKMEEGQIRAAISEIDRIIVF- 544 (754)
Q Consensus 482 ~~---~g~ay~~r~~-------y~~g~eAl~dl~kAi~Ld--P~~~~ay----~~rg~~l~~lg~~~eAl~~~~rAl~l- 544 (754)
.+ .+|.|.-|-. ......|+..+++...+. +.+...+ ...|.+....+..+++++..++++..
T Consensus 130 ~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~ 209 (608)
T PF10345_consen 130 ETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQA 209 (608)
T ss_pred hccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Confidence 43 5666655421 124466888888888876 3554333 33577777888899999999988543
Q ss_pred -----CCC-----HHHHH--HHHHHHHHcCCHHHHHHH---HHHHHh---cCC-------Cc-c----------------
Q 004426 545 -----KLS-----VDCLE--LRAWLFIAADDYESALRD---TLALLA---LES-------NY-M---------------- 582 (754)
Q Consensus 545 -----~p~-----~~~~~--~ra~~~~~lgd~~~Al~d---~~~al~---l~P-------~~-~---------------- 582 (754)
+|+ ...+. ..-.++...|+++.+... ++..+. -.| +. .
T Consensus 210 ~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~ 289 (608)
T PF10345_consen 210 RSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPL 289 (608)
T ss_pred hhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCcee
Confidence 222 22222 233568888887666544 333332 222 10 0
Q ss_pred --ccccchhhhH---HHHHHh--------hhhccccchhhhhhhhhccccccccchHHHHHHHH---------------H
Q 004426 583 --MFHGRVSGDH---LVKLLN--------HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML---------------I 634 (754)
Q Consensus 583 --~~~~~~~~~~---~~~~l~--------~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL---------------~ 634 (754)
.+.+...... ...-+- ...+.++++ +..+++.+ +
T Consensus 290 ~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~------------------l~~i~~~~~~~~~~~~~sl~~~~~ 351 (608)
T PF10345_consen 290 VFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKA------------------LKQIEKLKIKSPSAPSESLSEASE 351 (608)
T ss_pred EEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHH------------------HHHHHHhhccCCCCCCcCHHHHHH
Confidence 0111111111 111110 111111122 22333333 1
Q ss_pred cCCC----ChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcC---C------CchhHHHHHHHHHHHcCCHHHHHHHHH---
Q 004426 635 NDPG----KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS---S------SEHERLVYEGWILYDTGHREEALSRAE--- 698 (754)
Q Consensus 635 l~P~----~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~---P------~~~ea~~~~G~~ly~~G~~eeAl~~~e--- 698 (754)
..++ .-...+.++.+..-+|++..|......+.... | -.+..++-.|+..-..|+.+.|...|.
T Consensus 352 ~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~ 431 (608)
T PF10345_consen 352 RIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPR 431 (608)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhH
Confidence 1111 11235667777777999988998888777653 2 247789999999999999999999997
Q ss_pred -----HHHhcCCChH
Q 004426 699 -----KSISIERTFE 708 (754)
Q Consensus 699 -----~Ai~l~~~~~ 708 (754)
.+....+..|
T Consensus 432 ~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 432 FLLCEAANRKSKFRE 446 (608)
T ss_pred HhhhhhhccCCcchH
Confidence 6667777777
No 300
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.99 E-value=1.8 Score=44.87 Aligned_cols=177 Identities=15% Similarity=0.077 Sum_probs=107.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHH
Q 004426 521 RAVAKMEEGQIRAAISEIDRIIVFKLS------VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 594 (754)
Q Consensus 521 rg~~l~~lg~~~eAl~~~~rAl~l~p~------~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~ 594 (754)
-|+.|...++++.|=..|-+|-.+... ...-|.-+.=.++.++.++|+.++++++++--+. ..-++++.+-.
T Consensus 40 Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~--Grf~~aAk~~~ 117 (288)
T KOG1586|consen 40 AANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDM--GRFTMAAKHHI 117 (288)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhh--hHHHHHHhhhh
Confidence 356777788888888888888776331 2222343433455669999999999999988764 11223333221
Q ss_pred HHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCC------ChhHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 004426 595 KLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPG------KSFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (754)
Q Consensus 595 ~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~------~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 667 (754)
. .| .+|+. ...|++ |+..|++|-+--.+ ....+..-+..-..++.+..|++.|++..
T Consensus 118 ~----------ia----EiyEs--dl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 118 E----------IA----EIYES--DLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVA 181 (288)
T ss_pred h----------HH----HHHhh--hHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 11211 113333 45666666543222 11222233334455899999999999999
Q ss_pred hcCCCchhH-------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH----HHHHHHH
Q 004426 668 NHSSSEHER-------LVYEGWILYDTGHREEALSRAEKSISIERTFE----AFFLKAY 715 (754)
Q Consensus 668 ~l~P~~~ea-------~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~----a~~~~~~ 715 (754)
+..-+|.-. +..-|+|.+-.++.=-+-...++=-+++|+|. -=|+|-.
T Consensus 182 ~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L 240 (288)
T KOG1586|consen 182 RSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDL 240 (288)
T ss_pred HHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHH
Confidence 988777533 45567888777776666666666677999996 3455543
No 301
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.97 E-value=0.28 Score=52.58 Aligned_cols=128 Identities=16% Similarity=0.056 Sum_probs=92.8
Q ss_pred hhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHHc
Q 004426 610 WIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKA-AMRCLRLARNHSSSEHERLVYEGWILYDT 687 (754)
Q Consensus 610 ~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~ee-Al~~~~~Al~l~P~~~ea~~~~G~~ly~~ 687 (754)
|++......+...++ |-.+|.+|+...+...+.|..-|..-...+...+ |...|++++..-|++.+.....-.-|...
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 333333333344444 5679999997777789999999999788555555 99999999999999999999888999999
Q ss_pred CCHHHHHHHHHHHHhcCCChH---HHHHHHHHhhccCCCCCchhHHHHHHHHH
Q 004426 688 GHREEALSRAEKSISIERTFE---AFFLKAYILADTNLDPESSTYVIQLLEEA 737 (754)
Q Consensus 688 G~~eeAl~~~e~Ai~l~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (754)
|+.+.|-..|||++..-|.-. ..+.|=.-++-..-|.++-..|.+-.+++
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999755554 56666666665555666666666555554
No 302
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.88 E-value=1.2 Score=44.94 Aligned_cols=98 Identities=13% Similarity=0.081 Sum_probs=64.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC--HHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHH
Q 004426 519 KYRAVAKMEEGQIRAAISEIDRIIVFKLS--VDCL--ELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 594 (754)
Q Consensus 519 ~~rg~~l~~lg~~~eAl~~~~rAl~l~p~--~~~~--~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~ 594 (754)
..+|-++.+.|++++|+..++.++..--+ .... ...+.+..++|.+|+|+..++..-. ++
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~-------------- 156 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ES-------------- 156 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--cc--------------
Confidence 44677888888888888888888864333 2222 2245678888888888775443211 11
Q ss_pred HHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 004426 595 KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 674 (754)
Q Consensus 595 ~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 674 (754)
+.+..-..+|.+|..+|+-++|...|.+|++..++.+
T Consensus 157 -------------------------------------------w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 157 -------------------------------------------WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred -------------------------------------------HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 1112223478888888888888888888888876654
Q ss_pred h
Q 004426 675 E 675 (754)
Q Consensus 675 e 675 (754)
.
T Consensus 194 ~ 194 (207)
T COG2976 194 A 194 (207)
T ss_pred H
Confidence 3
No 303
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.66 E-value=0.2 Score=39.77 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 676 RLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 676 a~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
-+++++..+|++|+|++|...-+++++++|++.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 345555555555555555555555555555555
No 304
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.65 E-value=12 Score=40.07 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=62.8
Q ss_pred HHHHhhhhhhHhhcc-chHHHHHHHHHHhhh----cchh------------hhhhHHHHHHHhCCHHHHHHHHHHHHHcc
Q 004426 419 MLALHQLGCVMFERE-EYKDACYYFEAAADA----GHIY------------SLAGLARAKYKVGQQYSAYKLINSIISEH 481 (754)
Q Consensus 419 a~Al~~LG~v~~~~g-~~~eA~~~f~~AL~~----~~~~------------a~~~larv~~~~G~~~~A~~~~~~aI~~~ 481 (754)
+..+++.|......+ ++++|..++++|.++ .... .+..+++++...+.++
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~------------- 101 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYE------------- 101 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChH-------------
Confidence 446899999999999 999999999998887 1100 1122222332222221
Q ss_pred CCCHHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004426 482 KPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF 544 (754)
Q Consensus 482 ~~~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l 544 (754)
...+|...++.+..--|+.+..+.-.-.++...++.+++.+.+.++|.-
T Consensus 102 --------------~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 102 --------------SVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred --------------HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 1134555555555666777777755555555578888888888888864
No 305
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.28 E-value=2.9 Score=49.24 Aligned_cols=65 Identities=23% Similarity=0.264 Sum_probs=46.7
Q ss_pred HHHcCCHHHHHHH------HHHHHh-----cCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------Ch
Q 004426 650 LLRLNCQKAAMRC------LRLARN-----HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER-----------TF 707 (754)
Q Consensus 650 L~~lg~~eeAl~~------~~~Al~-----l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~-----------~~ 707 (754)
|-+.|-.++|+.. |+-|.. ..-.-++.|..++.-|-+.|++++|-..|-+||.++- -|
T Consensus 960 lnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrf 1039 (1636)
T KOG3616|consen 960 LNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRF 1039 (1636)
T ss_pred HHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchh
Confidence 4446666666643 222222 2234688999999999999999999999999999863 35
Q ss_pred HHHHHHH
Q 004426 708 EAFFLKA 714 (754)
Q Consensus 708 ~a~~~~~ 714 (754)
++-|+++
T Consensus 1040 d~e~ir~ 1046 (1636)
T KOG3616|consen 1040 DAEFIRA 1046 (1636)
T ss_pred hHHHHHc
Confidence 6777765
No 306
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.25 E-value=1.3 Score=48.57 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=23.0
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHS 670 (754)
Q Consensus 642 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~ 670 (754)
.+.+....+...|..|-|+..++..++++
T Consensus 156 v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 156 VFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 35566667777888888888888888887
No 307
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=93.24 E-value=0.42 Score=39.09 Aligned_cols=56 Identities=23% Similarity=0.191 Sum_probs=43.8
Q ss_pred EEEEE-CCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhc
Q 004426 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRT 280 (754)
Q Consensus 220 V~f~V-~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYT 280 (754)
|+|+- +|+.|.+.+.+. ..|..++.||.+...+.. .|.| ++|+..+|+.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl--~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPL--PNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEE--TTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--cccc--CccCHHHHHHHHHHHHh
Confidence 45554 678899988877 589999999976433333 7999 99999999999999863
No 308
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.09 E-value=3.7 Score=43.80 Aligned_cols=144 Identities=13% Similarity=-0.030 Sum_probs=95.1
Q ss_pred chHHHHHHHHHHhhhcchhhhhhHHHHHHH----hCCHHHHHHHHHHHHHccCCCH--------HHHHHhh----hcCCh
Q 004426 434 EYKDACYYFEAAADAGHIYSLAGLARAKYK----VGQQYSAYKLINSIISEHKPTG--------WMYQERS----LYNLG 497 (754)
Q Consensus 434 ~~~eA~~~f~~AL~~~~~~a~~~larv~~~----~G~~~~A~~~~~~aI~~~~~~g--------~ay~~r~----~y~~g 497 (754)
+..+|..+|..+.+.++..+...+|.++.. ..+..+|..+|.++.......+ .+|.... .....
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~ 171 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDD 171 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence 456666777766666666666666665554 2356667777777666543322 2222210 00011
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-----------
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKME----EGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAAD----------- 562 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~----lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lg----------- 562 (754)
..|..-|.+|-... +..+..++|..|.. ..++++|+.-|.+|-+... ....+..+ ++...|
T Consensus 172 ~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~~a~~~~~-~~~~~g~g~~~~~~~~~ 247 (292)
T COG0790 172 KKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-GAACYNLG-LMYLNGEGVKKAAFLTA 247 (292)
T ss_pred HhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHH-HHHhcCCCchhhhhccc
Confidence 35777788887776 88899999988865 3488999999999998776 55556666 555444
Q ss_pred ----CHHHHHHHHHHHHhcCCCc
Q 004426 563 ----DYESALRDTLALLALESNY 581 (754)
Q Consensus 563 ----d~~~Al~d~~~al~l~P~~ 581 (754)
+...|...++++-...+..
T Consensus 248 ~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 248 AKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred ccCCCHHHHHHHHHHHHHcCChh
Confidence 8899999999999888764
No 309
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.08 E-value=1.2 Score=51.59 Aligned_cols=126 Identities=13% Similarity=-0.051 Sum_probs=77.9
Q ss_pred HHHHHHHHHHcCCC-HHHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhh
Q 004426 534 AISEIDRIIVFKLS-VDCLEL--RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCW 610 (754)
Q Consensus 534 Al~~~~rAl~l~p~-~~~~~~--ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~ 610 (754)
|+..+..-+.++|+ +..+.. +...+..+++...|....++++..||++.+.+.+.++.... ....
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~------~~~~------ 117 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALEL------DGLQ------ 117 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHH------hhhH------
Confidence 45555555556664 443222 45566677777777777777777777775433332221111 1111
Q ss_pred hhhhhccccccccchHH-HHHHHHHcCCCChhHHHhH------HHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 004426 611 IKLYDRWSSVDDIGSLA-VINQMLINDPGKSFLRFRQ------SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI 683 (754)
Q Consensus 611 ~~l~~~~~~~~d~~al~-~~~~aL~l~P~~~~~~~~~------g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ 683 (754)
..+++ ..+.+....|.+....+-+ |..+..+|+.++|.....++.++.|.+++ +..||+
T Consensus 118 ------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~--~~~~~~ 183 (620)
T COG3914 118 ------------FLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR--VLGALM 183 (620)
T ss_pred ------------HHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh--hHhHHH
Confidence 11122 3444777777777776666 88899999999999999999999999954 445554
Q ss_pred HH
Q 004426 684 LY 685 (754)
Q Consensus 684 ly 685 (754)
-.
T Consensus 184 ~~ 185 (620)
T COG3914 184 TA 185 (620)
T ss_pred HH
Confidence 43
No 310
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.91 E-value=0.33 Score=49.84 Aligned_cols=49 Identities=18% Similarity=0.060 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 004426 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 674 (754)
Q Consensus 626 l~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 674 (754)
...|+|+|++.|.....||+.|.-..+-|+.+.|.+.|++.++++|.++
T Consensus 15 aely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 15 AELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred HHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3355555555555555555555555555555555555555555555443
No 311
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=92.85 E-value=0.21 Score=53.10 Aligned_cols=83 Identities=14% Similarity=-0.020 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhh
Q 004426 530 QIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADC 609 (754)
Q Consensus 530 ~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~ 609 (754)
+..||+..++.|.. ....|+.+.|...|+.|++++|++. .+....+...+.-...-+|
T Consensus 112 ~~kEA~~Al~~A~~--------------~~~~Gk~ekA~~lfeHAlalaP~~p------~~L~e~G~f~E~~~~iv~A-- 169 (472)
T KOG3824|consen 112 KVKEAILALKAAGR--------------SRKDGKLEKAMTLFEHALALAPTNP------QILIEMGQFREMHNEIVEA-- 169 (472)
T ss_pred hhHHHHHHHHHHHH--------------HHhccchHHHHHHHHHHHhcCCCCH------HHHHHHhHHHHhhhhhHhh--
Confidence 55666666665552 3467888888888888888888873 3333333333333333333
Q ss_pred hhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHH
Q 004426 610 WIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL 650 (754)
Q Consensus 610 ~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L 650 (754)
=.+|-+||.++|++.++..|++...
T Consensus 170 ----------------Dq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 170 ----------------DQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred ----------------hhhhheeeeeCCCchHHHhhhhccc
Confidence 2467777777777777777765443
No 312
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.83 E-value=0.26 Score=56.44 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=83.7
Q ss_pred ccccccccc-hHHHHHHHHHcCCCChh-HHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHH
Q 004426 616 RWSSVDDIG-SLAVINQMLINDPGKSF-LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEA 693 (754)
Q Consensus 616 ~~~~~~d~~-al~~~~~aL~l~P~~~~-~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeA 693 (754)
.|..++..- |.+|+.+|+-..|-..+ ...+++.++..-|-.-.|-..+.++++++...+--++..|..++.+.+.++|
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 455666555 78999999999997654 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChH
Q 004426 694 LSRAEKSISIERTFE 708 (754)
Q Consensus 694 l~~~e~Ai~l~~~~~ 708 (754)
++.+++|+.+.|+..
T Consensus 696 ~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCP 710 (886)
T ss_pred HHHHHHHHhcCCCCh
Confidence 999999999999875
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.34 E-value=1.6 Score=44.35 Aligned_cols=82 Identities=20% Similarity=0.130 Sum_probs=66.7
Q ss_pred hhhhccccccccchHHHHHHHHHcC-CCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHH
Q 004426 612 KLYDRWSSVDDIGSLAVINQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE----HERLVYEGWILYD 686 (754)
Q Consensus 612 ~l~~~~~~~~d~~al~~~~~aL~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~----~ea~~~~G~~ly~ 686 (754)
-+|..|++.+|..|+..|-++-... -..+++.+.+|..+. ..+++.|+..+-+|+++.+.+ ++.+..++.+++.
T Consensus 112 llYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 112 LLYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 5788999999888888776543322 356788888887777 466777999999999998765 9999999999999
Q ss_pred cCCHHHHH
Q 004426 687 TGHREEAL 694 (754)
Q Consensus 687 ~G~~eeAl 694 (754)
+|++++|.
T Consensus 191 ~~~~e~AY 198 (203)
T PF11207_consen 191 LKNYEQAY 198 (203)
T ss_pred hcchhhhh
Confidence 99999985
No 314
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.15 E-value=0.21 Score=51.22 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=42.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 524 AKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 524 ~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
.+.+.++.+.|.+.|++|+++.|. ...|...|.-..+.|+++.|.+.|++.+++||.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344567777777777888777776 4556666667777777777888888888887765
No 315
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.01 E-value=2.9 Score=48.44 Aligned_cols=85 Identities=12% Similarity=0.005 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCC-HHHHHHH------HHHHHHcCCHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDR-IIVFKLS-VDCLELR------AWLFIAADDYESALR 569 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~r-Al~l~p~-~~~~~~r------a~~~~~lgd~~~Al~ 569 (754)
..+...+..++..||++..++.++|.++...|..-.|+.++.. +....|+ ......+ +..+..+|+-++|..
T Consensus 84 ~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 163 (620)
T COG3914 84 TLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAEL 163 (620)
T ss_pred hhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHH
Confidence 5677788999999999999999999999999999999998888 8888885 4444444 778899999999999
Q ss_pred HHHHHHhcCCCcc
Q 004426 570 DTLALLALESNYM 582 (754)
Q Consensus 570 d~~~al~l~P~~~ 582 (754)
+..++..+.|+++
T Consensus 164 ~l~~~~d~~p~~~ 176 (620)
T COG3914 164 ALERAVDLLPKYP 176 (620)
T ss_pred HHHHHHHhhhhhh
Confidence 9999999999984
No 316
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.73 E-value=4.4 Score=44.40 Aligned_cols=190 Identities=17% Similarity=0.121 Sum_probs=113.9
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 500 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALES 579 (754)
Q Consensus 500 Al~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P 579 (754)
....|++.++-+|++..+|..+....-.+-....-. ....++ -.+..+.-|++||+-+|
T Consensus 4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~--------------~~~~~a-------~~E~klsilerAL~~np 62 (321)
T PF08424_consen 4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSS--------------KAERRA-------LAERKLSILERALKHNP 62 (321)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccc--------------hhhHHH-------HHHHHHHHHHHHHHhCC
Confidence 345788888999999988888776555443211111 001111 13556778889999999
Q ss_pred CccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcC-----
Q 004426 580 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN----- 654 (754)
Q Consensus 580 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg----- 654 (754)
++ ..-+++.+....+.|+.-. -..-.++++..+|++..+| ++.+-..++
T Consensus 63 ~~--------~~L~l~~l~~~~~~~~~~~----------------l~~~we~~l~~~~~~~~LW--~~yL~~~q~~~~~f 116 (321)
T PF08424_consen 63 DS--------ERLLLGYLEEGEKVWDSEK----------------LAKKWEELLFKNPGSPELW--REYLDFRQSNFASF 116 (321)
T ss_pred CC--------HHHHHHHHHHHHHhCCHHH----------------HHHHHHHHHHHCCCChHHH--HHHHHHHHHHhccC
Confidence 76 2333333444444443331 1336899999999999998 555666655
Q ss_pred CHHHHHHHHHHHHhcCCCc------------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 004426 655 CQKAAMRCLRLARNHSSSE------------------HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 716 (754)
Q Consensus 655 ~~eeAl~~~~~Al~l~P~~------------------~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~ 716 (754)
.+.+-...|.++++.-..- .+.+..+..-+.+.|+.+.|++.+.-.++++= |
T Consensus 117 ~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~-----~----- 186 (321)
T PF08424_consen 117 TVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF-----F----- 186 (321)
T ss_pred cHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc-----C-----
Confidence 3556666666666543221 23344555557788999999999998888641 1
Q ss_pred hhccCCCCCchhHHHHHHHHHhcCCCCCccccc
Q 004426 717 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQ 749 (754)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (754)
.-.+++....+..+..+|+=-- |+..|-|+
T Consensus 187 -~P~~~~~~~~~~~~~~fe~FWe--S~vpRiGE 216 (321)
T PF08424_consen 187 -RPESLSSSSFSERLESFEEFWE--SEVPRIGE 216 (321)
T ss_pred -CccccccccHHHHHHHHHHHhC--cCCCCCCC
Confidence 1123333333366666665443 35555554
No 317
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.43 E-value=0.78 Score=52.72 Aligned_cols=120 Identities=15% Similarity=0.070 Sum_probs=94.3
Q ss_pred HHHHHcCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhcc
Q 004426 539 DRIIVFKLSVDCLELRA-WLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRW 617 (754)
Q Consensus 539 ~rAl~l~p~~~~~~~ra-~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~ 617 (754)
..+++-+|....+++.+ .-....|+.-+|+.++..++-+.|+. +
T Consensus 203 ~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h-------------------------~---------- 247 (886)
T KOG4507|consen 203 HEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRH-------------------------N---------- 247 (886)
T ss_pred HHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcc-------------------------c----------
Confidence 44555556433333333 34567788888888888888888864 1
Q ss_pred ccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q 004426 618 SSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRA 697 (754)
Q Consensus 618 ~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~ 697 (754)
.| ..+..+|.+|.|+|+-.+|--++..|+...|.-++-+|.+|.++..+|.|--.+..|
T Consensus 248 ---kd------------------i~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~y 306 (886)
T KOG4507|consen 248 ---KD------------------IALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYNHSVLCY 306 (886)
T ss_pred ---cc------------------chhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHHhhhhhhhhhh
Confidence 11 235568889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChH-HHHHHH
Q 004426 698 EKSISIERTFE-AFFLKA 714 (754)
Q Consensus 698 e~Ai~l~~~~~-a~~~~~ 714 (754)
..|....|+|+ +|=-|+
T Consensus 307 dha~k~~p~f~q~~~q~~ 324 (886)
T KOG4507|consen 307 DHALQARPGFEQAIKQRK 324 (886)
T ss_pred hhhhccCcchhHHHHHHH
Confidence 99999999999 654443
No 318
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.27 E-value=7 Score=40.91 Aligned_cols=166 Identities=10% Similarity=-0.042 Sum_probs=95.2
Q ss_pred hhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhh-cchhh-------hhhHHHHHHHhCCHHHHHHHHHHHHHcc---
Q 004426 413 TERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA-GHIYS-------LAGLARAKYKVGQQYSAYKLINSIISEH--- 481 (754)
Q Consensus 413 ~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~-~~~~a-------~~~larv~~~~G~~~~A~~~~~~aI~~~--- 481 (754)
+++...+..|..-++.+-..+++++|..++.+|++- ....+ +-+.+-+.-....+-++...+++++.++
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 444344455666666677777888888888777754 11112 2222233334455666677777776654
Q ss_pred --CCCHHHHHHhh-h---cCChhhHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C
Q 004426 482 --KPTGWMYQERS-L---YNLGREKIVDLNYASELDPTL------SFPYKYRAVAKMEEGQIRAAISEIDRIIVF----K 545 (754)
Q Consensus 482 --~~~g~ay~~r~-~---y~~g~eAl~dl~kAi~LdP~~------~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l----~ 545 (754)
|+-+.|-..+. . ....++|+.-|.++.++=-.. .+-|...+.+|++++++.||-..+.|-..+ +
T Consensus 105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~ 184 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD 184 (308)
T ss_pred CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh
Confidence 33333333332 1 122366777676665542222 345566778888888888887776665443 2
Q ss_pred C--CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 546 L--SV-DCLELRAWLFIAADDYESALRDTLALLALE 578 (754)
Q Consensus 546 p--~~-~~~~~ra~~~~~lgd~~~Al~d~~~al~l~ 578 (754)
. +. ..+...-.+++...||..|...|+..-.+.
T Consensus 185 ~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 185 AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 2 11 122334456777778888888887766553
No 319
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=91.23 E-value=2.7 Score=45.64 Aligned_cols=127 Identities=17% Similarity=0.085 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcC-CCHHHHH-HHHHH-----HHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhcc
Q 004426 531 IRAAISEIDRIIVFK-LSVDCLE-LRAWL-----FIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRS 603 (754)
Q Consensus 531 ~~eAl~~~~rAl~l~-p~~~~~~-~ra~~-----~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~ 603 (754)
+++++.-++||+... |.|..+. ..+.+ .-..-||..-...|+....+.|+-.--.+|.-+.....-.
T Consensus 272 I~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp------ 345 (415)
T COG4941 272 IDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGP------ 345 (415)
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhH------
Confidence 577888888888774 3432111 11111 3456688888999999999999865444444443322111
Q ss_pred ccchhhhhhhhhccccccccchHHHHHHHHHc--CCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q 004426 604 WSPADCWIKLYDRWSSVDDIGSLAVINQMLIN--DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEG 681 (754)
Q Consensus 604 ~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l--~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G 681 (754)
..+|+.++...+- =-++-.+|--+|.+|.++|+.+||-..|++|+.+.++.+++.+-++
T Consensus 346 -------------------~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 346 -------------------AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred -------------------HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 1135555544443 2344456778999999999999999999999999999999876654
Q ss_pred H
Q 004426 682 W 682 (754)
Q Consensus 682 ~ 682 (754)
-
T Consensus 407 r 407 (415)
T COG4941 407 R 407 (415)
T ss_pred H
Confidence 3
No 320
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.18 E-value=40 Score=40.34 Aligned_cols=178 Identities=13% Similarity=0.012 Sum_probs=101.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHcCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHh-cCCC
Q 004426 514 LSFPYKYRAVAKMEEGQIRAAISEID--------RIIVFKLSVDCL----ELRAWLFIAADDYESALRDTLALLA-LESN 580 (754)
Q Consensus 514 ~~~ay~~rg~~l~~lg~~~eAl~~~~--------rAl~l~p~~~~~----~~ra~~~~~lgd~~~Al~d~~~al~-l~P~ 580 (754)
.+..++-.|..++..|+.+.|+..|. .+....+..+.+ .++..++...+.-.+-..+...+++ ++|.
T Consensus 403 ~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~ 482 (608)
T PF10345_consen 403 YPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPL 482 (608)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCcc
Confidence 47778889999999999999999998 555555544432 3466777766665544445666666 6663
Q ss_pred cc--c-cccchhhhHHHHHHhhhhc-cccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCH
Q 004426 581 YM--M-FHGRVSGDHLVKLLNHHVR-SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 656 (754)
Q Consensus 581 ~~--~-~~~~~~~~~~~~~l~~~~~-~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~ 656 (754)
.. + -+.+++.......+..... ...++. ..+-+ ++..+.+++.+.---.-+.+-+|..+. .|..
T Consensus 483 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k--~~l~~---------~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~ 550 (608)
T PF10345_consen 483 CSNSPNSYNRTAYCLVLATYNTFEPFSSNEAK--RHLQE---------ALKMANNKLGNSQLLAILLNLMGHRLF-EGDV 550 (608)
T ss_pred ccCCccHHHHHHHHHHHHHHhhCCccccHHHH--HHHHH---------HHHHHHHhhccchHHHHHHHHHHHHHH-cCCH
Confidence 21 1 1222222222111111100 011111 01111 122232333333333344556666666 7889
Q ss_pred HHHHHHHHHHHhcCCCc---hhHHH---HHHHH---HHHcCCHHHHHHHHHHHHhc
Q 004426 657 KAAMRCLRLARNHSSSE---HERLV---YEGWI---LYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 657 eeAl~~~~~Al~l~P~~---~ea~~---~~G~~---ly~~G~~eeAl~~~e~Ai~l 703 (754)
+|......+++.+.... ...+| +.|.+ +-..|+.++|-...++...+
T Consensus 551 ~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 551 GEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 88888887787766555 88887 44443 44679999998888776553
No 321
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.15 E-value=0.64 Score=49.18 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 004426 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI 683 (754)
Q Consensus 626 l~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ 683 (754)
+.+.+|.|.++|.++.-+--+|.++.++||++-|+.++...+++-|+++++-.-++..
T Consensus 201 l~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 201 LRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 7788889999999998888899999999998889999999999999988876555443
No 322
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.86 E-value=34 Score=38.95 Aligned_cols=69 Identities=16% Similarity=0.056 Sum_probs=51.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHhh
Q 004426 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 718 (754)
Q Consensus 649 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~ 718 (754)
-|.-.|.+.++.-...=..+++| ++.++.-+|.+++...+|+|||..+..----++-.++---||.+|-
T Consensus 471 yLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~lC 539 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKALALC 539 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 34556888888888888889999 8999999999999999999999776543222222235555666653
No 323
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.73 E-value=0.44 Score=34.57 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004426 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVF 544 (754)
Q Consensus 515 ~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l 544 (754)
+.++.++|.+|..+|++++|+..+.+++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 346778888888888888888888888765
No 324
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.64 E-value=19 Score=44.57 Aligned_cols=184 Identities=16% Similarity=0.073 Sum_probs=122.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccc-----ccc
Q 004426 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL--ESNYMM-----FHG 586 (754)
Q Consensus 514 ~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l--~P~~~~-----~~~ 586 (754)
-+..|..+|.+..+.|...+|++.|-||= +|+ .+..--.+-.+.|.|++-++.+.-|-+- +|. +. ++.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikad--Dps--~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~-id~eLi~AyA 1177 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPS--NYLEVIDVASRTGKYEDLVKYLLMARKKVREPY-IDSELIFAYA 1177 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-chHHHHHHHH
Confidence 46789999999999999999999998875 664 2333345567889999999988877763 232 11 111
Q ss_pred chhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHH
Q 004426 587 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA 666 (754)
Q Consensus 587 ~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~A 666 (754)
+ .+.++.++...--..-|+ .-+++|+.-.-+-++|...+.-.+. -|-.++..|..+|.++.|....|+|
T Consensus 1178 k---t~rl~elE~fi~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~vS-------N~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1178 K---TNRLTELEEFIAGPNVAN-IQQVGDRCFEEKMYEAAKLLYSNVS-------NFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred H---hchHHHHHHHhcCCCchh-HHHHhHHHhhhhhhHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1 122233333333344443 2456666555566665555554443 4888999999999999999999887
Q ss_pred HhcCC-------------------------CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 004426 667 RNHSS-------------------------SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLK 713 (754)
Q Consensus 667 l~l~P-------------------------~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~ 713 (754)
-.... -+++-+--+-..+.+-|.|+|-+...|-++.+.|---.+|-.
T Consensus 1247 ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTE 1318 (1666)
T KOG0985|consen 1247 NSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTE 1318 (1666)
T ss_pred cchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHH
Confidence 43221 023334444445666799999999999999999987766643
No 325
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.60 E-value=0.32 Score=32.42 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 675 ERLVYEGWILYDTGHREEALSRAEK 699 (754)
Q Consensus 675 ea~~~~G~~ly~~G~~eeAl~~~e~ 699 (754)
.+++++|++++.+|+.++|.+.+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4567777777777777777766653
No 326
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.34 E-value=0.84 Score=40.45 Aligned_cols=57 Identities=25% Similarity=0.197 Sum_probs=44.3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCc---------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004426 651 LRLNCQKAAMRCLRLARNHSSSE---------HERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (754)
Q Consensus 651 ~~lg~~eeAl~~~~~Al~l~P~~---------~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~ 707 (754)
.+.|++.+|++.+.+.+...... ..++.++|.+.+..|++++|+..+++||++-+..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 56788888877777776554332 4678889999999999999999999999885443
No 327
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=90.16 E-value=1.6 Score=40.00 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=17.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHccCCC
Q 004426 458 ARAKYKVGQQYSAYKLINSIISEHKPT 484 (754)
Q Consensus 458 arv~~~~G~~~~A~~~~~~aI~~~~~~ 484 (754)
+..++.+|++-.|.+.++..|..+.+.
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~ 29 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGED 29 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCC
Confidence 445666777777777777777766543
No 328
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.05 E-value=7.3 Score=38.21 Aligned_cols=70 Identities=17% Similarity=0.129 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q 004426 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRA 697 (754)
Q Consensus 626 l~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~ 697 (754)
...++..-.+.|+.+++-+--|.++...|++.+|++.++.+.+-.|..+.+---+++||+.+|+. .|..|
T Consensus 30 e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~--~Wr~~ 99 (160)
T PF09613_consen 30 EALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP--SWRRY 99 (160)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh--HHHHH
Confidence 55777777888999999999999999999999999999998888888888888889999888875 46655
No 329
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.72 E-value=2.2 Score=48.23 Aligned_cols=139 Identities=17% Similarity=0.164 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCccccccchhhhHH
Q 004426 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLAL-LALESNYMMFHGRVSGDHL 593 (754)
Q Consensus 516 ~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~a-l~l~P~~~~~~~~~~~~~~ 593 (754)
.-|.-|+. ..+.+..-+.-....+.-+.-+ +..+.....+++..|++..|.+.+... +.-.|..
T Consensus 209 ~~ykVr~l--lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~------------ 274 (696)
T KOG2471|consen 209 QLYKVRFL--LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGG------------ 274 (696)
T ss_pred hHhhHHHH--HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCc------------
Confidence 33444554 5566777788888887766654 666777788888888888877654322 1111111
Q ss_pred HHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCC--ChhHHHhHHHHHHHcCCHHHHHHHHHHHHh---
Q 004426 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG--KSFLRFRQSLLLLRLNCQKAAMRCLRLARN--- 668 (754)
Q Consensus 594 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~--~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~--- 668 (754)
-+.|. .-.+|+|+|-+..++|++..+.-.|.+|++
T Consensus 275 ----------------------------------------~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 275 ----------------------------------------TITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred ----------------------------------------cccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence 01111 235688999999999999999999999996
Q ss_pred ------cC---------CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 669 ------HS---------SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 669 ------l~---------P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
+. ...-+.+||.|..++..|+--+|.+.+-+|...=....
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP 369 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP 369 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc
Confidence 12 23678999999999999999999999999998744443
No 330
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.64 E-value=2.9 Score=40.94 Aligned_cols=65 Identities=20% Similarity=0.204 Sum_probs=57.7
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 644 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
+....+=.+.+..+++...++...-+.|..++.....||++...|++++|+..++...+-.|.+.
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 33444445678999999999999999999999999999999999999999999999988888776
No 331
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=89.55 E-value=0.18 Score=54.82 Aligned_cols=140 Identities=14% Similarity=0.105 Sum_probs=111.7
Q ss_pred EEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCC-CChhHHHHHHHHh
Q 004426 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL-FCPGIVLELLSFA 298 (754)
Q Consensus 220 V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~-i~~~~vlelL~aA 298 (754)
++.......+++|+.+|...|+.|..+....-.-+....+.+ .+++...+..+..++|.. ++. --....+.++.+.
T Consensus 29 ~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~ 105 (319)
T KOG1778|consen 29 EIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKI--LGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALS 105 (319)
T ss_pred hhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhccee--ecccccccchhhhhhccc-hhhhHHHHHHHHHHhhh
Confidence 444455678999999999999999988766522223345666 788899999999999988 542 1123466777777
Q ss_pred chhChhhHHHHHHHHHHh-hcCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCchhhhhh
Q 004426 299 NRFCCEEMKSACDAHLAS-LVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 363 (754)
Q Consensus 299 ~~f~l~~Lk~~Ce~~L~~-~i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~e~f~~L 363 (754)
..+.++.++.-|...+.. .++ ..|++..+..+..+....|..++...|...|.....++.....
T Consensus 106 ~~~~v~~~~~d~~~~~~~~~~~-~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~ 170 (319)
T KOG1778|consen 106 HVYVVPQPKADCDPILECGLFD-KRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAY 170 (319)
T ss_pred hhhhccCccccCCccccchhhh-hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceee
Confidence 889999999999998887 555 7999999999999999999999999999999988887666554
No 332
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.49 E-value=1.2 Score=38.39 Aligned_cols=64 Identities=20% Similarity=0.273 Sum_probs=54.6
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH---HHHcCCHHHHHHHHHHHHhcCC
Q 004426 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI---LYDTGHREEALSRAEKSISIER 705 (754)
Q Consensus 642 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~---ly~~G~~eeAl~~~e~Ai~l~~ 705 (754)
-+..+|+=|...+..++|++..++|++..++..+.+..+|++ +.+.|+|++.++..-+=+.+..
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677778899999999999999999999999999888875 7889999999988777666543
No 333
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=88.75 E-value=11 Score=42.17 Aligned_cols=157 Identities=15% Similarity=0.051 Sum_probs=101.9
Q ss_pred HHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------c-----CCC-------HHHHHHHH---------
Q 004426 506 YASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV---------F-----KLS-------VDCLELRA--------- 555 (754)
Q Consensus 506 kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~---------l-----~p~-------~~~~~~ra--------- 555 (754)
..+.-+|-+.+.+..++.++..+|+++.|-+-++|||= + ++. .....||.
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 34688999999999999999999999999999999962 2 211 01112333
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHc
Q 004426 556 WLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN 635 (754)
Q Consensus 556 ~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l 635 (754)
..+.+.|-+.-|+....-.+.|||..-++ ++.....-..-.-++ .+-++.+++.+... ...+.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~----g~ll~ID~~ALrs~~---y~~Li~~~~~~~~~-------~~~~~~~~ 176 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPL----GVLLFIDYYALRSRQ---YQWLIDFSESPLAK-------CYRNWLSL 176 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcc----hhHHHHHHHHHhcCC---HHHHHHHHHhHhhh-------hhhhhhhh
Confidence 35889999999999999999999983322 222222211111122 22223333321111 01111222
Q ss_pred CCCChhHHHhHHHHHHHcCCH---------------HHHHHHHHHHHhcCCCchhHHHH
Q 004426 636 DPGKSFLRFRQSLLLLRLNCQ---------------KAAMRCLRLARNHSSSEHERLVY 679 (754)
Q Consensus 636 ~P~~~~~~~~~g~~L~~lg~~---------------eeAl~~~~~Al~l~P~~~ea~~~ 679 (754)
-|..-|..++++..+++. ++|-..+++|+..-|.-.-.+..
T Consensus 177 ---lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~ 232 (360)
T PF04910_consen 177 ---LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLD 232 (360)
T ss_pred ---CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 235678889999999999 89999999999998875544443
No 334
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=88.55 E-value=1.6 Score=46.31 Aligned_cols=69 Identities=17% Similarity=0.055 Sum_probs=61.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHH
Q 004426 646 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKA 714 (754)
Q Consensus 646 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~ 714 (754)
.=..+.+-++++.|.++.++.+.++|.+++-+.-+|.+++++|.+.-|+..++..++.-|+-. +=.+|+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 444677889999999999999999999999999999999999999999999999999888876 555554
No 335
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.55 E-value=0.72 Score=34.00 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004426 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVF 544 (754)
Q Consensus 516 ~ay~~rg~~l~~lg~~~eAl~~~~rAl~l 544 (754)
+.|..+|.+-++.++|++|+.||.++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666777777777777777777777765
No 336
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=88.41 E-value=2.9 Score=39.73 Aligned_cols=80 Identities=19% Similarity=0.162 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHc---CCHHHHHHHHHHHHH-cCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccch
Q 004426 515 SFPYKYRAVAKMEE---GQIRAAISEIDRIIV-FKLS--VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 588 (754)
Q Consensus 515 ~~ay~~rg~~l~~l---g~~~eAl~~~~rAl~-l~p~--~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~ 588 (754)
.+..+++|-++... .+.++.|..+...++ -.|. -++.|..+..+.++|+|+.|++.++..++.+|++ .
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n------~ 105 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN------R 105 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc------H
Confidence 35567777788775 447789999999996 4553 5788999999999999999999999999999998 5
Q ss_pred hhhHHHHHHhhh
Q 004426 589 SGDHLVKLLNHH 600 (754)
Q Consensus 589 ~~~~~~~~l~~~ 600 (754)
.+..+...+...
T Consensus 106 Qa~~Lk~~ied~ 117 (149)
T KOG3364|consen 106 QALELKETIEDK 117 (149)
T ss_pred HHHHHHHHHHHH
Confidence 566665555443
No 337
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.15 E-value=3.4 Score=44.24 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=74.8
Q ss_pred ChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHhh
Q 004426 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 718 (754)
Q Consensus 639 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~ 718 (754)
...++..++..+...|+.+++...+++-++.+|-+-.++..+=-.++..|+...|+..|++.-.. -..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~------------~~e 219 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT------------LAE 219 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH------------hhh
Confidence 34456668888889999999999999999999999999999999999999999999999987665 223
Q ss_pred ccCCCCCchhHHHHHHHHHhcCCC
Q 004426 719 DTNLDPESSTYVIQLLEEALRCPS 742 (754)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~ 742 (754)
|.++|| +..+-.+.+++++||-
T Consensus 220 dlgi~P--~~~~~~~y~~~~~~~~ 241 (280)
T COG3629 220 ELGIDP--APELRALYEEILRQDP 241 (280)
T ss_pred hcCCCc--cHHHHHHHHHHhcccc
Confidence 444444 6788888888888864
No 338
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=87.83 E-value=2.5 Score=41.25 Aligned_cols=103 Identities=9% Similarity=-0.078 Sum_probs=77.4
Q ss_pred CCCCCCc-EEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCc----ceEEecCCCCCHHHHHHHHHHhhcCCCCCCC
Q 004426 213 SLEEDDS-VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKR----KTIDFSHDGVSVEGLRAVEVYTRTSRVDLFC 287 (754)
Q Consensus 213 ~~~~~~~-V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~----~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~ 287 (754)
+....+. |.|-|||..|-.-|.-|.--+.-|..-|...-.+... .---+ -|-+|.-|-.||+|+..|++. ++
T Consensus 15 ~~~g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYl--IDRDP~~FgpvLNylRhgklv-l~ 91 (210)
T KOG2715|consen 15 NGNGVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYL--IDRDPFYFGPVLNYLRHGKLV-LN 91 (210)
T ss_pred cCCCceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceE--eccCcchHHHHHHHHhcchhh-hh
Confidence 3344455 9999999999999999988887888777654333221 12233 366899999999999999998 76
Q ss_pred hhHHHHHHHHhchhChhhHHHHHHHHHHhhc
Q 004426 288 PGIVLELLSFANRFCCEEMKSACDAHLASLV 318 (754)
Q Consensus 288 ~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i 318 (754)
.-.=..+|.-|.+|.++.|.+.-.+.+.+..
T Consensus 92 ~l~eeGvL~EAefyn~~~li~likd~i~dRd 122 (210)
T KOG2715|consen 92 KLSEEGVLEEAEFYNDPSLIQLIKDRIQDRD 122 (210)
T ss_pred hhhhhccchhhhccCChHHHHHHHHHHHHHh
Confidence 6445568889999999999888777666544
No 339
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=87.36 E-value=3 Score=38.93 Aligned_cols=96 Identities=18% Similarity=0.141 Sum_probs=68.8
Q ss_pred EEEE-ECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCC-------------
Q 004426 220 VTFC-VRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL------------- 285 (754)
Q Consensus 220 V~f~-V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~------------- 285 (754)
|.++ .+|+.|...+. +|-+|=-.+.|+... .+.. -.|.. ++|...+|+.+++|+-..+-..
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d~-~~~n-~p~p~--pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~ 78 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCDS-TACN-YPIPA--PNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSK 78 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhccc-cccC-CCCcc--cchhHHHHHHHHHHHHhccccCCCccChHhhhccC
Confidence 4444 46777777664 467787788888542 2222 23555 8999999999999986543221
Q ss_pred -----------CChhHHHHHHHHhchhChhhHHHHHHHHHHhhcCC
Q 004426 286 -----------FCPGIVLELLSFANRFCCEEMKSACDAHLASLVGD 320 (754)
Q Consensus 286 -----------i~~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~ 320 (754)
++.+.++++.-+||++.++-|.+.|+..+...+.+
T Consensus 79 p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirg 124 (158)
T COG5201 79 PSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRG 124 (158)
T ss_pred CccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHcc
Confidence 23456889999999999999999999988887763
No 340
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.34 E-value=0.77 Score=33.85 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 674 HERLVYEGWILYDTGHREEALSRAEKSISIER 705 (754)
Q Consensus 674 ~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~ 705 (754)
++.|.-+|-+-...++|++|+..|++|++|+.
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999998853
No 341
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=87.28 E-value=1.5 Score=37.56 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=36.2
Q ss_pred CChhHHHHHHHHhchhChhhHHHHHHHHHHhhcCC--HhhHHHHHHHhhhhc
Q 004426 286 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVGD--IEDALILIDYGLEER 335 (754)
Q Consensus 286 i~~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~--~~n~l~il~~A~~~~ 335 (754)
++.+.+++|+.+|++++++.|...|+..+...+.+ ++.+..++.+...+.
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t 62 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLT 62 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSS
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCC
Confidence 46789999999999999999999999999998863 455555555544443
No 342
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=86.15 E-value=1.3 Score=48.27 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=62.2
Q ss_pred EEEEE-CCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHh
Q 004426 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFA 298 (754)
Q Consensus 220 V~f~V-~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~vlelL~aA 298 (754)
++|.+ +|+.|-|||..|++||.+|..-+..-+. ...+|+= ..+-+.+|..++.|+|-..-. +-++.--+|++..
T Consensus 152 i~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~--~~v~~~~f~~flk~lyl~~na-~~~~qynallsi~ 226 (516)
T KOG0511|consen 152 IDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEA--HRVILSAFSPFLKQLYLNTNA-EWKDQYNALLSIE 226 (516)
T ss_pred hHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhh--hhhhHhhhhHHHHHHHHhhhh-hhhhHHHHHHhhh
Confidence 77766 6888999999999999988654433221 1235544 467889999999999976333 4445558899999
Q ss_pred chhChhhHHHH
Q 004426 299 NRFCCEEMKSA 309 (754)
Q Consensus 299 ~~f~l~~Lk~~ 309 (754)
.+|+++.|...
T Consensus 227 ~kF~~e~l~~~ 237 (516)
T KOG0511|consen 227 VKFSKEKLSLE 237 (516)
T ss_pred hhccHHHhHHH
Confidence 99999877644
No 343
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=86.13 E-value=0.64 Score=50.60 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 004426 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL 684 (754)
Q Consensus 626 l~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~l 684 (754)
+-.-.-+++.++....+|++++..+..+.++++|++++..|...+|++....--+-.+-
T Consensus 295 ~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 295 RFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred eeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 44445566688888888888888888888888888888888888888776554443333
No 344
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=85.95 E-value=5.2 Score=45.62 Aligned_cols=83 Identities=6% Similarity=-0.007 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC
Q 004426 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH-REEALSRAEKSISIE 704 (754)
Q Consensus 626 l~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~-~eeAl~~~e~Ai~l~ 704 (754)
+..|++|+..-|+++.+|.+-..--.+-+-+.+--..|.+++...|++++..++-+.-+|.-+. ++.|-+.+-++++.+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 4478888888888888887776655566667777788888888888888888888877777776 888888888888888
Q ss_pred CChH
Q 004426 705 RTFE 708 (754)
Q Consensus 705 ~~~~ 708 (754)
|+.+
T Consensus 171 pdsp 174 (568)
T KOG2396|consen 171 PDSP 174 (568)
T ss_pred CCCh
Confidence 8876
No 345
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.26 E-value=42 Score=33.60 Aligned_cols=54 Identities=19% Similarity=0.124 Sum_probs=37.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCC-CHH-HHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 526 MEEGQIRAAISEIDRIIVFKL-SVD-CLELRA-WLFIAADDYESALRDTLALLALES 579 (754)
Q Consensus 526 ~~lg~~~eAl~~~~rAl~l~p-~~~-~~~~ra-~~~~~lgd~~~Al~d~~~al~l~P 579 (754)
.+.|+.++|++.|...-.-.- ++. ....|. .++.+.|+-++|+.+|+.+-.-.|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~ 125 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS 125 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC
Confidence 456778888888877765544 233 334444 478888888888888888877665
No 346
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.81 E-value=1.2 Score=29.63 Aligned_cols=26 Identities=27% Similarity=0.151 Sum_probs=22.8
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHH
Q 004426 640 SFLRFRQSLLLLRLNCQKAAMRCLRL 665 (754)
Q Consensus 640 ~~~~~~~g~~L~~lg~~eeAl~~~~~ 665 (754)
+.+++++|.++..+|++++|.+.+++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 35788999999999999999998763
No 347
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.56 E-value=5.3 Score=45.21 Aligned_cols=165 Identities=18% Similarity=0.138 Sum_probs=95.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhcccc
Q 004426 527 EEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWS 605 (754)
Q Consensus 527 ~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~ 605 (754)
..|+...|-.....++.-.|. |.....++.+...+|+|++|.+++.-+-..=.. | ..+.+-+..-..-+.+|+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s-----~-~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGT-----T-DSTLRCRLRSLHGLARWR 374 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcC-----C-chHHHHHHHhhhchhhHH
Confidence 357777788888888887774 676677888888888888888877654432211 0 123444444445556666
Q ss_pred chhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH-HHHHHHH-
Q 004426 606 PADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER-LVYEGWI- 683 (754)
Q Consensus 606 ~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea-~~~~G~~- 683 (754)
+| ++.-.-+|..+-.+++...--+..-..+|.+++|.-...+.+.++|..-.. -+.+...
T Consensus 375 ~a------------------~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~ 436 (831)
T PRK15180 375 EA------------------LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQ 436 (831)
T ss_pred HH------------------HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccce
Confidence 66 333333343333333333333333345688999999999999999864321 1112221
Q ss_pred HHHcC-CHHHHHHHHHHHHhcCCChHHHHHHHHHhh
Q 004426 684 LYDTG-HREEALSRAEKSISIERTFEAFFLKAYILA 718 (754)
Q Consensus 684 ly~~G-~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~ 718 (754)
++..| -|.||.. .-|.-|+-+..|.--|..|+
T Consensus 437 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 469 (831)
T PRK15180 437 YFNDGNAFSEAFH---AGIQSQRLNDTFMETALSLA 469 (831)
T ss_pred eccCcchHHHHHH---hhhhhhhhhHHHHHHHHHHH
Confidence 22223 2555543 33444555556666665555
No 348
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.28 E-value=19 Score=40.38 Aligned_cols=176 Identities=14% Similarity=0.120 Sum_probs=123.2
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL 577 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l 577 (754)
.++++.=.+.++-+|+....|+.|=.++.+..-.. +++|.-. +.-+++=+.....+++.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~----------~~~~~ek-----------~~~ld~eL~~~~~~L~~ 104 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRA----------QLEPLEK-----------QALLDEELKYVESALKV 104 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhh----------cCCHHHH-----------HHhhHHHHHHHHHHHHh
Confidence 55666667788889999999998877766432111 3334211 11356677778899999
Q ss_pred CCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccc--cccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcC
Q 004426 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSV--DDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLN 654 (754)
Q Consensus 578 ~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~--~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg 654 (754)
+|+.+ .+ |...-..+.+. .+++ -|..++++|+.||.|-++|..|=.+..+..
T Consensus 105 npksY------~a-------------------W~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~ 159 (421)
T KOG0529|consen 105 NPKSY------GA-------------------WHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAE 159 (421)
T ss_pred CchhH------HH-------------------HHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHh
Confidence 99863 12 22222222211 2233 488999999999999999998888877755
Q ss_pred CH----HHHHHHHHHHHhcCCCchhHHHHHHHHHHH------cC------CHHHHHHHHHHHHhcCCChH-HHHHHHHHh
Q 004426 655 CQ----KAAMRCLRLARNHSSSEHERLVYEGWILYD------TG------HREEALSRAEKSISIERTFE-AFFLKAYIL 717 (754)
Q Consensus 655 ~~----eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~------~G------~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~ 717 (754)
+. .+=++...+++.-++.|=.|..||.+++-. .| .....+..=..||--+|+.- ++|. =.-|
T Consensus 160 ~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY-~rWL 238 (421)
T KOG0529|consen 160 RSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY-HRWL 238 (421)
T ss_pred cccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee-hHHh
Confidence 54 667888899999999999999999999883 35 36677888888998899887 7766 3344
Q ss_pred hcc
Q 004426 718 ADT 720 (754)
Q Consensus 718 ~~~ 720 (754)
-+.
T Consensus 239 l~~ 241 (421)
T KOG0529|consen 239 LGR 241 (421)
T ss_pred hcc
Confidence 444
No 349
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=83.92 E-value=23 Score=36.56 Aligned_cols=96 Identities=20% Similarity=0.150 Sum_probs=59.4
Q ss_pred cCCHHHHHHHHHHHHHc------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhh
Q 004426 528 EGQIRAAISEIDRIIVF------KLS--VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNH 599 (754)
Q Consensus 528 lg~~~eAl~~~~rAl~l------~p~--~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~ 599 (754)
...+++|++.|.-||-- +|. ...+...+|+|..+|+.+.....+++|++.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~---------------------- 147 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEF---------------------- 147 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH----------------------
Confidence 34566777777666643 222 222344678999999976666666655543
Q ss_pred hhccccchhhhhhhhhccccccccchHHHHHHHHHcCCC--C----hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 600 HVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG--K----SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (754)
Q Consensus 600 ~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~--~----~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 673 (754)
|.++++.+.. . ..+.+..|++..++|++++|++.+.+.+...-.+
T Consensus 148 -----------------------------y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 148 -----------------------------YEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred -----------------------------HHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 2222222211 1 2356678888888888888888888888766554
Q ss_pred h
Q 004426 674 H 674 (754)
Q Consensus 674 ~ 674 (754)
.
T Consensus 199 ~ 199 (214)
T PF09986_consen 199 K 199 (214)
T ss_pred C
Confidence 4
No 350
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.51 E-value=5 Score=38.85 Aligned_cols=64 Identities=17% Similarity=0.142 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC
Q 004426 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH 689 (754)
Q Consensus 626 l~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~ 689 (754)
-.+++.+--+.|+.++...--|.++...|++.||++.++...+-.|..+.+---+++||+-+|+
T Consensus 30 e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 30 QAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 3344444445555555555555555555555555555555555555555444555555555554
No 351
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=82.59 E-value=7.4 Score=43.52 Aligned_cols=103 Identities=12% Similarity=-0.008 Sum_probs=55.3
Q ss_pred hhhHhhccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCH-HH-H--HHHHHHHHHccCCCHHHHHHhhhcCChhhHH
Q 004426 426 GCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQ-YS-A--YKLINSIISEHKPTGWMYQERSLYNLGREKI 501 (754)
Q Consensus 426 G~v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~-~~-A--~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl 501 (754)
+...+.+|+|..|..-|..|+++=... ...|+. +. + +....+.| .+.+...|...+.- +-|+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg---------~a~~k~~~~~~~di~~vaSfI--etklv~CYL~~rkp---dlAL 248 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKG---------AALSKPFKASAEDISSVASFI--ETKLVTCYLRMRKP---DLAL 248 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhh---------hhccCCCCCChhhHHHHHHHH--HHHHHHhhhhcCCC---chHH
Confidence 555666777777777777777751110 011221 10 1 11111111 22333444433222 5566
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 502 VDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRII 542 (754)
Q Consensus 502 ~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl 542 (754)
..--+-|.++|...-.+..+|.+...+.||.||-..+--|.
T Consensus 249 nh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 249 NHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777777777777777777766555444
No 352
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.28 E-value=78 Score=36.46 Aligned_cols=139 Identities=13% Similarity=0.111 Sum_probs=94.4
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhhcc-----hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhh
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGH-----IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL 493 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~-----~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~ 493 (754)
+.-++.+|.--...+.|++|+..|..|.+..+ .....++|.+|...|+-+.-++..+..-..+.. .+..
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~---s~ss--- 440 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTN---SLSS--- 440 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCC---cchH---
Confidence 34467788888888899999999999998843 235667788888888765443333322222211 1100
Q ss_pred cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHH-------HHHHHHHHHHHcCCHHH
Q 004426 494 YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD-------CLELRAWLFIAADDYES 566 (754)
Q Consensus 494 y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~-------~~~~ra~~~~~lgd~~~ 566 (754)
..+ -+..++-.|...+.++++.||-.-.++.++..-.-+ .+...+.+...+|+-.+
T Consensus 441 ------------q~l-----~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~e 503 (629)
T KOG2300|consen 441 ------------QRL-----EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVE 503 (629)
T ss_pred ------------HHH-----HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 001 123566788888999999999999999998753111 13446678899999999
Q ss_pred HHHHHHHHHhcCCC
Q 004426 567 ALRDTLALLALESN 580 (754)
Q Consensus 567 Al~d~~~al~l~P~ 580 (754)
+..-.+-+..+..+
T Consensus 504 s~nmvrpamqlAkK 517 (629)
T KOG2300|consen 504 SRNMVRPAMQLAKK 517 (629)
T ss_pred HHhccchHHHHHhc
Confidence 99988888887754
No 353
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.21 E-value=10 Score=36.70 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=53.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 653 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
.+.+.++...+....-+.|+.++.....||++..-|+++||+..+++..+-.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence 79999999999999999999999999999999999999999999999999888866
No 354
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=81.93 E-value=71 Score=38.39 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=15.2
Q ss_pred CCCCCcchhhHHHHHHHHHH
Q 004426 77 IDPHLKPIHCVKSLADLYRR 96 (754)
Q Consensus 77 ~~p~~~~~~~~~~l~~~~~~ 96 (754)
..||+-+|-..+.-...|.|
T Consensus 246 ~nphlisvqike~~qksygr 265 (1636)
T KOG3616|consen 246 MNPHLISVQIKEACQKSYGR 265 (1636)
T ss_pred cCceeeehHHHHHHHHhhCC
Confidence 46888888888877777765
No 355
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.89 E-value=69 Score=34.14 Aligned_cols=165 Identities=12% Similarity=0.025 Sum_probs=102.8
Q ss_pred HHcCCHHHHHHHHHHHHHcC----CC-H----HHHHHHHHHHHHcC-CHHHHHHHHHHHHhc----CCCccccccchhhh
Q 004426 526 MEEGQIRAAISEIDRIIVFK----LS-V----DCLELRAWLFIAAD-DYESALRDTLALLAL----ESNYMMFHGRVSGD 591 (754)
Q Consensus 526 ~~lg~~~eAl~~~~rAl~l~----p~-~----~~~~~ra~~~~~lg-d~~~Al~d~~~al~l----~P~~~~~~~~~~~~ 591 (754)
.++|+++-|...+.|+=.+. |+ . ..+|+-|.-....+ ++++|+..+++|.++ .+.... .....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~---~~~~~ 80 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL---SPDGS 80 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc---CCcHH
Confidence 46789999999999987765 32 1 23566777788888 999999999999998 221110 01111
Q ss_pred HHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS 670 (754)
Q Consensus 592 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~ 670 (754)
.++..+ -..+++.|-.|...+... +...++.+-.--|+.+..++-+=.++.+.++.+++.+.+++++..-
T Consensus 81 elr~~i---------L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 81 ELRLSI---------LRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHH---------HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 111111 111223344444444444 5667777777779999999777778888999999999999999876
Q ss_pred C-CchhHHHHHHHH-HHHcCCHHHHHHHHHHHHh
Q 004426 671 S-SEHERLVYEGWI-LYDTGHREEALSRAEKSIS 702 (754)
Q Consensus 671 P-~~~ea~~~~G~~-ly~~G~~eeAl~~~e~Ai~ 702 (754)
+ .+..--...+.+ .+-.-....|...+.+.+.
T Consensus 152 ~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 152 DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLL 185 (278)
T ss_pred ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 5 222111112222 2222334567777777766
No 356
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=81.89 E-value=33 Score=35.89 Aligned_cols=194 Identities=16% Similarity=0.127 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--HHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHH
Q 004426 518 YKYRAVAKMEEGQIRAAISEIDRIIVFKLS--VDCLELRAWL-FIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 594 (754)
Q Consensus 518 y~~rg~~l~~lg~~~eAl~~~~rAl~l~p~--~~~~~~ra~~-~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~ 594 (754)
+.++|-+..+.|||++++....+++..+|+ .+--.....+ ....|..-.+.+-+....+-.... |+.......
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~----~~~~~~~~i 79 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK----GNEKQVKLI 79 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----TTHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc----chhHHHHHH
Confidence 567889999999999999999999999885 3333334433 234444444555444444433322 111111111
Q ss_pred HHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhH----HHhHHHHHHH-----c-----CCHHHHH
Q 004426 595 KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL----RFRQSLLLLR-----L-----NCQKAAM 660 (754)
Q Consensus 595 ~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~----~~~~g~~L~~-----l-----g~~eeAl 660 (754)
......++..=..-| .+ .+..++.-|--...+++. +-.+|..+-- . .-.+.|.
T Consensus 80 ~~yk~kie~EL~~~C-----------~e--ii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 146 (236)
T PF00244_consen 80 KDYKKKIEDELIDIC-----------NE--IIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKAL 146 (236)
T ss_dssp HHHHHHHHHHHHHHH-----------HH--HHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------HH--HHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHH
Confidence 111111100000000 00 022333322222222221 1112222111 1 1236788
Q ss_pred HHHHHHHh-----cCCCchhHH---HHHHHHHHH-cCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhccCCC--CCchhH
Q 004426 661 RCLRLARN-----HSSSEHERL---VYEGWILYD-TGHREEALSRAEKSISIERTFEAFFLKAYILADTNLD--PESSTY 729 (754)
Q Consensus 661 ~~~~~Al~-----l~P~~~ea~---~~~G~~ly~-~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~~~~~--~~~~~~ 729 (754)
..|++|+. +.|.++-.+ .|.+.-+|. +|+.++|++..++|+ -.|+.--|+-=| -..|..
T Consensus 147 ~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af----------d~a~~~l~~l~e~~~~d~~~ 216 (236)
T PF00244_consen 147 EAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF----------DEAISELDTLSEESYKDSTL 216 (236)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH----------HHHHHGGGGSHTTTHHHHHH
T ss_pred HhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH----------HHHHhhhcccchhhhHHHHH
Confidence 88888775 677777443 233333333 799999999999884 445544443111 223566
Q ss_pred HHHHHHHHh
Q 004426 730 VIQLLEEAL 738 (754)
Q Consensus 730 ~~~~~~~~~ 738 (754)
++|||-+=|
T Consensus 217 ilqlLrdNl 225 (236)
T PF00244_consen 217 ILQLLRDNL 225 (236)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887643
No 357
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=81.76 E-value=4.3 Score=42.71 Aligned_cols=61 Identities=16% Similarity=0.033 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhc
Q 004426 659 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILAD 719 (754)
Q Consensus 659 Al~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~ 719 (754)
|++.|++|+.+.|+++..++.+|.+....|+.=+|+=.|-||+...-.|. |.-+-.-.+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67778888888888888888888888888888888877888887644445 65555544444
No 358
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=80.58 E-value=7.2 Score=37.19 Aligned_cols=76 Identities=17% Similarity=0.119 Sum_probs=61.3
Q ss_pred ChhHHHhHHHHHHH---cCCHHHHHHHHHHHHh-cCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHH
Q 004426 639 KSFLRFRQSLLLLR---LNCQKAAMRCLRLARN-HSS-SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFL 712 (754)
Q Consensus 639 ~~~~~~~~g~~L~~---lg~~eeAl~~~~~Al~-l~P-~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~ 712 (754)
+....||.+.+|.+ ..+.++.+.+++..++ -.| ..-+-+||++...|++|+|++|+..-+.-++.+||+. |=-|
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 35678899999988 4556788999999986 333 3456789999999999999999999999999999987 5555
Q ss_pred HH
Q 004426 713 KA 714 (754)
Q Consensus 713 ~~ 714 (754)
|-
T Consensus 111 k~ 112 (149)
T KOG3364|consen 111 KE 112 (149)
T ss_pred HH
Confidence 53
No 359
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=79.33 E-value=82 Score=39.62 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=56.8
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHhhCCCCh---HHHHHHHHHHHHc-------CCHHHHHHHHHHHHHcCCC-HHHHHH
Q 004426 485 GWMYQERSLYNLGREKIVDLNYASELDPTLS---FPYKYRAVAKMEE-------GQIRAAISEIDRIIVFKLS-VDCLEL 553 (754)
Q Consensus 485 g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~---~ay~~rg~~l~~l-------g~~~eAl~~~~rAl~l~p~-~~~~~~ 553 (754)
+.++.+-.+| +.|+.-|++.-.-=|+-. +|.+..|.++.++ ..+++|+..|++.-. -|. |--|..
T Consensus 482 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 557 (932)
T PRK13184 482 PDAFLAEKLY---DQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLG 557 (932)
T ss_pred cHHHHhhHHH---HHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHh
Confidence 3444444444 455555555444444432 3445555555543 247778888877653 233 444455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 004426 554 RAWLFIAADDYESALRDTLALLALESNYM 582 (754)
Q Consensus 554 ra~~~~~lgd~~~Al~d~~~al~l~P~~~ 582 (754)
.|.+|..+|+|+|=+++|..|++.-|+..
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 67788888888888888888888888765
No 360
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.69 E-value=1.4e+02 Score=34.86 Aligned_cols=187 Identities=16% Similarity=0.088 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHH-HHH-HHHH--------HcCCHHHHHHHHHHH---HhcCCCccc
Q 004426 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLE-LRA-WLFI--------AADDYESALRDTLAL---LALESNYMM 583 (754)
Q Consensus 517 ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~-~ra-~~~~--------~lgd~~~Al~d~~~a---l~l~P~~~~ 583 (754)
-|+-||.+++-+.++..|-.++++....+--..++| .++ .++. ..|+-+.|-..++.. ++..|++.+
T Consensus 305 ~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P 384 (546)
T KOG3783|consen 305 MVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLP 384 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCc
Confidence 456778888888889999888888885543233332 233 3332 234455444444333 445566654
Q ss_pred ---cccchhhhHHHHHHhhhhccccchhh--hhhhhhccccccccc--hHHHHHHHHHc----CCCCh-hHHHhHHHHHH
Q 004426 584 ---FHGRVSGDHLVKLLNHHVRSWSPADC--WIKLYDRWSSVDDIG--SLAVINQMLIN----DPGKS-FLRFRQSLLLL 651 (754)
Q Consensus 584 ---~~~~~~~~~~~~~l~~~~~~~~~A~~--~~~l~~~~~~~~d~~--al~~~~~aL~l----~P~~~-~~~~~~g~~L~ 651 (754)
|.+|..-......-.. .....+ ...+...|....... .+.-++..++. |+.+. .-++-+|.+|-
T Consensus 385 ~E~f~~RKverf~~~~~~~----~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR 460 (546)
T KOG3783|consen 385 LEKFIVRKVERFVKRGPLN----ASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILR 460 (546)
T ss_pred hhHHHHHHHHHHhcccccc----ccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 3333332211111000 001111 123444555553333 33344444443 22222 23788999999
Q ss_pred HcCCHHHHHHHHHHHHhc---CCC----chhHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCh
Q 004426 652 RLNCQKAAMRCLRLARNH---SSS----EHERLVYEGWILYDTGH-REEALSRAEKSISIERTF 707 (754)
Q Consensus 652 ~lg~~eeAl~~~~~Al~l---~P~----~~ea~~~~G~~ly~~G~-~eeAl~~~e~Ai~l~~~~ 707 (754)
.||+.+.|..++...++- ... .+.|+|-+|..+.++|. +.||.+..+||-.-.-++
T Consensus 461 ~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 461 NLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 999999999999998832 222 36789999999999999 999998888887654433
No 361
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=78.68 E-value=1.4 Score=48.01 Aligned_cols=50 Identities=10% Similarity=-0.094 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS 547 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~ 547 (754)
..|+..-.-+++.++..+.||+.||..++.+.++++|+.++..+...+|+
T Consensus 292 ~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~ 341 (372)
T KOG0546|consen 292 GGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN 341 (372)
T ss_pred CcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence 45555556666677777777777777777777777777777777777775
No 362
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=77.86 E-value=1.9e+02 Score=35.85 Aligned_cols=221 Identities=17% Similarity=0.024 Sum_probs=139.1
Q ss_pred cchhhHHHHHHHhhh-ch-----hhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcch-------hhhhhHHHHHH
Q 004426 396 RVSNTTVMLLERLGE-CS-----TERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI-------YSLAGLARAKY 462 (754)
Q Consensus 396 ~r~~~~v~LLer~vr-~~-----~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~-------~a~~~larv~~ 462 (754)
.|...+..++.++-+ .+ .+....+...-..+.+...+++.++|++.-+.++..-+. .+....+.+..
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~ 508 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH 508 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH
Confidence 445555555555322 11 223233444566788999999999999999998887221 23445677888
Q ss_pred HhCCHHHHHHHHHHHHHccCC------CHHHHHHhhhc--CCh----hhHHHHHH----HHHhhCCCChHHHHHHHHHHH
Q 004426 463 KVGQQYSAYKLINSIISEHKP------TGWMYQERSLY--NLG----REKIVDLN----YASELDPTLSFPYKYRAVAKM 526 (754)
Q Consensus 463 ~~G~~~~A~~~~~~aI~~~~~------~g~ay~~r~~y--~~g----~eAl~dl~----kAi~LdP~~~~ay~~rg~~l~ 526 (754)
-+|++.+|......+-..... ..|+...++.. ..| .+....|+ +-+.-.|...++..-|+.++.
T Consensus 509 ~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~ 588 (894)
T COG2909 509 IRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLR 588 (894)
T ss_pred HhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHH
Confidence 999999998877766554221 12333322211 111 22223333 344557777888889999999
Q ss_pred HcCCHHHHHHHHHHHHHcC----CCH--HHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-cccccchhhhHHHHHH
Q 004426 527 EEGQIRAAISEIDRIIVFK----LSV--DCL--ELRAWLFIAADDYESALRDTLALLALESNY-MMFHGRVSGDHLVKLL 597 (754)
Q Consensus 527 ~lg~~~eAl~~~~rAl~l~----p~~--~~~--~~ra~~~~~lgd~~~Al~d~~~al~l~P~~-~~~~~~~~~~~~~~~l 597 (754)
.--++++|.....+.+++- |++ .++ +..+.+....||+++|.+-.+....+--+. ...+...++..-.-.+
T Consensus 589 ~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~l 668 (894)
T COG2909 589 AWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLIL 668 (894)
T ss_pred HHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHH
Confidence 9888999999999999883 222 222 367788999999999999999887754322 3344444454444445
Q ss_pred hhhhccccchhhhhhhhhc
Q 004426 598 NHHVRSWSPADCWIKLYDR 616 (754)
Q Consensus 598 ~~~~~~~~~A~~~~~l~~~ 616 (754)
-....+.++|.+|..-...
T Consensus 669 wl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 669 WLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred hcccCCHHHHHHHHHhccC
Confidence 5556666666655544333
No 363
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.82 E-value=11 Score=33.18 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=38.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC----H------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 525 KMEEGQIRAAISEIDRIIVFKLS----V------DCLELRAWLFIAADDYESALRDTLALLALESN 580 (754)
Q Consensus 525 l~~lg~~~eAl~~~~rAl~l~p~----~------~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~ 580 (754)
-.+.|+|.+|++.+.+....... . .++.+.+.++...|++++|+..++.|+++.-.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 45667888888877777766331 1 22344667788888888888888888887654
No 364
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.13 E-value=38 Score=38.03 Aligned_cols=101 Identities=16% Similarity=0.054 Sum_probs=60.5
Q ss_pred HHHhhhhhhHhhccchHHHHHHHHHHhhh----cc-hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc
Q 004426 420 LALHQLGCVMFEREEYKDACYYFEAAADA----GH-IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY 494 (754)
Q Consensus 420 ~Al~~LG~v~~~~g~~~eA~~~f~~AL~~----~~-~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y 494 (754)
.++..+|.-|..+|+++.|+++|.++-.- +| ...+.++-+|-.-.|++..-....++|.+-- .+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~--~~--------- 219 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTP--DA--------- 219 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc--hh---------
Confidence 47788999999999999999999984433 22 1344455556666666644443333333221 00
Q ss_pred CChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 495 NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRII 542 (754)
Q Consensus 495 ~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl 542 (754)
...+..--|. ..+-.-|.+...+++|..|...|-.+.
T Consensus 220 ---------~~~~~q~v~~--kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 220 ---------NENLAQEVPA--KLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred ---------hhhHHHhcCc--chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0111111121 245556777777889999998876654
No 365
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=76.93 E-value=72 Score=35.63 Aligned_cols=165 Identities=12% Similarity=0.004 Sum_probs=99.7
Q ss_pred HHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCccc-----cccchhhhHHHHHHhhhhccccchhhh
Q 004426 542 IVFKL-SVDCLELRAWLFIAADDYESALRDTLALLA-----LESNYMM-----FHGRVSGDHLVKLLNHHVRSWSPADCW 610 (754)
Q Consensus 542 l~l~p-~~~~~~~ra~~~~~lgd~~~Al~d~~~al~-----l~P~~~~-----~~~~~~~~~~~~~l~~~~~~~~~A~~~ 610 (754)
|+-+| +.+.+...+.++..+||.+.|-..+++||= +.|.+.. ..|+.. ..-+..+--..|
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~r---------L~~~~~eNR~ff 103 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCR---------LDYRRPENRQFF 103 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccc---------cCCccccchHHH
Confidence 45578 578888888999999999999999999974 3344411 111111 111122222222
Q ss_pred hhhhhccccc---cccc-hHHHHHHHHHcCCC-ChhH-HHhHHHHHHHcCCHHHHHHHHHHHHhcCC-C----chhHHHH
Q 004426 611 IKLYDRWSSV---DDIG-SLAVINQMLINDPG-KSFL-RFRQSLLLLRLNCQKAAMRCLRLARNHSS-S----EHERLVY 679 (754)
Q Consensus 611 ~~l~~~~~~~---~d~~-al~~~~~aL~l~P~-~~~~-~~~~g~~L~~lg~~eeAl~~~~~Al~l~P-~----~~ea~~~ 679 (754)
..++-..... +-.+ |++...=.+.+||. ++.. .+..-..-++-+.++-=++.++....... + -+.--+.
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S 183 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFS 183 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHH
Confidence 2222222222 3333 67777778888888 5543 33333344455555544444444333111 1 2245578
Q ss_pred HHHHHHHcCCH---------------HHHHHHHHHHHhcCCChHHHHHHHH
Q 004426 680 EGWILYDTGHR---------------EEALSRAEKSISIERTFEAFFLKAY 715 (754)
Q Consensus 680 ~G~~ly~~G~~---------------eeAl~~~e~Ai~l~~~~~a~~~~~~ 715 (754)
.+++++.+++- ++|-....+||..-|.+..-.++..
T Consensus 184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~~l 234 (360)
T PF04910_consen 184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLDKL 234 (360)
T ss_pred HHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 88889999888 8999999999999999886666665
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.74 E-value=14 Score=31.82 Aligned_cols=59 Identities=8% Similarity=0.053 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHH---HHHHHcCCHHHHHHHHHH
Q 004426 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRA---WLFIAADDYESALRDTLA 573 (754)
Q Consensus 515 ~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra---~~~~~lgd~~~Al~d~~~ 573 (754)
+...+-.|.=+...++.++|+..+++|++-.++ ++.+...| .+|...|+|.++++.--+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888888999999999999999998886 56565555 479999999998875433
No 367
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=76.66 E-value=49 Score=32.94 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=67.8
Q ss_pred HHHhhhhhhHhhccchHHHHHHHHHHhhhc----c-hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCH-HHHHHhhh
Q 004426 420 LALHQLGCVMFEREEYKDACYYFEAAADAG----H-IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTG-WMYQERSL 493 (754)
Q Consensus 420 ~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~----~-~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g-~ay~~r~~ 493 (754)
.++..+|.-+...|++++|.++|.++.+.. + .+.+..+-++.+..|++......++++-..-...| |...++
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr-- 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR-- 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH--
Confidence 578889999999999999999999977761 2 24566677888888888777666666543332111 222111
Q ss_pred cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004426 494 YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV 543 (754)
Q Consensus 494 y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~ 543 (754)
.-.+-|..++..++|.+|...|-.++.
T Consensus 115 -----------------------lk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 115 -----------------------LKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred -----------------------HHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 223456777778888888888876653
No 368
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=76.17 E-value=6.8 Score=28.47 Aligned_cols=31 Identities=26% Similarity=0.226 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHhcCCC
Q 004426 550 CLELRAWLFIAADDYESALRD--TLALLALESN 580 (754)
Q Consensus 550 ~~~~ra~~~~~lgd~~~Al~d--~~~al~l~P~ 580 (754)
.++..|..+..+|++++|+.. |+-+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 344555556666666666666 3355555554
No 369
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=75.87 E-value=9.4 Score=40.12 Aligned_cols=61 Identities=21% Similarity=0.028 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH
Q 004426 500 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF-KLSVDCLELRAWLFIA 560 (754)
Q Consensus 500 Al~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l-~p~~~~~~~ra~~~~~ 560 (754)
|...|.+|+.+.|++..+|+.+|.+....|+.=+|+=.|-|++.. .|.+.+..+...++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999966 3445555666665555
No 370
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=75.37 E-value=4.1 Score=43.41 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=58.2
Q ss_pred EEEEECCeEEehhhHHHhhcCH-HHHHhhcCCCC---CCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhHHHHHH
Q 004426 220 VTFCVRDKEISFVRNKIASLSS-PFKAMLYGGFV---ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELL 295 (754)
Q Consensus 220 V~f~V~g~~f~aHR~iLaa~S~-yF~aMf~~~~~---Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~vlelL 295 (754)
|+..|++..|-..+.+|-+.-. -.-.||.+++. ....++.++. .||+..+|++||+|--||.+...+.-.|-||-
T Consensus 98 ~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVA-dGi~s~vFRAILdYYksG~iRCP~~vSvpELr 176 (438)
T KOG3840|consen 98 VCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVA-DGMTSSCFRAILDYYQSGTMRCPSSVSVSELR 176 (438)
T ss_pred eEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehh-cchhHHHHHHHHHHHhcCceeCCCCCchHHHH
Confidence 8888999999988888854321 23467776542 2233466664 59999999999999999998754444566666
Q ss_pred HHhchhCh
Q 004426 296 SFANRFCC 303 (754)
Q Consensus 296 ~aA~~f~l 303 (754)
.+.|++++
T Consensus 177 EACDYLli 184 (438)
T KOG3840|consen 177 EACDYLLV 184 (438)
T ss_pred hhcceEEe
Confidence 66666554
No 371
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.80 E-value=32 Score=42.69 Aligned_cols=153 Identities=17% Similarity=0.059 Sum_probs=92.4
Q ss_pred HHhhhhhhHhhccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHH----------------------
Q 004426 421 ALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSII---------------------- 478 (754)
Q Consensus 421 Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI---------------------- 478 (754)
.|-+++.+.++.+...+|++.|-+| +.+..+...-.+..+.|.+++-+..+.-+-
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRL 1182 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchH
Confidence 5778899999999999999988653 223333333444445555554433332111
Q ss_pred -Hc-----cCCCHHHHHHhh-hcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----
Q 004426 479 -SE-----HKPTGWMYQERS-LYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL----- 546 (754)
Q Consensus 479 -~~-----~~~~g~ay~~r~-~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p----- 546 (754)
++ .|+.+..-+-.. .| +++. | .|-++--++..-|..+|..+..+|.|+.|+..-+||=..+-
T Consensus 1183 ~elE~fi~gpN~A~i~~vGdrcf---~~~~--y-~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1183 TELEEFIAGPNVANIQQVGDRCF---EEKM--Y-EAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVC 1256 (1666)
T ss_pred HHHHHHhcCCCchhHHHHhHHHh---hhhh--h-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 11 122222211110 01 1111 1 23333344566788999999999999999999998865442
Q ss_pred ---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 004426 547 ---------------------SVDCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (754)
Q Consensus 547 ---------------------~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~ 582 (754)
+.+.+...-..|...|=+++-+..++.++-|+--++
T Consensus 1257 faCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM 1313 (1666)
T KOG0985|consen 1257 FACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM 1313 (1666)
T ss_pred HHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH
Confidence 112222233458889999999999999998887654
No 372
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=74.78 E-value=3.4e+02 Score=37.34 Aligned_cols=313 Identities=12% Similarity=0.015 Sum_probs=172.0
Q ss_pred hhhhhHhhccchHHHHHHHHHH----hhhcch-hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChh
Q 004426 424 QLGCVMFEREEYKDACYYFEAA----ADAGHI-YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR 498 (754)
Q Consensus 424 ~LG~v~~~~g~~~eA~~~f~~A----L~~~~~-~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~ 498 (754)
.++.+-+.||.|..|.-++++= .+.+.. ..+..+-.+|...+++++-..-... ....|++-.-.......+..+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~sl~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPSLYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCccHHHHHHHHHhhccHH
Confidence 5777888999999999888862 111111 1223334467777777653222221 111222211111112223338
Q ss_pred hHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHH-HHHHcCCHHHHHHH------
Q 004426 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAW-LFIAADDYESALRD------ 570 (754)
Q Consensus 499 eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~-~~~~lgd~~~Al~d------ 570 (754)
+|.++|++++..+|+....|...-......|.++..+...+-.+.=.++ .+.++..+. +--.+++|+.-...
T Consensus 1467 da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~ 1546 (2382)
T KOG0890|consen 1467 DAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLSDRNI 1546 (2382)
T ss_pred HHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhhcccc
Confidence 9999999999999999988888888888888898888877666544433 344433221 11222222221111
Q ss_pred ----------------------------HHHHHhcCCCcccccc-----------chhhhHHHHHHhhhhcc-------c
Q 004426 571 ----------------------------TLALLALESNYMMFHG-----------RVSGDHLVKLLNHHVRS-------W 604 (754)
Q Consensus 571 ----------------------------~~~al~l~P~~~~~~~-----------~~~~~~~~~~l~~~~~~-------~ 604 (754)
-.+.+-++|-..-..+ +......+......+.. .
T Consensus 1547 e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~ 1626 (2382)
T KOG0890|consen 1547 EYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSA 1626 (2382)
T ss_pred cchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc
Confidence 0111112221111111 01111111111111111 1
Q ss_pred cchhhhhhhhhccccccccc-hHHHHHHHH-Hc------CCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 004426 605 SPADCWIKLYDRWSSVDDIG-SLAVINQML-IN------DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER 676 (754)
Q Consensus 605 ~~A~~~~~l~~~~~~~~d~~-al~~~~~aL-~l------~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 676 (754)
...|.|....+.-....++. .+-.++|++ +. +-.-++.|...|.+=-+.|+++-|....=.|.+.. -+++
T Consensus 1627 ~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i 1704 (2382)
T KOG0890|consen 1627 NNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEI 1704 (2382)
T ss_pred ccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchH
Confidence 12244555555444443332 222333332 22 33445667666666666999999999999999888 6788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-CCC------------hHHHHHHHHHhh----ccCCCCCchhHHHHHHHHHhc
Q 004426 677 LVYEGWILYDTGHREEALSRAEKSISI-ERT------------FEAFFLKAYILA----DTNLDPESSTYVIQLLEEALR 739 (754)
Q Consensus 677 ~~~~G~~ly~~G~~eeAl~~~e~Ai~l-~~~------------~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 739 (754)
+.-++-.+..+|+-..|+...++.+++ .|+ ..-+|.||.-+- +-+-. .+|.-|+..-.+|.-
T Consensus 1705 ~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n-~~s~~ilk~Y~~~~a 1783 (2382)
T KOG0890|consen 1705 VLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGN-FESKDILKYYHDAKA 1783 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHHH
Confidence 999999999999999999999999976 454 124444444332 33333 556666655555555
Q ss_pred C
Q 004426 740 C 740 (754)
Q Consensus 740 ~ 740 (754)
|
T Consensus 1784 i 1784 (2382)
T KOG0890|consen 1784 I 1784 (2382)
T ss_pred H
Confidence 4
No 373
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=73.77 E-value=28 Score=35.82 Aligned_cols=76 Identities=18% Similarity=0.091 Sum_probs=54.6
Q ss_pred hhHHHhHHHHHHHcCCHHH-------HHHHHHHHHhcCCC------chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 640 SFLRFRQSLLLLRLNCQKA-------AMRCLRLARNHSSS------EHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (754)
Q Consensus 640 ~~~~~~~g~~L~~lg~~ee-------Al~~~~~Al~l~P~------~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~ 706 (754)
+.++.+.|.++-.+|+.+. |+..|.+|++.... ..-.++-.|.+.+.+|+++||...|.+.|.....
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 5667788888888888654 55555555544432 2456777999999999999999999999997554
Q ss_pred hH--HHHHHHH
Q 004426 707 FE--AFFLKAY 715 (754)
Q Consensus 707 ~~--a~~~~~~ 715 (754)
.. ..-.+|-
T Consensus 198 s~~~~l~~~AR 208 (214)
T PF09986_consen 198 SKEPKLKDMAR 208 (214)
T ss_pred CCcHHHHHHHH
Confidence 44 4444443
No 374
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.46 E-value=1.1e+02 Score=31.30 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=58.1
Q ss_pred HHccCCCHHHHHHhhhcCChhhHHHHHHHHHhhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCHHH
Q 004426 478 ISEHKPTGWMYQERSLYNLGREKIVDLNYASELDP--TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK-----LSVDC 550 (754)
Q Consensus 478 I~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~LdP--~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~-----p~~~~ 550 (754)
.....+-...|+..+..+. .+|...|-++.. .| +.++-.+.+|..|. ..+.+.|+.-+.++|++. ++++.
T Consensus 104 tk~S~dP~llYy~Wsr~~d-~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~ei 180 (203)
T PF11207_consen 104 TKNSQDPYLLYYHWSRFGD-QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEI 180 (203)
T ss_pred HccCCCccHHHHHhhccCc-HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 3333444555665544321 456655544432 23 34566666776666 677899999999999993 34777
Q ss_pred HHHHHHHHHHcCCHHHH
Q 004426 551 LELRAWLFIAADDYESA 567 (754)
Q Consensus 551 ~~~ra~~~~~lgd~~~A 567 (754)
+...+-++..+|+++.|
T Consensus 181 l~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 181 LKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHhcchhhh
Confidence 88899999999999987
No 375
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.18 E-value=32 Score=35.66 Aligned_cols=96 Identities=20% Similarity=0.156 Sum_probs=66.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH--H--HH--HHHHHhhccCC
Q 004426 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE--A--FF--LKAYILADTNL 722 (754)
Q Consensus 649 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~--a--~~--~~~~~~~~~~~ 722 (754)
.|++-|...+|+...+.-++-+|.++.-...+=.+|.-.|++++|+...+-+-.+.|++- + |. .+..++-+.-+
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~evf 89 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNEVF 89 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHh
Confidence 567778888888888888888888888777777778888888888888888888888764 1 11 12222222111
Q ss_pred ----CC---C-chhHHHHHHHHHhcCCCCC
Q 004426 723 ----DP---E-SSTYVIQLLEEALRCPSDG 744 (754)
Q Consensus 723 ----~~---~-~~~~~~~~~~~~~~~~~~~ 744 (754)
-| - -|.--|..|-.||.|-|||
T Consensus 90 ag~~~Pgflg~p~p~wva~L~aala~h~dg 119 (273)
T COG4455 90 AGGAVPGFLGGPSPEWVAALLAALALHSDG 119 (273)
T ss_pred ccCCCCCCcCCCCHHHHHHHHHHHhcccCC
Confidence 11 1 3445567777899999886
No 376
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=72.72 E-value=22 Score=38.24 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLAL 577 (754)
Q Consensus 514 ~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l 577 (754)
+..++..++..+...|+++.+++.+++.+..+|- -..|...-.+|...|+...|++.|++.-++
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3456677888999999999999999999999994 555555556899999999999999998885
No 377
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=72.12 E-value=5.1 Score=45.16 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=66.6
Q ss_pred hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 004426 452 YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQI 531 (754)
Q Consensus 452 ~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~ 531 (754)
++..|+.|++..+|++..|++.++.. ..+.. +. |.++ -+-+...|++.|-+|++++||
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~i-dl~~~--------~l----------~~~V---~~~~is~~YyvGFaylMlrRY 180 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENI-DLNKK--------GL----------YTKV---PACHISTYYYVGFAYLMLRRY 180 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhcc-Ccccc--------hh----------hccC---cchheehHHHHHHHHHHHHHH
Confidence 36788999999999999988765532 11211 11 1212 234567789999999999999
Q ss_pred HHHHHHHHHHHHcCCCHH-HHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCC
Q 004426 532 RAAISEIDRIIVFKLSVD-CLELRAWLFI-AADDYESALRDTLALLALESN 580 (754)
Q Consensus 532 ~eAl~~~~rAl~l~p~~~-~~~~ra~~~~-~lgd~~~Al~d~~~al~l~P~ 580 (754)
.+|+..|+.++-.--... .+..+..-+. -.+..|...+.+--++.+.|.
T Consensus 181 ~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 181 ADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 999999999985422111 1111111111 124456666666667777775
No 378
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=72.08 E-value=8.5 Score=44.01 Aligned_cols=51 Identities=12% Similarity=0.093 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCCChhHHHhHHHHHHHcCC-HHHHHHHHHHHHhcCCCchhH
Q 004426 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNC-QKAAMRCLRLARNHSSSEHER 676 (754)
Q Consensus 626 l~~~~~aL~l~P~~~~~~~~~g~~L~~lg~-~eeAl~~~~~Al~l~P~~~ea 676 (754)
-.+|.+||...|+++++|..-|.=+..-|. .+.|...+.++|+.+|+++..
T Consensus 125 ~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~L 176 (568)
T KOG2396|consen 125 KKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKL 176 (568)
T ss_pred HHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHH
Confidence 348999999999999999999988888777 999999999999999998754
No 379
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=71.58 E-value=1.2e+02 Score=33.42 Aligned_cols=106 Identities=16% Similarity=0.075 Sum_probs=52.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc----hHHHHH
Q 004426 555 AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG----SLAVIN 630 (754)
Q Consensus 555 a~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~----al~~~~ 630 (754)
+++-.++|+..+|++-++...+--|-..++ ...-.+++..++-..-||+.. .+.++||+. |..+|.
T Consensus 282 AMCARklGrlrEA~K~~RDL~ke~pl~t~l------niheNLiEalLE~QAYADvqa----vLakYDdislPkSA~icYT 351 (556)
T KOG3807|consen 282 AMCARKLGRLREAVKIMRDLMKEFPLLTML------NIHENLLEALLELQAYADVQA----VLAKYDDISLPKSAAICYT 351 (556)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhccHHHHH------HHHHHHHHHHHHHHHHHHHHH----HHHhhccccCcchHHHHHH
Confidence 356667777777777777766666632111 111112222222222233222 222334443 333555
Q ss_pred HHHHc-----CCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 004426 631 QMLIN-----DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 674 (754)
Q Consensus 631 ~aL~l-----~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 674 (754)
.||-. +-=.++.-.++|+.-..++ |++.+.+|.+.||.-+
T Consensus 352 aALLK~RAVa~kFspd~asrRGLS~AE~~----AvEAihRAvEFNPHVP 396 (556)
T KOG3807|consen 352 AALLKTRAVSEKFSPETASRRGLSTAEIN----AVEAIHRAVEFNPHVP 396 (556)
T ss_pred HHHHHHHHHHhhcCchhhhhccccHHHHH----HHHHHHHHhhcCCCCc
Confidence 44421 1224455556665555443 6667788888888765
No 380
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=69.66 E-value=1.5e+02 Score=31.19 Aligned_cols=189 Identities=17% Similarity=0.184 Sum_probs=98.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CC---CHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCccccccch----
Q 004426 518 YKYRAVAKMEEGQIRAAISEIDRIIVF-KL---SVDCLELRAW-LFIAADDYESALRDTLALLALESNYMMFHGRV---- 588 (754)
Q Consensus 518 y~~rg~~l~~lg~~~eAl~~~~rAl~l-~p---~~~~~~~ra~-~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~---- 588 (754)
..++|.+.-+.+||++.+....++++. +| +.+--+.... .....|..-.+.+-+..+-.-.-.. |+.
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~----~~~~~~~ 79 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESR----GNEDHVA 79 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhcc----CchHHHH
Confidence 356778888889999999999999987 54 2333333333 3455666667776666522211100 111
Q ss_pred hhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCC-----------hhHHHhHHHHHH---HcC
Q 004426 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK-----------SFLRFRQSLLLL---RLN 654 (754)
Q Consensus 589 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~-----------~~~~~~~g~~L~---~lg 654 (754)
.+...+..+...+... | +++ +..++.-|--...+ +++|-.++.+.. +..
T Consensus 80 ~~~~yr~kie~EL~~i----C-----------~ei--l~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~ 142 (244)
T smart00101 80 SIKEYRGKIETELSKI----C-----------DGI--LKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKE 142 (244)
T ss_pred HHHHHHHHHHHHHHHH----H-----------HHH--HHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 0111111111111110 0 000 22232222222211 233333333321 112
Q ss_pred CHHHHHHHHHHHHh-----cCCCchhHH---HHHHHHHHH-cCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhccCCCCC
Q 004426 655 CQKAAMRCLRLARN-----HSSSEHERL---VYEGWILYD-TGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPE 725 (754)
Q Consensus 655 ~~eeAl~~~~~Al~-----l~P~~~ea~---~~~G~~ly~-~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~~~~~~~ 725 (754)
-.+.|...|+.|++ +.|.++-.+ .|.+.-+|. +++.++|.....+|+. .|.+--|+ |+.+
T Consensus 143 ~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd----------~Ai~~ld~-l~ee 211 (244)
T smart00101 143 AAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD----------EAIAELDT-LGEE 211 (244)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------HHHHHhhc-cChh
Confidence 25578899998886 557777443 222333333 5999999988888743 44444442 3333
Q ss_pred c---hhHHHHHHHHHh
Q 004426 726 S---STYVIQLLEEAL 738 (754)
Q Consensus 726 ~---~~~~~~~~~~~~ 738 (754)
+ |..++|||-|=|
T Consensus 212 ~y~dstlImqLLrDNL 227 (244)
T smart00101 212 SYKDSTLIMQLLRDNL 227 (244)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3 788999998755
No 381
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.03 E-value=12 Score=38.56 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=52.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 004426 523 VAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (754)
Q Consensus 523 ~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~ 582 (754)
.-+.+.++.++||...+.-++-+|. ..+-+....++.-.|+|+.|+.-++-+-+++|++-
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3577889999999999999999994 66666677889999999999999999999999983
No 382
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.86 E-value=81 Score=31.65 Aligned_cols=126 Identities=15% Similarity=0.159 Sum_probs=61.5
Q ss_pred HhhccchHHHHHHHHHHhhhcc----hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccC--CCH---------HHHHHhhh
Q 004426 429 MFEREEYKDACYYFEAAADAGH----IYSLAGLARAKYKVGQQYSAYKLINSIISEHK--PTG---------WMYQERSL 493 (754)
Q Consensus 429 ~~~~g~~~eA~~~f~~AL~~~~----~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~--~~g---------~ay~~r~~ 493 (754)
..+.++-++|...|...-+-++ .-+....+.+....|+...|+..|+.+-...+ ..+ +.+...+-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 3445667777777764333232 22333455677788888888888877654432 111 11111111
Q ss_pred cCChhhHHHHHH-HHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004426 494 YNLGREKIVDLN-YASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWL 557 (754)
Q Consensus 494 y~~g~eAl~dl~-kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~ 557 (754)
| ++-....+ -+..-+|--..+--.+|.+-.+.|++..|...|..+..-.-.|....+|+.+
T Consensus 148 y---~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~ 209 (221)
T COG4649 148 Y---DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQI 209 (221)
T ss_pred H---HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHH
Confidence 1 11100000 0222334444445556666666666666666666655422224545555544
No 383
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=68.38 E-value=14 Score=44.29 Aligned_cols=80 Identities=20% Similarity=0.193 Sum_probs=54.7
Q ss_pred HHHHHHHhhCC----CChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 502 VDLNYASELDP----TLSFPYKYRAVAKME--EGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLAL 574 (754)
Q Consensus 502 ~dl~kAi~LdP----~~~~ay~~rg~~l~~--lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~a 574 (754)
-.|..++.+-| ..+.-..+.+.+++. +|++..++.+.+-|+...|. ..++.-|+..|..+++++-|++|.+-.
T Consensus 74 ~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~ 153 (748)
T KOG4151|consen 74 FRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIV 153 (748)
T ss_pred hhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33444454444 223344445554444 57888888888888888886 455666788888888888888888888
Q ss_pred HhcCCCc
Q 004426 575 LALESNY 581 (754)
Q Consensus 575 l~l~P~~ 581 (754)
...+|++
T Consensus 154 ~~~~p~~ 160 (748)
T KOG4151|consen 154 EKMDPSN 160 (748)
T ss_pred hcCCCCc
Confidence 8888876
No 384
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.09 E-value=74 Score=37.54 Aligned_cols=174 Identities=18% Similarity=0.192 Sum_probs=88.7
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 503 DLNYASELDPTLSFPYKYRAVAKME-EGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 503 dl~kAi~LdP~~~~ay~~rg~~l~~-lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
||+.|.+.=|+-+.....+..-+.+ +|-.+ +||++.++++ .|.-+..++|+++.|... |.+.+..-
T Consensus 601 d~~~a~~vLp~I~k~~rt~va~Fle~~g~~e-------~AL~~s~D~d---~rFelal~lgrl~iA~~l---a~e~~s~~ 667 (794)
T KOG0276|consen 601 DLEVADGVLPTIPKEIRTKVAHFLESQGMKE-------QALELSTDPD---QRFELALKLGRLDIAFDL---AVEANSEV 667 (794)
T ss_pred cccccccccccCchhhhhhHHhHhhhccchH-------hhhhcCCChh---hhhhhhhhcCcHHHHHHH---HHhhcchH
Confidence 4566667667777666666555544 44443 3455556553 344566778888877552 22222210
Q ss_pred cccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHH
Q 004426 582 MMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAM 660 (754)
Q Consensus 582 ~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl 660 (754)
=|-+|++.-.+..+.. |-.|+.+|-.+ -.+=++....|+.+.-.
T Consensus 668 ---------------------------Kw~~Lg~~al~~~~l~lA~EC~~~a~d~--------~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 668 ---------------------------KWRQLGDAALSAGELPLASECFLRARDL--------GSLLLLYTSSGNAEGLA 712 (794)
T ss_pred ---------------------------HHHHHHHHHhhcccchhHHHHHHhhcch--------hhhhhhhhhcCChhHHH
Confidence 1223333322223332 34455554332 11111222345554322
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhccCCCCCchhHHHHHHHHHhc
Q 004426 661 RCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILADTNLDPESSTYVIQLLEEALR 739 (754)
Q Consensus 661 ~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (754)
.....+-+--.+|. |. .+++.+|++++++....+ -+|=.| |||.|-|.. +.-+.|+.|-.+-|.
T Consensus 713 ~la~~~~~~g~~N~-AF----~~~~l~g~~~~C~~lLi~---t~r~peAal~ArtYlp-------s~vs~iv~~wk~~l~ 777 (794)
T KOG0276|consen 713 VLASLAKKQGKNNL-AF----LAYFLSGDYEECLELLIS---TQRLPEAALFARTYLP-------SQVSRIVELWKEDLS 777 (794)
T ss_pred HHHHHHHhhcccch-HH----HHHHHcCCHHHHHHHHHh---cCcCcHHHHHHhhhCh-------HHHHHHHHHHHHHhh
Confidence 23233332222222 21 467888999999876654 455444 999887753 455666666655554
No 385
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=67.54 E-value=13 Score=27.02 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHhcCC
Q 004426 676 RLVYEGWILYDTGHREEALSR--AEKSISIER 705 (754)
Q Consensus 676 a~~~~G~~ly~~G~~eeAl~~--~e~Ai~l~~ 705 (754)
.++.+|-.+|.+|++++|+.. |+-+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 445556666666666666666 445555544
No 386
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=67.19 E-value=59 Score=41.49 Aligned_cols=161 Identities=15% Similarity=0.122 Sum_probs=103.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------C
Q 004426 518 YKYRAVAKMEEGQIRAAISEIDRIIVF--------KLS-VDCLELRAWLFIAADDYESALRDTLALLALES--------N 580 (754)
Q Consensus 518 y~~rg~~l~~lg~~~eAl~~~~rAl~l--------~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P--------~ 580 (754)
-.-.|..-+..|.+.+|.+ +.+++.+ .|+ ..++...+.++..+||+++|++.-++|.-+.- +
T Consensus 935 ~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 3446666777788888888 5555544 454 56778889999999999999999887766442 2
Q ss_pred ccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHc--------CCCChhHHHhHHHHHHH
Q 004426 581 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN--------DPGKSFLRFRQSLLLLR 652 (754)
Q Consensus 581 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l--------~P~~~~~~~~~g~~L~~ 652 (754)
.+..+++.+ ......++. .+|+..+.+++.+ .|.-+....+.+.++.-
T Consensus 1014 t~~~y~nla------l~~f~~~~~------------------~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~ 1069 (1236)
T KOG1839|consen 1014 TKLAYGNLA------LYEFAVKNL------------------SGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLG 1069 (1236)
T ss_pred HHHHhhHHH------HHHHhccCc------------------cchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhh
Confidence 222333333 222222222 2346677777654 67778888999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 653 LNCQKAAMRCLRLARNHSSSEHE-RLVYEGWILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 653 lg~~eeAl~~~~~Al~l~P~~~e-a~~~~G~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
++..+-|++..+.|+..+-.-.. -..--|.++-..++..++...++.|+..
T Consensus 1070 v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1070 VEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999986543221 1122233444445555555555555543
No 387
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=67.18 E-value=1.8e+02 Score=30.92 Aligned_cols=138 Identities=12% Similarity=-0.043 Sum_probs=77.2
Q ss_pred HHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH----------------HHHcCCC-HHHHHHHHH-HHHHcCCHHHH
Q 004426 506 YASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDR----------------IIVFKLS-VDCLELRAW-LFIAADDYESA 567 (754)
Q Consensus 506 kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~r----------------Al~l~p~-~~~~~~ra~-~~~~lgd~~~A 567 (754)
+.-...-.++.-|...|..+.+.|++.+|...|-. .-+-.|+ .+.+..|+. -|..+|+...|
T Consensus 81 ~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A 160 (260)
T PF04190_consen 81 KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDA 160 (260)
T ss_dssp HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHH
Confidence 33344446678888889999999998888765411 1122343 666777886 59999999999
Q ss_pred HHHHHHHHhc----CCCccc----cccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCC
Q 004426 568 LRDTLALLAL----ESNYMM----FHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK 639 (754)
Q Consensus 568 l~d~~~al~l----~P~~~~----~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~ 639 (754)
...++.-.+. +|+..- +.-.....+....+....+.- .++.+..|.++ |...|+.||..
T Consensus 161 ~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~-~~~~F~~L~~~------------Y~~~L~rd~~~ 227 (260)
T PF04190_consen 161 NELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERD-NLPLFKKLCEK------------YKPSLKRDPSF 227 (260)
T ss_dssp HHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT--HHHHHHHHHH------------THH---HHHHT
T ss_pred HHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcC-cHHHHHHHHHH------------hCccccccHHH
Confidence 9887776665 776432 122223444444444444443 34555566555 56667777777
Q ss_pred hhHHHhHHHHHHHcCCH
Q 004426 640 SFLRFRQSLLLLRLNCQ 656 (754)
Q Consensus 640 ~~~~~~~g~~L~~lg~~ 656 (754)
..+....|..+.....+
T Consensus 228 ~~~L~~IG~~yFgi~~~ 244 (260)
T PF04190_consen 228 KEYLDKIGQLYFGIQPP 244 (260)
T ss_dssp HHHHHHHHHHHH---S-
T ss_pred HHHHHHHHHHHCCCCCC
Confidence 77777777777765543
No 388
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=66.83 E-value=21 Score=44.72 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHc
Q 004426 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT 687 (754)
Q Consensus 626 l~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~ 687 (754)
|.-|++ |--.|+-|.=|..+|+++.++|.++|=+++|..|++.-|+.++.-.-+--+-|.+
T Consensus 539 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (932)
T PRK13184 539 LSEFSY-LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRL 599 (932)
T ss_pred HHHHHH-hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 444443 3346888999999999999999999999999999999999999888777777654
No 389
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.81 E-value=2e+02 Score=31.86 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=41.6
Q ss_pred HHhhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 507 ASELDPTLS---FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 507 Ai~LdP~~~---~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
..+++|... ....+.|.=|+++++++.|.-+|+||..-.-.+..+ .-+..+.|+++.+.+ ..+|++
T Consensus 114 i~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~--------~~~ei~ka~~e~ds~-k~~~N~ 182 (449)
T COG3014 114 VRAYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEF--------YYEEVQKAIKEIDSS-KHNINM 182 (449)
T ss_pred hhhcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhc-cCCCch
Confidence 344444443 457789999999999999999999999532212111 112245555655543 467776
No 390
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=65.87 E-value=14 Score=38.12 Aligned_cols=96 Identities=17% Similarity=-0.011 Sum_probs=62.7
Q ss_pred CCCc-EEEEECCeEEehhhHHH-hhcCHHHHHhhcCCCC--CCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCCh--h
Q 004426 216 EDDS-VTFCVRDKEISFVRNKI-ASLSSPFKAMLYGGFV--ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCP--G 289 (754)
Q Consensus 216 ~~~~-V~f~V~g~~f~aHR~iL-aa~S~yF~aMf~~~~~--Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~--~ 289 (754)
++.+ |.+-|||+-+..-..-| .-.-.....||++.+. -+......| |-+-..|+-||+|+-|..+. ++. .
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI---DRDG~lFRyvL~~LRt~~l~-lpe~f~ 81 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI---DRDGFLFRYVLDYLRTKALL-LPEDFA 81 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE---cCCcchHHHHHHHhcccccc-cchhhh
Confidence 3445 78888887655443322 2223344567765321 122335566 44568999999999996655 444 6
Q ss_pred HHHHHHHHhchhChhhHHHHHHHHHH
Q 004426 290 IVLELLSFANRFCCEEMKSACDAHLA 315 (754)
Q Consensus 290 ~vlelL~aA~~f~l~~Lk~~Ce~~L~ 315 (754)
++-.|..-|++|+++.+...+.+-..
T Consensus 82 e~~~L~rEA~f~~l~~~~~~l~~~~~ 107 (221)
T KOG2723|consen 82 EVERLVREAEFFQLEAPVTYLLNSGQ 107 (221)
T ss_pred hHHHHHHHHHHHccccHHHHHhcccc
Confidence 78999999999999988876655443
No 391
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=61.24 E-value=21 Score=30.52 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=32.7
Q ss_pred HHhHHHHHHHcCCHHHHHHHHH-------HHHhcCCCchhHHHHHHHHHHHcCCHH
Q 004426 643 RFRQSLLLLRLNCQKAAMRCLR-------LARNHSSSEHERLVYEGWILYDTGHRE 691 (754)
Q Consensus 643 ~~~~g~~L~~lg~~eeAl~~~~-------~Al~l~P~~~ea~~~~G~~ly~~G~~e 691 (754)
+..+|.-+.+.|++++|+..|+ +++...||++-...+++.+.-.+.|.+
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae 64 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIE 64 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 3344444555566665555555 455678999999999888887776554
No 392
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=60.87 E-value=25 Score=44.58 Aligned_cols=123 Identities=14% Similarity=0.175 Sum_probs=80.5
Q ss_pred HhhhhhhHhhccchHHHHHHHHHHhhh-------cch---hhhhhHHHHHHHhCCHHHHHHHHHHHHHcc--------CC
Q 004426 422 LHQLGCVMFEREEYKDACYYFEAAADA-------GHI---YSLAGLARAKYKVGQQYSAYKLINSIISEH--------KP 483 (754)
Q Consensus 422 l~~LG~v~~~~g~~~eA~~~f~~AL~~-------~~~---~a~~~larv~~~~G~~~~A~~~~~~aI~~~--------~~ 483 (754)
....|......+.+.+|.+ ..+++.. -|+ ..+..++++++..|++++|+..-.++.-.. ++
T Consensus 935 ~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 3455666666777777766 4444443 121 245678899999999999988877664322 23
Q ss_pred CHHHHHHhhhcCCh----hhHHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004426 484 TGWMYQERSLYNLG----REKIVDLNYASEL--------DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK 545 (754)
Q Consensus 484 ~g~ay~~r~~y~~g----~eAl~dl~kAi~L--------dP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~ 545 (754)
-...|.+...|.-+ ..|+..+.+|.++ -|.-+..-.+.+.++...++++-|+.....|++++
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444444443322 5566666666554 45556667788888888889999999888888764
No 393
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=60.62 E-value=30 Score=38.94 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=38.5
Q ss_pred hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 004426 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (754)
Q Consensus 625 al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 667 (754)
||...+|.|.++|....-|.++|.+.-+|.|+-||-+++--|.
T Consensus 247 ALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 247 ALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999998876553
No 394
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.47 E-value=95 Score=36.92 Aligned_cols=100 Identities=15% Similarity=0.006 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHH
Q 004426 552 ELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQ 631 (754)
Q Consensus 552 ~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~ 631 (754)
.+.|.-+++.++|..+++.|...+.--|.+.+ . +++
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~--------~----------------------------~~F-------- 393 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNY--------S----------------------------DRF-------- 393 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhh--------h----------------------------hHH--------
Confidence 34455689999999999999999998886521 0 001
Q ss_pred HHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 632 MLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 632 aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
+...-++..|++.+...+.|.+.++.|=+++|.++--..+.--+....|.-++|++..-...++
T Consensus 394 --------aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 394 --------AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred --------HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 2223345668888889999999999999999999988888888888999999999887766654
No 395
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=58.30 E-value=1.1e+02 Score=30.49 Aligned_cols=97 Identities=15% Similarity=0.011 Sum_probs=61.2
Q ss_pred hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 004426 452 YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQI 531 (754)
Q Consensus 452 ~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~ 531 (754)
.++..+|.-+...|+.+.|++.|.++.......+.. .+.+++.-.+-+..+++
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~---------------------------id~~l~~irv~i~~~d~ 89 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK---------------------------IDMCLNVIRVAIFFGDW 89 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH---------------------------HHHHHHHHHHHHHhCCH
Confidence 355567777888888888888877755443222111 12344555566677788
Q ss_pred HHHHHHHHHHHHcCCCHHHH-------HHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 532 RAAISEIDRIIVFKLSVDCL-------ELRAWLFIAADDYESALRDTLALL 575 (754)
Q Consensus 532 ~eAl~~~~rAl~l~p~~~~~-------~~ra~~~~~lgd~~~Al~d~~~al 575 (754)
......+++|-.+--....| ...|..++..++|.+|-..|-.++
T Consensus 90 ~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 90 SHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 88888878777663322112 234566788888888888776654
No 396
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=56.39 E-value=3.6 Score=44.53 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=38.6
Q ss_pred hcCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCchh
Q 004426 317 LVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPK 359 (754)
Q Consensus 317 ~i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~e~ 359 (754)
.++ ++||+.|+--+.......|.+.|++|+..|+.+|+.++-
T Consensus 71 ~l~-~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~ 112 (317)
T PF11822_consen 71 SLT-PSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPC 112 (317)
T ss_pred cCC-cCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCC
Confidence 466 899999999999999999999999999999999988664
No 397
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=55.72 E-value=50 Score=37.80 Aligned_cols=135 Identities=12% Similarity=0.070 Sum_probs=93.2
Q ss_pred HcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCC
Q 004426 560 AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK 639 (754)
Q Consensus 560 ~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~ 639 (754)
.-||.-.|-+-...+++-.|.. .-..++...+..++.+++.+-+ - ++..+.+|.....
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~------p~~i~l~~~i~~~lg~ye~~~~------~---------~s~~~~~~~s~~~- 358 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQD------PVLIQLRSVIFSHLGYYEQAYQ------D---------ISDVEKIIGTTDS- 358 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCC------chhhHHHHHHHHHhhhHHHHHH------H---------hhchhhhhcCCch-
Confidence 4578888888888899888876 3355677777778888877732 1 2233444433211
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----------HH
Q 004426 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF----------EA 709 (754)
Q Consensus 640 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~----------~a 709 (754)
-.. -+=.-+.++||+.+|.....-.+.-.-.++|....-+-.--.+|-+|||+-.+.|.+.|+|.- ..
T Consensus 359 -~~~-~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~ 436 (831)
T PRK15180 359 -TLR-CRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQ 436 (831)
T ss_pred -HHH-HHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccce
Confidence 111 122346789999999999888887777777777666666667889999999999999998843 35
Q ss_pred HHHHHHHhh
Q 004426 710 FFLKAYILA 718 (754)
Q Consensus 710 ~~~~~~~~~ 718 (754)
||+.|-|+.
T Consensus 437 ~~~~~~~~~ 445 (831)
T PRK15180 437 YFNDGNAFS 445 (831)
T ss_pred eccCcchHH
Confidence 777666553
No 398
>PRK11619 lytic murein transglycosylase; Provisional
Probab=53.91 E-value=4.8e+02 Score=31.62 Aligned_cols=238 Identities=14% Similarity=0.015 Sum_probs=121.2
Q ss_pred HHHHHHHHHccCCCHHHHHHhhhcCC---hhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Q 004426 471 YKLINSIISEHKPTGWMYQERSLYNL---GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK-- 545 (754)
Q Consensus 471 ~~~~~~aI~~~~~~g~ay~~r~~y~~---g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~-- 545 (754)
...+..-+..+|+.+..-.-|..+.. ....+.+|.+.-.-.|.+.......+.++...|+-++|.+...++.--.
T Consensus 82 ~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~ 161 (644)
T PRK11619 82 AVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS 161 (644)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Confidence 44666677777766555554433211 1233444444232347888888888888999999888888887776443
Q ss_pred -CC----------------HHHHHHHHHHHHHcCCHHHHHHH-------------HHHHHhcCCCcccc-ccch--h---
Q 004426 546 -LS----------------VDCLELRAWLFIAADDYESALRD-------------TLALLALESNYMMF-HGRV--S--- 589 (754)
Q Consensus 546 -p~----------------~~~~~~ra~~~~~lgd~~~Al~d-------------~~~al~l~P~~~~~-~~~~--~--- 589 (754)
|+ .+.+..|.......|+...|... -..++.-+|..... .... .
T Consensus 162 ~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~ 241 (644)
T PRK11619 162 LPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFARTTGPTDFT 241 (644)
T ss_pred CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhh
Confidence 21 11122233334444444444332 23334444443220 0000 0
Q ss_pred -hhHHHHHHhhhhccccchhhhhhhhhcccccc--------------------ccchHHHHHHHHHcCCCChhHHHhHHH
Q 004426 590 -GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVD--------------------DIGSLAVINQMLINDPGKSFLRFRQSL 648 (754)
Q Consensus 590 -~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~--------------------d~~al~~~~~aL~l~P~~~~~~~~~g~ 648 (754)
-....+..+...++.+.|..+..-........ +..+...++.+. ..+.+...+-.+-.
T Consensus 242 ~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~-~~~~~~~~~e~r~r 320 (644)
T PRK11619 242 RQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI-MRSQSTSLLERRVR 320 (644)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc-cccCCcHHHHHHHH
Confidence 00111111223333333322111110000000 111111122111 11122333333333
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 004426 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAF 710 (754)
Q Consensus 649 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~ 710 (754)
+-++.++.+.+...+...-.-..+....+|.+|-.+..+|+-++|-..|+++.. .++|=.|
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~-~~~fYG~ 381 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ-QRGFYPM 381 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc-CCCcHHH
Confidence 444788888877777775444445778999999999999999999999999844 6776544
No 399
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=52.70 E-value=1.2e+02 Score=34.20 Aligned_cols=182 Identities=12% Similarity=0.018 Sum_probs=98.2
Q ss_pred hHHHHHHHHH--HHHcCCHHHHHHHHHHHHHc----CC---C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCC
Q 004426 515 SFPYKYRAVA--KMEEGQIRAAISEIDRIIVF----KL---S---VDCLELRAWLFIAADDYESALRDTLALLA---LES 579 (754)
Q Consensus 515 ~~ay~~rg~~--l~~lg~~~eAl~~~~rAl~l----~p---~---~~~~~~ra~~~~~lgd~~~Al~d~~~al~---l~P 579 (754)
..+|..+-.+ +++++++.+|.+.-+..+.- |- + ...|+.....+...|+..+-..-+.+-++ |.-
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 4555554444 34468899998877766532 11 1 12344445567777876665555554444 332
Q ss_pred CccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHH
Q 004426 580 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 659 (754)
Q Consensus 580 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeA 659 (754)
+. .|+.-..+++-.-..+-..++.|+-++.-.. ..+.+- + -.-+.+.|.+|.+-.-++++..|
T Consensus 204 d~---e~qavLiN~LLr~yL~n~lydqa~~lvsK~~------------~pe~~s-n-ne~ARY~yY~GrIkaiqldYssA 266 (493)
T KOG2581|consen 204 DE---EGQAVLINLLLRNYLHNKLYDQADKLVSKSV------------YPEAAS-N-NEWARYLYYLGRIKAIQLDYSSA 266 (493)
T ss_pred cc---hhHHHHHHHHHHHHhhhHHHHHHHHHhhccc------------Cccccc-c-HHHHHHHHHHhhHHHhhcchhHH
Confidence 22 3444444433333333444555531111111 011111 1 13456788899999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHH-------HHHHHcCCHHHHHHHHHHHHhcCC----ChHHHHHHHHHhhcc
Q 004426 660 MRCLRLARNHSSSEHERLVYEG-------WILYDTGHREEALSRAEKSISIER----TFEAFFLKAYILADT 720 (754)
Q Consensus 660 l~~~~~Al~l~P~~~ea~~~~G-------~~ly~~G~~eeAl~~~e~Ai~l~~----~~~a~~~~~~~~~~~ 720 (754)
.+++-+|++..|+++ |+-.+- .+-..+|.+-| +++=-|| |...||...-|.-+.
T Consensus 267 ~~~~~qa~rkapq~~-alGf~q~v~k~~ivv~ll~geiPe------rs~F~Qp~~~ksL~~Yf~Lt~AVr~g 331 (493)
T KOG2581|consen 267 LEYFLQALRKAPQHA-ALGFRQQVNKLMIVVELLLGEIPE------RSVFRQPGMRKSLRPYFKLTQAVRLG 331 (493)
T ss_pred HHHHHHHHHhCcchh-hhhHHHHHHHHHHHHHHHcCCCcc------hhhhcCccHHHHHHHHHHHHHHHHHh
Confidence 999999999999833 332221 12334566553 3333344 555777665554443
No 400
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.59 E-value=70 Score=39.03 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=62.6
Q ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccc--cccc----hhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHH
Q 004426 557 LFIAADDYESALRDTLALLA-LESNYMM--FHGR----VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVI 629 (754)
Q Consensus 557 ~~~~lgd~~~Al~d~~~al~-l~P~~~~--~~~~----~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~ 629 (754)
-+...||+++|...|-+.+. ++|.+.. |.-. --+.++..+...-+.+-+.-..++..|-++..++..
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL------ 450 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKL------ 450 (933)
T ss_pred HHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHH------
Confidence 34455555555555544443 4444332 1111 113333334444444445555567777777666433
Q ss_pred HHHHHcCCCChhHHH--hHH-HHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHH
Q 004426 630 NQMLINDPGKSFLRF--RQS-LLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAE 698 (754)
Q Consensus 630 ~~aL~l~P~~~~~~~--~~g-~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e 698 (754)
+.-+...+ .++..| ..+ .++.+-|..++|+....+.-. --+++-.++-++|+|+||++..+
T Consensus 451 ~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-------he~vl~ille~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 451 TEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKK-------HEWVLDILLEDLHNYEEALRYIS 514 (933)
T ss_pred HHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-------CHHHHHHHHHHhcCHHHHHHHHh
Confidence 22222223 111111 111 124556777777665444322 23566677888899999986543
No 401
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=52.52 E-value=5.1e+02 Score=31.51 Aligned_cols=143 Identities=14% Similarity=0.112 Sum_probs=79.2
Q ss_pred hhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHc---cCCCHHHHH
Q 004426 413 TERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISE---HKPTGWMYQ 489 (754)
Q Consensus 413 ~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~---~~~~g~ay~ 489 (754)
.+.-++..|+.+.|..+.+..++++|.++|..--.. .+...+++....+++-.....+..+. -|..|.|+.
T Consensus 790 ~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 790 DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------ENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFT 863 (1189)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------HhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHH
Confidence 344456789999999999999999999999752221 23344556555554322222222222 234678888
Q ss_pred HhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHcCCHHHHH
Q 004426 490 ERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAADDYESAL 568 (754)
Q Consensus 490 ~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~-ra~~~~~lgd~~~Al 568 (754)
.+|.. ++|.+.|-+- -+|.-+ -.+-..++++.+|++-.++-- =|....+.. .+.-+++.++..+|+
T Consensus 864 svGMC---~qAV~a~Lr~--s~pkaA------v~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaI 930 (1189)
T KOG2041|consen 864 SVGMC---DQAVEAYLRR--SLPKAA------VHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAI 930 (1189)
T ss_pred hhchH---HHHHHHHHhc--cCcHHH------HHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHH
Confidence 88777 6666544221 112110 112234444555544333211 133333333 334577888888888
Q ss_pred HHHHHH
Q 004426 569 RDTLAL 574 (754)
Q Consensus 569 ~d~~~a 574 (754)
+-+++|
T Consensus 931 e~~Rka 936 (1189)
T KOG2041|consen 931 EKDRKA 936 (1189)
T ss_pred HHhhhc
Confidence 888877
No 402
>PF12854 PPR_1: PPR repeat
Probab=52.40 E-value=31 Score=24.37 Aligned_cols=30 Identities=10% Similarity=-0.133 Sum_probs=20.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 544 FKLSVDCLELRAWLFIAADDYESALRDTLA 573 (754)
Q Consensus 544 l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~ 573 (754)
+.||...|...-..+.+.|+.++|++.|++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 356666666666677777777777776653
No 403
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=52.32 E-value=25 Score=36.69 Aligned_cols=34 Identities=21% Similarity=0.064 Sum_probs=24.3
Q ss_pred hHHHhHHHHHH---------HcCCHHHHHHHHHHHHhcCCCch
Q 004426 641 FLRFRQSLLLL---------RLNCQKAAMRCLRLARNHSSSEH 674 (754)
Q Consensus 641 ~~~~~~g~~L~---------~lg~~eeAl~~~~~Al~l~P~~~ 674 (754)
.+|--.|.+++ ..+.++.|+..+++|++++|+-+
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 34444566663 34678889999999999998854
No 404
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.13 E-value=23 Score=42.87 Aligned_cols=77 Identities=23% Similarity=0.257 Sum_probs=53.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCChH-HHHHHHHHhhccCCCCC
Q 004426 649 LLLRLNCQKAAMRCLRLARNHSSSE-HERLVYEGWILYDTGHREEALSRAEKSIS-IERTFE-AFFLKAYILADTNLDPE 725 (754)
Q Consensus 649 ~L~~lg~~eeAl~~~~~Al~l~P~~-~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~-l~~~~~-a~~~~~~~~~~~~~~~~ 725 (754)
.+.+.+-++-|+...+. ..++++. ++.+...|--||..|+|++|...|-++|. ++||+. -+| ||++
T Consensus 343 iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf----------Ldaq 411 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF----------LDAQ 411 (933)
T ss_pred HHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh----------cCHH
Confidence 45555666656554332 2333332 56778899999999999999999999998 599988 666 5555
Q ss_pred chhHHHHHHHH
Q 004426 726 SSTYVIQLLEE 736 (754)
Q Consensus 726 ~~~~~~~~~~~ 736 (754)
.=.-.+..||.
T Consensus 412 ~IknLt~YLe~ 422 (933)
T KOG2114|consen 412 RIKNLTSYLEA 422 (933)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 405
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=51.93 E-value=14 Score=39.86 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=44.6
Q ss_pred HHHHHHHcCCCChhHHHh-HHHHHHHcCCHHHHHHHHHHHHhcCCCchhHH
Q 004426 628 VINQMLINDPGKSFLRFR-QSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 677 (754)
Q Consensus 628 ~~~~aL~l~P~~~~~~~~-~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 677 (754)
++.++|...|.++++|.. -+.-+.-.++.+.+...+.+++++||+++-.+
T Consensus 129 I~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 129 IFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred HHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 689999999999999987 66777889999999999999999999998543
No 406
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=51.38 E-value=43 Score=36.13 Aligned_cols=57 Identities=19% Similarity=0.028 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 519 KYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALL 575 (754)
Q Consensus 519 ~~rg~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd~~~Al~d~~~al 575 (754)
...+..+.+-|.+.+|++..+|++.++| +-..+...-.++..+||--.|+.-|++--
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4456678889999999999999999999 55656667788999999999988887643
No 407
>PRK11619 lytic murein transglycosylase; Provisional
Probab=51.27 E-value=5.2e+02 Score=31.29 Aligned_cols=172 Identities=10% Similarity=0.034 Sum_probs=108.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhc
Q 004426 524 AKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR 602 (754)
Q Consensus 524 ~l~~lg~~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~ 602 (754)
+-+..++.+.+...+++.-.-.- .....|.+|.++.++|+-++|...|+++.. .. .|||..++..+........
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~-~~---~fYG~LAa~~Lg~~~~~~~- 395 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ-QR---GFYPMVAAQRLGEEYPLKI- 395 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc-CC---CcHHHHHHHHcCCCCCCCC-
Confidence 33378888777666666321111 245567788888889999999999999855 33 3678887776532111000
Q ss_pred cccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 004426 603 SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW 682 (754)
Q Consensus 603 ~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~ 682 (754)
... . . -.+.+...| -..++..|..+|...+|.+-.+.+++. . +.+-+...+.
T Consensus 396 --~~~-------------~----~--~~~~~~~~~-----~~~ra~~L~~~g~~~~a~~ew~~~~~~-~-~~~~~~~la~ 447 (644)
T PRK11619 396 --DKA-------------P----K--PDSALTQGP-----EMARVRELMYWNMDNTARSEWANLVAS-R-SKTEQAQLAR 447 (644)
T ss_pred --CCC-------------C----c--hhhhhccCh-----HHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CHHHHHHHHH
Confidence 000 0 0 112222222 356888999999999999999988886 3 3456677777
Q ss_pred HHHHcCCHHHHHHHHHHHHhc------CC--------------ChHHHHHHHHHhhccCCCCCchh
Q 004426 683 ILYDTGHREEALSRAEKSISI------ER--------------TFEAFFLKAYILADTNLDPESST 728 (754)
Q Consensus 683 ~ly~~G~~eeAl~~~e~Ai~l------~~--------------~~~a~~~~~~~~~~~~~~~~~~~ 728 (754)
+-.+.|.++-|+....++-.. =| ..+.-++.|++--.|+.||..-|
T Consensus 448 ~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 448 YAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred HHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcc
Confidence 788889988888766554321 01 11124556777778888887533
No 408
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=49.91 E-value=1.4e+02 Score=32.79 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=55.2
Q ss_pred hhhHhhccchHHHHHHHHHHhhhcchhhhh----hHHHHHHHhCCHHHHHHHHHHHHHccCC-----CHHHHHHhhhcCC
Q 004426 426 GCVMFEREEYKDACYYFEAAADAGHIYSLA----GLARAKYKVGQQYSAYKLINSIISEHKP-----TGWMYQERSLYNL 496 (754)
Q Consensus 426 G~v~~~~g~~~eA~~~f~~AL~~~~~~a~~----~larv~~~~G~~~~A~~~~~~aI~~~~~-----~g~ay~~r~~y~~ 496 (754)
+...-..|++.||++.|+...+--+..... ++-.+... -+|+.+....+..+.+ .+.+-+--++.
T Consensus 282 AMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE----~QAYADvqavLakYDdislPkSA~icYTaALL-- 355 (556)
T KOG3807|consen 282 AMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLE----LQAYADVQAVLAKYDDISLPKSAAICYTAALL-- 355 (556)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhccccCcchHHHHHHHHHH--
Confidence 344456788899998887644432322211 22112221 2467777777766543 22222221111
Q ss_pred hhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004426 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS 547 (754)
Q Consensus 497 g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~ 547 (754)
++ =.-+.++.| +.-..||..-.++ .|++.+.||+++||+
T Consensus 356 --K~---RAVa~kFsp---d~asrRGLS~AE~----~AvEAihRAvEFNPH 394 (556)
T KOG3807|consen 356 --KT---RAVSEKFSP---ETASRRGLSTAEI----NAVEAIHRAVEFNPH 394 (556)
T ss_pred --HH---HHHHhhcCc---hhhhhccccHHHH----HHHHHHHHHhhcCCC
Confidence 00 011223333 4556677666654 489999999999998
No 409
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=49.28 E-value=1.3e+02 Score=31.51 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=24.2
Q ss_pred HcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhh
Q 004426 560 AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV 601 (754)
Q Consensus 560 ~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~ 601 (754)
..++...|+..+++|+++||+ .++......+...+
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k-------~GVK~~i~~l~~~l 224 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDK-------CGVKKDIERLERRL 224 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCC-------CChHHHHHHHHHHH
Confidence 456788999999999999997 44444444444433
No 410
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=48.95 E-value=28 Score=37.72 Aligned_cols=85 Identities=6% Similarity=0.045 Sum_probs=74.9
Q ss_pred HHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY-EGWILYDTGHREEALSRAEKSISIERT 706 (754)
Q Consensus 628 ~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~-~G~~ly~~G~~eeAl~~~e~Ai~l~~~ 706 (754)
.+.|+----|+++..|..-+.--.+.+-+.+--..|.+++...|.|++.+.+ ...=+..-++++.+-+.+.++++++|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 5677788889999999988888888899999999999999999999999888 666778889999999999999999887
Q ss_pred hH----HHHH
Q 004426 707 FE----AFFL 712 (754)
Q Consensus 707 ~~----a~~~ 712 (754)
.. +||-
T Consensus 175 ~p~iw~eyfr 184 (435)
T COG5191 175 SPRIWIEYFR 184 (435)
T ss_pred CchHHHHHHH
Confidence 65 5653
No 411
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=48.88 E-value=2.2e+02 Score=34.11 Aligned_cols=71 Identities=13% Similarity=0.043 Sum_probs=46.3
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 504 LNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 504 l~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
++-+-++|-..-++....+.-+..++.+.-|-+.|.+.=..+ ..-.++...++|.+|.+.-++--++-|+-
T Consensus 736 idI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~k-------siVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 736 IDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLK-------SLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHH-------HHhhheeecccchHhHhhhhhCccccccc
Confidence 455556666667777777777777777776766665543111 12246778889999988777766666653
No 412
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=47.90 E-value=24 Score=30.13 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004426 517 PYKYRAVAKMEEGQIRAAISEIDRIIV 543 (754)
Q Consensus 517 ay~~rg~~l~~lg~~~eAl~~~~rAl~ 543 (754)
-|..+|+-+-..|++++|+..|+.+|+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345555556667777777777766663
No 413
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.66 E-value=39 Score=33.82 Aligned_cols=51 Identities=16% Similarity=0.028 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 530 QIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESN 580 (754)
Q Consensus 530 ~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~ 580 (754)
..+..++...+.+...|++..+...+.++...||.++|.+..+++..+-|.
T Consensus 126 ~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 355666777788888898888888888999999999999999999999984
No 414
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.38 E-value=54 Score=32.76 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (754)
Q Consensus 626 l~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 671 (754)
+...++.+...| ++..+.+.+.++..+|+.++|.+..+++..+-|
T Consensus 131 ~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 131 IEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 445666666667 466677777777777777777777777777777
No 415
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=43.67 E-value=70 Score=24.38 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 004426 519 KYRAVAKMEEGQIRAAISEIDRIIV 543 (754)
Q Consensus 519 ~~rg~~l~~lg~~~eAl~~~~rAl~ 543 (754)
.++|.+|+++|+.+.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777777777777777777774
No 416
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=42.01 E-value=2.4e+02 Score=34.11 Aligned_cols=61 Identities=10% Similarity=-0.020 Sum_probs=47.4
Q ss_pred ChhHHHhHHHHHHHcCCHHHHHHHHHHH----------------------HhcCCCchhHHHHHHHHHHHcCCHHHHHHH
Q 004426 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLA----------------------RNHSSSEHERLVYEGWILYDTGHREEALSR 696 (754)
Q Consensus 639 ~~~~~~~~g~~L~~lg~~eeAl~~~~~A----------------------l~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ 696 (754)
.-+++.+.|.....+-.+++|...|.+. .+--|++.+.+-..|..+-.-|-.++|++.
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a 874 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEA 874 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHH
Confidence 3457778888887777777777766543 344588888999999999999999999998
Q ss_pred HHH
Q 004426 697 AEK 699 (754)
Q Consensus 697 ~e~ 699 (754)
|-|
T Consensus 875 ~Lr 877 (1189)
T KOG2041|consen 875 YLR 877 (1189)
T ss_pred HHh
Confidence 865
No 417
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=41.32 E-value=29 Score=30.70 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=28.5
Q ss_pred HhhHHHHHHHhhhhchHHHHHHHHHHHHhh
Q 004426 321 IEDALILIDYGLEERATLLVASCLQVLLRE 350 (754)
Q Consensus 321 ~~n~l~il~~A~~~~~~~L~~~cl~~i~~n 350 (754)
.+++..++.+|..++.+.|.+.|..++.+|
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 689999999999999999999999999876
No 418
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=39.25 E-value=1.3e+02 Score=33.95 Aligned_cols=151 Identities=15% Similarity=0.097 Sum_probs=73.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHc
Q 004426 556 WLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN 635 (754)
Q Consensus 556 ~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l 635 (754)
.-+...++|..|.+-|+.+++..++.. ..++++...-+...|..|...+-.+|...++..+.-
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~-----------------~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~ 200 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAV-----------------NHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPE 200 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChh-----------------hhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccch
Confidence 356777888888888888888765420 011122222334667777777766677777653221
Q ss_pred CCCChhHHHhHHH-HHHHcCCHHHHH-H---HHHHHHhcCCCchh--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 636 DPGKSFLRFRQSL-LLLRLNCQKAAM-R---CLRLARNHSSSEHE--RLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 636 ~P~~~~~~~~~g~-~L~~lg~~eeAl-~---~~~~Al~l~P~~~e--a~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
.....+.++.... .+.+....=.+. + .....-...|-..- =+++=+..-...|+|+.|+...=|++++- .
T Consensus 201 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~---~ 277 (380)
T TIGR02710 201 RLALYQVTSHDELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELI---V 277 (380)
T ss_pred hhhhhhhhhhhHHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH---H
Confidence 1112222222110 011111000010 0 00111111111111 11222334558899999999999998872 3
Q ss_pred HHHH-H--HHHhhccCCCCCc
Q 004426 709 AFFL-K--AYILADTNLDPES 726 (754)
Q Consensus 709 a~~~-~--~~~~~~~~~~~~~ 726 (754)
.+.+ + ++-+-+++++|+-
T Consensus 278 q~~l~~~~~~~l~~~~~~~~~ 298 (380)
T TIGR02710 278 QIRLEERGKYGLDTDSINPDG 298 (380)
T ss_pred HHHHHHccCCCCCCCcCChhh
Confidence 4444 2 5666666666653
No 419
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.60 E-value=1e+02 Score=36.69 Aligned_cols=88 Identities=11% Similarity=0.169 Sum_probs=69.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH---HHHHHHH
Q 004426 645 RQSLLLLRLNCQKAAMRCLRLARNHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISIERTFE---AFFLKAY 715 (754)
Q Consensus 645 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~---a~~~~~~ 715 (754)
|.|--+.++.+++.|++.|...++--|.+ +-...++..||+.+.+.|.|+..|++|=+-+|... -+-+++.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 46667788999999999999999988876 44567888999999999999999999999997655 4556788
Q ss_pred HhhccCCCCCchhHHHHHHH
Q 004426 716 ILADTNLDPESSTYVIQLLE 735 (754)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~ 735 (754)
+-+|.| +...+|++-++
T Consensus 439 ~~E~~S---e~AL~~~~~~~ 455 (872)
T KOG4814|consen 439 LAEDKS---EEALTCLQKIK 455 (872)
T ss_pred HHhcch---HHHHHHHHHHH
Confidence 877754 34444444443
No 420
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=38.52 E-value=7.2e+02 Score=29.50 Aligned_cols=85 Identities=22% Similarity=0.169 Sum_probs=56.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCch-----hHHHHHHHHH------------HHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004426 653 LNCQKAAMRCLRLARNHSSSEH-----ERLVYEGWIL------------YDTGHREEALSRAEKSISIERTFEAFFLKAY 715 (754)
Q Consensus 653 lg~~eeAl~~~~~Al~l~P~~~-----ea~~~~G~~l------------y~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~ 715 (754)
-+..+++.......-+..|+++ ++|.+.--.+ ..-|+.+||+...|+-..--+..-.|.++|-
T Consensus 271 ~~~qee~~~~~s~~~ek~~s~p~~~~fn~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~c~~~~~~lpi~~~~~ 350 (547)
T PF14929_consen 271 YQPQEEYRESLSNYAEKFPSNPGRSIFNAYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKFCISSTCALPIRLRAH 350 (547)
T ss_pred CCcHHHHHHHHhhccccccCccccchhHHHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHhccCCCccchHHHHHH
Confidence 3444455544433335555555 4444444444 3348999999888887766777778888888
Q ss_pred HhhccCCCCCchhHHHHHHHHHhc
Q 004426 716 ILADTNLDPESSTYVIQLLEEALR 739 (754)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~ 739 (754)
.|. ..|.+-+++.++-+|+.++
T Consensus 351 lle--~~d~~~~~~l~~~~e~~~~ 372 (547)
T PF14929_consen 351 LLE--YFDQNNSSVLSSCLEDCLK 372 (547)
T ss_pred HHH--HhCcccHHHHHHHHHHHhc
Confidence 886 4677788888888888764
No 421
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=38.47 E-value=33 Score=29.27 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=8.3
Q ss_pred CCHHHHHHHHHHHHh
Q 004426 688 GHREEALSRAEKSIS 702 (754)
Q Consensus 688 G~~eeAl~~~e~Ai~ 702 (754)
|+|++|+..|.++|.
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555554
No 422
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.98 E-value=61 Score=36.70 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-------HHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 517 PYKYRAVAKMEEGQIRAAISEIDRI-------IVFKLS--VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 517 ay~~rg~~l~~lg~~~eAl~~~~rA-------l~l~p~--~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
+...+.-++.-+|+|..|+..++-+ ..--|. ...+|.-|.+|..++||.+|++.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777789999999876532 111121 23468899999999999999999999886
No 423
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=36.73 E-value=1e+02 Score=37.47 Aligned_cols=116 Identities=17% Similarity=0.183 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc----cccchhhhHHHHHHhhhhccccch
Q 004426 532 RAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMM----FHGRVSGDHLVKLLNHHVRSWSPA 607 (754)
Q Consensus 532 ~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~----~~~~~~~~~~~~~l~~~~~~~~~A 607 (754)
+++...+.|++++.- -+..++..+++.+|.--|..++.+-|.... .+.+. +
T Consensus 44 ~di~v~l~ra~~~~~-------E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~------------------~ 98 (748)
T KOG4151|consen 44 EDIEVFLSRALELKE-------EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQ------------------A 98 (748)
T ss_pred cchHHHHHHHHHHHh-------hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHH------------------H
Confidence 455566666664332 345677888999999999999999995421 11111 1
Q ss_pred hhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHH
Q 004426 608 DCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 677 (754)
Q Consensus 608 ~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 677 (754)
.|.|+. ..+++. +....+-|+...|+-..+.+.|+.++..+++.+-|+++.+-.....|.+.++.
T Consensus 99 s~~m~~-----~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~ 164 (748)
T KOG4151|consen 99 SCYMQL-----GLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSAS 164 (748)
T ss_pred HHHhhc-----CccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 121111 112222 34455667777777777777777777777777777777777777777775553
No 424
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.63 E-value=9.9e+02 Score=30.93 Aligned_cols=128 Identities=18% Similarity=0.148 Sum_probs=69.7
Q ss_pred HhhhhhhHhhccchHHHHHHHHHHhhh-cchhhhhhHHHHHH--------HhCCH----HHHHHHHHHHHHccCCCHHHH
Q 004426 422 LHQLGCVMFEREEYKDACYYFEAAADA-GHIYSLAGLARAKY--------KVGQQ----YSAYKLINSIISEHKPTGWMY 488 (754)
Q Consensus 422 l~~LG~v~~~~g~~~eA~~~f~~AL~~-~~~~a~~~larv~~--------~~G~~----~~A~~~~~~aI~~~~~~g~ay 488 (754)
-+-+|..++.+|+..+|+.+|.+|..- +...++..+ ++. ..|+. ..|...|.+++.+-.
T Consensus 923 rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~l--v~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle------ 994 (1480)
T KOG4521|consen 923 RFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKL--VYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLE------ 994 (1480)
T ss_pred HHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHH--HHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHH------
Confidence 355788899999999999999988765 333332222 222 33432 113444555544331
Q ss_pred HHhhhcCChhhHHHHHHHHHhhC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHH
Q 004426 489 QERSLYNLGREKIVDLNYASELD----PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV----DCLELRAWLFIA 560 (754)
Q Consensus 489 ~~r~~y~~g~eAl~dl~kAi~Ld----P~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~----~~~~~ra~~~~~ 560 (754)
.++..+++..--.+||+-- |..+-.+.+.-+-+.++|.+.+|.. ||--+|+. +|+...-.++.+
T Consensus 995 ----~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~----ai~~npdserrrdcLRqlvivLfe 1066 (1480)
T KOG4521|consen 995 ----EHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYK----AILRNPDSERRRDCLRQLVIVLFE 1066 (1480)
T ss_pred ----HhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHH----HHHcCCcHHHHHHHHHHHHHHHHh
Confidence 2333355555444555433 3334555566666677787777764 34446752 333333345666
Q ss_pred cCCHH
Q 004426 561 ADDYE 565 (754)
Q Consensus 561 lgd~~ 565 (754)
-|.++
T Consensus 1067 cg~l~ 1071 (1480)
T KOG4521|consen 1067 CGELE 1071 (1480)
T ss_pred ccchH
Confidence 66554
No 425
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=35.29 E-value=72 Score=24.33 Aligned_cols=30 Identities=20% Similarity=0.080 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 678 VYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 678 ~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
+.++.+|+.+|+.+.|-...++.++ +.+|+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~-~~~~~ 32 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE-EGDEA 32 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH-cCCHH
Confidence 4677778888888888888888774 45543
No 426
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=34.94 E-value=1.1e+02 Score=36.03 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=31.9
Q ss_pred HHHHHHHHHh-----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004426 500 KIVDLNYASE-----LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV 543 (754)
Q Consensus 500 Al~dl~kAi~-----LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~ 543 (754)
+++.|++||. ++-.+.++|.++|.-+.+.++|.+|+..|-.|-.
T Consensus 298 ~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 298 PLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555543 4566789999999999999999999999888753
No 427
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.83 E-value=1.8e+02 Score=35.36 Aligned_cols=144 Identities=15% Similarity=0.067 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHHHcCCC--HHHHHHHHHH---------HHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHH
Q 004426 529 GQIRAAISEIDRIIVFKLS--VDCLELRAWL---------FIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 597 (754)
Q Consensus 529 g~~~eAl~~~~rAl~l~p~--~~~~~~ra~~---------~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l 597 (754)
|+-+.|+...-.+++.+-. |+.+-.-|.+ |...+..+.|+.+|++|.+..|.- -++-++..++
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~------~sGIN~atLL 330 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE------YSGINLATLL 330 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh------hccccHHHHH
Confidence 4555555555555554321 3322222222 334456677888888888888864 2334445555
Q ss_pred hhhhccccchhhhhhhhhccccc-cccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 004426 598 NHHVRSWSPADCWIKLYDRWSSV-DDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER 676 (754)
Q Consensus 598 ~~~~~~~~~A~~~~~l~~~~~~~-~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 676 (754)
...-+.++...=+-+++-++.+. ++.|++.-+..= |++-.||.-+ ...|++..|+.....-..++|-..+.
T Consensus 331 ~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~Y-----WdV~~y~~as---VLAnd~~kaiqAae~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 331 RAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEY-----WDVATYFEAS---VLANDYQKAIQAAEMMFKLKPPVWYL 402 (1226)
T ss_pred HHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHH-----HhHHHhhhhh---hhccCHHHHHHHHHHHhccCCceehH
Confidence 66666666665555555555543 444444422221 2223333322 23577778888888888888877666
Q ss_pred HHHHHHHHHH
Q 004426 677 LVYEGWILYD 686 (754)
Q Consensus 677 ~~~~G~~ly~ 686 (754)
--..+.+++.
T Consensus 403 kS~meni~l~ 412 (1226)
T KOG4279|consen 403 KSTMENILLI 412 (1226)
T ss_pred HHHHHHHHHH
Confidence 5566666543
No 428
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.82 E-value=8.2e+02 Score=28.81 Aligned_cols=71 Identities=18% Similarity=0.046 Sum_probs=59.0
Q ss_pred CCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC--CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCC
Q 004426 511 DPTLSF-PYKYRAVAKMEEGQIRAAISEIDRIIVF------KL--SVDCLELRAWLFIAADD-YESALRDTLALLALESN 580 (754)
Q Consensus 511 dP~~~~-ay~~rg~~l~~lg~~~eAl~~~~rAl~l------~p--~~~~~~~ra~~~~~lgd-~~~Al~d~~~al~l~P~ 580 (754)
|+++.- -|.-.|.++..+|+...|-..|+.+++- +| -|.++|-+|.++..+|. .++|.+.+.+|-+-..+
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 454443 3556899999999999999999999832 33 26778999999999999 99999999999998888
Q ss_pred c
Q 004426 581 Y 581 (754)
Q Consensus 581 ~ 581 (754)
|
T Consensus 524 Y 524 (546)
T KOG3783|consen 524 Y 524 (546)
T ss_pred c
Confidence 7
No 429
>PF13041 PPR_2: PPR repeat family
Probab=34.42 E-value=1.6e+02 Score=22.23 Aligned_cols=38 Identities=11% Similarity=0.030 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCHHHH
Q 004426 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVF--KLSVDCL 551 (754)
Q Consensus 514 ~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l--~p~~~~~ 551 (754)
+...|..+-..+.+.|++++|+.-|++..+- .|+...+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty 41 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTY 41 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 3456777777888888888888888888876 4444444
No 430
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=33.50 E-value=4.5e+02 Score=28.45 Aligned_cols=57 Identities=4% Similarity=-0.118 Sum_probs=33.6
Q ss_pred HHHHHcCCCChhHHHhH---HHHHHHcCC------HHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 004426 630 NQMLINDPGKSFLRFRQ---SLLLLRLNC------QKAAMRCLRLARNHSSSEHERLVYEGWILYD 686 (754)
Q Consensus 630 ~~aL~l~P~~~~~~~~~---g~~L~~lg~------~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~ 686 (754)
.-.|+.||.|..+|..+ =......|. .++=+...-.++-.+|++-.+..++-|+.-.
T Consensus 174 t~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 174 TSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhcc
Confidence 44566666666666655 222222221 4555666667777888888877777666433
No 431
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=33.47 E-value=75 Score=26.17 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004426 518 YKYRAVAKMEEGQIRAAISEIDRIIV 543 (754)
Q Consensus 518 y~~rg~~l~~lg~~~eAl~~~~rAl~ 543 (754)
+..+|.-.-+.|++++|+..|..++.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35555556666777777776666663
No 432
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.13 E-value=2.6e+02 Score=31.47 Aligned_cols=62 Identities=24% Similarity=0.207 Sum_probs=51.0
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchh----HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE----RLVYEGWILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 642 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e----a~~~~G~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
....++..+...+++.+|.+.++...+--|.+.+ ....+|.-..+..++++|+..+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5667888889999999999999999985344333 5566788889999999999999998875
No 433
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=33.03 E-value=72 Score=26.28 Aligned_cols=25 Identities=8% Similarity=0.033 Sum_probs=14.2
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 644 FRQSLLLLRLNCQKAAMRCLRLARN 668 (754)
Q Consensus 644 ~~~g~~L~~lg~~eeAl~~~~~Al~ 668 (754)
.++|.-....|++++|+..|+.|++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4445555556666666666665553
No 434
>PF13041 PPR_2: PPR repeat family
Probab=32.94 E-value=1.2e+02 Score=22.95 Aligned_cols=36 Identities=17% Similarity=-0.045 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCChHHHH
Q 004426 676 RLVYEGWILYDTGHREEALSRAEKSIS--IERTFEAFF 711 (754)
Q Consensus 676 a~~~~G~~ly~~G~~eeAl~~~e~Ai~--l~~~~~a~~ 711 (754)
.+..+=..+.+.|++++|++.|++-.+ +.|+.-.|.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~ 42 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYN 42 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 444555567778888888888888777 477777654
No 435
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=32.91 E-value=57 Score=28.18 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=11.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 004426 646 QSLLLLRLNCQKAAMRCLRLARN 668 (754)
Q Consensus 646 ~g~~L~~lg~~eeAl~~~~~Al~ 668 (754)
+|+.....|..++|+..|+++++
T Consensus 14 kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 14 KALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHhhhhhcCCHHHHHHHHHHHHH
Confidence 33333444555555555555554
No 436
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=32.68 E-value=6.7e+02 Score=28.40 Aligned_cols=105 Identities=14% Similarity=0.014 Sum_probs=53.2
Q ss_pred CCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCC-C-H-----HHHHHHHHHHHHcCC--------------HHHHH
Q 004426 511 DPTLSFPYK-YRAVAKMEEGQIRAAISEIDRIIVFKL-S-V-----DCLELRAWLFIAADD--------------YESAL 568 (754)
Q Consensus 511 dP~~~~ay~-~rg~~l~~lg~~~eAl~~~~rAl~l~p-~-~-----~~~~~ra~~~~~lgd--------------~~~Al 568 (754)
.++.++..+ .+|.....+|+|+-|...|+-+.+--- + . .+.+.-+.++...+. +|.|.
T Consensus 203 ~~~S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~ 282 (414)
T PF12739_consen 203 SADSPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAY 282 (414)
T ss_pred CCCChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHH
Confidence 344444444 377888888999999888888775311 1 1 112223333333331 34555
Q ss_pred HHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhc
Q 004426 569 RDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDR 616 (754)
Q Consensus 569 ~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~ 616 (754)
..|.++-.. +-....+.-..+.....++......++.++.|++....
T Consensus 283 ~~Y~~~~~~-~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 283 YTYLKSALP-RCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHhhhcc-ccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 556553211 01111112224455555555666666666666665555
No 437
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=32.43 E-value=45 Score=38.09 Aligned_cols=44 Identities=11% Similarity=0.258 Sum_probs=37.6
Q ss_pred cCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCchhhhhhcc
Q 004426 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFC 365 (754)
Q Consensus 318 i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~e~f~~Ll~ 365 (754)
+. .+||+.++..|+.|..+.|.+.|.+||.+|+.. ...|+.|..
T Consensus 185 ~~-~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~---~naf~~L~q 228 (521)
T KOG2075|consen 185 LA-ADTVITTLYAAKKYLVPALERQCVKFLRKNLMA---DNAFLELFQ 228 (521)
T ss_pred hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---hHHHHHHHH
Confidence 45 899999999999999999999999999998765 456766643
No 438
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.34 E-value=2.5e+02 Score=31.60 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=16.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCC
Q 004426 558 FIAADDYESALRDTLALLALES 579 (754)
Q Consensus 558 ~~~lgd~~~Al~d~~~al~l~P 579 (754)
....|+|++|+.-+=+++++--
T Consensus 251 Ra~~gryddAvarlYR~lEl~~ 272 (379)
T PF09670_consen 251 RAAQGRYDDAVARLYRALELLA 272 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHHHH
Confidence 3567888888888777777643
No 439
>PF12854 PPR_1: PPR repeat
Probab=31.88 E-value=86 Score=22.06 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=24.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 514 LSFPYKYRAVAKMEEGQIRAAISEIDR 540 (754)
Q Consensus 514 ~~~ay~~rg~~l~~lg~~~eAl~~~~r 540 (754)
+...|..+-..+.+.|+.++|+.-|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 567889999999999999999998875
No 440
>PF13934 ELYS: Nuclear pore complex assembly
Probab=31.29 E-value=6.1e+02 Score=26.24 Aligned_cols=157 Identities=20% Similarity=0.130 Sum_probs=90.7
Q ss_pred HHHHHHHHHcCCHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHH
Q 004426 519 KYRAVAKMEEGQIR-----AAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 593 (754)
Q Consensus 519 ~~rg~~l~~lg~~~-----eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~ 593 (754)
...+.+|.=+.+++ ++...|-++..+.++.. ...+|..+..-+++++|+..+-.. .+.|++
T Consensus 45 ~K~~l~~YlLlD~~~~~~~~~~~~Fa~~f~ip~~~~-~~~~g~W~LD~~~~~~A~~~L~~p-s~~~~~------------ 110 (226)
T PF13934_consen 45 KKHSLFYYLLLDLDDTRPSELAESFARAFGIPPKYI-KFIQGFWLLDHGDFEEALELLSHP-SLIPWF------------ 110 (226)
T ss_pred HhHHHHHHHHHhcCccccccHHHHHHHHhCCCHHHH-HHHHHHHHhChHhHHHHHHHhCCC-CCCccc------------
Confidence 44444444443433 57888888887766543 356777777778888888876222 112222
Q ss_pred HHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (754)
Q Consensus 594 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 673 (754)
.-..-.+|...|++..|++.++. ..-...+
T Consensus 111 -------------------------------------------------~~~Il~~L~~~~~~~lAL~y~~~-~~p~l~s 140 (226)
T PF13934_consen 111 -------------------------------------------------PDKILQALLRRGDPKLALRYLRA-VGPPLSS 140 (226)
T ss_pred -------------------------------------------------HHHHHHHHHHCCChhHHHHHHHh-cCCCCCC
Confidence 11122344556888878777654 5555566
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCChHHHH----------HHHHHhhccCCCCCchhHHHHHHHHHhcCC
Q 004426 674 HERLVYEGWILYDTGHREEALSRAEKSISI--ERTFEAFF----------LKAYILADTNLDPESSTYVIQLLEEALRCP 741 (754)
Q Consensus 674 ~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l--~~~~~a~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (754)
.++....-.+ ...|...|||...++--.- .+.++.++ .+.-.|.+=.+|++.-..+.+.|. .||
T Consensus 141 ~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE~~l~~~L~---~~~ 216 (226)
T PF13934_consen 141 PEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEEQWLEKYLR---ESP 216 (226)
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHHHHHHHHHc---cCC
Confidence 6665544444 6668888888665555442 34555433 233345555666666666666554 455
Q ss_pred CC
Q 004426 742 SD 743 (754)
Q Consensus 742 ~~ 743 (754)
+.
T Consensus 217 ~~ 218 (226)
T PF13934_consen 217 GR 218 (226)
T ss_pred Cc
Confidence 43
No 441
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=30.91 E-value=2.2e+02 Score=26.67 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCChhHHHhHHHHHHH---cCCHHHHHHHHHHHHhcCCCchhHHHHHHHH--HHHcCCHHHHHHHHHHH
Q 004426 626 LAVINQMLINDPGKSFLRFRQSLLLLR---LNCQKAAMRCLRLARNHSSSEHERLVYEGWI--LYDTGHREEALSRAEKS 700 (754)
Q Consensus 626 l~~~~~aL~l~P~~~~~~~~~g~~L~~---lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~--ly~~G~~eeAl~~~e~A 700 (754)
..++++++..-..+...++..=.+-.. .....++...|.......=-..-|.++..|+ +...|++++|-+.|+++
T Consensus 46 ~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 46 LELLERCIRKFKDDERYKNDERYLKIWIKYADLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q ss_pred H
Q 004426 701 I 701 (754)
Q Consensus 701 i 701 (754)
|
T Consensus 126 i 126 (126)
T PF08311_consen 126 I 126 (126)
T ss_dssp H
T ss_pred C
No 442
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.83 E-value=9.9e+02 Score=28.52 Aligned_cols=149 Identities=19% Similarity=0.141 Sum_probs=89.2
Q ss_pred ccchHHHHHHHHHHhhh-c-------------chhhhhhHHHHHHHhCCHHHHHHHHHHHHHc-----cCC---------
Q 004426 432 REEYKDACYYFEAAADA-G-------------HIYSLAGLARAKYKVGQQYSAYKLINSIISE-----HKP--------- 483 (754)
Q Consensus 432 ~g~~~eA~~~f~~AL~~-~-------------~~~a~~~larv~~~~G~~~~A~~~~~~aI~~-----~~~--------- 483 (754)
...|++|+..|..|... + |.+++..++.+...+|+.+-|-....+++-. +|.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34678888888877765 1 2345666788888899988887776665421 111
Q ss_pred CHHHH-HHhhh-----------cCCh--hhHHHHHHHHHhhCCC-ChHHHHHHHHHHHHc-CCHHHHHHHHHHH-----H
Q 004426 484 TGWMY-QERSL-----------YNLG--REKIVDLNYASELDPT-LSFPYKYRAVAKMEE-GQIRAAISEIDRI-----I 542 (754)
Q Consensus 484 ~g~ay-~~r~~-----------y~~g--~eAl~dl~kAi~LdP~-~~~ay~~rg~~l~~l-g~~~eAl~~~~rA-----l 542 (754)
+...+ .+|.. -.+| +-|++...-.+.|||. ++.+-...-.+|.-. .+|+==|.-++.. |
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 11111 12211 1233 7788888889999999 776655555444332 3333323333322 2
Q ss_pred HcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC
Q 004426 543 VFKLSVDCLELRAWLFIAADD---YESALRDTLALLALESN 580 (754)
Q Consensus 543 ~l~p~~~~~~~ra~~~~~lgd---~~~Al~d~~~al~l~P~ 580 (754)
.+=|+...-...+.+|..... -+.|+.++.+|++.-|.
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 233553322345555555555 78999999999999994
No 443
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=30.81 E-value=2.3e+02 Score=27.32 Aligned_cols=30 Identities=27% Similarity=0.131 Sum_probs=13.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 552 ELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 552 ~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
..++.-....||+.-|....+.++..+|++
T Consensus 74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n 103 (141)
T PF14863_consen 74 LERAQAALAAGDYQWAAELLDHLVFADPDN 103 (141)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCc
Confidence 333344444555555555555555555554
No 444
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=30.58 E-value=2.2e+02 Score=34.03 Aligned_cols=47 Identities=13% Similarity=-0.041 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (754)
Q Consensus 653 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~ 702 (754)
.+++.||.+..++-=++-| +.|+-.|.-|...++|+||-+.|.||-+
T Consensus 786 ~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 786 TQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred cccchHhHhhhhhCccccc---cccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 3444555555444333333 4677888889999999999999988754
No 445
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.47 E-value=3.7e+02 Score=33.68 Aligned_cols=97 Identities=18% Similarity=0.101 Sum_probs=62.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchhHH------HHHHHHHHHcCCHHHHHHHHHHHHhc--CCChH--HHHHHHHHh
Q 004426 648 LLLLRLNCQKAAMRCLRLARNHSSSEHERL------VYEGWILYDTGHREEALSRAEKSISI--ERTFE--AFFLKAYIL 717 (754)
Q Consensus 648 ~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~------~~~G~~ly~~G~~eeAl~~~e~Ai~l--~~~~~--a~~~~~~~~ 717 (754)
..+..-|-+.+|+++|++|+..-+..++.+ +..|- -|.+-.-|.|-..+++.+.. ..|.. ..|||-|.-
T Consensus 324 ~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~-~y~l~~~D~a~~~f~~~i~~~~kqS~~~q~~FLRl~~~ 402 (960)
T KOG1938|consen 324 IRFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILH-VYLLCQEDDADEEFSKLIADCMKQSKGLQTEFLRLYSN 402 (960)
T ss_pred hhcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHH-hhhhhcchhHHHHHHHHHhhhhhcChHHHHHHHHHHHH
Confidence 344556779999999999999888765432 22222 23334467777778887774 44444 778888888
Q ss_pred hccCCCCCc-----------hhHHHHHHHHHhcCCCCCc
Q 004426 718 ADTNLDPES-----------STYVIQLLEEALRCPSDGL 745 (754)
Q Consensus 718 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 745 (754)
.++..=+.+ +..=+..+...=.||+|+.
T Consensus 403 ~~s~~~~~t~v~~l~~lp~l~~e~~~vi~~~~~~~t~~e 441 (960)
T KOG1938|consen 403 KDSFIYDHTPVVQLPQLPMLSMEERLVILSEPTRSTDAE 441 (960)
T ss_pred HhhcccccCCccccCCcchhhhhHHHHHhcCCCCCcchh
Confidence 777654443 3333445566667777764
No 446
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=29.99 E-value=71 Score=26.78 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 656 QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (754)
Q Consensus 656 ~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~ 702 (754)
.+.|+....+|++.+-. |++++|+..|.+|+.
T Consensus 3 ~~~a~~l~~~Av~~D~~---------------g~~~~Al~~Y~~a~e 34 (75)
T cd02656 3 LQQAKELIKQAVKEDED---------------GNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHHHHHHc---------------CCHHHHHHHHHHHHH
No 447
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=29.94 E-value=6e+02 Score=28.69 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 004426 688 GHREEALSRAEKSISIER 705 (754)
Q Consensus 688 G~~eeAl~~~e~Ai~l~~ 705 (754)
.|+.+|+...|+|+++..
T Consensus 299 ahl~~a~~~~eea~r~~~ 316 (384)
T cd09248 299 AHLKRAILGQEEALRLHA 316 (384)
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 577889999999988765
No 448
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=29.74 E-value=8.2e+02 Score=27.28 Aligned_cols=175 Identities=12% Similarity=0.047 Sum_probs=101.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc----C--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-Cccccccchhh
Q 004426 519 KYRAVAKMEEGQIRAAISEIDRIIVF----K--LS-VDCLELRAWLFIAADDYESALRDTLALLALES-NYMMFHGRVSG 590 (754)
Q Consensus 519 ~~rg~~l~~lg~~~eAl~~~~rAl~l----~--p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P-~~~~~~~~~~~ 590 (754)
..+..+|.+.++|.+|++-.+..+.= + +. .+.+..-.-+|..+.+...|.+.+..|-+..- -|-+
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp------- 204 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP------- 204 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC-------
Confidence 46788899999999999988777642 1 11 22233344678888899999988888876432 1211
Q ss_pred hHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCC---ChhHHH---hHHHHHHHcCCHHH--HHH
Q 004426 591 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPG---KSFLRF---RQSLLLLRLNCQKA--AMR 661 (754)
Q Consensus 591 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~---~~~~~~---~~g~~L~~lg~~ee--Al~ 661 (754)
-++++.++.+-.-.-.++ .|++ |-+.|..|++---. ++.+.. .+=++-.++|.+++ ++-
T Consensus 205 PqlQa~lDLqSGIlha~e------------kDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~ll 272 (411)
T KOG1463|consen 205 PQLQATLDLQSGILHAAE------------KDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALL 272 (411)
T ss_pred HHHHHHHHHhccceeecc------------cccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 122222222222222221 3333 44455555443211 122222 22234456777774 444
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCChHHHHH
Q 004426 662 CLRLARNHSSSEHERLVYEGWILY--DTGHREEALSRAEKSISIERTFEAFFL 712 (754)
Q Consensus 662 ~~~~Al~l~P~~~ea~~~~G~~ly--~~G~~eeAl~~~e~Ai~l~~~~~a~~~ 712 (754)
....+++.+..+-+|+-..+.+.- .+.+|+.|++.|+.-+.-+|=...-+.
T Consensus 273 s~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~ 325 (411)
T KOG1463|consen 273 SAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQ 325 (411)
T ss_pred hhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHH
Confidence 555677777666666655554433 357899999999999998886665554
No 449
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=29.43 E-value=1e+02 Score=21.11 Aligned_cols=29 Identities=21% Similarity=0.095 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHc----CCHHHHHHHHHHHHhc
Q 004426 675 ERLVYEGWILYDT----GHREEALSRAEKSISI 703 (754)
Q Consensus 675 ea~~~~G~~ly~~----G~~eeAl~~~e~Ai~l 703 (754)
++.+++|.+++.- .+.++|+..|++|...
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 5667777776542 2778888888877654
No 450
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=28.38 E-value=3.1e+02 Score=32.35 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=58.6
Q ss_pred hHHHHHHHHHcC-----CCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 625 SLAVINQMLIND-----PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 699 (754)
Q Consensus 625 al~~~~~aL~l~-----P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~ 699 (754)
.+..|++||... -.+..-|..+|-.+.|.+++.+|++..-.|-.. .+..-| ..|=.+.|.+
T Consensus 298 ~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~V----------i~~YnY----~reDeEiYKE 363 (618)
T PF05053_consen 298 PLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADV----------IRKYNY----SREDEEIYKE 363 (618)
T ss_dssp HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----------HTTSB------GGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHH----------HHHccc----CccHHHHHHH
Confidence 355566666542 344555777888899999999999887666322 111112 2334467888
Q ss_pred HHhcCCChHHHHHHHHHhhcc-------------------CCCCCchhHHHHH
Q 004426 700 SISIERTFEAFFLKAYILADT-------------------NLDPESSTYVIQL 733 (754)
Q Consensus 700 Ai~l~~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 733 (754)
-++|.-...-.-+|.-+-..+ --||+|-.++++.
T Consensus 364 fleIAneLiP~~lk~~~~~~~~~~e~~~e~~~~~~~~~~il~Dpecfa~lLrF 416 (618)
T PF05053_consen 364 FLEIANELIPNVLKSESSGHSARSERHREDSPITYQAGSILRDPECFANLLRF 416 (618)
T ss_dssp HHHHHHTHHHHHHHHHHCHHHT----------------GGGG-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCccccccccccccccchhhhccCHHHHHHHHHH
Confidence 888888888888887765533 2378888887664
No 451
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=28.30 E-value=71 Score=27.38 Aligned_cols=27 Identities=11% Similarity=-0.135 Sum_probs=16.5
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 643 RFRQSLLLLRLNCQKAAMRCLRLARNH 669 (754)
Q Consensus 643 ~~~~g~~L~~lg~~eeAl~~~~~Al~l 669 (754)
+..+|.-+...|++++|+..|+.|++.
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344555556667777777777766643
No 452
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=27.73 E-value=1.4e+02 Score=20.31 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=15.9
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHH
Q 004426 503 DLNYASELDPTLSFPYKYRAVAKME 527 (754)
Q Consensus 503 dl~kAi~LdP~~~~ay~~rg~~l~~ 527 (754)
--.+++..+|.+..+|.+|--++..
T Consensus 5 ~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 5 FTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcccccHHHHHHHHHHH
Confidence 3456667777777777776655544
No 453
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=27.27 E-value=91 Score=26.96 Aligned_cols=33 Identities=24% Similarity=0.167 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 530 QIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 530 ~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
-|+.|.+.+++||..+ +.|+.++|+..|+++++
T Consensus 4 ~~~~A~~~I~kaL~~d--------------E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 4 YYKQAFEEISKALRAD--------------EWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHHhhhh--------------hcCCHHHHHHHHHHHHH
Confidence 3566666666666433 23566666666666655
No 454
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=27.01 E-value=1.5e+02 Score=28.45 Aligned_cols=55 Identities=15% Similarity=-0.008 Sum_probs=37.5
Q ss_pred CChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHH
Q 004426 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREE 692 (754)
Q Consensus 638 ~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~ee 692 (754)
+-++.-..++......|++.-|....+.++..+|+|.++..-+..+|-.+|.-.+
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 3345555666667778888888888888888888888888888877777665443
No 455
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=26.94 E-value=7.7e+02 Score=26.03 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=40.2
Q ss_pred CChhHHHhHHHHHHHcCCHHHHHHHHH----------------HHHhcCCCchhHHHHHHHHHHH-cCCHHHHHHHHHH
Q 004426 638 GKSFLRFRQSLLLLRLNCQKAAMRCLR----------------LARNHSSSEHERLVYEGWILYD-TGHREEALSRAEK 699 (754)
Q Consensus 638 ~~~~~~~~~g~~L~~lg~~eeAl~~~~----------------~Al~l~P~~~ea~~~~G~~ly~-~G~~eeAl~~~e~ 699 (754)
+++++|...|..+.+-|.+.+|...+- -..+-.|.+.+.+..|+.+-|- +|+..-|...++.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 677888888888888777777765442 2235668888888888887554 4888777765443
No 456
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=26.73 E-value=1.1e+02 Score=21.48 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=17.7
Q ss_pred hhHHHHHH--HHHHHcC-----CHHHHHHHHHHHHhc
Q 004426 674 HERLVYEG--WILYDTG-----HREEALSRAEKSISI 703 (754)
Q Consensus 674 ~ea~~~~G--~~ly~~G-----~~eeAl~~~e~Ai~l 703 (754)
++|.+++| .+++.-. +.++|+..|++|-+.
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 35677777 3333322 367777777777653
No 457
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=26.68 E-value=7.5e+02 Score=34.33 Aligned_cols=70 Identities=17% Similarity=0.079 Sum_probs=60.0
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Q 004426 510 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALE-SN 580 (754)
Q Consensus 510 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~-P~ 580 (754)
++-..+..|...|-+-...|+++-|-..+-+|.+.. -+..+..||-.+-..||-..|+..++..++++ |+
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 355568899999999999999999999999999766 35556779999999999999999999999766 55
No 458
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=26.08 E-value=97 Score=26.52 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=14.3
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHH
Q 004426 643 RFRQSLLLLRLNCQKAAMRCLRLAR 667 (754)
Q Consensus 643 ~~~~g~~L~~lg~~eeAl~~~~~Al 667 (754)
+..+|.-....|++++|+..|..|+
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444455556666666666666554
No 459
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.03 E-value=1.4e+02 Score=32.06 Aligned_cols=75 Identities=19% Similarity=0.148 Sum_probs=48.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHH-------HHHHcCCHHHHHHHHHHHHhc-------CCChH-HHHHHHHHh
Q 004426 653 LNCQKAAMRCLRLARNHSSSEHERLVYEGW-------ILYDTGHREEALSRAEKSISI-------ERTFE-AFFLKAYIL 717 (754)
Q Consensus 653 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~-------~ly~~G~~eeAl~~~e~Ai~l-------~~~~~-a~~~~~~~~ 717 (754)
+..-+.-...|.+|+.+.+.-+.-+ -.|. .....|+|++|-..|=+|..- .|..- -|...|--|
T Consensus 204 qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANML 282 (440)
T KOG1464|consen 204 QKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANML 282 (440)
T ss_pred hcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHH
Confidence 4444555667888888876544322 2333 356778899888888777653 12222 567777778
Q ss_pred hccCCCCCchh
Q 004426 718 ADTNLDPESST 728 (754)
Q Consensus 718 ~~~~~~~~~~~ 728 (754)
..|.++|-.|.
T Consensus 283 mkS~iNPFDsQ 293 (440)
T KOG1464|consen 283 MKSGINPFDSQ 293 (440)
T ss_pred HHcCCCCCccc
Confidence 88888886653
No 460
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=25.82 E-value=1.2e+02 Score=33.75 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=38.1
Q ss_pred hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHH
Q 004426 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLR 664 (754)
Q Consensus 625 al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~ 664 (754)
|+.+++.++..+|.+..+...+-.++..+|....|+..|+
T Consensus 202 Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 202 AIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6889999999999999999999999999999999999985
No 461
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=25.42 E-value=88 Score=27.25 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=24.0
Q ss_pred HHHHHHhchhChhhHHHHHHHHHHhhcC
Q 004426 292 LELLSFANRFCCEEMKSACDAHLASLVG 319 (754)
Q Consensus 292 lelL~aA~~f~l~~Lk~~Ce~~L~~~i~ 319 (754)
++++.+|..|++..|...|.+|+..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~ 29 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFN 29 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999987553
No 462
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=25.12 E-value=5e+02 Score=29.90 Aligned_cols=112 Identities=22% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHH
Q 004426 549 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV 628 (754)
Q Consensus 549 ~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~ 628 (754)
+.-..+.......||++++++.. ++-++-|.-..-.|+..+..+.. .-.
T Consensus 262 d~~~~~fk~av~~~d~~~v~~~i-~~~~ll~~i~~~~~~~i~~fL~~------------------------------~G~ 310 (443)
T PF04053_consen 262 DLSELEFKTAVLRGDFEEVLRMI-AASNLLPNIPKDQGQSIARFLEK------------------------------KGY 310 (443)
T ss_dssp -HHHHHHHHHHHTT-HHH------HHHHTGGG--HHHHHHHHHHHHH------------------------------TT-
T ss_pred CHHHHHHHHHHHcCChhhhhhhh-hhhhhcccCChhHHHHHHHHHHH------------------------------CCC
Q ss_pred HHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 629 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 700 (754)
Q Consensus 629 ~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~A 700 (754)
.+.||.. ..+++.+|.+| +.+|+.+.|.+. ....++...+..+|..-..+|+++-|...|.++
T Consensus 311 ~e~AL~~-~~D~~~rFeLA---l~lg~L~~A~~~-----a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 311 PELALQF-VTDPDHRFELA---LQLGNLDIALEI-----AKELDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHH-SS-HHHHHHHH---HHCT-HHHHHHH-----CCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHhh-cCChHHHhHHH---HhcCCHHHHHHH-----HHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
No 463
>PHA03098 kelch-like protein; Provisional
Probab=24.90 E-value=76 Score=37.02 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=31.0
Q ss_pred CChhHHHHHHHHhchhChhhHHHHHHHHHHhhcC
Q 004426 286 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 319 (754)
Q Consensus 286 i~~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~ 319 (754)
++.+|+++++.+|..|.+..|++.|.+|+.++..
T Consensus 105 l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~ 138 (534)
T PHA03098 105 IDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIE 138 (534)
T ss_pred CCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999986553
No 464
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=24.72 E-value=61 Score=36.25 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=41.7
Q ss_pred eEEecCCCCCHHHHHHHHHHhhcCCCCC------------CChhHHHHHHHHhchhChhhHHHHHHHHHHhh
Q 004426 258 TIDFSHDGVSVEGLRAVEVYTRTSRVDL------------FCPGIVLELLSFANRFCCEEMKSACDAHLASL 317 (754)
Q Consensus 258 ~I~l~~~~vs~~~f~~lL~ylYTg~l~~------------i~~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~ 317 (754)
.|.+ .++..+++-.+|.-...-.+.. +..+||+-++.+|..|+++.|...|..|+-.+
T Consensus 107 ~~~l--~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrn 176 (620)
T KOG4350|consen 107 KIDL--AGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRN 176 (620)
T ss_pred ceec--ccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcC
Confidence 5777 6777776655554433222211 45578889999999999999999999998653
No 465
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=24.64 E-value=2e+02 Score=24.60 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=23.8
Q ss_pred HHHHHHhchhChhhHHHHHHHHHHhhcC
Q 004426 292 LELLSFANRFCCEEMKSACDAHLASLVG 319 (754)
Q Consensus 292 lelL~aA~~f~l~~Lk~~Ce~~L~~~i~ 319 (754)
++++.+|+.|+++.|...|..++.++..
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~nf~ 29 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKNFL 29 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999876543
No 466
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=24.58 E-value=1.1e+02 Score=34.49 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=34.4
Q ss_pred CChhHHHHHHHHhchhChhhHHHHHHHHHHhhcCCHhhHH
Q 004426 286 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDAL 325 (754)
Q Consensus 286 i~~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~~~n~l 325 (754)
+++.++...+.++.+|+++.++..|.++|..++.+..|.-
T Consensus 170 lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q 209 (488)
T KOG4682|consen 170 LSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQ 209 (488)
T ss_pred cChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHH
Confidence 7899999999999999999999999999987665444443
No 467
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.18 E-value=1.8e+02 Score=31.19 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCchh----HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 653 LNCQKAAMRCLRLARNHSSSEHE----RLVYEGWILYDTGHREEALSRAEKSIS 702 (754)
Q Consensus 653 lg~~eeAl~~~~~Al~l~P~~~e----a~~~~G~~ly~~G~~eeAl~~~e~Ai~ 702 (754)
-..+++|+.+|++.+++.|.-++ |+-..=-+.+.+|+|+|-+..|.+-+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 35888999999999999888765 455555678888999999999888775
No 468
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=24.07 E-value=7.8e+02 Score=25.12 Aligned_cols=171 Identities=13% Similarity=0.005 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHHHHHHH--HH---HHcCCHHHHHHHHHHHHhcCCCccccccchh
Q 004426 516 FPYKYRAVAKME-EGQIRAAISEIDRIIVFKLSVDCLELRAW--LF---IAADDYESALRDTLALLALESNYMMFHGRVS 589 (754)
Q Consensus 516 ~ay~~rg~~l~~-lg~~~eAl~~~~rAl~l~p~~~~~~~ra~--~~---~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~ 589 (754)
++-..+|.-+-. ++++++|...|..--.-+..+..-+-.|+ +. -..++...|++.|..+-.++- ..
T Consensus 35 e~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~--------~~ 106 (248)
T KOG4014|consen 35 ESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANI--------PQ 106 (248)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCC--------HH
Confidence 334444444333 35667776666555533333443333332 11 224567888888888877553 34
Q ss_pred hhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (754)
Q Consensus 590 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 668 (754)
+...++++...-+...+++ -|.+ ++..+.|+..+ +++.+.|+++.-+.. |..+ +.-
T Consensus 107 aC~~~gLl~~~g~~~r~~d------------pd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~-g~~k--------~~t 163 (248)
T KOG4014|consen 107 ACRYLGLLHWNGEKDRKAD------------PDSEKAERYMTRACDL--EDGEACFLLSTMYMG-GKEK--------FKT 163 (248)
T ss_pred HHhhhhhhhccCcCCccCC------------CCcHHHHHHHHHhccC--CCchHHHHHHHHHhc-cchh--------hcc
Confidence 6666677766666666664 2333 77889998876 566778877754432 2221 222
Q ss_pred cCCCc--hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhcc
Q 004426 669 HSSSE--HERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILADT 720 (754)
Q Consensus 669 l~P~~--~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~~ 720 (754)
..|-. +--...+|.+ ..+-+.|++..-+|.++.--.. |=.-+-|.|+|-
T Consensus 164 ~ap~~g~p~~~~~~~~~---~kDMdka~qfa~kACel~~~~aCAN~SrMyklGDG 215 (248)
T KOG4014|consen 164 NAPGEGKPLDRAELGSL---SKDMDKALQFAIKACELDIPQACANVSRMYKLGDG 215 (248)
T ss_pred cCCCCCCCcchhhhhhh---hHhHHHHHHHHHHHHhcCChHHHhhHHHHHHccCC
Confidence 23421 1112223333 3556788888888888866666 777777777774
No 469
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.82 E-value=2.6e+02 Score=33.01 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=40.2
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHc-CCHHHHHHHHH-----HHHhcCCChH
Q 004426 645 RQSLLLLRLNCQKAAMRCLRLARNHSSS-EHERLVYEGWILYDT-GHREEALSRAE-----KSISIERTFE 708 (754)
Q Consensus 645 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~-~~ea~~~~G~~ly~~-G~~eeAl~~~e-----~Ai~l~~~~~ 708 (754)
+.=.-+.+-||+.-|.+.....+.++|. |+.+..++=-++.-. .+|+==+..++ +-+..=|+|.
T Consensus 347 r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~ 417 (665)
T KOG2422|consen 347 RYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG 417 (665)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch
Confidence 3334456699999999999999999999 877765554443222 22322222222 2355667775
No 470
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=23.78 E-value=1.5e+02 Score=19.37 Aligned_cols=22 Identities=14% Similarity=-0.073 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHhcCCCchhH
Q 004426 655 CQKAAMRCLRLARNHSSSEHER 676 (754)
Q Consensus 655 ~~eeAl~~~~~Al~l~P~~~ea 676 (754)
.++.|...|+++++..|.+.+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~ 23 (33)
T smart00386 2 DIERARKIYERALEKFPKSVEL 23 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHH
Confidence 4455556666666666555444
No 471
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=23.74 E-value=2.2e+02 Score=30.93 Aligned_cols=57 Identities=12% Similarity=-0.057 Sum_probs=49.7
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 699 (754)
Q Consensus 643 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~ 699 (754)
.+-.+..+..-|.+.+|+...++++.++|=+-.-..-+=.+|-..|+=-+|...|++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 344666778899999999999999999999998888888889999998888888876
No 472
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=23.70 E-value=9.4e+02 Score=25.90 Aligned_cols=129 Identities=10% Similarity=0.000 Sum_probs=0.0
Q ss_pred HHHHHhCCHHHHHHHHHHHHHccCC-------CHHHHHHhhhcCCh---hh---HHHHHHHHHhhCCCChHHHHHHHHHH
Q 004426 459 RAKYKVGQQYSAYKLINSIISEHKP-------TGWMYQERSLYNLG---RE---KIVDLNYASELDPTLSFPYKYRAVAK 525 (754)
Q Consensus 459 rv~~~~G~~~~A~~~~~~aI~~~~~-------~g~ay~~r~~y~~g---~e---Al~dl~kAi~LdP~~~~ay~~rg~~l 525 (754)
|.+...|++++=-..+++......+ .+.++...+.+... +. ....++..++-.|+...||..+|..+
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~ 87 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYW 87 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHH
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccc
Q 004426 526 MEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSW 604 (754)
Q Consensus 526 ~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~ 604 (754)
. ++|-.+.-. ...............-.+.|..++.+|++++|+- ..+......+....+..
T Consensus 88 ~------------~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~------~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 88 V------------HRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRP------VAAAIGMINISAYFGEP 149 (277)
T ss_pred H------------HHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCc------hHHHHHHHHHHhhcCCc
Q ss_pred c
Q 004426 605 S 605 (754)
Q Consensus 605 ~ 605 (754)
+
T Consensus 150 ~ 150 (277)
T PF13226_consen 150 D 150 (277)
T ss_pred h
No 473
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=23.69 E-value=1.2e+02 Score=33.19 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHH
Q 004426 677 LVYEGWILYDTGHREEALSRAEKSISIERTFE-AFF 711 (754)
Q Consensus 677 ~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~ 711 (754)
++-.|...-+.|..-+|+..|+.|+.|.|+.| +|+
T Consensus 22 l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 22 LYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 33334444455777777777777777777777 665
No 474
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=23.31 E-value=2.5e+02 Score=31.38 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=54.1
Q ss_pred EEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCC----CcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhHHHHHH
Q 004426 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVES----KRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELL 295 (754)
Q Consensus 220 V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es----~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~vlelL 295 (754)
+++.|.|+.|...|.-|- .|=.+++.+.-+|- ...+.-+ |-+|++|+.+|+|-.||++. .+....+.-+
T Consensus 42 lvlNvSGrRFeTWknTLe---ryPdTLLGSsEkeFFy~~dt~eYFF---DRDPdiFRhvLnFYRTGkLH-yPR~ECi~Ay 114 (632)
T KOG4390|consen 42 LVLNVSGRRFETWKNTLE---RYPDTLLGSSEKEFFYDEDTGEYFF---DRDPDIFRHVLNFYRTGKLH-YPRHECISAY 114 (632)
T ss_pred EEEeccccchhHHHhHHH---hCchhhhCCcchheeecCCcccccc---cCChHHHHHHHHHhhcCccc-CchHHHHHHh
Confidence 788899999999999883 34456665543321 1223334 67899999999999999998 4332222111
Q ss_pred --HHhchhChhhHHHHHH
Q 004426 296 --SFANRFCCEEMKSACD 311 (754)
Q Consensus 296 --~aA~~f~l~~Lk~~Ce 311 (754)
++|-+=.+++|..-|+
T Consensus 115 DeELaF~Gl~PeligDCC 132 (632)
T KOG4390|consen 115 DEELAFYGLVPELIGDCC 132 (632)
T ss_pred hhhhhHhcccHHHHhhhh
Confidence 2232333477777664
No 475
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=23.26 E-value=1.2e+03 Score=27.05 Aligned_cols=50 Identities=10% Similarity=0.059 Sum_probs=30.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 524 AKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLA 573 (754)
Q Consensus 524 ~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~ 573 (754)
-+..+|+|+++.-.-.=..+++|++.++...|.++...++|++|...+..
T Consensus 471 yLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 34455666666665555556666666666666666666666666655543
No 476
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=23.02 E-value=1.4e+02 Score=25.64 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=14.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 004426 519 KYRAVAKMEEGQIRAAISEIDRIIV 543 (754)
Q Consensus 519 ~~rg~~l~~lg~~~eAl~~~~rAl~ 543 (754)
..+|+-.-..|+|++|+..|..||+
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3344444456666666666666663
No 477
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=22.18 E-value=1.6e+02 Score=27.57 Aligned_cols=32 Identities=6% Similarity=-0.065 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHH
Q 004426 519 KYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC 550 (754)
Q Consensus 519 ~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~ 550 (754)
..+|..++..|++++|+..|-+||..-|+|..
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 45899999999999999999999999999753
No 478
>KOG3690 consensus Angiotensin I-converting enzymes - M2 family peptidases [Amino acid transport and metabolism]
Probab=21.87 E-value=87 Score=36.87 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=33.5
Q ss_pred cchhHHHHHHHhhcc---------ChhhH-HH-----------HHHHHHhhhcccchhHHHHH
Q 004426 105 KSMLFIEQYAYLCGL---------GDAKL-LR-----------RCLRSARQYAGDLHLKVVLS 146 (754)
Q Consensus 105 ~~~~~~~~~~~~r~l---------g~~~~-l~-----------~~l~~a~~~~~~~~~~~v~~ 146 (754)
+.--++.|||++|+| |||.+ || +.||.+.+-+...|=+-|+.
T Consensus 518 yf~s~vlqFQf~kalC~~agq~~pg~pr~pLh~CDi~~sk~aG~kL~~~M~lG~S~~W~evLE 580 (646)
T KOG3690|consen 518 YFLSTVLQFQFLKALCQAAGQYGPGDPRKPLHNCDIYDSKEAGEKLRTMMSLGSSRHWREVLE 580 (646)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCchhccccCCHHHHHHHHHHHHccCCccHHHHHH
Confidence 455688999999988 77765 44 68999999999999777773
No 479
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=21.68 E-value=1.6e+02 Score=25.12 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=36.5
Q ss_pred HHHHHhhcCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCchhhhhhc
Q 004426 311 DAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIF 364 (754)
Q Consensus 311 e~~L~~~i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~e~f~~Ll 364 (754)
.+|+ .++ .+..+.++..|...+...|.+.|.++|...+.. ...+++++++
T Consensus 6 ~~F~--~~~-~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~g-ks~eeir~~f 55 (78)
T PF01466_consen 6 QEFL--DVD-NDELFDLLNAANYLDIKGLLDLCCKYIANMIKG-KSPEEIRKYF 55 (78)
T ss_dssp HHHT---S--HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHH--HcC-HHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcC-CCHHHHHHHc
Confidence 3455 457 789999999999999999999999999888775 2345555543
No 480
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.59 E-value=4.8e+02 Score=29.72 Aligned_cols=28 Identities=29% Similarity=0.114 Sum_probs=18.8
Q ss_pred cccchhHHHHHHHhhccChhhHHHHHHH
Q 004426 103 SDKSMLFIEQYAYLCGLGDAKLLRRCLR 130 (754)
Q Consensus 103 ~~~~~~~~~~~~~~r~lg~~~~l~~~l~ 130 (754)
-+|.-.+.|-..|+|+|-+...+|+-|.
T Consensus 41 i~kg~~tke~r~I~R~lr~l~~~r~kln 68 (493)
T KOG2581|consen 41 IDKGVYTKEPRFILRALRLLPSTRRKLN 68 (493)
T ss_pred HhccccccchHHHHHHHHhhhhhHhhhh
Confidence 3455566777777777777777766655
No 481
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=21.40 E-value=1.5e+02 Score=25.41 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=12.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 519 KYRAVAKMEEGQIRAAISEIDRII 542 (754)
Q Consensus 519 ~~rg~~l~~lg~~~eAl~~~~rAl 542 (754)
..+|+-.-..|++++|+..|..+|
T Consensus 10 ~~~Ave~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 10 LKRAVELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444444555555555555544
No 482
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=21.34 E-value=1.4e+02 Score=25.07 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=18.2
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhh
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADA 448 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~ 448 (754)
+..+...|+-.-..|+|++|+.+|..|++.
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344445555556667777777777666553
No 483
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=21.15 E-value=9.4e+02 Score=25.00 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=22.9
Q ss_pred cCCCChhH---HHhHHHHH-HHcCCHHHHHHHHHHHHhcC
Q 004426 635 NDPGKSFL---RFRQSLLL-LRLNCQKAAMRCLRLARNHS 670 (754)
Q Consensus 635 l~P~~~~~---~~~~g~~L-~~lg~~eeAl~~~~~Al~l~ 670 (754)
+.|.+|.- ..|.+..+ .-+|.+++|+...++|+.-.
T Consensus 160 L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 160 LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 45666542 33444444 44999999999999887543
No 484
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=20.86 E-value=1.5e+03 Score=27.06 Aligned_cols=79 Identities=16% Similarity=0.028 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHH-----HHHHcCCHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAW-----LFIAADDYESALRDT 571 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~-----~~~~lgd~~~Al~d~ 571 (754)
..|...++.+.++||.+...-..+..+|..+.....-+..|-.-+.++|+ .+....|-. ....-...++++...
T Consensus 248 ~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~ 327 (557)
T COG0497 248 GRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYL 327 (557)
T ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45666777788889988888888888888877777777777777777885 443333332 222233355555555
Q ss_pred HHHHh
Q 004426 572 LALLA 576 (754)
Q Consensus 572 ~~al~ 576 (754)
+++.+
T Consensus 328 ~~~~~ 332 (557)
T COG0497 328 DKIKE 332 (557)
T ss_pred HHHHH
Confidence 55443
No 485
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=20.61 E-value=2.3e+02 Score=23.13 Aligned_cols=37 Identities=30% Similarity=0.258 Sum_probs=15.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 004426 680 EGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 716 (754)
Q Consensus 680 ~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~ 716 (754)
.|..++..|+|=||-...|......|..+.-|++|+.
T Consensus 5 ~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglI 41 (62)
T PF03745_consen 5 EGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLI 41 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHH
Confidence 3444444444444444444444433333444444443
No 486
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=20.17 E-value=1.5e+03 Score=26.93 Aligned_cols=235 Identities=18% Similarity=0.166 Sum_probs=139.2
Q ss_pred CHHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCHH
Q 004426 484 TGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQ--------------IRAAISEIDRIIVFKLSVD 549 (754)
Q Consensus 484 ~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~--------------~~eAl~~~~rAl~l~p~~~ 549 (754)
.|.++.+|-.| .|++++-.=+-.++.|+.-+.-+..-++ -++|...|.++|.--..-
T Consensus 256 ~~~~~~~Rv~y--------ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~- 326 (656)
T KOG1914|consen 256 DGTMLTRRVMY--------AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE- 326 (656)
T ss_pred cccHHHHHHHH--------HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH-
Confidence 45555555443 4556666556666666665555555444 678888888888532211
Q ss_pred HHHHHHHHHHHcCCHHHHHHH----------HHHHHh---cCCCccc-----cccchhh----hHHHHHHhhhhccc-c-
Q 004426 550 CLELRAWLFIAADDYESALRD----------TLALLA---LESNYMM-----FHGRVSG----DHLVKLLNHHVRSW-S- 605 (754)
Q Consensus 550 ~~~~ra~~~~~lgd~~~Al~d----------~~~al~---l~P~~~~-----~~~~~~~----~~~~~~l~~~~~~~-~- 605 (754)
-..++...-+++++..+ +++++. .+|+... |.-|..+ ...-+..+.....- .
T Consensus 327 ----~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV 402 (656)
T KOG1914|consen 327 ----NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV 402 (656)
T ss_pred ----HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence 11344445555555544 555554 4555321 3333322 22222222222211 1
Q ss_pred -chhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhc--CCCchhHHHHHH
Q 004426 606 -PADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--SSSEHERLVYEG 681 (754)
Q Consensus 606 -~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l--~P~~~ea~~~~G 681 (754)
-|.++|.-|- ..|.. |..+|+-.|..-|+.+.+-.---.-|..+|+..-|...|++++.- .|+-.-..| --
T Consensus 403 fVa~A~mEy~c----skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw-~r 477 (656)
T KOG1914|consen 403 FVAAALMEYYC----SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIW-DR 477 (656)
T ss_pred hHHHHHHHHHh----cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHH-HH
Confidence 1222222222 25555 777999999999999999988899999999999999999999987 555443333 33
Q ss_pred HHHHHc--CCHHHHHHHHHHHHhc------CCChH-HHHHHHHHhhccCCCCCchhHHHHHHHH
Q 004426 682 WILYDT--GHREEALSRAEKSISI------ERTFE-AFFLKAYILADTNLDPESSTYVIQLLEE 736 (754)
Q Consensus 682 ~~ly~~--G~~eeAl~~~e~Ai~l------~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (754)
|+-|.. |+..-.++.=.|=..- .|-.+ |-|.--|-+.|...=...+.+-+..-|+
T Consensus 478 ~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l~~~~~ 541 (656)
T KOG1914|consen 478 MLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFLGYKEE 541 (656)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhhhHHHh
Confidence 444443 8877776554443222 23333 8888888888887766666666666555
No 487
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=20.06 E-value=2.9e+02 Score=24.96 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHH
Q 004426 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYI 716 (754)
Q Consensus 674 ~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~ 716 (754)
+......|++-+..||+++|.+...++-+..+.-. +|.+-|.|
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~A 102 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARA 102 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 56678899999999999999999999977755555 77776654
Done!