Query 004426
Match_columns 754
No_of_seqs 506 out of 2147
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 00:52:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004426hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 3E-30 1E-34 281.1 31.9 319 398-719 49-385 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-28 4.9E-33 267.8 39.6 330 398-740 15-368 (388)
3 3hve_A Gigaxonin; ubiquitin, c 100.0 2.5E-30 8.5E-35 270.5 14.1 192 211-412 25-226 (256)
4 3i3n_A Kelch-like protein 11; 100.0 5.5E-30 1.9E-34 271.4 13.6 193 213-415 28-237 (279)
5 3ieg_A DNAJ homolog subfamily 100.0 1.3E-25 4.5E-30 237.9 37.8 311 385-712 7-345 (359)
6 2y4t_A DNAJ homolog subfamily 100.0 7.5E-26 2.6E-30 249.9 35.5 315 384-715 29-371 (450)
7 3hym_B Cell division cycle pro 100.0 5.7E-26 2E-30 238.7 32.8 276 421-720 24-317 (330)
8 2h6f_A Protein farnesyltransfe 99.9 1.5E-26 5.2E-31 255.8 23.2 252 419-720 97-366 (382)
9 3ieg_A DNAJ homolog subfamily 99.9 1.8E-24 6E-29 229.3 37.0 294 419-740 3-335 (359)
10 3htm_A Speckle-type POZ protei 99.9 4.9E-27 1.7E-31 230.2 13.7 145 211-359 28-172 (172)
11 2y4t_A DNAJ homolog subfamily 99.9 2.4E-24 8.1E-29 237.9 34.8 295 418-740 25-358 (450)
12 2xpi_A Anaphase-promoting comp 99.9 2.5E-24 8.6E-29 246.9 34.7 295 398-720 288-597 (597)
13 4g1t_A Interferon-induced prot 99.9 2.4E-24 8.2E-29 240.0 30.5 319 383-708 53-406 (472)
14 1fch_A Peroxisomal targeting s 99.9 1.3E-24 4.4E-29 233.1 24.3 271 428-721 34-344 (368)
15 2gw1_A Mitochondrial precursor 99.9 4.4E-24 1.5E-28 238.8 29.4 325 386-740 11-444 (514)
16 4eqf_A PEX5-related protein; a 99.9 1.3E-24 4.6E-29 234.1 23.0 235 420-706 66-313 (365)
17 3fp2_A TPR repeat-containing p 99.9 1.2E-23 4E-28 237.5 31.5 277 434-735 217-529 (537)
18 2h6f_A Protein farnesyltransfe 99.9 1E-24 3.5E-29 241.2 22.3 215 498-737 114-344 (382)
19 3fp2_A TPR repeat-containing p 99.9 1.5E-23 5.1E-28 236.6 32.0 306 384-718 28-429 (537)
20 2xpi_A Anaphase-promoting comp 99.9 5.4E-23 1.8E-27 235.8 37.2 290 422-739 275-578 (597)
21 2gw1_A Mitochondrial precursor 99.9 1.8E-23 6.3E-28 233.8 31.1 273 419-716 186-492 (514)
22 1fch_A Peroxisomal targeting s 99.9 4.1E-24 1.4E-28 229.2 24.3 260 419-703 64-359 (368)
23 3hqi_A Speckle-type POZ protei 99.9 3.7E-25 1.3E-29 237.9 14.1 145 211-359 168-312 (312)
24 2pl2_A Hypothetical conserved 99.9 4.6E-24 1.6E-28 215.9 20.8 179 498-701 22-212 (217)
25 4g1t_A Interferon-induced prot 99.9 6.7E-23 2.3E-27 228.3 29.9 266 419-708 51-368 (472)
26 3cv0_A Peroxisome targeting si 99.9 9.4E-24 3.2E-28 221.5 21.7 262 420-705 22-317 (327)
27 3uq3_A Heat shock protein STI1 99.9 5.3E-23 1.8E-27 208.2 25.2 226 418-704 4-237 (258)
28 2pl2_A Hypothetical conserved 99.9 2.9E-23 9.9E-28 210.0 22.7 195 512-721 2-199 (217)
29 3hym_B Cell division cycle pro 99.9 1.2E-22 4.1E-27 213.3 28.3 275 397-692 37-323 (330)
30 3vtx_A MAMA; tetratricopeptide 99.9 7E-23 2.4E-27 199.4 20.5 174 513-710 3-177 (184)
31 3cv0_A Peroxisome targeting si 99.9 5.3E-22 1.8E-26 208.1 25.6 246 452-721 22-300 (327)
32 4eqf_A PEX5-related protein; a 99.9 3.4E-22 1.2E-26 215.3 24.4 223 498-739 82-309 (365)
33 3mkr_A Coatomer subunit epsilo 99.9 4.2E-22 1.5E-26 211.5 24.5 249 429-708 9-269 (291)
34 3u4t_A TPR repeat-containing p 99.9 2.8E-22 9.5E-27 205.9 22.3 235 421-708 5-255 (272)
35 4eoz_A Speckle-type POZ protei 99.9 2.6E-24 9E-29 204.8 5.9 127 211-341 19-145 (145)
36 4gyw_A UDP-N-acetylglucosamine 99.9 3.9E-22 1.3E-26 237.3 17.5 174 510-707 4-178 (723)
37 4a1s_A PINS, partner of inscut 99.9 1.6E-21 5.4E-26 212.9 20.1 291 417-725 46-394 (411)
38 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.3E-21 1.8E-25 196.0 19.7 246 424-697 10-269 (275)
39 2vkp_A BTB/POZ domain-containi 99.9 7.2E-22 2.5E-26 178.9 11.6 102 213-318 4-109 (109)
40 1ouv_A Conserved hypothetical 99.9 5.3E-20 1.8E-24 190.6 27.3 234 418-714 5-262 (273)
41 3uq3_A Heat shock protein STI1 99.9 3E-20 1E-24 187.8 24.0 205 498-739 22-235 (258)
42 3sf4_A G-protein-signaling mod 99.9 3.1E-21 1.1E-25 208.6 17.6 285 419-721 9-361 (406)
43 2q7f_A YRRB protein; TPR, prot 99.9 1.2E-20 4E-25 189.8 20.4 204 485-715 30-235 (243)
44 4abn_A Tetratricopeptide repea 99.9 7.8E-21 2.7E-25 215.4 21.3 210 467-700 84-318 (474)
45 3ro2_A PINS homolog, G-protein 99.9 8.5E-21 2.9E-25 198.0 18.3 271 419-707 5-336 (338)
46 2if5_A Zinc finger and BTB dom 99.8 1.7E-21 5.8E-26 179.8 10.5 101 211-314 19-119 (120)
47 4abn_A Tetratricopeptide repea 99.8 2E-20 6.7E-25 212.1 21.1 197 498-719 85-304 (474)
48 4i17_A Hypothetical protein; T 99.8 7.4E-20 2.5E-24 184.4 20.9 177 512-712 4-219 (228)
49 2q7f_A YRRB protein; TPR, prot 99.8 7.6E-20 2.6E-24 183.8 20.5 218 418-689 22-242 (243)
50 2ond_A Cleavage stimulation fa 99.8 4E-19 1.4E-23 188.9 25.9 231 436-706 33-273 (308)
51 2ho1_A Type 4 fimbrial biogene 99.8 5.4E-19 1.8E-23 179.5 25.4 189 498-710 54-245 (252)
52 3mkr_A Coatomer subunit epsilo 99.8 4.1E-19 1.4E-23 188.5 25.3 264 398-697 15-288 (291)
53 3u4t_A TPR repeat-containing p 99.8 1E-19 3.6E-24 186.6 20.1 214 498-739 20-249 (272)
54 3vtx_A MAMA; tetratricopeptide 99.8 1.6E-19 5.3E-24 175.6 19.2 159 498-682 22-181 (184)
55 1r29_A B-cell lymphoma 6 prote 99.8 1.3E-20 4.5E-25 175.7 11.0 103 211-316 23-125 (127)
56 2z8h_A Transcription regulator 99.8 4E-21 1.4E-25 182.0 7.6 107 211-323 30-137 (138)
57 1xnf_A Lipoprotein NLPI; TPR, 99.8 3.5E-19 1.2E-23 182.4 21.9 221 461-707 15-248 (275)
58 2ppi_A Gigaxonin; BTB domain, 99.8 8E-21 2.7E-25 181.4 8.9 102 211-315 41-144 (144)
59 3b84_A Zinc finger and BTB dom 99.8 6.9E-21 2.3E-25 175.8 7.7 98 212-316 19-116 (119)
60 3sf4_A G-protein-signaling mod 99.8 1.4E-19 4.8E-24 195.6 18.1 302 385-708 13-382 (406)
61 1buo_A POZ domain, protein (pr 99.8 3E-20 1E-24 171.9 10.6 100 211-318 22-121 (121)
62 3dss_A Geranylgeranyl transfer 99.8 7.8E-19 2.7E-23 189.7 22.8 223 498-748 47-310 (331)
63 2vpk_A Myoneurin; transcriptio 99.8 2.6E-20 8.9E-25 170.9 9.2 99 212-315 17-115 (116)
64 2vq2_A PILW, putative fimbrial 99.8 3.1E-18 1.1E-22 169.3 24.7 188 498-709 25-217 (225)
65 2yy9_A Zinc finger and BTB dom 99.8 1.5E-20 5.1E-25 177.5 7.0 101 212-319 20-120 (135)
66 2pzi_A Probable serine/threoni 99.8 1.4E-19 4.7E-24 214.5 16.7 197 480-701 389-596 (681)
67 4gyw_A UDP-N-acetylglucosamine 99.8 2E-19 7E-24 213.9 17.8 154 498-675 26-180 (723)
68 2xm6_A Protein corresponding t 99.8 6.1E-17 2.1E-21 183.1 36.8 318 398-738 59-430 (490)
69 2xm6_A Protein corresponding t 99.8 7.7E-17 2.6E-21 182.3 37.0 283 420-719 112-448 (490)
70 2pzi_A Probable serine/threoni 99.8 2.2E-19 7.4E-24 212.8 16.4 184 508-719 387-580 (681)
71 2ond_A Cleavage stimulation fa 99.8 2.8E-18 9.4E-23 182.4 22.8 220 498-743 33-274 (308)
72 2ho1_A Type 4 fimbrial biogene 99.8 8.7E-18 3E-22 170.5 24.9 209 418-680 36-249 (252)
73 4a1s_A PINS, partner of inscut 99.8 5E-19 1.7E-23 193.1 16.3 265 453-739 50-371 (411)
74 3urz_A Uncharacterized protein 99.8 9E-19 3.1E-23 175.7 16.6 172 514-710 3-193 (208)
75 1qqe_A Vesicular transport pro 99.8 6.5E-19 2.2E-23 186.1 16.3 226 434-714 32-280 (292)
76 2vq2_A PILW, putative fimbrial 99.8 5.1E-18 1.7E-22 167.7 21.7 207 509-743 2-215 (225)
77 3dra_A Protein farnesyltransfe 99.8 5.1E-18 1.7E-22 181.9 22.7 229 468-714 50-300 (306)
78 2ihc_A Transcription regulator 99.8 1.4E-20 4.9E-25 174.9 2.5 101 211-315 23-123 (124)
79 3ohu_A Transcription regulator 99.8 1.6E-20 5.5E-25 174.6 2.5 98 212-314 27-125 (125)
80 2q81_A MIZ-1 protein; BTB/POZ 99.8 7.2E-20 2.5E-24 168.9 6.2 95 213-315 23-117 (119)
81 4i17_A Hypothetical protein; T 99.8 3.5E-18 1.2E-22 172.1 17.9 170 498-685 24-225 (228)
82 3ga1_A Nucleus accumbens-assoc 99.8 6.2E-20 2.1E-24 171.7 4.5 99 213-318 29-128 (129)
83 3dra_A Protein farnesyltransfe 99.8 1.6E-17 5.5E-22 177.9 23.2 200 498-719 50-270 (306)
84 3qky_A Outer membrane assembly 99.8 1.1E-17 3.7E-22 172.5 21.0 188 507-708 7-229 (261)
85 4gco_A Protein STI-1; structur 99.8 2.4E-18 8.3E-23 159.4 13.7 121 506-684 4-125 (126)
86 3ro2_A PINS homolog, G-protein 99.8 2.8E-18 9.6E-23 178.8 15.8 266 453-740 7-332 (338)
87 1ouv_A Conserved hypothetical 99.8 2.2E-16 7.4E-21 163.4 29.2 208 498-739 23-250 (273)
88 2r5s_A Uncharacterized protein 99.8 3.1E-18 1E-22 166.7 13.7 168 511-702 2-172 (176)
89 4ga2_A E3 SUMO-protein ligase 99.8 1E-18 3.5E-23 166.5 9.9 140 521-718 3-145 (150)
90 1dce_A Protein (RAB geranylger 99.8 4.1E-19 1.4E-23 206.0 7.8 186 498-707 46-271 (567)
91 3nf1_A KLC 1, kinesin light ch 99.8 2.1E-18 7.3E-23 179.2 12.0 247 413-706 21-310 (311)
92 4ga2_A E3 SUMO-protein ligase 99.8 2.5E-18 8.7E-23 163.8 11.3 146 483-689 2-149 (150)
93 3ulq_A Response regulator aspa 99.8 3.4E-17 1.2E-21 178.4 21.3 246 419-706 103-371 (383)
94 2ooe_A Cleavage stimulation fa 99.7 2.8E-16 9.6E-21 179.4 29.7 212 499-733 256-488 (530)
95 3qou_A Protein YBBN; thioredox 99.7 2.4E-17 8.1E-22 174.1 19.2 170 509-702 111-283 (287)
96 3as5_A MAMA; tetratricopeptide 99.7 2.4E-17 8.1E-22 157.3 17.3 170 515-708 8-178 (186)
97 3m5b_A Zinc finger and BTB dom 99.7 1E-18 3.4E-23 161.5 7.3 91 214-316 27-117 (119)
98 3e4b_A ALGK; tetratricopeptide 99.7 1E-16 3.4E-21 180.5 24.1 302 398-738 19-349 (452)
99 1qqe_A Vesicular transport pro 99.7 2.8E-17 9.5E-22 173.6 17.7 178 498-708 34-233 (292)
100 1hz4_A MALT regulatory protein 99.7 1.8E-16 6.2E-21 171.4 24.5 267 419-706 14-325 (373)
101 3fkc_A Transcriptional regulat 99.7 9.8E-18 3.4E-22 154.0 9.4 90 212-308 26-115 (116)
102 3e4b_A ALGK; tetratricopeptide 99.7 1.3E-15 4.3E-20 171.6 28.6 277 400-719 56-366 (452)
103 2ooe_A Cleavage stimulation fa 99.7 3.4E-15 1.2E-19 170.4 31.3 315 397-743 27-458 (530)
104 4gco_A Protein STI-1; structur 99.7 1E-16 3.4E-21 148.5 14.2 120 539-716 3-124 (126)
105 3qky_A Outer membrane assembly 99.7 1.4E-16 4.7E-21 164.2 16.6 189 498-694 32-252 (261)
106 2yhc_A BAMD, UPF0169 lipoprote 99.7 7.1E-16 2.4E-20 156.1 21.6 190 514-707 3-217 (225)
107 2vsy_A XCC0866; transferase, g 99.7 2.1E-16 7.1E-21 182.2 18.8 159 498-714 6-169 (568)
108 3dss_A Geranylgeranyl transfer 99.7 4.2E-15 1.4E-19 160.6 27.7 202 498-712 91-313 (331)
109 3urz_A Uncharacterized protein 99.7 1.7E-16 5.9E-21 159.0 15.1 191 454-682 7-198 (208)
110 3gyz_A Chaperone protein IPGC; 99.7 6.7E-17 2.3E-21 155.2 10.4 69 640-708 70-138 (151)
111 3q15_A PSP28, response regulat 99.7 7.8E-16 2.7E-20 167.7 19.6 241 417-705 99-367 (378)
112 1p5q_A FKBP52, FK506-binding p 99.7 1.3E-17 4.5E-22 180.5 5.1 200 427-702 73-293 (336)
113 3edt_B KLC 2, kinesin light ch 99.7 3.8E-16 1.3E-20 159.2 15.1 183 498-704 18-282 (283)
114 3q7a_A Farnesyltransferase alp 99.7 3.6E-15 1.2E-19 161.9 23.3 177 498-690 71-258 (349)
115 4f3v_A ESX-1 secretion system 99.7 7.7E-17 2.6E-21 170.0 9.6 197 498-723 23-253 (282)
116 3q7a_A Farnesyltransferase alp 99.7 2.2E-16 7.5E-21 171.4 13.3 190 507-720 46-255 (349)
117 3gyz_A Chaperone protein IPGC; 99.7 6.1E-16 2.1E-20 148.5 12.9 114 503-674 24-138 (151)
118 3nf1_A KLC 1, kinesin light ch 99.6 2.1E-15 7.3E-20 156.4 17.7 253 384-672 30-310 (311)
119 3as5_A MAMA; tetratricopeptide 99.6 3E-15 1E-19 142.6 17.0 155 498-676 25-180 (186)
120 3ulq_A Response regulator aspa 99.6 1.8E-15 6.3E-20 164.7 16.2 205 498-721 120-353 (383)
121 1p5q_A FKBP52, FK506-binding p 99.6 2.1E-17 7.2E-22 178.8 0.2 178 498-720 82-277 (336)
122 2ifu_A Gamma-SNAP; membrane fu 99.6 8.8E-16 3E-20 163.2 12.5 207 431-708 3-228 (307)
123 1dce_A Protein (RAB geranylger 99.6 3.1E-15 1.1E-19 173.4 17.5 174 524-721 37-240 (567)
124 1hz4_A MALT regulatory protein 99.6 4.6E-14 1.6E-18 152.4 25.4 263 453-738 16-320 (373)
125 1hh8_A P67PHOX, NCF-2, neutrop 99.6 9.7E-15 3.3E-19 144.5 18.4 144 515-718 6-166 (213)
126 3edt_B KLC 2, kinesin light ch 99.6 2.5E-15 8.4E-20 153.2 13.8 237 398-670 17-282 (283)
127 2ifu_A Gamma-SNAP; membrane fu 99.6 3.2E-15 1.1E-19 158.9 14.1 209 432-707 29-267 (307)
128 2vgx_A Chaperone SYCD; alterna 99.6 7.5E-15 2.6E-19 139.6 14.7 121 503-681 9-130 (148)
129 2hr2_A Hypothetical protein; a 99.6 1.9E-15 6.4E-20 145.9 10.4 115 515-680 11-142 (159)
130 2yhc_A BAMD, UPF0169 lipoprote 99.6 1.6E-14 5.6E-19 146.0 17.9 172 498-677 21-221 (225)
131 2hr2_A Hypothetical protein; a 99.6 1.4E-15 4.8E-20 146.8 8.1 113 549-707 12-135 (159)
132 2vgx_A Chaperone SYCD; alterna 99.6 7.5E-15 2.6E-19 139.6 12.4 116 535-708 7-123 (148)
133 2c2l_A CHIP, carboxy terminus 99.6 8.7E-15 3E-19 154.0 14.0 218 498-745 21-251 (281)
134 2xcb_A PCRH, regulatory protei 99.6 7.8E-15 2.7E-19 137.5 11.7 128 502-687 5-133 (142)
135 2r5s_A Uncharacterized protein 99.6 2.2E-14 7.6E-19 139.2 14.7 154 422-576 9-172 (176)
136 2vsy_A XCC0866; transferase, g 99.6 6E-14 2.1E-18 161.6 20.0 161 433-681 3-169 (568)
137 3qou_A Protein YBBN; thioredox 99.6 4.4E-14 1.5E-18 149.0 16.8 147 498-668 134-283 (287)
138 2fo7_A Synthetic consensus TPR 99.6 1.7E-13 5.8E-18 122.9 18.1 133 516-706 2-135 (136)
139 3rjv_A Putative SEL1 repeat pr 99.5 1.5E-13 5.3E-18 138.1 18.6 188 498-713 3-207 (212)
140 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 3.3E-16 1.1E-20 176.7 -1.4 160 527-696 246-407 (457)
141 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 6.9E-15 2.3E-19 165.9 9.4 141 498-662 251-407 (457)
142 2xcb_A PCRH, regulatory protei 99.5 2.5E-14 8.5E-19 134.0 11.1 115 536-708 5-120 (142)
143 1a17_A Serine/threonine protei 99.5 2.3E-13 7.8E-18 128.2 17.1 132 515-704 13-147 (166)
144 3upv_A Heat shock protein STI1 99.5 1.2E-13 4.2E-18 125.7 14.5 116 512-685 1-123 (126)
145 3sz7_A HSC70 cochaperone (SGT) 99.5 1.2E-13 4.2E-18 132.0 14.6 119 510-686 6-125 (164)
146 3q15_A PSP28, response regulat 99.5 1E-13 3.4E-18 151.0 14.7 227 453-721 103-350 (378)
147 2c2l_A CHIP, carboxy terminus 99.5 8.5E-14 2.9E-18 146.4 13.6 168 512-708 1-169 (281)
148 1hh8_A P67PHOX, NCF-2, neutrop 99.5 4.6E-13 1.6E-17 132.4 16.7 133 418-581 5-154 (213)
149 3sz7_A HSC70 cochaperone (SGT) 99.5 2.8E-13 9.7E-18 129.5 14.6 114 548-719 11-125 (164)
150 4gcn_A Protein STI-1; structur 99.5 2.7E-13 9.3E-18 125.2 13.1 109 513-672 6-115 (127)
151 2ast_A S-phase kinase-associat 99.5 1.5E-13 5.3E-18 133.1 11.2 114 220-337 3-147 (159)
152 2fbn_A 70 kDa peptidylprolyl i 99.5 7.3E-14 2.5E-18 137.9 9.0 139 498-694 21-176 (198)
153 4f3v_A ESX-1 secretion system 99.5 1.1E-13 3.7E-18 146.0 10.8 205 422-680 10-247 (282)
154 2lni_A Stress-induced-phosphop 99.5 7E-13 2.4E-17 119.8 14.4 122 510-689 11-133 (133)
155 1wao_1 Serine/threonine protei 99.5 1.8E-14 6.1E-19 163.5 4.2 138 513-708 4-155 (477)
156 2e2e_A Formate-dependent nitri 99.5 2.3E-13 7.8E-18 131.3 11.3 64 643-706 81-147 (177)
157 3upv_A Heat shock protein STI1 99.5 1.1E-12 3.8E-17 119.3 15.2 103 548-708 4-112 (126)
158 2vyi_A SGTA protein; chaperone 99.5 5.8E-13 2E-17 119.3 13.1 125 508-690 5-130 (131)
159 2qfc_A PLCR protein; TPR, HTH, 99.4 1.3E-12 4.5E-17 137.3 17.2 180 510-707 70-270 (293)
160 1xi4_A Clathrin heavy chain; a 99.4 1.1E-10 3.8E-15 143.2 36.2 238 457-720 1055-1327(1630)
161 3rkv_A Putative peptidylprolyl 99.4 7E-13 2.4E-17 126.5 12.6 115 514-686 10-144 (162)
162 1hxi_A PEX5, peroxisome target 99.4 7.2E-13 2.4E-17 121.4 12.0 79 630-708 41-119 (121)
163 3rkv_A Putative peptidylprolyl 99.4 1.4E-12 4.8E-17 124.3 14.3 121 548-708 11-131 (162)
164 2if4_A ATFKBP42; FKBP-like, al 99.4 7.6E-14 2.6E-18 151.0 4.4 143 508-708 172-333 (338)
165 3q49_B STIP1 homology and U bo 99.4 2.4E-12 8.2E-17 117.9 13.8 121 509-687 3-129 (137)
166 3u3w_A Transcriptional activat 99.4 5.5E-13 1.9E-17 140.2 10.7 69 637-705 193-268 (293)
167 2e2e_A Formate-dependent nitri 99.4 2.9E-12 9.8E-17 123.5 14.8 124 498-679 27-154 (177)
168 2fbn_A 70 kDa peptidylprolyl i 99.4 7.4E-13 2.5E-17 130.6 9.9 163 513-717 2-166 (198)
169 4gcn_A Protein STI-1; structur 99.4 7.4E-13 2.5E-17 122.2 9.3 104 606-709 7-118 (127)
170 1na0_A Designed protein CTPR3; 99.4 1.2E-11 4.1E-16 109.6 16.7 121 510-688 3-125 (125)
171 3rjv_A Putative SEL1 repeat pr 99.4 1.1E-11 3.8E-16 124.5 18.4 186 437-682 4-208 (212)
172 1zu2_A Mitochondrial import re 99.4 7.4E-13 2.5E-17 127.6 9.2 84 498-581 19-124 (158)
173 1zu2_A Mitochondrial import re 99.4 4.7E-13 1.6E-17 129.0 7.4 94 625-719 21-135 (158)
174 1xi4_A Clathrin heavy chain; a 99.4 2.6E-11 9E-16 148.6 24.3 253 420-694 1106-1375(1630)
175 2fo7_A Synthetic consensus TPR 99.4 1.8E-11 6.1E-16 109.5 17.0 130 421-580 3-135 (136)
176 3mv2_B Coatomer subunit epsilo 99.4 1.2E-11 4.1E-16 131.9 18.4 248 430-708 24-287 (310)
177 2dba_A Smooth muscle cell asso 99.3 1.1E-11 3.7E-16 114.3 14.3 120 507-684 20-143 (148)
178 1hxi_A PEX5, peroxisome target 99.3 5.5E-12 1.9E-16 115.4 10.7 85 498-582 34-119 (121)
179 3q49_B STIP1 homology and U bo 99.3 1.3E-11 4.5E-16 112.9 12.7 105 544-706 4-109 (137)
180 1a17_A Serine/threonine protei 99.3 4.4E-11 1.5E-15 112.4 16.6 134 417-580 11-149 (166)
181 1elw_A TPR1-domain of HOP; HOP 99.3 5E-11 1.7E-15 104.7 15.6 111 515-683 4-115 (118)
182 3gw4_A Uncharacterized protein 99.3 1.1E-11 3.9E-16 120.7 12.5 167 498-716 9-189 (203)
183 1ihg_A Cyclophilin 40; ppiase 99.3 1.5E-11 5E-16 135.0 14.6 124 515-696 223-363 (370)
184 2lni_A Stress-induced-phosphop 99.3 2.8E-11 9.7E-16 109.1 13.9 113 548-718 16-129 (133)
185 1wao_1 Serine/threonine protei 99.3 2E-12 6.8E-17 146.7 7.5 96 484-582 12-108 (477)
186 3k9i_A BH0479 protein; putativ 99.3 5.2E-12 1.8E-16 114.0 8.8 100 625-724 9-113 (117)
187 2kck_A TPR repeat; tetratricop 99.3 1.6E-11 5.4E-16 107.1 11.5 71 510-580 1-72 (112)
188 2xev_A YBGF; tetratricopeptide 99.3 5.7E-11 2E-15 107.4 15.0 118 516-688 3-124 (129)
189 3ro3_A PINS homolog, G-protein 99.3 1.6E-11 5.5E-16 113.5 10.9 140 515-706 9-161 (164)
190 2xev_A YBGF; tetratricopeptide 99.3 6.4E-11 2.2E-15 107.1 14.1 104 550-708 4-110 (129)
191 2vyi_A SGTA protein; chaperone 99.3 1.2E-10 4.1E-15 103.9 15.7 114 548-719 12-126 (131)
192 1elw_A TPR1-domain of HOP; HOP 99.3 5E-11 1.7E-15 104.7 12.8 108 609-716 6-115 (118)
193 3k9i_A BH0479 protein; putativ 99.2 5.2E-12 1.8E-16 114.0 5.9 108 528-693 3-114 (117)
194 1na0_A Designed protein CTPR3; 99.2 1.8E-10 6.3E-15 101.8 15.7 113 548-718 9-122 (125)
195 1b89_A Protein (clathrin heavy 99.2 3.2E-12 1.1E-16 142.2 4.9 239 421-703 34-311 (449)
196 2dba_A Smooth muscle cell asso 99.2 9E-11 3.1E-15 108.0 13.9 116 545-715 24-141 (148)
197 1elr_A TPR2A-domain of HOP; HO 99.2 7.6E-11 2.6E-15 105.5 12.0 125 512-688 1-126 (131)
198 2kck_A TPR repeat; tetratricop 99.2 7.7E-11 2.6E-15 102.6 11.3 98 610-707 9-110 (112)
199 2if4_A ATFKBP42; FKBP-like, al 99.2 3E-11 1E-15 130.6 9.8 154 418-582 178-333 (338)
200 2qfc_A PLCR protein; TPR, HTH, 99.2 3.8E-10 1.3E-14 118.4 17.8 161 420-580 76-269 (293)
201 1b89_A Protein (clathrin heavy 99.2 1.7E-11 5.7E-16 136.4 7.1 239 427-719 11-253 (449)
202 1ihg_A Cyclophilin 40; ppiase 99.2 5.9E-11 2E-15 130.2 10.9 127 549-717 224-351 (370)
203 4ajy_C Transcription elongatio 99.2 6.4E-11 2.2E-15 105.0 8.7 81 220-303 4-97 (97)
204 3ly7_A Transcriptional activat 99.1 7.3E-10 2.5E-14 120.4 18.0 91 631-722 268-358 (372)
205 1elr_A TPR2A-domain of HOP; HO 99.1 1.9E-10 6.3E-15 102.9 10.5 110 607-716 4-121 (131)
206 2kat_A Uncharacterized protein 99.1 1.6E-10 5.6E-15 103.3 9.2 84 625-708 4-87 (115)
207 3u3w_A Transcriptional activat 99.1 6.1E-10 2.1E-14 116.8 14.7 137 517-671 117-268 (293)
208 3gw4_A Uncharacterized protein 99.1 3.2E-10 1.1E-14 110.3 11.3 169 461-688 2-194 (203)
209 2kat_A Uncharacterized protein 99.1 4E-10 1.4E-14 100.8 10.5 84 498-581 2-86 (115)
210 4b4t_Q 26S proteasome regulato 99.0 5.7E-10 2E-14 122.2 12.0 217 456-703 9-245 (434)
211 3ma5_A Tetratricopeptide repea 99.0 3.8E-10 1.3E-14 99.3 7.8 73 635-707 2-74 (100)
212 3ro3_A PINS homolog, G-protein 99.0 2.5E-09 8.7E-14 98.5 13.4 140 417-580 7-161 (164)
213 2l6j_A TPR repeat-containing p 99.0 1.7E-10 5.9E-15 101.2 5.0 67 640-706 4-70 (111)
214 1fs1_B SKP1, cyclin A/CDK2-ass 99.0 6.9E-10 2.4E-14 105.1 9.3 99 220-327 4-129 (141)
215 4b4t_Q 26S proteasome regulato 99.0 1.3E-09 4.3E-14 119.5 12.4 173 515-705 4-206 (434)
216 2l6j_A TPR repeat-containing p 99.0 1.8E-09 6E-14 94.6 10.5 94 606-699 3-103 (111)
217 2p1m_A SKP1-like protein 1A; F 99.0 1.6E-10 5.3E-15 112.0 3.8 111 220-337 6-146 (160)
218 1na3_A Designed protein CTPR2; 99.0 2.2E-09 7.5E-14 90.6 9.8 82 637-718 6-88 (91)
219 3ma5_A Tetratricopeptide repea 99.0 1.3E-09 4.6E-14 95.7 8.5 72 510-581 2-74 (100)
220 2kc7_A BFR218_protein; tetratr 98.8 4.9E-09 1.7E-13 90.7 7.1 57 642-706 37-93 (99)
221 1na3_A Designed protein CTPR2; 98.8 3.2E-08 1.1E-12 83.3 11.9 48 641-688 44-91 (91)
222 2eqx_A Kelch repeat and BTB do 98.8 2.9E-09 9.9E-14 95.6 4.3 93 315-409 5-98 (105)
223 3mv2_B Coatomer subunit epsilo 98.8 1.1E-07 3.7E-12 101.4 16.2 199 438-697 85-306 (310)
224 3u64_A Protein TP_0956; tetrat 98.8 1.6E-07 5.4E-12 98.5 17.0 82 625-706 182-272 (301)
225 2kc7_A BFR218_protein; tetratr 98.8 2.2E-08 7.4E-13 86.5 8.9 68 643-710 3-72 (99)
226 4e6h_A MRNA 3'-END-processing 98.7 4.8E-07 1.6E-11 106.7 19.5 227 501-743 329-574 (679)
227 3ly7_A Transcriptional activat 98.7 6.1E-07 2.1E-11 97.5 18.3 143 419-581 196-343 (372)
228 4e6h_A MRNA 3'-END-processing 98.6 1.9E-06 6.4E-11 101.7 22.3 226 471-719 329-588 (679)
229 3bee_A Putative YFRE protein; 98.6 2E-07 6.7E-12 81.6 9.4 71 636-706 2-75 (93)
230 1klx_A Cysteine rich protein B 98.5 7.5E-07 2.6E-11 83.1 12.6 117 562-710 9-133 (138)
231 1hv2_A Elongin C, ELC1; protei 98.5 4.8E-07 1.6E-11 80.2 8.9 79 220-303 6-99 (99)
232 3n71_A Histone lysine methyltr 98.5 5.4E-07 1.9E-11 102.3 11.7 132 520-701 314-462 (490)
233 1pc2_A Mitochondria fission pr 98.4 5.1E-07 1.7E-11 86.1 9.5 90 626-715 18-113 (152)
234 1klx_A Cysteine rich protein B 98.4 2.8E-06 9.6E-11 79.2 14.1 113 433-580 9-129 (138)
235 3drz_A BTB/POZ domain-containi 98.4 1.5E-06 5.1E-11 78.1 10.1 95 218-316 5-106 (107)
236 2v5f_A Prolyl 4-hydroxylase su 98.4 1.9E-06 6.6E-11 76.3 10.3 77 639-715 4-88 (104)
237 3n71_A Histone lysine methyltr 98.3 1.7E-06 5.8E-11 98.2 12.0 127 429-578 319-465 (490)
238 3v7d_A Suppressor of kinetocho 98.3 2.7E-06 9.1E-11 82.8 10.9 110 220-332 9-149 (169)
239 2fnj_C Transcription elongatio 98.3 7.3E-07 2.5E-11 78.6 6.2 80 220-303 3-96 (96)
240 3bee_A Putative YFRE protein; 98.3 3E-06 1E-10 74.0 9.6 71 511-581 2-76 (93)
241 1pc2_A Mitochondria fission pr 98.2 6.9E-06 2.4E-10 78.2 10.9 99 498-602 15-119 (152)
242 2uy1_A Cleavage stimulation fa 98.2 0.00071 2.4E-08 76.7 29.3 343 376-739 11-412 (493)
243 3u64_A Protein TP_0956; tetrat 98.2 8.4E-05 2.9E-09 77.9 19.2 84 498-581 180-273 (301)
244 3qww_A SET and MYND domain-con 98.0 8.2E-06 2.8E-10 91.2 8.7 64 640-703 340-411 (433)
245 2v5f_A Prolyl 4-hydroxylase su 97.9 3.3E-05 1.1E-09 68.2 9.0 88 547-685 4-91 (104)
246 2uy1_A Cleavage stimulation fa 97.9 0.00048 1.7E-08 78.1 20.7 47 627-674 200-246 (493)
247 1vcb_B Protein (elongin C); tu 97.9 2E-05 7E-10 71.2 6.7 80 220-303 19-112 (112)
248 1nzn_A CGI-135 protein, fissio 97.7 0.00012 4E-09 67.4 9.1 89 628-716 23-117 (126)
249 3qww_A SET and MYND domain-con 97.7 6.4E-05 2.2E-09 83.9 8.5 64 514-577 339-411 (433)
250 3qwp_A SET and MYND domain-con 97.7 6.5E-05 2.2E-09 83.8 8.1 64 640-703 329-400 (429)
251 3qwp_A SET and MYND domain-con 97.6 0.00022 7.7E-09 79.4 10.9 113 523-685 295-424 (429)
252 3drx_A BTB/POZ domain-containi 97.5 0.00018 6.3E-09 71.2 8.3 97 216-316 9-112 (202)
253 1nzn_A CGI-135 protein, fissio 97.2 0.0018 6.3E-08 59.4 10.4 97 499-601 19-121 (126)
254 1y8m_A FIS1; mitochondria, unk 96.6 0.02 7E-07 53.4 12.2 91 626-716 22-120 (144)
255 4g26_A Pentatricopeptide repea 96.4 0.12 4.1E-06 58.5 19.3 167 518-711 29-214 (501)
256 3o48_A Mitochondria fission 1 96.3 0.02 6.9E-07 52.8 10.0 79 637-715 37-120 (134)
257 3kvt_A Potassium channel prote 96.1 0.0023 7.9E-08 58.0 2.7 84 220-307 7-93 (115)
258 1y8m_A FIS1; mitochondria, unk 95.8 0.13 4.6E-06 47.9 13.0 85 511-601 35-124 (144)
259 3o48_A Mitochondria fission 1 95.8 0.058 2E-06 49.7 10.4 83 514-602 39-126 (134)
260 1s1g_A Potassium voltage-gated 95.6 0.02 6.7E-07 52.5 6.8 89 220-315 15-110 (124)
261 4g26_A Pentatricopeptide repea 95.6 0.48 1.6E-05 53.5 19.8 154 427-581 34-210 (501)
262 2nz0_B Potassium voltage-gated 95.5 0.011 3.9E-07 55.3 4.9 80 220-306 37-121 (140)
263 1t1d_A Protein (potassium chan 95.3 0.01 3.5E-07 52.3 3.4 82 220-307 3-90 (100)
264 1nn7_A Potassium channel KV4.2 95.2 0.0078 2.7E-07 53.5 2.3 80 220-306 2-86 (105)
265 2ff4_A Probable regulatory pro 94.8 0.66 2.3E-05 50.5 17.1 76 644-719 175-257 (388)
266 1qsa_A Protein (soluble lytic 94.7 4 0.00014 47.2 24.2 87 622-710 268-354 (618)
267 1zbp_A Hypothetical protein VP 94.3 0.29 9.9E-06 50.5 11.7 129 523-674 5-134 (273)
268 3ffl_A Anaphase-promoting comp 94.3 0.16 5.5E-06 48.6 9.1 59 516-574 64-148 (167)
269 4h7y_A Dual specificity protei 94.1 0.4 1.4E-05 45.2 11.2 53 625-677 79-131 (161)
270 1qsa_A Protein (soluble lytic 92.1 5.2 0.00018 46.3 19.2 234 460-726 223-485 (618)
271 2ff4_A Probable regulatory pro 92.1 0.41 1.4E-05 52.2 9.4 100 461-576 125-233 (388)
272 3ffl_A Anaphase-promoting comp 92.1 0.2 6.8E-06 48.0 6.0 68 638-705 18-94 (167)
273 4gns_B Protein CSD3, chitin bi 91.4 1 3.6E-05 53.2 12.4 56 641-696 338-393 (754)
274 3kae_A CDC27, possible protein 91.2 5.2 0.00018 38.4 14.4 117 508-674 26-148 (242)
275 4h7y_A Dual specificity protei 90.5 2.7 9.4E-05 39.6 11.8 51 498-548 77-127 (161)
276 1ya0_A SMG-7 transcript varian 90.4 0.99 3.4E-05 50.9 10.6 63 646-708 158-220 (497)
277 3mkq_A Coatomer beta'-subunit; 90.2 6 0.0002 46.0 17.7 49 522-574 659-707 (814)
278 4gns_B Protein CSD3, chitin bi 88.4 2.2 7.5E-05 50.5 11.9 54 521-574 343-397 (754)
279 1zbp_A Hypothetical protein VP 84.7 2.3 7.9E-05 43.8 8.2 60 649-708 6-65 (273)
280 3mkq_A Coatomer beta'-subunit; 80.2 21 0.00073 41.3 15.5 38 523-570 637-674 (814)
281 4b4t_S RPN3, 26S proteasome re 79.6 1.8 6.2E-05 48.7 5.6 136 521-676 142-306 (523)
282 3kae_A CDC27, possible protein 78.2 38 0.0013 32.5 13.2 66 516-581 63-147 (242)
283 2eqx_A Kelch repeat and BTB do 78.2 3.8 0.00013 35.7 6.2 34 286-319 8-41 (105)
284 4fhn_B Nucleoporin NUP120; pro 76.9 14 0.00048 45.8 13.1 139 520-698 817-962 (1139)
285 3mkq_B Coatomer subunit alpha; 75.6 53 0.0018 31.5 13.9 51 521-575 11-61 (177)
286 3txn_A 26S proteasome regulato 75.5 45 0.0015 36.1 15.1 61 515-575 139-208 (394)
287 2r9r_B Paddle chimera voltage 74.0 3.2 0.00011 46.9 5.7 81 220-307 54-141 (514)
288 3txn_A 26S proteasome regulato 72.9 22 0.00075 38.6 11.8 76 627-702 80-167 (394)
289 2vkp_A BTB/POZ domain-containi 71.0 2.9 0.0001 36.1 3.5 33 318-351 77-109 (109)
290 4fhn_B Nucleoporin NUP120; pro 68.7 27 0.00091 43.3 12.8 112 454-572 845-962 (1139)
291 1ya0_A SMG-7 transcript varian 68.2 14 0.00048 41.4 9.2 61 498-558 169-230 (497)
292 4b4t_R RPN7, 26S proteasome re 57.7 41 0.0014 36.6 10.4 68 511-578 127-198 (429)
293 2crb_A Nuclear receptor bindin 54.6 13 0.00045 31.7 4.3 28 640-667 15-42 (97)
294 3htm_A Speckle-type POZ protei 54.3 8.1 0.00028 36.1 3.5 34 286-319 132-165 (172)
295 3spa_A Mtrpol, DNA-directed RN 53.7 1E+02 0.0035 37.7 13.4 72 514-585 164-240 (1134)
296 2z8h_A Transcription regulator 53.1 4.4 0.00015 36.9 1.3 35 318-353 101-135 (138)
297 3spa_A Mtrpol, DNA-directed RN 52.9 1.2E+02 0.0042 37.0 13.9 66 516-581 128-200 (1134)
298 2crb_A Nuclear receptor bindin 52.9 16 0.00054 31.3 4.5 29 515-543 15-43 (97)
299 1r29_A B-cell lymphoma 6 prote 52.5 9.3 0.00032 33.9 3.4 32 318-350 95-126 (127)
300 2yy9_A Zinc finger and BTB dom 51.2 5.1 0.00017 36.4 1.4 35 318-353 87-121 (135)
301 1o9d_A 14-3-3-like protein C; 46.1 2.5E+02 0.0086 28.4 16.0 71 657-738 152-234 (260)
302 4b4t_R RPN7, 26S proteasome re 44.8 48 0.0016 36.1 8.3 100 604-703 128-237 (429)
303 1buo_A POZ domain, protein (pr 44.6 18 0.00061 31.8 4.0 32 318-350 89-120 (121)
304 3ubw_A 14-3-3E, 14-3-3 protein 43.9 2.7E+02 0.0093 28.2 18.7 72 656-738 172-255 (261)
305 2vpk_A Myoneurin; transcriptio 43.8 13 0.00045 32.3 2.9 30 318-348 86-115 (116)
306 2q81_A MIZ-1 protein; BTB/POZ 43.5 15 0.00052 32.2 3.3 30 318-348 88-117 (119)
307 3b84_A Zinc finger and BTB dom 42.6 9.5 0.00032 33.6 1.8 32 318-350 86-117 (119)
308 2ast_A S-phase kinase-associat 42.2 28 0.00095 32.5 5.1 75 286-364 49-138 (159)
309 3hqi_A Speckle-type POZ protei 41.7 15 0.00052 38.0 3.5 34 286-319 272-305 (312)
310 2if5_A Zinc finger and BTB dom 40.0 21 0.00073 31.1 3.7 29 318-347 91-119 (120)
311 4b4t_S RPN3, 26S proteasome re 39.7 64 0.0022 36.2 8.2 68 519-586 235-308 (523)
312 3re2_A Predicted protein; meni 39.2 66 0.0023 34.3 7.6 44 500-543 276-324 (472)
313 3u84_A Menin; MLL, JUND, ledgf 39.1 64 0.0022 35.0 7.6 34 510-543 313-346 (550)
314 1fs1_B SKP1, cyclin A/CDK2-ass 39.0 61 0.0021 29.6 6.8 92 269-364 25-133 (141)
315 3uzd_A 14-3-3 protein gamma; s 38.5 3.2E+02 0.011 27.5 18.8 72 656-738 147-230 (248)
316 3ax2_A Mitochondrial import re 37.3 42 0.0014 27.4 4.6 32 519-550 21-52 (73)
317 3ltm_A Alpha-REP4; protein eng 37.1 2.5E+02 0.0087 26.0 11.4 73 623-701 111-183 (211)
318 2ijq_A Hypothetical protein; s 33.0 1.3E+02 0.0043 28.4 7.9 60 644-703 36-104 (161)
319 2w2u_A Hypothetical P60 katani 31.7 51 0.0017 27.4 4.4 33 416-448 16-48 (83)
320 2plx_B Peptide inhibitor; heli 31.3 37 0.0013 21.1 2.5 22 325-346 2-23 (26)
321 3esl_A Checkpoint serine/threo 31.1 1.5E+02 0.005 29.0 8.2 99 635-737 75-185 (202)
322 3mkq_B Coatomer subunit alpha; 29.2 1.5E+02 0.0053 28.2 7.9 67 638-712 32-98 (177)
323 2ppi_A Gigaxonin; BTB domain, 27.3 21 0.00073 32.6 1.5 29 318-347 115-143 (144)
324 3m5b_A Zinc finger and BTB dom 27.1 36 0.0012 30.0 2.9 31 318-349 87-117 (119)
325 4eoz_A Speckle-type POZ protei 27.1 22 0.00075 31.9 1.5 34 318-352 91-124 (145)
326 4gq4_A Menin; tumor suppressor 26.7 2.3E+02 0.0078 30.9 9.3 120 561-733 258-389 (489)
327 1om2_A Protein (mitochondrial 25.9 68 0.0023 27.5 4.2 32 519-550 24-55 (95)
328 4a1g_A Mitotic checkpoint seri 25.8 2.4E+02 0.0081 26.2 8.4 58 657-714 82-141 (152)
329 2ijq_A Hypothetical protein; s 25.8 3.6E+02 0.012 25.2 9.7 58 519-576 36-103 (161)
330 3hve_A Gigaxonin; ubiquitin, c 25.6 33 0.0011 34.3 2.6 34 286-319 131-164 (256)
331 2w2u_A Hypothetical P60 katani 25.3 73 0.0025 26.5 4.3 25 644-668 23-47 (83)
332 3i3n_A Kelch-like protein 11; 24.9 43 0.0015 34.0 3.4 66 286-351 139-217 (279)
333 2wpv_A GET4, UPF0363 protein Y 23.6 6.2E+02 0.021 26.1 13.2 73 626-701 113-195 (312)
334 2v6y_A AAA family ATPase, P60 23.6 87 0.003 25.9 4.5 30 418-447 10-39 (83)
335 2v6y_A AAA family ATPase, P60 23.2 84 0.0029 26.0 4.3 25 644-668 15-39 (83)
336 2br9_A 14-3-3E, 14-3-3 protein 22.9 5.6E+02 0.019 25.4 16.4 72 656-738 146-229 (234)
337 4gq2_M Nucleoporin NUP120; bet 22.9 7.5E+02 0.026 29.6 14.4 115 521-675 816-932 (950)
338 4a5x_A MITD1, MIT domain-conta 22.2 87 0.003 26.1 4.2 30 674-703 16-45 (86)
339 3ga1_A Nucleus accumbens-assoc 21.3 13 0.00044 33.2 -1.3 33 317-350 95-127 (129)
340 4b4t_P 26S proteasome regulato 20.9 6.7E+02 0.023 27.0 12.3 59 518-576 140-205 (445)
341 4ady_A RPN2, 26S proteasome re 20.7 7.1E+02 0.024 30.0 13.1 95 650-748 570-666 (963)
342 2wpv_A GET4, UPF0363 protein Y 20.4 7.2E+02 0.025 25.6 15.8 56 645-700 151-214 (312)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=3e-30 Score=281.15 Aligned_cols=319 Identities=16% Similarity=0.091 Sum_probs=203.2
Q ss_pred hhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcch--hhhhhHHHHHHHhCCHHHHHHHHH
Q 004426 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLIN 475 (754)
Q Consensus 398 ~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~--~a~~~larv~~~~G~~~~A~~~~~ 475 (754)
.+....+++.+++..+. ...+++.+|.++...|++++|+..|+++++++|. .++.++|.++...|++++|...+.
T Consensus 49 ~~~a~~~~~~a~~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 125 (388)
T 1w3b_A 49 LDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125 (388)
T ss_dssp HHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455555555443322 2456667777777777777777777777776443 356667777777777777777777
Q ss_pred HHHHccCCCHHHHHHhhhc----CChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHH
Q 004426 476 SIISEHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDC 550 (754)
Q Consensus 476 ~aI~~~~~~g~ay~~r~~y----~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~ 550 (754)
+++...|+...++...+.. +..++|+..|+++++.+|+++.+|.++|.++..+|++++|+..|+++++++|+ +..
T Consensus 126 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 205 (388)
T 1w3b_A 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205 (388)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 7777777665555554421 23367777777777777777777777777777777777777777777777775 566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchh-hhHHHHHHhhhhc--------cccchhhhhhhhhcccccc
Q 004426 551 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS-GDHLVKLLNHHVR--------SWSPADCWIKLYDRWSSVD 621 (754)
Q Consensus 551 ~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~-~~~~~~~l~~~~~--------~~~~A~~~~~l~~~~~~~~ 621 (754)
+..+|.++...|++++|+..|+++++++|++...+.+.+ +....+......+ ..+..++|..+...+...+
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Confidence 666777777777777777777777777776643222111 1111111111110 1112233444444444444
Q ss_pred ccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 622 DIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 700 (754)
Q Consensus 622 d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~A 700 (754)
++. |+..++++++++|.++.+++++|.++..+|++++|+..++++++++|+++.+++++|+++..+|++++|+..|+++
T Consensus 286 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 544 5667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhcCCChH-HHHHHHHHhhc
Q 004426 701 ISIERTFE-AFFLKAYILAD 719 (754)
Q Consensus 701 i~l~~~~~-a~~~~~~~~~~ 719 (754)
++++|++. +++..|.++.+
T Consensus 366 ~~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 366 IRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HTTCTTCHHHHHHHHHHHHH
T ss_pred HhhCCCCHHHHHhHHHHHHH
Confidence 77777766 77777776654
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.4e-28 Score=267.83 Aligned_cols=330 Identities=13% Similarity=0.034 Sum_probs=276.8
Q ss_pred hhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcch--hhhhhHHHHHHHhCCHHHHHHHHH
Q 004426 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLIN 475 (754)
Q Consensus 398 ~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~--~a~~~larv~~~~G~~~~A~~~~~ 475 (754)
.+.+...++.+++..++. ..++..+|.++..+|++++|...++++++.+|. .++..+|.++...|++++|+..|.
T Consensus 15 ~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 91 (388)
T 1w3b_A 15 FEAAERHCMQLWRQEPDN---TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91 (388)
T ss_dssp HHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 455666777666554443 456778999999999999999999999998654 578899999999999999999999
Q ss_pred HHHHccCCCHHHHHHhhh----cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHH
Q 004426 476 SIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDC 550 (754)
Q Consensus 476 ~aI~~~~~~g~ay~~r~~----y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~ 550 (754)
+++...|+...++...+. .+..++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++.+|+ +..
T Consensus 92 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 171 (388)
T 1w3b_A 92 HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999998887777653 234499999999999999999999999999999999999999999999999996 788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccc---------------hhhhhhhhh
Q 004426 551 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSP---------------ADCWIKLYD 615 (754)
Q Consensus 551 ~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------A~~~~~l~~ 615 (754)
+.++|.++...|++++|+..|+++++++|++.. +...++.+....+++++ +.+|..+..
T Consensus 172 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 245 (388)
T 1w3b_A 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD------AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHH
Confidence 899999999999999999999999999999854 33344444444444443 344555555
Q ss_pred ccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHH
Q 004426 616 RWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 694 (754)
Q Consensus 616 ~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 694 (754)
.....+++. |+..++++++++|.++.+|+++|.++.++|++++|+..|+++++++|++++++.++|.++..+|++++|+
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 555566666 8889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChH-HHHHHHHHhhccCCCCCchhHHHHHHHHHhcC
Q 004426 695 SRAEKSISIERTFE-AFFLKAYILADTNLDPESSTYVIQLLEEALRC 740 (754)
Q Consensus 695 ~~~e~Ai~l~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (754)
..|++++++.|++. +++..|.++.... --..-+..+++|++.
T Consensus 326 ~~~~~al~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 326 RLYRKALEVFPEFAAAHSNLASVLQQQG----KLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHTTT----CCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhh
Confidence 99999999999876 8888888887654 234456777787765
No 3
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.97 E-value=2.5e-30 Score=270.54 Aligned_cols=192 Identities=13% Similarity=0.170 Sum_probs=158.4
Q ss_pred ccCCCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCC--CCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCCh
Q 004426 211 CLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFV--ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCP 288 (754)
Q Consensus 211 ~~~~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~--Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~ 288 (754)
...++...+|+|+|||++|+|||.||+++|+||++||++++. |+...+|+| +++++++|+.+++|+|||++. ++.
T Consensus 25 l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l--~~v~~~~f~~ll~~~Yt~~~~-i~~ 101 (256)
T 3hve_A 25 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIEL--EGISVMVMREILDYIFSGQIR-LNE 101 (256)
T ss_dssp CCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEEC--SSCCHHHHHHHHHHHHHSCCC-CC-
T ss_pred HHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEe--CCCCHHHHHHHHhhccCCCCc-ccH
Confidence 345566667999999999999999999999999999999988 677789999 899999999999999999998 999
Q ss_pred hHHHHHHHHhchhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCchhhhhh-----
Q 004426 289 GIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI----- 363 (754)
Q Consensus 289 ~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~e~f~~L----- 363 (754)
+++.+++.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|++..|.+.|.+||.+||.++.++++|.+|
T Consensus 102 ~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l 180 (256)
T 3hve_A 102 DTIQDVVQAADLLLLTDLKTLCCEFLEGCIA-AENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKL 180 (256)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCC-SSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHH
T ss_pred hHHHHHHHHHHHHChHHHHHHHHHHHHhhCC-HhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHH
Confidence 9999999999999999999999999999999 8999999999999999999999999999999999999999876
Q ss_pred ---ccCchhhHHHHhcccchhHHHHHHHHHHhhhhcchhhHHHHHHHhhhch
Q 004426 364 ---FCSSEATERLANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECS 412 (754)
Q Consensus 364 ---l~~~~~~~~l~~v~~~~~~~~a~LswV~~d~~~r~~~~v~LLer~vr~~ 412 (754)
+.+++. .|..+..++.+++.|+.++...|..+...+++. +|++
T Consensus 181 ~~lL~~d~L-----~v~~E~~v~~av~~W~~~~~~~R~~~~~~ll~~-VRf~ 226 (256)
T 3hve_A 181 KEVISLEKL-----NVGNERYVFEAVIRWIAHDTEIRKVHMKDVMSA-LWVS 226 (256)
T ss_dssp HHHHHCC------------CTTHHHHTTTCCC--CCSTTTHHHHHHH-HHHH
T ss_pred HHHHccCCC-----CCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHh-CCCC
Confidence 222222 356678899999999999988888888888877 5654
No 4
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.96 E-value=5.5e-30 Score=271.36 Aligned_cols=193 Identities=19% Similarity=0.262 Sum_probs=165.9
Q ss_pred CCCCCCcEEEEEC---CeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCC------CCCHHHHHHHHHHhhcCCC
Q 004426 213 SLEEDDSVTFCVR---DKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHD------GVSVEGLRAVEVYTRTSRV 283 (754)
Q Consensus 213 ~~~~~~~V~f~V~---g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~------~vs~~~f~~lL~ylYTg~l 283 (754)
.++..++|+|+|| |++|+|||.||+++|+||++||+++|+|+.+.+|+| + ++++++|+.+++|+|||++
T Consensus 28 ~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l--~~~~~~~~v~~~~f~~ll~~~Ytg~~ 105 (279)
T 3i3n_A 28 RQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEM--RKWSSEPGPEPDTVEAVIEYMYTGRI 105 (279)
T ss_dssp HHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEEC--CCCSSTTCSCHHHHHHHHHHHHHSEE
T ss_pred hcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEe--ccccccCCCCHHHHHHHHHhhCcCCc
Confidence 4566667999998 999999999999999999999999999999999999 6 8999999999999999999
Q ss_pred CCCChhHHHHHHHHhchhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCchhhhhh
Q 004426 284 DLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 363 (754)
Q Consensus 284 ~~i~~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~e~f~~L 363 (754)
. ++.+++.+++.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|++..|.+.|.+||.+||.+++++++|.+|
T Consensus 106 ~-i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L 183 (279)
T 3i3n_A 106 R-VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLH-LSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTL 183 (279)
T ss_dssp E-EETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGS
T ss_pred c-cCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCC-cchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcC
Confidence 9 8999999999999999999999999999999999 8999999999999999999999999999999999999999876
Q ss_pred --------ccCchhhHHHHhcccchhHHHHHHHHHHhhhhcchhhHHHHHHHhhhchhhh
Q 004426 364 --------FCSSEATERLANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTER 415 (754)
Q Consensus 364 --------l~~~~~~~~l~~v~~~~~~~~a~LswV~~d~~~r~~~~v~LLer~vr~~~~~ 415 (754)
+.+++. .+..+..++.+++.|+.++...|..+...+++. +|++...
T Consensus 184 ~~~~l~~lL~~d~L-----~v~sE~~vf~av~~W~~~~~~~r~~~~~~ll~~-VRf~l~~ 237 (279)
T 3i3n_A 184 PFHLIRDWLSDLEI-----TVDSEEVLFETVLKWVQRNAEERERYFEELFKL-LRLSQMK 237 (279)
T ss_dssp CHHHHHHHHTCSSC-----CCSCHHHHHHHHHHHHHTTHHHHTTTHHHHHTT-SCGGGSC
T ss_pred CHHHHHHHhcCcCC-----CCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHh-cCCCCCC
Confidence 222222 256678899999999999988888888888876 6766443
No 5
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=1.3e-25 Score=237.94 Aligned_cols=311 Identities=12% Similarity=-0.015 Sum_probs=254.3
Q ss_pred HHHHHHHhhhhcchhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHH
Q 004426 385 YFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKY 462 (754)
Q Consensus 385 a~LswV~~d~~~r~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~ 462 (754)
..++....... +.+.+...+++++...+.. ..+++.+|.++...|++++|+..|+++++..+ ..++..+|.++.
T Consensus 7 ~~~~~~~~~~g-~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 7 LELGKKLLAAG-QLADALSQFHAAVDGDPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34445444433 3667888888877654433 46888999999999999999999999999854 467888999999
Q ss_pred HhCCHHHHHHHHHHHHHccC---CCHHHHHHhh----------------hcCChhhHHHHHHHHHhhCCCChHHHHHHHH
Q 004426 463 KVGQQYSAYKLINSIISEHK---PTGWMYQERS----------------LYNLGREKIVDLNYASELDPTLSFPYKYRAV 523 (754)
Q Consensus 463 ~~G~~~~A~~~~~~aI~~~~---~~g~ay~~r~----------------~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~ 523 (754)
..|++++|+..+.+++...| +...++...+ ..+..++|+..|+++++.+|+++.++.++|.
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999 6555554331 1223399999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhc
Q 004426 524 AKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR 602 (754)
Q Consensus 524 ~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~ 602 (754)
++..+|++++|+..++++++++|+ +..+..+|.++..+|++++|+..|+++++++|++.. +......+.....
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR------CFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchH------HHHHHHHHHHHHH
Confidence 999999999999999999999995 888899999999999999999999999999999743 2222211111111
Q ss_pred cccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChh----HHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHH
Q 004426 603 SWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSF----LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 677 (754)
Q Consensus 603 ~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~----~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 677 (754)
.+..+. .+...+++. |+..++++++.+|.++. ++.++|.++..+|++++|+..++++++++|++++++
T Consensus 237 ~~~~a~-------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 309 (359)
T 3ieg_A 237 LIESAE-------ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNAL 309 (359)
T ss_dssp HHHHHH-------HHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHH-------HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHH
Confidence 112222 222224444 68899999999999984 477899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHH
Q 004426 678 VYEGWILYDTGHREEALSRAEKSISIERTFE-AFFL 712 (754)
Q Consensus 678 ~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~ 712 (754)
+++|.+++.+|++++|+..|++|++++|++. +...
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 345 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 345 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 9999999999999999999999999999977 4433
No 6
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=7.5e-26 Score=249.93 Aligned_cols=315 Identities=11% Similarity=-0.005 Sum_probs=258.2
Q ss_pred HHHHHHHHhhhhcchhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHH
Q 004426 384 YYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAK 461 (754)
Q Consensus 384 ~a~LswV~~d~~~r~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~ 461 (754)
+..++....... +.+.+..++++++...+.. ..+++.+|.++...|++++|+..|+++++.++ ..++..+|.++
T Consensus 29 ~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 29 HLELGKKLLAAG-QLADALSQFHAAVDGDPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 344444444433 3667888888877654432 57889999999999999999999999999854 45788899999
Q ss_pred HHhCCHHHHHHHHHHHHHccCCCH---HHHHHh------------h----hcCChhhHHHHHHHHHhhCCCChHHHHHHH
Q 004426 462 YKVGQQYSAYKLINSIISEHKPTG---WMYQER------------S----LYNLGREKIVDLNYASELDPTLSFPYKYRA 522 (754)
Q Consensus 462 ~~~G~~~~A~~~~~~aI~~~~~~g---~ay~~r------------~----~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg 522 (754)
...|++++|...+.+++...|+.. .++... + ..+..++|+..|+++++++|+++.++.++|
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 184 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 999999999999999999999766 443322 1 112339999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhh
Q 004426 523 VAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV 601 (754)
Q Consensus 523 ~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~ 601 (754)
.++..+|++++|+..|+++++++|+ +..+..+|.++...|++++|+..|+++++++|++..+. .....+....
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~------~~~~~~~~~~ 258 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF------AHYKQVKKLN 258 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHH------HHHHHHHHHH
Confidence 9999999999999999999999995 88899999999999999999999999999999984322 2221111111
Q ss_pred ccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChh----HHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 004426 602 RSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSF----LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER 676 (754)
Q Consensus 602 ~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~----~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 676 (754)
. +..++..+...+++. |+..++++++++|.++. +++++|.++.++|++++|+..++++++++|+++++
T Consensus 259 ~-------~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 331 (450)
T 2y4t_A 259 K-------LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNA 331 (450)
T ss_dssp H-------HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred H-------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence 1 112222222334444 68899999999999954 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHH
Q 004426 677 LVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAY 715 (754)
Q Consensus 677 ~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~ 715 (754)
+.++|.++..+|++++|+..|+++++++|+.. ++...+.
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 99999999999999999999999999999987 7777773
No 7
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=5.7e-26 Score=238.69 Aligned_cols=276 Identities=11% Similarity=-0.003 Sum_probs=244.2
Q ss_pred HHhhhhhhHhhccchHHHHHHHHHHhhhcch--hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc----
Q 004426 421 ALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY---- 494 (754)
Q Consensus 421 Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~--~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y---- 494 (754)
.+..+|..+...|++++|+..|+++++..+. .++..++.++...|++++|+..+.+++...|+.+.++...+..
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 3456788888899999999999999998553 4566788999999999999999999999999988888777642
Q ss_pred C-ChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004426 495 N-LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTL 572 (754)
Q Consensus 495 ~-~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~ 572 (754)
+ ..++|+..|+++++++|+++.+|.++|.++..+|++++|+..|++++++.|+ ...+..+|.++...|++++|+..|+
T Consensus 104 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS 183 (330)
T ss_dssp CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3 3478999999999999999999999999999999999999999999999996 7888889999999999999999999
Q ss_pred HHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcC---------CCChhHH
Q 004426 573 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND---------PGKSFLR 643 (754)
Q Consensus 573 ~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~---------P~~~~~~ 643 (754)
++++++|++ ..+...++.+....+++++| +..+++++.+. |..+.++
T Consensus 184 ~al~~~~~~------~~~~~~l~~~~~~~~~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (330)
T 3hym_B 184 QALSIAPED------PFVMHEVGVVAFQNGEWKTA------------------EKWFLDALEKIKAIGNEVTVDKWEPLL 239 (330)
T ss_dssp HHHTTCTTC------HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHTTTSCSCTTTTCCHHH
T ss_pred HHHHhCCCC------hHHHHHHHHHHHHcccHHHH------------------HHHHHHHHHHhhhccccccccHHHHHH
Confidence 999999987 33444444444444555554 88999999987 8888999
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhcc
Q 004426 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILADT 720 (754)
Q Consensus 644 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~~ 720 (754)
+++|.++..+|++++|+..++++++++|++++++.++|++++.+|++++|+..|+++++++|++. +++..|.++.-.
T Consensus 240 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 317 (330)
T 3hym_B 240 NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMY 317 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877 888888887543
No 8
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=1.5e-26 Score=255.84 Aligned_cols=252 Identities=12% Similarity=-0.058 Sum_probs=205.1
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCC-HHHHHHHHHHHHHccCCCHHHHHHhhhcC
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQ-QYSAYKLINSIISEHKPTGWMYQERSLYN 495 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~-~~~A~~~~~~aI~~~~~~g~ay~~r~~y~ 495 (754)
..+++++|.++...|++++|+..|++||+++| ..++.++|.++..+|+ +
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~---------------------------- 148 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL---------------------------- 148 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH----------------------------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCH----------------------------
Confidence 45677777777777777777777777777754 3456666666666664 4
Q ss_pred ChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 496 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLAL 574 (754)
Q Consensus 496 ~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~a 574 (754)
++|+..|++|++++|+++.+|++||.++..+|++++|+..|++||+++|+ +.+|++||+++..+|++++|+.+|+++
T Consensus 149 --~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 149 --HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp --HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred --HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 67888899999999999999999999999999999999999999999995 888999999999999999999999999
Q ss_pred HhcCCCccccccchhhhHHHHHHhhh-hccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHc
Q 004426 575 LALESNYMMFHGRVSGDHLVKLLNHH-VRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL 653 (754)
Q Consensus 575 l~l~P~~~~~~~~~~~~~~~~~l~~~-~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~l 653 (754)
++++|++. .+...++.+... .++.++|. ...++..+++||+++|++..+|+++|.++..+
T Consensus 227 l~l~P~~~------~a~~~lg~~l~~l~~~~~eA~-------------~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~ 287 (382)
T 2h6f_A 227 LKEDVRNN------SVWNQRYFVISNTTGYNDRAV-------------LEREVQYTLEMIKLVPHNESAWNYLKGILQDR 287 (382)
T ss_dssp HHHCTTCH------HHHHHHHHHHHHTTCSCSHHH-------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT
T ss_pred HHhCCCCH------HHHHHHHHHHHHhcCcchHHH-------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHcc
Confidence 99999883 344444444333 23334441 00125789999999999999999999999998
Q ss_pred C--CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcC---------CHHHHHHHHHHH-HhcCCChH-HHHHHHHHhhcc
Q 004426 654 N--CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG---------HREEALSRAEKS-ISIERTFE-AFFLKAYILADT 720 (754)
Q Consensus 654 g--~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G---------~~eeAl~~~e~A-i~l~~~~~-a~~~~~~~~~~~ 720 (754)
| ++++|+..++++ +.+|++..++..+|++++.+| .+++|+..|+++ ++++|... .|..++-+|...
T Consensus 288 g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 288 GLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 8 689999999998 999999999999999999985 369999999999 99999998 566666666543
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=1.8e-24 Score=229.26 Aligned_cols=294 Identities=17% Similarity=0.064 Sum_probs=253.4
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhh---
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL--- 493 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~--- 493 (754)
..++..+|..+...|++++|+..|+++++..+ ..++..+|.++...|++++|+..+.+++...|+...++...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45678899999999999999999999999854 4678889999999999999999999999999988777777753
Q ss_pred -cCChhhHHHHHHHHHhhCC---CChHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHH
Q 004426 494 -YNLGREKIVDLNYASELDP---TLSFPYKYR------------AVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAW 556 (754)
Q Consensus 494 -y~~g~eAl~dl~kAi~LdP---~~~~ay~~r------------g~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~ 556 (754)
.+..++|+..|+++++++| ++..++..+ |.++...|++++|+..++++++.+|+ +..+..+|.
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 2344999999999999999 999999888 79999999999999999999999995 888899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcC
Q 004426 557 LFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND 636 (754)
Q Consensus 557 ~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~ 636 (754)
++..+|++++|+..|+++++++|++. .+...++.+....+++++| +..++++++.+
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A------------------~~~~~~a~~~~ 218 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLKSDNT------EAFYKISTLYYQLGDHELS------------------LSEVRECLKLD 218 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSCCH------HHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHhhC
Confidence 99999999999999999999999873 3444444444444444444 88999999999
Q ss_pred CCChhHHH------------hHHHHHHHcCCHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 637 PGKSFLRF------------RQSLLLLRLNCQKAAMRCLRLARNHSSSEH----ERLVYEGWILYDTGHREEALSRAEKS 700 (754)
Q Consensus 637 P~~~~~~~------------~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~----ea~~~~G~~ly~~G~~eeAl~~~e~A 700 (754)
|.++.++. .+|.++.+.|++++|+..++++++..|+++ .++.++|.+++.+|++++|+..|+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 298 (359)
T 3ieg_A 219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV 298 (359)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999765 458899999999999999999999999988 45778999999999999999999999
Q ss_pred HhcCCChH-HHHHHHHHhhccCCCCCchhHHHHHHHHHhcC
Q 004426 701 ISIERTFE-AFFLKAYILADTNLDPESSTYVIQLLEEALRC 740 (754)
Q Consensus 701 i~l~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (754)
++++|+.. +++..|.++.... --..-+..++.|++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~g----~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 299 LQMEPDNVNALKDRAEAYLIEE----MYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTT
T ss_pred HHhCcccHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhc
Confidence 99999665 9999999887653 344566677777765
No 10
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.94 E-value=4.9e-27 Score=230.23 Aligned_cols=145 Identities=19% Similarity=0.253 Sum_probs=131.7
Q ss_pred ccCCCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhH
Q 004426 211 CLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGI 290 (754)
Q Consensus 211 ~~~~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~ 290 (754)
..+++..++|+|+|+|++|+|||.||+++|+||++||.++|.|+...+|+| +++++++|+.+|+|+|||++. ++.++
T Consensus 28 l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l--~~~~~~~f~~~l~~~Yt~~~~-~~~~~ 104 (172)
T 3htm_A 28 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP-NLDKM 104 (172)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEE--CSSCHHHHHHHHHHHHHSCCT-TGGGT
T ss_pred HHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEe--cCCCHHHHHHHHHHHhCCCCC-CcHHH
Confidence 345566677999999999999999999999999999999999999999999 999999999999999999999 89999
Q ss_pred HHHHHHHhchhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCchh
Q 004426 291 VLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPK 359 (754)
Q Consensus 291 vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~e~ 359 (754)
+.+++.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|+++.|.+.|.+||.+||.+++++++
T Consensus 105 ~~~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~~ 172 (172)
T 3htm_A 105 ADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 172 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999 899999999999999999999999999999999988763
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.4e-24 Score=237.89 Aligned_cols=295 Identities=17% Similarity=0.067 Sum_probs=252.3
Q ss_pred HHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhh--
Q 004426 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL-- 493 (754)
Q Consensus 418 ka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~-- 493 (754)
...++..+|..+...|++++|+..|+++++..+ ..++..+|.++...|++++|+..+.+++...|+...++...+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 456788999999999999999999999999854 4678889999999999999999999999999998888777753
Q ss_pred --cCChhhHHHHHHHHHhhCCCCh---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHH
Q 004426 494 --YNLGREKIVDLNYASELDPTLS---FPYKYR------------AVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRA 555 (754)
Q Consensus 494 --y~~g~eAl~dl~kAi~LdP~~~---~ay~~r------------g~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra 555 (754)
.+..++|+..|+++++++|++. .++..+ |.++...|++++|+..|+++++++|+ +..+..+|
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 184 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 2344999999999999999998 776655 77799999999999999999999995 78889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHc
Q 004426 556 WLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN 635 (754)
Q Consensus 556 ~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l 635 (754)
.++...|++++|+..|+++++++|++. .+...++.+.....++++ |+..+++++.+
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~------------------A~~~~~~~~~~ 240 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLKNDNT------EAFYKISTLYYQLGDHEL------------------SLSEVRECLKL 240 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHCSCH------HHHHHHHHHHHHTTCHHH------------------HHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHH------------------HHHHHHHHHHh
Confidence 999999999999999999999999873 333333333333334433 48899999999
Q ss_pred CCCChhHHHhH------------HHHHHHcCCHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 636 DPGKSFLRFRQ------------SLLLLRLNCQKAAMRCLRLARNHSSSEH----ERLVYEGWILYDTGHREEALSRAEK 699 (754)
Q Consensus 636 ~P~~~~~~~~~------------g~~L~~lg~~eeAl~~~~~Al~l~P~~~----ea~~~~G~~ly~~G~~eeAl~~~e~ 699 (754)
+|.++..+... |.++...|++++|+..|+++++++|+++ .++.++|.++..+|++++|+..+++
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999998776 9999999999999999999999999985 4899999999999999999999999
Q ss_pred HHhcCCChH-HHHHHHHHhhccCCCCCchhHHHHHHHHHhcC
Q 004426 700 SISIERTFE-AFFLKAYILADTNLDPESSTYVIQLLEEALRC 740 (754)
Q Consensus 700 Ai~l~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (754)
++++.|++. +++..|.++.... --..-+..++.|++.
T Consensus 321 a~~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 321 VLQMEPDNVNALKDRAEAYLIEE----MYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTT
T ss_pred HHHhCcccHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHh
Confidence 999999765 9999999887653 234455666666654
No 12
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=2.5e-24 Score=246.90 Aligned_cols=295 Identities=12% Similarity=0.006 Sum_probs=254.2
Q ss_pred hhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHH
Q 004426 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLIN 475 (754)
Q Consensus 398 ~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~ 475 (754)
.+.+..+++++...+. ....+..+|..+...|++++|+..|+++++.++ ..++..++.++...|++++|...+.
T Consensus 288 ~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 288 LRRAEDYLSSINGLEK----SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISN 363 (597)
T ss_dssp HHHHHHHHHTSTTGGG----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCc----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4456677777665532 356788999999999999999999999998854 4577788999999999999999999
Q ss_pred HHHHccCCCHHHHHHhhh----cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHH
Q 004426 476 SIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDC 550 (754)
Q Consensus 476 ~aI~~~~~~g~ay~~r~~----y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~ 550 (754)
+++...|+...++...+. .+..++|+..|+++++++|++..+|..+|.++...|++++|+..|++++++.|+ ...
T Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 443 (597)
T 2xpi_A 364 DLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443 (597)
T ss_dssp HHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHH
T ss_pred HHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence 999999887776666542 234499999999999999999999999999999999999999999999999995 788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHH
Q 004426 551 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVIN 630 (754)
Q Consensus 551 ~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~ 630 (754)
+..++.++...|++++|+..|+++++++|++. .+...++.+....+++++ |+..++
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~------------------A~~~~~ 499 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYALFQYDP------LLLNELGVVAFNKSDMQT------------------AINHFQ 499 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHTTCHHH------------------HHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHhCCHHH------------------HHHHHH
Confidence 88999999999999999999999999999873 333334333334444444 488999
Q ss_pred HHHHc------CCCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 631 QMLIN------DPGK-SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 631 ~aL~l------~P~~-~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
+++++ +|.+ +.+|+++|.++.++|++++|++.++++++++|+++.+++.+|.++...|++++|+..|++++++
T Consensus 500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999 7775 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChH-HHHHHHHHhhcc
Q 004426 704 ERTFE-AFFLKAYILADT 720 (754)
Q Consensus 704 ~~~~~-a~~~~~~~~~~~ 720 (754)
+|++. ++++.|.+++.+
T Consensus 580 ~p~~~~~~~~l~~~~~~~ 597 (597)
T 2xpi_A 580 SPNEIMASDLLKRALEEN 597 (597)
T ss_dssp CTTCHHHHHHHHHTTC--
T ss_pred CCCChHHHHHHHHHHhcC
Confidence 99987 999999887653
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.4e-24 Score=240.05 Aligned_cols=319 Identities=11% Similarity=0.039 Sum_probs=241.6
Q ss_pred HHHHHHHHHhhhhcchhhHHHHHHHhhhchh------hhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc------
Q 004426 383 LYYFLSQVAMEKDRVSNTTVMLLERLGECST------ERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH------ 450 (754)
Q Consensus 383 ~~a~LswV~~d~~~r~~~~v~LLer~vr~~~------~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~------ 450 (754)
.+-.++.+.+.... .+.++..+++++.... ........+.++|.++...|++++|+.+|++++++.+
T Consensus 53 ~yn~Lg~~~~~~G~-~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQ-NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 35567888766544 6677777777665321 1223456789999999999999999999999998732
Q ss_pred ----hhhhhhHHHHHHH--hCCHHHHHHHHHHHHHccCCCHHHHHHhh-------hcCChhhHHHHHHHHHhhCCCChHH
Q 004426 451 ----IYSLAGLARAKYK--VGQQYSAYKLINSIISEHKPTGWMYQERS-------LYNLGREKIVDLNYASELDPTLSFP 517 (754)
Q Consensus 451 ----~~a~~~larv~~~--~G~~~~A~~~~~~aI~~~~~~g~ay~~r~-------~y~~g~eAl~dl~kAi~LdP~~~~a 517 (754)
...+...|.++.. .+++++|+..|.++++..|+++.++...+ .+...++|+..|.+|++++|+++.+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 1234445555544 45689999999999999999887776654 2344578999999999999999999
Q ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhH
Q 004426 518 YKYRAVAKMEE----GQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDH 592 (754)
Q Consensus 518 y~~rg~~l~~l----g~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~ 592 (754)
+.++|..+..+ |++++|+..|++++.++|+ +..+.++|.++...|++++|+..|++|++++|++...+.+.+...
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 99999887665 6788999999999999996 788899999999999999999999999999999865443333221
Q ss_pred HHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 593 LVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (754)
Q Consensus 593 ~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 671 (754)
.. ......+..+............++ |+..++++++++|.++.+++++|.++..+|++++|+..|++|++++|
T Consensus 292 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 292 RA------KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HH------HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HH------HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 11 111111111111111111112223 67899999999999999999999999999999999999999999999
Q ss_pred CchhH---HHHHHH-HHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 672 SEHER---LVYEGW-ILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 672 ~~~ea---~~~~G~-~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
++.+. +++.|. .++.+|++++|+..|++|++++|...
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 87664 566775 45789999999999999999988764
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.93 E-value=1.3e-24 Score=233.13 Aligned_cols=271 Identities=13% Similarity=0.054 Sum_probs=222.1
Q ss_pred hHhhccchHHHHH-HHHHHhhhcc------hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhh----cCC
Q 004426 428 VMFEREEYKDACY-YFEAAADAGH------IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL----YNL 496 (754)
Q Consensus 428 v~~~~g~~~eA~~-~f~~AL~~~~------~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~----y~~ 496 (754)
.+.-.|+|++|+. .|++++.+.+ ..++..+|.++...|++.+|+..+.+++...|+...++..++. .+.
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 4555689999999 9999988843 2357789999999999999999999999999998888877763 234
Q ss_pred hhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHH----------------HHHHHHH
Q 004426 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLE----------------LRAWLFI 559 (754)
Q Consensus 497 g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~----------------~ra~~~~ 559 (754)
.++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ ...+. ..+.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 489999999999999999999999999999999999999999999999996 44332 345555
Q ss_pred HcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCC
Q 004426 560 AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK 639 (754)
Q Consensus 560 ~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~ 639 (754)
..|++++|+..|+++++++|+.. ...+...++.+....+++++ |+..+++++.++|.+
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~~l~~~~~~~g~~~~------------------A~~~~~~al~~~~~~ 250 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSI----DPDVQCGLGVLFNLSGEYDK------------------AVDCFTAALSVRPND 250 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSC----CHHHHHHHHHHHHHTTCHHH------------------HHHHHHHHHHHCTTC
T ss_pred hcccHHHHHHHHHHHHHhCcCcc----cHHHHHHHHHHHHHcCCHHH------------------HHHHHHHHHHhCcCC
Confidence 99999999999999999999831 12333344434334444444 488999999999999
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh------------
Q 004426 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF------------ 707 (754)
Q Consensus 640 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~------------ 707 (754)
+.+++++|.++..+|++++|+..|+++++++|+++.+++++|.+++.+|++++|+..|++++++.|+.
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHhhccC
Q 004426 708 EAFFLKAYILADTN 721 (754)
Q Consensus 708 ~a~~~~~~~~~~~~ 721 (754)
.+++..|.++...+
T Consensus 331 ~~~~~l~~~~~~~g 344 (368)
T 1fch_A 331 NIWSTLRLALSMLG 344 (368)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 58888888876554
No 15
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.4e-24 Score=238.81 Aligned_cols=325 Identities=15% Similarity=0.063 Sum_probs=263.6
Q ss_pred HHHHHHhhhhcchhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcch--hhhhhHHHHHHH
Q 004426 386 FLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYK 463 (754)
Q Consensus 386 ~LswV~~d~~~r~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~--~a~~~larv~~~ 463 (754)
.++....... +.+.++..+++++...++ ..++..+|.++...|++++|+..|+++++.+|. .++..+|.++..
T Consensus 11 ~~g~~~~~~g-~~~~A~~~~~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 11 DKGNQFFRNK-KYDDAIKYYNWALELKED----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHTS-CHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-cHHHHHHHHHHHHhcCcc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 3344444333 366788888887765543 567889999999999999999999999998654 578889999999
Q ss_pred hCCHHHHHHHHHHHHHccCCC-----------------------------------------------------------
Q 004426 464 VGQQYSAYKLINSIISEHKPT----------------------------------------------------------- 484 (754)
Q Consensus 464 ~G~~~~A~~~~~~aI~~~~~~----------------------------------------------------------- 484 (754)
+|++++|+..+.+++...|..
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 999999999999998877521
Q ss_pred --------------------HHHHHHhhh-------cCChhhHHHHHHHHHh-----h--C-------CCChHHHHHHHH
Q 004426 485 --------------------GWMYQERSL-------YNLGREKIVDLNYASE-----L--D-------PTLSFPYKYRAV 523 (754)
Q Consensus 485 --------------------g~ay~~r~~-------y~~g~eAl~dl~kAi~-----L--d-------P~~~~ay~~rg~ 523 (754)
+.++...+. .+..++|+..|+++++ + + |.++.+|..+|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 344444432 1233899999999999 6 3 566789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhcc
Q 004426 524 AKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRS 603 (754)
Q Consensus 524 ~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~ 603 (754)
++...|++++|+..|+++++.+|++..+..+|.++...|++++|+..|+++++++|++. .+...++.+....++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS------SVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT------HHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH------HHHHHHHHHHHHhCC
Confidence 99999999999999999999999966677899999999999999999999999999873 334444444444444
Q ss_pred ccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 004426 604 WSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI 683 (754)
Q Consensus 604 ~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ 683 (754)
+++| +..++++++++|.++.+++++|.++..+|++++|+..++++++.+|+++++++++|.+
T Consensus 320 ~~~A------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 381 (514)
T 2gw1_A 320 YDQA------------------GKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEI 381 (514)
T ss_dssp TTHH------------------HHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred HHHH------------------HHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 4444 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCChH-------HHHHHHHHhhccCCCCCchhHHHHHHHHHhcC
Q 004426 684 LYDTGHREEALSRAEKSISIERTFE-------AFFLKAYILADTNLDPESSTYVIQLLEEALRC 740 (754)
Q Consensus 684 ly~~G~~eeAl~~~e~Ai~l~~~~~-------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (754)
++.+|++++|+..|++++.+.|+.. +++..|.++.... +-..-..-+..++.|++.
T Consensus 382 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 382 LTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP-TVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC-CTTHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh-hcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999988864 8999999987610 012234456666666653
No 16
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=1.3e-24 Score=234.14 Aligned_cols=235 Identities=15% Similarity=0.061 Sum_probs=188.8
Q ss_pred HHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCCh
Q 004426 420 LALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (754)
Q Consensus 420 ~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g 497 (754)
..++.+|..+...|++++|+..|+++++..+ ..++..+|.++...|++
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~------------------------------ 115 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENE------------------------------ 115 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH------------------------------
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCH------------------------------
Confidence 3466677777777777777777777777643 34555566666666554
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHH----------HHHHHHcCCHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELR----------AWLFIAADDYES 566 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~r----------a~~~~~lgd~~~ 566 (754)
++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ ...+..+ +.++..+|++++
T Consensus 116 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 116 QAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHH
Confidence 67778888999999999999999999999999999999999999999996 4444444 789999999999
Q ss_pred HHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhH
Q 004426 567 ALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQ 646 (754)
Q Consensus 567 Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~ 646 (754)
|+..|+++++++|+.. ...+...++.+....+++++| +..++++++++|.++.+|+++
T Consensus 196 A~~~~~~al~~~p~~~----~~~~~~~l~~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~l 253 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMI----DPDLQTGLGVLFHLSGEFNRA------------------IDAFNAALTVRPEDYSLWNRL 253 (365)
T ss_dssp HHHHHHHHHHHSCSSC----CHHHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcCcc----CHHHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999831 123344444444444444444 889999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 647 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (754)
Q Consensus 647 g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~ 706 (754)
|.++..+|++++|+..|++|++++|+++.+++++|.+++.+|++++|+..|++|+++.|+
T Consensus 254 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 254 GATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999999999999999999999999999999999999999987
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.2e-23 Score=237.48 Aligned_cols=277 Identities=13% Similarity=0.040 Sum_probs=202.9
Q ss_pred chHHHHHHHHHHhhhcch---------hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc----CChhhH
Q 004426 434 EYKDACYYFEAAADAGHI---------YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREK 500 (754)
Q Consensus 434 ~~~eA~~~f~~AL~~~~~---------~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y----~~g~eA 500 (754)
++++|+..|+++++..+. .++..+|.++...|++++|...+.+++...|+ ..++...+.. +..++|
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHH
Confidence 455555555555555332 23556677888888888888888888888887 6677666532 233888
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 501 IVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALES 579 (754)
Q Consensus 501 l~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P 579 (754)
+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 375 (537)
T 3fp2_A 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888888899999999988888885 77788888888888999999999988888888
Q ss_pred CccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHH------hHHHHHHHc
Q 004426 580 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRF------RQSLLLLRL 653 (754)
Q Consensus 580 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~------~~g~~L~~l 653 (754)
++. .+...++.+....+++++ |+..++++++++|.+...+. ++|.++.++
T Consensus 376 ~~~------~~~~~l~~~~~~~g~~~~------------------A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~ 431 (537)
T 3fp2_A 376 TLP------EVPTFFAEILTDRGDFDT------------------AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQ 431 (537)
T ss_dssp TCT------HHHHHHHHHHHHTTCHHH------------------HHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHH
T ss_pred CCh------HHHHHHHHHHHHhCCHHH------------------HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHH
Confidence 773 233333433333344444 48899999999998887654 556888888
Q ss_pred ----------CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH------HHHHHHh
Q 004426 654 ----------NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAF------FLKAYIL 717 (754)
Q Consensus 654 ----------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~------~~~~~~~ 717 (754)
|++++|+..++++++++|++++++.++|++++.+|++++|+..|++++++.|+.... ...+.+.
T Consensus 432 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 511 (537)
T 3fp2_A 432 SSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQ 511 (537)
T ss_dssp HTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred hhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997722 1122223
Q ss_pred hccCCCCCchhHHHHHHH
Q 004426 718 ADTNLDPESSTYVIQLLE 735 (754)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~ 735 (754)
.....||+-+..+.+++.
T Consensus 512 ~~~~~~~~~~~~~~~~~~ 529 (537)
T 3fp2_A 512 KRLRADPIISAKMELTLA 529 (537)
T ss_dssp HHHHTC------------
T ss_pred HhccccHHHHHHHhhHHH
Confidence 334557777777666554
No 18
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.93 E-value=1e-24 Score=241.19 Aligned_cols=215 Identities=14% Similarity=0.086 Sum_probs=185.2
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQ-IRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALL 575 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~-~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al 575 (754)
++|+..|++|++++|+++.+|++||.++..+|+ +++|+..|++||+++|+ +.+|++||.++..+|++++|+.+|++|+
T Consensus 114 ~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal 193 (382)
T 2h6f_A 114 ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADIL 193 (382)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 788889999999999999999999999999997 99999999999999995 8999999999999999999999999999
Q ss_pred hcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHH-cC
Q 004426 576 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR-LN 654 (754)
Q Consensus 576 ~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~-lg 654 (754)
+++|++ ..+...++.+....+++++| +.+++++|+++|+++.+|+++|.++.. .|
T Consensus 194 ~ldP~~------~~a~~~lg~~~~~~g~~~eA------------------l~~~~~al~l~P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 194 NQDAKN------YHAWQHRQWVIQEFKLWDNE------------------LQYVDQLLKEDVRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHCTTC------HHHHHHHHHHHHHHTCCTTH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HhCccC------HHHHHHHHHHHHHcCChHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 999998 34455555555555555555 899999999999999999999999999 56
Q ss_pred CHHHH-----HHHHHHHHhcCCCchhHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCChH-HHHHHHHHhhccCCC---
Q 004426 655 CQKAA-----MRCLRLARNHSSSEHERLVYEGWILYDTG--HREEALSRAEKSISIERTFE-AFFLKAYILADTNLD--- 723 (754)
Q Consensus 655 ~~eeA-----l~~~~~Al~l~P~~~ea~~~~G~~ly~~G--~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~~~~~--- 723 (754)
..++| +..|++|++++|++..+++++|+++..+| ++++|+..++++ +++|+.. ++..+|.++....-+
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 65778 59999999999999999999999999999 799999999998 9999887 888888777664311
Q ss_pred -CCc-hhHHHHHHHHH
Q 004426 724 -PES-STYVIQLLEEA 737 (754)
Q Consensus 724 -~~~-~~~~~~~~~~~ 737 (754)
... -...+++++.+
T Consensus 329 ~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 329 NKEDILNKALELCEIL 344 (382)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 111 14456666665
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.5e-23 Score=236.61 Aligned_cols=306 Identities=11% Similarity=0.054 Sum_probs=244.0
Q ss_pred HHHHHHHHhhhhcchhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHH
Q 004426 384 YYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAK 461 (754)
Q Consensus 384 ~a~LswV~~d~~~r~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~ 461 (754)
+..++........ .+.++..++++++..++. ..++.++|.++...|++++|+..|+++++++| ..++..+|.++
T Consensus 28 ~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 28 LKNRGNHFFTAKN-FNEAIKYYQYAIELDPNE---PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHTTC-CC-CHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-HHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3445555544433 667888888887765443 57889999999999999999999999999965 45788899999
Q ss_pred HHhCCHHHHHHHHHHHHHccCCCHHHH-----------------------------------------------------
Q 004426 462 YKVGQQYSAYKLINSIISEHKPTGWMY----------------------------------------------------- 488 (754)
Q Consensus 462 ~~~G~~~~A~~~~~~aI~~~~~~g~ay----------------------------------------------------- 488 (754)
...|++++|+..+. ++...|+....+
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 99999999999995 665554422211
Q ss_pred -------------HHh--h-hc-----------CChhhHHHHHHHHHhhCCCChH-------HHHHHHHHHHHcCCHHHH
Q 004426 489 -------------QER--S-LY-----------NLGREKIVDLNYASELDPTLSF-------PYKYRAVAKMEEGQIRAA 534 (754)
Q Consensus 489 -------------~~r--~-~y-----------~~g~eAl~dl~kAi~LdP~~~~-------ay~~rg~~l~~lg~~~eA 534 (754)
... . .+ +...+|+..|+++++.+|++.. +|..+|.++...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 000 0 00 1237889999999999999855 688899999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhh
Q 004426 535 ISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLY 614 (754)
Q Consensus 535 l~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~ 614 (754)
+..|+++++++|++..+..+|.++...|++++|+..|+++++++|++. .+...++.+....+++++|
T Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A------- 329 (537)
T 3fp2_A 263 QVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYP------PTYYHRGQMYFILQDYKNA------- 329 (537)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHH-------
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH------HHHHHHHHHHHhcCCHHHH-------
Confidence 999999999999988888999999999999999999999999999873 3444444444444444444
Q ss_pred hccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHH
Q 004426 615 DRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 694 (754)
Q Consensus 615 ~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 694 (754)
+..++++++++|.++.+++++|.++..+|++++|+..++++++++|++++++.++|.++..+|++++|+
T Consensus 330 -----------~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 330 -----------KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp -----------HHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChH-------HHHHHHHHhh
Q 004426 695 SRAEKSISIERTFE-------AFFLKAYILA 718 (754)
Q Consensus 695 ~~~e~Ai~l~~~~~-------a~~~~~~~~~ 718 (754)
..|++++++.|+.. .++.+|.++.
T Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 429 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILA 429 (537)
T ss_dssp HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHH
Confidence 99999999987653 2455555443
No 20
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=5.4e-23 Score=235.82 Aligned_cols=290 Identities=9% Similarity=-0.036 Sum_probs=247.0
Q ss_pred HhhhhhhHhhccchHHHHHHHHHHhhh-cchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhh----hcCC
Q 004426 422 LHQLGCVMFEREEYKDACYYFEAAADA-GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERS----LYNL 496 (754)
Q Consensus 422 l~~LG~v~~~~g~~~eA~~~f~~AL~~-~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~----~y~~ 496 (754)
+..++..+..+|++++|+..|+++++. +...++..++.++...|++++|...+.+++...|+...++...+ ..+.
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGE 354 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCC
Confidence 444578888999999999999999887 34567888999999999999999999999998886544443332 1233
Q ss_pred hhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 497 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALL 575 (754)
Q Consensus 497 g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al 575 (754)
.++|...|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|+ ...+..++.++...|++++|+..|++++
T Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 399999999999999999999999999999999999999999999999996 7889999999999999999999999999
Q ss_pred hcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCC
Q 004426 576 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNC 655 (754)
Q Consensus 576 ~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~ 655 (754)
+++|++. .+...++.+....+++++ |+..++++++++|.++.+|+.+|.++.+.|+
T Consensus 435 ~~~~~~~------~~~~~l~~~~~~~g~~~~------------------A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (597)
T 2xpi_A 435 RLFQGTH------LPYLFLGMQHMQLGNILL------------------ANEYLQSSYALFQYDPLLLNELGVVAFNKSD 490 (597)
T ss_dssp HTTTTCS------HHHHHHHHHHHHHTCHHH------------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred HhCccch------HHHHHHHHHHHHcCCHHH------------------HHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 9999873 233333333333344444 4889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc------CCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhccCCCCCch
Q 004426 656 QKAAMRCLRLARNH------SSSE-HERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILADTNLDPESS 727 (754)
Q Consensus 656 ~eeAl~~~~~Al~l------~P~~-~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~~~~~~~~~ 727 (754)
+++|++.|++++++ +|++ +.++.++|+++...|++++|+..|++++++.|+.. +|+..|.++...+ --
T Consensus 491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----~~ 566 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK----IP 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT----CH
T ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC----CH
Confidence 99999999999999 7775 88999999999999999999999999999999665 9999999988765 34
Q ss_pred hHHHHHHHHHhc
Q 004426 728 TYVIQLLEEALR 739 (754)
Q Consensus 728 ~~~~~~~~~~~~ 739 (754)
...++.++++++
T Consensus 567 ~~A~~~~~~~l~ 578 (597)
T 2xpi_A 567 GLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 456667777765
No 21
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.8e-23 Score=233.80 Aligned_cols=273 Identities=15% Similarity=0.021 Sum_probs=237.0
Q ss_pred HHHHhhhhhhHhh---ccchHHHHHHHHHHhh-----h-----------cchhhhhhHHHHHHHhCCHHHHHHHHHHHHH
Q 004426 419 MLALHQLGCVMFE---REEYKDACYYFEAAAD-----A-----------GHIYSLAGLARAKYKVGQQYSAYKLINSIIS 479 (754)
Q Consensus 419 a~Al~~LG~v~~~---~g~~~eA~~~f~~AL~-----~-----------~~~~a~~~larv~~~~G~~~~A~~~~~~aI~ 479 (754)
..++..+|..+.. .|++++|+..|+++++ + ....++..+|.++...|++++|+..+.+++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4456677777776 8999999999999998 4 2245678899999999999999999999999
Q ss_pred ccCCCHHHHHHhhhc----CChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHH
Q 004426 480 EHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELR 554 (754)
Q Consensus 480 ~~~~~g~ay~~r~~y----~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~r 554 (754)
..|. ..++...+.. +..++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+..+
T Consensus 266 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 344 (514)
T 2gw1_A 266 LFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344 (514)
T ss_dssp HCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHH
T ss_pred hCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHH
Confidence 9998 7777777542 33389999999999999999999999999999999999999999999999996 7888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHH
Q 004426 555 AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI 634 (754)
Q Consensus 555 a~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~ 634 (754)
|.++...|++++|+..|+++++++|++. .+...++.+....+++++ |+..+++++.
T Consensus 345 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~------------------A~~~~~~a~~ 400 (514)
T 2gw1_A 345 ACLAYRENKFDDCETLFSEAKRKFPEAP------EVPNFFAEILTDKNDFDK------------------ALKQYDLAIE 400 (514)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHHSTTCS------HHHHHHHHHHHHTTCHHH------------------HHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHcccCH------HHHHHHHHHHHHCCCHHH------------------HHHHHHHHHH
Confidence 9999999999999999999999999873 333334433333444444 4889999999
Q ss_pred cCCCChh------HHHhHHHHHHH---cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 635 NDPGKSF------LRFRQSLLLLR---LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 705 (754)
Q Consensus 635 l~P~~~~------~~~~~g~~L~~---lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~ 705 (754)
++|.++. +++++|.++.. +|++++|+..++++++++|++++++..+|.++..+|++++|+..|+++++++|
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 9999976 99999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ChH-HHHHHHHH
Q 004426 706 TFE-AFFLKAYI 716 (754)
Q Consensus 706 ~~~-a~~~~~~~ 716 (754)
++. +.....+.
T Consensus 481 ~~~~~~~~~~~~ 492 (514)
T 2gw1_A 481 TMEEKLQAITFA 492 (514)
T ss_dssp SHHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 988 55444443
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=4.1e-24 Score=229.17 Aligned_cols=260 Identities=13% Similarity=0.049 Sum_probs=229.2
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc--
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY-- 494 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y-- 494 (754)
..+++++|..+...|++++|+..|+++++..+ ..++..+|.++...|++++|+..+.+++...|+.+.++...+..
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34577899999999999999999999999854 45788899999999999999999999999999988888777632
Q ss_pred --CChhhHHHHHHHHHhhCCCChHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHcCCC---HHHHHH
Q 004426 495 --NLGREKIVDLNYASELDPTLSFPYK----------------YRAVAKMEEGQIRAAISEIDRIIVFKLS---VDCLEL 553 (754)
Q Consensus 495 --~~g~eAl~dl~kAi~LdP~~~~ay~----------------~rg~~l~~lg~~~eAl~~~~rAl~l~p~---~~~~~~ 553 (754)
+..++|+..|+++++++|++..++. .+|.++ ..|++++|+..|+++++++|+ +..+..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 3448999999999999999998886 567666 999999999999999999997 577888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHH
Q 004426 554 RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML 633 (754)
Q Consensus 554 ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL 633 (754)
+|.++...|++++|+..|+++++++|++. .+...++.+....+++++| +..+++++
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~l~~~~~~~g~~~~A------------------~~~~~~al 278 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDY------LLWNKLGATLANGNQSEEA------------------VAAYRRAL 278 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHH
Confidence 99999999999999999999999999873 3444444444444444444 88999999
Q ss_pred HcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----------hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 634 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE-----------HERLVYEGWILYDTGHREEALSRAEKSIS 702 (754)
Q Consensus 634 ~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-----------~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~ 702 (754)
+++|.++.+++++|.++.++|++++|+..|++|++++|++ +.++.++|.++..+|++++|...++++++
T Consensus 279 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 279 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 9999999999999999999999999999999999999999 89999999999999999999999998887
Q ss_pred c
Q 004426 703 I 703 (754)
Q Consensus 703 l 703 (754)
+
T Consensus 359 ~ 359 (368)
T 1fch_A 359 T 359 (368)
T ss_dssp H
T ss_pred H
Confidence 5
No 23
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.92 E-value=3.7e-25 Score=237.90 Aligned_cols=145 Identities=19% Similarity=0.253 Sum_probs=126.5
Q ss_pred ccCCCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhH
Q 004426 211 CLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGI 290 (754)
Q Consensus 211 ~~~~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~ 290 (754)
..+++..++|+|.|+|++|+|||.|||++|+||++||.++|.|+...+|+| +++++++|+.+|+|+|||++. ++.++
T Consensus 168 l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l--~~~~~~~f~~~L~~iYt~~~~-~~~~~ 244 (312)
T 3hqi_A 168 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP-NLDKM 244 (312)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEE--CSSCHHHHHHHHHHHHHSCCT-THHHH
T ss_pred HHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEe--cCCCHHHHHHHHHhhcCCCCC-ChHHH
Confidence 345566667999999999999999999999999999999999999999999 999999999999999999998 88899
Q ss_pred HHHHHHHhchhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCchh
Q 004426 291 VLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPK 359 (754)
Q Consensus 291 vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~e~ 359 (754)
+.+||.+|++|+++.|+..|+++|.+.++ .+||+.++.+|..|++..|++.|++||..|+.+++++++
T Consensus 245 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~-~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~g 312 (312)
T 3hqi_A 245 ADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 312 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999 899999999999999999999999999999999988763
No 24
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=4.6e-24 Score=215.89 Aligned_cols=179 Identities=15% Similarity=0.079 Sum_probs=135.7
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHc-----------CCHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAA-----------DDYE 565 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~l-----------gd~~ 565 (754)
++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+ |+++
T Consensus 22 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~ 101 (217)
T 2pl2_A 22 DAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLE 101 (217)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHH
Confidence 67777788888888888888888888888888888888888888888885 77788888888888 8888
Q ss_pred HHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHh
Q 004426 566 SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFR 645 (754)
Q Consensus 566 ~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~ 645 (754)
+|+..|+++++++|++ ..+...++.+....+++++| +..++++++++ .++.++++
T Consensus 102 ~A~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A------------------~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 102 QALSVLKDAERVNPRY------APLHLQRGLVYALLGERDKA------------------EASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHH------------------HHHHHHHHhcc-cchHHHHH
Confidence 8888888888888887 23334444444444444444 77888888888 88899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 646 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (754)
Q Consensus 646 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai 701 (754)
+|.++..+|++++|+..|++|++++|++++++.++|.++..+|++++|+..|+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988864
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=6.7e-23 Score=228.35 Aligned_cols=266 Identities=13% Similarity=0.008 Sum_probs=217.6
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhhcc-----------hhhhhhHHHHHHHhCCHHHHHHHHHHHHHcc------
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGH-----------IYSLAGLARAKYKVGQQYSAYKLINSIISEH------ 481 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~-----------~~a~~~larv~~~~G~~~~A~~~~~~aI~~~------ 481 (754)
+..++++|.++...|++++|+++|++|+++.+ ..++.++|.++..+|++++|...+.+++...
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 45678899999999999999999999998711 1346789999999999999999999998763
Q ss_pred --CCCHHHHHHhhh----cC--ChhhHHHHHHHHHhhCCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCC-HH
Q 004426 482 --KPTGWMYQERSL----YN--LGREKIVDLNYASELDPTLSFPYKYRAVAKME---EGQIRAAISEIDRIIVFKLS-VD 549 (754)
Q Consensus 482 --~~~g~ay~~r~~----y~--~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~---lg~~~eAl~~~~rAl~l~p~-~~ 549 (754)
+..+.++.+.|. .+ ..++|+..|++|++++|+++.++.++|.++.. .++.++|+..|++|++++|+ +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 234556655542 11 22899999999999999999999999998654 57889999999999999996 67
Q ss_pred HHHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccch
Q 004426 550 CLELRAWLFI----AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGS 625 (754)
Q Consensus 550 ~~~~ra~~~~----~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a 625 (754)
.+.+++..+. ..|++++|+..|+++++++|++. .+...++.+.....++++|
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~------~~~~~lg~~~~~~~~~~~A------------------ 266 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT------DVLRSAAKFYRRKDEPDKA------------------ 266 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCH------HHHHHHHHHHHHTTCHHHH------------------
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHH------HHHHHHHHHHHHcCchHHH------------------
Confidence 7777775544 45788999999999999999983 3344444444444444444
Q ss_pred HHHHHHHHHcCCCChhHHHhHHHHHHH-------------------cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 004426 626 LAVINQMLINDPGKSFLRFRQSLLLLR-------------------LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD 686 (754)
Q Consensus 626 l~~~~~aL~l~P~~~~~~~~~g~~L~~-------------------lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~ 686 (754)
+..++++++.+|.++.+++++|.++.. .+.+++|+..+++|++++|+++.+++++|.++..
T Consensus 267 ~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 267 IELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH
Confidence 889999999999999999999998754 3457889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCChH
Q 004426 687 TGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 687 ~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
+|++++|+..|++|++++|+..
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHH
T ss_pred hccHHHHHHHHHHHHhcCCCCh
Confidence 9999999999999999998865
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=9.4e-24 Score=221.45 Aligned_cols=262 Identities=10% Similarity=-0.012 Sum_probs=216.3
Q ss_pred HHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc---
Q 004426 420 LALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY--- 494 (754)
Q Consensus 420 ~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y--- 494 (754)
..++.+|..+...|++++|+..|+++++..+ ..++..+|.++...|++++|...+.+++...|+...++...+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 4567889999999999999999999998854 45677889999999999999999999999998877777666532
Q ss_pred -CChhhHHHHHHHHHhhCCCChHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHH
Q 004426 495 -NLGREKIVDLNYASELDPTLSFPYKYR--------------AV-AKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWL 557 (754)
Q Consensus 495 -~~g~eAl~dl~kAi~LdP~~~~ay~~r--------------g~-~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~ 557 (754)
+..++|+..|+++++.+|++...+..+ |. ++...|++++|+..++++++.+|+ +..+..+|.+
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 181 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVL 181 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 233889999999999999999888887 77 788899999999999999999995 7788889999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCC
Q 004426 558 FIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP 637 (754)
Q Consensus 558 ~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P 637 (754)
+...|++++|+..|+++++++|++. .+...++.+....+++++ |+..++++++.+|
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~------------------A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELRPDDA------QLWNKLGATLANGNRPQE------------------ALDAYNRALDINP 237 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHH------------------HHHHHHHHHHHCT
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHH------------------HHHHHHHHHHcCC
Confidence 9999999999999999999999873 233333333333344444 4788999999999
Q ss_pred CChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC------------chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS------------EHERLVYEGWILYDTGHREEALSRAEKSISIER 705 (754)
Q Consensus 638 ~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~------------~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~ 705 (754)
.++.+++++|.++..+|++++|+..++++++++|+ +..++.++|.++..+|++++|...+++++++-|
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999 899999999999999999999999998887654
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.3e-23 Score=208.18 Aligned_cols=226 Identities=14% Similarity=0.107 Sum_probs=189.7
Q ss_pred HHHHHhhhhhhHhhccchHHHHHHHHHHhhhc-chhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCC
Q 004426 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAG-HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 496 (754)
Q Consensus 418 ka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~-~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~ 496 (754)
.+.++..+|..+...|++++|+..|+++++.. ...++..+|.++...|++++|+.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~------------------------ 59 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAIS------------------------ 59 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHH------------------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHH------------------------
Confidence 45678889999999999999999999998875 33466777778887777755555
Q ss_pred hhhHHHHHHHHHhhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004426 497 GREKIVDLNYASELDPTL-------SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALR 569 (754)
Q Consensus 497 g~eAl~dl~kAi~LdP~~-------~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~ 569 (754)
.|+++++++|++ +.+|.++|.++..+|++++|+..|++++.++|+. .++..+|++++|+.
T Consensus 60 ------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 60 ------TLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELK 126 (258)
T ss_dssp ------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHH
T ss_pred ------HHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHH
Confidence 455555555554 6889999999999999999999999999999984 35667788999999
Q ss_pred HHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHH
Q 004426 570 DTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLL 649 (754)
Q Consensus 570 d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~ 649 (754)
.++++++.+|++ ..+...++.+....+++++| +..++++++.+|.++.+++++|.+
T Consensus 127 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A------------------~~~~~~a~~~~~~~~~~~~~l~~~ 182 (258)
T 3uq3_A 127 KAEAEAYVNPEK------AEEARLEGKEYFTKSDWPNA------------------VKAYTEMIKRAPEDARGYSNRAAA 182 (258)
T ss_dssp HHHHHHHCCHHH------HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCcch------HHHHHHHHHHHHHhcCHHHH------------------HHHHHHHHhcCcccHHHHHHHHHH
Confidence 999999999986 33344444444444444444 889999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (754)
Q Consensus 650 L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~ 704 (754)
+..+|++++|+..++++++++|++++++.++|.++..+|++++|+..|++++++.
T Consensus 183 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 183 LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.91 E-value=2.9e-23 Score=210.01 Aligned_cols=195 Identities=16% Similarity=0.067 Sum_probs=164.4
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhh
Q 004426 512 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG 590 (754)
Q Consensus 512 P~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~ 590 (754)
|.++.+++++|.++.+.|++++|+..|+++++++|+ +..++++|.++..+|++++|+..|+++++++|++.. +
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~------a 75 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG------G 75 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------H
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------H
Confidence 889999999999999999999999999999999996 899999999999999999999999999999999843 3
Q ss_pred hHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 591 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH 669 (754)
Q Consensus 591 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 669 (754)
...++.+.......... .+...+++. |+..++++++++|+++.+|+++|.++..+|++++|+..|++|+++
T Consensus 76 ~~~lg~~~~~~~~~~~~--------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAED--------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp HHHHHHHHHHHHHTCSS--------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhh--------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 33333333333000000 000002333 588999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhccC
Q 004426 670 SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILADTN 721 (754)
Q Consensus 670 ~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~~~ 721 (754)
+ +++++++++|.++..+|++++|+..|+++++++|++. +++..|.++....
T Consensus 148 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 148 E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG 199 (217)
T ss_dssp C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--
T ss_pred c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 9 9999999999999999999999999999999999988 8899998887654
No 29
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=1.2e-22 Score=213.27 Aligned_cols=275 Identities=11% Similarity=-0.013 Sum_probs=228.6
Q ss_pred chhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhC-CHHHHHHH
Q 004426 397 VSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVG-QQYSAYKL 473 (754)
Q Consensus 397 r~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G-~~~~A~~~ 473 (754)
+.+.+..++++++...+.. ..++..++.++...|++++|+..|+++++..+ ..++..+|.++...| ++++|+..
T Consensus 37 ~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 113 (330)
T 3hym_B 37 DFKMCYKLTSVVMEKDPFH---ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRY 113 (330)
T ss_dssp CHHHHHHHHHHHHHHCTTC---TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3667788888876554432 23556678888999999999999999999854 457888999999999 99999999
Q ss_pred HHHHHHccCCCHHHHHHhhh----cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-H
Q 004426 474 INSIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-V 548 (754)
Q Consensus 474 ~~~aI~~~~~~g~ay~~r~~----y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~ 548 (754)
+.+++...|+.+.++...+. .+..++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++++|+ +
T Consensus 114 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 193 (330)
T 3hym_B 114 LSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP 193 (330)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh
Confidence 99999999988777776653 234499999999999999999999999999999999999999999999999996 7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccc---ccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccch
Q 004426 549 DCLELRAWLFIAADDYESALRDTLALLALESNYMMF---HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGS 625 (754)
Q Consensus 549 ~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~---~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a 625 (754)
..+..+|.++..+|++++|+..|++++++.|....- .....+...++.+....+++++ |
T Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~------------------A 255 (330)
T 3hym_B 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE------------------A 255 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH------------------H
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH------------------H
Confidence 888999999999999999999999999998653211 0112233334333333334433 5
Q ss_pred HHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH-HHcCCHHH
Q 004426 626 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL-YDTGHREE 692 (754)
Q Consensus 626 l~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~l-y~~G~~ee 692 (754)
+..++++++++|.++.+++++|.++..+|++++|+..++++++++|++++++..+|+++ ..+|+.+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC---
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchhc
Confidence 88999999999999999999999999999999999999999999999999999999999 57777654
No 30
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.90 E-value=7e-23 Score=199.36 Aligned_cols=174 Identities=11% Similarity=0.103 Sum_probs=154.2
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhh
Q 004426 513 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (754)
Q Consensus 513 ~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~ 591 (754)
+.+..|+++|.++..+|++++|+..|++||+++|+ +..+..+|.++..+|++++|+..+++++..+|++. .+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 76 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA------EAY 76 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH------HHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH------HHH
Confidence 56788999999999999999999999999999995 88889999999999999999999999999999873 333
Q ss_pred HHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (754)
Q Consensus 592 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 671 (754)
...+.......+++.| ...+.+++.++|.++.+++.+|.++.++|++++|+..|+++++++|
T Consensus 77 ~~~~~~~~~~~~~~~a------------------~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 77 YILGSANFMIDEKQAA------------------IDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence 4444343444444444 7789999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 004426 672 SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAF 710 (754)
Q Consensus 672 ~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~ 710 (754)
+++++++++|.++..+|++++|+..|++|++++|+.+-|
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~ 177 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY 177 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHHH
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHHH
Confidence 999999999999999999999999999999999987654
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=5.3e-22 Score=208.10 Aligned_cols=246 Identities=13% Similarity=0.065 Sum_probs=210.6
Q ss_pred hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhh----cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 004426 452 YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKME 527 (754)
Q Consensus 452 ~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~----y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~ 527 (754)
..+..+|..+...|++++|...+.+++...|+...++...+. .+..++|+..|+++++++|+++.++..+|.++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 346678899999999999999999999999988777776653 2334899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCC-HHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhcCCCccccccchhhh
Q 004426 528 EGQIRAAISEIDRIIVFKLS-VDCLELR--------------AW-LFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (754)
Q Consensus 528 lg~~~eAl~~~~rAl~l~p~-~~~~~~r--------------a~-~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~ 591 (754)
+|++++|+..|+++++.+|+ ...+..+ +. ++...|++++|+..|+++++++|++ ..+.
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~ 175 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND------AQLH 175 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTC------HHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC------HHHH
Confidence 99999999999999999996 4444444 54 6889999999999999999999986 3334
Q ss_pred HHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (754)
Q Consensus 592 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 671 (754)
..++.+....+++++ |+..++++++.+|.++.+++++|.++..+|++++|+..++++++.+|
T Consensus 176 ~~la~~~~~~~~~~~------------------A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDS------------------AAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHHHHHTTCHHH------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhccHHH------------------HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 444434334444444 48899999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------hH-HHHHHHHHhhccC
Q 004426 672 SEHERLVYEGWILYDTGHREEALSRAEKSISIERT------------FE-AFFLKAYILADTN 721 (754)
Q Consensus 672 ~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~------------~~-a~~~~~~~~~~~~ 721 (754)
++.++++++|.+++.+|++++|+..|++++.+.|+ .. +++..|.++....
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999 44 8888888887654
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=3.4e-22 Score=215.30 Aligned_cols=223 Identities=12% Similarity=0.067 Sum_probs=184.8
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 161 (365)
T 4eqf_A 82 PVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK 161 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 67777888899999999999999999999999999999999999999996 88899999999999999999999999999
Q ss_pred cCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCC--ChhHHHhHHHHHHHc
Q 004426 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPG--KSFLRFRQSLLLLRL 653 (754)
Q Consensus 577 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~--~~~~~~~~g~~L~~l 653 (754)
++|++........ ..+..+..+...+...+++. |+..++++++++|. ++.+++++|.++..+
T Consensus 162 ~~p~~~~~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 162 QNPKYKYLVKNKK---------------GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp HCHHHHCC----------------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred hCccchHHHhhhc---------------cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 9998754222110 01111222233333344454 68899999999999 999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhccCCCCCchhHHHH
Q 004426 654 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILADTNLDPESSTYVIQ 732 (754)
Q Consensus 654 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~ 732 (754)
|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+.. +++..|.++....- -...+.
T Consensus 227 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----~~~A~~ 302 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA----YREAVS 302 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC----CHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC----HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999976 99999998877652 334556
Q ss_pred HHHHHhc
Q 004426 733 LLEEALR 739 (754)
Q Consensus 733 ~~~~~~~ 739 (754)
.++.|++
T Consensus 303 ~~~~al~ 309 (365)
T 4eqf_A 303 NFLTALS 309 (365)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666664
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.89 E-value=4.2e-22 Score=211.47 Aligned_cols=249 Identities=14% Similarity=0.091 Sum_probs=204.0
Q ss_pred HhhccchHHHHHHHHHHhhhcch---hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc----CChhhHH
Q 004426 429 MFEREEYKDACYYFEAAADAGHI---YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKI 501 (754)
Q Consensus 429 ~~~~g~~~eA~~~f~~AL~~~~~---~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y----~~g~eAl 501 (754)
.+..|+|++|+..+++.....+. .+...+++++..+|+++.|+..+... .++...++...+.+ +..++|+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 45678999999988876665443 35567899999999999998877552 34333444333322 2238899
Q ss_pred HHHHHHHhh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 502 VDLNYASEL--DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALE 578 (754)
Q Consensus 502 ~dl~kAi~L--dP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~ 578 (754)
..|+++++. +|+++.+++.+|.++...|++++|+..|++ | +++.+..++.++..+|++++|+..|+++++++
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 999998875 699999999999999999999999999999 6 58888999999999999999999999999999
Q ss_pred CCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHH
Q 004426 579 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 657 (754)
Q Consensus 579 P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~e 657 (754)
|++.. . .+ +.+|..++.. .+++. |+..|+++++.+|.++.+++++|.++.++|+++
T Consensus 161 p~~~~------~-~l-------------~~a~~~l~~~---~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 161 EDATL------T-QL-------------ATAWVSLAAG---GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWE 217 (291)
T ss_dssp TTCHH------H-HH-------------HHHHHHHHHC---TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCcHH------H-HH-------------HHHHHHHHhC---chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Confidence 98621 0 10 1223333221 13333 688999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCChH
Q 004426 658 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEA-LSRAEKSISIERTFE 708 (754)
Q Consensus 658 eAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeA-l~~~e~Ai~l~~~~~ 708 (754)
+|+..+++|++++|+++++++++|.++..+|+.+++ ...++++++++|+..
T Consensus 218 eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 218 AAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999999999999999999875 578899999999987
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.89 E-value=2.8e-22 Score=205.92 Aligned_cols=235 Identities=12% Similarity=0.046 Sum_probs=177.6
Q ss_pred HHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChh
Q 004426 421 ALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR 498 (754)
Q Consensus 421 Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~ 498 (754)
.++.+|..+...|++++|+..|+++++..+ ..++..+|.++...|++++|+..+.+++. .++
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~--------------- 68 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVN--------------- 68 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSC---------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccC---------------
Confidence 456788888899999999999999988854 34677788888888888766666555555 211
Q ss_pred hHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 499 EKIVDLNYASELDPT-LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 499 eAl~dl~kAi~LdP~-~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
+|. .+.+|.++|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++
T Consensus 69 ------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 69 ------------ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp ------------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred ------------chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 111 2455788888888888888888888888888885 67777888888888888888888888888
Q ss_pred cCCCccccccchhhhHHHH-HHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCC
Q 004426 577 LESNYMMFHGRVSGDHLVK-LLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNC 655 (754)
Q Consensus 577 l~P~~~~~~~~~~~~~~~~-~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~ 655 (754)
++|++.. +...++ .+.. ..++++ |+..++++++++|.++.+++++|.++..+|+
T Consensus 137 ~~~~~~~------~~~~l~~~~~~-~~~~~~------------------A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 137 PTTTDPK------VFYELGQAYYY-NKEYVK------------------ADSSFVKVLELKPNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp SSCCCHH------HHHHHHHHHHH-TTCHHH------------------HHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred cCCCcHH------HHHHHHHHHHH-HHHHHH------------------HHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence 8887633 222222 1111 112333 4778888888888888889999999999888
Q ss_pred ---HHHHHHHHHHHHhcC---CCc-----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 656 ---QKAAMRCLRLARNHS---SSE-----HERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 656 ---~eeAl~~~~~Al~l~---P~~-----~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
+++|+..|++++++. |+. .+++.++|.+++.+|++++|+..|+++++++|+.+
T Consensus 192 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 192 DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255 (272)
T ss_dssp TCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred chhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHH
Confidence 888999999999887 552 36888899999999999999999999999999877
No 35
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.89 E-value=2.6e-24 Score=204.78 Aligned_cols=127 Identities=20% Similarity=0.285 Sum_probs=94.5
Q ss_pred ccCCCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhH
Q 004426 211 CLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGI 290 (754)
Q Consensus 211 ~~~~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~ 290 (754)
..+++..++|+|.|+|++|+|||.||+++|+||++||+++|.|+...+|++ +++++++|+.+|+|+|||++. ++.++
T Consensus 19 l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l--~~~~~~~~~~~l~~~Y~~~~~-~~~~~ 95 (145)
T 4eoz_A 19 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP-NLDKM 95 (145)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEE--CSSCHHHHHHHHHHHHHSCCT-TGGGT
T ss_pred HHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEe--cCCCHHHHHHHHHhhccCccC-CcHHH
Confidence 345566667999999999999999999999999999999999998899999 899999999999999999999 89999
Q ss_pred HHHHHHHhchhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhhchHHHHH
Q 004426 291 VLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVA 341 (754)
Q Consensus 291 vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~~~n~l~il~~A~~~~~~~L~~ 341 (754)
+.+++.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|++.+|++
T Consensus 96 ~~~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~l~~A~~~~~~~Lk~ 145 (145)
T 4eoz_A 96 ADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKT 145 (145)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCC----------------------------
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCHHHhcC
Confidence 99999999999999999999999999999 899999999999999998864
No 36
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.87 E-value=3.9e-22 Score=237.30 Aligned_cols=174 Identities=13% Similarity=0.017 Sum_probs=156.8
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccch
Q 004426 510 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 588 (754)
Q Consensus 510 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~ 588 (754)
-.|+++++|+++|.++.++|++++|+..|++||+++|+ +.+++++|.+|..+|++++|+..|++|++++|++ .
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~------~ 77 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------A 77 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------H
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Confidence 46999999999999999999999999999999999996 8889999999999999999999999999999998 3
Q ss_pred hhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (754)
Q Consensus 589 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 668 (754)
.+...++.+....+++++| +..|++||+++|+++++|+++|.++..+|++++|+..|++|++
T Consensus 78 ~a~~nLg~~l~~~g~~~~A------------------~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGA------------------LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444455444 8899999999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004426 669 HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (754)
Q Consensus 669 l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~ 707 (754)
++|++++++.++|.++..+|++++|.+.|++++++.|+.
T Consensus 140 l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 140 LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 999999999999999999999999999999999997764
No 37
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.87 E-value=1.6e-21 Score=212.91 Aligned_cols=291 Identities=10% Similarity=0.003 Sum_probs=233.7
Q ss_pred HHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcch------hhhhhHHHHHHHhCCHHHHHHHHHHHHHc------cCCC
Q 004426 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI------YSLAGLARAKYKVGQQYSAYKLINSIISE------HKPT 484 (754)
Q Consensus 417 qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~------~a~~~larv~~~~G~~~~A~~~~~~aI~~------~~~~ 484 (754)
.....++.+|..+...|++++|+..|++++++.+. .++..+|.++...|++++|+..+.+++.. .+..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 34567788999999999999999999999998543 46788999999999999999999999887 3444
Q ss_pred HHHHHHhhh----cCChhhHHHHHHHHHhh------CCCChHHHHHHHHHHHHcCC-----------------HHHHHHH
Q 004426 485 GWMYQERSL----YNLGREKIVDLNYASEL------DPTLSFPYKYRAVAKMEEGQ-----------------IRAAISE 537 (754)
Q Consensus 485 g~ay~~r~~----y~~g~eAl~dl~kAi~L------dP~~~~ay~~rg~~l~~lg~-----------------~~eAl~~ 537 (754)
+.++...+. .+..++|+..|++|+++ +|..+.+|.++|.++..+|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 445544442 12339999999999999 78889999999999999999 9999999
Q ss_pred HHHHHHcCC---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhh
Q 004426 538 IDRIIVFKL---S----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCW 610 (754)
Q Consensus 538 ~~rAl~l~p---~----~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~ 610 (754)
|++++++.+ + ...+.++|.++..+|++++|+..|++++++.|++........+...++.+.....++++
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---- 281 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED---- 281 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH----
Confidence 999998743 1 34677899999999999999999999999998753222222234444444333344333
Q ss_pred hhhhhccccccccchHHHHHHHHHcCCCC------hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc------hhHHH
Q 004426 611 IKLYDRWSSVDDIGSLAVINQMLINDPGK------SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE------HERLV 678 (754)
Q Consensus 611 ~~l~~~~~~~~d~~al~~~~~aL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~ 678 (754)
|+..+++++++.|.. +.+++++|.++..+|++++|+..+++|+++.++. +.++.
T Consensus 282 --------------A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 347 (411)
T 4a1s_A 282 --------------AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACW 347 (411)
T ss_dssp --------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 588999999998865 7889999999999999999999999999997665 45999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhccCCCCC
Q 004426 679 YEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPE 725 (754)
Q Consensus 679 ~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~~~~~~~ 725 (754)
++|.++..+|++++|+..|++|+++.+....-...+-...+++.+.+
T Consensus 348 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 394 (411)
T 4a1s_A 348 SLGNAHSAIGGHERALKYAEQHLQLAXXXXXXXXXXXXXXXXXXXXX 394 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence 99999999999999999999999999998876666666666554433
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.86 E-value=5.3e-21 Score=196.00 Aligned_cols=246 Identities=11% Similarity=0.024 Sum_probs=160.8
Q ss_pred hhhhhHhhccchHHHHHHHHHHhhhc------chhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc---
Q 004426 424 QLGCVMFEREEYKDACYYFEAAADAG------HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY--- 494 (754)
Q Consensus 424 ~LG~v~~~~g~~~eA~~~f~~AL~~~------~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y--- 494 (754)
.++......|++++|+..|+++++.. ...++..+|.++...|++++|...+.+++...|+...++...+..
T Consensus 10 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 10 VLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp GSCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred ceeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 45556667799999999999999862 245677888999999998888887777777777766665555431
Q ss_pred -CChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 495 -NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLA 573 (754)
Q Consensus 495 -~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~ 573 (754)
+..++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+.........+....|++++|+..|++
T Consensus 90 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2337777777777777777777777777777777777777777777777777533233333344566777777777777
Q ss_pred HHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCC----hhHHHhHHHH
Q 004426 574 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK----SFLRFRQSLL 649 (754)
Q Consensus 574 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~----~~~~~~~g~~ 649 (754)
++...|++.... .... + .+...+..+|+..+.+++..+|.. +.+++++|.+
T Consensus 170 ~~~~~~~~~~~~------~~~~-~------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 224 (275)
T 1xnf_A 170 HFEKSDKEQWGW------NIVE-F------------------YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY 224 (275)
T ss_dssp HHHHSCCCSTHH------HHHH-H------------------HTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcchHHH------HHHH-H------------------HHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHH
Confidence 777777652211 1100 0 000111112456666666666533 6777777777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q 004426 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRA 697 (754)
Q Consensus 650 L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~ 697 (754)
+..+|++++|+..|++|++++|++... .|.++..+|++++|++.|
T Consensus 225 ~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 225 YLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 777777777777777777777766433 366777777777777666
No 39
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.86 E-value=7.2e-22 Score=178.94 Aligned_cols=102 Identities=25% Similarity=0.325 Sum_probs=90.0
Q ss_pred CCCCCCcEEEEECC----eEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCCh
Q 004426 213 SLEEDDSVTFCVRD----KEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCP 288 (754)
Q Consensus 213 ~~~~~~~V~f~V~g----~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~ 288 (754)
+++..++|+|+|+| ++|+|||.||+++|+||++||+++|.|+. .+|+| +++++++|+.+|+|+|||++. ++.
T Consensus 4 ~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l--~~~~~~~f~~~l~~iYt~~~~-~~~ 79 (109)
T 2vkp_A 4 NNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHI--PDVEPAAFLILLKYMYSDEID-LEA 79 (109)
T ss_dssp TCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEE--TTSCHHHHHHHHHHHHHCCCC-CCT
T ss_pred cCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEe--CCCCHHHHHHHHHHHcCCCcc-CCH
Confidence 44555669999998 89999999999999999999999999998 89999 999999999999999999999 899
Q ss_pred hHHHHHHHHhchhChhhHHHHHHHHHHhhc
Q 004426 289 GIVLELLSFANRFCCEEMKSACDAHLASLV 318 (754)
Q Consensus 289 ~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i 318 (754)
+++.+++.+|++|+++.|+..|+++|.+.+
T Consensus 80 ~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 80 DTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 999999999999999999999999998764
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.86 E-value=5.3e-20 Score=190.63 Aligned_cols=234 Identities=15% Similarity=0.089 Sum_probs=188.4
Q ss_pred HHHHHhhhhhhHhhccchHHHHHHHHHHhhhcchhhhhhHHHHHHH----hCCHHHHHHHHHHHHHccCCCHHHHHHhhh
Q 004426 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYK----VGQQYSAYKLINSIISEHKPTGWMYQERSL 493 (754)
Q Consensus 418 ka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~----~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~ 493 (754)
...+++.+|..+...|++++|+.+|++|++.++..++..+|.++.. .|++++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~------------------------ 60 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKK------------------------ 60 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH------------------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHH------------------------
Confidence 3567889999999999999999999999998888888888888887 776654
Q ss_pred cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHH
Q 004426 494 YNLGREKIVDLNYASELDPTLSFPYKYRAVAKME----EGQIRAAISEIDRIIVFKLSVDCLELRAWLFIA----ADDYE 565 (754)
Q Consensus 494 y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~----lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~----lgd~~ 565 (754)
|+..|++|++++ ++.+++++|.++.. .+++++|+..|++|++.+ ++..++++|.++.. .|+++
T Consensus 61 ------A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 61 ------AASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp ------HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ------HHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHH
Confidence 445555555554 67788888888888 888888888888888764 57777888888888 88888
Q ss_pred HHHHHHHHHHhcCCCccccccchhhhHHHHHHhhh----hccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChh
Q 004426 566 SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH----VRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF 641 (754)
Q Consensus 566 ~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~----~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~ 641 (754)
+|+..|++++++++.. +...++.+... ..++++ |+..++++++. +++.
T Consensus 132 ~A~~~~~~a~~~~~~~--------a~~~lg~~~~~~~~~~~~~~~------------------A~~~~~~a~~~--~~~~ 183 (273)
T 1ouv_A 132 KAVEYFTKACDLNDGD--------GCTILGSLYDAGRGTPKDLKK------------------ALASYDKACDL--KDSP 183 (273)
T ss_dssp HHHHHHHHHHHTTCHH--------HHHHHHHHHHHTSSSCCCHHH------------------HHHHHHHHHHT--TCHH
T ss_pred HHHHHHHHHHhcCcHH--------HHHHHHHHHHcCCCCCCCHHH------------------HHHHHHHHHHC--CCHH
Confidence 8888888888876422 23333322222 222222 47788888877 4678
Q ss_pred HHHhHHHHHHH----cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChHHHHHH
Q 004426 642 LRFRQSLLLLR----LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD----TGHREEALSRAEKSISIERTFEAFFLK 713 (754)
Q Consensus 642 ~~~~~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~----~G~~eeAl~~~e~Ai~l~~~~~a~~~~ 713 (754)
+++++|.++.. .+++++|+..|++|++..| +++++++|.++.. .|++++|+..|++|+++.|+...+.+.
T Consensus 184 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 261 (273)
T 1ouv_A 184 GCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILK 261 (273)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999 9999999999999999976 8999999999999 999999999999999999998877765
Q ss_pred H
Q 004426 714 A 714 (754)
Q Consensus 714 ~ 714 (754)
-
T Consensus 262 ~ 262 (273)
T 1ouv_A 262 Q 262 (273)
T ss_dssp T
T ss_pred H
Confidence 3
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3e-20 Score=187.84 Aligned_cols=205 Identities=16% Similarity=0.090 Sum_probs=178.7
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------HHHHHHHHHHHHHcCCHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS--------VDCLELRAWLFIAADDYESALR 569 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~--------~~~~~~ra~~~~~lgd~~~Al~ 569 (754)
++|+..|+++++++ +++.+|.++|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+.
T Consensus 22 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 100 (258)
T 3uq3_A 22 DEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIE 100 (258)
T ss_dssp HHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 77788888899999 88999999999999999999999999999999884 4677889999999999999999
Q ss_pred HHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHH
Q 004426 570 DTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLL 649 (754)
Q Consensus 570 d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~ 649 (754)
.|+++++++|+. . +.....++++ |+..+++++..+|.++.+++++|.+
T Consensus 101 ~~~~a~~~~~~~-------~-------~~~~~~~~~~------------------a~~~~~~~~~~~~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 101 YYQKSLTEHRTA-------D-------ILTKLRNAEK------------------ELKKAEAEAYVNPEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHCCCH-------H-------HHHHHHHHHH------------------HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCchh-------H-------HHHHHhHHHH------------------HHHHHHHHHHcCcchHHHHHHHHHH
Confidence 999999999972 1 1111222222 4789999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhccCCCCCchh
Q 004426 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILADTNLDPESST 728 (754)
Q Consensus 650 L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~~~~~~~~~~ 728 (754)
+..+|++++|+..++++++++|+++.++.++|.+++.+|++++|+..++++++++|++. +++.+|.++.... .-.
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g----~~~ 224 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK----EYA 224 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----CHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh----hHH
Confidence 99999999999999999999999999999999999999999999999999999999976 8999999887764 234
Q ss_pred HHHHHHHHHhc
Q 004426 729 YVIQLLEEALR 739 (754)
Q Consensus 729 ~~~~~~~~~~~ 739 (754)
.-++.++.|++
T Consensus 225 ~A~~~~~~a~~ 235 (258)
T 3uq3_A 225 SALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45556666654
No 42
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.86 E-value=3.1e-21 Score=208.57 Aligned_cols=285 Identities=11% Similarity=0.011 Sum_probs=218.4
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhhcch------hhhhhHHHHHHHhCCHHHHHHHHHHHHHcc------CCCHH
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHI------YSLAGLARAKYKVGQQYSAYKLINSIISEH------KPTGW 486 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~------~a~~~larv~~~~G~~~~A~~~~~~aI~~~------~~~g~ 486 (754)
..++..+|..+...|++++|+..|++++++.+. .++..+|.++...|++++|...+.+++... +..+.
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 456778888888889999999999988888432 356778888888999988988888887652 22344
Q ss_pred HHHHhhh----cCChhhHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCC--------------------HHHHHH
Q 004426 487 MYQERSL----YNLGREKIVDLNYASELDPTL------SFPYKYRAVAKMEEGQ--------------------IRAAIS 536 (754)
Q Consensus 487 ay~~r~~----y~~g~eAl~dl~kAi~LdP~~------~~ay~~rg~~l~~lg~--------------------~~eAl~ 536 (754)
++...+. .+..++|+..|++|+++.|.. +.++.++|.++..+|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4444432 123388888899998887765 4589999999999999 999999
Q ss_pred HHHHHHHcC------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhh
Q 004426 537 EIDRIIVFK------LS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADC 609 (754)
Q Consensus 537 ~~~rAl~l~------p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~ 609 (754)
.|++++.+. |. ...+.++|.++..+|++++|+..|++++++.|+...-.....+...++.+....+++++
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--- 245 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET--- 245 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH---
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH---
Confidence 999999872 22 34567788999999999999999999999888653222222233434333333333333
Q ss_pred hhhhhhccccccccchHHHHHHHHHcCCCC------hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc------hhHH
Q 004426 610 WIKLYDRWSSVDDIGSLAVINQMLINDPGK------SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE------HERL 677 (754)
Q Consensus 610 ~~~l~~~~~~~~d~~al~~~~~aL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~ 677 (754)
|+..+++++++.|.. +.+++++|.++..+|++++|+..+++|+++.+.. +.++
T Consensus 246 ---------------A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 310 (406)
T 3sf4_A 246 ---------------ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC 310 (406)
T ss_dssp ---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 478899999888877 7899999999999999999999999999997665 6799
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHhhccC
Q 004426 678 VYEGWILYDTGHREEALSRAEKSISIERTF-------EAFFLKAYILADTN 721 (754)
Q Consensus 678 ~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~-------~a~~~~~~~~~~~~ 721 (754)
.++|.++..+|++++|+..|++|+++.+.. .+++..|.++...+
T Consensus 311 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 311 WSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 999999999999999999999999984433 26777776664444
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.86 E-value=1.2e-20 Score=189.82 Aligned_cols=204 Identities=14% Similarity=0.073 Sum_probs=168.9
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCC
Q 004426 485 GWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADD 563 (754)
Q Consensus 485 g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd 563 (754)
|..+...+.+ ++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+ ...+..++.++..+|+
T Consensus 30 a~~~~~~~~~---~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 30 MGRGSEFGDY---EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp ---------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhCH---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc
Confidence 4444444444 78888899999999999999999999999999999999999999999995 7888889999999999
Q ss_pred HHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHH
Q 004426 564 YESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR 643 (754)
Q Consensus 564 ~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~ 643 (754)
+++|+..|+++++++|++. .+...++.+....+++++ |+..++++++.+|.++.++
T Consensus 107 ~~~A~~~~~~~~~~~~~~~------~~~~~~a~~~~~~~~~~~------------------A~~~~~~~~~~~~~~~~~~ 162 (243)
T 2q7f_A 107 YKEAKDMFEKALRAGMENG------DLFYMLGTVLVKLEQPKL------------------ALPYLQRAVELNENDTEAR 162 (243)
T ss_dssp HHHHHHHHHHHHHHTCCSH------HHHHHHHHHHHHTSCHHH------------------HHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhccHHH------------------HHHHHHHHHHhCCccHHHH
Confidence 9999999999999999873 233333333333344444 4888999999999999999
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHH
Q 004426 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAY 715 (754)
Q Consensus 644 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~ 715 (754)
+++|.++..+|++++|+..++++++.+|+++.++.++|.+++.+|++++|+..|++++++.|++. +++..+.
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 163 FQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988 6666554
No 44
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.86 E-value=7.8e-21 Score=215.43 Aligned_cols=210 Identities=11% Similarity=0.003 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHccCCCHHHHHHhhh----cCCh-hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 467 QYSAYKLINSIISEHKPTGWMYQERSL----YNLG-REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRI 541 (754)
Q Consensus 467 ~~~A~~~~~~aI~~~~~~g~ay~~r~~----y~~g-~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rA 541 (754)
.+.++..+.+.....+..+.++..+|. .+.. ++|+..|++|++++|+++.+|+++|.++..+|++++|+..|++|
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445556666666666777777776653 2455 88999999999999999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhh--------ccc
Q 004426 542 IVFKLSVDCLELRAWLFIAA---------DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV--------RSW 604 (754)
Q Consensus 542 l~l~p~~~~~~~ra~~~~~l---------gd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~--------~~~ 604 (754)
++++|++..+.++|.++..+ |++++|+..|+++++++|++.. +...++.+.... +++
T Consensus 164 l~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 164 LTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR------SWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHHHhhccccchH
Confidence 99999988888999999999 9999999999999999999843 333333333333 333
Q ss_pred cchhhhhhhhhccccccccchHHHHHHHHHcCC---CChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q 004426 605 SPADCWIKLYDRWSSVDDIGSLAVINQMLINDP---GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEG 681 (754)
Q Consensus 605 ~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P---~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G 681 (754)
++ |+..|+++++++| .++.+|+++|.++..+|++++|+..|++|++++|++++++.++|
T Consensus 238 ~~------------------A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 299 (474)
T 4abn_A 238 QQ------------------ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQ 299 (474)
T ss_dssp HH------------------HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HH------------------HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 33 5889999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 004426 682 WILYDTGHREEALSRAEKS 700 (754)
Q Consensus 682 ~~ly~~G~~eeAl~~~e~A 700 (754)
.++..+|++++|+..|++.
T Consensus 300 ~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 300 QLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 9999999999999988765
No 45
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.85 E-value=8.5e-21 Score=197.96 Aligned_cols=271 Identities=11% Similarity=0.024 Sum_probs=205.8
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhhcch------hhhhhHHHHHHHhCCHHHHHHHHHHHHHcc------CCCHH
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHI------YSLAGLARAKYKVGQQYSAYKLINSIISEH------KPTGW 486 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~------~a~~~larv~~~~G~~~~A~~~~~~aI~~~------~~~g~ 486 (754)
...++..|..+...|++++|+..|+++++..+. .++..+|.++...|++++|...+.+++... +..+.
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345667788888888898898888888887432 356678888888888888888888887652 22333
Q ss_pred HHHHhhh----cCChhhHHHHHHHHHhhCCCCh------HHHHHHHHHHHHcCC--------------------HHHHHH
Q 004426 487 MYQERSL----YNLGREKIVDLNYASELDPTLS------FPYKYRAVAKMEEGQ--------------------IRAAIS 536 (754)
Q Consensus 487 ay~~r~~----y~~g~eAl~dl~kAi~LdP~~~------~ay~~rg~~l~~lg~--------------------~~eAl~ 536 (754)
++...+. .+..++|+..|.+++++.|... .++.++|.++..+|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 3333332 1233888888999888877664 489999999999999 999999
Q ss_pred HHHHHHHcCC------C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhh
Q 004426 537 EIDRIIVFKL------S-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADC 609 (754)
Q Consensus 537 ~~~rAl~l~p------~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~ 609 (754)
.+++++.+.+ . ...+..+|.++..+|++++|+..|++++++.|+...-.....+....+.+....+++++
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--- 241 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET--- 241 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH---
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH---
Confidence 9999988722 1 34567788999999999999999999999887642212222233333333333334333
Q ss_pred hhhhhhccccccccchHHHHHHHHHcCCCC------hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc------hhHH
Q 004426 610 WIKLYDRWSSVDDIGSLAVINQMLINDPGK------SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE------HERL 677 (754)
Q Consensus 610 ~~~l~~~~~~~~d~~al~~~~~aL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~ 677 (754)
|+..+++++++.|.. +.+++++|.++..+|++++|+..+++|+++.|.. ..++
T Consensus 242 ---------------A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 306 (338)
T 3ro2_A 242 ---------------ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 306 (338)
T ss_dssp ---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 477889999888776 7889999999999999999999999999998766 4489
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004426 678 VYEGWILYDTGHREEALSRAEKSISIERTF 707 (754)
Q Consensus 678 ~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~ 707 (754)
..+|.++..+|++++|+..|++|+++.++.
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 307 WSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998764
No 46
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.85 E-value=1.7e-21 Score=179.83 Aligned_cols=101 Identities=23% Similarity=0.232 Sum_probs=90.8
Q ss_pred ccCCCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhH
Q 004426 211 CLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGI 290 (754)
Q Consensus 211 ~~~~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~ 290 (754)
..+++..++|+|.|+|++|+|||.||+++|+||++||+++|.|+...+|++ +++++++|+.+|+|+|||++. ++.++
T Consensus 19 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l--~~~~~~~f~~ll~~~Yt~~~~-~~~~~ 95 (120)
T 2if5_A 19 QRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEI--DFVSAEALTALMDFAYTATLT-VSTAN 95 (120)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEEC--CSSCHHHHHHHHHHHHHSCCC-CCGGG
T ss_pred HHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEe--CCCCHHHHHHHHHHHcCCCCc-cCHHH
Confidence 345566667999999999999999999999999999999999999999999 899999999999999999999 99999
Q ss_pred HHHHHHHhchhChhhHHHHHHHHH
Q 004426 291 VLELLSFANRFCCEEMKSACDAHL 314 (754)
Q Consensus 291 vlelL~aA~~f~l~~Lk~~Ce~~L 314 (754)
+.+++.+|++|+++.|+..|+++|
T Consensus 96 ~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 96 VGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHh
Confidence 999999999999999999999987
No 47
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.85 E-value=2e-20 Score=212.14 Aligned_cols=197 Identities=10% Similarity=0.005 Sum_probs=177.4
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQI-RAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALL 575 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~-~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al 575 (754)
++++..++++...+|+.+.+|+.+|.++..+|++ ++|+..|++|++++|+ +..++.+|.++..+|++++|+..|++++
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7788889999999999999999999999999999 9999999999999996 8999999999999999999999999999
Q ss_pred hcCCCccccccchhhhHHHHHHhhhh---------ccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhH
Q 004426 576 ALESNYMMFHGRVSGDHLVKLLNHHV---------RSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQ 646 (754)
Q Consensus 576 ~l~P~~~~~~~~~~~~~~~~~l~~~~---------~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~ 646 (754)
+++|+. .+...++.+.... +++++ |+..++++++++|.++.+|+++
T Consensus 165 ~~~p~~-------~~~~~lg~~~~~~~~~~~~~~~g~~~~------------------A~~~~~~al~~~p~~~~~~~~l 219 (474)
T 4abn_A 165 THCKNK-------VSLQNLSMVLRQLQTDSGDEHSRHVMD------------------SVRQAKLAVQMDVLDGRSWYIL 219 (474)
T ss_dssp TTCCCH-------HHHHHHHHHHTTCCCSCHHHHHHHHHH------------------HHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhCCCH-------HHHHHHHHHHHHhccCChhhhhhhHHH------------------HHHHHHHHHHhCCCCHHHHHHH
Confidence 999983 2333333333333 33333 5889999999999999999999
Q ss_pred HHHHHHc--------CCHHHHHHHHHHHHhcCC---CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHH
Q 004426 647 SLLLLRL--------NCQKAAMRCLRLARNHSS---SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKA 714 (754)
Q Consensus 647 g~~L~~l--------g~~eeAl~~~~~Al~l~P---~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~ 714 (754)
|.++..+ |++++|+..|++|++++| +++++++++|.+++.+|++++|+..|++|++++|++. +++..|
T Consensus 220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 299 (474)
T 4abn_A 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999 999999999999999999 9999999999999999999999999999999999998 788888
Q ss_pred HHhhc
Q 004426 715 YILAD 719 (754)
Q Consensus 715 ~~~~~ 719 (754)
.++..
T Consensus 300 ~~~~~ 304 (474)
T 4abn_A 300 QLLEF 304 (474)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 48
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.84 E-value=7.4e-20 Score=184.37 Aligned_cols=177 Identities=10% Similarity=0.053 Sum_probs=137.6
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchh
Q 004426 512 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (754)
Q Consensus 512 P~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p--~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~ 589 (754)
|.++.+|+++|.++..+|++++|+..|+++++++| +...++++|.++..+|++++|+..|+++++++|++ ..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~ 77 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL------AN 77 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH------HH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch------HH
Confidence 45567777777777777777777777777777775 36666677777777777777777777777777775 23
Q ss_pred hhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCCh-------hHHHhHHHHHHHcCCHHHHHHH
Q 004426 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS-------FLRFRQSLLLLRLNCQKAAMRC 662 (754)
Q Consensus 590 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~-------~~~~~~g~~L~~lg~~eeAl~~ 662 (754)
+...++.+....+++++| +..++++++++|.++ .+|+++|.++..+|++++|+..
T Consensus 78 ~~~~l~~~~~~~~~~~~A------------------~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 139 (228)
T 4i17_A 78 AYIGKSAAYRDMKNNQEY------------------IATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEEN 139 (228)
T ss_dssp HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHH------------------HHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHH
Confidence 333333333333333333 677777777777777 6699999999999999999999
Q ss_pred HHHHHhcCCC--chhHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHhcCCChH-HHHH
Q 004426 663 LRLARNHSSS--EHERLVYEGWILYDTGHR---------------------------EEALSRAEKSISIERTFE-AFFL 712 (754)
Q Consensus 663 ~~~Al~l~P~--~~ea~~~~G~~ly~~G~~---------------------------eeAl~~~e~Ai~l~~~~~-a~~~ 712 (754)
|++|++++|+ ++++++++|.+++.+|+. ++|+..|++|++++|+.. +..+
T Consensus 140 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 219 (228)
T 4i17_A 140 YKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQM 219 (228)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 9999999999 999999999999999998 999999999999999987 4433
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.84 E-value=7.6e-20 Score=183.81 Aligned_cols=218 Identities=13% Similarity=0.066 Sum_probs=160.4
Q ss_pred HHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcC
Q 004426 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN 495 (754)
Q Consensus 418 ka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~ 495 (754)
.+.+++.+|..+...|++++|+..|+++++..+ ..++..+|.++...|++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~---------------------------- 73 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNEL---------------------------- 73 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCH----------------------------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH----------------------------
Confidence 346788899999999999999999999998854 34566677777777766
Q ss_pred ChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 496 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLAL 574 (754)
Q Consensus 496 ~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~a 574 (754)
++|+..|+++++++|++..++..+|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++
T Consensus 74 --~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 74 --ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp --HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 56666777888888889999999999999999999999999999999995 788888999999999999999999999
Q ss_pred HhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcC
Q 004426 575 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN 654 (754)
Q Consensus 575 l~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg 654 (754)
++++|++. .+....+.+....+++++| +..+++++..+|.++.+++++|.++..+|
T Consensus 152 ~~~~~~~~------~~~~~l~~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 207 (243)
T 2q7f_A 152 VELNENDT------EARFQFGMCLANEGMLDEA------------------LSQFAAVTEQDPGHADAFYNAGVTYAYKE 207 (243)
T ss_dssp HHHCTTCH------HHHHHHHHHHHHHTCCHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHhCCccH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCcccHHHHHHHHHHHHHcc
Confidence 99999863 2333344333344444444 78899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC
Q 004426 655 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH 689 (754)
Q Consensus 655 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~ 689 (754)
++++|+..++++++++|++..++..++.+....|+
T Consensus 208 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 242 (243)
T 2q7f_A 208 NREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242 (243)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999988766654
No 50
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=4e-19 Score=188.87 Aligned_cols=231 Identities=11% Similarity=-0.070 Sum_probs=182.7
Q ss_pred HHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHh-hCC
Q 004426 436 KDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASE-LDP 512 (754)
Q Consensus 436 ~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~-LdP 512 (754)
++|+..|++|+...| ..+|..+|..+...|+. +... |......+.+ ++|...|++|++ ++|
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~----------l~~~---g~~~~~~~~~---~~A~~~~~rAl~~~~p 96 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL----------LAEK---GDMNNAKLFS---DEAANIYERAISTLLK 96 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------HHHT---SCCHHHHHHH---HHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh----------hhhc---cchhhcccch---HHHHHHHHHHHHHhCc
Confidence 678888888888844 45667677665543210 0000 0000011112 789999999999 899
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhh
Q 004426 513 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VD-CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG 590 (754)
Q Consensus 513 ~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~-~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~ 590 (754)
++..+|.++|.++..+|++++|+..|+++|+++|+ +. .|...+.++...|++++|+..|++|++++|.....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~------ 170 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV------ 170 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHH------
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH------
Confidence 99999999999999999999999999999999995 65 78889999999999999999999999999976321
Q ss_pred hHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 591 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH 669 (754)
Q Consensus 591 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 669 (754)
......+... ..+++. |..+|+++|+.+|.++.+|.+.|..+.++|++++|+..|++|++.
T Consensus 171 ~~~~a~~~~~------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 171 YVTAALMEYY------------------CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHH------------------TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHH------------------HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1111111100 113333 588999999999999999999999999999999999999999996
Q ss_pred ---CCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 670 ---SSS-EHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (754)
Q Consensus 670 ---~P~-~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~ 706 (754)
.|+ ....+...+..+...|++++|...+++++++.|+
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 564 6778888899999999999999999999999997
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.83 E-value=5.4e-19 Score=179.51 Aligned_cols=189 Identities=14% Similarity=0.047 Sum_probs=163.8
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
++|+..|+++++++|+++.+|..+|.++...|++++|+..|+++++++|+ +..+..++.++...|++++|+..|+++++
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 54 EQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 77788888888889999999999999999999999999999999999995 77788899999999999999999999999
Q ss_pred --cCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcC
Q 004426 577 --LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN 654 (754)
Q Consensus 577 --l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg 654 (754)
.+|++ ..+...++.+....+++++ |+..++++++.+|.++.+++.+|.++..+|
T Consensus 134 ~~~~~~~------~~~~~~la~~~~~~g~~~~------------------A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 134 DTLYPER------SRVFENLGLVSLQMKKPAQ------------------AKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp CTTCTTH------HHHHHHHHHHHHHTTCHHH------------------HHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred CccCccc------HHHHHHHHHHHHHcCCHHH------------------HHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 66665 2233333333333344444 478899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 004426 655 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAF 710 (754)
Q Consensus 655 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~ 710 (754)
++++|+..++++++.+|++.+++..++.++..+|++++|...+++++++.|+...+
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999988743
No 52
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=4.1e-19 Score=188.45 Aligned_cols=264 Identities=10% Similarity=-0.033 Sum_probs=207.5
Q ss_pred hhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHH
Q 004426 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSI 477 (754)
Q Consensus 398 ~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~a 477 (754)
.+.++..++.+....++. ...+...++.++...|++++|+..++.. ..+...++..++..+...|++++|+..+.++
T Consensus 15 y~~ai~~~~~~~~~~p~~--~~e~~~~l~r~yi~~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~l 91 (291)
T 3mkr_A 15 YQQCINEAQRVKPSSPER--DVERDVFLYRAYLAQRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHSRRDAIVAELDRE 91 (291)
T ss_dssp HHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHHHTTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCchh--hHHHHHHHHHHHHHCCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 445566666655444433 2234556788999999999999877542 2222346667788888889999999999999
Q ss_pred HHc--cCCCHHHHHHhhh----cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH-HH
Q 004426 478 ISE--HKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-DC 550 (754)
Q Consensus 478 I~~--~~~~g~ay~~r~~----y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~-~~ 550 (754)
+.. +|++..++...+. -+..++|+..|++ |++..++..+|.++..+|++++|+..|+++++++|+. ..
T Consensus 92 l~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~ 166 (291)
T 3mkr_A 92 MSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLT 166 (291)
T ss_dssp HHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHH
Confidence 876 5887777766653 2344899998888 9999999999999999999999999999999999974 22
Q ss_pred HHHHH--HHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHH
Q 004426 551 LELRA--WLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV 628 (754)
Q Consensus 551 ~~~ra--~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~ 628 (754)
....+ .++...|++++|+..|+++++.+|++ ..+...++.+....+++++| ...
T Consensus 167 ~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~eA------------------~~~ 222 (291)
T 3mkr_A 167 QLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT------LLLLNGQAACHMAQGRWEAA------------------EGV 222 (291)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHHHTTCHHHH------------------HHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHH------------------HHH
Confidence 22233 34456699999999999999999987 44555555555566666666 889
Q ss_pred HHHHHHcCCCChhHHHhHHHHHHHcCCHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q 004426 629 INQMLINDPGKSFLRFRQSLLLLRLNCQKA-AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRA 697 (754)
Q Consensus 629 ~~~aL~l~P~~~~~~~~~g~~L~~lg~~ee-Al~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~ 697 (754)
++++|+++|+++++++++|.++..+|+..+ |.+.++++++++|+++.+.. ..-+.+.||++...|
T Consensus 223 l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 999999999999999999999999999976 57899999999999998876 466778888888877
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.83 E-value=1e-19 Score=186.64 Aligned_cols=214 Identities=11% Similarity=-0.004 Sum_probs=180.1
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV----DCLELRAWLFIAADDYESALRDTLA 573 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~----~~~~~ra~~~~~lgd~~~Al~d~~~ 573 (754)
++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++..+++ ..+..+|.++..+|++++|+..|++
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 99 (272)
T 3u4t_A 20 AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQA 99 (272)
T ss_dssp HHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 788889999999999999999999999999999999999999999943333 3478899999999999999999999
Q ss_pred HHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHc
Q 004426 574 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL 653 (754)
Q Consensus 574 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~l 653 (754)
+++++|++. .+...++.+....+++++| +..++++++++|.++.+++++|......
T Consensus 100 a~~~~~~~~------~~~~~l~~~~~~~~~~~~A------------------~~~~~~al~~~~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 100 AVDRDTTRL------DMYGQIGSYFYNKGNFPLA------------------IQYMEKQIRPTTTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHSTTCT------HHHHHHHHHHHHTTCHHHH------------------HHHHGGGCCSSCCCHHHHHHHHHHHHHT
T ss_pred HHhcCcccH------HHHHHHHHHHHHccCHHHH------------------HHHHHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 999999873 3444444444444444444 8899999999999999999999555566
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---CCh------HHHHHHHHHhhccC
Q 004426 654 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH---REEALSRAEKSISIE---RTF------EAFFLKAYILADTN 721 (754)
Q Consensus 654 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~---~eeAl~~~e~Ai~l~---~~~------~a~~~~~~~~~~~~ 721 (754)
+++++|+..++++++++|++..+++++|.++..+|+ +++|+..|++++++. |+. ++|+..|.++...+
T Consensus 156 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 699999999999999999999999999999999999 999999999999986 652 58888888876643
Q ss_pred CCCCchhHHHHHHHHHhc
Q 004426 722 LDPESSTYVIQLLEEALR 739 (754)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~ 739 (754)
--..-++.++.|++
T Consensus 236 ----~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 236 ----DKVKADAAWKNILA 249 (272)
T ss_dssp ----CHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHh
Confidence 33455566666664
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.83 E-value=1.6e-19 Score=175.58 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=138.4
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
++|+..|++|++++|+++.+|.++|.++..+|++++|+..+.+++..+|+ +..+...|.++...++++.|+..++++++
T Consensus 22 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~ 101 (184)
T 3vtx_A 22 DGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIA 101 (184)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77888899999999999999999999999999999999999999999996 78888899999999999999999999999
Q ss_pred cCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCH
Q 004426 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 656 (754)
Q Consensus 577 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~ 656 (754)
++|++ ..+...++.+....+++++| +..++++++++|.++.+|+++|.++.++|++
T Consensus 102 ~~~~~------~~~~~~lg~~~~~~g~~~~A------------------~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 102 LNTVY------ADAYYKLGLVYDSMGEHDKA------------------IEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HCTTC------HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hCccc------hHHHHHHHHHHHHhCCchhH------------------HHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 99987 33444455454555555555 8899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHH
Q 004426 657 KAAMRCLRLARNHSSSEHERLVYEGW 682 (754)
Q Consensus 657 eeAl~~~~~Al~l~P~~~ea~~~~G~ 682 (754)
++|+..|++|++++|+++ .+++|.
T Consensus 158 ~~A~~~~~~al~~~p~~a--~~~lal 181 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKA--KYELAL 181 (184)
T ss_dssp HHHHHHHHHHHHTTHHHH--HHCSCC
T ss_pred HHHHHHHHHHHhCCccCH--HHHHHh
Confidence 999999999999999875 355543
No 55
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.83 E-value=1.3e-20 Score=175.69 Aligned_cols=103 Identities=15% Similarity=0.235 Sum_probs=95.0
Q ss_pred ccCCCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhH
Q 004426 211 CLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGI 290 (754)
Q Consensus 211 ~~~~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~ 290 (754)
..+++...+|+|+|+|++|+|||.||+++|+||++||+++|.| ...+|+|+ +++++++|+.+|+|+|||++. ++.++
T Consensus 23 l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~-~~~~~~~f~~ll~~~Ytg~~~-~~~~~ 99 (127)
T 1r29_A 23 LRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLD-PEINPEGFNILLDFMYTSRLN-LREGN 99 (127)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECC-TTSCHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred HHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeC-CCCCHHHHHHHHHHHcCCCcC-cCHHH
Confidence 3455666679999999999999999999999999999999999 66788884 579999999999999999999 89999
Q ss_pred HHHHHHHhchhChhhHHHHHHHHHHh
Q 004426 291 VLELLSFANRFCCEEMKSACDAHLAS 316 (754)
Q Consensus 291 vlelL~aA~~f~l~~Lk~~Ce~~L~~ 316 (754)
+.+++.+|++|+++.|+..|+++|.+
T Consensus 100 ~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 100 IMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999999975
No 56
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.83 E-value=4e-21 Score=181.99 Aligned_cols=107 Identities=17% Similarity=0.149 Sum_probs=97.9
Q ss_pred ccCCCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCC-CCCHHHHHHHHHHhhcCCCCCCChh
Q 004426 211 CLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHD-GVSVEGLRAVEVYTRTSRVDLFCPG 289 (754)
Q Consensus 211 ~~~~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~-~vs~~~f~~lL~ylYTg~l~~i~~~ 289 (754)
...++...+|+|+|+|++|+|||.||+++|+||++||++++.|+ ..|.+ + ++++++|+.+|+|+|||++. ++.+
T Consensus 30 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l--~~~v~~~~~~~lL~~~Ytg~~~-i~~~ 104 (138)
T 2z8h_A 30 QRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTL--PEEVTVKGFEPLIQFAYTAKLI-LSKD 104 (138)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEEC--CTTSCHHHHHHHHHHHHHSCCC-CCTT
T ss_pred HHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEe--CCCCCHHHHHHHHHHhcCCCcc-cCHH
Confidence 34556666799999999999999999999999999999999874 47888 5 89999999999999999999 9999
Q ss_pred HHHHHHHHhchhChhhHHHHHHHHHHhhcCCHhh
Q 004426 290 IVLELLSFANRFCCEEMKSACDAHLASLVGDIED 323 (754)
Q Consensus 290 ~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~~~n 323 (754)
++.+|+.+|++|+++.|+..|++||.+.++ .+|
T Consensus 105 ~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~-~sn 137 (138)
T 2z8h_A 105 NVDEVCRCVEFLSVHNIEESCFQFLKFKFL-DST 137 (138)
T ss_dssp THHHHHHHHHHHTCGGGHHHHHHHTTCCCS-CCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-ccc
Confidence 999999999999999999999999999998 566
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.82 E-value=3.5e-19 Score=182.36 Aligned_cols=221 Identities=14% Similarity=0.095 Sum_probs=184.0
Q ss_pred HHHhCCHHHHHHHHHHHHHcc----CCCHHHHHHhhh----cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Q 004426 461 KYKVGQQYSAYKLINSIISEH----KPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIR 532 (754)
Q Consensus 461 ~~~~G~~~~A~~~~~~aI~~~----~~~g~ay~~r~~----y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~ 532 (754)
....|++++|+..+.+++... |..+.++..++. .+..++|+..|+++++++|+++.+|.++|.++..+|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 345578899999999999874 334555555543 233399999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhh
Q 004426 533 AAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWI 611 (754)
Q Consensus 533 eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~ 611 (754)
+|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++... ..... +....+++++
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~------~~~~~-~~~~~~~~~~----- 162 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR------SLWLY-LAEQKLDEKQ----- 162 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH------HHHHH-HHHHHHCHHH-----
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHH------HHHHH-HHHHhcCHHH-----
Confidence 999999999999995 8889999999999999999999999999999997421 11111 1111122333
Q ss_pred hhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHHc
Q 004426 612 KLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE----HERLVYEGWILYDT 687 (754)
Q Consensus 612 ~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~----~ea~~~~G~~ly~~ 687 (754)
|+..+++++...|.+...+. .+..+...+..++|+..++++++.+|.. +++++++|.+++.+
T Consensus 163 -------------A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 228 (275)
T 1xnf_A 163 -------------AKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL 228 (275)
T ss_dssp -------------HHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------HHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc
Confidence 58899999999999988765 7777788888999999999999998854 89999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCh
Q 004426 688 GHREEALSRAEKSISIERTF 707 (754)
Q Consensus 688 G~~eeAl~~~e~Ai~l~~~~ 707 (754)
|++++|+..|+++++++|+.
T Consensus 229 g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 229 GDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp TCHHHHHHHHHHHHTTCCTT
T ss_pred CCHHHHHHHHHHHHhCCchh
Confidence 99999999999999999954
No 58
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.82 E-value=8e-21 Score=181.44 Aligned_cols=102 Identities=16% Similarity=0.223 Sum_probs=90.1
Q ss_pred ccCCCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCC--CCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCCh
Q 004426 211 CLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVE--SKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCP 288 (754)
Q Consensus 211 ~~~~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~E--s~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~ 288 (754)
...++...+|+|+|+|++|+|||.||+++|+||++||+++|.| +...+|.| +++++++|+.+|+|+|||++. ++.
T Consensus 41 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l--~~v~~~~f~~lL~fiYtg~~~-i~~ 117 (144)
T 2ppi_A 41 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIEL--EGISVMVMREILDYIFSGQIR-LNE 117 (144)
T ss_dssp TTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEEC--CSSCHHHHHHHHHHHTTSCCC-CCT
T ss_pred HHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEe--CCCCHHHHHHHHHHHhCCCCC-CCH
Confidence 3455666679999999999999999999999999999999876 56678999 899999999999999999998 999
Q ss_pred hHHHHHHHHhchhChhhHHHHHHHHHH
Q 004426 289 GIVLELLSFANRFCCEEMKSACDAHLA 315 (754)
Q Consensus 289 ~~vlelL~aA~~f~l~~Lk~~Ce~~L~ 315 (754)
+++.+|+.+|++|+++.|++.|++||+
T Consensus 118 ~~v~~ll~~A~~l~i~~L~~~C~~~L~ 144 (144)
T 2ppi_A 118 DTIQDVVQAADLLLLTDLKTLCCEFLE 144 (144)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence 999999999999999999999999873
No 59
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.82 E-value=6.9e-21 Score=175.77 Aligned_cols=98 Identities=13% Similarity=0.048 Sum_probs=89.8
Q ss_pred cCCCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhHH
Q 004426 212 LSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIV 291 (754)
Q Consensus 212 ~~~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~v 291 (754)
.+++..+||+|+|+|++|+|||.||+++|+||++||.+++ ..+|+| +++++++|+.+|+|+|||++. ++.+++
T Consensus 19 ~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l--~~~~~~~f~~ll~~iYtg~~~-~~~~~v 91 (119)
T 3b84_A 19 REKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVL--PAGFAEIFGLLLDFFYTGHLA-LTSGNR 91 (119)
T ss_dssp HHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEE--CGGGHHHHHHHHHHHHHSCCC-CCTTTH
T ss_pred HhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEe--CCCCHHHHHHHHHHHcCCCCc-cCHHHH
Confidence 3456666799999999999999999999999999999987 468999 899999999999999999999 999999
Q ss_pred HHHHHHhchhChhhHHHHHHHHHHh
Q 004426 292 LELLSFANRFCCEEMKSACDAHLAS 316 (754)
Q Consensus 292 lelL~aA~~f~l~~Lk~~Ce~~L~~ 316 (754)
.+++.+|++|++++|+..|++||.+
T Consensus 92 ~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 92 DQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=195.56 Aligned_cols=302 Identities=12% Similarity=0.023 Sum_probs=224.2
Q ss_pred HHHHHHHhhhhcchhhHHHHHHHhhhchhh-hHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhc------c--hhhhh
Q 004426 385 YFLSQVAMEKDRVSNTTVMLLERLGECSTE-RWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG------H--IYSLA 455 (754)
Q Consensus 385 a~LswV~~d~~~r~~~~v~LLer~vr~~~~-~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~------~--~~a~~ 455 (754)
+..+....... +.+.+...+++++...+. ......+++.+|.++...|++++|+..|++|+.+. + ..++.
T Consensus 13 ~~~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 13 ALEGERLCKSG-DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34444444433 366788888887765433 32335678999999999999999999999998872 1 34677
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHHccCC-------------CHHHHHHhhh--------------------cCChhhHHH
Q 004426 456 GLARAKYKVGQQYSAYKLINSIISEHKP-------------TGWMYQERSL--------------------YNLGREKIV 502 (754)
Q Consensus 456 ~larv~~~~G~~~~A~~~~~~aI~~~~~-------------~g~ay~~r~~--------------------y~~g~eAl~ 502 (754)
.+|.++...|++++|+..+.+++...+. .|.+|...+. + ++|+.
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~---~~A~~ 168 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL---QAAVD 168 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH---HHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH---HHHHH
Confidence 8999999999999999999999876542 3445555555 4 88999
Q ss_pred HHHHHHhh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-H------HHHHHHHHHHHHcCCHHHHHH
Q 004426 503 DLNYASEL------DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-V------DCLELRAWLFIAADDYESALR 569 (754)
Q Consensus 503 dl~kAi~L------dP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~------~~~~~ra~~~~~lgd~~~Al~ 569 (754)
.|.+++++ .|..+.+|.++|.++..+|++++|+..|++++++.|+ . ..+.++|.++..+|++++|+.
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99999988 6667889999999999999999999999999998653 2 267789999999999999999
Q ss_pred HHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCC------hhHH
Q 004426 570 DTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK------SFLR 643 (754)
Q Consensus 570 d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~------~~~~ 643 (754)
.|++++++.|+.........+...++.+....+++++ |+..+++++++.+.. +.++
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~------------------A~~~~~~a~~~~~~~~~~~~~~~~~ 310 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK------------------AIDYHLKHLAIAQELNDRIGEGRAC 310 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH------------------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHH------------------HHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999988653222223344444444444444444 488899999987665 6789
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhcC------CCchhHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCChH
Q 004426 644 FRQSLLLLRLNCQKAAMRCLRLARNHS------SSEHERLVYEGWILYDTGHREE-ALSRAEKSISIERTFE 708 (754)
Q Consensus 644 ~~~g~~L~~lg~~eeAl~~~~~Al~l~------P~~~ea~~~~G~~ly~~G~~ee-Al~~~e~Ai~l~~~~~ 708 (754)
.++|.++..+|++++|+..+++|+++. +....++..+|.++..+|+..+ +....++...++.+.+
T Consensus 311 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 382 (406)
T 3sf4_A 311 WSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLN 382 (406)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999994 4457899999999999998744 3334444444444433
No 61
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.82 E-value=3e-20 Score=171.95 Aligned_cols=100 Identities=17% Similarity=0.139 Sum_probs=91.8
Q ss_pred ccCCCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhH
Q 004426 211 CLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGI 290 (754)
Q Consensus 211 ~~~~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~ 290 (754)
..+++..+||+|+|+|++|+|||.||+++|+||++||+++ ..+|++ +++++++|+.+|+|+|||++. ++.++
T Consensus 22 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l--~~~~~~~f~~ll~~~Ytg~~~-~~~~~ 93 (121)
T 1buo_A 22 MRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTL--DFLSPKTFQQILEYAYTATLQ-AKAED 93 (121)
T ss_dssp HHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEE--CSSCHHHHHHHHHHHHHSCCC-CCGGG
T ss_pred HHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEe--CCCCHHHHHHHHHhhcCCCcC-CCHHH
Confidence 3345666679999999999999999999999999999874 458999 899999999999999999999 99999
Q ss_pred HHHHHHHhchhChhhHHHHHHHHHHhhc
Q 004426 291 VLELLSFANRFCCEEMKSACDAHLASLV 318 (754)
Q Consensus 291 vlelL~aA~~f~l~~Lk~~Ce~~L~~~i 318 (754)
+.+++.+|++|++++|+..|+++|.+.|
T Consensus 94 ~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 94 LDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998754
No 62
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.81 E-value=7.8e-19 Score=189.73 Aligned_cols=223 Identities=14% Similarity=0.139 Sum_probs=184.5
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC--H
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQ----------IRAAISEIDRIIVFKL-SVDCLELRAWLFIAADD--Y 564 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~----------~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd--~ 564 (754)
++|+..+++++.+||++..+|++|+.++..+++ +++++..++++|..+| ++.+|+.|++++..+|+ +
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 678999999999999999999999999998877 6899999999999999 48999999999999994 8
Q ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhcccccccc--chHHHHHHHHHcCCCChhH
Q 004426 565 ESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDI--GSLAVINQMLINDPGKSFL 642 (754)
Q Consensus 565 ~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~--~al~~~~~aL~l~P~~~~~ 642 (754)
++++..++++++++|.|.. +.+.++ -.+...++. +++..++++|+.+|+|..+
T Consensus 127 ~~EL~~~~k~l~~dprNy~------AW~~R~-------------------~vl~~l~~~~~eel~~~~~~I~~~p~N~SA 181 (331)
T 3dss_A 127 ARELELCARFLEADERNFH------CWDYRR-------------------FVAAQAAVAPAEELAFTDSLITRNFSNYSS 181 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHH------HHHHHH-------------------HHHHHTTCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred HHHHHHHHHHHHhCCCCHH------HHHHHH-------------------HHHHHhCcCHHHHHHHHHHHHHHCCCCHHH
Confidence 9999999999999998832 222222 222222221 2588999999999999999
Q ss_pred HHhHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHc-----------CCHHHHHHHH
Q 004426 643 RFRQSLLLLRL--------------NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT-----------GHREEALSRA 697 (754)
Q Consensus 643 ~~~~g~~L~~l--------------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~-----------G~~eeAl~~~ 697 (754)
|++++.++..+ +.++++++.+.+|+..+|+|..+.+|+.|++... +.++++++.+
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 99999999998 5689999999999999999999999998888887 5699999999
Q ss_pred HHHHhcCCChHHHHHHHHHhhccCCCCCchh-HHHHHHHHHhcCCCCCcccc
Q 004426 698 EKSISIERTFEAFFLKAYILADTNLDPESST-YVIQLLEEALRCPSDGLRKG 748 (754)
Q Consensus 698 e~Ai~l~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 748 (754)
++.+++.|++ ...+++.++-...+|+.... .+.+.|+...+ =|-+|||
T Consensus 262 ~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~ 310 (331)
T 3dss_A 262 KELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA 310 (331)
T ss_dssp HHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHH
T ss_pred HHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhh
Confidence 9999999998 78899999887777765332 45556655543 3777777
No 63
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.81 E-value=2.6e-20 Score=170.87 Aligned_cols=99 Identities=17% Similarity=0.203 Sum_probs=89.3
Q ss_pred cCCCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhHH
Q 004426 212 LSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIV 291 (754)
Q Consensus 212 ~~~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~v 291 (754)
.+++..++|+|+|+|++|+|||.||+++|+||++||+++ .+..|.|..+++++++|+.+|+|+|||++. ++.+++
T Consensus 17 ~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~-~~~~~v 91 (116)
T 2vpk_A 17 REAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLN-LDSWNV 91 (116)
T ss_dssp HHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCC-CCTTTH
T ss_pred HhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcc-cCHHHH
Confidence 345666679999999999999999999999999999987 356788822399999999999999999999 899999
Q ss_pred HHHHHHhchhChhhHHHHHHHHHH
Q 004426 292 LELLSFANRFCCEEMKSACDAHLA 315 (754)
Q Consensus 292 lelL~aA~~f~l~~Lk~~Ce~~L~ 315 (754)
.+++.+|++|+++.|+..|+++|.
T Consensus 92 ~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 92 KEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999999999985
No 64
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=3.1e-18 Score=169.32 Aligned_cols=188 Identities=11% Similarity=-0.001 Sum_probs=155.9
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAA-DDYESALRDTLALL 575 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~l-gd~~~Al~d~~~al 575 (754)
++|+..|+++++++|+++.+|..+|.++..+|++++|+..|++++.++|+ +..+..++.++... |++++|+..|++++
T Consensus 25 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (225)
T 2vq2_A 25 RQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKAL 104 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 66777778888888888888888899999899999999999999988885 67778888888888 99999999999988
Q ss_pred h--cCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHc
Q 004426 576 A--LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL 653 (754)
Q Consensus 576 ~--l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~l 653 (754)
+ .+|+. ..+....+.+....+++++ |+..++++++.+|.++.+++++|.++..+
T Consensus 105 ~~~~~~~~------~~~~~~l~~~~~~~~~~~~------------------A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 105 ADPTYPTP------YIANLNKGICSAKQGQFGL------------------AEAYLKRSLAAQPQFPPAFKELARTKMLA 160 (225)
T ss_dssp TSTTCSCH------HHHHHHHHHHHHHTTCHHH------------------HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred cCcCCcch------HHHHHHHHHHHHHcCCHHH------------------HHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 8 33432 2233333333333334443 37788889999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 004426 654 NCQKAAMRCLRLARNHSS-SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEA 709 (754)
Q Consensus 654 g~~eeAl~~~~~Al~l~P-~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a 709 (754)
|++++|+..++++++.+| ++..++...+.++...|+.++|...+++++.+.|+...
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999 99999999999999999999999999999999998874
No 65
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.81 E-value=1.5e-20 Score=177.49 Aligned_cols=101 Identities=13% Similarity=0.028 Sum_probs=87.9
Q ss_pred cCCCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhHH
Q 004426 212 LSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIV 291 (754)
Q Consensus 212 ~~~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~v 291 (754)
.+++...+|+|+|+|++|+|||.||+++|+||++||.+++ ..+|+| +++++++|+.+|+|+|||++. ++.+++
T Consensus 20 ~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l--~~~~~~~f~~lL~fiYtg~~~-i~~~~v 92 (135)
T 2yy9_A 20 REKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVL--PAGFAEIFGLLLDFFYTGHLA-LTSGNR 92 (135)
T ss_dssp HHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEE--CGGGHHHHHHHHHHHHHSCCC-CCTTTH
T ss_pred HhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEe--CCCCHHHHHHHHHHHhCCCCC-CCHHHH
Confidence 3456666799999999999999999999999999999987 467999 899999999999999999999 899999
Q ss_pred HHHHHHhchhChhhHHHHHHHHHHhhcC
Q 004426 292 LELLSFANRFCCEEMKSACDAHLASLVG 319 (754)
Q Consensus 292 lelL~aA~~f~l~~Lk~~Ce~~L~~~i~ 319 (754)
.+|+.+|++|+++.|++.|++||.+.+.
T Consensus 93 ~~ll~~A~~l~i~~L~~~C~~~l~~~l~ 120 (135)
T 2yy9_A 93 DQVLLAAKELRVPEAVELCQSFQPQTSV 120 (135)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCCC----
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999988776
No 66
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.81 E-value=1.4e-19 Score=214.45 Aligned_cols=197 Identities=11% Similarity=-0.043 Sum_probs=157.6
Q ss_pred ccCCCHHHHHHhh-hcCChhhHHHHHHHHH--------hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HH
Q 004426 480 EHKPTGWMYQERS-LYNLGREKIVDLNYAS--------ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VD 549 (754)
Q Consensus 480 ~~~~~g~ay~~r~-~y~~g~eAl~dl~kAi--------~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~ 549 (754)
.+|+...+++..+ ..+..++|+..|++|+ +.+|+++.+|+++|.++.++|++++|+..|+++++++|+ +.
T Consensus 389 ~~p~~~~a~~~~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 468 (681)
T 2pzi_A 389 VDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR 468 (681)
T ss_dssp CCTTSTTHHHHHHTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred CCCCCcchHHhhcccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH
Confidence 3455555554444 2334489999999999 999999999999999999999999999999999999995 88
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHH
Q 004426 550 CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVI 629 (754)
Q Consensus 550 ~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~ 629 (754)
.++++|.++..+|++++|+.+|++|++++|++. .+...++.+....+++++ +..|
T Consensus 469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~------~~~~~lg~~~~~~g~~~~-------------------~~~~ 523 (681)
T 2pzi_A 469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL------APKLALAATAELAGNTDE-------------------HKFY 523 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS------HHHHHHHHHHHHHTCCCT-------------------TCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHcCChHH-------------------HHHH
Confidence 999999999999999999999999999999983 333444433333333333 3478
Q ss_pred HHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 004426 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEA-LSRAEKSI 701 (754)
Q Consensus 630 ~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeA-l~~~e~Ai 701 (754)
+++|+++|.++.+|+++|.++.++|++++|++.|++|++++|+++++++++|.+++..|+.+++ ...+++|+
T Consensus 524 ~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 524 QTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred HHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887774444 44444444
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.81 E-value=2e-19 Score=213.91 Aligned_cols=154 Identities=12% Similarity=0.054 Sum_probs=132.4
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
++|+..|++|++++|+++.+|+++|.+|.++|++++|++.|++||+++|+ +++++++|.++..+|++++|+..|++|++
T Consensus 26 ~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~ 105 (723)
T 4gyw_A 26 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105 (723)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67777888899999999999999999999999999999999999999996 78889999999999999999999999999
Q ss_pred cCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCH
Q 004426 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 656 (754)
Q Consensus 577 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~ 656 (754)
++|++ ..+...++.+.....++++| +..|++||+++|+++.+++++|.++..+|++
T Consensus 106 l~P~~------~~a~~~Lg~~~~~~g~~~eA------------------i~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 106 INPAF------ADAHSNLASIHKDSGNIPEA------------------IASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HCTTC------HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred hCCCC------HHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 99988 33444444444444444444 8899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchh
Q 004426 657 KAAMRCLRLARNHSSSEHE 675 (754)
Q Consensus 657 eeAl~~~~~Al~l~P~~~e 675 (754)
++|++.+++++++.|+..+
T Consensus 162 ~~A~~~~~kal~l~~~~~~ 180 (723)
T 4gyw_A 162 TDYDERMKKLVSIVADQLE 180 (723)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhHHh
Confidence 9999999999999887644
No 68
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=6.1e-17 Score=183.09 Aligned_cols=318 Identities=12% Similarity=-0.035 Sum_probs=213.2
Q ss_pred hhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhh----ccchHHHHHHHHHHhhhcchhhhhhHHHHHHH----hCCHHH
Q 004426 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFE----REEYKDACYYFEAAADAGHIYSLAGLARAKYK----VGQQYS 469 (754)
Q Consensus 398 ~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~----~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~----~G~~~~ 469 (754)
.+.+..+++++... ....+++.+|..+.. .+++++|+.+|++|++.++..++..+|.++.. .+++++
T Consensus 59 ~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 59 LTQAMDWFRRAAEQ-----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp HHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 44566666665432 124567777887777 77888888888888777777777778887777 677888
Q ss_pred HHHHHHHHHHccCCCHHHHHHhhh--------cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHH
Q 004426 470 AYKLINSIISEHKPTGWMYQERSL--------YNLGREKIVDLNYASELDPTLSFPYKYRAVAKME----EGQIRAAISE 537 (754)
Q Consensus 470 A~~~~~~aI~~~~~~g~ay~~r~~--------y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~----lg~~~eAl~~ 537 (754)
|+.+|.+++... ...++...+. -....+|+..|.+|++. +++.+++++|.+|.. .+++++|+..
T Consensus 134 A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 134 SVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 888888877653 2333333321 11236777788887775 567888888888877 7888888888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhh----hccccch--
Q 004426 538 IDRIIVFKLSVDCLELRAWLFIA----ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH----VRSWSPA-- 607 (754)
Q Consensus 538 ~~rAl~l~p~~~~~~~ra~~~~~----lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~----~~~~~~A-- 607 (754)
|++++... ++.+++.+|.++.. .+++++|+..|+++++..+.. +...++.+... .++.++|
T Consensus 210 ~~~a~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--------a~~~lg~~y~~g~~~~~d~~~A~~ 280 (490)
T 2xm6_A 210 YRKSATSG-DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSI--------AQFRLGYILEQGLAGAKEPLKALE 280 (490)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHH--------HHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred HHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHCCCCCCCCHHHHHH
Confidence 88887542 45666777777775 778888888888887764422 22222222211 2222222
Q ss_pred -----------hhhhhhhhccccc-----cccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcC---CHHHHHHHHHHHH
Q 004426 608 -----------DCWIKLYDRWSSV-----DDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLN---CQKAAMRCLRLAR 667 (754)
Q Consensus 608 -----------~~~~~l~~~~~~~-----~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg---~~eeAl~~~~~Al 667 (754)
+++..+....... .++. |+..++++++. +++.+++++|.++...| ++++|++.|++|+
T Consensus 281 ~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 281 WYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 2222333222222 3444 78888888876 56788899999988877 7888999999998
Q ss_pred hcCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhccCCCCCchhHHHHHHHHHh
Q 004426 668 NHSSSEHERLVYEGWILYD----TGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (754)
Q Consensus 668 ~l~P~~~ea~~~~G~~ly~----~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (754)
+. +++++++++|++++. .+++++|+..|++|++.. +..+++..|..+..-.--+..-..-+..++.|+
T Consensus 359 ~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 359 AK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 87 578899999999988 899999999999998875 456888888888763212333344555566555
No 69
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=7.7e-17 Score=182.25 Aligned_cols=283 Identities=11% Similarity=0.014 Sum_probs=161.0
Q ss_pred HHHhhhhhhHhh----ccchHHHHHHHHHHhhhcchhhhhhHHHHHHH----hCCHHHHHHHHHHHHHccCCCHHHHHHh
Q 004426 420 LALHQLGCVMFE----REEYKDACYYFEAAADAGHIYSLAGLARAKYK----VGQQYSAYKLINSIISEHKPTGWMYQER 491 (754)
Q Consensus 420 ~Al~~LG~v~~~----~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~----~G~~~~A~~~~~~aI~~~~~~g~ay~~r 491 (754)
.+++++|..+.. .+++++|+.+|++|++.++..++..+|.++.. .+++.+|+..|.++++.. ...++...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--~~~a~~~L 189 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG--NVWSCNQL 189 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHH
Confidence 344455555554 45555555555555555555555555555544 445555555555555442 22222222
Q ss_pred hh--------cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004426 492 SL--------YNLGREKIVDLNYASELDPTLSFPYKYRAVAKME----EGQIRAAISEIDRIIVFKLSVDCLELRAWLFI 559 (754)
Q Consensus 492 ~~--------y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~----lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~ 559 (754)
+. -...++|+..|.+|.+. .++.+++++|.++.. .+++++|+..|+++++.. ++..++.+|.++.
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~ 266 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG-NSIAQFRLGYILE 266 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
Confidence 21 11114555555555443 344555555555554 455555555555555321 2344444555554
Q ss_pred H----cCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhh-----ccccch-------------hhhhhhhhcc
Q 004426 560 A----ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV-----RSWSPA-------------DCWIKLYDRW 617 (754)
Q Consensus 560 ~----lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~-----~~~~~A-------------~~~~~l~~~~ 617 (754)
. .+|+++|+..|+++++.++.. +...++.+.... +++++| +++..++...
T Consensus 267 ~g~~~~~d~~~A~~~~~~a~~~~~~~--------a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 338 (490)
T 2xm6_A 267 QGLAGAKEPLKALEWYRKSAEQGNSD--------GQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIY 338 (490)
T ss_dssp HTTTSSCCHHHHHHHHHHHHTTTCHH--------HHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4 555555555555555442211 111111111111 122222 1222222221
Q ss_pred cc---ccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHH----cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH---
Q 004426 618 SS---VDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLR----LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD--- 686 (754)
Q Consensus 618 ~~---~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~--- 686 (754)
.. ..++. |+..++++++. +++.+++++|.++.. .+++++|+..|++|++.. ++++++++|++++.
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 11 11333 78899999997 789999999999999 999999999999999874 79999999999999
Q ss_pred -cCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhc
Q 004426 687 -TGHREEALSRAEKSISIERTFEAFFLKAYILAD 719 (754)
Q Consensus 687 -~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~ 719 (754)
.|++++|+..|++|+++.|+....-.--+.|+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~ 448 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDMNLFGTENRNITEKK 448 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHh
Confidence 999999999999999999874333333344444
No 70
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.80 E-value=2.2e-19 Score=212.77 Aligned_cols=184 Identities=13% Similarity=0.000 Sum_probs=167.2
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 508 SELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRII--------VFKLS-VDCLELRAWLFIAADDYESALRDTLALLALE 578 (754)
Q Consensus 508 i~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl--------~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~ 578 (754)
-.+||+++.+++..| ...|++++|++.|++++ +.+|+ ...++.+|.++..+|++++|+..|+++++++
T Consensus 387 p~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 463 (681)
T 2pzi_A 387 PLVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV 463 (681)
T ss_dssp BCCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Confidence 367999999999888 88999999999999999 99996 7889999999999999999999999999999
Q ss_pred CCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHH
Q 004426 579 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKA 658 (754)
Q Consensus 579 P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~ee 658 (754)
|++ ..+...++.+....+++++| +..|+++|+++|+++.+|+++|.++.++|++++
T Consensus 464 p~~------~~a~~~lg~~~~~~g~~~~A------------------~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~ 519 (681)
T 2pzi_A 464 GWR------WRLVWYRAVAELLTGDYDSA------------------TKHFTEVLDTFPGELAPKLALAATAELAGNTDE 519 (681)
T ss_dssp CCC------HHHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT
T ss_pred cch------HHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH
Confidence 998 44555565555555666666 889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhc
Q 004426 659 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILAD 719 (754)
Q Consensus 659 Al~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~ 719 (754)
++.|++|++++|+++++++++|.++..+|++++|++.|++|++++|++. |++++|.++..
T Consensus 520 -~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 520 -HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp -TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred -HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999987 99999999743
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=2.8e-18 Score=182.38 Aligned_cols=220 Identities=8% Similarity=-0.031 Sum_probs=176.8
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-cCCC-HHHHHHHHHHHHHc
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKME-------EGQI-------RAAISEIDRIIV-FKLS-VDCLELRAWLFIAA 561 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~-------lg~~-------~eAl~~~~rAl~-l~p~-~~~~~~ra~~~~~l 561 (754)
.+|+..|++|++.+|+++.+|+++|.++.. +|++ ++|+..|++|++ ++|+ ...|...+.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 578889999999999999999999999874 5885 999999999999 7996 77888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChh
Q 004426 562 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF 641 (754)
Q Consensus 562 gd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~ 641 (754)
|++++|+..|+++++++|++.. .+....+.+....+++++ |..+|++|++.+|.+..
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~-----~~~~~~~~~~~~~~~~~~------------------A~~~~~~a~~~~p~~~~ 169 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPT-----LVYIQYMKFARRAEGIKS------------------GRMIFKKAREDARTRHH 169 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTH-----HHHHHHHHHHHHHHCHHH------------------HHHHHHHHHTSTTCCTH
T ss_pred CCHHHHHHHHHHHHhccccCcc-----HHHHHHHHHHHHhcCHHH------------------HHHHHHHHHhcCCCCHH
Confidence 9999999999999999998631 023333333223333333 48899999999999999
Q ss_pred HHHhHHHHHHH-cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-hHHHHHHHHH
Q 004426 642 LRFRQSLLLLR-LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI---ERT-FEAFFLKAYI 716 (754)
Q Consensus 642 ~~~~~g~~L~~-lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l---~~~-~~a~~~~~~~ 716 (754)
+|...+.+... +|++++|+..|++|++++|++++++.++|..+..+|++++|...|++|++. .|+ ...++.+-..
T Consensus 170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~ 249 (308)
T 2ond_A 170 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 249 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 99877666443 799999999999999999999999999999999999999999999999995 554 4444333222
Q ss_pred hhccCCCCCchhHHHHHHHHHhc-CCCC
Q 004426 717 LADTNLDPESSTYVIQLLEEALR-CPSD 743 (754)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 743 (754)
+.... .....++.+++.|++ +|.+
T Consensus 250 ~~~~~---g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 250 FESNI---GDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHH---SCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHc---CCHHHHHHHHHHHHHHcccc
Confidence 22222 234567788888886 7864
No 72
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=8.7e-18 Score=170.54 Aligned_cols=209 Identities=12% Similarity=-0.052 Sum_probs=166.9
Q ss_pred HHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcC
Q 004426 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN 495 (754)
Q Consensus 418 ka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~ 495 (754)
...+++.+|..+...|++++|+..|+++++..+ ..++..+|.++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~---------------------------- 87 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEP---------------------------- 87 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------------------------
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCH----------------------------
Confidence 356788999999999999999999999998854 34566677777777766
Q ss_pred ChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004426 496 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV--FKLS-VDCLELRAWLFIAADDYESALRDTL 572 (754)
Q Consensus 496 ~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~--l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~ 572 (754)
++|+..|+++++++|++..+|.++|.++..+|++++|+..|++++. ..|+ +..+..+|.++..+|++++|+..|+
T Consensus 88 --~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 165 (252)
T 2ho1_A 88 --KLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFE 165 (252)
T ss_dssp --HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566667777777888888888888888888888888888888888 6675 5667778888888888888888888
Q ss_pred HHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHH
Q 004426 573 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR 652 (754)
Q Consensus 573 ~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~ 652 (754)
++++++|++. .+...++.+....+++++ |+..++++++.+|.++.++..++.++..
T Consensus 166 ~~~~~~~~~~------~~~~~la~~~~~~g~~~~------------------A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (252)
T 2ho1_A 166 KSLRLNRNQP------SVALEMADLLYKEREYVP------------------ARQYYDLFAQGGGQNARSLLLGIRLAKV 221 (252)
T ss_dssp HHHHHCSCCH------HHHHHHHHHHHHTTCHHH------------------HHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHhcCcccH------HHHHHHHHHHHHcCCHHH------------------HHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 8888888762 233333333333333333 3778888888899999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHH
Q 004426 653 LNCQKAAMRCLRLARNHSSSEHERLVYE 680 (754)
Q Consensus 653 lg~~eeAl~~~~~Al~l~P~~~ea~~~~ 680 (754)
+|++++|.+.+++++++.|++.++...+
T Consensus 222 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 222 FEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp TTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999876543
No 73
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.79 E-value=5e-19 Score=193.05 Aligned_cols=265 Identities=9% Similarity=-0.051 Sum_probs=212.4
Q ss_pred hhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCH----HHHHHhhh----cCChhhHHHHHHHHHhh------CCCChHHH
Q 004426 453 SLAGLARAKYKVGQQYSAYKLINSIISEHKPTG----WMYQERSL----YNLGREKIVDLNYASEL------DPTLSFPY 518 (754)
Q Consensus 453 a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g----~ay~~r~~----y~~g~eAl~dl~kAi~L------dP~~~~ay 518 (754)
.+..+|..+...|++++|+..+.+++...|+.. .++...+. .+..++|+..|++|+++ +|..+.+|
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 445678889999999999999999999988753 45555542 23449999999999999 79999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc------CCC-HHHHHHHHHHHHHcCC-----------------HHHHHHHHHHH
Q 004426 519 KYRAVAKMEEGQIRAAISEIDRIIVF------KLS-VDCLELRAWLFIAADD-----------------YESALRDTLAL 574 (754)
Q Consensus 519 ~~rg~~l~~lg~~~eAl~~~~rAl~l------~p~-~~~~~~ra~~~~~lgd-----------------~~~Al~d~~~a 574 (754)
.++|.++..+|++++|+..|++++++ .|. ...+..+|.++..+|+ +++|+..|+++
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999 443 4567889999999999 99999999999
Q ss_pred HhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChh------HHHhHHH
Q 004426 575 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF------LRFRQSL 648 (754)
Q Consensus 575 l~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~------~~~~~g~ 648 (754)
+++.+....-.....+...++.+....+++++ |+..+++++++.|.... +++++|.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~------------------A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 271 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQA------------------AIEHHQERLRIAREFGDRAAERRANSNLGN 271 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHH------------------HHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 98875432111222233334433333333333 58899999999887766 9999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHH
Q 004426 649 LLLRLNCQKAAMRCLRLARNHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFFLKAY 715 (754)
Q Consensus 649 ~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~-------~a~~~~~~ 715 (754)
++..+|++++|+..+++|+++.|+. +.++.++|.++..+|++++|+..|++++.+.+.. .+++..|.
T Consensus 272 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 351 (411)
T 4a1s_A 272 SHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGN 351 (411)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999999999999999999865 7899999999999999999999999999986554 27788887
Q ss_pred HhhccCCCCCchhHHHHHHHHHhc
Q 004426 716 ILADTNLDPESSTYVIQLLEEALR 739 (754)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~ 739 (754)
++.... .-..-++.+++|++
T Consensus 352 ~~~~~g----~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 352 AHSAIG----GHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTT----CHHHHHHHHHHHHH
T ss_pred HHHHhc----cHHHHHHHHHHHHH
Confidence 776653 34556677777765
No 74
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.79 E-value=9e-19 Score=175.72 Aligned_cols=172 Identities=15% Similarity=0.022 Sum_probs=134.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHh
Q 004426 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLEL----------------RAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 514 ~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~----------------ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
.+..+..+|..+++.|++++|+..|+++++++|+ +..++. +|.++..+|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4567788888888888888888888888888885 677777 88888888888888888888888
Q ss_pred cCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCC-
Q 004426 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNC- 655 (754)
Q Consensus 577 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~- 655 (754)
++|++ ..+...++.+....+++++| +..|+++|+++|+++.+|+++|.++..+|.
T Consensus 83 ~~p~~------~~~~~~lg~~~~~~g~~~~A------------------~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 83 KAPNN------VDCLEACAEMQVCRGQEKDA------------------LRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HCTTC------HHHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCC------HHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 88887 33444444444444444444 778888888889999999999999987765
Q ss_pred -HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 004426 656 -QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAF 710 (754)
Q Consensus 656 -~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~ 710 (754)
.++|...+++++...|. ..+++++|.+++.+|++++|+..|++|++++|+.++-
T Consensus 139 ~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 193 (208)
T 3urz_A 139 EKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHH
T ss_pred HHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHH
Confidence 45678888888765443 4588999999999999999999999999999998853
No 75
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.79 E-value=6.5e-19 Score=186.12 Aligned_cols=226 Identities=11% Similarity=-0.014 Sum_probs=149.8
Q ss_pred chHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhhC-C
Q 004426 434 EYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELD-P 512 (754)
Q Consensus 434 ~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~Ld-P 512 (754)
++++|+..|++| |.++..+|++++|+..|.+++...+..+ + +
T Consensus 32 ~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------~~~ 74 (292)
T 1qqe_A 32 KFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAG-------------------------NED 74 (292)
T ss_dssp HHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT-------------------------CHH
T ss_pred cHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC-------------------------CHH
Confidence 477777777765 2345556666666666555555432110 0 1
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcccc
Q 004426 513 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-------VDCLELRAWLFIAA-DDYESALRDTLALLALESNYMMF 584 (754)
Q Consensus 513 ~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-------~~~~~~ra~~~~~l-gd~~~Al~d~~~al~l~P~~~~~ 584 (754)
..+.+|.++|.++..+|++++|+..|++|+++.|. ...+.+.|.+|... |++++|+..|++|+++.|+...-
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 12467788888888888888888888888888662 23566777888885 88888888888888888754110
Q ss_pred ccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChh-------HHHhHHHHHHHcCCHH
Q 004426 585 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF-------LRFRQSLLLLRLNCQK 657 (754)
Q Consensus 585 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~-------~~~~~g~~L~~lg~~e 657 (754)
.....+...++.+....+++++ |+..++++++++|.+.. +++++|.++..+|+++
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~------------------A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 216 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIE------------------ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV 216 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHH------------------HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHH------------------HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHH
Confidence 0111122333333333333333 47788888888887764 6799999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHH-----HHHHHHHH--HcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 004426 658 AAMRCLRLARNHSSSEHERL-----VYEGWILY--DTGHREEALSRAEKSISIERTFEAFFLKA 714 (754)
Q Consensus 658 eAl~~~~~Al~l~P~~~ea~-----~~~G~~ly--~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~ 714 (754)
+|+..|+++++++|+..++. ..++..+- +.+++++|+..|++++.++|.+.-..++.
T Consensus 217 ~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 217 AAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp HHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 99999999999999987753 33444443 56889999999999999999998776664
No 76
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=5.1e-18 Score=167.74 Aligned_cols=207 Identities=12% Similarity=-0.017 Sum_probs=169.8
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccc
Q 004426 509 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 587 (754)
Q Consensus 509 ~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~ 587 (754)
+.+|+++.+|..+|.++...|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----- 76 (225)
T 2vq2_A 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA----- 76 (225)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----
T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-----
Confidence 347889999999999999999999999999999999996 78888999999999999999999999999999873
Q ss_pred hhhhHHHHHHhhhh-ccccchhhhhhhhhccccccccchHHHHHHHHH--cCCCChhHHHhHHHHHHHcCCHHHHHHHHH
Q 004426 588 VSGDHLVKLLNHHV-RSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI--NDPGKSFLRFRQSLLLLRLNCQKAAMRCLR 664 (754)
Q Consensus 588 ~~~~~~~~~l~~~~-~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~--l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~ 664 (754)
.+...++.+.... +++++ |+..++++++ .+|.++.+++++|.++..+|++++|+..++
T Consensus 77 -~~~~~l~~~~~~~~~~~~~------------------A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 137 (225)
T 2vq2_A 77 -EINNNYGWFLCGRLNRPAE------------------SMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLK 137 (225)
T ss_dssp -HHHHHHHHHHHTTTCCHHH------------------HHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhcCcHHH------------------HHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2333333333333 34444 4889999999 778889999999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-ChH-HHHHHHHHhhccCCCCCchhHHHHHHHHHh-cCC
Q 004426 665 LARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER-TFE-AFFLKAYILADTNLDPESSTYVIQLLEEAL-RCP 741 (754)
Q Consensus 665 ~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~-~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 741 (754)
++++.+|+++.++..+|.+++.+|++++|+..+++++.+.| +.. ++.+.+ .+.-..=+.+ .....++.++ ..|
T Consensus 138 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 138 RSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGW-KIAKALGNAQ---AAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHH-HHHHHTTCHH---HHHHHHHHHHHHCT
T ss_pred HHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH-HHHHhcCcHH---HHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999 766 554444 4433333433 3445555554 456
Q ss_pred CC
Q 004426 742 SD 743 (754)
Q Consensus 742 ~~ 743 (754)
.+
T Consensus 214 ~~ 215 (225)
T 2vq2_A 214 YS 215 (225)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 77
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.79 E-value=5.1e-18 Score=181.85 Aligned_cols=229 Identities=9% Similarity=-0.083 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHccCCCHHHHHHhhhc----C--ChhhHHHHHHHHHhhCCCChHHHHHHHHHH----HHc---CCHHHH
Q 004426 468 YSAYKLINSIISEHKPTGWMYQERSLY----N--LGREKIVDLNYASELDPTLSFPYKYRAVAK----MEE---GQIRAA 534 (754)
Q Consensus 468 ~~A~~~~~~aI~~~~~~g~ay~~r~~y----~--~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l----~~l---g~~~eA 534 (754)
++|+..+.++|..+|++..++..|+.. + ..++++..+++++..+|++..+|++|+.++ ..+ ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 356666666666666666666666431 2 348889999999999999999999999999 667 789999
Q ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhh
Q 004426 535 ISEIDRIIVFKL-SVDCLELRAWLFIAADDYE--SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWI 611 (754)
Q Consensus 535 l~~~~rAl~l~p-~~~~~~~ra~~~~~lgd~~--~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~ 611 (754)
++.++++++.+| ++.+|+.|++++..+|+++ +++..+++++++||.|. .|.+.++.+..........
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~------sAW~~R~~ll~~l~~~~~~---- 199 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNN------SAWSHRFFLLFSKKHLATD---- 199 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHSSGGGCCH----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhccccchh----
Confidence 999999999999 4899999999999999998 99999999999999873 3444343333322220000
Q ss_pred hhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHH-HHHHHHHHHhcC---CCchhHHHHHHHHHHHc
Q 004426 612 KLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKA-AMRCLRLARNHS---SSEHERLVYEGWILYDT 687 (754)
Q Consensus 612 ~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~ee-Al~~~~~Al~l~---P~~~ea~~~~G~~ly~~ 687 (754)
.+ -.+++..++++|..+|++..+|+.++.++.++|+..+ ....+.+++.++ |.+..|+..++-++..+
T Consensus 200 ~~--------~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 200 NT--------IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp HH--------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred hh--------HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 00 0125889999999999999999999999999999665 445777788777 88999999999999999
Q ss_pred CCHHHHHHHHHHHHh-cCCChH-HHHHHH
Q 004426 688 GHREEALSRAEKSIS-IERTFE-AFFLKA 714 (754)
Q Consensus 688 G~~eeAl~~~e~Ai~-l~~~~~-a~~~~~ 714 (754)
|+.++|+..|++++. ++|--. .+..|+
T Consensus 272 ~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 272 KKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 999999999999997 899877 344444
No 78
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.79 E-value=1.4e-20 Score=174.89 Aligned_cols=101 Identities=18% Similarity=0.209 Sum_probs=88.3
Q ss_pred ccCCCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhH
Q 004426 211 CLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGI 290 (754)
Q Consensus 211 ~~~~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~ 290 (754)
..+++...+|+|+|+|++|+|||.||+++|+||++||+++|.|+ .+|++. +++++++|+.+|+|+|||++. ++.++
T Consensus 23 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~-~~v~~~~f~~lL~~iYtg~~~-i~~~~ 98 (124)
T 2ihc_A 23 QRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLP-EEVTVKGFEPLIQFAYTAKLI-LSKEN 98 (124)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECC-TTSCHHHHHHHHHHHHHSEEE-EETTT
T ss_pred HHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeec-CCcCHHHHHHHHHHhcCCCcc-cCHHH
Confidence 34556666799999999999999999999999999999999875 478882 289999999999999999998 89999
Q ss_pred HHHHHHHhchhChhhHHHHHHHHHH
Q 004426 291 VLELLSFANRFCCEEMKSACDAHLA 315 (754)
Q Consensus 291 vlelL~aA~~f~l~~Lk~~Ce~~L~ 315 (754)
+.+++.+|++|+++.|+..|++||.
T Consensus 99 v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 99 VDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 9999999999999999999999875
No 79
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.79 E-value=1.6e-20 Score=174.58 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=90.5
Q ss_pred cCCCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCC-CCHHHHHHHHHHhhcCCCCCCChhH
Q 004426 212 LSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDG-VSVEGLRAVEVYTRTSRVDLFCPGI 290 (754)
Q Consensus 212 ~~~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~-vs~~~f~~lL~ylYTg~l~~i~~~~ 290 (754)
..++..++|+|+|+|++|+|||.||+++|+||++||.+++.| ..+|.+ ++ +++++|+.+|+|+|||++. ++.++
T Consensus 27 ~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l--~~~~~~~~f~~~l~~iYtg~~~-~~~~~ 101 (125)
T 3ohu_A 27 RKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSL--PEEVTARGFGPLLQFAYTAKLL-LSREN 101 (125)
T ss_dssp HHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEEC--CTTCCHHHHHHHHHHHTTSEEE-ECTTT
T ss_pred HhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEe--CCCCCHHHHHHHHHhHcCCceE-ECHHH
Confidence 345666679999999999999999999999999999999987 568999 77 9999999999999999999 89999
Q ss_pred HHHHHHHhchhChhhHHHHHHHHH
Q 004426 291 VLELLSFANRFCCEEMKSACDAHL 314 (754)
Q Consensus 291 vlelL~aA~~f~l~~Lk~~Ce~~L 314 (754)
+.+++.+|++|+++.|++.|++||
T Consensus 102 v~~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 102 IREVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp HHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHhC
Confidence 999999999999999999998764
No 80
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.78 E-value=7.2e-20 Score=168.91 Aligned_cols=95 Identities=21% Similarity=0.286 Sum_probs=87.6
Q ss_pred CCCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhHHH
Q 004426 213 SLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL 292 (754)
Q Consensus 213 ~~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~vl 292 (754)
+++..+||+|+|+|++|+|||.||+++|+||++||+++ ..+|.+ +++++++|+.+|+|+|||++. ++.+++.
T Consensus 23 ~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l--~~~~~~~f~~ll~~~Ytg~~~-i~~~~~~ 94 (119)
T 2q81_A 23 QLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHL--DISNAAGLGQVLEFMYTAKLS-LSPENVD 94 (119)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGG--GGCCHHHHHHHHHHHHHSCCC-CCTTTHH
T ss_pred hcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEe--CCCCHHHHHHHHHHHcCCCCc-cCHHHHH
Confidence 45666679999999999999999999999999999863 457888 889999999999999999999 9999999
Q ss_pred HHHHHhchhChhhHHHHHHHHHH
Q 004426 293 ELLSFANRFCCEEMKSACDAHLA 315 (754)
Q Consensus 293 elL~aA~~f~l~~Lk~~Ce~~L~ 315 (754)
+++.+|++|+++.|++.|++||.
T Consensus 95 ~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 95 DVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999999999999999985
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.78 E-value=3.5e-18 Score=172.09 Aligned_cols=170 Identities=8% Similarity=-0.086 Sum_probs=145.1
Q ss_pred hhHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 498 REKIVDLNYASELDP-TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALL 575 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP-~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al 575 (754)
++|+..|+++++++| .+..+++++|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|++++
T Consensus 24 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 103 (228)
T 4i17_A 24 AVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGI 103 (228)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 777888888899998 89999999999999999999999999999999997 7888999999999999999999999999
Q ss_pred hcCCCccccccch-hhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCC--ChhHHHhHHHHHHH
Q 004426 576 ALESNYMMFHGRV-SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG--KSFLRFRQSLLLLR 652 (754)
Q Consensus 576 ~l~P~~~~~~~~~-~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~--~~~~~~~~g~~L~~ 652 (754)
+++|++..+.... .+...++.+....+++++ |+..++++++++|. ++.+++++|.++..
T Consensus 104 ~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 104 KAVPGNATIEKLYAIYYLKEGQKFQQAGNIEK------------------AEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHH------------------HHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCcHHHHHHHHHHHHHHhHHHHHhccHHH------------------HHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 9999984321111 233333333333333333 58899999999999 99999999999999
Q ss_pred cCCH---------------------------HHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 004426 653 LNCQ---------------------------KAAMRCLRLARNHSSSEHERLVYEGWILY 685 (754)
Q Consensus 653 lg~~---------------------------eeAl~~~~~Al~l~P~~~ea~~~~G~~ly 685 (754)
+|.. ++|+..+++|++++|++.++...++.+..
T Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 166 NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 9999 99999999999999999999998887753
No 82
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.78 E-value=6.2e-20 Score=171.71 Aligned_cols=99 Identities=14% Similarity=0.156 Sum_probs=83.9
Q ss_pred CCCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCC-CCCHHHHHHHHHHhhcCCCCCCChhHH
Q 004426 213 SLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHD-GVSVEGLRAVEVYTRTSRVDLFCPGIV 291 (754)
Q Consensus 213 ~~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~-~vs~~~f~~lL~ylYTg~l~~i~~~~v 291 (754)
.++...||+|+|+|++|+|||.||+++|+||++||.++ ...+|+| + ++++++|+.+|+|+|||++. ++.+++
T Consensus 29 ~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l--~~~~~~~~f~~ll~~iYtg~~~-i~~~~~ 101 (129)
T 3ga1_A 29 LQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVEL--PAAVQPQSFQQILSFCYTGRLS-MNVGDQ 101 (129)
T ss_dssp HTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEEC--CTTCCHHHHHHHHHHHHHSEEE-CCTTTH
T ss_pred hcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEE--CCCCCHHHHHHHHHHHhCCccc-cCHHHH
Confidence 45556669999999999999999999999999999887 4568999 7 89999999999999999999 999999
Q ss_pred HHHHHHhchhChhhHHHHHHHHHHhhc
Q 004426 292 LELLSFANRFCCEEMKSACDAHLASLV 318 (754)
Q Consensus 292 lelL~aA~~f~l~~Lk~~Ce~~L~~~i 318 (754)
.+++.+|++|+++.|++.|++||.+..
T Consensus 102 ~~ll~~A~~~~i~~l~~~C~~~L~~~~ 128 (129)
T 3ga1_A 102 DLLMYTAGFLQIQEIMEKGTEFFLKVS 128 (129)
T ss_dssp HHHHHHHHHTTBTTSSCC---------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999998653
No 83
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.77 E-value=1.6e-17 Score=177.95 Aligned_cols=200 Identities=11% Similarity=-0.021 Sum_probs=173.1
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCC-HHHHHHHHHHH----HHc---CCHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEG--QIRAAISEIDRIIVFKLS-VDCLELRAWLF----IAA---DDYESA 567 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg--~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~----~~l---gd~~~A 567 (754)
++|+..+++++.++|++..+|++||.++..+| ++++|+..++++|.++|+ +.+|+.|++++ ..+ ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 78999999999999999999999999999999 999999999999999995 89999999988 777 899999
Q ss_pred HHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHH
Q 004426 568 LRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQS 647 (754)
Q Consensus 568 l~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g 647 (754)
+..++++++++|++. .+.+.++-+......++ ..+++..++++|+.||.|-.+|++|+
T Consensus 130 L~~~~~~l~~~pkny------~aW~~R~~vl~~l~~~~----------------~~~EL~~~~~~i~~d~~N~sAW~~R~ 187 (306)
T 3dra_A 130 FDILEAMLSSDPKNH------HVWSYRKWLVDTFDLHN----------------DAKELSFVDKVIDTDLKNNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCTT----------------CHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCH------HHHHHHHHHHHHhcccC----------------hHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999983 44444444444444444 01248899999999999999999999
Q ss_pred HHHHHcCC------HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHH-HHHHHHHhcC---C-ChHHHHHHHHH
Q 004426 648 LLLLRLNC------QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL-SRAEKSISIE---R-TFEAFFLKAYI 716 (754)
Q Consensus 648 ~~L~~lg~------~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl-~~~e~Ai~l~---~-~~~a~~~~~~~ 716 (754)
.++..+|+ ++++++.+++++..+|+|..+.+++++++-..|+..+++ ..+++.+.++ | +.-|...+|.+
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI 267 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 99999998 999999999999999999999999999999999977655 4777777776 4 44477777777
Q ss_pred hhc
Q 004426 717 LAD 719 (754)
Q Consensus 717 ~~~ 719 (754)
++.
T Consensus 268 ~~~ 270 (306)
T 3dra_A 268 YTQ 270 (306)
T ss_dssp HHH
T ss_pred HHc
Confidence 764
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.77 E-value=1.1e-17 Score=172.51 Aligned_cols=188 Identities=11% Similarity=0.046 Sum_probs=154.3
Q ss_pred HHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 004426 507 ASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (754)
Q Consensus 507 Ai~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~----~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~ 582 (754)
..+++|+++..++++|..+++.|++++|+..|+++++.+|+ +.+++.+|.++..+|++++|+..|+++++++|++.
T Consensus 7 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 7 SGRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp ----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 45789999999999999999999999999999999999994 57788999999999999999999999999999763
Q ss_pred ccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHH-----------------H
Q 004426 583 MFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLR-----------------F 644 (754)
Q Consensus 583 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~-----------------~ 644 (754)
. ...+...++.+...... +.....+++. |+..++++++.+|+++.++ +
T Consensus 87 ~---~~~a~~~lg~~~~~~~~-----------~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~ 152 (261)
T 3qky_A 87 R---VPQAEYERAMCYYKLSP-----------PYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQY 152 (261)
T ss_dssp T---HHHHHHHHHHHHHHHCC-----------CTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred h---hHHHHHHHHHHHHHhcc-----------cccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 1 11233333333322000 0000023333 5889999999999998888 8
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCChH
Q 004426 645 RQSLLLLRLNCQKAAMRCLRLARNHSSS---EHERLVYEGWILYDT----------GHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 645 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~~~G~~ly~~----------G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
++|.++..+|++++|+..|+++++..|+ .+++++++|.+++.+ |++++|+..|++++++.|+..
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 9999999999999999999999999999 567999999999987 999999999999999999874
No 85
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.77 E-value=2.4e-18 Score=159.41 Aligned_cols=121 Identities=17% Similarity=0.107 Sum_probs=109.8
Q ss_pred HHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccc
Q 004426 506 YASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMF 584 (754)
Q Consensus 506 kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~ 584 (754)
++..+||+.+.+|.++|.++.+.|++++|+..|++||+++|+ +..+.++|.++..+|++++|+.+|+++++++|++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--- 80 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--- 80 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh---
Confidence 566799999999999999999999999999999999999995 8889999999999999999999888888888765
Q ss_pred ccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHH
Q 004426 585 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLR 664 (754)
Q Consensus 585 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~ 664 (754)
+.+|+++|.++..+|++++|+..|+
T Consensus 81 -------------------------------------------------------~~a~~~lg~~~~~~~~~~~A~~~~~ 105 (126)
T 4gco_A 81 -------------------------------------------------------IKGYIRKAACLVAMREWSKAQRAYE 105 (126)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------------------------------------------------hHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4678999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHH
Q 004426 665 LARNHSSSEHERLVYEGWIL 684 (754)
Q Consensus 665 ~Al~l~P~~~ea~~~~G~~l 684 (754)
+|++++|++.+++.++|.++
T Consensus 106 ~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 106 DALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999998774
No 86
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.77 E-value=2.8e-18 Score=178.79 Aligned_cols=266 Identities=10% Similarity=-0.039 Sum_probs=208.8
Q ss_pred hhhhHHHHHHHhCCHHHHHHHHHHHHHccCCC----HHHHHHhhh----cCChhhHHHHHHHHHhh------CCCChHHH
Q 004426 453 SLAGLARAKYKVGQQYSAYKLINSIISEHKPT----GWMYQERSL----YNLGREKIVDLNYASEL------DPTLSFPY 518 (754)
Q Consensus 453 a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~----g~ay~~r~~----y~~g~eAl~dl~kAi~L------dP~~~~ay 518 (754)
.+...|..+...|++++|+..+.+++...|+. +.++...+. .+..++|+..|++++++ .|..+.++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 34556888999999999999999999998875 345545542 22338999999999998 77788999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 004426 519 KYRAVAKMEEGQIRAAISEIDRIIVFKLS-------VDCLELRAWLFIAADD--------------------YESALRDT 571 (754)
Q Consensus 519 ~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-------~~~~~~ra~~~~~lgd--------------------~~~Al~d~ 571 (754)
.++|.++..+|++++|+..+++++++.|. ...+..+|.++..+|+ +++|+..|
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999998652 2256779999999999 99999999
Q ss_pred HHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChh------HHHh
Q 004426 572 LALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF------LRFR 645 (754)
Q Consensus 572 ~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~------~~~~ 645 (754)
++++++.+..........+....+.+....+++++ |+..+++++++.|.... ++++
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------A~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD------------------AVIAHEQRLLIAKEFGDKAAERRAYSN 228 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH------------------HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHH------------------HHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 99998754321111222334444434334444444 47889999988776555 9999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHH
Q 004426 646 QSLLLLRLNCQKAAMRCLRLARNHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFFL 712 (754)
Q Consensus 646 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~-------~a~~~ 712 (754)
+|.++..+|++++|+..+++++++.|+. +.++.++|.++..+|++++|+..+++|+++.|.. .+++.
T Consensus 229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 308 (338)
T 3ro2_A 229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 308 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999999999999999999998877 8899999999999999999999999999986654 26777
Q ss_pred HHHHhhccCCCCCchhHHHHHHHHHhcC
Q 004426 713 KAYILADTNLDPESSTYVIQLLEEALRC 740 (754)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (754)
.|.++...+ .-...+..+++|++.
T Consensus 309 la~~~~~~g----~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 309 LGNAYTALG----NHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHT----CHHHHHHHHHHHHHC
T ss_pred HHHHHHHcC----ChHHHHHHHHHHHHH
Confidence 777766554 344556677777653
No 87
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.76 E-value=2.2e-16 Score=163.39 Aligned_cols=208 Identities=13% Similarity=0.046 Sum_probs=169.8
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKME----EGQIRAAISEIDRIIVFKLSVDCLELRAWLFIA----ADDYESALR 569 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~----lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~----lgd~~~Al~ 569 (754)
++|+..|.+|++ |+++.+++++|.++.. .+++++|+..|++|++++ ++..++++|.++.. .|++++|+.
T Consensus 23 ~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~ 99 (273)
T 1ouv_A 23 TQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTNKALQ 99 (273)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhCCCCcccCHHHHHH
Confidence 566667777777 7888999999999999 999999999999999886 68888999999999 999999999
Q ss_pred HHHHHHhcCCCccccccchhhhHHHHHHhhh----hccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHh
Q 004426 570 DTLALLALESNYMMFHGRVSGDHLVKLLNHH----VRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFR 645 (754)
Q Consensus 570 d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~----~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~ 645 (754)
.|+++++++ + ..+...++.+... .+++++ |+..++++++.+ ++.++++
T Consensus 100 ~~~~a~~~~--~------~~a~~~lg~~~~~~~~~~~~~~~------------------A~~~~~~a~~~~--~~~a~~~ 151 (273)
T 1ouv_A 100 YYSKACDLK--Y------AEGCASLGGIYHDGKVVTRDFKK------------------AVEYFTKACDLN--DGDGCTI 151 (273)
T ss_dssp HHHHHHHTT--C------HHHHHHHHHHHHHCSSSCCCHHH------------------HHHHHHHHHHTT--CHHHHHH
T ss_pred HHHHHHHcC--C------ccHHHHHHHHHHcCCCcccCHHH------------------HHHHHHHHHhcC--cHHHHHH
Confidence 999999985 2 2344444433333 333333 588999999986 7889999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHh
Q 004426 646 QSLLLLR----LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD----TGHREEALSRAEKSISIERTFEAFFLKAYIL 717 (754)
Q Consensus 646 ~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~----~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~ 717 (754)
+|.++.. .+++++|+..|++|++.. ++++++++|+++.. .|++++|+..|++|+++.| ..+++..|.++
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~ 228 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 9999999 999999999999999984 68999999999999 9999999999999999987 67999999998
Q ss_pred hccCCCCCchhHHHHHHHHHhc
Q 004426 718 ADTNLDPESSTYVIQLLEEALR 739 (754)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~ 739 (754)
.+..-....-..-++.++.|+.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHH
Confidence 8732112222334555666553
No 88
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.76 E-value=3.1e-18 Score=166.69 Aligned_cols=168 Identities=14% Similarity=0.061 Sum_probs=141.4
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchh
Q 004426 511 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (754)
Q Consensus 511 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~ 589 (754)
+|.....+..+|.++...|++++|+..|+++++++|+ +..++.+|.++..+|++++|+..|+++++++| +..+.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~---- 76 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYK---- 76 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHH----
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHH----
Confidence 5666778999999999999999999999999999996 88899999999999999999999999999999 63221
Q ss_pred hhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH 669 (754)
Q Consensus 590 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 669 (754)
.....+... ++ .++.+++..++++++++|+++.+++++|.++..+|++++|+..|++++++
T Consensus 77 --~~~~~~~~~-~~----------------~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 77 --SLIAKLELH-QQ----------------AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp --HHHHHHHHH-HH----------------HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHH-hh----------------cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 111111000 00 01223588999999999999999999999999999999999999999999
Q ss_pred CCCc--hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 670 SSSE--HERLVYEGWILYDTGHREEALSRAEKSIS 702 (754)
Q Consensus 670 ~P~~--~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~ 702 (754)
+|+. +.++.++|.++..+|+.++|+..|++++.
T Consensus 138 ~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 138 NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9986 55999999999999999999999999986
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.76 E-value=1e-18 Score=166.53 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=75.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhh
Q 004426 521 RAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNH 599 (754)
Q Consensus 521 rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~ 599 (754)
+|.++...|++++|++.+.+++..+|+ +..++.+|.+|..+|++++|+..|+++++++|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------------------ 64 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD------------------ 64 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------
Confidence 455555555555555555555555553 3444555555555555555555555444444433
Q ss_pred hhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHH
Q 004426 600 HVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY 679 (754)
Q Consensus 600 ~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~ 679 (754)
+.+|+++|.++..+|++++|+..|++|++++|++++++++
T Consensus 65 ----------------------------------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 104 (150)
T 4ga2_A 65 ----------------------------------------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLK 104 (150)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3445555555555566666666666666666665556666
Q ss_pred HHHHHHHcCCHHHHHHHH-HHHHhcCCChH-HHHHHHHHhh
Q 004426 680 EGWILYDTGHREEALSRA-EKSISIERTFE-AFFLKAYILA 718 (754)
Q Consensus 680 ~G~~ly~~G~~eeAl~~~-e~Ai~l~~~~~-a~~~~~~~~~ 718 (754)
+|.+++.+|++++|...| ++|++++|+.. +|.+|+..+.
T Consensus 105 la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 105 IAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 666655556555555443 55666655554 5555554443
No 90
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=4.1e-19 Score=205.98 Aligned_cols=186 Identities=10% Similarity=0.139 Sum_probs=160.9
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcC--CH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQ----------IRAAISEIDRIIVFKLS-VDCLELRAWLFIAAD--DY 564 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~----------~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lg--d~ 564 (754)
++|+..+++|++++|++..+|++|+.++..+|+ +++|++.++++|+.+|+ +.+|+.|++++..+| ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 788999999999999999999999999999999 99999999999999995 899999999999999 77
Q ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhc-cccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHH
Q 004426 565 ESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR-SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR 643 (754)
Q Consensus 565 ~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~-~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~ 643 (754)
++|+..+++++++||++.. |...++-+..... .+++ ++..++++|+.+|.+..+|
T Consensus 126 ~~el~~~~k~l~~d~~N~~------aW~~R~~~l~~l~~~~~~------------------el~~~~~~I~~~p~n~saW 181 (567)
T 1dce_A 126 ARELELCARFLEADERNFH------CWDYRRFVAAQAAVAPAE------------------ELAFTDSLITRNFSNYSSW 181 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTCCCHHH------------------HHHHHHTTTTTTCCCHHHH
T ss_pred HHHHHHHHHHHhhcccccc------HHHHHHHHHHHcCCChHH------------------HHHHHHHHHHHCCCCccHH
Confidence 9999999999999999832 3333332222222 1222 5889999999999999999
Q ss_pred HhHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHH------------HHHHH
Q 004426 644 FRQSLLLLRL--------------NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREE------------ALSRA 697 (754)
Q Consensus 644 ~~~g~~L~~l--------------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~ee------------Al~~~ 697 (754)
+++|.++..+ +++++|++.+++|+.++|++..+++|+||++...|++++ |+..|
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f 261 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCF 261 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEe
Confidence 9999999986 567999999999999999999999999999999999877 67778
Q ss_pred HHHHhcCCCh
Q 004426 698 EKSISIERTF 707 (754)
Q Consensus 698 e~Ai~l~~~~ 707 (754)
.+|+.++|+.
T Consensus 262 ~~~i~~~~~~ 271 (567)
T 1dce_A 262 SRPLTVGSRM 271 (567)
T ss_dssp EEEECTTBTT
T ss_pred ccceeccccc
Confidence 8898888864
No 91
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=179.19 Aligned_cols=247 Identities=15% Similarity=0.073 Sum_probs=176.6
Q ss_pred hhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhh--------cc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccC
Q 004426 413 TERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA--------GH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHK 482 (754)
Q Consensus 413 ~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~--------~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~ 482 (754)
++......++..+|..+...|++++|+..|++++++ .+ ..++..+|.++...|++++|...+.+++....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 333445678899999999999999999999999985 11 24566788888888888777776666654421
Q ss_pred CCHHHHHHhhhcCChhhHHHHHHHHH-hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CC-HHHHH
Q 004426 483 PTGWMYQERSLYNLGREKIVDLNYAS-ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK--------LS-VDCLE 552 (754)
Q Consensus 483 ~~g~ay~~r~~y~~g~eAl~dl~kAi-~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~--------p~-~~~~~ 552 (754)
+.. .-+|..+.+|.++|.++..+|++++|+..|++++++. |. ...+.
T Consensus 101 -----------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 101 -----------------------KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp -----------------------HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -----------------------HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 000 1146667889999999999999999999999999984 32 45677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--------CCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc
Q 004426 553 LRAWLFIAADDYESALRDTLALLAL--------ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG 624 (754)
Q Consensus 553 ~ra~~~~~lgd~~~Al~d~~~al~l--------~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~ 624 (754)
.+|.++..+|++++|+..|++++++ +|.. ..+...++.+....+++++|
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A----------------- 214 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV------AKTKNNLASCYLKQGKFKQA----------------- 214 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHH------HHHHHHHHHHHHHHTCHHHH-----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHHHcCCHHHH-----------------
Confidence 8999999999999999999999998 4433 33444444444444555555
Q ss_pred hHHHHHHHHHc---------CCCChhHHHhHHHH------HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC
Q 004426 625 SLAVINQMLIN---------DPGKSFLRFRQSLL------LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH 689 (754)
Q Consensus 625 al~~~~~aL~l---------~P~~~~~~~~~g~~------L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~ 689 (754)
+..+++++++ +|.....+...+.. ....+.+.+|+..++++....|..+.++.++|.++..+|+
T Consensus 215 -~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 293 (311)
T 3nf1_A 215 -ETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK 293 (311)
T ss_dssp -HHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC
T ss_pred -HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC
Confidence 7788888865 34444455444444 4445666677789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 004426 690 REEALSRAEKSISIERT 706 (754)
Q Consensus 690 ~eeAl~~~e~Ai~l~~~ 706 (754)
+++|+..|++|+++.|.
T Consensus 294 ~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 294 FEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999999875
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.75 E-value=2.5e-18 Score=163.82 Aligned_cols=146 Identities=14% Similarity=0.059 Sum_probs=126.2
Q ss_pred CCHHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHc
Q 004426 483 PTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAA 561 (754)
Q Consensus 483 ~~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~l 561 (754)
++|.++..++.+ ++|++.|.+++..+|+++.+++++|.+|.++|++++|+..|+++|+++|+ +.+++++|.++..+
T Consensus 2 ~LG~~~~~~~~~---e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 2 PLGSMRRSKADV---ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp -----CCCHHHH---HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HhHHHHHHcChH---HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 356677777666 99999999999999999999999999999999999999999999999995 89999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChh
Q 004426 562 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF 641 (754)
Q Consensus 562 gd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~ 641 (754)
|++++|+..|+++++++|++ ++
T Consensus 79 ~~~~~A~~~~~~al~~~p~~----------------------------------------------------------~~ 100 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQ----------------------------------------------------------KD 100 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTC----------------------------------------------------------HH
T ss_pred CchHHHHHHHHHHHHhCCCC----------------------------------------------------------HH
Confidence 99999999888888888765 46
Q ss_pred HHHhHHHHHHHcCCHHHHHHH-HHHHHhcCCCchhHHHHHHHHHHHcCC
Q 004426 642 LRFRQSLLLLRLNCQKAAMRC-LRLARNHSSSEHERLVYEGWILYDTGH 689 (754)
Q Consensus 642 ~~~~~g~~L~~lg~~eeAl~~-~~~Al~l~P~~~ea~~~~G~~ly~~G~ 689 (754)
+|+++|.++.++|++++|... +++|++++|++++++..++.++..+|+
T Consensus 101 ~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 101 LVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 688888888888888776665 588999999999998888888888775
No 93
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.75 E-value=3.4e-17 Score=178.44 Aligned_cols=246 Identities=12% Similarity=-0.022 Sum_probs=158.6
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhh----c----chhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHH
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADA----G----HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQE 490 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~----~----~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~ 490 (754)
...++.+|..+...|++++|+..|++|+++ + ...++..+|.++...|+++.|+..+.+++...+..+.
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---- 178 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA---- 178 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc----
Confidence 345667999999999999999999999987 1 1346788899999999999998888888876543211
Q ss_pred hhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHcCC
Q 004426 491 RSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-------VDCLELRAWLFIAADD 563 (754)
Q Consensus 491 r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-------~~~~~~ra~~~~~lgd 563 (754)
..|..+.++.++|.++..+|++++|+..|++|+.+.+. ...+.++|.++..+|+
T Consensus 179 -------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 179 -------------------YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp -------------------THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------------------chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 01112334555555555555555555555555555331 1234455555555555
Q ss_pred HHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHc-----CCC
Q 004426 564 YESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN-----DPG 638 (754)
Q Consensus 564 ~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l-----~P~ 638 (754)
+++|+..|++|+++.+....-.+...+...++.+....+++++| +..+++++++ +|.
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~ 301 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA------------------HEYHSKGMAYSQKAGDVI 301 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHHHHHcCCHH
Confidence 55555555555553211100000122222222222222222222 4455555555 333
Q ss_pred ChhHHHhHHHHHHHcCC---HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 639 KSFLRFRQSLLLLRLNC---QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (754)
Q Consensus 639 ~~~~~~~~g~~L~~lg~---~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~ 706 (754)
....+..+|.++...|+ .++|+..++++ ...|...+++.++|.++..+|++++|+..|++|+.+..+
T Consensus 302 ~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 302 YLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 33345678889999998 88899999887 667777889999999999999999999999999987654
No 94
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=2.8e-16 Score=179.39 Aligned_cols=212 Identities=10% Similarity=-0.053 Sum_probs=167.6
Q ss_pred hHHHHHHHHHhhCCCChHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-cCCC-HHHHHHHHHHHHHcC
Q 004426 499 EKIVDLNYASELDPTLSFPYKYRAVAKME-------EGQIR-------AAISEIDRIIV-FKLS-VDCLELRAWLFIAAD 562 (754)
Q Consensus 499 eAl~dl~kAi~LdP~~~~ay~~rg~~l~~-------lg~~~-------eAl~~~~rAl~-l~p~-~~~~~~ra~~~~~lg 562 (754)
.++..|++|+..+|+++..|+++|..+.. +|+++ +|+..|++|++ +.|+ ...|...+.++...|
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 56778999999999999999999999987 79987 99999999997 8996 788889999999999
Q ss_pred CHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhH
Q 004426 563 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL 642 (754)
Q Consensus 563 d~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~ 642 (754)
++++|...|+++++++|++.. .+....+.+....+++++ |..+|++|++..|.....
T Consensus 336 ~~~~A~~~~~~al~~~p~~~~-----~~~~~~~~~~~~~~~~~~------------------A~~~~~~Al~~~~~~~~~ 392 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAIEDIDPT-----LVYIQYMKFARRAEGIKS------------------GRMIFKKAREDARTRHHV 392 (530)
T ss_dssp CHHHHHHHHHHHHHSSSSCHH-----HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHTCTTCCTHH
T ss_pred CHHHHHHHHHHHhCccccCch-----HHHHHHHHHHHHhcCHHH------------------HHHHHHHHHhccCCchHH
Confidence 999999999999999998621 122222222222222233 488999999999998888
Q ss_pred HHhHHHH-HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHh
Q 004426 643 RFRQSLL-LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYIL 717 (754)
Q Consensus 643 ~~~~g~~-L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~----~a~~~~~~~~ 717 (754)
+...+.+ +..+|++++|...|++|++..|++++++.+.|..+..+|++++|...|++|+...|.. ...+.+-..+
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 8777765 3469999999999999999999999999999999999999999999999999986543 2344443444
Q ss_pred hccCCCCCchhHHHHH
Q 004426 718 ADTNLDPESSTYVIQL 733 (754)
Q Consensus 718 ~~~~~~~~~~~~~~~~ 733 (754)
+...=|+++...|.+.
T Consensus 473 e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 473 ESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHSSCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 4444354444444433
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.75 E-value=2.4e-17 Score=174.12 Aligned_cols=170 Identities=14% Similarity=0.053 Sum_probs=148.7
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccc
Q 004426 509 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 587 (754)
Q Consensus 509 ~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~ 587 (754)
..-|+...++..+|..+.+.|++++|+..|+++++++|+ +..++.+|.++..+|++++|+..|+++++++|++..
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~---- 186 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY---- 186 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH----
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH----
Confidence 344999999999999999999999999999999999995 888999999999999999999999999999997521
Q ss_pred hhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 004426 588 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (754)
Q Consensus 588 ~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 667 (754)
.............+.+. |+..++++++.+|+++++++++|.++..+|++++|++.|++++
T Consensus 187 --~~~~~~~~l~~~~~~~~------------------a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l 246 (287)
T 3qou_A 187 --QGLVAQIELLXQAADTP------------------EIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHL 246 (287)
T ss_dssp --HHHHHHHHHHHHHTSCH------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhhcccCc------------------cHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11111111111222222 4788999999999999999999999999999999999999999
Q ss_pred hcCCCc--hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 668 NHSSSE--HERLVYEGWILYDTGHREEALSRAEKSIS 702 (754)
Q Consensus 668 ~l~P~~--~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~ 702 (754)
+.+|++ +.++.++|.++..+|+.++|+..|+|+++
T Consensus 247 ~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 247 RXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999 89999999999999999999999999986
No 96
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.75 E-value=2.4e-17 Score=157.30 Aligned_cols=170 Identities=15% Similarity=0.166 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHH
Q 004426 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 593 (754)
Q Consensus 515 ~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~ 593 (754)
+..|..+|.++...|++++|+..|+++++++|+ +..+...|.++...|++++|+..|+++++++|++. .+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~ 81 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV------KVATV 81 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHH
Confidence 456777888888888888888888888888774 66677778888888888888888888888888762 22333
Q ss_pred HHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (754)
Q Consensus 594 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 673 (754)
.+.+....+++++| +..+++++..+|.++.+++++|.++..+|++++|+..++++++.+|++
T Consensus 82 ~a~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 82 LGLTYVQVQKYDLA------------------VPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHHHHHTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhcCHHHH------------------HHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 33333333333333 677888888888888999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 674 HERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 674 ~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
+.++.++|.+++.+|++++|+..+++++.+.|++.
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 99999999999999999999999999999988764
No 97
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.75 E-value=1e-18 Score=161.45 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=82.4
Q ss_pred CCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhHHHH
Q 004426 214 LEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLE 293 (754)
Q Consensus 214 ~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~vle 293 (754)
++...+|+|+|+|++|+|||+|||++|+||++ ....|+| +++++++|+.+|+|+|||++. ++.+++.+
T Consensus 27 ~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l--~~v~~~~f~~ll~fiYtg~~~-i~~~~v~~ 94 (119)
T 3m5b_A 27 RPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALG--EGISPSTFAQLLNFVYGESVE-LQPGELRP 94 (119)
T ss_dssp TTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECC--SSCCHHHHHHHHHHHTTCCEE-ECGGGHHH
T ss_pred cCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEe--CCCCHHHHHHHHHHHcCCCcC-cCHHHHHH
Confidence 35555699999999999999999999999985 3467889 999999999999999999999 99999999
Q ss_pred HHHHhchhChhhHHHHHHHHHHh
Q 004426 294 LLSFANRFCCEEMKSACDAHLAS 316 (754)
Q Consensus 294 lL~aA~~f~l~~Lk~~Ce~~L~~ 316 (754)
+|.+|++|+++.|++.|++++++
T Consensus 95 ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 95 LQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 99999999999999999998865
No 98
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.74 E-value=1e-16 Score=180.55 Aligned_cols=302 Identities=15% Similarity=0.071 Sum_probs=164.2
Q ss_pred hhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccch---HHHHHHHHHHhhhcchhhhhhHHHHHHHhC-----CHHH
Q 004426 398 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEY---KDACYYFEAAADAGHIYSLAGLARAKYKVG-----QQYS 469 (754)
Q Consensus 398 ~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~---~eA~~~f~~AL~~~~~~a~~~larv~~~~G-----~~~~ 469 (754)
.+.+..+++++... ....+++++|.++...|++ ++|+.+|++|++. +..++..+|.++...| ++.+
T Consensus 19 ~~~A~~~~~~aa~~-----g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~~~ 92 (452)
T 3e4b_A 19 TVTAQQNYQQLAEL-----GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEHHE 92 (452)
T ss_dssp HHHHHHHHHHHHHH-----TCCTGGGTCC-----------------------------CHHHHHHHHHTC--CCHHHHHH
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 45566666665432 1245778899999988888 8999999999988 7778888999777666 6788
Q ss_pred HHHHHHHHHHccCC-----CHHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH----HHH
Q 004426 470 AYKLINSIISEHKP-----TGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISE----IDR 540 (754)
Q Consensus 470 A~~~~~~aI~~~~~-----~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~----~~r 540 (754)
|+.+|.+++...+. +|.+|...+......++...+.++.+ +.++.+++++|.++...+.+++++.. +.+
T Consensus 93 A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~ 170 (452)
T 3e4b_A 93 AESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKA 170 (452)
T ss_dssp HHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 99999999987654 35555544433333556666766665 45688999999999999966666655 444
Q ss_pred HHHcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhcc
Q 004426 541 IIVFKLSVDCLELRAWLFIAAD---DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRW 617 (754)
Q Consensus 541 Al~l~p~~~~~~~ra~~~~~lg---d~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~ 617 (754)
+..- ++.+++++|.+|...| ++++|+..|+++.+.+|.....+ ..++.+.....
T Consensus 171 a~~~--~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~------~~Lg~~y~~g~--------------- 227 (452)
T 3e4b_A 171 ALNT--TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV------DSVARVLGDAT--------------- 227 (452)
T ss_dssp HTTT--CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH------HHHHHHHTCGG---------------
T ss_pred HHcC--CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH------HHHHHHHhCCC---------------
Confidence 4433 3557889999999999 99999999999999999874321 22221111110
Q ss_pred ccccccc-hHHHHHHHHHcCCCChhHHHhHHHH-H--HHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcC-----
Q 004426 618 SSVDDIG-SLAVINQMLINDPGKSFLRFRQSLL-L--LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG----- 688 (754)
Q Consensus 618 ~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~-L--~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G----- 688 (754)
....|+. |+..|+++. |+++.+++++|.+ + ...+++++|+..|++|.+.. ++++++++|.+++ .|
T Consensus 228 ~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp GSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCC
Confidence 0001221 345555554 5555555555555 2 34555555555555555432 5555555555554 44
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHHhhccCCCCCchhHHHHHHHHHh
Q 004426 689 HREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEAL 738 (754)
Q Consensus 689 ~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (754)
++++|+..|++|. .-+..|.++.|..+.+-.--+..-..-+..++.|.
T Consensus 302 d~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 349 (452)
T 3e4b_A 302 DAKAAEAHFEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA 349 (452)
T ss_dssp CHHHHHHHHHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 5555555555555 33333555555555443222223334444444443
No 99
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.74 E-value=2.8e-17 Score=173.60 Aligned_cols=178 Identities=10% Similarity=-0.067 Sum_probs=142.9
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---C----HHHHHHHHHHHHHcCCHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL---S----VDCLELRAWLFIAADDYESALRD 570 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p---~----~~~~~~ra~~~~~lgd~~~Al~d 570 (754)
++|+..|++| |.++..+|++++|+..|++|+++.+ + ...+.++|.+|..+|++++|+..
T Consensus 34 ~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~ 99 (292)
T 1qqe_A 34 EEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99 (292)
T ss_dssp HHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7777777777 6789999999999999999999953 1 35678899999999999999999
Q ss_pred HHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccc-cccc-hHHHHHHHHHcCCCC------hhH
Q 004426 571 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSV-DDIG-SLAVINQMLINDPGK------SFL 642 (754)
Q Consensus 571 ~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~-~d~~-al~~~~~aL~l~P~~------~~~ 642 (754)
|++|+++.|+.-...+- +.+|..++..+... ++++ |+..|++||++.|.. +.+
T Consensus 100 ~~~Al~l~~~~g~~~~~-------------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 160 (292)
T 1qqe_A 100 LENAIQIFTHRGQFRRG-------------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC 160 (292)
T ss_dssp HHHHHHHHHHTTCHHHH-------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHH-------------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 99999999865221111 22333333333332 4444 589999999999876 578
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchh-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE-------RLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 643 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e-------a~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
+.++|.++..+|++++|+..|++|+++.|++.. ++.++|.++..+|++++|+..|++++.++|+|.
T Consensus 161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999999999865 578999999999999999999999999999986
No 100
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.74 E-value=1.8e-16 Score=171.40 Aligned_cols=267 Identities=11% Similarity=0.007 Sum_probs=198.6
Q ss_pred HHHHhhhhhhHhhccchHHHHHHHHHHhhhcch-------hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCC-------
Q 004426 419 MLALHQLGCVMFEREEYKDACYYFEAAADAGHI-------YSLAGLARAKYKVGQQYSAYKLINSIISEHKPT------- 484 (754)
Q Consensus 419 a~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~-------~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~------- 484 (754)
...+..+|.++...|++++|+..+++++...+. .++..+|.++...|++++|...+.+++...+..
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 345566788888888888888888888876321 145567778888888888888888887764322
Q ss_pred ------HHHHHHhhhcCChhhHHHHHHHHHhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---
Q 004426 485 ------GWMYQERSLYNLGREKIVDLNYASELD--------PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS--- 547 (754)
Q Consensus 485 ------g~ay~~r~~y~~g~eAl~dl~kAi~Ld--------P~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~--- 547 (754)
|.++...|.+ ++|...|++++++. |....++.++|.++..+|++++|+..+++++++.+.
T Consensus 94 ~~~~~la~~~~~~G~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFL---QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 3333333333 88888888888876 456778999999999999999999999999999874
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc-cccchhhhHHHHHHhhhhccccchhhhhhhhhcccccccc
Q 004426 548 ---VDCLELRAWLFIAADDYESALRDTLALLALESNYMM-FHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDI 623 (754)
Q Consensus 548 ---~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~-~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~ 623 (754)
...+.+++.++...|++++|+..+++++++.+.... .............+.....++++
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----------------- 233 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA----------------- 233 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH-----------------
Confidence 245677889999999999999999999998654210 00000000011111112222333
Q ss_pred chHHHHHHHHHcCCCCh----hHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC------chhHHHHHHHHHHHcCCHHHH
Q 004426 624 GSLAVINQMLINDPGKS----FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS------EHERLVYEGWILYDTGHREEA 693 (754)
Q Consensus 624 ~al~~~~~aL~l~P~~~----~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~------~~ea~~~~G~~ly~~G~~eeA 693 (754)
|...+++++...|... ..+.++|.++..+|++++|.+.++++++..+. ..+++..+|.++..+|++++|
T Consensus 234 -A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 234 -AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp -HHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred -HHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 4778888888777642 35688999999999999999999999988654 236889999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 004426 694 LSRAEKSISIERT 706 (754)
Q Consensus 694 l~~~e~Ai~l~~~ 706 (754)
...+++|+.+.+.
T Consensus 313 ~~~l~~al~~~~~ 325 (373)
T 1hz4_A 313 QRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998664
No 101
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.72 E-value=9.8e-18 Score=153.98 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=81.9
Q ss_pred cCCCCCCcEEEEECCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChhHH
Q 004426 212 LSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIV 291 (754)
Q Consensus 212 ~~~~~~~~V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~~v 291 (754)
..++...+|+|+|+|++|+|||.||+++|+||++||.++ ..+|++ +++++++|+.+|+|+|||++..++.+++
T Consensus 26 ~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l--~~~~~~~f~~~l~~~Ytg~~~~~~~~~~ 98 (116)
T 3fkc_A 26 RGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVEL--SFIRAEIFAEILNYIYSSKIVRVRSDLL 98 (116)
T ss_dssp HHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEE--CSSCHHHHHHHHHHHTTSCCCSCCHHHH
T ss_pred HhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEe--CCCCHHHHHHHHHhhcCCCcCCCCHHHH
Confidence 345666679999999999999999999999999999886 468999 9999999999999999999933999999
Q ss_pred HHHHHHhchhChhhHHH
Q 004426 292 LELLSFANRFCCEEMKS 308 (754)
Q Consensus 292 lelL~aA~~f~l~~Lk~ 308 (754)
.+++.+|++|+++.|++
T Consensus 99 ~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 99 DELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHHHTCHHHHT
T ss_pred HHHHHHHHHhCccccCc
Confidence 99999999999999874
No 102
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.72 E-value=1.3e-15 Score=171.57 Aligned_cols=277 Identities=14% Similarity=0.046 Sum_probs=190.1
Q ss_pred hHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhcc-----chHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHH---HH
Q 004426 400 TTVMLLERLGECSTERWQRMLALHQLGCVMFERE-----EYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYS---AY 471 (754)
Q Consensus 400 ~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g-----~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~---A~ 471 (754)
.+..+++++... ...+++++|.++...+ ++++|+.+|++|++.++..++..+|.++...++... +.
T Consensus 56 ~A~~~~~~A~~~------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~ 129 (452)
T 3e4b_A 56 QAEATYRAAADT------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQ 129 (452)
T ss_dssp ---------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHH
T ss_pred HHHHHHHHHHhC------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 444555554322 3457889999666655 889999999999999998999999999988776433 56
Q ss_pred HHHHHHHHccCC-----CHHHHHHhhhcCCh-hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 004426 472 KLINSIISEHKP-----TGWMYQERSLYNLG-REKIVDLNYASELDPTLSFPYKYRAVAKMEEG---QIRAAISEIDRII 542 (754)
Q Consensus 472 ~~~~~aI~~~~~-----~g~ay~~r~~y~~g-~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg---~~~eAl~~~~rAl 542 (754)
..+.++...... +|.+|...+.+... .++...+..|...+|. +++++|.++...| ++++|+..|++++
T Consensus 130 ~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa 206 (452)
T 3e4b_A 130 QQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGV 206 (452)
T ss_dssp HHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 666666544332 45555555433222 3455556677777766 9999999999999 9999999999999
Q ss_pred HcCCC-HHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHH-h--hhhccccchhhhhhhh
Q 004426 543 VFKLS-VDCLELRAWLFIAA----DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL-N--HHVRSWSPADCWIKLY 614 (754)
Q Consensus 543 ~l~p~-~~~~~~ra~~~~~l----gd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l-~--~~~~~~~~A~~~~~l~ 614 (754)
+..|. ...+++.|.+|... +|+++|+..|+++. |++. .+...++.+ . ...+++++
T Consensus 207 ~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~------~a~~~Lg~~~~~~~~~~d~~~-------- 269 (452)
T 3e4b_A 207 SRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP------ASWVSLAQLLYDFPELGDVEQ-------- 269 (452)
T ss_dssp HTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST------HHHHHHHHHHHHSGGGCCHHH--------
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH------HHHHHHHHHHHhCCCCCCHHH--------
Confidence 99885 66668888888666 79999999999998 7663 333333322 1 11222222
Q ss_pred hccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcC-----CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH---
Q 004426 615 DRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN-----CQKAAMRCLRLARNHSSSEHERLVYEGWILYD--- 686 (754)
Q Consensus 615 ~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg-----~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~--- 686 (754)
|+..|+++++ ++++.+++++|.++. .| ++++|+..|++|. |.++++++++|.+++.
T Consensus 270 ----------A~~~~~~Aa~--~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g 333 (452)
T 3e4b_A 270 ----------MMKYLDNGRA--ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYL 333 (452)
T ss_dssp ----------HHHHHHHHHH--TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTT
T ss_pred ----------HHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCC
Confidence 5777888775 458888888888887 55 8888888888888 8888888888876665
Q ss_pred -cCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhc
Q 004426 687 -TGHREEALSRAEKSISIERTFEAFFLKAYILAD 719 (754)
Q Consensus 687 -~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~ 719 (754)
..++++|+..|++|.+.. +.+|.+..|+.+..
T Consensus 334 ~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 334 GKVYPQKALDHLLTAARNG-QNSADFAIAQLFSQ 366 (452)
T ss_dssp SSCCHHHHHHHHHHHHTTT-CTTHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHHhhC-hHHHHHHHHHHHHh
Confidence 338888888888887743 33467777777665
No 103
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=3.4e-15 Score=170.39 Aligned_cols=315 Identities=10% Similarity=-0.000 Sum_probs=220.3
Q ss_pred chhhHHHHHHHhhhchhhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc-hhhhhhHHH-HHHHhCCHHHHHH--
Q 004426 397 VSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH-IYSLAGLAR-AKYKVGQQYSAYK-- 472 (754)
Q Consensus 397 r~~~~v~LLer~vr~~~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~-~~a~~~lar-v~~~~G~~~~A~~-- 472 (754)
+.+.+..++++++...+.. ...+..++......|++++|...|++|+...| ...|..+++ +....|+...|..
T Consensus 27 ~~~~a~~~~e~al~~~P~~---~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~ 103 (530)
T 2ooe_A 27 PIDKARKTYERLVAQFPSS---GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKM 103 (530)
T ss_dssp CHHHHHHHHHHHHTTCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHH
Confidence 4667888898887643432 45677888888889999999999999999854 345555554 3345677766654
Q ss_pred --HHHHHHHc---cCCCHHHHHHhhhc-------------CChhhHHHHHHHHHhhCCCChH--HHHHHHH---------
Q 004426 473 --LINSIISE---HKPTGWMYQERSLY-------------NLGREKIVDLNYASELDPTLSF--PYKYRAV--------- 523 (754)
Q Consensus 473 --~~~~aI~~---~~~~g~ay~~r~~y-------------~~g~eAl~dl~kAi~LdP~~~~--ay~~rg~--------- 523 (754)
.|++++.. +++...+|.....+ +..+.|...|++|++ .|.... .|...+.
T Consensus 104 ~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~ 182 (530)
T 2ooe_A 104 AQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHL 182 (530)
T ss_dssp HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhH
Confidence 67777653 44555555433211 122678888999998 576532 1111000
Q ss_pred ------------------------------------------------------HHHHc------CC----HHHHHHHHH
Q 004426 524 ------------------------------------------------------AKMEE------GQ----IRAAISEID 539 (754)
Q Consensus 524 ------------------------------------------------------~l~~l------g~----~~eAl~~~~ 539 (754)
+..+. ++ .+.|+..|+
T Consensus 183 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~ 262 (530)
T 2ooe_A 183 AKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYE 262 (530)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHH
Confidence 00000 11 136677888
Q ss_pred HHHHcCCC-HHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-cCCCccccccchhhhHHHHHHhhhhcc
Q 004426 540 RIIVFKLS-VDCLELRAWLFIA-------ADDYE-------SALRDTLALLA-LESNYMMFHGRVSGDHLVKLLNHHVRS 603 (754)
Q Consensus 540 rAl~l~p~-~~~~~~ra~~~~~-------lgd~~-------~Al~d~~~al~-l~P~~~~~~~~~~~~~~~~~l~~~~~~ 603 (754)
+||..+|+ ++.|...+.++.. +|+++ +|+..|++|++ ++|++. .+....+.+....++
T Consensus 263 ~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~------~l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 263 QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM------LLYFAYADYEESRMK 336 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH------HHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH------HHHHHHHHHHHhcCC
Confidence 88888885 7888888877765 78876 88888888887 788762 233333323222333
Q ss_pred ccchhhhhhhhhccccccccchHHHHHHHHHcCCCCh-hHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 004426 604 WSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS-FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW 682 (754)
Q Consensus 604 ~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~-~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~ 682 (754)
+++ |..+|+++|+++|.++ .+|.+.|.++.++|+.++|...|++|++..|.+...+...|+
T Consensus 337 ~~~------------------A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 337 YEK------------------VHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 398 (530)
T ss_dssp HHH------------------HHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHH
T ss_pred HHH------------------HHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 333 5889999999999985 699999999999999999999999999999998888888888
Q ss_pred HHH-HcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhccCCCCCchhHHHHHHHHHhc-CCCC
Q 004426 683 ILY-DTGHREEALSRAEKSISIERTFE-AFFLKAYILADTNLDPESSTYVIQLLEEALR-CPSD 743 (754)
Q Consensus 683 ~ly-~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 743 (754)
+.+ ..|++++|...|++|+++.|+.. .+...|..+.. -..-..+..++|.|+. ||.+
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~----~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh----CCCHhhHHHHHHHHHhccCCC
Confidence 754 59999999999999999999876 44444433322 2345678889999986 4543
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.70 E-value=1e-16 Score=148.50 Aligned_cols=120 Identities=13% Similarity=0.044 Sum_probs=105.1
Q ss_pred HHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhcc
Q 004426 539 DRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRW 617 (754)
Q Consensus 539 ~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~ 617 (754)
.|+..++|+ ++.+.++|..+.+.|+|++|+..|+++++++|++
T Consensus 3 ar~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------------ 46 (126)
T 4gco_A 3 ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------------------------------------ 46 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------
T ss_pred hHHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------
Confidence 356678996 7888899999999999999999888887777764
Q ss_pred ccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q 004426 618 SSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRA 697 (754)
Q Consensus 618 ~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~ 697 (754)
+.+|+++|.++.++|++++|+.++++|++++|+++++++++|.+++.+|++++|+..|
T Consensus 47 ----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 104 (126)
T 4gco_A 47 ----------------------AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAY 104 (126)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChH-HHHHHHHH
Q 004426 698 EKSISIERTFE-AFFLKAYI 716 (754)
Q Consensus 698 e~Ai~l~~~~~-a~~~~~~~ 716 (754)
++|++++|++. |....+.+
T Consensus 105 ~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 105 EDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCcCCHHHHHHHHHh
Confidence 99999999988 66555543
No 105
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.70 E-value=1.4e-16 Score=164.19 Aligned_cols=189 Identities=11% Similarity=-0.048 Sum_probs=150.0
Q ss_pred hhHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHH--------cC
Q 004426 498 REKIVDLNYASELDPTL---SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIA--------AD 562 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~---~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~----~~~~~~ra~~~~~--------lg 562 (754)
++|+..|+++++.+|++ +.+++++|.++..+|++++|+..|++++.+.|+ +..++.+|.++.. +|
T Consensus 32 ~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~ 111 (261)
T 3qky_A 32 DRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQT 111 (261)
T ss_dssp HHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCH
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccch
Confidence 77778888888888888 899999999999999999999999999999883 4667889999999 99
Q ss_pred CHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCC---
Q 004426 563 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPG--- 638 (754)
Q Consensus 563 d~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~--- 638 (754)
++++|+..|+++++++|++... ......+....... +..+..++..+...+++. |+..++++++..|.
T Consensus 112 ~~~~A~~~~~~~l~~~p~~~~~------~~a~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 183 (261)
T 3qky_A 112 DTRKAIEAFQLFIDRYPNHELV------DDATQKIRELRAKL--ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW 183 (261)
T ss_dssp HHHHHHHHHHHHHHHCTTCTTH------HHHHHHHHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred hHHHHHHHHHHHHHHCcCchhH------HHHHHHHHHHHHHH--HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch
Confidence 9999999999999999987431 11111111111111 222445555555556666 78999999999999
Q ss_pred ChhHHHhHHHHHHHc----------CCHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHcCCHHHHH
Q 004426 639 KSFLRFRQSLLLLRL----------NCQKAAMRCLRLARNHSSSEH---ERLVYEGWILYDTGHREEAL 694 (754)
Q Consensus 639 ~~~~~~~~g~~L~~l----------g~~eeAl~~~~~Al~l~P~~~---ea~~~~G~~ly~~G~~eeAl 694 (754)
.+.+++++|.++..+ |++++|+..|+++++..|++. ++...++.++..+|+++++.
T Consensus 184 ~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 184 ADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 567999999999988 999999999999999999995 56666777777666665543
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.70 E-value=7.1e-16 Score=156.12 Aligned_cols=190 Identities=9% Similarity=-0.011 Sum_probs=146.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchh
Q 004426 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-V---DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (754)
Q Consensus 514 ~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~---~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~ 589 (754)
.+.+++++|..+++.|++++|+..|+++++..|+ + ..++.+|.++..+|++++|+..|+++++++|++... ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~---~~ 79 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---DY 79 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH---HH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH---HH
Confidence 4678999999999999999999999999999885 2 577889999999999999999999999999987420 01
Q ss_pred hhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHH-----------------HhHHHHHH
Q 004426 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLR-----------------FRQSLLLL 651 (754)
Q Consensus 590 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~-----------------~~~g~~L~ 651 (754)
+...++.+...... .....|.++.......++.+ |+..|+++++.+|+++.++ +.+|.++.
T Consensus 80 a~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~ 158 (225)
T 2yhc_A 80 VMYMRGLTNMALDD-SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYT 158 (225)
T ss_dssp HHHHHHHHHHHHHC---------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh-hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333322221110 01111223333333344555 7889999999999999776 68899999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004426 652 RLNCQKAAMRCLRLARNHSSSEH---ERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (754)
Q Consensus 652 ~lg~~eeAl~~~~~Al~l~P~~~---ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~ 707 (754)
+.|++++|+..|+++++..|+++ ++++.+|.+++.+|++++|++.++++....|+.
T Consensus 159 ~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 159 ERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 99999999999999999999986 789999999999999999999999999888764
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.70 E-value=2.1e-16 Score=182.23 Aligned_cols=159 Identities=9% Similarity=-0.054 Sum_probs=130.5
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++++
T Consensus 6 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 85 (568)
T 2vsy_A 6 PRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85 (568)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999996 78889999999999999999998888888
Q ss_pred cCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCH
Q 004426 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 656 (754)
Q Consensus 577 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~ 656 (754)
++|++ +.+++++|.++..+|++
T Consensus 86 ~~p~~----------------------------------------------------------~~~~~~la~~~~~~g~~ 107 (568)
T 2vsy_A 86 AAPEH----------------------------------------------------------PGIALWLGHALEDAGQA 107 (568)
T ss_dssp HCTTC----------------------------------------------------------HHHHHHHHHHHHHTTCH
T ss_pred cCCCC----------------------------------------------------------HHHHHHHHHHHHHcCCH
Confidence 87764 45678889999999999
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCChH-HHHHHH
Q 004426 657 KAAMRCLRLARNHSSSEHERLVYEGWILYDT---GHREEALSRAEKSISIERTFE-AFFLKA 714 (754)
Q Consensus 657 eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~---G~~eeAl~~~e~Ai~l~~~~~-a~~~~~ 714 (754)
++|+..|++|++++|++.+++.++|.++..+ |++++|++.|+++++++|+.. +|++.+
T Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 108 EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999999999999999999999999 999999999999999998876 776655
No 108
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.70 E-value=4.2e-15 Score=160.58 Aligned_cols=202 Identities=11% Similarity=0.067 Sum_probs=157.9
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQ--IRAAISEIDRIIVFKL-SVDCLELRAWLFIAADD-YESALRDTLA 573 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~--~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd-~~~Al~d~~~ 573 (754)
.+++..+++++..+|.+..+|.+|+.++..+++ ++++++.++++++++| ++.+|..|+++...+|+ +++++..+.+
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 688899999999999999999999999999995 8999999999999999 58999999999999999 6999999999
Q ss_pred HHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccc--cccc-hHHHHHHHHHcCCCChhHHHhHHHHH
Q 004426 574 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSV--DDIG-SLAVINQMLINDPGKSFLRFRQSLLL 650 (754)
Q Consensus 574 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~--~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L 650 (754)
+++.+|++ -.|.+.++.+.........+. ....+ +.+. ++..++++|..+|++..+|+.+.-++
T Consensus 171 ~I~~~p~N------~SAW~~R~~ll~~l~~~~~~~-------~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 171 LITRNFSN------YSSWHYRSCLLPQLHPQPDSG-------PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 237 (331)
T ss_dssp HHHHCSCC------HHHHHHHHHHHHHHSCCC-------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHCCCC------HHHHHHHHHHHHHhhhccccc-------cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999987 444444444433332111100 00000 1122 68899999999999999997554444
Q ss_pred HHc-----------CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCChHHHHH
Q 004426 651 LRL-----------NCQKAAMRCLRLARNHSSSEHERLVYEGWILY---DTGHREEALSRAEKSISIERTFEAFFL 712 (754)
Q Consensus 651 ~~l-----------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly---~~G~~eeAl~~~e~Ai~l~~~~~a~~~ 712 (754)
.+. +..+++++.++++++++|++...+.....+.- ..|..++....+.+.++++|-=.-|+.
T Consensus 238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~ 313 (331)
T 3dss_A 238 GAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 313 (331)
T ss_dssp HSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHH
Confidence 444 45899999999999999999665544443322 368999999999999999998776654
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.69 E-value=1.7e-16 Score=159.01 Aligned_cols=191 Identities=17% Similarity=0.056 Sum_probs=128.4
Q ss_pred hhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Q 004426 454 LAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRA 533 (754)
Q Consensus 454 ~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~e 533 (754)
+...|..++..|++++|+..|.+++...|+.+.++..++.-.. . .. .+..++++|.++..+|++++
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~----------~~---~~~~~~~lg~~~~~~g~~~~ 72 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKN-S----------EI---SSKLATELALAYKKNRNYDK 72 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTT-S----------HH---HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcch-h----------hh---hHHHHHHHHHHHHHCCCHHH
Confidence 3445666667777766666666666666555555544321100 0 00 01223449999999999999
Q ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhh
Q 004426 534 AISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIK 612 (754)
Q Consensus 534 Al~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~ 612 (754)
|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++++++|++..++ ..++.+.......+.+
T Consensus 73 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~------~~lg~~~~~~~~~~~~----- 141 (208)
T 3urz_A 73 AYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAAN------IFLGNYYYLTAEQEKK----- 141 (208)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH------HHHHHHHHHHhHHHHH-----
Confidence 99999999999995 88899999999999999999999999999999985433 2222221111111111
Q ss_pred hhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 004426 613 LYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW 682 (754)
Q Consensus 613 l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~ 682 (754)
.+...+.+++..+| ...+++++|.++..+|++++|+..|++|++++|+. ++..++.-
T Consensus 142 -----------~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~ 198 (208)
T 3urz_A 142 -----------KLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDK 198 (208)
T ss_dssp -----------HHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHH
T ss_pred -----------HHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 12345566554333 23478999999999999999999999999999984 34444443
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.68 E-value=6.7e-17 Score=155.24 Aligned_cols=69 Identities=9% Similarity=-0.118 Sum_probs=47.5
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 640 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
+.+|+++|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+..|++|+++.|+.+
T Consensus 70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 455666666667777777777777777777777777777777777777777777777777777766655
No 111
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.68 E-value=7.8e-16 Score=167.68 Aligned_cols=241 Identities=12% Similarity=-0.021 Sum_probs=148.7
Q ss_pred HHHHHHhhhhhhHhhccchHHHHHHHHHHhhhc--------chhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHH
Q 004426 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADAG--------HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMY 488 (754)
Q Consensus 417 qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~--------~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay 488 (754)
.....++.+|..+...|++++|+..|++|+++. ...++..+|.++..+|++..|+..+.+++...+..+.
T Consensus 99 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-- 176 (378)
T 3q15_A 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL-- 176 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT--
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC--
Confidence 344567789999999999999999999999872 1346778899999999999999988888876532110
Q ss_pred HHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---C----HHHHHHHHHHHHHc
Q 004426 489 QERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL---S----VDCLELRAWLFIAA 561 (754)
Q Consensus 489 ~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p---~----~~~~~~ra~~~~~l 561 (754)
..+..+.++.++|.++..+|++++|+..|++|+.+.+ + ...+.+.|.++..+
T Consensus 177 ---------------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 177 ---------------------YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 0011233445555555555555555555555554421 1 12334455555555
Q ss_pred CCHHHHHHHHHHHHh-----cCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcC
Q 004426 562 DDYESALRDTLALLA-----LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND 636 (754)
Q Consensus 562 gd~~~Al~d~~~al~-----l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~ 636 (754)
|++++|+..|+++++ .+|.. ..+...++.+....+++++| +..+++++++.
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A------------------~~~~~~al~~~ 291 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDLL------PKVLFGLSWTLCKAGQTQKA------------------FQFIEEGLDHI 291 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGGH------HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHhhCChhH------HHHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHHH
Confidence 555555555555555 22221 12222222222222222222 44455555542
Q ss_pred -----CCChhHHHhHHHHHHHcCC---HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 637 -----PGKSFLRFRQSLLLLRLNC---QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 705 (754)
Q Consensus 637 -----P~~~~~~~~~g~~L~~lg~---~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~ 705 (754)
|.....+..++.++...|. .++|+..+++ ....|+..+.+..+|.+++.+|++++|+..|++|+.+..
T Consensus 292 ~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 292 TARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp CTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 2223334455666666777 7788888777 345566778889999999999999999999999998754
No 112
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.68 E-value=1.3e-17 Score=180.47 Aligned_cols=200 Identities=13% Similarity=0.001 Sum_probs=157.5
Q ss_pred hhHhhccchHHHHHHHHH----HhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHH
Q 004426 427 CVMFEREEYKDACYYFEA----AADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIV 502 (754)
Q Consensus 427 ~v~~~~g~~~eA~~~f~~----AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~ 502 (754)
.++...+.+++|+..+.. ++.++|.+++...|.... .. +......+.. .....++|+.
T Consensus 73 ~~~~~~~~~e~al~~~~~Ge~~~l~i~p~~ayg~~g~~~~----------------~i-~~~~~l~f~~-~L~~~~~A~~ 134 (336)
T 1p5q_A 73 ENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKF----------------QI-PPNAELKYEL-HLKSFEKAKE 134 (336)
T ss_dssp GGGTCCHHHHHHHTTCCTTCEEEEEECTTTTTTTTCBGGG----------------TB-CSSCCEEEEE-EEEEEECCCC
T ss_pred CccccchHHHHHHhcCCCCCeEEEEECCccccCcCCCCcc----------------CC-CCCCeEEEEE-EEeecccccc
Confidence 444456678888888877 777766654443332110 01 1110000000 0011267778
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH----------------HHHHHHHHHHHHcCCHHH
Q 004426 503 DLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV----------------DCLELRAWLFIAADDYES 566 (754)
Q Consensus 503 dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~----------------~~~~~ra~~~~~lgd~~~ 566 (754)
.|+++++.+|+++.+|+++|.++..+|++++|+..|++|++++|+. .++.++|.++..+|++++
T Consensus 135 ~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~ 214 (336)
T 1p5q_A 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA 214 (336)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 8899999999999999999999999999999999999999999963 788899999999999999
Q ss_pred HHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhH
Q 004426 567 ALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQ 646 (754)
Q Consensus 567 Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~ 646 (754)
|+..|++|++++|++ +.+|+++
T Consensus 215 A~~~~~~al~~~p~~----------------------------------------------------------~~a~~~l 236 (336)
T 1p5q_A 215 AIESCNKALELDSNN----------------------------------------------------------EKGLSRR 236 (336)
T ss_dssp HHHHHHHHHHHCTTC----------------------------------------------------------HHHHHHH
T ss_pred HHHHHHHHHHhCCCc----------------------------------------------------------HHHHHHH
Confidence 999888888887765 4678999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 004426 647 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEA-LSRAEKSIS 702 (754)
Q Consensus 647 g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeA-l~~~e~Ai~ 702 (754)
|.++..+|++++|+..|++|++++|++.+++.++|.++..+|++++| -..|++.+.
T Consensus 237 g~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 237 GEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 456777664
No 113
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.67 E-value=3.8e-16 Score=159.24 Aligned_cols=183 Identities=14% Similarity=0.061 Sum_probs=150.8
Q ss_pred hhHHHHHHHHHh-------hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHH
Q 004426 498 REKIVDLNYASE-------LD-PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK--------LS-VDCLELRAWLFIA 560 (754)
Q Consensus 498 ~eAl~dl~kAi~-------Ld-P~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~--------p~-~~~~~~ra~~~~~ 560 (754)
++|+..|++|++ .+ |..+.++.++|.++..+|++++|+..|++++++. |. ...+..+|.++..
T Consensus 18 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (283)
T 3edt_B 18 GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 445555555555 34 7889999999999999999999999999999983 33 5667889999999
Q ss_pred cCCHHHHHHHHHHHHhcC--------CCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHH
Q 004426 561 ADDYESALRDTLALLALE--------SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQM 632 (754)
Q Consensus 561 lgd~~~Al~d~~~al~l~--------P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~a 632 (754)
+|++++|+..|++++++. |+. ..+...++.+.....++++ |+..++++
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~------------------A~~~~~~a 153 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVLGKFHPDV------AKQLNNLALLCQNQGKAEE------------------VEYYYRRA 153 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHH------HHHHHHHHHHHHTTTCHHH------------------HHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCChHH------HHHHHHHHHHHHHcCCHHH------------------HHHHHHHH
Confidence 999999999999999983 432 2333434433333344444 58899999
Q ss_pred HHc--------CCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhc-----------------------------------
Q 004426 633 LIN--------DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH----------------------------------- 669 (754)
Q Consensus 633 L~l--------~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l----------------------------------- 669 (754)
+++ +|..+.+++++|.++..+|++++|+..+++++++
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (283)
T 3edt_B 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP 233 (283)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH
Confidence 999 8889999999999999999999999999999986
Q ss_pred --------------CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 670 --------------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (754)
Q Consensus 670 --------------~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~ 704 (754)
.|+.+.++.++|.++..+|++++|+..|++|+++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 234 YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp ---------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 36678899999999999999999999999999874
No 114
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.67 E-value=3.6e-15 Score=161.87 Aligned_cols=177 Identities=11% Similarity=0.003 Sum_probs=151.5
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHc-C-CHHHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEG-QIRAAISEIDRIIVFKLS-VDCLELRAWLFIAA-D-DYESALRDTLA 573 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg-~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~l-g-d~~~Al~d~~~ 573 (754)
.+|+..+++++.+||++..+|++|+.++..+| ++++++..++++|..+|+ +.+|+.|++++..+ + ++++++..+++
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 68999999999999999999999999999999 599999999999999995 89999999999988 8 99999999999
Q ss_pred HHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHc
Q 004426 574 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL 653 (754)
Q Consensus 574 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~l 653 (754)
+++++|++.. +.+.++-+......++.+.. . .-.+++..++++|+.+|+|..+|++|+.++.++
T Consensus 151 ~L~~dpkNy~------AW~~R~wvl~~l~~~~~~~~--~--------~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 151 SLLPDPKNYH------TWAYLHWLYSHFSTLGRISE--A--------QWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HTSSCTTCHH------HHHHHHHHHHHHHHTTCCCH--H--------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred HHHhCCCCHH------HHHHHHHHHHHhccccccch--h--------hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 9999999843 44444433333333442100 0 001258899999999999999999999999999
Q ss_pred CC-------HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCH
Q 004426 654 NC-------QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHR 690 (754)
Q Consensus 654 g~-------~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~ 690 (754)
++ .+++++.+++++.++|+|..+.+|+.+++...|+-
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 98 79999999999999999999999999999998874
No 115
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.67 E-value=7.7e-17 Score=169.96 Aligned_cols=197 Identities=12% Similarity=0.038 Sum_probs=154.8
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHH-----------------
Q 004426 498 REKIVDLNYASELDPTLSFPYKYR-------AVAKMEEGQIRAAISEIDRIIVFKLS-VDCLE----------------- 552 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~r-------g~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~----------------- 552 (754)
..|...|.+|+++||+.+++|.+| +.++..++++.+|+..+++++++.|+ ...++
T Consensus 23 ~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~ 102 (282)
T 4f3v_A 23 ARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPL 102 (282)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHH
T ss_pred HHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHh
Confidence 677888888888888888888888 78888888888888888888887774 22222
Q ss_pred ----HHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHH
Q 004426 553 ----LRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV 628 (754)
Q Consensus 553 ----~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~ 628 (754)
..+.++...|+|++|...|+.++..+|++ . +.+.++.+....++|++| +..
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~------~-~~~~~a~l~~~~~r~~dA------------------~~~ 157 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEH------L-VAWMKAVVYGAAERWTDV------------------IDQ 157 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH------H-HHHHHHHHHHHTTCHHHH------------------HHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch------H-HHHHHHHHHHHcCCHHHH------------------HHH
Confidence 25567888888888888888888888865 4 666677777777777777 455
Q ss_pred HHHHHHcC-CCC-hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcC--CC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 629 INQMLIND-PGK-SFLRFRQSLLLLRLNCQKAAMRCLRLARNHS--SS-EHERLVYEGWILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 629 ~~~aL~l~-P~~-~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~--P~-~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
+++++... |.. ..+++++|.++..+|++++|++.|++|+.-. |. ..++++++|++|..+|+.+||...|++++++
T Consensus 158 l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 158 VKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55554432 211 4589999999999999999999999999655 66 7899999999999999999999999999999
Q ss_pred CCChHHHHHHHHHhhccCCC
Q 004426 704 ERTFEAFFLKAYILADTNLD 723 (754)
Q Consensus 704 ~~~~~a~~~~~~~~~~~~~~ 723 (754)
+|+ ++- .-+|.|.+.=
T Consensus 238 ~P~-~~~---~~aL~~~~~~ 253 (282)
T 4f3v_A 238 HPE-PKV---AAALKDPSYR 253 (282)
T ss_dssp SCC-HHH---HHHHHCTTCC
T ss_pred CCc-HHH---HHHHhCCCCC
Confidence 999 531 2245565543
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.67 E-value=2.2e-16 Score=171.44 Aligned_cols=190 Identities=12% Similarity=0.036 Sum_probs=164.5
Q ss_pred HHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcccc
Q 004426 507 ASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAAD-DYESALRDTLALLALESNYMMF 584 (754)
Q Consensus 507 Ai~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lg-d~~~Al~d~~~al~l~P~~~~~ 584 (754)
.|.+.|++..++.++..++...+..++|+..++++|.++|+ +.+|+.|+.++..+| ++++++..++++++.+|++.
T Consensus 46 ~i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny-- 123 (349)
T 3q7a_A 46 PIMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY-- 123 (349)
T ss_dssp CBCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH--
T ss_pred eeeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH--
Confidence 56778888899999999999999999999999999999996 899999999999999 59999999999999999984
Q ss_pred ccchhhhHHHHHHhhhh-c-cccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHH-----
Q 004426 585 HGRVSGDHLVKLLNHHV-R-SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK----- 657 (754)
Q Consensus 585 ~~~~~~~~~~~~l~~~~-~-~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~e----- 657 (754)
.+.+.++.+.... . .++ +++..++++|+.+|.|..+|+.|+.++.++|+++
T Consensus 124 ----~aW~hR~wlL~~l~~~~~~------------------~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 124 ----QVWHHRLLLLDRISPQDPV------------------SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp ----HHHHHHHHHHHHHCCSCCH------------------HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred ----HHHHHHHHHHHHhcCCChH------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchh
Confidence 3333333333222 2 222 2589999999999999999999999999999988
Q ss_pred ---HHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC-------HHHHHHHHHHHHhcCCChH-HHHHHHHHhhcc
Q 004426 658 ---AAMRCLRLARNHSSSEHERLVYEGWILYDTGH-------REEALSRAEKSISIERTFE-AFFLKAYILADT 720 (754)
Q Consensus 658 ---eAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~-------~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~~ 720 (754)
++++.++++++.+|.|..|..++|+++..+|+ ++++++.++++|.++|+++ |++.+...+...
T Consensus 182 ~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 182 QWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998 8999999999999999999 776655555443
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.65 E-value=6.1e-16 Score=148.51 Aligned_cols=114 Identities=19% Similarity=0.187 Sum_probs=107.1
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 503 DLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 503 dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
.|.++++++|+++.+++++|.++.++|++++|+..|++++.++|+ +..|+++|.++..+|++++|+..|+++++++|++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 468899999999999999999999999999999999999999995 8999999999999999999999888888888865
Q ss_pred cccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHH
Q 004426 582 MMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMR 661 (754)
Q Consensus 582 ~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~ 661 (754)
+.+|+++|.++.++|++++|+.
T Consensus 104 ----------------------------------------------------------~~~~~~lg~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 104 ----------------------------------------------------------YTPVFHTGQCQLRLKAPLKAKE 125 (151)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------------------------------------------cHHHHHHHHHHHHcCCHHHHHH
Confidence 5789999999999999999999
Q ss_pred HHHHHHhcCCCch
Q 004426 662 CLRLARNHSSSEH 674 (754)
Q Consensus 662 ~~~~Al~l~P~~~ 674 (754)
.|++|++++|+..
T Consensus 126 ~~~~al~l~~~~~ 138 (151)
T 3gyz_A 126 CFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCHH
Confidence 9999999999976
No 118
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=2.1e-15 Score=156.43 Aligned_cols=253 Identities=13% Similarity=0.009 Sum_probs=171.4
Q ss_pred HHHHHHHHhhhhcchhhHHHHHHHhhhchh-----hhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhc--------c
Q 004426 384 YYFLSQVAMEKDRVSNTTVMLLERLGECST-----ERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG--------H 450 (754)
Q Consensus 384 ~a~LswV~~d~~~r~~~~v~LLer~vr~~~-----~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~--------~ 450 (754)
+..++.+...... .+.+..++++++.... .......++..+|.++...|++++|+..|++++.+. +
T Consensus 30 ~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 30 LHNLVIQYASQGR-YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4455555544433 6677778877765421 233456778999999999999999999999999872 1
Q ss_pred --hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 004426 451 --IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEE 528 (754)
Q Consensus 451 --~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~l 528 (754)
..++..+|.++...|++++|...+.+++...... .-.-+|....++.++|.++..+
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~----------------------~~~~~~~~~~~~~~la~~~~~~ 166 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV----------------------LGKDHPDVAKQLNNLALLCQNQ 166 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH----------------------HCTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh----------------------cCCCChHHHHHHHHHHHHHHHc
Confidence 2356677888888888877777666665442100 0011355678899999999999
Q ss_pred CCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc---cccchhhhHHHHH
Q 004426 529 GQIRAAISEIDRIIVF--------KLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMM---FHGRVSGDHLVKL 596 (754)
Q Consensus 529 g~~~eAl~~~~rAl~l--------~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~---~~~~~~~~~~~~~ 596 (754)
|++++|+..|++++.+ +|. ...+..+|.++..+|++++|+..|++++++.|+... -............
T Consensus 167 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 246 (311)
T 3nf1_A 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEE 246 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999999999999998 554 566788999999999999999999999987654210 0000111222222
Q ss_pred Hhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 597 LNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS 672 (754)
Q Consensus 597 l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~ 672 (754)
+......... ...+. +...+.+++..+|..+.+++++|.++.++|++++|+..+++|+++.|+
T Consensus 247 ~~~~~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 247 REECKGKQKD-------------GTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHC--------------------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHhcCchhh-------------HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 2222222222 23333 567889999999999999999999999999999999999999999886
No 119
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.65 E-value=3e-15 Score=142.61 Aligned_cols=155 Identities=8% Similarity=0.070 Sum_probs=128.5
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|+ +..+..++.++...|++++|+..|+++++
T Consensus 25 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 104 (186)
T 3as5_A 25 SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE 104 (186)
T ss_dssp HHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 67777788888888888899999999999999999999999999999885 77788888899999999999999999999
Q ss_pred cCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCH
Q 004426 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 656 (754)
Q Consensus 577 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~ 656 (754)
++|++. .+....+.+....+++++ |+..++++++.+|.++.+++++|.++..+|++
T Consensus 105 ~~~~~~------~~~~~~a~~~~~~~~~~~------------------A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 105 ANPINF------NVRFRLGVALDNLGRFDE------------------AIDSFKIALGLRPNEGKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HCTTCH------HHHHHHHHHHHHTTCHHH------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred cCcHhH------HHHHHHHHHHHHcCcHHH------------------HHHHHHHHHhcCccchHHHHHHHHHHHHcCCH
Confidence 998762 233333333333333333 47789999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchhH
Q 004426 657 KAAMRCLRLARNHSSSEHER 676 (754)
Q Consensus 657 eeAl~~~~~Al~l~P~~~ea 676 (754)
++|+..++++++++|++...
T Consensus 161 ~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 161 EEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHHHcCCCchhh
Confidence 99999999999999998754
No 120
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.64 E-value=1.8e-15 Score=164.68 Aligned_cols=205 Identities=10% Similarity=-0.029 Sum_probs=158.6
Q ss_pred hhHHHHHHHHHhh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------HHHHHHHHHHHHHcCC
Q 004426 498 REKIVDLNYASEL------DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS--------VDCLELRAWLFIAADD 563 (754)
Q Consensus 498 ~eAl~dl~kAi~L------dP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~--------~~~~~~ra~~~~~lgd 563 (754)
++|+..|.+|+++ +|..+.+|.++|.++..+|++++|+..+++|+++.+. ..++.+.|.++..+|+
T Consensus 120 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 199 (383)
T 3ulq_A 120 LSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQ 199 (383)
T ss_dssp HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcC
Confidence 4444555555554 3335688999999999999999999999999998442 3467789999999999
Q ss_pred HHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHH-----cC-C
Q 004426 564 YESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI-----ND-P 637 (754)
Q Consensus 564 ~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~-----l~-P 637 (754)
+++|+..|++|+++.|+...-.+...+...++.+....+++++| +..++++++ .+ |
T Consensus 200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A------------------~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 200 YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA------------------IPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHHHHhhccch
Confidence 99999999999999876532222333445455444444444444 889999999 57 9
Q ss_pred CChhHHHhHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCChH-
Q 004426 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH-----SSSEHERLVYEGWILYDTGH---REEALSRAEKSISIERTFE- 708 (754)
Q Consensus 638 ~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l-----~P~~~ea~~~~G~~ly~~G~---~eeAl~~~e~Ai~l~~~~~- 708 (754)
..+.+++++|.++.++|++++|+..+++|+++ +|.....+.++|.++...|+ +++|+..++++ ...|...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~ 340 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLED 340 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHH
Confidence 99999999999999999999999999999999 45555557889999999999 99999999888 3333333
Q ss_pred HHHHHHHHhhccC
Q 004426 709 AFFLKAYILADTN 721 (754)
Q Consensus 709 a~~~~~~~~~~~~ 721 (754)
++...|.++....
T Consensus 341 ~~~~la~~y~~~g 353 (383)
T 3ulq_A 341 FAIDVAKYYHERK 353 (383)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
Confidence 7777777776654
No 121
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.63 E-value=2.1e-17 Score=178.83 Aligned_cols=178 Identities=14% Similarity=0.066 Sum_probs=152.5
Q ss_pred hhHHHHHHH----HHhhCCCChHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHH
Q 004426 498 REKIVDLNY----ASELDPTLSFPYKYRAVAKM------------EEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIA 560 (754)
Q Consensus 498 ~eAl~dl~k----Ai~LdP~~~~ay~~rg~~l~------------~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~ 560 (754)
++|+..+++ ++.++|++ +|.++|.... .++++++|+..|++++..+|+ +..+..+|.++..
T Consensus 82 e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~ 159 (336)
T 1p5q_A 82 ERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK 159 (336)
T ss_dssp HHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 555556666 77777776 6666665553 678899999999999999996 7888999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCCh
Q 004426 561 ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS 640 (754)
Q Consensus 561 lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~ 640 (754)
+|++++|+..|++|++++|++..+ + .++..+++|..+
T Consensus 160 ~g~~~~A~~~y~~Al~~~p~~~~~------------------------------------~-------~~~~~~~~~~~~ 196 (336)
T 1p5q_A 160 EGKYKQALLQYKKIVSWLEYESSF------------------------------------S-------NEEAQKAQALRL 196 (336)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCCCC------------------------------------C-------SHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhccccC------------------------------------C-------hHHHHHHHHHHH
Confidence 999999999999999999987310 0 134455666678
Q ss_pred hHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhc
Q 004426 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILAD 719 (754)
Q Consensus 641 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~ 719 (754)
.+|+++|.++.++|++++|+..|++|++++|+++.+++++|.+++.+|++++|+..|++|++++|++. ++++.|.++..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999987 88888877654
Q ss_pred c
Q 004426 720 T 720 (754)
Q Consensus 720 ~ 720 (754)
.
T Consensus 277 ~ 277 (336)
T 1p5q_A 277 I 277 (336)
T ss_dssp H
T ss_pred H
Confidence 3
No 122
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.63 E-value=8.8e-16 Score=163.21 Aligned_cols=207 Identities=12% Similarity=0.016 Sum_probs=159.6
Q ss_pred hccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhh
Q 004426 431 EREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASEL 510 (754)
Q Consensus 431 ~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~L 510 (754)
..|++++|.+.+++|.+.... .++. ..|+++.|...|.++ |.+|...+.+ ++|+..|.+|+++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~~~~------~~~~~~~A~~~~~~a-------~~~~~~~g~~---~~A~~~~~~al~~ 65 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-SFMK------WKPDYDSAASEYAKA-------AVAFKNAKQL---EQAKDAYLQEAEA 65 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-CSSS------CSCCHHHHHHHHHHH-------HHHHHHTTCH---HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-cccC------CCCCHHHHHHHHHHH-------HHHHHHcCCH---HHHHHHHHHHHHH
Confidence 468899999999988876332 1111 147888888888876 4456666555 8888888888888
Q ss_pred CCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 511 DPTL------SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-------VDCLELRAWLFIAADDYESALRDTLALLAL 577 (754)
Q Consensus 511 dP~~------~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-------~~~~~~ra~~~~~lgd~~~Al~d~~~al~l 577 (754)
.+.. +.+|.++|.++..+|++++|+..|++|+++.+. ...+.+.|.+|.. |++++|+..|++|+++
T Consensus 66 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 7654 568888888888888888888888888888431 2455677788888 8888888888888888
Q ss_pred CCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHH
Q 004426 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 657 (754)
Q Consensus 578 ~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~e 657 (754)
.|+.- +. +..+.+++++|.++..+|+++
T Consensus 145 ~~~~~---------------------------------------~~-------------~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 145 FENEE---------------------------------------RL-------------RQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp HHHTT---------------------------------------CH-------------HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhCC---------------------------------------Ch-------------hHHHHHHHHHHHHHHHcCCHH
Confidence 77530 00 011456888999999999999
Q ss_pred HHHHHHHHHHhcCCCch------hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 658 AAMRCLRLARNHSSSEH------ERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 658 eAl~~~~~Al~l~P~~~------ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
+|+..|++|+++.|++. .++.++|.+++.+|++++|+..|++++ ++|+|.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 99999999999877653 478889999999999999999999999 999764
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=3.1e-15 Score=173.45 Aligned_cols=174 Identities=11% Similarity=0.097 Sum_probs=150.4
Q ss_pred HHHHcCC-HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCccccccchhhh
Q 004426 524 AKMEEGQ-IRAAISEIDRIIVFKLS-VDCLELRAWLFIAADD----------YESALRDTLALLALESNYMMFHGRVSGD 591 (754)
Q Consensus 524 ~l~~lg~-~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd----------~~~Al~d~~~al~l~P~~~~~~~~~~~~ 591 (754)
.+++.|. .++|++.++++|+++|+ +.+|+.|+.++..+|+ +++|+..++++++.+|++. .+.
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y------~aW 110 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY------GTW 110 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH------HHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH------HHH
Confidence 4445554 56889999999999996 8999999999999999 9999999999999999984 333
Q ss_pred HHHHHHhhhhc--cccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcC-CHHHHHHHHHHHHh
Q 004426 592 HLVKLLNHHVR--SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN-CQKAAMRCLRLARN 668 (754)
Q Consensus 592 ~~~~~l~~~~~--~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg-~~eeAl~~~~~Al~ 668 (754)
+.++-+..... +|++ ++.+++++|++||.+..+|++|+.++..+| .+++|++.+.++++
T Consensus 111 ~hR~w~l~~l~~~~~~~------------------el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 111 HHRCWLLSRLPEPNWAR------------------ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp HHHHHHHHTCSSCCHHH------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHcccccHHH------------------HHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 33333333322 2222 599999999999999999999999999999 99999999999999
Q ss_pred cCCCchhHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhccC
Q 004426 669 HSSSEHERLVYEGWILYDT--------------GHREEALSRAEKSISIERTFE-AFFLKAYILADTN 721 (754)
Q Consensus 669 l~P~~~ea~~~~G~~ly~~--------------G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~~~ 721 (754)
.+|+|..|++++|.++..+ +.+++|++.+++||.++|+++ |++.++..+....
T Consensus 173 ~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 173 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred HCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 9999999999999999986 678999999999999999999 9999999997654
No 124
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.62 E-value=4.6e-14 Score=152.39 Aligned_cols=263 Identities=12% Similarity=-0.006 Sum_probs=192.7
Q ss_pred hhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCH-----HHHHHhhh----cCChhhHHHHHHHHHhhCCCChH------H
Q 004426 453 SLAGLARAKYKVGQQYSAYKLINSIISEHKPTG-----WMYQERSL----YNLGREKIVDLNYASELDPTLSF------P 517 (754)
Q Consensus 453 a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g-----~ay~~r~~----y~~g~eAl~dl~kAi~LdP~~~~------a 517 (754)
....+|.++...|++++|...+.+++...+... .++...+. .+..++|...+.+|+++.|+... +
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344567788899999999999999998876432 13333331 13338999999999999877643 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccch
Q 004426 518 YKYRAVAKMEEGQIRAAISEIDRIIVFK--------LS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 588 (754)
Q Consensus 518 y~~rg~~l~~lg~~~eAl~~~~rAl~l~--------p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~ 588 (754)
+.++|.++..+|++++|+..+++++++. |. ...+.++|.++..+|++++|+..+++++++.|...... ..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~ 174 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QL 174 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HH
Confidence 7899999999999999999999999985 32 34556789999999999999999999999998753211 22
Q ss_pred hhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCC--ChhHHH-----hHHHHHHHcCCHHHHHH
Q 004426 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG--KSFLRF-----RQSLLLLRLNCQKAAMR 661 (754)
Q Consensus 589 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~--~~~~~~-----~~g~~L~~lg~~eeAl~ 661 (754)
.+...++.+.....++++| +..+++++++.+. .+..+. .++.++...|++++|.+
T Consensus 175 ~~~~~la~~~~~~g~~~~A------------------~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 236 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNA------------------RSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAAN 236 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444444444455555555 7788999887433 322222 34556889999999999
Q ss_pred HHHHHHhcCCCc----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------h-HHHHHHHHHhhccCCCCCchhHH
Q 004426 662 CLRLARNHSSSE----HERLVYEGWILYDTGHREEALSRAEKSISIERT------F-EAFFLKAYILADTNLDPESSTYV 730 (754)
Q Consensus 662 ~~~~Al~l~P~~----~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~------~-~a~~~~~~~~~~~~~~~~~~~~~ 730 (754)
.++++++..|.+ ..++.++|.++..+|++++|+..+++++.+.+. . +++.+.|.++.... ....-
T Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A 312 (373)
T 1hz4_A 237 WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG----RKSDA 312 (373)
T ss_dssp HHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----CHHHH
T ss_pred HHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhC----CHHHH
Confidence 999999988764 335789999999999999999999999988543 1 37777777776554 12333
Q ss_pred HHHHHHHh
Q 004426 731 IQLLEEAL 738 (754)
Q Consensus 731 ~~~~~~~~ 738 (754)
+..+++|+
T Consensus 313 ~~~l~~al 320 (373)
T 1hz4_A 313 QRVLLDAL 320 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44455544
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.62 E-value=9.7e-15 Score=144.49 Aligned_cols=144 Identities=10% Similarity=0.062 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHH
Q 004426 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 594 (754)
Q Consensus 515 ~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~ 594 (754)
+..++++|.++...|++++|+..|++++ +|++..++++|.++..+|++++|+..|+++++++|++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------- 70 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------------- 70 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------------
Confidence 3467899999999999999999999996 7788889999999999999999999888888777764
Q ss_pred HHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 004426 595 KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 674 (754)
Q Consensus 595 ~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 674 (754)
+.+++++|.++..+|++++|+..|++|+++.|++.
T Consensus 71 ---------------------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 71 ---------------------------------------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred ---------------------------------------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 45688899999999999999999999999888877
Q ss_pred ----------------hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhh
Q 004426 675 ----------------ERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILA 718 (754)
Q Consensus 675 ----------------ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~ 718 (754)
++++++|.+++.+|++++|+..|++|+++.|+.. +...+++..-
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 166 (213)
T 1hh8_A 106 LIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV 166 (213)
T ss_dssp EEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred HHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHHHH
Confidence 9999999999999999999999999999999875 5555555543
No 126
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.62 E-value=2.5e-15 Score=153.20 Aligned_cols=237 Identities=14% Similarity=0.029 Sum_probs=159.5
Q ss_pred hhhHHHHHHHhhhchh-----hhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhhc--------c--hhhhhhHHHHHH
Q 004426 398 SNTTVMLLERLGECST-----ERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG--------H--IYSLAGLARAKY 462 (754)
Q Consensus 398 ~~~~v~LLer~vr~~~-----~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~--------~--~~a~~~larv~~ 462 (754)
.+.+..+++++++... +......++..+|.++...|++++|+..|++++++. + ..++..+|.++.
T Consensus 17 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (283)
T 3edt_B 17 RGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG 96 (283)
T ss_dssp SSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 4457777777665321 223345677788888888888888888888887662 1 234556666676
Q ss_pred HhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHH-hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 463 KVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYAS-ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRI 541 (754)
Q Consensus 463 ~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi-~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rA 541 (754)
.+|++++|...+.+++.... +.. .-+|....+|.++|.++..+|++++|+..|+++
T Consensus 97 ~~g~~~~A~~~~~~al~~~~-----------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 97 KRGKYKEAEPLCKRALEIRE-----------------------KVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp TTTCHHHHHHHHHHHHHHHH-----------------------HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHH-----------------------HHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67766655555554443321 000 014777899999999999999999999999999
Q ss_pred HHc--------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc---cccchhhhHHHHHHhhhhccccchhh
Q 004426 542 IVF--------KLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMM---FHGRVSGDHLVKLLNHHVRSWSPADC 609 (754)
Q Consensus 542 l~l--------~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~---~~~~~~~~~~~~~l~~~~~~~~~A~~ 609 (754)
+++ .|. ...+.++|.++..+|++++|+..|++++++.|.... ...........+...........+.
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 232 (283)
T 3edt_B 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA- 232 (283)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH-
Confidence 999 554 567788999999999999999999999998654311 1111223333333333333333332
Q ss_pred hhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 610 WIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS 670 (754)
Q Consensus 610 ~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~ 670 (754)
.+. +...+.......|..+.++.++|.++..+|++++|+..+++|+++.
T Consensus 233 ------------~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 233 ------------PYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp ----------------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 111 2223444444668888999999999999999999999999999864
No 127
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.61 E-value=3.2e-15 Score=158.89 Aligned_cols=209 Identities=13% Similarity=0.073 Sum_probs=158.2
Q ss_pred ccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCC------HHHHHHhhhc----CChhhHH
Q 004426 432 REEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPT------GWMYQERSLY----NLGREKI 501 (754)
Q Consensus 432 ~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~------g~ay~~r~~y----~~g~eAl 501 (754)
.+++++|...|.++ +.++..+|++++|...+.+++...+.. +.+|.+.+.. +..++|+
T Consensus 29 ~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 96 (307)
T 2ifu_A 29 KPDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAV 96 (307)
T ss_dssp SCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGH
T ss_pred CCCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 58899999999875 446788999999999999998876432 3344444321 2339999
Q ss_pred HHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHcCCHHHHH
Q 004426 502 VDLNYASELDPTL------SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-------VDCLELRAWLFIAADDYESAL 568 (754)
Q Consensus 502 ~dl~kAi~LdP~~------~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-------~~~~~~ra~~~~~lgd~~~Al 568 (754)
..|++|+++.+.. +.+|.++|.++.. |++++|+..|++|+++.|. ..++.+.|.++..+|++++|+
T Consensus 97 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 175 (307)
T 2ifu_A 97 QYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAA 175 (307)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999996543 5789999999999 9999999999999999762 356778999999999999999
Q ss_pred HHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHH
Q 004426 569 RDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSL 648 (754)
Q Consensus 569 ~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~ 648 (754)
..|++++++.|++.. . +....+++++|.
T Consensus 176 ~~~~~al~~~~~~~~---------------------------------------~-------------~~~~~~~~~~g~ 203 (307)
T 2ifu_A 176 ASLQKEKSMYKEMEN---------------------------------------Y-------------PTCYKKCIAQVL 203 (307)
T ss_dssp HHHHHHHHHHHHTTC---------------------------------------H-------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC---------------------------------------h-------------hHHHHHHHHHHH
Confidence 999999999997510 0 011346888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchhH-----HHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCh
Q 004426 649 LLLRLNCQKAAMRCLRLARNHSSSEHER-----LVYEGWILYDTGHREEALS--RAEKSISIERTF 707 (754)
Q Consensus 649 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea-----~~~~G~~ly~~G~~eeAl~--~~e~Ai~l~~~~ 707 (754)
++..+|++++|+..|++++ ++|+.... +..++.+ +..|+.++.-. .|.....++|..
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~-~~~~d~~~~~~~~~~~~~~~ld~~~ 267 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQA-YDEQDEEQLLRVCRSPLVTYMDNDY 267 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHH-HHTTCHHHHHHHTTSHHHHTSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHH-HHhcCHHHHHHHHhCchhhhhhHHH
Confidence 9999999999999999999 99987654 2333332 46677543322 244444444433
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.60 E-value=7.5e-15 Score=139.57 Aligned_cols=121 Identities=13% Similarity=0.024 Sum_probs=97.0
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 503 DLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 503 dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
.|.++++++|+++.+++++|.++...|++++|+..|++++.++|+ +..++++|.++..+|++++|+..|+++++++|++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 467888888888888888888888888888888888888888884 7777888888888888888888777777777654
Q ss_pred cccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHH
Q 004426 582 MMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMR 661 (754)
Q Consensus 582 ~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~ 661 (754)
+.+++++|.++..+|++++|+.
T Consensus 89 ----------------------------------------------------------~~~~~~lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 89 ----------------------------------------------------------PRFPFHAAECLLQXGELAEAES 110 (148)
T ss_dssp ----------------------------------------------------------THHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------------------------------------------chHHHHHHHHHHHcCCHHHHHH
Confidence 4567788888888888888888
Q ss_pred HHHHHHhcCCCchhHHHHHH
Q 004426 662 CLRLARNHSSSEHERLVYEG 681 (754)
Q Consensus 662 ~~~~Al~l~P~~~ea~~~~G 681 (754)
.|++|++++|++++....+.
T Consensus 111 ~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 111 GLFLAQELIANXPEFXELST 130 (148)
T ss_dssp HHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHCcCCCcchHHHH
Confidence 88888888888776644333
No 129
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.60 E-value=1.9e-15 Score=145.93 Aligned_cols=115 Identities=14% Similarity=0.085 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-------------VDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 515 ~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-------------~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
+..+.++|+.+..+|+|++|+..|++||+++|+ ..+|.++|.++..+|+|++|+.+|++||++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l---- 86 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY---- 86 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence 567899999999999999999999999999997 128899999999999999999999999875
Q ss_pred cccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHH----HhHHHHHHHcCCHH
Q 004426 582 MMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR----FRQSLLLLRLNCQK 657 (754)
Q Consensus 582 ~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~----~~~g~~L~~lg~~e 657 (754)
|+++++++|+++.+| +|+|.+|..+|+++
T Consensus 87 -----------------------------------------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~e 119 (159)
T 2hr2_A 87 -----------------------------------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGA 119 (159)
T ss_dssp -----------------------------------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -----------------------------------------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHH
Confidence 466677788888888 99999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHH
Q 004426 658 AAMRCLRLARNHSSSEHERLVYE 680 (754)
Q Consensus 658 eAl~~~~~Al~l~P~~~ea~~~~ 680 (754)
||+.+|++|++++|+++.+.--+
T Consensus 120 EAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 120 EAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999999988765433
No 130
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.60 E-value=1.6e-14 Score=146.05 Aligned_cols=172 Identities=15% Similarity=0.076 Sum_probs=130.4
Q ss_pred hhHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-H---HHHHHHHHHHHH----------
Q 004426 498 REKIVDLNYASELDPTLS---FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-V---DCLELRAWLFIA---------- 560 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~---~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~---~~~~~ra~~~~~---------- 560 (754)
++|+..|+++++.+|+.. .+++++|.++..+|++++|+..|+++++++|+ + .+++.+|.++..
T Consensus 21 ~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 100 (225)
T 2yhc_A 21 RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFF 100 (225)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 667777777777777764 68999999999999999999999999999995 3 367788887765
Q ss_pred --------cCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHH
Q 004426 561 --------ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQ 631 (754)
Q Consensus 561 --------lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~ 631 (754)
+|++++|+..|+++++.+|++..+.. +......+... . +.....++..+...+++. |+..+++
T Consensus 101 ~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~---a~~~l~~~~~~---~--~~~~~~~a~~~~~~~~~~~A~~~~~~ 172 (225)
T 2yhc_A 101 GVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD---ATKRLVFLKDR---L--AKYEYSVAEYYTERGAWVAVVNRVEG 172 (225)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCTTCTTHHH---HHHHHHHHHHH---H--HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH---HHHHHHHHHHH---H--HHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 68999999999999999999853210 11111111111 1 111122333333345555 7899999
Q ss_pred HHHcCCCCh---hHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHH
Q 004426 632 MLINDPGKS---FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 677 (754)
Q Consensus 632 aL~l~P~~~---~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 677 (754)
+++..|+++ ++++++|.++.++|++++|+..++++....|++.+-+
T Consensus 173 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~ 221 (225)
T 2yhc_A 173 MLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEHH 221 (225)
T ss_dssp HHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCCT
T ss_pred HHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhhc
Confidence 999999987 7899999999999999999999999999999987644
No 131
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.59 E-value=1.4e-15 Score=146.81 Aligned_cols=113 Identities=14% Similarity=0.043 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHH
Q 004426 549 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV 628 (754)
Q Consensus 549 ~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~ 628 (754)
..+.++|..+..+|+|++|+..|++|++++|++... ++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~---------------------~a--------------------- 49 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE---------------------EA--------------------- 49 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT---------------------SC---------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch---------------------hh---------------------
Confidence 456789999999999999999999999999997321 01
Q ss_pred HHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhc-------CCCchhHH----HHHHHHHHHcCCHHHHHHHH
Q 004426 629 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH-------SSSEHERL----VYEGWILYDTGHREEALSRA 697 (754)
Q Consensus 629 ~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l-------~P~~~ea~----~~~G~~ly~~G~~eeAl~~~ 697 (754)
+..+|.++.+|.|+|.++.++|++++|+.+|++|+++ +|+++.++ +++|.+|..+|+++||+..|
T Consensus 50 ----~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y 125 (159)
T 2hr2_A 50 ----FDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF 125 (159)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----hhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHH
Confidence 1123445669999999999999999999999999999 99999999 99999999999999999999
Q ss_pred HHHHhcCCCh
Q 004426 698 EKSISIERTF 707 (754)
Q Consensus 698 e~Ai~l~~~~ 707 (754)
++|++++|+.
T Consensus 126 ~kAlel~p~d 135 (159)
T 2hr2_A 126 KKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHhcCCCc
Confidence 9999999864
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.58 E-value=7.5e-15 Score=139.58 Aligned_cols=116 Identities=15% Similarity=-0.022 Sum_probs=104.4
Q ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhh
Q 004426 535 ISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKL 613 (754)
Q Consensus 535 l~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l 613 (754)
-..|+++++++|+ +..++.+|.++...|++++|+..|+++++++|++
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------------------------------- 54 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-------------------------------- 54 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------------------
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc--------------------------------
Confidence 3468889999995 7888889999999999999988877777777654
Q ss_pred hhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHH
Q 004426 614 YDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEA 693 (754)
Q Consensus 614 ~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeA 693 (754)
+.+|+++|.++..+|++++|+..|++|++++|+++++++++|.+++.+|++++|
T Consensus 55 --------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A 108 (148)
T 2vgx_A 55 --------------------------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEA 108 (148)
T ss_dssp --------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHH
Confidence 567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChH
Q 004426 694 LSRAEKSISIERTFE 708 (754)
Q Consensus 694 l~~~e~Ai~l~~~~~ 708 (754)
+..|++|+++.|+..
T Consensus 109 ~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 109 ESGLFLAQELIANXP 123 (148)
T ss_dssp HHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHCcCCC
Confidence 999999999988754
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.58 E-value=8.7e-15 Score=154.03 Aligned_cols=218 Identities=10% Similarity=0.016 Sum_probs=164.8
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
++|+..|++|++++|+++.+|.++|.++..+|++++|+..|++|++++|+ +..++++|.++..+|++++|+..|+++++
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 21 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78888899999999999999999999999999999999999999999996 78899999999999999999999999999
Q ss_pred cCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCH
Q 004426 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 656 (754)
Q Consensus 577 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~ 656 (754)
++|++...++......+. .. ++ ...........|.++.+...++.++ .|++
T Consensus 101 l~p~~~~~~~~~~~~~~~---~~------~~------------------~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~ 151 (281)
T 2c2l_A 101 LAKEQRLNFGDDIPSALR---IA------KK------------------KRWNSIEERRIHQESELHSYLTRLI--AAER 151 (281)
T ss_dssp HHHHTTCCCCSHHHHHHH---HH------HH------------------HHHHHHHHTCCCCCCHHHHHHHHHH--HHHH
T ss_pred hCccchhhHHHHHHHHHH---HH------HH------------------HHHHHHHHHHHhhhHHHHHHHHHHH--HHHH
Confidence 999875433322111110 00 00 1122233346677778777777765 7999
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCChH--HHHHHHHHhhccCCCCC--------
Q 004426 657 KAAMRCLRLARNHSSSEHERLVYEGWILYDT-GHREEALSRAEKSISIERTFE--AFFLKAYILADTNLDPE-------- 725 (754)
Q Consensus 657 eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~-G~~eeAl~~~e~Ai~l~~~~~--a~~~~~~~~~~~~~~~~-------- 725 (754)
++|++.+++|++++|++......++-++... +++++|...|+++.+..+..+ .+|.=.+.+ +.--||-
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~~~~~~~c~i~~-~~~~dPv~~~~gh~f 230 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISF-ELMREPCITPSGITY 230 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCCCCSTTBCTTTC-SBCSSEEECSSCCEE
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccCCcCcC-CHhcCCeECCCCCEE
Confidence 9999999999999999998888888887777 889999999999988644433 333322211 1222443
Q ss_pred chhHHHHHHHHHhc-CCCCCc
Q 004426 726 SSTYVIQLLEEALR-CPSDGL 745 (754)
Q Consensus 726 ~~~~~~~~~~~~~~-~~~~~~ 745 (754)
|...+..-|++--. ||..+-
T Consensus 231 ~~~~i~~~~~~~~~~cP~~~~ 251 (281)
T 2c2l_A 231 DRKDIEEHLQRVGHFNPVTRS 251 (281)
T ss_dssp ETTHHHHHHHHTCSSCTTTCC
T ss_pred CHHHHHHHHHHCCCCCcCCCC
Confidence 25567777776443 998763
No 134
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.57 E-value=7.8e-15 Score=137.48 Aligned_cols=128 Identities=12% Similarity=-0.036 Sum_probs=101.5
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 502 VDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESN 580 (754)
Q Consensus 502 ~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~ 580 (754)
..|.++++++|+++.+++++|.++...|++++|+..|++++.++|+ +..++.+|.++..+|++++|+..|+++++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4578888899999999999999999999999999999999988885 777888888888888888888877777777765
Q ss_pred ccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHH
Q 004426 581 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAM 660 (754)
Q Consensus 581 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl 660 (754)
+ +.+++++|.++..+|++++|+
T Consensus 85 ~----------------------------------------------------------~~~~~~lg~~~~~~g~~~~A~ 106 (142)
T 2xcb_A 85 E----------------------------------------------------------PRFPFHAAECHLQLGDLDGAE 106 (142)
T ss_dssp C----------------------------------------------------------THHHHHHHHHHHHTTCHHHHH
T ss_pred C----------------------------------------------------------cHHHHHHHHHHHHcCCHHHHH
Confidence 4 456788888888888888888
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHc
Q 004426 661 RCLRLARNHSSSEHERLVYEGWILYDT 687 (754)
Q Consensus 661 ~~~~~Al~l~P~~~ea~~~~G~~ly~~ 687 (754)
..|+++++++|++++....+..+.-.+
T Consensus 107 ~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 107 SGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 888888888888887766555554433
No 135
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.57 E-value=2.2e-14 Score=139.23 Aligned_cols=154 Identities=13% Similarity=-0.038 Sum_probs=134.4
Q ss_pred HhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc-----
Q 004426 422 LHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----- 494 (754)
Q Consensus 422 l~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y----- 494 (754)
+..+|..+...|++++|+..|+++++.+| ..++.++|.++...|++++|+..+.+++...| .+..+...+..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh
Confidence 56788899999999999999999999854 56789999999999999999999999999988 65544333211
Q ss_pred CChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 004426 495 NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS---VDCLELRAWLFIAADDYESALRDT 571 (754)
Q Consensus 495 ~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~---~~~~~~ra~~~~~lgd~~~Al~d~ 571 (754)
....+|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|+ +..+.+.+.++..+|+.++|+..|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 11245799999999999999999999999999999999999999999999996 347888999999999999999999
Q ss_pred HHHHh
Q 004426 572 LALLA 576 (754)
Q Consensus 572 ~~al~ 576 (754)
++++.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99985
No 136
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.56 E-value=6e-14 Score=161.58 Aligned_cols=161 Identities=11% Similarity=-0.002 Sum_probs=124.2
Q ss_pred cchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhh
Q 004426 433 EEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASEL 510 (754)
Q Consensus 433 g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~L 510 (754)
|++++|+..|+++++.++ ..++..+|.++...|++ ++|+..|++|+++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~------------------------------~~A~~~~~~al~~ 52 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDT------------------------------TAGEMAVQRGLAL 52 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCH------------------------------HHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH------------------------------HHHHHHHHHHHHh
Confidence 566777777777776643 34555566666655554 6778888999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchh
Q 004426 511 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 589 (754)
Q Consensus 511 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~ 589 (754)
+|+++.+|.++|.++..+|++++|+..|+++++++|+ +..++++|.++..+|++++|+..|+++++++|++
T Consensus 53 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------- 124 (568)
T 2vsy_A 53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE-------- 124 (568)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------
Confidence 9999999999999999999999999999999999996 7889999999999999999999888888888765
Q ss_pred hhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHc---CCHHHHHHHHHHH
Q 004426 590 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL---NCQKAAMRCLRLA 666 (754)
Q Consensus 590 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~l---g~~eeAl~~~~~A 666 (754)
+.+++++|.++..+ |+.++|++.++++
T Consensus 125 --------------------------------------------------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 125 --------------------------------------------------PYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred --------------------------------------------------HHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 35677888899999 9999999999999
Q ss_pred HhcCCCchhHHHHHH
Q 004426 667 RNHSSSEHERLVYEG 681 (754)
Q Consensus 667 l~l~P~~~ea~~~~G 681 (754)
++.+|++.+++..++
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 999999998888777
No 137
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.56 E-value=4.4e-14 Score=148.97 Aligned_cols=147 Identities=13% Similarity=-0.008 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLE-LRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~-~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
++|+..|+++++++|+++.++.++|.++.++|++++|+..|+++++.+|++.... ..+..+...++.++|+..|+++++
T Consensus 134 ~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~ 213 (287)
T 3qou_A 134 TDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVA 213 (287)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHh
Confidence 5666667777777777777778888888888888888888888777777644333 344556777777777777888888
Q ss_pred cCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCC--hhHHHhHHHHHHHcC
Q 004426 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK--SFLRFRQSLLLLRLN 654 (754)
Q Consensus 577 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~--~~~~~~~g~~L~~lg 654 (754)
++|++ ..+...++.+....+++++| +..++++++.+|++ +.++.++|.++..+|
T Consensus 214 ~~P~~------~~~~~~la~~l~~~g~~~~A------------------~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 214 ENPED------AALATQLALQLHQVGRNEEA------------------LELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HCTTC------HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred cCCcc------HHHHHHHHHHHHHcccHHHH------------------HHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 88776 33444444444444444444 67778888888877 889999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 004426 655 CQKAAMRCLRLARN 668 (754)
Q Consensus 655 ~~eeAl~~~~~Al~ 668 (754)
+.++|...|++++.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999999986
No 138
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.55 E-value=1.7e-13 Score=122.86 Aligned_cols=133 Identities=14% Similarity=0.140 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHH
Q 004426 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 594 (754)
Q Consensus 516 ~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~ 594 (754)
.+|+.+|.++...|++++|+..++++++.+|+ +..+...+.++...|++++|+..|+++++++|++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------- 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------------- 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-------------
Confidence 57889999999999999999999999999985 7777888899999999999998888877776653
Q ss_pred HHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 004426 595 KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 674 (754)
Q Consensus 595 ~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 674 (754)
+.+++++|.++..+|++++|+..++++++..|++.
T Consensus 69 ---------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 103 (136)
T 2fo7_A 69 ---------------------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 103 (136)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ---------------------------------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 34577789999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 675 ERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (754)
Q Consensus 675 ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~ 706 (754)
.++..+|.+++.+|++++|+..+++++.++|.
T Consensus 104 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 104 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999886
No 139
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.54 E-value=1.5e-13 Score=138.10 Aligned_cols=188 Identities=13% Similarity=0.052 Sum_probs=152.6
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAAD----DYESALRDTLA 573 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lg----d~~~Al~d~~~ 573 (754)
.+|+..|.++.+. .++.+++++|.++...+++++|+..|++|+... ++.++++.|.+|.. | |+++|+..|++
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 4677889999986 899999999999999999999999999999642 58888999999888 7 99999999999
Q ss_pred HHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCC--CChhHHHhHHHHH
Q 004426 574 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDP--GKSFLRFRQSLLL 650 (754)
Q Consensus 574 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P--~~~~~~~~~g~~L 650 (754)
+++. ++ ..+...++.+...-. .-..|+. |+..++++++..| +++.+++++|.++
T Consensus 79 A~~~--g~------~~a~~~Lg~~y~~g~---------------g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y 135 (212)
T 3rjv_A 79 AVEA--GS------KSGEIVLARVLVNRQ---------------AGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIY 135 (212)
T ss_dssp HHHT--TC------HHHHHHHHHHHTCGG---------------GSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHH
T ss_pred HHHC--CC------HHHHHHHHHHHHcCC---------------CCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 9654 44 334444443322200 0012333 5889999999999 4699999999999
Q ss_pred HH----cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCCChHHHHHH
Q 004426 651 LR----LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT-G-----HREEALSRAEKSISIERTFEAFFLK 713 (754)
Q Consensus 651 ~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~-G-----~~eeAl~~~e~Ai~l~~~~~a~~~~ 713 (754)
.. .+++++|+..|++|+++ |.++++++++|.++... | ++++|+..|++|++.........+.
T Consensus 136 ~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~ 207 (212)
T 3rjv_A 136 ASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFD 207 (212)
T ss_dssp HHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99 89999999999999999 88899999999998865 4 9999999999999997666555554
No 140
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.54 E-value=3.3e-16 Score=176.71 Aligned_cols=160 Identities=10% Similarity=0.012 Sum_probs=97.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhcccc
Q 004426 527 EEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWS 605 (754)
Q Consensus 527 ~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~ 605 (754)
.++++++|+..|++++..+|+ ...+..+|.++..+|+|++|+..|++|++++|++..+..... . .....
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~-----~-----~~~~~ 315 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKES-----K-----ASESF 315 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHH-----H-----HHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHH-----H-----HHHHH
Confidence 455666677777777777764 566666777777777777777777777777776532100000 0 00000
Q ss_pred chhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 004426 606 PADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL 684 (754)
Q Consensus 606 ~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~l 684 (754)
.+.+|.++...+...+++. |+.+++++|+++|.++.+|+++|.++..+|++++|+.+|++|++++|++.+++.++|.++
T Consensus 316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1233333333333334444 467777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHH
Q 004426 685 YDTGHREEALSR 696 (754)
Q Consensus 685 y~~G~~eeAl~~ 696 (754)
..+|++++|...
T Consensus 396 ~~~~~~~~a~~~ 407 (457)
T 1kt0_A 396 KKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776643
No 141
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.54 E-value=6.9e-15 Score=165.91 Aligned_cols=141 Identities=12% Similarity=0.086 Sum_probs=119.0
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------HHHHHHHHHHHHHc
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----------------VDCLELRAWLFIAA 561 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~----------------~~~~~~ra~~~~~l 561 (754)
++|+..|+++++.+|+.+.+|+++|.++..+|++++|+..|++||+++|+ ..+++++|.++..+
T Consensus 251 ~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330 (457)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777888899999999999999999999999999999999999999995 37788999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChh
Q 004426 562 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF 641 (754)
Q Consensus 562 gd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~ 641 (754)
|+|++|+.+|++|++++|++ ..++..++.+.....++++| +.+|++|++++|++..
T Consensus 331 g~~~~A~~~~~~al~~~p~~------~~a~~~~g~a~~~~g~~~~A------------------~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 331 REYTKAVECCDKALGLDSAN------EKGLYRRGEAQLLMNEFESA------------------KGDFEKVLEVNPQNKA 386 (457)
T ss_dssp TCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHTTC----C
T ss_pred cCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHccCHHHH------------------HHHHHHHHHhCCCCHH
Confidence 99999999999999999987 34445555454555555555 8899999999999999
Q ss_pred HHHhHHHHHHHcCCHHHHHHH
Q 004426 642 LRFRQSLLLLRLNCQKAAMRC 662 (754)
Q Consensus 642 ~~~~~g~~L~~lg~~eeAl~~ 662 (754)
++.+++.++.++++.++|.+.
T Consensus 387 a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 142
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.53 E-value=2.5e-14 Score=134.02 Aligned_cols=115 Identities=10% Similarity=-0.025 Sum_probs=101.1
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhh
Q 004426 536 SEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLY 614 (754)
Q Consensus 536 ~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~ 614 (754)
..|+++++++|+ +..++.+|..+...|++++|+..|+++++++|++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------------- 51 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--------------------------------- 51 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---------------------------------
Confidence 567888888885 7778889999999999999988887777777754
Q ss_pred hccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHH
Q 004426 615 DRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 694 (754)
Q Consensus 615 ~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 694 (754)
+.+|+++|.++..+|++++|+..|++|++++|+++++++++|.+++.+|++++|+
T Consensus 52 -------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 106 (142)
T 2xcb_A 52 -------------------------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAE 106 (142)
T ss_dssp -------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChH
Q 004426 695 SRAEKSISIERTFE 708 (754)
Q Consensus 695 ~~~e~Ai~l~~~~~ 708 (754)
..|++++++.|+..
T Consensus 107 ~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 107 SGFYSARALAAAQP 120 (142)
T ss_dssp HHHHHHHHHHHTCG
T ss_pred HHHHHHHHhCCCCc
Confidence 99999999998665
No 143
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.53 E-value=2.3e-13 Score=128.19 Aligned_cols=132 Identities=17% Similarity=0.130 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHH
Q 004426 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 593 (754)
Q Consensus 515 ~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~ 593 (754)
+..|+.+|.++...|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 80 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------------ 80 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------------
Confidence 577899999999999999999999999999995 7888999999999999999999888888877764
Q ss_pred HHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (754)
Q Consensus 594 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 673 (754)
+.+++++|.++..+|++++|+..++++++++|++
T Consensus 81 ----------------------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 81 ----------------------------------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred ----------------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 4568899999999999999999999999999999
Q ss_pred hhHHHHHHHH--HHHcCCHHHHHHHHHHHHhcC
Q 004426 674 HERLVYEGWI--LYDTGHREEALSRAEKSISIE 704 (754)
Q Consensus 674 ~ea~~~~G~~--ly~~G~~eeAl~~~e~Ai~l~ 704 (754)
.+++.+++.+ +...|++++|+..++++..+-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 115 KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 9999666555 889999999999999987653
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.2e-13 Score=125.70 Aligned_cols=116 Identities=13% Similarity=0.041 Sum_probs=83.2
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhh
Q 004426 512 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG 590 (754)
Q Consensus 512 P~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~ 590 (754)
|..+..|+++|..+...|++++|+..|+++++++|+ +..+.++|.++..+|++++|+.+|+++++++|++
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--------- 71 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--------- 71 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---------
Confidence 445667777777777777777777777777777774 6667777777777777777777666666666653
Q ss_pred hHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 591 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS 670 (754)
Q Consensus 591 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~ 670 (754)
+.+|+++|.++..+|++++|+..|+++++++
T Consensus 72 -------------------------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 72 -------------------------------------------------VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 3456777777777777777777777777777
Q ss_pred ------CCchhHHHHHHHHHH
Q 004426 671 ------SSEHERLVYEGWILY 685 (754)
Q Consensus 671 ------P~~~ea~~~~G~~ly 685 (754)
|++.+++..++.+..
T Consensus 103 p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 103 AEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHTTTTHHHHHHHHHHHHH
T ss_pred cccCCchhHHHHHHHHHHHHH
Confidence 777777666665543
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.52 E-value=1.2e-13 Score=132.01 Aligned_cols=119 Identities=17% Similarity=0.063 Sum_probs=99.7
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccch
Q 004426 510 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 588 (754)
Q Consensus 510 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~ 588 (754)
-+|..+.+|+.+|.++...|++++|+..|+++++++|+ +..++++|.++..+|++++|+.+|+++++++|++
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------- 78 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY------- 78 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------
Confidence 35667788899999999999999999999999999985 7888888889999999988888887777777754
Q ss_pred hhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (754)
Q Consensus 589 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 668 (754)
+.+|+++|.++..+|++++|+..|+++++
T Consensus 79 ---------------------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 79 ---------------------------------------------------SKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45678888899999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHH
Q 004426 669 HSSSEHERLVYEGWILYD 686 (754)
Q Consensus 669 l~P~~~ea~~~~G~~ly~ 686 (754)
++|++.++++++|+....
T Consensus 108 ~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 108 AEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHSSSCCHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHH
Confidence 999998888888876543
No 146
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.51 E-value=1e-13 Score=150.96 Aligned_cols=227 Identities=13% Similarity=-0.062 Sum_probs=158.7
Q ss_pred hhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Q 004426 453 SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIR 532 (754)
Q Consensus 453 a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~ 532 (754)
.++..|..+...|++.+|+..+.+++......+ -+|..+.+|.++|.++..+|+++
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------~~~~~a~~~~~lg~~y~~~~~~~ 158 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS------------------------DDIEKAEFHFKVAEAYYHMKQTH 158 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC------------------------CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCC------------------------ChHHHHHHHHHHHHHHHHcCCcH
Confidence 445567777777777777776666665432110 01334678999999999999999
Q ss_pred HHHHHHHHHHHcCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccc
Q 004426 533 AAISEIDRIIVFKLS--------VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSW 604 (754)
Q Consensus 533 eAl~~~~rAl~l~p~--------~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~ 604 (754)
+|+..+++|+.+.+. ..++.+.|.++..+|++++|+..|++|+++.++...-.....+...++.+....+++
T Consensus 159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 999999999998442 345678999999999999999999999998664321112233444444444444444
Q ss_pred cchhhhhhhhhccccccccchHHHHHHHHH-----cCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcC-----CCch
Q 004426 605 SPADCWIKLYDRWSSVDDIGSLAVINQMLI-----NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS-----SSEH 674 (754)
Q Consensus 605 ~~A~~~~~l~~~~~~~~d~~al~~~~~aL~-----l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-----P~~~ 674 (754)
++| +..++++++ .+|..+.+++++|.++.++|++++|+..+++|+++. |...
T Consensus 239 ~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 300 (378)
T 3q15_A 239 QMA------------------VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300 (378)
T ss_dssp HHH------------------HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH
T ss_pred HHH------------------HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 444 778888888 788888888888888888888888888888888874 4445
Q ss_pred hHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCChHHHHHHHHHhhccC
Q 004426 675 ERLVYEGWILYDTGH---REEALSRAEKSISIERTFEAFFLKAYILADTN 721 (754)
Q Consensus 675 ea~~~~G~~ly~~G~---~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~~~ 721 (754)
..+..++.++...|+ +++|+..+++.-......+.++..|..+....
T Consensus 301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 301 ELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCC
Confidence 566777777777788 88888877773222222225555665555543
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.50 E-value=8.5e-14 Score=146.44 Aligned_cols=168 Identities=14% Similarity=0.072 Sum_probs=138.5
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhh
Q 004426 512 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG 590 (754)
Q Consensus 512 P~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~ 590 (754)
|+.+.+++.+|.++...|++++|+..|++|++++|+ +..++++|.++..+|++++|+.+|+++++++|++ ..+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~ 74 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------VKA 74 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------HHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHH
Confidence 778999999999999999999999999999999995 8889999999999999999999999999999988 344
Q ss_pred hHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 591 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS 670 (754)
Q Consensus 591 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~ 670 (754)
...++.+....+++++| +..++++++++|+++..+........ +...+...........
T Consensus 75 ~~~lg~~~~~~g~~~~A------------------~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 133 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEA------------------IANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRI 133 (281)
T ss_dssp HHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 55555555555555555 88999999999988655444333333 3344555566677788
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 671 SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 671 P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
|.+++...++|..+ .|++++|+..|++|++++|+..
T Consensus 134 ~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~ 169 (281)
T 2c2l_A 134 HQESELHSYLTRLI--AAERERELEECQRNHEGHEDDG 169 (281)
T ss_dssp CCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHH
T ss_pred hhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchh
Confidence 99999999988865 7999999999999999999865
No 148
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.49 E-value=4.6e-13 Score=132.38 Aligned_cols=133 Identities=14% Similarity=0.185 Sum_probs=116.0
Q ss_pred HHHHHhhhhhhHhhccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCCh
Q 004426 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (754)
Q Consensus 418 ka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g 497 (754)
....++++|..+...|++++|+..|++++.. ...++.++|.++...|++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~~g~~------------------------------ 53 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKNM------------------------------ 53 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCH------------------------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCH------------------------------
Confidence 4567888999999999999999999988643 345667777777777766
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-H----------------HHHHHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-V----------------DCLELRAWLFIA 560 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~----------------~~~~~ra~~~~~ 560 (754)
++|+..|++|++++|+++.+|.++|.++..+|++++|+..|++++++.|+ . ..++++|.++..
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 54 TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 56677788899999999999999999999999999999999999998774 4 778899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCc
Q 004426 561 ADDYESALRDTLALLALESNY 581 (754)
Q Consensus 561 lgd~~~Al~d~~~al~l~P~~ 581 (754)
+|++++|+..|+++++++|++
T Consensus 134 ~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 134 KEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHTTCCSG
T ss_pred ccCHHHHHHHHHHHHHcCccc
Confidence 999999999999999999987
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.49 E-value=2.8e-13 Score=129.48 Aligned_cols=114 Identities=14% Similarity=0.047 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHH
Q 004426 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (754)
Q Consensus 548 ~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 627 (754)
+..++.+|.++...|++++|+..|+++++++|++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------------------------------------- 44 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---------------------------------------------- 44 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC----------------------------------------------
Confidence 5667788888999999999888888777777754
Q ss_pred HHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004426 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (754)
Q Consensus 628 ~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~ 707 (754)
+.+|+++|.++.++|++++|+..|++|++++|+++.+++++|.+++.+|++++|+..|+++++++|++
T Consensus 45 ------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 45 ------------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred ------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhhc
Q 004426 708 E-AFFLKAYILAD 719 (754)
Q Consensus 708 ~-a~~~~~~~~~~ 719 (754)
. +++.++++.+-
T Consensus 113 ~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 113 GSDAMKRGLETTK 125 (164)
T ss_dssp CCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8 88999987653
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.48 E-value=2.7e-13 Score=125.18 Aligned_cols=109 Identities=9% Similarity=0.021 Sum_probs=92.6
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhh
Q 004426 513 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (754)
Q Consensus 513 ~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~ 591 (754)
+.+.++.++|.++..+|++++|+..|++||+++|+ +..+.++|.+|..+|++++|+.+|+++++++|++.. ..
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~ 79 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA------DY 79 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------CH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch------hh
Confidence 45678999999999999999999999999999996 888999999999999999999999999999997621 00
Q ss_pred HHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (754)
Q Consensus 592 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 671 (754)
. .-+.+|+++|.++..+|++++|+..|++|+...|
T Consensus 80 ~---------------------------------------------~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 80 K---------------------------------------------LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp H---------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred H---------------------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 0 0134677888888888888888888888888887
Q ss_pred C
Q 004426 672 S 672 (754)
Q Consensus 672 ~ 672 (754)
+
T Consensus 115 ~ 115 (127)
T 4gcn_A 115 D 115 (127)
T ss_dssp C
T ss_pred C
Confidence 5
No 151
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.47 E-value=1.5e-13 Score=133.07 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=94.9
Q ss_pred EEEEE-CCeEEehhhHHHhhcCHHHHHhhcC-CCC-CCCcceEEecCCCCCHHHHHHHHHHhhcCC--------------
Q 004426 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYG-GFV-ESKRKTIDFSHDGVSVEGLRAVEVYTRTSR-------------- 282 (754)
Q Consensus 220 V~f~V-~g~~f~aHR~iLaa~S~yF~aMf~~-~~~-Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~-------------- 282 (754)
|+++. +|+.|.+||.+ |+.|+||++||.+ ++. |+....|.| ++|+..+|+.|++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl--~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPL--PNVNAAILKKVIQWCTHHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEEC--TTSCHHHHHHHHHHHHHTTTCCC----------
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCC--CCccHHHHHHHHHHHHHcCcCCCCccccccccc
Confidence 77765 79999999999 8999999999998 888 777789999 9999999999999999988
Q ss_pred ------------CCCCChhHHHHHHHHhchhChhhHHHHHHHHHHhhcCC--HhhHHHHHHHhhhhchH
Q 004426 283 ------------VDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGD--IEDALILIDYGLEERAT 337 (754)
Q Consensus 283 ------------l~~i~~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~--~~n~l~il~~A~~~~~~ 337 (754)
+. ++.+++++|+.+||++++..|.+.|+++++..+.+ ++.+..++.+...+...
T Consensus 80 ~~~~i~~wD~~F~~-id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t~e 147 (159)
T 2ast_A 80 RTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEE 147 (159)
T ss_dssp -CCCCCHHHHHHTC-SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSCTT
T ss_pred chhhhhHHHHHHHc-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHH
Confidence 66 88999999999999999999999999999998862 55666666555554443
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.47 E-value=7.3e-14 Score=137.89 Aligned_cols=139 Identities=14% Similarity=0.101 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-H----------------HHHHHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-V----------------DCLELRAWLFIA 560 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~----------------~~~~~ra~~~~~ 560 (754)
+++.+.++...+-.+..+..+..+|.++...|++++|+..|++++++.|+ + ..+.++|.++..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 100 (198)
T 2fbn_A 21 GAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 100 (198)
T ss_dssp -CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555666788899999999999999999999999999885 5 677888899999
Q ss_pred cCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCCh
Q 004426 561 ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS 640 (754)
Q Consensus 561 lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~ 640 (754)
+|++++|+..|+++++++|++ +
T Consensus 101 ~~~~~~A~~~~~~al~~~p~~----------------------------------------------------------~ 122 (198)
T 2fbn_A 101 NKDYPKAIDHASKVLKIDKNN----------------------------------------------------------V 122 (198)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC----------------------------------------------------------H
T ss_pred hcCHHHHHHHHHHHHHhCccc----------------------------------------------------------H
Confidence 999999988888887777754 4
Q ss_pred hHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHH
Q 004426 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 694 (754)
Q Consensus 641 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 694 (754)
.+++++|.++..+|++++|+..|++|++++|++.+++..+|.++..+|+.+++.
T Consensus 123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 123 KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999998888776
No 153
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.47 E-value=1.1e-13 Score=145.98 Aligned_cols=205 Identities=8% Similarity=0.001 Sum_probs=142.1
Q ss_pred HhhhhhhHhhccchHHHHHHHHHHhhhcch--hhhhhH-------HHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhh
Q 004426 422 LHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGL-------ARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERS 492 (754)
Q Consensus 422 l~~LG~v~~~~g~~~eA~~~f~~AL~~~~~--~a~~~l-------arv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~ 492 (754)
++..|.-+ .-+++.+|...|.+|++++|. ++|.|+ +.++...++..+++
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~--------------------- 67 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNF--------------------- 67 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGT---------------------
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHH---------------------
Confidence 44455554 467778888888888777553 566665 44444444444444
Q ss_pred hcCChhhHHHHHHHHHhhCCCChHHHHH---------------------HHHHHHHcCCHHHHHHHHHHHHHcCCCHHHH
Q 004426 493 LYNLGREKIVDLNYASELDPTLSFPYKY---------------------RAVAKMEEGQIRAAISEIDRIIVFKLSVDCL 551 (754)
Q Consensus 493 ~y~~g~eAl~dl~kAi~LdP~~~~ay~~---------------------rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~ 551 (754)
-.+.+++++.|+...++++ .|.+|.++|+|++|.+.|+.++...|+....
T Consensus 68 ---------~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~ 138 (282)
T 4f3v_A 68 ---------GQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVA 138 (282)
T ss_dssp ---------THHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHH
T ss_pred ---------HHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHH
Confidence 4455555555555444444 6778888888888888888888878852277
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHH
Q 004426 552 ELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQ 631 (754)
Q Consensus 552 ~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~ 631 (754)
+.++.++.+.|||++|+..|+++.+..+++ ....+...++.+.....++++| +..|++
T Consensus 139 ~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~----~~~~a~~~LG~al~~LG~~~eA------------------l~~l~~ 196 (282)
T 4f3v_A 139 WMKAVVYGAAERWTDVIDQVKSAGKWPDKF----LAGAAGVAHGVAAANLALFTEA------------------ERRLTE 196 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTGGGCSCHH----HHHHHHHHHHHHHHHTTCHHHH------------------HHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhhccCCcc----cHHHHHHHHHHHHHHCCCHHHH------------------HHHHHH
Confidence 888888888888888888888776654221 0122445555555555555555 777888
Q ss_pred HHHcC--CC-ChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHH
Q 004426 632 MLIND--PG-KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYE 680 (754)
Q Consensus 632 aL~l~--P~-~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~ 680 (754)
++... |. .+++++++|.+|.++|+.++|...|+++++.+|+ +.+...+
T Consensus 197 a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 197 ANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 87544 55 6789999999999999999999999999999999 7665443
No 154
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.46 E-value=7e-13 Score=119.77 Aligned_cols=122 Identities=17% Similarity=0.126 Sum_probs=108.5
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccch
Q 004426 510 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 588 (754)
Q Consensus 510 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~ 588 (754)
-.|..+.+|+.+|.++...|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------- 83 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF------- 83 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-------
Confidence 35778899999999999999999999999999999995 7888889999999999999998888887777754
Q ss_pred hhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 668 (754)
Q Consensus 589 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 668 (754)
+.+++++|.++..+|++++|+..++++++
T Consensus 84 ---------------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 84 ---------------------------------------------------IKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45678899999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHcCC
Q 004426 669 HSSSEHERLVYEGWILYDTGH 689 (754)
Q Consensus 669 l~P~~~ea~~~~G~~ly~~G~ 689 (754)
++|++.+++..+|.++..+|+
T Consensus 113 ~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 113 LDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HCGGGTHHHHHHHHHHHHHTC
T ss_pred hCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999998875
No 155
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.46 E-value=1.8e-14 Score=163.54 Aligned_cols=138 Identities=17% Similarity=0.163 Sum_probs=121.8
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhh
Q 004426 513 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (754)
Q Consensus 513 ~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~ 591 (754)
+.+.+|+++|.++.++|++++|+..|++|++++|+ +..++++|.++..+|++++|+.+|++|++++|++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------- 73 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---------- 73 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------
Confidence 34567888999999999999999999999999996 8889999999999999999999888888888765
Q ss_pred HHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (754)
Q Consensus 592 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 671 (754)
+.+|+++|.++..+|++++|+..|++|++++|
T Consensus 74 ------------------------------------------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 105 (477)
T 1wao_1 74 ------------------------------------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKP 105 (477)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred ------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45788999999999999999999999999999
Q ss_pred CchhHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcCCChH
Q 004426 672 SEHERLVYEGWI--LYDTGHREEALSRAE-----------KSISIERTFE 708 (754)
Q Consensus 672 ~~~ea~~~~G~~--ly~~G~~eeAl~~~e-----------~Ai~l~~~~~ 708 (754)
++.+++.++|.+ +..+|++++|++.|+ ++++++|++.
T Consensus 106 ~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 106 HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 999999999999 999999999999999 9999988864
No 156
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.45 E-value=2.3e-13 Score=131.31 Aligned_cols=64 Identities=9% Similarity=0.021 Sum_probs=33.0
Q ss_pred HHhHHHH-HHHcCCH--HHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 643 RFRQSLL-LLRLNCQ--KAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (754)
Q Consensus 643 ~~~~g~~-L~~lg~~--eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~ 706 (754)
++++|.+ +...|++ ++|+..++++++++|++..+++++|.+++.+|++++|+..|++++++.|+
T Consensus 81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 81 YAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 4444444 3344554 55555555555555555555555555555555555555555555555554
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.1e-12 Score=119.29 Aligned_cols=103 Identities=9% Similarity=0.030 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHH
Q 004426 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (754)
Q Consensus 548 ~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 627 (754)
+..+..+|..+...|++++|+..|+++++++|++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------------------------------------- 37 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------------------------------------------- 37 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------------------------------------------
Confidence 4567778888888888888888777777777654
Q ss_pred HHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Q 004426 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE--- 704 (754)
Q Consensus 628 ~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~--- 704 (754)
+.+|+++|.++.++|++++|+..+++|++++|+++.+++++|.++..+|++++|+..|+++++++
T Consensus 38 ------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 105 (126)
T 3upv_A 38 ------------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV 105 (126)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc
Confidence 57799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CChH
Q 004426 705 ---RTFE 708 (754)
Q Consensus 705 ---~~~~ 708 (754)
|+..
T Consensus 106 ~~~p~~~ 112 (126)
T 3upv_A 106 NNGSSAR 112 (126)
T ss_dssp HTTTTHH
T ss_pred CCchhHH
Confidence 6665
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.45 E-value=5.8e-13 Score=119.29 Aligned_cols=125 Identities=18% Similarity=0.104 Sum_probs=110.8
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccccc
Q 004426 508 SELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHG 586 (754)
Q Consensus 508 i~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~ 586 (754)
.+.+|..+.++..+|.++...|++++|+..|++++.++|+ +..+..+|.++..+|++++|+..|+++++++|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----- 79 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY----- 79 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-----
Confidence 4456778899999999999999999999999999999995 7888889999999999999999888888777754
Q ss_pred chhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHH
Q 004426 587 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA 666 (754)
Q Consensus 587 ~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~A 666 (754)
+.+++++|.++..+|++++|+..++++
T Consensus 80 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 80 -----------------------------------------------------SKAYGRMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 356788999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHHHHHcCCH
Q 004426 667 RNHSSSEHERLVYEGWILYDTGHR 690 (754)
Q Consensus 667 l~l~P~~~ea~~~~G~~ly~~G~~ 690 (754)
++++|++..++..+|.++..+|++
T Consensus 107 ~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 107 LELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999875
No 159
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.44 E-value=1.3e-12 Score=137.30 Aligned_cols=180 Identities=10% Similarity=-0.002 Sum_probs=138.8
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 004426 510 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VD------CLELRAWLFIAADDYESALRDTLALLALESNYM 582 (754)
Q Consensus 510 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~------~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~ 582 (754)
.+|+....+...+..+...|++++|+..+.++++..|. .. .++..|.++...|++++|+..|++++++.++..
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 149 (293)
T 2qfc_A 70 SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI 149 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS
T ss_pred cchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC
Confidence 34555667778888999999999999999999988774 21 234566778888999999999999998877653
Q ss_pred ccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHH---HcCCCCh----hHHHhHHHHHHHcCC
Q 004426 583 MFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML---INDPGKS----FLRFRQSLLLLRLNC 655 (754)
Q Consensus 583 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL---~l~P~~~----~~~~~~g~~L~~lg~ 655 (754)
...+...+....+.+....+++++| +..+++|+ +..|.+. .+++++|.++..+|+
T Consensus 150 ~~~~~~~~~~~lg~~y~~~~~~~~A------------------~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 2qfc_A 150 DVYQNLYIENAIANIYAENGYLKKG------------------IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh
Confidence 3333333445455444444444444 78888888 5566643 689999999999999
Q ss_pred HHHHHHHHHHHHhcCCC------chhHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCCh
Q 004426 656 QKAAMRCLRLARNHSSS------EHERLVYEGWILYDTGHREEA-LSRAEKSISIERTF 707 (754)
Q Consensus 656 ~eeAl~~~~~Al~l~P~------~~ea~~~~G~~ly~~G~~eeA-l~~~e~Ai~l~~~~ 707 (754)
+++|+..+++|+++.++ -+.+++++|.++..+|++++| ...|++|+.+...+
T Consensus 212 y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999998754 278999999999999999999 77799999874433
No 160
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.44 E-value=1.1e-10 Score=143.23 Aligned_cols=238 Identities=15% Similarity=0.058 Sum_probs=170.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhhC--CCChHHHHHHHHHHHHcCCHHHH
Q 004426 457 LARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELD--PTLSFPYKYRAVAKMEEGQIRAA 534 (754)
Q Consensus 457 larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~Ld--P~~~~ay~~rg~~l~~lg~~~eA 534 (754)
.|.++...|.+++|...|.++- .+......+ -+++..+++|+++. .+.+..|.++|.++.++|++++|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-~~~~A~~VL---------ie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-VNTSAVQVL---------IEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-CHHHHHHHH---------HHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHH
Confidence 5667778888888888888763 111101111 22344455555544 57788888999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc-c-----cccchhhhHHHHHHhhhhccccchh
Q 004426 535 ISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYM-M-----FHGRVSGDHLVKLLNHHVRSWSPAD 608 (754)
Q Consensus 535 l~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~-~-----~~~~~~~~~~~~~l~~~~~~~~~A~ 608 (754)
+..|.+| -++..+...+.++.++|+|++|++.|+.|.+.+|+.. . .+.+. .....+...+.....+
T Consensus 1125 IdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl---~rleele~fI~~~n~a- 1196 (1630)
T 1xi4_A 1125 IDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT---NRLAELEEFINGPNNA- 1196 (1630)
T ss_pred HHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhh---cCHHHHHHHHhCCCHH-
Confidence 9998776 3467777788888899999999999998888886521 1 11111 1111233333333333
Q ss_pred hhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCC----------------
Q 004426 609 CWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS---------------- 671 (754)
Q Consensus 609 ~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P---------------- 671 (754)
.|.+++++..+.++++ |...|.+| ..|.++|.+|.++|++++|++.+++|...++
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHH
Confidence 4567888888888888 77788885 5899999999999999999999999966655
Q ss_pred ---------CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhcc
Q 004426 672 ---------SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILADT 720 (754)
Q Consensus 672 ---------~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~~ 720 (754)
.+++-+..++..+...|+|+||+..+|+++.++|.-. .|-..|.+++..
T Consensus 1269 A~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1269 AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 2566677788889999999999999999999999888 554666666554
No 161
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.43 E-value=7e-13 Score=126.46 Aligned_cols=115 Identities=10% Similarity=-0.007 Sum_probs=81.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVF------------------KLS-VDCLELRAWLFIAADDYESALRDTLAL 574 (754)
Q Consensus 514 ~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l------------------~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~a 574 (754)
.+..+..+|..+...|++++|+..|++||.+ +|. ...+.++|.++..+|++++|+.+|+++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3567899999999999999999999999998 443 455666777777777777776666666
Q ss_pred HhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcC
Q 004426 575 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN 654 (754)
Q Consensus 575 l~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg 654 (754)
++++|++ +.+|+++|.++..+|
T Consensus 90 l~~~p~~----------------------------------------------------------~~a~~~~g~~~~~~g 111 (162)
T 3rkv_A 90 LKREETN----------------------------------------------------------EKALFRRAKARIAAW 111 (162)
T ss_dssp HHHSTTC----------------------------------------------------------HHHHHHHHHHHHHTT
T ss_pred HhcCCcc----------------------------------------------------------hHHHHHHHHHHHHHh
Confidence 6665544 345666777777777
Q ss_pred CHHHHHHHHHHHHhcCCCch-hHHHHHHHHHHH
Q 004426 655 CQKAAMRCLRLARNHSSSEH-ERLVYEGWILYD 686 (754)
Q Consensus 655 ~~eeAl~~~~~Al~l~P~~~-ea~~~~G~~ly~ 686 (754)
++++|+..|++|++++|++. .+...++.+.-.
T Consensus 112 ~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 112 KLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 77777777777777777766 445555554443
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.43 E-value=7.2e-13 Score=121.39 Aligned_cols=79 Identities=11% Similarity=0.009 Sum_probs=66.0
Q ss_pred HHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 630 ~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
+++++++|+++.+|+++|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+..|+++++++|++.
T Consensus 41 ~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 41 EAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 3333344445678999999999999999999999999999999999999999999999999999999999999999874
No 163
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.42 E-value=1.4e-12 Score=124.34 Aligned_cols=121 Identities=12% Similarity=0.017 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHH
Q 004426 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (754)
Q Consensus 548 ~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 627 (754)
...+..+|..+...|+|++|+..|++++++-|.... .+....
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~-----------------~~~~~~--------------------- 52 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLIL-----------------REKPGE--------------------- 52 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-----------------TSCTTS---------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc-----------------cCCCCH---------------------
Confidence 355778999999999999999999999999543210 000000
Q ss_pred HHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004426 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (754)
Q Consensus 628 ~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~ 707 (754)
......+|.++.+|+++|.++.++|++++|+..+++|++++|+++.+++.+|.+++.+|++++|+..|++|++++|++
T Consensus 53 --~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 53 --PEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp --HHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 011355788899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred H
Q 004426 708 E 708 (754)
Q Consensus 708 ~ 708 (754)
.
T Consensus 131 ~ 131 (162)
T 3rkv_A 131 A 131 (162)
T ss_dssp H
T ss_pred H
Confidence 7
No 164
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.40 E-value=7.6e-14 Score=151.04 Aligned_cols=143 Identities=13% Similarity=0.020 Sum_probs=79.1
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHH------------------HHHHHHHHHHHcCCHHHHHH
Q 004426 508 SELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD------------------CLELRAWLFIAADDYESALR 569 (754)
Q Consensus 508 i~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~------------------~~~~ra~~~~~lgd~~~Al~ 569 (754)
++..|..+..|+++|.++...|++++|+..|++|+.+.|+.. +++++|.++..+|+|++|+.
T Consensus 172 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~ 251 (338)
T 2if4_A 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG 251 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344455677899999999999999999999999999999633 34444444444444444444
Q ss_pred HHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHH
Q 004426 570 DTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLL 649 (754)
Q Consensus 570 d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~ 649 (754)
.++++|+++|.++.+|+++|.+
T Consensus 252 ----------------------------------------------------------~~~~al~~~p~~~~a~~~lg~a 273 (338)
T 2if4_A 252 ----------------------------------------------------------HCNIVLTEEEKNPKALFRRGKA 273 (338)
T ss_dssp ----------------------------------------------------------HHHHHHHHCTTCHHHHHHHHHH
T ss_pred ----------------------------------------------------------HHHHHHHhCCCCHHHHHHHHHH
Confidence 4555555555667789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 650 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI-LYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 650 L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~-ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
+..+|++++|+..|++|++++|++.+++.+++.+ ....++.+++...|.+++.+.|+..
T Consensus 274 ~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 274 KAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp HHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 9999999999999999999999999999999999 5566888999999999999998764
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.40 E-value=2.4e-12 Score=117.89 Aligned_cols=121 Identities=14% Similarity=0.031 Sum_probs=94.2
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccc
Q 004426 509 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 587 (754)
Q Consensus 509 ~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~ 587 (754)
..+|..+..|..+|.++...|++++|+..|++++.++|+ +..+.++|.++..+|++++|+..|+++++++|++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------ 76 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------ 76 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh------
Confidence 457888888888999999899999999999998888885 7778888888888888888888777777766654
Q ss_pred hhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 004426 588 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (754)
Q Consensus 588 ~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 667 (754)
+.+++++|.++..+|++++|+..|++|+
T Consensus 77 ----------------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 77 ----------------------------------------------------VKAHFFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567888888888888888888888888
Q ss_pred hcCCC-----chhHHHHHHHHHHHc
Q 004426 668 NHSSS-----EHERLVYEGWILYDT 687 (754)
Q Consensus 668 ~l~P~-----~~ea~~~~G~~ly~~ 687 (754)
+++|+ +.++...+..+....
T Consensus 105 ~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 105 SLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHChhHHHHHHHHHHHHHHHHHHHH
Confidence 88888 566655555554443
No 166
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.40 E-value=5.5e-13 Score=140.15 Aligned_cols=69 Identities=12% Similarity=-0.051 Sum_probs=61.9
Q ss_pred CCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 004426 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE------HERLVYEGWILYDTG-HREEALSRAEKSISIER 705 (754)
Q Consensus 637 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~ly~~G-~~eeAl~~~e~Ai~l~~ 705 (754)
|..+.+++++|.++..+|++++|+..+++|+++.+.. +.+++++|.+++.+| ++++|+..|++|+.+-.
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 3445689999999999999999999999999998665 889999999999999 57999999999998744
No 167
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.40 E-value=2.9e-12 Score=123.52 Aligned_cols=124 Identities=10% Similarity=0.013 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHH-HHHcCCH--HHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWL-FIAADDY--ESALRDTLA 573 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~-~~~lgd~--~~Al~d~~~ 573 (754)
++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|+ +..+..+|.+ +...|++ ++|+..|++
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~ 106 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK 106 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 77888889999999999999999999999999999999999999999885 7777788887 7788887 777776666
Q ss_pred HHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHc
Q 004426 574 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL 653 (754)
Q Consensus 574 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~l 653 (754)
+++++|+ ++.+++++|.++..+
T Consensus 107 al~~~p~----------------------------------------------------------~~~~~~~la~~~~~~ 128 (177)
T 2e2e_A 107 ALALDSN----------------------------------------------------------EITALMLLASDAFMQ 128 (177)
T ss_dssp HHHHCTT----------------------------------------------------------CHHHHHHHHHHHHHT
T ss_pred HHHhCCC----------------------------------------------------------cHHHHHHHHHHHHHc
Confidence 6666665 456788899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHH
Q 004426 654 NCQKAAMRCLRLARNHSSSEHERLVY 679 (754)
Q Consensus 654 g~~eeAl~~~~~Al~l~P~~~ea~~~ 679 (754)
|++++|+..++++++++|++.++...
T Consensus 129 g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 129 ANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp TCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred ccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 99999999999999999998776543
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.39 E-value=7.4e-13 Score=130.62 Aligned_cols=163 Identities=11% Similarity=-0.085 Sum_probs=119.6
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhh
Q 004426 513 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (754)
Q Consensus 513 ~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~ 591 (754)
..+..+.+.+.....+|++++|.+.++....-.+. ...+..+|..+...|+|++|+..|++++++.|++..+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~---- 77 (198)
T 2fbn_A 2 GSSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ---- 77 (198)
T ss_dssp --------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH----
T ss_pred CCcccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh----
Confidence 34455667778888899999999999888877775 6778889999999999999999999999999986422111
Q ss_pred HHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (754)
Q Consensus 592 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 671 (754)
.+......+ ...+++++|.++..+|++++|+..+++|++++|
T Consensus 78 ---------------------------------~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 78 ---------------------------------ILLDKKKNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp ---------------------------------HHHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred ---------------------------------hHHHHHHHH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 001111222 157899999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHh
Q 004426 672 SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYIL 717 (754)
Q Consensus 672 ~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~ 717 (754)
+++.+++++|.+++.+|++++|+..|++|++++|+.. +....+.++
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887 666666554
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.39 E-value=7.4e-13 Score=122.24 Aligned_cols=104 Identities=12% Similarity=0.009 Sum_probs=92.6
Q ss_pred chhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCch-------hHH
Q 004426 606 PADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH-------ERL 677 (754)
Q Consensus 606 ~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~-------ea~ 677 (754)
.|.+|-+++......++++ |+..|++||+++|.++.+|+++|.++..+|++++|+..+++|++++|++. .++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3555566666666666666 79999999999999999999999999999999999999999999999874 588
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 004426 678 VYEGWILYDTGHREEALSRAEKSISIERTFEA 709 (754)
Q Consensus 678 ~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a 709 (754)
.++|.++..+|++++|+..|++|+++.|+.+.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~ 118 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRDPEL 118 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHH
Confidence 99999999999999999999999999998763
No 170
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.38 E-value=1.2e-11 Score=109.61 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=98.6
Q ss_pred hCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccc
Q 004426 510 LDPTL-SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 587 (754)
Q Consensus 510 LdP~~-~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~ 587 (754)
++|.. +.+|+.+|.++...|++++|+..|++++..+|+ +..+..++.++...|++++|+..|+++++++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------ 76 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------ 76 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------
Confidence 46766 788889999999999999999999999998885 7777888888888899888888877777776653
Q ss_pred hhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 004426 588 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (754)
Q Consensus 588 ~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 667 (754)
+.+++++|.++..+|++++|+..+++++
T Consensus 77 ----------------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 77 ----------------------------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3456778888889999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHHcC
Q 004426 668 NHSSSEHERLVYEGWILYDTG 688 (754)
Q Consensus 668 ~l~P~~~ea~~~~G~~ly~~G 688 (754)
+++|++.+++.++|.++..+|
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 105 ELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHCTTCHHHHHHHHHHHHHHC
T ss_pred HhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999998887665
No 171
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.38 E-value=1.1e-11 Score=124.47 Aligned_cols=186 Identities=11% Similarity=0.010 Sum_probs=104.0
Q ss_pred HHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhhCCCChH
Q 004426 437 DACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSF 516 (754)
Q Consensus 437 eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ 516 (754)
+|+.+|+++.+.++..++..+|.++...|++.+|+.+|.+++.. +++.
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------------------------------g~~~ 51 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--------------------------------GDGD 51 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--------------------------------TCHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------------------------------CCHH
Confidence 45667777777766667777777777666665555554444332 3444
Q ss_pred HHHHHHHHHHHcC----CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCccccccc
Q 004426 517 PYKYRAVAKMEEG----QIRAAISEIDRIIVFKL-SVDCLELRAWLFIA----ADDYESALRDTLALLALESNYMMFHGR 587 (754)
Q Consensus 517 ay~~rg~~l~~lg----~~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~----lgd~~~Al~d~~~al~l~P~~~~~~~~ 587 (754)
+++++|.+|.. + ++++|+..|.+|+ ++ ++.+++++|.+|.. .+|+++|+..|+++++.+|.. +.
T Consensus 52 a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~----~~ 124 (212)
T 3rjv_A 52 ALALLAQLKIR-NPQQADYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD----AA 124 (212)
T ss_dssp HHHHHHHHTTS-STTSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH----HH
T ss_pred HHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc----ch
Confidence 45555555554 3 4555555555554 23 24444555555544 455555555555555555421 00
Q ss_pred hhhhHHHHHHhhh----hccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHc-C-----CHH
Q 004426 588 VSGDHLVKLLNHH----VRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL-N-----CQK 657 (754)
Q Consensus 588 ~~~~~~~~~l~~~----~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~l-g-----~~e 657 (754)
..+...++.+... .+++++ |+..|++++++ |+++.+++++|.++... | +++
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~------------------A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~ 185 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVK------------------ASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQ 185 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHH------------------HHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHH------------------HHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHH
Confidence 1122222211111 111111 35556666666 56677889999998874 3 899
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHH
Q 004426 658 AAMRCLRLARNHSSSEHERLVYEGW 682 (754)
Q Consensus 658 eAl~~~~~Al~l~P~~~ea~~~~G~ 682 (754)
+|+..|++|.+.. +.++...++.
T Consensus 186 ~A~~~~~~A~~~g--~~~A~~~l~~ 208 (212)
T 3rjv_A 186 KALHWLNVSCLEG--FDTGCEEFDR 208 (212)
T ss_dssp HHHHHHHHHHHHT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHH
Confidence 9999999999986 4556665554
No 172
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.38 E-value=7.4e-13 Score=127.57 Aligned_cols=84 Identities=8% Similarity=0.040 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcC----
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQI----------RAAISEIDRIIVFKLS-VDCLELRAWLFIAAD---- 562 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~----------~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lg---- 562 (754)
++|+..|++|++++|+++.+|+++|.++.+++++ ++|+..|++||+++|+ .++++++|.+|..+|
T Consensus 19 eeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P 98 (158)
T 1zu2_A 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTP 98 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCc
Confidence 8999999999999999999999999999999886 5999999999999996 899999999999885
Q ss_pred -------CHHHHHHHHHHHHhcCCCc
Q 004426 563 -------DYESALRDTLALLALESNY 581 (754)
Q Consensus 563 -------d~~~Al~d~~~al~l~P~~ 581 (754)
++++|+..|++|++++|++
T Consensus 99 ~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 99 DETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred chhhhhccHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999986
No 173
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.38 E-value=4.7e-13 Score=128.96 Aligned_cols=94 Identities=13% Similarity=0.014 Sum_probs=85.4
Q ss_pred hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCH----------HHHHHHHHHHHhcCCCchhHHHHHHHHHHHcC------
Q 004426 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ----------KAAMRCLRLARNHSSSEHERLVYEGWILYDTG------ 688 (754)
Q Consensus 625 al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~----------eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G------ 688 (754)
|+..++++++++|+++++|++.|.+|..++++ ++|+..|++|++++|+++++++++|.+++.+|
T Consensus 21 A~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~ 100 (158)
T 1zu2_A 21 IRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDE 100 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcch
Confidence 58899999999999999999999999999886 59999999999999999999999999999985
Q ss_pred -----CHHHHHHHHHHHHhcCCChHHHHHHHHHhhc
Q 004426 689 -----HREEALSRAEKSISIERTFEAFFLKAYILAD 719 (754)
Q Consensus 689 -----~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~ 719 (754)
++++|++.|+||++|+|+++.| .+++.+++
T Consensus 101 ~~a~g~~~eA~~~~~kAl~l~P~~~~y-~~al~~~~ 135 (158)
T 1zu2_A 101 TEAKHNFDLATQFFQQAVDEQPDNTHY-LKSLEMTA 135 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHHH
T ss_pred hhhhccHHHHHHHHHHHHHhCCCCHHH-HHHHHHHH
Confidence 8999999999999999999855 44554443
No 174
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.37 E-value=2.6e-11 Score=148.63 Aligned_cols=253 Identities=9% Similarity=-0.008 Sum_probs=184.4
Q ss_pred HHHhhhhhhHhhccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCC------CHHHHHHhhh
Q 004426 420 LALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKP------TGWMYQERSL 493 (754)
Q Consensus 420 ~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~------~g~ay~~r~~ 493 (754)
..|+++|.++...|++++|+.+|.+| +...++...+.++...|++++|+..+..++...++ .|.+|...+.
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC
Confidence 36889999999999999999999875 66678888999999999999999999998876643 5666666543
Q ss_pred cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 494 YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLA 573 (754)
Q Consensus 494 y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~ 573 (754)
+ + ++++| + +..+...|.+.|..+.++|+|++|+..|++| ..|...+.++.++|++++|+..+++
T Consensus 1183 l---e-ele~f---I--~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1183 L---A-ELEEF---I--NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred H---H-HHHHH---H--hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3 3 45555 2 3445577889999999999999999999997 3566788899999999999999999
Q ss_pred HHhcCCCccc---cccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHH
Q 004426 574 LLALESNYMM---FHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLL 649 (754)
Q Consensus 574 al~l~P~~~~---~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~ 649 (754)
|...++=.-. .+........+..........+..+-.+..| .+.+.++ ++..++++|.++|.+...+..+|.+
T Consensus 1247 A~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yY---e~~G~feEAI~LlE~aL~LeraH~gmftELaiL 1323 (1630)
T 1xi4_A 1247 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYY---QDRGYFEELITMLEAALGLERAHMGMFTELAIL 1323 (1630)
T ss_pred hCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHH---HHcCCHHHHHHHHHHHhccChhHhHHHHHHHHH
Confidence 9554431000 0000000000000001111222222222333 3445555 7889999999999999999888887
Q ss_pred HHH--cCCHHHHHHHHHHHHhcCC-----CchhHHHHHHHHHHHcCCHHHHH
Q 004426 650 LLR--LNCQKAAMRCLRLARNHSS-----SEHERLVYEGWILYDTGHREEAL 694 (754)
Q Consensus 650 L~~--lg~~eeAl~~~~~Al~l~P-----~~~ea~~~~G~~ly~~G~~eeAl 694 (754)
+.+ -++..|+++.|...+++.| .+++.+.....++..-|+++.|+
T Consensus 1324 yaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 776 6778899999999999988 77877777777777889999999
No 175
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.37 E-value=1.8e-11 Score=109.51 Aligned_cols=130 Identities=22% Similarity=0.278 Sum_probs=106.5
Q ss_pred HHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChh
Q 004426 421 ALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR 498 (754)
Q Consensus 421 Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~ 498 (754)
+++.+|..+...|++++|+..|+++++..+ ..++..++.++...|++ +
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------------------------------~ 52 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY------------------------------D 52 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH------------------------------H
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCH------------------------------H
Confidence 456677777777788888877777777643 23444455555555544 6
Q ss_pred hHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLAL 577 (754)
Q Consensus 499 eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l 577 (754)
+|...|++++..+|++..++.++|.++...|++++|+..+++++...|+ +..+..++.++...|++++|+..|++++++
T Consensus 53 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 53 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6677778888888999999999999999999999999999999999995 788888999999999999999999999999
Q ss_pred CCC
Q 004426 578 ESN 580 (754)
Q Consensus 578 ~P~ 580 (754)
+|+
T Consensus 133 ~~~ 135 (136)
T 2fo7_A 133 DPR 135 (136)
T ss_dssp STT
T ss_pred CCC
Confidence 996
No 176
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.37 E-value=1.2e-11 Score=131.93 Aligned_cols=248 Identities=11% Similarity=0.008 Sum_probs=184.3
Q ss_pred hhccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHh
Q 004426 430 FEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASE 509 (754)
Q Consensus 430 ~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~ 509 (754)
+-.|.|..++....+.-..++......+.|.+..+|++... . ..+++..+......|.. .+|+..|++.++
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~-~~~~~~~a~~~la~~~~-~~a~~~l~~l~~ 94 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ-------D-PTSKLGKVLDLYVQFLD-TKNIEELENLLK 94 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC-------C-SSSTTHHHHHHHHHHHT-TTCCHHHHHTTT
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC-------C-CCCHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 44678887776433211112334566778999999987631 1 12234334333333433 348889999998
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccccc
Q 004426 510 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--S-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHG 586 (754)
Q Consensus 510 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p--~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~ 586 (754)
.++....++..+|.++...|++++|+..+.+.|..+| + .++....+.++..+|+.+.|.+.+++..+.+|+.. .+
T Consensus 95 ~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~--~~ 172 (310)
T 3mv2_B 95 DKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV--SG 172 (310)
T ss_dssp TSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH--HH
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc--cc
Confidence 8777788889999999999999999999999999887 4 56666777899999999999999999999999300 00
Q ss_pred chhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCC--ChhHHHhHHHHHHHcCCHHHHHHHH
Q 004426 587 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPG--KSFLRFRQSLLLLRLNCQKAAMRCL 663 (754)
Q Consensus 587 ~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~--~~~~~~~~g~~L~~lg~~eeAl~~~ 663 (754)
....... .|++|+.+...- +++. |..+|+++.+..|. .+..+++ ++.++|++++|.+.+
T Consensus 173 ~d~~l~~------------Laea~v~l~~g~---~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 173 DNEMILN------------LAESYIKFATNK---ETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHH------------HHHHHHHHHHTC---STTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHH
T ss_pred chHHHHH------------HHHHHHHHHhCC---ccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHH
Confidence 0111111 155666665542 2333 68899999888886 4556655 899999999999999
Q ss_pred HHHHhc----------CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 664 RLARNH----------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 664 ~~Al~l----------~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
++++++ +|++++++.|...+.+.+|+ +|-+.++|+..++|+..
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 988887 59999999999999999998 99999999999999876
No 177
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.1e-11 Score=114.26 Aligned_cols=120 Identities=12% Similarity=0.034 Sum_probs=85.4
Q ss_pred HHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 004426 507 ASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYM 582 (754)
Q Consensus 507 Ai~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~----~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~ 582 (754)
+...+|+.+..++.+|..+...|++++|+..|+++++++|+ ...+..+|.++..+|++++|+..|+++++++|++
T Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~- 98 (148)
T 2dba_A 20 PATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD- 98 (148)
T ss_dssp CCCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-
T ss_pred CCccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-
Confidence 44566778888888888888888888888888888888886 4555667777777777777777666666665543
Q ss_pred ccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHH
Q 004426 583 MFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRC 662 (754)
Q Consensus 583 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~ 662 (754)
+.+++++|.++..+|++++|+..
T Consensus 99 ---------------------------------------------------------~~~~~~~a~~~~~~~~~~~A~~~ 121 (148)
T 2dba_A 99 ---------------------------------------------------------VKALYRRSQALEKLGRLDQAVLD 121 (148)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 34566677777777777777777
Q ss_pred HHHHHhcCCCchhHHHHHHHHH
Q 004426 663 LRLARNHSSSEHERLVYEGWIL 684 (754)
Q Consensus 663 ~~~Al~l~P~~~ea~~~~G~~l 684 (754)
++++++++|++.+++..++.+.
T Consensus 122 ~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 122 LQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHH
Confidence 7777777777777666665553
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.32 E-value=5.5e-12 Score=115.42 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
++|+..|++|++++|+++.+|+++|.++..+|++++|+..|++|++++|+ +..++.+|.++..+|++++|+..|+++++
T Consensus 34 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 34 AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999996 88899999999999999999999999999
Q ss_pred cCCCcc
Q 004426 577 LESNYM 582 (754)
Q Consensus 577 l~P~~~ 582 (754)
++|++.
T Consensus 114 ~~P~~~ 119 (121)
T 1hxi_A 114 SQPQYE 119 (121)
T ss_dssp ------
T ss_pred hCcCCC
Confidence 999873
No 179
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.31 E-value=1.3e-11 Score=112.94 Aligned_cols=105 Identities=13% Similarity=0.124 Sum_probs=93.8
Q ss_pred cCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccc
Q 004426 544 FKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDD 622 (754)
Q Consensus 544 l~p-~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d 622 (754)
.+| ++..+...|.++...|++++|+..|+++++++|++
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----------------------------------------- 42 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----------------------------------------- 42 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------------------------------
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc-----------------------------------------
Confidence 345 47778889999999999999988887777777754
Q ss_pred cchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 623 IGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (754)
Q Consensus 623 ~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~ 702 (754)
+.+|+++|.++..+|++++|+..+++|++++|+++.+++++|.+++.+|++++|+..|+++++
T Consensus 43 -----------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 43 -----------------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp -----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 004426 703 IERT 706 (754)
Q Consensus 703 l~~~ 706 (754)
+.|+
T Consensus 106 ~~p~ 109 (137)
T 3q49_B 106 LAKE 109 (137)
T ss_dssp HHHH
T ss_pred HChh
Confidence 9887
No 180
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.31 E-value=4.4e-11 Score=112.35 Aligned_cols=134 Identities=18% Similarity=0.204 Sum_probs=110.1
Q ss_pred HHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcc--hhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhc
Q 004426 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY 494 (754)
Q Consensus 417 qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~--~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y 494 (754)
..+..++.+|..+...|++++|+..|+++++..+ ..++.++|.++...|++
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~--------------------------- 63 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY--------------------------- 63 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------------------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH---------------------------
Confidence 3456778888888889999999999998888754 34556666666666655
Q ss_pred CChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHH--HHHHHHHHcCCHHHHHHHH
Q 004426 495 NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLE--LRAWLFIAADDYESALRDT 571 (754)
Q Consensus 495 ~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~--~ra~~~~~lgd~~~Al~d~ 571 (754)
++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ ...+. .++..+...|++++|+..+
T Consensus 64 ---~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 140 (166)
T 1a17_A 64 ---GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 140 (166)
T ss_dssp ---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 66777788899999999999999999999999999999999999999995 66553 3555688999999999999
Q ss_pred HHHHhcCCC
Q 004426 572 LALLALESN 580 (754)
Q Consensus 572 ~~al~l~P~ 580 (754)
.++..+-+.
T Consensus 141 ~~~~~~~~~ 149 (166)
T 1a17_A 141 EHKRSVVDS 149 (166)
T ss_dssp HHHHHHHHH
T ss_pred cchHHHhcc
Confidence 998876554
No 181
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.30 E-value=5e-11 Score=104.67 Aligned_cols=111 Identities=16% Similarity=0.092 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHH
Q 004426 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 593 (754)
Q Consensus 515 ~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~ 593 (754)
+.+++.+|.++...|++++|+..|++++.++|+ +..+..+|.++..+|++++|+..|+++++++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------ 71 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW------------ 71 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc------------
Confidence 455666666666666666666666666666663 5555666666666666666666555555554432
Q ss_pred HHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 673 (754)
Q Consensus 594 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 673 (754)
+.+++++|.++..+|++++|+..++++++++|++
T Consensus 72 ----------------------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 72 ----------------------------------------------GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 3345556666666666666666666666666666
Q ss_pred hhHHHHHHHH
Q 004426 674 HERLVYEGWI 683 (754)
Q Consensus 674 ~ea~~~~G~~ 683 (754)
..++..+|.+
T Consensus 106 ~~~~~~l~~~ 115 (118)
T 1elw_A 106 PQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666655544
No 182
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.30 E-value=1.1e-11 Score=120.67 Aligned_cols=167 Identities=11% Similarity=-0.061 Sum_probs=128.8
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF------KLS-VDCLELRAWLFIAADDYESALRD 570 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l------~p~-~~~~~~ra~~~~~lgd~~~Al~d 570 (754)
++|...++......+..+.++.++|.++..+|++++|+..+++++++ .|. ...+.++|.++..+|++++|+..
T Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 88 (203)
T 3gw4_A 9 ALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRC 88 (203)
T ss_dssp HHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 67776444444433377889999999999999999999999999984 232 45677788999999999999999
Q ss_pred HHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCC-CChhHHHhHHHH
Q 004426 571 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP-GKSFLRFRQSLL 649 (754)
Q Consensus 571 ~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P-~~~~~~~~~g~~ 649 (754)
|++++++.... ++ +| ..+.+++++|.+
T Consensus 89 ~~~al~~~~~~---------------------------------------~~-------------~~~~~~~~~~~lg~~ 116 (203)
T 3gw4_A 89 FLEERELLASL---------------------------------------PE-------------DPLAASANAYEVATV 116 (203)
T ss_dssp HHHHHHHHHHS---------------------------------------CC-------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---------------------------------------Cc-------------cHHHHHHHHHHHHHH
Confidence 99988876643 00 01 124578899999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 004426 650 LLRLNCQKAAMRCLRLARNHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 716 (754)
Q Consensus 650 L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~ 716 (754)
+..+|++++|++.+++|+++.+.. +.++.++|.++..+|++++|+..+++|+++.+....-+..+.+
T Consensus 117 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 189 (203)
T 3gw4_A 117 ALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNEL 189 (203)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999875432 3456899999999999999999999999985554433333333
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.30 E-value=1.5e-11 Score=135.04 Aligned_cols=124 Identities=11% Similarity=0.081 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------cCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIV----------------FKLS-VDCLELRAWLFIAADDYESALRDTLALLAL 577 (754)
Q Consensus 515 ~~ay~~rg~~l~~lg~~~eAl~~~~rAl~----------------l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l 577 (754)
+..|.++|.++...|++++|+..|++||+ ++|. ...+.++|.++..+|++++|+.+|++|+++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999 6664 677888899999999999998888888777
Q ss_pred CCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHH
Q 004426 578 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 657 (754)
Q Consensus 578 ~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~e 657 (754)
+|++ +.+|+++|.++..+|+++
T Consensus 303 ~p~~----------------------------------------------------------~~a~~~lg~~~~~~g~~~ 324 (370)
T 1ihg_A 303 DPSN----------------------------------------------------------TKALYRRAQGWQGLKEYD 324 (370)
T ss_dssp CTTC----------------------------------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred Cchh----------------------------------------------------------HHHHHHHHHHHHHccCHH
Confidence 7754 467889999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHH
Q 004426 658 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSR 696 (754)
Q Consensus 658 eAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ 696 (754)
+|+..|++|++++|++.+++..++.++..+|+++++...
T Consensus 325 eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 325 QALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998887653
No 184
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.29 E-value=2.8e-11 Score=109.08 Aligned_cols=113 Identities=9% Similarity=-0.008 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHH
Q 004426 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (754)
Q Consensus 548 ~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 627 (754)
+..+..+|.++...|++++|+..|+++++++|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---------------------------------------------- 49 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---------------------------------------------- 49 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC----------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----------------------------------------------
Confidence 5667778888888888888888877777777654
Q ss_pred HHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004426 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (754)
Q Consensus 628 ~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~ 707 (754)
+.+++++|.++..+|++++|+..++++++++|+++.+++++|.+++.+|++++|+..|++++.++|+.
T Consensus 50 ------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 50 ------------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp ------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred ------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 46788999999999999999999999999999999999999999999999999999999999999987
Q ss_pred H-HHHHHHHHhh
Q 004426 708 E-AFFLKAYILA 718 (754)
Q Consensus 708 ~-a~~~~~~~~~ 718 (754)
. +++..|.++.
T Consensus 118 ~~~~~~l~~~~~ 129 (133)
T 2lni_A 118 KEAADGYQRCMM 129 (133)
T ss_dssp THHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 5 7777776654
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.29 E-value=2e-12 Score=146.72 Aligned_cols=96 Identities=21% Similarity=0.215 Sum_probs=87.1
Q ss_pred CHHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcC
Q 004426 484 TGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAAD 562 (754)
Q Consensus 484 ~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lg 562 (754)
.|..+...+.| ++|+..|++|++++|+++.+|.++|.++.++|++++|+..|++|++++|+ +..++++|.++..+|
T Consensus 12 lg~~~~~~g~~---~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDY---ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCH---HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44444555444 89999999999999999999999999999999999999999999999996 888999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcc
Q 004426 563 DYESALRDTLALLALESNYM 582 (754)
Q Consensus 563 d~~~Al~d~~~al~l~P~~~ 582 (754)
++++|+..|+++++++|++.
T Consensus 89 ~~~eA~~~~~~al~~~p~~~ 108 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDK 108 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCT
T ss_pred CHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999874
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.29 E-value=5.2e-12 Score=114.02 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=91.6
Q ss_pred hHHHHHHHHHc---CCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 625 SLAVINQMLIN---DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (754)
Q Consensus 625 al~~~~~aL~l---~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai 701 (754)
|+..|+++|++ +|.++.+++++|.++..+|++++|+..+++|++++|+++++++++|.+++.+|++++|+..+++++
T Consensus 9 A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp CHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 68999999999 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChH--HHHHHHHHhhccCCCC
Q 004426 702 SIERTFE--AFFLKAYILADTNLDP 724 (754)
Q Consensus 702 ~l~~~~~--a~~~~~~~~~~~~~~~ 724 (754)
++.|+.. ..+.+++......+|.
T Consensus 89 ~~~p~~~~~~~~~~ai~~~~~~l~~ 113 (117)
T 3k9i_A 89 AETSDDETIQSYKQAILFYADKLDE 113 (117)
T ss_dssp HHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999886 4566776666555554
No 187
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.29 E-value=1.6e-11 Score=107.07 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=48.1
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 510 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESN 580 (754)
Q Consensus 510 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~ 580 (754)
++|+++.+|..+|.++...|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|+
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 46777777777777777777777777777777777764 555666666666666666666666655555554
No 188
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.28 E-value=5.7e-11 Score=107.41 Aligned_cols=118 Identities=10% Similarity=-0.039 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhh
Q 004426 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-V---DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 591 (754)
Q Consensus 516 ~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~---~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~ 591 (754)
.+++++|.++...|++++|+..|+++++.+|+ + ..++.+|.++..+|++++|+..|+++++++|++.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~--------- 73 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD--------- 73 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---------
Confidence 34566666666666666666666666666664 3 4556666666666666666666666666666541
Q ss_pred HHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 592 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 671 (754)
Q Consensus 592 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 671 (754)
..+.+++++|.++..+|++++|+..++++++..|
T Consensus 74 ----------------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 74 ----------------------------------------------KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp ----------------------------------------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred ----------------------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 1134456666666666666666666666666666
Q ss_pred CchhHHHHHHHHHHHcC
Q 004426 672 SEHERLVYEGWILYDTG 688 (754)
Q Consensus 672 ~~~ea~~~~G~~ly~~G 688 (754)
++..+...+..+-.-.+
T Consensus 108 ~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 108 GSDAARVAQERLQSIRL 124 (129)
T ss_dssp TSHHHHHHHHHHHHHC-
T ss_pred CChHHHHHHHHHHHHHh
Confidence 66666555555444433
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.27 E-value=1.6e-11 Score=113.54 Aligned_cols=140 Identities=14% Similarity=0.068 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccc
Q 004426 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-------DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 587 (754)
Q Consensus 515 ~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~-------~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~ 587 (754)
+.++.++|.++...|++++|+..+++++++.+.. ..+...|.++..+|++++|+..|++++++.|+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----- 83 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK----- 83 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-----
Confidence 5688999999999999999999999999986531 3567789999999999999999999999877530
Q ss_pred hhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 004426 588 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (754)
Q Consensus 588 ~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 667 (754)
+. +..+.+++++|.++..+|++++|+..+++|+
T Consensus 84 ----------------------------------~~-------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 84 ----------------------------------DR-------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp ----------------------------------CH-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------------------------Cc-------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 00 1114568889999999999999999999999
Q ss_pred hcCCC------chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 668 NHSSS------EHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (754)
Q Consensus 668 ~l~P~------~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~ 706 (754)
++.+. .+.++.++|.+++.+|++++|+..+++++++.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 117 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 88543 3678999999999999999999999999988654
No 190
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.26 E-value=6.4e-11 Score=107.09 Aligned_cols=104 Identities=14% Similarity=0.023 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHH
Q 004426 550 CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVI 629 (754)
Q Consensus 550 ~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~ 629 (754)
.++.+|..+...|++++|+..|+++++.+|++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------------------------------------------------ 35 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG------------------------------------------------ 35 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS------------------------------------------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC------------------------------------------------
Confidence 35678888999999999999999888888875
Q ss_pred HHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 630 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (754)
Q Consensus 630 ~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~ 706 (754)
|..+.+++++|.++..+|++++|+..|+++++.+|++ +++++++|.+++.+|++++|+..|++++.+.|+
T Consensus 36 -------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 36 -------VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp -------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred -------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 1123678899999999999999999999999999999 899999999999999999999999999999998
Q ss_pred hH
Q 004426 707 FE 708 (754)
Q Consensus 707 ~~ 708 (754)
..
T Consensus 109 ~~ 110 (129)
T 2xev_A 109 SD 110 (129)
T ss_dssp SH
T ss_pred Ch
Confidence 77
No 191
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.26 E-value=1.2e-10 Score=103.94 Aligned_cols=114 Identities=11% Similarity=0.017 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHH
Q 004426 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (754)
Q Consensus 548 ~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 627 (754)
+..+...|..+...|++++|+..|+++++++|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------------------------- 45 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---------------------------------------------- 45 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------------
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----------------------------------------------
Confidence 4566778888888888888888777777766653
Q ss_pred HHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004426 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (754)
Q Consensus 628 ~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~ 707 (754)
+.+++++|.++..+|++++|+..++++++++|+++.+++.+|.+++.+|++++|+..|++++.+.|+.
T Consensus 46 ------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 46 ------------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred ------------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence 56788899999999999999999999999999999999999999999999999999999999999976
Q ss_pred H-HHHHHHHHhhc
Q 004426 708 E-AFFLKAYILAD 719 (754)
Q Consensus 708 ~-a~~~~~~~~~~ 719 (754)
. +++..|.++..
T Consensus 114 ~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 114 ETYKSNLKIAELK 126 (131)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 6 88877776643
No 192
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.25 E-value=5e-11 Score=104.67 Aligned_cols=108 Identities=14% Similarity=-0.051 Sum_probs=93.8
Q ss_pred hhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHc
Q 004426 609 CWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT 687 (754)
Q Consensus 609 ~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~ 687 (754)
.|..++..+...++++ |+..+++++..+|.++.+++++|.++..+|++++|+..++++++++|+++.+++++|.+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3444444444445555 688999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCChH-HHHHHHHH
Q 004426 688 GHREEALSRAEKSISIERTFE-AFFLKAYI 716 (754)
Q Consensus 688 G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~ 716 (754)
|++++|+..|++++++.|+.. +++..+.+
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 999999999999999999887 55555443
No 193
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.24 E-value=5.2e-12 Score=114.01 Aligned_cols=108 Identities=17% Similarity=0.128 Sum_probs=71.0
Q ss_pred cCCHHHHHHHHHHHHHc---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhcc
Q 004426 528 EGQIRAAISEIDRIIVF---KLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRS 603 (754)
Q Consensus 528 lg~~~eAl~~~~rAl~l---~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~ 603 (754)
+|++++|+..|++|+++ +|+ +..+.++|.++..+|++++|+..|+++++++|++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------------- 60 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---------------------- 60 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------------------
Confidence 56677777777777777 353 4556667777777777777776666666555543
Q ss_pred ccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 004426 604 WSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI 683 (754)
Q Consensus 604 ~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ 683 (754)
+.+++++|.++..+|++++|+..++++++..|+++++..+..-+
T Consensus 61 ------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 61 ------------------------------------QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred ------------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45667777777777777777777777777777777776666666
Q ss_pred HHHcCCHHHH
Q 004426 684 LYDTGHREEA 693 (754)
Q Consensus 684 ly~~G~~eeA 693 (754)
.+..+.+++.
T Consensus 105 ~~~~~~l~~~ 114 (117)
T 3k9i_A 105 LFYADKLDET 114 (117)
T ss_dssp HHHTTCTTCC
T ss_pred HHHHHHHHHH
Confidence 6655555543
No 194
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.24 E-value=1.8e-10 Score=101.85 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHH
Q 004426 548 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 627 (754)
Q Consensus 548 ~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 627 (754)
...++..|.++...|++++|+..|+++++.+|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------------------------- 42 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------------------------------------- 42 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----------------------------------------------
Confidence 4667778888888888888888777777766643
Q ss_pred HHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004426 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (754)
Q Consensus 628 ~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~ 707 (754)
+.+++++|.++...|++++|+..++++++.+|+++.+++++|.+++.+|++++|+..|++++.+.|+.
T Consensus 43 ------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 43 ------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 45678899999999999999999999999999999999999999999999999999999999999988
Q ss_pred H-HHHHHHHHhh
Q 004426 708 E-AFFLKAYILA 718 (754)
Q Consensus 708 ~-a~~~~~~~~~ 718 (754)
. +++..|.++.
T Consensus 111 ~~~~~~l~~~~~ 122 (125)
T 1na0_A 111 AEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 7 7777776653
No 195
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.23 E-value=3.2e-12 Score=142.20 Aligned_cols=239 Identities=10% Similarity=0.040 Sum_probs=106.8
Q ss_pred HHhhhhhhHhhccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHc------cCCCHHHHHHhhhc
Q 004426 421 ALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISE------HKPTGWMYQERSLY 494 (754)
Q Consensus 421 Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~------~~~~g~ay~~r~~y 494 (754)
.|.++|.+++..|++++|++.|.++ +....+...++.....|++++|+..+..+++. .+.++.+|...|.+
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l 110 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRL 110 (449)
T ss_dssp ------------------------------------------------------------------------------CH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCH
Confidence 5566666666666666666666543 22234455555555666666666655555432 12223333333222
Q ss_pred -------------------------CChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHH
Q 004426 495 -------------------------NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD 549 (754)
Q Consensus 495 -------------------------~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~ 549 (754)
+..++|...|+++ ..|..+|.++.++|++++|++.|.+| .++.
T Consensus 111 ~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~ 178 (449)
T 1b89_A 111 AELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA----NSTR 178 (449)
T ss_dssp HHHTTTTTCC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH----TCHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc----CCch
Confidence 0114444444444 24445555555555555555555555 1344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHH
Q 004426 550 CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAV 628 (754)
Q Consensus 550 ~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~ 628 (754)
.|.....++...|+++.|.....+ +...|++ ..-.+.+|.+ .+.+. ++..
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~-------------------------l~~lv~~Yek---~G~~eEai~l 229 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLH-IVVHADE-------------------------LEELINYYQD---RGYFEELITM 229 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH-------------------------HHHHHHHHHH---TTCHHHHHHH
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh-------------------------HHHHHHHHHH---CCCHHHHHHH
Confidence 444444444555555555443332 2233332 1111223322 23333 4889
Q ss_pred HHHHHHcCCCChhHHHhHHHHHHH--cCCHHHHHHHHHHHHhcCC-----CchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 629 INQMLINDPGKSFLRFRQSLLLLR--LNCQKAAMRCLRLARNHSS-----SEHERLVYEGWILYDTGHREEALSRAEKSI 701 (754)
Q Consensus 629 ~~~aL~l~P~~~~~~~~~g~~L~~--lg~~eeAl~~~~~Al~l~P-----~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai 701 (754)
++++|.++|.+...+..+|.++.+ .++..|+++.|...+++.| .++..+..+..+++.-|+||.|+...-+..
T Consensus 230 Le~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 230 LEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence 999999999999999999999887 7788899999999999999 999999999999999999999987665554
Q ss_pred hc
Q 004426 702 SI 703 (754)
Q Consensus 702 ~l 703 (754)
.-
T Consensus 310 ~~ 311 (449)
T 1b89_A 310 TD 311 (449)
T ss_dssp TT
T ss_pred hh
Confidence 33
No 196
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=9e-11 Score=107.98 Aligned_cols=116 Identities=17% Similarity=0.119 Sum_probs=102.2
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhcccccccc
Q 004426 545 KLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDI 623 (754)
Q Consensus 545 ~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~ 623 (754)
+|+ ...++.+|..+...|++++|+..|+++++++|++.
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------------------------------- 62 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ----------------------------------------- 62 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-----------------------------------------
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch-----------------------------------------
Confidence 453 67788899999999999999999999999999740
Q ss_pred chHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 624 GSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 624 ~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
..+.+++++|.++..+|++++|+..++++++++|+++.+++++|.+++.+|++++|+..|++++++
T Consensus 63 --------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 63 --------------DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp --------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 024678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChH-HHHHHHH
Q 004426 704 ERTFE-AFFLKAY 715 (754)
Q Consensus 704 ~~~~~-a~~~~~~ 715 (754)
+|+.. +....+-
T Consensus 129 ~p~~~~~~~~l~~ 141 (148)
T 2dba_A 129 EPKNKVFQEALRN 141 (148)
T ss_dssp CSSCHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 99876 4444433
No 197
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.21 E-value=7.6e-11 Score=105.51 Aligned_cols=125 Identities=9% Similarity=-0.021 Sum_probs=105.2
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhh
Q 004426 512 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG 590 (754)
Q Consensus 512 P~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~ 590 (754)
|+.+..|+.+|.++...|++++|+..|++++.++|+ +..+..+|.++..+|++++|+..|+++++++|++..
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------- 73 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE------- 73 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-------
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch-------
Confidence 345678999999999999999999999999999995 788889999999999999999999999999986410
Q ss_pred hHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 591 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS 670 (754)
Q Consensus 591 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~ 670 (754)
+. +..+.+++++|.++..+|++++|+..+++++++.
T Consensus 74 -------------------------------~~-------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 74 -------------------------------DY-------------RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp -------------------------------CH-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -------------------------------hH-------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 00 0114568889999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHcC
Q 004426 671 SSEHERLVYEGWILYDTG 688 (754)
Q Consensus 671 P~~~ea~~~~G~~ly~~G 688 (754)
| +.+....++.+.-.++
T Consensus 110 ~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 110 R-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp C-CHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHH
Confidence 9 5788888877765543
No 198
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.20 E-value=7.7e-11 Score=102.63 Aligned_cols=98 Identities=13% Similarity=0.071 Sum_probs=81.0
Q ss_pred hhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHH
Q 004426 610 WIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS--EHERLVYEGWILYD 686 (754)
Q Consensus 610 ~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~--~~ea~~~~G~~ly~ 686 (754)
|..++......+++. |+..++++++++|.++.+++++|.++..+|++++|+..++++++++|+ +.++++++|.++..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 333333333444444 588899999999999999999999999999999999999999999999 99999999999999
Q ss_pred c-CCHHHHHHHHHHHHhcCCCh
Q 004426 687 T-GHREEALSRAEKSISIERTF 707 (754)
Q Consensus 687 ~-G~~eeAl~~~e~Ai~l~~~~ 707 (754)
+ |++++|++.+++++...|+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp CSSCSHHHHHHHHHHGGGCCCC
T ss_pred HhCCHHHHHHHHHHHhhcccCC
Confidence 9 99999999999999888864
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.19 E-value=3e-11 Score=130.62 Aligned_cols=154 Identities=14% Similarity=-0.010 Sum_probs=89.2
Q ss_pred HHHHHhhhhhhHhhccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCCh
Q 004426 418 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 497 (754)
Q Consensus 418 ka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g 497 (754)
.+..++++|..++..|+|++|+..|++|+.+.+.... +...|++.++...+.. ..+-+.|.+|...+.|
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~------~~~~~~~~~~~~~l~~--~~~~nla~~~~~~g~~--- 246 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM------FQLYGKYQDMALAVKN--PCHLNIAACLIKLKRY--- 246 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH------HTCCHHHHHHHHHHHT--HHHHHHHHHHHTTTCC---
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh------hhhcccHHHHHHHHHH--HHHHHHHHHHHHcCCH---
Confidence 4567889999999999999999999999998654331 1122333333332221 1233456666666666
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHH-HHHcCCHHHHHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWL-FIAADDYESALRDTLALL 575 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~-~~~lgd~~~Al~d~~~al 575 (754)
++|+..|++|++++|+++.+|+++|.++..+|++++|+.+|++|++++|+ +..+..++.+ ....+..++|...|++++
T Consensus 247 ~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 247 DEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999996 6666777766 566778899999999999
Q ss_pred hcCCCcc
Q 004426 576 ALESNYM 582 (754)
Q Consensus 576 ~l~P~~~ 582 (754)
..+|++.
T Consensus 327 ~~~p~~~ 333 (338)
T 2if4_A 327 KGKDEGG 333 (338)
T ss_dssp -------
T ss_pred CCCCCCC
Confidence 9999873
No 200
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.19 E-value=3.8e-10 Score=118.36 Aligned_cols=161 Identities=7% Similarity=-0.098 Sum_probs=125.7
Q ss_pred HHHhhhhhhHhhccchHHHHHHHHHHhhhcch--------hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCC------H
Q 004426 420 LALHQLGCVMFEREEYKDACYYFEAAADAGHI--------YSLAGLARAKYKVGQQYSAYKLINSIISEHKPT------G 485 (754)
Q Consensus 420 ~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~--------~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~------g 485 (754)
..+...+..+...|+|++|+..+.++++..+. ..+.++|.++...|++++|+..+.+++...+.. +
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34566788889999999999999999887321 234567888888999999999999998764322 3
Q ss_pred HHHHHhhh----cCChhhHHHHHHHHH---hhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------
Q 004426 486 WMYQERSL----YNLGREKIVDLNYAS---ELDPTLS----FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS------- 547 (754)
Q Consensus 486 ~ay~~r~~----y~~g~eAl~dl~kAi---~LdP~~~----~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~------- 547 (754)
.++.+.|. .+..++|+..|++|+ +..|+.. .+|+++|.++..+|++++|+..+++|+.+.++
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 34444432 122389999999999 5566643 69999999999999999999999999988653
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCC
Q 004426 548 VDCLELRAWLFIAADDYESA-LRDTLALLALESN 580 (754)
Q Consensus 548 ~~~~~~ra~~~~~lgd~~~A-l~d~~~al~l~P~ 580 (754)
..++++.|.++..+|++++| ...|++|+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999 6779999987643
No 201
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.18 E-value=1.7e-11 Score=136.45 Aligned_cols=239 Identities=13% Similarity=0.008 Sum_probs=95.9
Q ss_pred hhHhhccchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHc--cCCCHHHHHHhhhcCChhhHHHHH
Q 004426 427 CVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISE--HKPTGWMYQERSLYNLGREKIVDL 504 (754)
Q Consensus 427 ~v~~~~g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~--~~~~g~ay~~r~~y~~g~eAl~dl 504 (754)
++....|++++|.+.+++. ++..+|..+|.++...|++.+|+..|.++... +...+.++...+.+ ++|+..+
T Consensus 11 ~ll~~~~~ld~A~~fae~~---~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~---EeAi~yl 84 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNW---EELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhC---CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCH---HHHHHHH
Confidence 3444677899999988875 66679999999999999999999988764211 11223333333333 8888888
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccc
Q 004426 505 NYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMF 584 (754)
Q Consensus 505 ~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~ 584 (754)
..+.+..|+ +.....++.+|.++|++.++..-++ .|+...+...|..+...|+|++|+..|.++ ++
T Consensus 85 ~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----~n---- 150 (449)
T 1b89_A 85 QMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----SN---- 150 (449)
T ss_dssp -------------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHT----TC----
T ss_pred HHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----hh----
Confidence 888875444 7778888888888888888776665 366667888888888888888888888876 22
Q ss_pred ccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHH
Q 004426 585 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCL 663 (754)
Q Consensus 585 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~ 663 (754)
|..+.+.+...+++. |+..+.+| +++..|-..+.+...+|+++.|..+.
T Consensus 151 -------------------------~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~ 200 (449)
T 1b89_A 151 -------------------------FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCG 200 (449)
T ss_dssp -------------------------HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTT
T ss_pred -------------------------HHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHH
Confidence 233333333444444 67788888 57888988889999999999998877
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHhhc
Q 004426 664 RLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILAD 719 (754)
Q Consensus 664 ~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~~~~~ 719 (754)
.. +...|++ +.....++.+.|+++||+..+|+++.++|.-. .|...|++++-
T Consensus 201 l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 201 LH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp TT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred HH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 74 4455555 44577788999999999999999999999887 88887766643
No 202
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.17 E-value=5.9e-11 Score=130.21 Aligned_cols=127 Identities=13% Similarity=-0.008 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHH
Q 004426 549 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV 628 (754)
Q Consensus 549 ~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~ 628 (754)
..+..+|..+...|+|++|+..|++|+++.|... . ...
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------------~------------------~~~ 261 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------------A------------------AAE 261 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------------H------------------HSC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------------c------------------ccC
Confidence 3467789999999999999999999999887541 0 011
Q ss_pred HHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 629 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 629 ~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
.++...++|.++.+|+++|.++.++|++++|+..+++|++++|+++.+++++|.+++.+|++++|+..|++|++++|+..
T Consensus 262 ~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 262 DADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 45666788899999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred -HHHHHHHHh
Q 004426 709 -AFFLKAYIL 717 (754)
Q Consensus 709 -a~~~~~~~~ 717 (754)
+....+.++
T Consensus 342 ~~~~~l~~~~ 351 (370)
T 1ihg_A 342 AIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 555555444
No 203
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.16 E-value=6.4e-11 Score=104.98 Aligned_cols=81 Identities=32% Similarity=0.445 Sum_probs=65.4
Q ss_pred EEEEE-CCeEEehhhHHHhhcCHHHHHhhcC--CCCCCCcceEEecCCCCCHHHHHHHHHHhh-----c---CCCCC--C
Q 004426 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYG--GFVESKRKTIDFSHDGVSVEGLRAVEVYTR-----T---SRVDL--F 286 (754)
Q Consensus 220 V~f~V-~g~~f~aHR~iLaa~S~yF~aMf~~--~~~Es~~~~I~l~~~~vs~~~f~~lL~ylY-----T---g~l~~--i 286 (754)
|+++- +|++|.+||.+ |..|+||++||.+ ++.|+....|.| ++|++.+++.|++|+| + +.+.. +
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l--~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNF--REIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEEC--TTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceEC--CCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 56654 78999999999 9999999999987 788888889999 9999999999999999 5 45542 7
Q ss_pred ChhHHHHHHHHhchhCh
Q 004426 287 CPGIVLELLSFANRFCC 303 (754)
Q Consensus 287 ~~~~vlelL~aA~~f~l 303 (754)
+.+++++|+.+||++++
T Consensus 81 ~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 APEIALELLMAANFLDC 97 (97)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhhhCC
Confidence 78999999999999874
No 204
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.15 E-value=7.3e-10 Score=120.36 Aligned_cols=91 Identities=11% Similarity=0.032 Sum_probs=80.4
Q ss_pred HHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 004426 631 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAF 710 (754)
Q Consensus 631 ~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~ 710 (754)
.++..+|.++.+|.-.|..+...|++++|++.+++|++++|+ +.++..+|+++...|++++|++.|++|+.++|+.+.|
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 345788999999999999999999999999999999999985 7899999999999999999999999999999999988
Q ss_pred HHHHHHhhccCC
Q 004426 711 FLKAYILADTNL 722 (754)
Q Consensus 711 ~~~~~~~~~~~~ 722 (754)
++-.-..=.|||
T Consensus 347 ~~~~~l~F~sn~ 358 (372)
T 3ly7_A 347 YWIENGIFQTSV 358 (372)
T ss_dssp HHHHHSSSCCCH
T ss_pred HHHhCceeecch
Confidence 775544444443
No 205
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.13 E-value=1.9e-10 Score=102.93 Aligned_cols=110 Identities=13% Similarity=-0.007 Sum_probs=94.9
Q ss_pred hhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------hhHHH
Q 004426 607 ADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE-------HERLV 678 (754)
Q Consensus 607 A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-------~ea~~ 678 (754)
+.+|..++......+++. |+..+++++..+|.++.+++++|.++..+|++++|+..+++++++.|++ +.+++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344455555555555655 6889999999999999999999999999999999999999999999988 99999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 004426 679 YEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 716 (754)
Q Consensus 679 ~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~ 716 (754)
++|.+++.+|++++|+..|++++.+.|+.......+.+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999987665554443
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.11 E-value=1.6e-10 Score=103.31 Aligned_cols=84 Identities=19% Similarity=0.170 Sum_probs=80.8
Q ss_pred hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 704 (754)
Q Consensus 625 al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~ 704 (754)
++..++++++.+|.++.+++++|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+..|++++++.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CChH
Q 004426 705 RTFE 708 (754)
Q Consensus 705 ~~~~ 708 (754)
|+..
T Consensus 84 ~~~~ 87 (115)
T 2kat_A 84 QSRG 87 (115)
T ss_dssp HHHT
T ss_pred cccc
Confidence 8643
No 207
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.10 E-value=6.1e-10 Score=116.77 Aligned_cols=137 Identities=11% Similarity=-0.021 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-H------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc-ccccch
Q 004426 517 PYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-V------DCLELRAWLFIAADDYESALRDTLALLALESNYM-MFHGRV 588 (754)
Q Consensus 517 ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~------~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~-~~~~~~ 588 (754)
.|..+|.++...|++++|+..|++|+.+.+. . .++.+.|.+|..+|++++|+..|++|+++-.... .-....
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 4556899999999999999999999997542 1 2577899999999999999999999997433210 011122
Q ss_pred hhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCC------hhHHHhHHHHHHHcCC-HHHHHH
Q 004426 589 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK------SFLRFRQSLLLLRLNC-QKAAMR 661 (754)
Q Consensus 589 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~------~~~~~~~g~~L~~lg~-~eeAl~ 661 (754)
.+....+.+....+++++ |+..++++|++.+.. +.+++++|.++.++|+ +++|+.
T Consensus 197 ~~~~nlg~~y~~~~~y~~------------------A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEE------------------SLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHHHHTTCHHH------------------HHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHH------------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 234444444444444444 488999999988655 8899999999999995 699999
Q ss_pred HHHHHHhcCC
Q 004426 662 CLRLARNHSS 671 (754)
Q Consensus 662 ~~~~Al~l~P 671 (754)
.|++|+.+..
T Consensus 259 ~~~~Al~i~~ 268 (293)
T 3u3w_A 259 AYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999997653
No 208
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.10 E-value=3.2e-10 Score=110.25 Aligned_cols=169 Identities=8% Similarity=-0.113 Sum_probs=117.4
Q ss_pred HHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhh----cCChhhHHHHHHHHHh------hCCCChHHHHHHHHHHHHcCC
Q 004426 461 KYKVGQQYSAYKLINSIISEHKPTGWMYQERSL----YNLGREKIVDLNYASE------LDPTLSFPYKYRAVAKMEEGQ 530 (754)
Q Consensus 461 ~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~----y~~g~eAl~dl~kAi~------LdP~~~~ay~~rg~~l~~lg~ 530 (754)
.+..|++.+|...+..........+.++...+. .+..++|+..|++|++ ..|..+.++.++|.++..+|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356789999988443333322244555555542 1233899999999999 677888999999999999999
Q ss_pred HHHHHHHHHHHHHc---CC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhc
Q 004426 531 IRAAISEIDRIIVF---KL-S----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR 602 (754)
Q Consensus 531 ~~eAl~~~~rAl~l---~p-~----~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~ 602 (754)
+++|+..+++++++ .+ + ...+.+.|.++..+|++++|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A----------------------------------- 126 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGA----------------------------------- 126 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHH-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHH-----------------------------------
Confidence 99999999999998 33 2 23456678888888877654
Q ss_pred cccchhhhhhhhhccccccccchHHHHHHHHHcCCC------ChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 004426 603 SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG------KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER 676 (754)
Q Consensus 603 ~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~------~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 676 (754)
+..+++++++.+. .+.++.++|.++..+|++++|++.+++|+++.....+.
T Consensus 127 -----------------------~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 183 (203)
T 3gw4_A 127 -----------------------RQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDS 183 (203)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred -----------------------HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 2334444433211 13456899999999999999999999999987765544
Q ss_pred HHHHHHHHHHcC
Q 004426 677 LVYEGWILYDTG 688 (754)
Q Consensus 677 ~~~~G~~ly~~G 688 (754)
+..+.++..++
T Consensus 184 -~~~~~~~~~~~ 194 (203)
T 3gw4_A 184 -EAVNELMTRLN 194 (203)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHhccc
Confidence 34555554443
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.09 E-value=4e-10 Score=100.75 Aligned_cols=84 Identities=12% Similarity=-0.035 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
.+|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+ +..++.+|.++..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999996 78889999999999999999999999999
Q ss_pred cCCCc
Q 004426 577 LESNY 581 (754)
Q Consensus 577 l~P~~ 581 (754)
++|+.
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 99975
No 210
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.05 E-value=5.7e-10 Score=122.23 Aligned_cols=217 Identities=13% Similarity=0.044 Sum_probs=156.4
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH
Q 004426 456 GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAI 535 (754)
Q Consensus 456 ~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl 535 (754)
..|+.+...|++.+|+..|.+++...++.+.++..++.. ........+ ++.++|.+|..+|++++|+
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~----------al~~l~~~y~~~~~~~~a~ 75 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVD---DKRRNEQET----------SILELGQLYVTMGAKDKLR 75 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBC---SHHHHHHHH----------HHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHH---HHHhhhHHH----------HHHHHHHHHHHCCCHHHHH
Confidence 345566777788888888888877777655554444322 333333333 4578999999999999999
Q ss_pred HHHHHHHHcCCC-HH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchh
Q 004426 536 SEIDRIIVFKLS-VD------CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPAD 608 (754)
Q Consensus 536 ~~~~rAl~l~p~-~~------~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~ 608 (754)
+.|.+++.+.+. .. .....+.++...|++++|+..+++++...+....-.++..+...++.+....+++++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A- 154 (434)
T 4b4t_Q 76 EFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS- 154 (434)
T ss_dssp HHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH-
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH-
Confidence 999999988653 11 1234567778889999999999999988765433333444444455454444454444
Q ss_pred hhhhhhhccccccccchHHHHHHHHHc------CCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------hh
Q 004426 609 CWIKLYDRWSSVDDIGSLAVINQMLIN------DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE-------HE 675 (754)
Q Consensus 609 ~~~~l~~~~~~~~d~~al~~~~~aL~l------~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-------~e 675 (754)
+..+.+++.. .|..++++.++|.++..+|++++|...+++|+...+.. +.
T Consensus 155 -----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 155 -----------------LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp -----------------HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred -----------------HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6667777665 45667899999999999999999999999999876443 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 676 RLVYEGWILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 676 a~~~~G~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
.+.+.|.++...|++++|...|.+++..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5677788888899999999999999874
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.03 E-value=3.8e-10 Score=99.28 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=67.8
Q ss_pred cCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 004426 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 707 (754)
Q Consensus 635 l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~ 707 (754)
.+|+++.+++++|.++..+|++++|+..|++|++++|+++.+++++|.+++.+|++++|+..|++|+++.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999986654
No 212
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.02 E-value=2.5e-09 Score=98.52 Aligned_cols=140 Identities=11% Similarity=-0.015 Sum_probs=111.2
Q ss_pred HHHHHHhhhhhhHhhccchHHHHHHHHHHhhhcch--------hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHH
Q 004426 417 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--------YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMY 488 (754)
Q Consensus 417 qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~~~~--------~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay 488 (754)
..+.++..+|.++...|++++|+..|++++++.+. .++..+|.++..+|++++|...+.+++...+..+.
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-- 84 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-- 84 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--
Confidence 34567889999999999999999999999988321 35677888888888888888877777665432110
Q ss_pred HHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---C----HHHHHHHHHHHHHc
Q 004426 489 QERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL---S----VDCLELRAWLFIAA 561 (754)
Q Consensus 489 ~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p---~----~~~~~~ra~~~~~l 561 (754)
.+..+.++.++|.++..+|++++|+..+++++.+.+ + ...+...+.++..+
T Consensus 85 ----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 142 (164)
T 3ro3_A 85 ----------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 142 (164)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc
Confidence 011256789999999999999999999999998843 2 34567788999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 004426 562 DDYESALRDTLALLALESN 580 (754)
Q Consensus 562 gd~~~Al~d~~~al~l~P~ 580 (754)
|++++|+..+++++++...
T Consensus 143 g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 143 GNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp TCHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 213
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.7e-10 Score=101.17 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=37.8
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (754)
Q Consensus 640 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~ 706 (754)
+..++++|.++..+|++++|+..|++|++++|+++.+++++|.+++.+|++++|+..|++|++++|+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 3445555555555555555555555555555555555555555555555555555555555555555
No 214
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.01 E-value=6.9e-10 Score=105.13 Aligned_cols=99 Identities=14% Similarity=0.106 Sum_probs=86.0
Q ss_pred EEEEE-CCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCC----------------
Q 004426 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR---------------- 282 (754)
Q Consensus 220 V~f~V-~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~---------------- 282 (754)
|+++. +|+.|.+||.+ |..|.+|+.||.+.- .+.|.| ++|+..+++.|++|+|+..
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl--~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 76 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPL--PNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 76 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEEC--TTCCHHHHHHHHHHHHHHTTCC-------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceec--CCcCHHHHHHHHHHHHHhccCCCccccccccccch
Confidence 77776 78999999998 899999999997631 457999 9999999999999999876
Q ss_pred ----------CCCCChhHHHHHHHHhchhChhhHHHHHHHHHHhhcCCHhhHHHH
Q 004426 283 ----------VDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALIL 327 (754)
Q Consensus 283 ----------l~~i~~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~~~n~l~i 327 (754)
+. ++.+++++|+.+||++++.+|.+.|+++++..+. -.+.-.|
T Consensus 77 ~~i~~wD~~F~~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ik-gkt~eei 129 (141)
T 1fs1_B 77 DDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIK-GKTPEEI 129 (141)
T ss_dssp ----HHHHHHTC-SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-TCCHHHH
T ss_pred hhhhHHHHHHHh-CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-CCCHHHH
Confidence 55 7889999999999999999999999999999997 3554443
No 215
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.00 E-value=1.3e-09 Score=119.49 Aligned_cols=173 Identities=9% Similarity=-0.063 Sum_probs=137.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV------------------DCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 515 ~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~------------------~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
+.+....|..+...|++++|+..|.+++...|+. .++..+|.+|..+|++++|+..|+++++
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4456678888999999999999999999998752 2367789999999999999999999999
Q ss_pred cCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcC------CCChhHHHhHHHHH
Q 004426 577 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND------PGKSFLRFRQSLLL 650 (754)
Q Consensus 577 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~------P~~~~~~~~~g~~L 650 (754)
+.+..........+....+.+......+++| +..+.+++... +..+.++.++|.++
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a------------------~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 145 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQ------------------IFVCEKSIEFAKREKRVFLKHSLSIKLATLH 145 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHH------------------HHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHH------------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 9887643333333444445444444444444 56666666653 44467899999999
Q ss_pred HHcCCHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 651 LRLNCQKAAMRCLRLARNH------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 705 (754)
Q Consensus 651 ~~lg~~eeAl~~~~~Al~l------~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~ 705 (754)
..+|++++|+..+++++.. .|..++++.++|.++..+|++++|...|++|+.+.+
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 9999999999999999976 556688999999999999999999999999998753
No 216
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.99 E-value=1.8e-09 Score=94.62 Aligned_cols=94 Identities=7% Similarity=0.009 Sum_probs=87.0
Q ss_pred chhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCc------hhHHH
Q 004426 606 PADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE------HERLV 678 (754)
Q Consensus 606 ~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~ 678 (754)
.++.|..++..+...+++. |+..++++++++|.++.+++++|.++..+|++++|+..+++|++++|++ +.+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4667888888888888888 9999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 004426 679 YEGWILYDTGHREEALSRAEK 699 (754)
Q Consensus 679 ~~G~~ly~~G~~eeAl~~~e~ 699 (754)
.+|.++..+|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999999988877664
No 217
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.99 E-value=1.6e-10 Score=111.98 Aligned_cols=111 Identities=12% Similarity=0.096 Sum_probs=65.1
Q ss_pred EEEEE-CCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCC----------------
Q 004426 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR---------------- 282 (754)
Q Consensus 220 V~f~V-~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~---------------- 282 (754)
|+++. +|+.|.+||.+ |..|++|+.||.++. ....|.| ++|+..+|+.|++|+|+..
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl--~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 79 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPL--PNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATS 79 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------CC--TTSCHHHHHHHHHC---------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeC--CcCcHHHHHHHHHHHHHcccCCCcccccccccccc
Confidence 77775 79999999998 899999999998753 2347889 9999999999999999976
Q ss_pred -----------CCCCChhHHHHHHHHhchhChhhHHHHHHHHHHhhcCC--HhhHHHHHHHhhhhchH
Q 004426 283 -----------VDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGD--IEDALILIDYGLEERAT 337 (754)
Q Consensus 283 -----------l~~i~~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~--~~n~l~il~~A~~~~~~ 337 (754)
+. ++.+++++|+.+||++++..|.+.|+++++..|.+ ++++..++.+...+...
T Consensus 80 ~~~i~~wD~~Fl~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~e 146 (160)
T 2p1m_A 80 DDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPE 146 (160)
T ss_dssp ----------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHH
T ss_pred cchhhHHHHHHHc-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHH
Confidence 23 67889999999999999999999999999999931 77887777776655543
No 218
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.97 E-value=2.2e-09 Score=90.61 Aligned_cols=82 Identities=12% Similarity=0.061 Sum_probs=76.6
Q ss_pred CCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHH
Q 004426 637 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAY 715 (754)
Q Consensus 637 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~~~~~ 715 (754)
|.++.+++++|.++..+|++++|+..+++|++++|+++.+++++|.+++.+|++++|+..|+++++++|+.. +++..|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999999999999999999999999999877 8888887
Q ss_pred Hhh
Q 004426 716 ILA 718 (754)
Q Consensus 716 ~~~ 718 (754)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 219
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.96 E-value=1.3e-09 Score=95.69 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=66.7
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 510 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 510 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
.+|+++.+|+++|.++..+|++++|+..|+++++++|+ +..++.+|.++..+|++++|+..|+++++++|+.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 48999999999999999999999999999999999996 7889999999999999999999999999999865
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.83 E-value=4.9e-09 Score=90.67 Aligned_cols=57 Identities=9% Similarity=-0.059 Sum_probs=29.1
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 642 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (754)
Q Consensus 642 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~ 706 (754)
+++++|.++..+|++++|+..|++|++++|++.+++.+ +.+++++..|++++.++|+
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcc
Confidence 44555555555555555555555555555555554433 4445555555555554443
No 221
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.82 E-value=3.2e-08 Score=83.30 Aligned_cols=48 Identities=10% Similarity=-0.022 Sum_probs=35.4
Q ss_pred hHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcC
Q 004426 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG 688 (754)
Q Consensus 641 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G 688 (754)
.+++++|.++..+|++++|+..++++++++|+++.++.++|.++..+|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 456667777777777777777777777777777777777777776654
No 222
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=2.9e-09 Score=95.64 Aligned_cols=93 Identities=11% Similarity=0.020 Sum_probs=76.0
Q ss_pred HhhcCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhhhcCchhhhhhccCchhhHHHHh-cccchhHHHHHHHHHHhh
Q 004426 315 ASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEATERLAN-VGHASFLLYYFLSQVAME 393 (754)
Q Consensus 315 ~~~i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~vl~~e~f~~Ll~~~~~~~~l~~-v~~~~~~~~a~LswV~~d 393 (754)
.+.++ ++||+.++.+|..|+++.|.+.|.+||.+||.++.++++|.+|-. ....+.+.. +..+..+|.+++.|+.++
T Consensus 5 ~~~L~-~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~-~~L~~lL~sdv~~E~~vf~av~~Wv~~d 82 (105)
T 2eqx_A 5 SSGVQ-VGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPH-RLLTDIISDGVPCSQNPTEAIEAWINFN 82 (105)
T ss_dssp CCCCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCH-HHHHHHHHTCEETTSCHHHHHHHHHHTT
T ss_pred hccCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCH-HHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 35678 899999999999999999999999999999999999999998621 111111111 567778999999999999
Q ss_pred hhcchhhHHHHHHHhh
Q 004426 394 KDRVSNTTVMLLERLG 409 (754)
Q Consensus 394 ~~~r~~~~v~LLer~v 409 (754)
...|..+...+++..+
T Consensus 83 ~~~R~~~~~~Ll~~VR 98 (105)
T 2eqx_A 83 KEEREAFAESLRTSLK 98 (105)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888888888888744
No 223
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.76 E-value=1.1e-07 Score=101.42 Aligned_cols=199 Identities=12% Similarity=-0.012 Sum_probs=128.2
Q ss_pred HHHHHHHHhhhc--chhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhhCC--C
Q 004426 438 ACYYFEAAADAG--HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDP--T 513 (754)
Q Consensus 438 A~~~f~~AL~~~--~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~LdP--~ 513 (754)
|+..|++.++.+ ...+...+|.++...|++++|+. .+.+++..+| +
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~------------------------------~l~~~i~~~~~~~ 134 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLE------------------------------TCVEGIDNDEAEG 134 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHH------------------------------HHHHHHTSSCSTT
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH------------------------------HHHHHhccCCCcC
Confidence 667777766652 23345567777777787755554 4555555554 6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----HHHH--HHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcccc
Q 004426 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-----VDCL--ELRAWLFIAAD--DYESALRDTLALLALESNYMMF 584 (754)
Q Consensus 514 ~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-----~~~~--~~ra~~~~~lg--d~~~Al~d~~~al~l~P~~~~~ 584 (754)
+.+++.-.+.++..+||.+.|...++++.+.+|+ -... ..-+|+.+..| ++++|...|+.+.+..|++.
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~-- 212 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK-- 212 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH--
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc--
Confidence 6667777777777777777777777777777771 1212 22345555555 77777777777777666520
Q ss_pred ccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHc----------CCCChhHHHhHHHHHHHcC
Q 004426 585 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN----------DPGKSFLRFRQSLLLLRLN 654 (754)
Q Consensus 585 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l----------~P~~~~~~~~~g~~L~~lg 654 (754)
....+.. .....+++++| ...+++.++. +|++++++.|+..+-..+|
T Consensus 213 ----~~~lLln-~~~~~g~~~eA------------------e~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg 269 (310)
T 3mv2_B 213 ----TQLGLLN-LHLQQRNIAEA------------------QGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG 269 (310)
T ss_dssp ----HHHHHHH-HHHHHTCHHHH------------------HHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT
T ss_pred ----cHHHHHH-HHHHcCCHHHH------------------HHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC
Confidence 0111111 33344444444 4455555554 5999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q 004426 655 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRA 697 (754)
Q Consensus 655 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~ 697 (754)
+ +|.+.++++...+|+++....+.. ....||++..+|
T Consensus 270 k--~a~~l~~qL~~~~P~hp~i~d~~~----k~~~Fd~~~~ky 306 (310)
T 3mv2_B 270 L--DTEDLTNQLVKLDHEHAFIKHHQE----IDAKFDELVRKY 306 (310)
T ss_dssp C--TTHHHHHHHHHTTCCCHHHHHHHH----HHHHHHHHHHTC
T ss_pred h--HHHHHHHHHHHhCCCChHHHHHHH----HHHHHHHHHHHh
Confidence 8 799999999999999998776543 234455555544
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.76 E-value=1.6e-07 Score=98.49 Aligned_cols=82 Identities=7% Similarity=0.008 Sum_probs=76.6
Q ss_pred hHHHHHHHHHcCCC--ChhHHHhHHHHHHHc-----CCHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHc-CCHHHHHH
Q 004426 625 SLAVINQMLINDPG--KSFLRFRQSLLLLRL-----NCQKAAMRCLRLARNHSSSE-HERLVYEGWILYDT-GHREEALS 695 (754)
Q Consensus 625 al~~~~~aL~l~P~--~~~~~~~~g~~L~~l-----g~~eeAl~~~~~Al~l~P~~-~ea~~~~G~~ly~~-G~~eeAl~ 695 (754)
+...++|||++||+ ++.+|..+|.++.++ |+++.|.+.|++|++++|+. .+.++..|..+... |++++|.+
T Consensus 182 A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~ 261 (301)
T 3u64_A 182 AVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDE 261 (301)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHH
Confidence 45589999999999 778999999999997 99999999999999999975 99999999999885 99999999
Q ss_pred HHHHHHhcCCC
Q 004426 696 RAEKSISIERT 706 (754)
Q Consensus 696 ~~e~Ai~l~~~ 706 (754)
.+++|+++.|.
T Consensus 262 ~L~kAL~a~p~ 272 (301)
T 3u64_A 262 ALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCGG
T ss_pred HHHHHHcCCCC
Confidence 99999998776
No 225
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.76 E-value=2.2e-08 Score=86.53 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=65.0
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HH
Q 004426 643 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE-RLVYEGWILYDTGHREEALSRAEKSISIERTFE-AF 710 (754)
Q Consensus 643 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e-a~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~ 710 (754)
.+++|.++...|++++|+..|+++++.+|+++. +++++|.+++.+|++++|+..|+++++++|++. ++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 467899999999999999999999999999999 999999999999999999999999999999987 55
No 226
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.67 E-value=4.8e-07 Score=106.73 Aligned_cols=227 Identities=10% Similarity=-0.048 Sum_probs=170.3
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 501 IVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAI-SEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALE 578 (754)
Q Consensus 501 l~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl-~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~ 578 (754)
...|++|+...|.++..|+..|..+...|+.++|. ..|.+|+...|. ...+...+.+....|+++.|...|++++..-
T Consensus 329 ~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 329 TYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999998 999999999996 5556667788999999999999999999863
Q ss_pred -----------CCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHc-CCCChhHHHh
Q 004426 579 -----------SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLIN-DPGKSFLRFR 645 (754)
Q Consensus 579 -----------P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l-~P~~~~~~~~ 645 (754)
|.+. .. +... ..+.+..|+.......+.+..+ |..++.+|+.. .+.....|..
T Consensus 409 ~~~~~~~~~~~p~~~-----~~-------~~~~--~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~ 474 (679)
T 4e6h_A 409 HLDLAALMEDDPTNE-----SA-------INQL--KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLE 474 (679)
T ss_dssp HHHHHHHHHHSTTCH-----HH-------HHHH--HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHH
T ss_pred HHHhhhhhhccCcch-----hh-------hhhh--ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 3210 00 0000 0011223444444333334444 67799999988 5556778887
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---hHHHHHHHHHhhccC
Q 004426 646 QSLLLLRLNC-QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT---FEAFFLKAYILADTN 721 (754)
Q Consensus 646 ~g~~L~~lg~-~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~---~~a~~~~~~~~~~~~ 721 (754)
.|.+..+.|. .+.|...|+++++..|+++......+..+...|+.+.|-+.|++|+...|+ ....+.+-+.++-..
T Consensus 475 ~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~ 554 (679)
T 4e6h_A 475 NAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV 554 (679)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 7777777765 899999999999999999988777788888889999999999999998884 557777777777777
Q ss_pred CCCCchhHHHHHHHHHhcCCCC
Q 004426 722 LDPESSTYVIQLLEEALRCPSD 743 (754)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~ 743 (754)
=|.++...|.+-+-+ .||.+
T Consensus 555 G~~~~~~~v~~R~~~--~~P~~ 574 (679)
T 4e6h_A 555 GSLNSVRTLEKRFFE--KFPEV 574 (679)
T ss_dssp CCSHHHHHHHHHHHH--HSTTC
T ss_pred CCHHHHHHHHHHHHH--hCCCC
Confidence 676665555554433 36765
No 227
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.65 E-value=6.1e-07 Score=97.48 Aligned_cols=143 Identities=13% Similarity=0.056 Sum_probs=101.5
Q ss_pred HHHHhhhhhhHhhc---cchHHHHHHHHHHhhhcchh--hhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhh
Q 004426 419 MLALHQLGCVMFER---EEYKDACYYFEAAADAGHIY--SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL 493 (754)
Q Consensus 419 a~Al~~LG~v~~~~---g~~~eA~~~f~~AL~~~~~~--a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~ 493 (754)
+..++.+|..++.. ..+.+|+.+|++|++++|.+ ++.+++.++..... ..+..+......
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~-------------~~~~~~~~~~~l-- 260 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHS-------------QHPLDEKQLAAL-- 260 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-------------HSCCCHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhc-------------cCCCchhhHHHH--
Confidence 34455566665544 34577888888888886654 44444444431100 000000000000
Q ss_pred cCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004426 494 YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLA 573 (754)
Q Consensus 494 y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~ 573 (754)
..+... ..++.++|.++.+|.-+|.++...|++++|+..++||++++|+...+..+|.++...|++++|+..|++
T Consensus 261 ----~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 261 ----NTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp ----HHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----HHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 222221 246688999999999999999999999999999999999999987788899999999999999999999
Q ss_pred HHhcCCCc
Q 004426 574 LLALESNY 581 (754)
Q Consensus 574 al~l~P~~ 581 (754)
|+.++|..
T Consensus 336 AlrL~P~~ 343 (372)
T 3ly7_A 336 AFNLRPGA 343 (372)
T ss_dssp HHHHSCSH
T ss_pred HHhcCCCc
Confidence 99999986
No 228
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.61 E-value=1.9e-06 Score=101.66 Aligned_cols=226 Identities=8% Similarity=-0.087 Sum_probs=161.3
Q ss_pred HHHHHHHHHccCCCHHHHHHhhhcC----ChhhHH-HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 004426 471 YKLINSIISEHKPTGWMYQERSLYN----LGREKI-VDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF- 544 (754)
Q Consensus 471 ~~~~~~aI~~~~~~g~ay~~r~~y~----~g~eAl-~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l- 544 (754)
...|++++...|....++..-+.+. ...+|. ..|++|+...|.....|...+......|++++|...|++++..
T Consensus 329 ~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 329 TYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3445566666666555554444321 225776 8899999999999999999999999999999999999999975
Q ss_pred ----------CCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhc
Q 004426 545 ----------KLS------------VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR 602 (754)
Q Consensus 545 ----------~p~------------~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~ 602 (754)
.|. ...|...+.+....|+.+.|.+.|.+|++..|... .........++...
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----~~lyi~~A~lE~~~- 482 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----PDIYLENAYIEYHI- 482 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----THHHHHHHHHHHTT-
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHh-
Confidence 242 12344455566778999999999999998833210 11111111111111
Q ss_pred cccchhhhhhhhhccccccccc-hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC---chhHHH
Q 004426 603 SWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS---EHERLV 678 (754)
Q Consensus 603 ~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~ 678 (754)
.++.+ |..+|+++|...|.++.+|...+..+...|+.+.|...|++|+...|+ ....+.
T Consensus 483 -----------------~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~ 545 (679)
T 4e6h_A 483 -----------------SKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQ 545 (679)
T ss_dssp -----------------TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHH
T ss_pred -----------------CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 12233 578999999999999999999999999999999999999999999984 233333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCChH--HHHHHHHHhhc
Q 004426 679 YEGWILYDTGHREEALSRAEKSISIERTFE--AFFLKAYILAD 719 (754)
Q Consensus 679 ~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~--a~~~~~~~~~~ 719 (754)
.....-...|+.+.+...++|+....|+.. ..|..=|.+.+
T Consensus 546 ~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~~~~ 588 (679)
T 4e6h_A 546 KVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYKVLD 588 (679)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTCBTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCc
Confidence 333333456999999999999999999855 55555555443
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.57 E-value=2e-07 Score=81.63 Aligned_cols=71 Identities=10% Similarity=-0.079 Sum_probs=68.3
Q ss_pred CCCChhHHHhHHHHHHHcCC---HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004426 636 DPGKSFLRFRQSLLLLRLNC---QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 706 (754)
Q Consensus 636 ~P~~~~~~~~~g~~L~~lg~---~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~ 706 (754)
+|.++++++.+|.+|...+. .++|...+++|++++|+++.+++.+|.+++..|+|++|+..|+++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 79999999999999988777 689999999999999999999999999999999999999999999999987
No 230
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.52 E-value=7.5e-07 Score=83.15 Aligned_cols=117 Identities=9% Similarity=0.013 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChh
Q 004426 562 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF 641 (754)
Q Consensus 562 gd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~ 641 (754)
+|+++|+..|+++.+..+... . ++.+.......++ |+..|+++.+. +++.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a--------~--lg~~y~~g~~~~~------------------A~~~~~~Aa~~--g~~~ 58 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFG--------C--LSLVSNSQINKQK------------------LFQYLSKACEL--NSGN 58 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH--------H--HHHHTCTTSCHHH------------------HHHHHHHHHHT--TCHH
T ss_pred cCHHHHHHHHHHHHcCCCHhh--------h--HHHHHHcCCCHHH------------------HHHHHHHHHcC--CCHH
Confidence 467888888888888775431 1 2222111111111 57788888887 7899
Q ss_pred HHHhHHHHHHH----cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChHHH
Q 004426 642 LRFRQSLLLLR----LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD----TGHREEALSRAEKSISIERTFEAF 710 (754)
Q Consensus 642 ~~~~~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~----~G~~eeAl~~~e~Ai~l~~~~~a~ 710 (754)
+++++|.++.. .+++++|+..|++|.+. .++++++++|.++.. .+++++|+..|++|.+.......+
T Consensus 59 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~ 133 (138)
T 1klx_A 59 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACG 133 (138)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999 89999999999999988 689999999999999 999999999999999986544443
No 231
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.46 E-value=4.8e-07 Score=80.23 Aligned_cols=79 Identities=27% Similarity=0.337 Sum_probs=69.4
Q ss_pred EEEEE-CCeEEehhhHHHhhcCHHHHHhhcCCCCCCCcceEEecCCCCCHHHHHHHHHHhhcCC--------------CC
Q 004426 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR--------------VD 284 (754)
Q Consensus 220 V~f~V-~g~~f~aHR~iLaa~S~yF~aMf~~~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~--------------l~ 284 (754)
|+++- +|+.|.++|.+ |..|.+++.||.+++ |+....|.| ++|+..+++.|++|+|.-. ..
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Ipl--p~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~ 81 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIEL--KQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFE 81 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEE--TTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCC
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceec--CCcCHHHHHHHHHHHHHhcccCCCccccccCCCcc
Confidence 88877 89999999997 899999999999877 666678999 9999999999999999743 22
Q ss_pred CCChhHHHHHHHHhchhCh
Q 004426 285 LFCPGIVLELLSFANRFCC 303 (754)
Q Consensus 285 ~i~~~~vlelL~aA~~f~l 303 (754)
++.+.+++|+.|||++++
T Consensus 82 -vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 82 -IPTEMSLELLLAADYLSI 99 (99)
T ss_dssp -CCHHHHHHHHHHHHHHCC
T ss_pred -CCHHHHHHHHHHHHHhCc
Confidence 788999999999999875
No 232
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.46 E-value=5.4e-07 Score=102.35 Aligned_cols=132 Identities=9% Similarity=-0.054 Sum_probs=105.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-----CC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhh
Q 004426 520 YRAVAKMEEGQIRAAISEIDRIIVFK-----LS-V---DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG 590 (754)
Q Consensus 520 ~rg~~l~~lg~~~eAl~~~~rAl~l~-----p~-~---~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~ 590 (754)
..+..+..+|+|++|+..+.++|++. |+ + ..+.++|.+|..+|+|++|+..|++++++.-.. +|
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~---lG---- 386 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL---YH---- 386 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---SC----
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH---cC----
Confidence 34456778999999999999999872 32 3 456778999999999999999999999863211 00
Q ss_pred hHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhc-
Q 004426 591 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH- 669 (754)
Q Consensus 591 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l- 669 (754)
...|.-+..++|+|.++..+|++++|+..|++|+++
T Consensus 387 -------------------------------------------~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 387 -------------------------------------------HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp -------------------------------------------TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 012444567899999999999999999999999974
Q ss_pred ----CCCc---hhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 670 ----SSSE---HERLVYEGWILYDTGHREEALSRAEKSI 701 (754)
Q Consensus 670 ----~P~~---~ea~~~~G~~ly~~G~~eeAl~~~e~Ai 701 (754)
-|++ ++.+.+++.++..+|.+++|...|.+|.
T Consensus 424 ~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 424 LVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 5666799999999999999999999985
No 233
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.45 E-value=5.1e-07 Score=86.06 Aligned_cols=90 Identities=13% Similarity=0.037 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCCCChhHHHhHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 626 LAVINQMLINDPGKSFLRFRQSLLLLRLN---CQKAAMRCLRLARNHS-S-SEHERLVYEGWILYDTGHREEALSRAEKS 700 (754)
Q Consensus 626 l~~~~~aL~l~P~~~~~~~~~g~~L~~lg---~~eeAl~~~~~Al~l~-P-~~~ea~~~~G~~ly~~G~~eeAl~~~e~A 700 (754)
-..|+..+..+|.+.++.|+.|.+|.+.+ ..++|+..++..++.+ | ++.+.+|++|..+|++|+|++|....+++
T Consensus 18 ~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l 97 (152)
T 1pc2_A 18 EKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 97 (152)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34688889999999999999999999999 5669999999999999 8 67999999999999999999999999999
Q ss_pred HhcCCChH-HHHHHHH
Q 004426 701 ISIERTFE-AFFLKAY 715 (754)
Q Consensus 701 i~l~~~~~-a~~~~~~ 715 (754)
++++|++. |-.||-.
T Consensus 98 L~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 98 LQTEPQNNQAKELERL 113 (152)
T ss_dssp HHHCTTCHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHH
Confidence 99999987 7777654
No 234
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.43 E-value=2.8e-06 Score=79.17 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=91.3
Q ss_pred cchHHHHHHHHHHhhhcchhhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhhCC
Q 004426 433 EEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDP 512 (754)
Q Consensus 433 g~~~eA~~~f~~AL~~~~~~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~LdP 512 (754)
+++++|+.+|++|.+.++..+. +|.++...++. .+|+..|.+|.+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~------------------------------~~A~~~~~~Aa~~-- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINK------------------------------QKLFQYLSKACEL-- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCH------------------------------HHHHHHHHHHHHT--
T ss_pred cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCH------------------------------HHHHHHHHHHHcC--
Confidence 5678888888888888766665 66555544443 3366667777765
Q ss_pred CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC
Q 004426 513 TLSFPYKYRAVAKME----EGQIRAAISEIDRIIVFKLSVDCLELRAWLFIA----ADDYESALRDTLALLALESN 580 (754)
Q Consensus 513 ~~~~ay~~rg~~l~~----lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~----lgd~~~Al~d~~~al~l~P~ 580 (754)
.++.+++++|.+|.. .+++++|+..|++|.+. -++.+.++.|.+|.. .+|+++|+..|++|.+....
T Consensus 55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 688999999999999 89999999999999975 457888999999999 99999999999999998653
No 235
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.37 E-value=1.5e-06 Score=78.13 Aligned_cols=95 Identities=9% Similarity=0.004 Sum_probs=77.7
Q ss_pred Cc-EEEEECCeEEehhhHHHhhcC-HHHHHhhcCCCC----CCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChh-H
Q 004426 218 DS-VTFCVRDKEISFVRNKIASLS-SPFKAMLYGGFV----ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG-I 290 (754)
Q Consensus 218 ~~-V~f~V~g~~f~aHR~iLaa~S-~yF~aMf~~~~~----Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~-~ 290 (754)
+. |+|.|||+.|...+..|.... .+|..||.+... ....+++-| |-+|..|+.||+|+.||++. ++.+ .
T Consensus 5 ~~~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi---DRdp~~F~~IL~~lr~g~l~-~p~~~~ 80 (107)
T 3drz_A 5 SKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI---DRDPTYFGPVLNYLRHGKLV-INKDLA 80 (107)
T ss_dssp CCEEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE---CSCHHHHHHHHHHHHHSCCC-CCTTSC
T ss_pred CCEEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe---cCChHHHHHHHHHhCCCeeC-CCCCCC
Confidence 44 999999999999999998765 478999986521 123356777 78999999999999999997 4433 3
Q ss_pred HHHHHHHhchhChhhHHHHHHHHHHh
Q 004426 291 VLELLSFANRFCCEEMKSACDAHLAS 316 (754)
Q Consensus 291 vlelL~aA~~f~l~~Lk~~Ce~~L~~ 316 (754)
...++.-|.+|+++.|++.|++.+.+
T Consensus 81 ~~~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 81 EEGVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 57899999999999999999988764
No 236
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.35 E-value=1.9e-06 Score=76.34 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=69.5
Q ss_pred ChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcC-------CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HH
Q 004426 639 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS-------SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AF 710 (754)
Q Consensus 639 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-------P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~ 710 (754)
++.-++.+|..+...|+++.|+.+|+.|++.. +..++.+.++|.+++.+|++++|+..+++|+.++|+.. +.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 46678999999999999999999999999974 46789999999999999999999999999999999998 66
Q ss_pred HHHHH
Q 004426 711 FLKAY 715 (754)
Q Consensus 711 ~~~~~ 715 (754)
+++++
T Consensus 84 ~n~~~ 88 (104)
T 2v5f_A 84 GNLKY 88 (104)
T ss_dssp HHHHH
T ss_pred hhHHH
Confidence 66664
No 237
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.34 E-value=1.7e-06 Score=98.24 Aligned_cols=127 Identities=7% Similarity=-0.035 Sum_probs=100.6
Q ss_pred HhhccchHHHHHHHHHHhhh-------cch---hhhhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChh
Q 004426 429 MFEREEYKDACYYFEAAADA-------GHI---YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR 498 (754)
Q Consensus 429 ~~~~g~~~eA~~~f~~AL~~-------~~~---~a~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~ 498 (754)
+..+|+|++|+..|++++++ +|. .++.++|.++..+|++++|...+.++++.+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~---------------- 382 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM---------------- 382 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----------------
Confidence 44678999999999999987 222 3577899999999999999998888877641
Q ss_pred hHHHHHHHHH-hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC-HHH---HHHHHHHHHHcCCHHHHH
Q 004426 499 EKIVDLNYAS-ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF-----KLS-VDC---LELRAWLFIAADDYESAL 568 (754)
Q Consensus 499 eAl~dl~kAi-~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l-----~p~-~~~---~~~ra~~~~~lgd~~~Al 568 (754)
+++ .-.|+-+..|+|+|.+|..+|++++|+..|.+|+++ -|+ |.. ..+++.++.++|+|++|.
T Consensus 383 -------~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 383 -------KLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp -------HHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 112445678899999999999999999999999987 343 433 456778999999999999
Q ss_pred HHHHHHHhcC
Q 004426 569 RDTLALLALE 578 (754)
Q Consensus 569 ~d~~~al~l~ 578 (754)
..|+++.+-.
T Consensus 456 ~~~~~~~~~~ 465 (490)
T 3n71_A 456 FMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987644
No 238
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.31 E-value=2.7e-06 Score=82.84 Aligned_cols=110 Identities=14% Similarity=0.065 Sum_probs=83.9
Q ss_pred EEEEE-CCeEEehhhHHHhhcCHHHHHhhcCCCC----CCCcceEEecCCCCCHHHHHHHHHHhhcCCCC----------
Q 004426 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFV----ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVD---------- 284 (754)
Q Consensus 220 V~f~V-~g~~f~aHR~iLaa~S~yF~aMf~~~~~----Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~---------- 284 (754)
|+++- +|+.|.+++.+ |..|..++.|+.+... +.....|.| ++|+..+++.|++|++.-.-.
T Consensus 9 i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~Ipl--pnV~s~iL~kVieyc~~h~~~~~~~~~~~~~ 85 (169)
T 3v7d_A 9 VVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPV--PNVRSSVLQKVIEWAEHHRDSNFPDEDDDDS 85 (169)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEEC--TTCCHHHHHHHHHHHHHTTTCCCCC------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceee--CCCCHHHHHHHHHHHHHcccCCCcccccccc
Confidence 77765 78999999998 7889999999975332 233468999 999999999999999864311
Q ss_pred --------------CCChhHHHHHHHHhchhChhhHHHHHHHHHHhhcCC--HhhHHHHHHHhh
Q 004426 285 --------------LFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGD--IEDALILIDYGL 332 (754)
Q Consensus 285 --------------~i~~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~--~~n~l~il~~A~ 332 (754)
.++.+.+++|+.+||++++.+|...|++.++..+.+ ++..-.++.+-.
T Consensus 86 ~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~n 149 (169)
T 3v7d_A 86 RKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVN 149 (169)
T ss_dssp --CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCC
T ss_pred cccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCC
Confidence 166788999999999999999999999999887753 444444444433
No 239
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.30 E-value=7.3e-07 Score=78.57 Aligned_cols=80 Identities=31% Similarity=0.416 Sum_probs=63.8
Q ss_pred EEEEE-CCeEEehhhHHHhhcCHHHHHhhcC--CCCCCCcceEEecCCCCCHHHHHHHHHHhhcCC-----------CCC
Q 004426 220 VTFCV-RDKEISFVRNKIASLSSPFKAMLYG--GFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR-----------VDL 285 (754)
Q Consensus 220 V~f~V-~g~~f~aHR~iLaa~S~yF~aMf~~--~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~-----------l~~ 285 (754)
|+++- +|+.|.++|.+ |..|.+++.||.+ .+.|+....|.| ++|+..+++.|++|+|.-. ..
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl--~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~- 78 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNF--REIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP- 78 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEEC--SSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCC-
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeC--CCCCHHHHHHHHHHHHHccccCCCcccCCCcc-
Confidence 56665 89999999997 8999999999985 346777779999 9999999999999998643 23
Q ss_pred CChhHHHHHHHHhchhCh
Q 004426 286 FCPGIVLELLSFANRFCC 303 (754)
Q Consensus 286 i~~~~vlelL~aA~~f~l 303 (754)
++.+.+++|+.+||++++
T Consensus 79 vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 79 IAPEIALELLMAANFLDC 96 (96)
T ss_dssp CCTTTHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCc
Confidence 778999999999999874
No 240
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.28 E-value=3e-06 Score=74.00 Aligned_cols=71 Identities=10% Similarity=0.018 Sum_probs=65.2
Q ss_pred CCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004426 511 DPTLSFPYKYRAVAKMEEGQ---IRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNY 581 (754)
Q Consensus 511 dP~~~~ay~~rg~~l~~lg~---~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~ 581 (754)
+|+++..+..+|.+++..++ .++|...+++||+++|+ +.++...|..+.+.|+|++|+..++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 69999999999999987666 79999999999999996 8889999999999999999999999999999983
No 241
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.20 E-value=6.9e-06 Score=78.24 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-C-C-HHHHHHHHHHHHHcCCHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEG---QIRAAISEIDRIIVFK-L-S-VDCLELRAWLFIAADDYESALRDT 571 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg---~~~eAl~~~~rAl~l~-p-~-~~~~~~ra~~~~~lgd~~~Al~d~ 571 (754)
..+...|.+++..+|...++.++.|.++...+ ++++|+..+..+++.+ | + .+++|++|..+.++|+|++|++.+
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 44556788899999999999999999999988 6779999999999998 7 3 799999999999999999999999
Q ss_pred HHHHhcCCCccccccchhhhHHHHHHhhhhc
Q 004426 572 LALLALESNYMMFHGRVSGDHLVKLLNHHVR 602 (754)
Q Consensus 572 ~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~ 602 (754)
+++++++|++ ..+..++..+....+
T Consensus 95 ~~lL~ieP~n------~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 95 RGLLQTEPQN------NQAKELERLIDKAMK 119 (152)
T ss_dssp HHHHHHCTTC------HHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCC------HHHHHHHHHHHHHHH
Confidence 9999999987 566666666655443
No 242
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.19 E-value=0.00071 Score=76.66 Aligned_cols=343 Identities=6% Similarity=-0.087 Sum_probs=191.6
Q ss_pred cccchhHHHHHHHHHHhhhhcchhhHHHHHHHhhh-ch-hhhHHHHHHHhhhhhhHhhccchHHHHHHHHHHhhh-c--c
Q 004426 376 VGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGE-CS-TERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA-G--H 450 (754)
Q Consensus 376 v~~~~~~~~a~LswV~~d~~~r~~~~v~LLer~vr-~~-~~~~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~-~--~ 450 (754)
+.+.-.++..++.+.-. ...+.+..++++++. +| .+-|.....+.... ....+.....|+.|+.. + +
T Consensus 11 i~~aR~vyer~l~~~P~---~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~-----~~~~~~i~~~fe~al~~vg~d~ 82 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS---KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKV-----SQKKFKLYEVYEFTLGQFENYW 82 (493)
T ss_dssp -CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH-----C----CTHHHHHHHHHHSTTCT
T ss_pred hHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHcCCCc
Confidence 45667788888877643 336678899999876 43 22233222222211 11224456678888875 2 1
Q ss_pred h--hhhhhHHHHHH----HhCCHHHHHHHHHHHHHccCCC--HHHHHHhhhc----C-------------ChhhHHHHHH
Q 004426 451 I--YSLAGLARAKY----KVGQQYSAYKLINSIISEHKPT--GWMYQERSLY----N-------------LGREKIVDLN 505 (754)
Q Consensus 451 ~--~a~~~larv~~----~~G~~~~A~~~~~~aI~~~~~~--g~ay~~r~~y----~-------------~g~eAl~dl~ 505 (754)
. ..|........ ..|+.+.+...|.++|.. |.. ...|..-..+ + ....|...|.
T Consensus 83 ~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~ 161 (493)
T 2uy1_A 83 DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQ 161 (493)
T ss_dssp TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHH
Confidence 1 22332222111 245667788899999984 421 1111100000 0 0012222333
Q ss_pred HHHhhCCC-ChHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 506 YASELDPT-LSFPYKYRAVAKMEEGQ---------IRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLAL 574 (754)
Q Consensus 506 kAi~LdP~-~~~ay~~rg~~l~~lg~---------~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~a 574 (754)
.+...-|. ....|.. .+-.+.++ .+.....|+++|...|. +..|..-+..+...|+.++|..-|++|
T Consensus 162 ~~~~~~~~~s~~~W~~--y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erA 239 (493)
T 2uy1_A 162 QIQPLIRGWSVKNAAR--LIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERG 239 (493)
T ss_dssp HHHHHHHTCSHHHHHH--HHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHH--HHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333222 2223333 22233332 34567889999998885 777877777888899999999999999
Q ss_pred HhcCCCccccccchhhh----HHHHHHhhhhcccc-----------chhhhhhhhhccccccccc-hHHHHHHHHHcCCC
Q 004426 575 LALESNYMMFHGRVSGD----HLVKLLNHHVRSWS-----------PADCWIKLYDRWSSVDDIG-SLAVINQMLINDPG 638 (754)
Q Consensus 575 l~l~P~~~~~~~~~~~~----~~~~~l~~~~~~~~-----------~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~ 638 (754)
+.. |+.......-+.. ...+.+.......+ ....|++......+.++.+ |-.+|.+| ..|+
T Consensus 240 i~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A--~~~~ 316 (493)
T 2uy1_A 240 IEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL--GNEG 316 (493)
T ss_dssp HHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--TTSC
T ss_pred HhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh--hCCC
Confidence 999 9875321111000 00011111110000 0122333322222223334 66689999 3443
Q ss_pred -ChhHHHhHHHHHHHcC-CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 004426 639 -KSFLRFRQSLLLLRLN-CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 716 (754)
Q Consensus 639 -~~~~~~~~g~~L~~lg-~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~ 716 (754)
....|...|.+....| .++.|...|+++++.-|++++.....+..+...|+.+.|-..|+++. ....++.+-..
T Consensus 317 ~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~ 392 (493)
T 2uy1_A 317 VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIE 392 (493)
T ss_dssp CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 5567777777777777 59999999999999999998876666777788899999999999983 34555655555
Q ss_pred hhccCCCCCchhHHHHHHHHHhc
Q 004426 717 LADTNLDPESSTYVIQLLEEALR 739 (754)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~ 739 (754)
++-+.=|. .++-.+++.+++
T Consensus 393 fE~~~G~~---~~~r~v~~~~~~ 412 (493)
T 2uy1_A 393 YEFMVGSM---ELFRELVDQKMD 412 (493)
T ss_dssp HHHHHSCH---HHHHHHHHHHHH
T ss_pred HHHHCCCH---HHHHHHHHHHHH
Confidence 66554343 344455666654
No 243
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.17 E-value=8.4e-05 Score=77.90 Aligned_cols=84 Identities=12% Similarity=0.052 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHhhCCC--ChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHH-cCCHHHH
Q 004426 498 REKIVDLNYASELDPT--LSFPYKYRAVAKMEE-----GQIRAAISEIDRIIVFKLS--VDCLELRAWLFIA-ADDYESA 567 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~--~~~ay~~rg~~l~~l-----g~~~eAl~~~~rAl~l~p~--~~~~~~ra~~~~~-lgd~~~A 567 (754)
..|...+++|+++||+ +..+|..+|.+|... |+.+.|...|+|||+++|+ .+..+..|..+.. .||+++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 6788889999999999 666999999999996 9999999999999999994 7877888887766 5999999
Q ss_pred HHHHHHHHhcCCCc
Q 004426 568 LRDTLALLALESNY 581 (754)
Q Consensus 568 l~d~~~al~l~P~~ 581 (754)
.+.+++|++.+|..
T Consensus 260 ~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 260 DEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHCCGGG
T ss_pred HHHHHHHHcCCCCC
Confidence 99999999999974
No 244
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.02 E-value=8.2e-06 Score=91.21 Aligned_cols=64 Identities=11% Similarity=0.072 Sum_probs=57.9
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHhc--------CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNH--------SSSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 640 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l--------~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
+..+.|+|.++..+|++++|+..+++|+++ .|+-+..++|+|.++..+|+++||...|+||++|
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 456889999999999999999999999966 4556677999999999999999999999999987
No 245
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.92 E-value=3.3e-05 Score=68.23 Aligned_cols=88 Identities=8% Similarity=-0.156 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchH
Q 004426 547 SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSL 626 (754)
Q Consensus 547 ~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al 626 (754)
++...+..|..+...|+|+.|+..|++|++..+... .
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~---------------------------------------~---- 40 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE---------------------------------------I---- 40 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---------------------------------------C----
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC---------------------------------------C----
Confidence 455667889999999999999999999998764320 0
Q ss_pred HHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 004426 627 AVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILY 685 (754)
Q Consensus 627 ~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly 685 (754)
..+..++.+.++|.++.++|++++|+..+++|++++|++..++.|+++.-.
T Consensus 41 --------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~ 91 (104)
T 2v5f_A 41 --------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEY 91 (104)
T ss_dssp --------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred --------CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHH
Confidence 123455778899999999999999999999999999999999999985443
No 246
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.90 E-value=0.00048 Score=78.05 Aligned_cols=47 Identities=15% Similarity=0.009 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 004426 627 AVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 674 (754)
Q Consensus 627 ~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 674 (754)
.+|++||...|.++.+|++.+..+...|++++|...|++|+.. |.+.
T Consensus 200 ~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~ 246 (493)
T 2uy1_A 200 FIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM 246 (493)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence 3455555555555555555555555555555555555555555 5543
No 247
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.86 E-value=2e-05 Score=71.23 Aligned_cols=80 Identities=31% Similarity=0.404 Sum_probs=63.6
Q ss_pred EEEE-ECCeEEehhhHHHhhcCHHHHHhhcC--CCCCCCcceEEecCCCCCHHHHHHHHHHhhcCC-----------CCC
Q 004426 220 VTFC-VRDKEISFVRNKIASLSSPFKAMLYG--GFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR-----------VDL 285 (754)
Q Consensus 220 V~f~-V~g~~f~aHR~iLaa~S~yF~aMf~~--~~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~-----------l~~ 285 (754)
|+++ .+|+.|.++|. .|..|..++.|+.+ .+.|+....|.| ++|+..+++.|++|++.-. ..
T Consensus 19 v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~Ipl--pnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~- 94 (112)
T 1vcb_B 19 VKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNF--REIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP- 94 (112)
T ss_dssp EEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEEC--SSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCC-
T ss_pred EEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeC--CCCCHHHHHHHHHHHHHhhhccCCcCCCCCcc-
Confidence 8887 48899999999 47899999999984 345666678999 9999999999999997643 23
Q ss_pred CChhHHHHHHHHhchhCh
Q 004426 286 FCPGIVLELLSFANRFCC 303 (754)
Q Consensus 286 i~~~~vlelL~aA~~f~l 303 (754)
++.+.+++|+.+||++++
T Consensus 95 vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 95 IAPEIALELLMAANFLDC 112 (112)
T ss_dssp CCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCc
Confidence 788999999999999875
No 248
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.70 E-value=0.00012 Score=67.40 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=81.6
Q ss_pred HHHHHHHcCCCChhHHHhHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 628 VINQMLINDPGKSFLRFRQSLLLLRLNCQKA---AMRCLRLARNHS-S-SEHERLVYEGWILYDTGHREEALSRAEKSIS 702 (754)
Q Consensus 628 ~~~~aL~l~P~~~~~~~~~g~~L~~lg~~ee---Al~~~~~Al~l~-P-~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~ 702 (754)
-|++++..++.+.++.|+.|.+|.+-+.+.+ ++..++..++-+ | ..-+.+|++|..+|++|+|++|....+..++
T Consensus 23 ~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 23 KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6788888899999999999999999998887 999999999988 5 6889999999999999999999999999999
Q ss_pred cCCChH-HHHHHHHH
Q 004426 703 IERTFE-AFFLKAYI 716 (754)
Q Consensus 703 l~~~~~-a~~~~~~~ 716 (754)
++|++. |--||..+
T Consensus 103 ~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 103 TEPQNNQAKELERLI 117 (126)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHH
Confidence 999987 88887654
No 249
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.68 E-value=6.4e-05 Score=83.94 Aligned_cols=64 Identities=9% Similarity=0.013 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVF-----KL-SV---DCLELRAWLFIAADDYESALRDTLALLAL 577 (754)
Q Consensus 514 ~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l-----~p-~~---~~~~~ra~~~~~lgd~~~Al~d~~~al~l 577 (754)
-+..+.|+|.+|..+|+|++|+..++++|++ -| +| ..+++.|.+|..+|++++|+..|++|+++
T Consensus 339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999987 23 24 34678999999999999999999999985
No 250
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.65 E-value=6.5e-05 Score=83.77 Aligned_cols=64 Identities=9% Similarity=-0.044 Sum_probs=56.8
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHHhcC--------CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 640 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHS--------SSEHERLVYEGWILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 640 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~--------P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
+..+.++|.++..+|++++|+..+++++++. |+-+..++++|.++..+|++++|+..|+||++|
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4568889999999999999999999999653 445667899999999999999999999999986
No 251
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.57 E-value=0.00022 Score=79.43 Aligned_cols=113 Identities=14% Similarity=-0.001 Sum_probs=84.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC-----CC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHH
Q 004426 523 VAKMEEGQIRAAISEIDRIIVFK-----LS-V---DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 593 (754)
Q Consensus 523 ~~l~~lg~~~eAl~~~~rAl~l~-----p~-~---~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~ 593 (754)
.-+..+|++++|++.+++++++. |+ + ..+.+.+.+|..+|+|++|+..+++++++.-...
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l----------- 363 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF----------- 363 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS-----------
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc-----------
Confidence 34567899999999999999862 32 3 4467788899999999999999999987542110
Q ss_pred HHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhc----
Q 004426 594 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH---- 669 (754)
Q Consensus 594 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l---- 669 (754)
+ ...|.-+..++|+|.++..+|++++|+..|++|+++
T Consensus 364 ---------------------------g------------~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 364 ---------------------------P------------GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp ---------------------------C------------SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------C------------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 0 012444567899999999999999999999999975
Q ss_pred -CCCchh---HHHHHHHHHH
Q 004426 670 -SSSEHE---RLVYEGWILY 685 (754)
Q Consensus 670 -~P~~~e---a~~~~G~~ly 685 (754)
-|+++. .+.+++.++.
T Consensus 405 lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 405 HGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp TCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHH
Confidence 456544 3445555543
No 252
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=97.52 E-value=0.00018 Score=71.22 Aligned_cols=97 Identities=9% Similarity=-0.006 Sum_probs=76.9
Q ss_pred CCCc-EEEEECCeEEehhhHHHhhcC-HHHHHhhcCCC--C--CCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChh
Q 004426 216 EDDS-VTFCVRDKEISFVRNKIASLS-SPFKAMLYGGF--V--ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG 289 (754)
Q Consensus 216 ~~~~-V~f~V~g~~f~aHR~iLaa~S-~yF~aMf~~~~--~--Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~ 289 (754)
+.+. |+|.|||+.|...+..|.... .+|..||.+.. . ....+++-| |-+|..|+.||+|+.+|++. ++.+
T Consensus 9 ~~~~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI---DRDP~~F~~ILnyLRtG~L~-lP~~ 84 (202)
T 3drx_A 9 SVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI---DRDPTYFGPVLNYLRHGKLV-INKD 84 (202)
T ss_dssp CCCCEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE---CSCSTTHHHHHHHHHHSCCC-CCTT
T ss_pred CCCCEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe---cCChHHHHHHHHHhcCCccC-CCCC
Confidence 3345 999999999999999997654 37899997642 1 112356777 67999999999999999998 4433
Q ss_pred -HHHHHHHHhchhChhhHHHHHHHHHHh
Q 004426 290 -IVLELLSFANRFCCEEMKSACDAHLAS 316 (754)
Q Consensus 290 -~vlelL~aA~~f~l~~Lk~~Ce~~L~~ 316 (754)
....++.-|.+|+|+.|.+.|.+.|..
T Consensus 85 ~~~~~l~eEA~FygL~~Lv~~l~~~i~e 112 (202)
T 3drx_A 85 LAEEGVLEEAEFYNITSLIKLVKDKIRE 112 (202)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 346799999999999999999988864
No 253
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.21 E-value=0.0018 Score=59.42 Aligned_cols=97 Identities=13% Similarity=0.035 Sum_probs=81.9
Q ss_pred hHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcC-C-C-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004426 499 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRA---AISEIDRIIVFK-L-S-VDCLELRAWLFIAADDYESALRDTL 572 (754)
Q Consensus 499 eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~e---Al~~~~rAl~l~-p-~-~~~~~~ra~~~~~lgd~~~Al~d~~ 572 (754)
..-..|.++...++....+-++.|.+++..++..+ +|.-+...+.-+ | . -+++|.+|..+.++|+|+.|++.++
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44456788888889999999999999999888777 999999999876 6 2 5889999999999999999999999
Q ss_pred HHHhcCCCccccccchhhhHHHHHHhhhh
Q 004426 573 ALLALESNYMMFHGRVSGDHLVKLLNHHV 601 (754)
Q Consensus 573 ~al~l~P~~~~~~~~~~~~~~~~~l~~~~ 601 (754)
.+|+.+|++ ..|..+...+...+
T Consensus 99 ~lL~~eP~n------~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 99 GLLQTEPQN------NQAKELERLIDKAM 121 (126)
T ss_dssp HHHHHCTTC------HHHHHHHHHHHHHH
T ss_pred HHHHhCCCC------HHHHHHHHHHHHHH
Confidence 999999987 56666666555443
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.62 E-value=0.02 Score=53.45 Aligned_cols=91 Identities=18% Similarity=0.164 Sum_probs=76.1
Q ss_pred HHHHHHHHHc---CCCChhHHHhHHHHHHHcCCHH---HHHHHHHHHHhcCC-CchhHHHHHHHHHHHcCCHHHHHHHHH
Q 004426 626 LAVINQMLIN---DPGKSFLRFRQSLLLLRLNCQK---AAMRCLRLARNHSS-SEHERLVYEGWILYDTGHREEALSRAE 698 (754)
Q Consensus 626 l~~~~~aL~l---~P~~~~~~~~~g~~L~~lg~~e---eAl~~~~~Al~l~P-~~~ea~~~~G~~ly~~G~~eeAl~~~e 698 (754)
|..+++--.. +.-++...|+.|.+|.+-+..+ +++..++..++-.| +.-+-+|+++..+|++|+|++|...-+
T Consensus 22 L~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d 101 (144)
T 1y8m_A 22 LEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 101 (144)
T ss_dssp HHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4444444433 3678999999999999977665 79999999999998 578999999999999999999999999
Q ss_pred HHHhcCCChH-HHHHHHHH
Q 004426 699 KSISIERTFE-AFFLKAYI 716 (754)
Q Consensus 699 ~Ai~l~~~~~-a~~~~~~~ 716 (754)
..++++|++. |--||..+
T Consensus 102 ~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 102 TLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHTCCCCHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHH
Confidence 9999999997 77676543
No 255
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.37 E-value=0.12 Score=58.45 Aligned_cols=167 Identities=11% Similarity=-0.034 Sum_probs=119.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHh--cCCCcccc
Q 004426 518 YKYRAVAKMEEGQIRAAISEIDRIIVF--KLSVDCLELRAWLFIAA---------DDYESALRDTLALLA--LESNYMMF 584 (754)
Q Consensus 518 y~~rg~~l~~lg~~~eAl~~~~rAl~l--~p~~~~~~~ra~~~~~l---------gd~~~Al~d~~~al~--l~P~~~~~ 584 (754)
+.+.-..+.+.|+.++|+.-|++..+- .|+...|...-.++... ++.+.|...|+...+ +.||-.
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~-- 106 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA-- 106 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH--
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH--
Confidence 455556778899999999999998875 67766665544444433 347889988887765 456632
Q ss_pred ccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccc-hHHHHHHHHHcC-CCChhHHHhHHHHHHHcCCHHHHHHH
Q 004426 585 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRC 662 (754)
Q Consensus 585 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~ 662 (754)
.++ .+...+...++.+ |+.++++|.+.. +-+...|+.+=..+.+.|+.++|++.
T Consensus 107 -----tyn-------------------~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 107 -----TFT-------------------NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp -----HHH-------------------HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----HHH-------------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 122 1111112223333 578888888764 23577888888899999999999999
Q ss_pred HHHHHhc--CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCChHHHH
Q 004426 663 LRLARNH--SSSEHERLVYEGWILYDTGHREEALSRAEKSIS--IERTFEAFF 711 (754)
Q Consensus 663 ~~~Al~l--~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~--l~~~~~a~~ 711 (754)
++...+. .|+ ...+..+=.++.+.|+.++|...+++--+ ++|+-..|.
T Consensus 163 ~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~ 214 (501)
T 4g26_A 163 DAHMVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFD 214 (501)
T ss_dssp HHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHH
T ss_pred HHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 9988764 455 45777777889999999999999998766 588877653
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.29 E-value=0.02 Score=52.81 Aligned_cols=79 Identities=18% Similarity=0.111 Sum_probs=69.5
Q ss_pred CCChhHHHhHHHHHHHcCCH---HHHHHHHHHHHhcCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHH
Q 004426 637 PGKSFLRFRQSLLLLRLNCQ---KAAMRCLRLARNHSS-SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFF 711 (754)
Q Consensus 637 P~~~~~~~~~g~~L~~lg~~---eeAl~~~~~Al~l~P-~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~-a~~ 711 (754)
--++.+.|+.|.+|.+-+.. ..++..++..++.+| ..-|-+|+++...|++|+|++|...-++.++++|++. |--
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 34678999999999997766 469999999999999 4689999999999999999999999999999999998 666
Q ss_pred HHHH
Q 004426 712 LKAY 715 (754)
Q Consensus 712 ~~~~ 715 (754)
||..
T Consensus 117 Lk~~ 120 (134)
T 3o48_A 117 LKSM 120 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 257
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=96.12 E-value=0.0023 Score=57.96 Aligned_cols=84 Identities=7% Similarity=0.020 Sum_probs=64.7
Q ss_pred EEEEECCeEEehhhHHHhhcCH-HHHHhhcCCC-CCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCCh-hHHHHHHH
Q 004426 220 VTFCVRDKEISFVRNKIASLSS-PFKAMLYGGF-VESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCP-GIVLELLS 296 (754)
Q Consensus 220 V~f~V~g~~f~aHR~iLaa~S~-yF~aMf~~~~-~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~-~~vlelL~ 296 (754)
|+|.|||+.|...+..|..-.. .+..||++.. .....+++-| |-+|..|+.||+|+.||++. ++. -.+..++.
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi---DRdp~~F~~ILnylR~G~l~-~p~~~~~~~~~~ 82 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF---DRHPGVFAQIINYYRSGKLH-YPTDVCGPLFEE 82 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE---CSCTTTHHHHHHHHHHSCBC-CCSSSCHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE---ecChHHHHHHHHHhcCCCCC-CCCcccHHHHHH
Confidence 9999999999999999976533 3556665432 1223457877 67899999999999999997 443 34678999
Q ss_pred HhchhChhhHH
Q 004426 297 FANRFCCEEMK 307 (754)
Q Consensus 297 aA~~f~l~~Lk 307 (754)
-|.+|+|+...
T Consensus 83 Ea~fy~i~~~~ 93 (115)
T 3kvt_A 83 ELEFWGLDSNQ 93 (115)
T ss_dssp HHHHHTCCGGG
T ss_pred HHHHhCCChHH
Confidence 99999997653
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.78 E-value=0.13 Score=47.94 Aligned_cols=85 Identities=15% Similarity=0.090 Sum_probs=72.1
Q ss_pred CCCChHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccc
Q 004426 511 DPTLSFPYKYRAVAKMEEGQI---RAAISEIDRIIVFKLS--VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFH 585 (754)
Q Consensus 511 dP~~~~ay~~rg~~l~~lg~~---~eAl~~~~rAl~l~p~--~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~ 585 (754)
++-....-++.|-++....+. .++|.-+...+.-.|. -+++|.+|..+.++|+|++|++..+..|+.+|++
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n---- 110 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN---- 110 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC----
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc----
Confidence 456789999999999997764 5799999999998884 5889999999999999999999999999999987
Q ss_pred cchhhhHHHHHHhhhh
Q 004426 586 GRVSGDHLVKLLNHHV 601 (754)
Q Consensus 586 ~~~~~~~~~~~l~~~~ 601 (754)
..|..+...+...+
T Consensus 111 --~QA~~Lk~~Ie~~i 124 (144)
T 1y8m_A 111 --KQVGALKSMVEDKI 124 (144)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHH
Confidence 56667666665444
No 259
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.78 E-value=0.058 Score=49.75 Aligned_cols=83 Identities=16% Similarity=0.098 Sum_probs=69.1
Q ss_pred ChHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccch
Q 004426 514 LSFPYKYRAVAKMEEGQI---RAAISEIDRIIVFKLS--VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 588 (754)
Q Consensus 514 ~~~ay~~rg~~l~~lg~~---~eAl~~~~rAl~l~p~--~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~ 588 (754)
.+.+-++.|-+++..++. .++|.-+...+.-.|. -+++|.+|..+.++|+|+.|++..+++|+.+|++ .
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N------~ 112 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN------K 112 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC------H
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC------H
Confidence 567888888888887654 5799999999988884 5889999999999999999999999999999987 6
Q ss_pred hhhHHHHHHhhhhc
Q 004426 589 SGDHLVKLLNHHVR 602 (754)
Q Consensus 589 ~~~~~~~~l~~~~~ 602 (754)
.|..+...++..+.
T Consensus 113 QA~~Lk~~Ie~ki~ 126 (134)
T 3o48_A 113 QVGALKSMVEDKIQ 126 (134)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655443
No 260
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=95.65 E-value=0.02 Score=52.49 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=66.0
Q ss_pred EEEEECCeEEehhhHHHhhcCHHHHHhhcCC----CCCCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChh-HHHHH
Q 004426 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGG----FVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG-IVLEL 294 (754)
Q Consensus 220 V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~----~~Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~-~vlel 294 (754)
|+|.|||+.|..-+..|.... .+||... +.....+++-| |-++..|+.||+|+.||++. ++.+ .+..+
T Consensus 15 V~LNVGG~~F~t~~~TL~~~p---~S~L~~~~~~~~~~~~~g~~Fi---DRdp~~F~~ILnflR~G~l~-~p~~~~~~~l 87 (124)
T 1s1g_A 15 IVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFF---DRDPEVFRCVLNFYRTGKLH-YPRYECISAY 87 (124)
T ss_dssp EEEEETTEEEEEEHHHHTTST---TSSTTSSGGGGTBCSSSCSEEE---CSCHHHHHHHHHHHHHSCBC-CCTTSCHHHH
T ss_pred EEEEeCCEEEEEeHHHHhcCC---CceecccCCcccccCCCCcEEE---cCChHHHHHHHHHHhcCCCC-CCCCcCHHHH
Confidence 999999999999999996532 3455441 11123457777 67999999999999999998 5443 47889
Q ss_pred HHHhchhChhhHH-HH-HHHHHH
Q 004426 295 LSFANRFCCEEMK-SA-CDAHLA 315 (754)
Q Consensus 295 L~aA~~f~l~~Lk-~~-Ce~~L~ 315 (754)
+.-|++|+|+.+. .. |.....
T Consensus 88 ~~Ea~fy~i~~l~l~~cC~~~~~ 110 (124)
T 1s1g_A 88 DDELAFYGILPEIIGDCCYEEYK 110 (124)
T ss_dssp HHHHHHTTCCGGGBCHHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHHH
Confidence 9999999998873 34 444333
No 261
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.64 E-value=0.48 Score=53.48 Aligned_cols=154 Identities=8% Similarity=0.027 Sum_probs=104.7
Q ss_pred hhHhhccchHHHHHHHHHHhhhc--ch-hhhhhHHHHHHHh---------CCHHHHHHHHHHHHHcc-CCCHHHHHHh--
Q 004426 427 CVMFEREEYKDACYYFEAAADAG--HI-YSLAGLARAKYKV---------GQQYSAYKLINSIISEH-KPTGWMYQER-- 491 (754)
Q Consensus 427 ~v~~~~g~~~eA~~~f~~AL~~~--~~-~a~~~larv~~~~---------G~~~~A~~~~~~aI~~~-~~~g~ay~~r-- 491 (754)
..+.+.|++++|.+.|+.+.+.+ +. .++.-+-.++... |..+.|...|.+..... .++...|...
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~ 113 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGAR 113 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45567788888888888777663 21 2222221122211 22566777777776543 2233333222
Q ss_pred --hhcCChhhHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHH
Q 004426 492 --SLYNLGREKIVDLNYASEL--DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF--KLSVDCLELRAWLFIAADDYE 565 (754)
Q Consensus 492 --~~y~~g~eAl~dl~kAi~L--dP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l--~p~~~~~~~ra~~~~~lgd~~ 565 (754)
+..+..++|...|++..+. .| +...|..+-..+.+.|+.++|..-|++..+- .|+...|...-.++.+.|+.+
T Consensus 114 ~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d 192 (501)
T 4g26_A 114 LAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNAD 192 (501)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHH
Confidence 2223447888888876654 45 5778999999999999999999999998875 677777777888899999999
Q ss_pred HHHHHHHHHHh--cCCCc
Q 004426 566 SALRDTLALLA--LESNY 581 (754)
Q Consensus 566 ~Al~d~~~al~--l~P~~ 581 (754)
+|.+.|++.-+ ..|+-
T Consensus 193 ~A~~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 193 KVYKTLQRLRDLVRQVSK 210 (501)
T ss_dssp HHHHHHHHHHHHTSSBCH
T ss_pred HHHHHHHHHHHhCCCcCH
Confidence 99999998766 55664
No 262
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=95.54 E-value=0.011 Score=55.25 Aligned_cols=80 Identities=13% Similarity=0.078 Sum_probs=62.6
Q ss_pred EEEEECCeEEehhhHHHhhcCHHHHHhhcCCCC----CCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChh-HHHHH
Q 004426 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFV----ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG-IVLEL 294 (754)
Q Consensus 220 V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~----Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~-~vlel 294 (754)
|+|.|||+.|...+..|...- .+||...-+ ....+++-| |-++..|+.||+|+.||++. ++.+ .+..+
T Consensus 37 V~LNVGG~~F~T~~~TL~~~P---~S~L~~~~~~~~~~~~~g~yFi---DRdp~~F~~ILnflR~G~l~-~p~~~~~~~l 109 (140)
T 2nz0_B 37 IVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFF---DRDPEVFRCVLNFYRTGKLH-YPRYECISAY 109 (140)
T ss_dssp EEEEETTEEEEEEHHHHHTCT---TSTTTSGGGGGSEETTTTEEEE---CSCHHHHHHHHHHHHHSSBC-CCTTSCHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCC---CeeecccCCcccccCCCCeEEE---eCCcHHHHHHHHHHhcCCcC-CCCCcCHHHH
Confidence 999999999999999997532 456654111 123457777 67999999999999999998 4443 47889
Q ss_pred HHHhchhChhhH
Q 004426 295 LSFANRFCCEEM 306 (754)
Q Consensus 295 L~aA~~f~l~~L 306 (754)
+.-|++|+|+.+
T Consensus 110 ~eEa~fy~i~~l 121 (140)
T 2nz0_B 110 DDELAFYGILPE 121 (140)
T ss_dssp HHHHHHHTCCGG
T ss_pred HHHHHHcCCChH
Confidence 999999999887
No 263
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=95.27 E-value=0.01 Score=52.28 Aligned_cols=82 Identities=10% Similarity=-0.004 Sum_probs=60.5
Q ss_pred EEEEECCeEEehhhHHHhhcCHHHHHhhcCCC-----CCCCcceEEecCCCCCHHHHHHHHHHhhc-CCCCCCChhHHHH
Q 004426 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGF-----VESKRKTIDFSHDGVSVEGLRAVEVYTRT-SRVDLFCPGIVLE 293 (754)
Q Consensus 220 V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~-----~Es~~~~I~l~~~~vs~~~f~~lL~ylYT-g~l~~i~~~~vle 293 (754)
|++.|||+.|...+..|..- -.+||..-+ .....+++-| |-+|..|+.||+|+.| |++.....-.+..
T Consensus 3 v~LNVGG~~f~t~~~TL~~~---p~s~L~~~~~~~~~~~~~~~eyFi---DRdp~~F~~ILnflR~~G~l~~p~~~~~~~ 76 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQF---PDTLLGNPQKRNRYYDPLRNEYFF---DRNRPSFDAILYFYQSGGRLRRPVNVPLDV 76 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTS---TTSTTTCHHHHGGGEETTTTEEEE---CSCSTTHHHHHHHHHTTSCCCCCTTSCHHH
T ss_pred EEEEECCEEEEeeHHHHhcC---CCccccchhccccccCCCceeEEE---cCChHHHHHHHHHHhcCCcccCCCCCCHHH
Confidence 88999999999999999643 233443211 1123457878 6789999999999999 8987322334788
Q ss_pred HHHHhchhChhhHH
Q 004426 294 LLSFANRFCCEEMK 307 (754)
Q Consensus 294 lL~aA~~f~l~~Lk 307 (754)
++.-|++|+|+.+.
T Consensus 77 ~~~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 77 FSEEIKFYELGENA 90 (100)
T ss_dssp HHHHHHHTTCCHHH
T ss_pred HHHHHHHcCCCHHH
Confidence 99999999997653
No 264
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=95.15 E-value=0.0078 Score=53.53 Aligned_cols=80 Identities=9% Similarity=0.062 Sum_probs=61.4
Q ss_pred EEEEECCeEEehhhHHHhhcCHHHHHhhcCCCC----CCCcceEEecCCCCCHHHHHHHHHHhhcCCCCCCChh-HHHHH
Q 004426 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFV----ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG-IVLEL 294 (754)
Q Consensus 220 V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~~~----Es~~~~I~l~~~~vs~~~f~~lL~ylYTg~l~~i~~~-~vlel 294 (754)
|++.|||+.|...+..|.... .+||....+ ....+++-| |-+|..|+.||+|+-||++. ++.+ .+..+
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p---~s~L~~~~~~~~~~~~~~~~Fi---DRdp~~F~~ILnflR~g~l~-~p~~~~~~~l 74 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYP---DTLLGSSERDFFYHPETQQYFF---DRDPDIFRHILNFYRTGKLH-YPRHECISAY 74 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSC---SSSTTSGGGGGGEEGGGTEEEE---CSCTTTHHHHHHHHHHSCBC-CCTTSCHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCC---CccccccCCcccccCCCCcEEE---eCCcHHHHHHHHHHhcCCCC-CCCCcCHHHH
Confidence 789999999999999997543 345554111 112357777 67999999999999999987 4433 47889
Q ss_pred HHHhchhChhhH
Q 004426 295 LSFANRFCCEEM 306 (754)
Q Consensus 295 L~aA~~f~l~~L 306 (754)
+.-|++|+|+.+
T Consensus 75 ~~Ea~fy~i~~l 86 (105)
T 1nn7_A 75 DEELAFFGLIPE 86 (105)
T ss_dssp HHHHHHHTCCSC
T ss_pred HHHHHHcCCCHH
Confidence 999999999886
No 265
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.84 E-value=0.66 Score=50.49 Aligned_cols=76 Identities=12% Similarity=-0.020 Sum_probs=63.4
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCChHHHHHHHHH
Q 004426 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI-------SIERTFEAFFLKAYI 716 (754)
Q Consensus 644 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai-------~l~~~~~a~~~~~~~ 716 (754)
..++.++..+|++++|+..++++++.+|-+-.++..+=.+|+..|+..+|++.|++.- .+.|+-+---+-.-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~i 254 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERI 254 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4467788999999999999999999999999999999999999999999999998864 468888843333334
Q ss_pred hhc
Q 004426 717 LAD 719 (754)
Q Consensus 717 ~~~ 719 (754)
|.+
T Consensus 255 l~~ 257 (388)
T 2ff4_A 255 LRQ 257 (388)
T ss_dssp HTT
T ss_pred HcC
Confidence 443
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.74 E-value=4 Score=47.20 Aligned_cols=87 Identities=13% Similarity=0.144 Sum_probs=66.3
Q ss_pred ccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 622 DIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (754)
Q Consensus 622 d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai 701 (754)
+.++...++++....+.+....+..+.+| +.|+++.|.+.+++.-.-.++...+.|.+|-.+..+|+-++|-..|+++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~e~~~r~Al-r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQSTSLIERRVRMAL-GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp CHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHhccccCCChHHHHHHHHHHH-HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44567778887766555544445555554 67999999999987666445668889999999999999999999999998
Q ss_pred hcCCChHHH
Q 004426 702 SIERTFEAF 710 (754)
Q Consensus 702 ~l~~~~~a~ 710 (754)
. .++|=.+
T Consensus 347 ~-~~~fYg~ 354 (618)
T 1qsa_A 347 Q-QRGFYPM 354 (618)
T ss_dssp T-SCSHHHH
T ss_pred c-CCChHHH
Confidence 7 5676443
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.30 E-value=0.29 Score=50.51 Aligned_cols=129 Identities=12% Similarity=0.037 Sum_probs=86.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhh
Q 004426 523 VAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV 601 (754)
Q Consensus 523 ~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~ 601 (754)
..+.+.|+.++|++.....|+-+|. .+.-.....++.-.|+|+.|+.-++.+.+++|++.+ .+...+.+++...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~-----~a~~yr~lI~aE~ 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP-----GASQLRHLVKAAQ 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH-----HHHHHHHHHHHHH
Confidence 3567789999999999999999995 655555677899999999999999999999999742 2222233333322
Q ss_pred ccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 004426 602 RSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 674 (754)
Q Consensus 602 ~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 674 (754)
.+.+-. .-...-.-+ -+|..-....-.++.....|+.++|.+.-.+|++..|..+
T Consensus 80 ~R~~vf-------aG~~~P~~~-----------g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 80 ARKDFA-------QGAATAKVL-----------GENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHT-------TSCCCEECC-----------CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHH-------cCCCCCCCC-----------CCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 222111 110000111 1122223344466777888999999999999999988754
No 268
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.26 E-value=0.16 Score=48.63 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------C--------------------HHHHHHHHHHHHHcCCHHHHHH
Q 004426 516 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL------S--------------------VDCLELRAWLFIAADDYESALR 569 (754)
Q Consensus 516 ~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p------~--------------------~~~~~~ra~~~~~lgd~~~Al~ 569 (754)
..+.+.|.++...|+|..|...|++||.+.- + .+.-|..+.||.++|++++|+.
T Consensus 64 ~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~ 143 (167)
T 3ffl_A 64 QLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIA 143 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHH
Confidence 4789999999999999999999999987721 1 1344566789999999999999
Q ss_pred HHHHH
Q 004426 570 DTLAL 574 (754)
Q Consensus 570 d~~~a 574 (754)
-++.+
T Consensus 144 ~Le~I 148 (167)
T 3ffl_A 144 ILDGI 148 (167)
T ss_dssp HHHTS
T ss_pred HHhcC
Confidence 87764
No 269
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.14 E-value=0.4 Score=45.21 Aligned_cols=53 Identities=15% Similarity=0.056 Sum_probs=46.3
Q ss_pred hHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHH
Q 004426 625 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 677 (754)
Q Consensus 625 al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 677 (754)
+-.+|+.|+.+....+..|...|..-.+.|....|...+.+|+.+.|...+.+
T Consensus 79 aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 79 ARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp CHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 47789999888888889999999999999999999999999999999876653
No 270
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.12 E-value=5.2 Score=46.27 Aligned_cols=234 Identities=12% Similarity=0.040 Sum_probs=138.4
Q ss_pred HHHHhCCHHHHHHHHHHHHHccC-CCHHHHHHh-----hhcCC--hhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 004426 460 AKYKVGQQYSAYKLINSIISEHK-PTGWMYQER-----SLYNL--GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQI 531 (754)
Q Consensus 460 v~~~~G~~~~A~~~~~~aI~~~~-~~g~ay~~r-----~~y~~--g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~ 531 (754)
......+.+.|...+........ +.......+ ..... ..++..-+.++..-.++... .-.++-.-+..|++
T Consensus 223 ~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 223 ASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALGTGDR 301 (618)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHHTCH
T ss_pred HHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHHCCCH
Confidence 34455577778777776654322 111111111 11111 24566666666554443333 22333333467999
Q ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhh
Q 004426 532 RAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCW 610 (754)
Q Consensus 532 ~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~ 610 (754)
+.|...|++.-.-..+ +...|.+|.++.++|+-++|...|+++.. +. .|||..++..+.........
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~--~fYg~lAa~~Lg~~~~~~~~-------- 369 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QR--GFYPMVAAQRIGEEYELKID-------- 369 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SC--SHHHHHHHHHTTCCCCCCCC--------
T ss_pred HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--ChHHHHHHHHcCCCCCCCCC--------
Confidence 9999999876542223 66678888899999999999999999986 32 36777666554321100000
Q ss_pred hhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCH
Q 004426 611 IKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHR 690 (754)
Q Consensus 611 ~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~ 690 (754)
.+.... ...+..+| -+.++..|..+|...+|.+-.+.+++..+ .+-...++.+....|.+
T Consensus 370 --------~~~~~~-----~~~~~~~~-----~~~r~~~L~~~g~~~~a~~ew~~~~~~~~--~~~~~~la~~a~~~~~~ 429 (618)
T 1qsa_A 370 --------KAPQNV-----DSALTQGP-----EMARVRELMYWNLDNTARSEWANLVKSKS--KTEQAQLARYAFNNQWW 429 (618)
T ss_dssp --------CCCSCC-----CCHHHHSH-----HHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTTCH
T ss_pred --------CCChhH-----HhhhccCh-----HHHHHHHHHHCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCh
Confidence 000000 01122222 25678889999999999998888876432 34456778888889999
Q ss_pred HHHHHHHHHHHhcC------C--------------ChHHHHHHHHHhhccCCCCCc
Q 004426 691 EEALSRAEKSISIE------R--------------TFEAFFLKAYILADTNLDPES 726 (754)
Q Consensus 691 eeAl~~~e~Ai~l~------~--------------~~~a~~~~~~~~~~~~~~~~~ 726 (754)
+.++....++-..+ | .....++.|++.-.|+.||..
T Consensus 430 ~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a 485 (618)
T 1qsa_A 430 DLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPKV 485 (618)
T ss_dssp HHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCC
Confidence 98887665433222 1 222346667777778777753
No 271
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.11 E-value=0.41 Score=52.17 Aligned_cols=100 Identities=12% Similarity=0.061 Sum_probs=72.3
Q ss_pred HHHhCCHHHHHHHHHHHHHccCC--C------HHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Q 004426 461 KYKVGQQYSAYKLINSIISEHKP--T------GWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIR 532 (754)
Q Consensus 461 ~~~~G~~~~A~~~~~~aI~~~~~--~------g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~ 532 (754)
....|+...|...+.+|+.++.. + .|+...+..+ .-....+...++.++..+|++.
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l----------------~~~~~~a~~~~~~~~l~~g~~~ 188 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATAL----------------VEDKVLAHTAKAEAEIACGRAS 188 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHH----------------HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH----------------HHHHHHHHHHHHHHHHHCCCHH
Confidence 34567888888999999888732 1 1222222111 1112234566888999999999
Q ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 533 AAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 533 eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
+|+..+.++++.+|- -..+...-.++...|+..+|++.|++.-+
T Consensus 189 ~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999994 55566666789999999999999988754
No 272
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.07 E-value=0.2 Score=47.97 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=57.7
Q ss_pred CChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchh---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004426 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE---------RLVYEGWILYDTGHREEALSRAEKSISIER 705 (754)
Q Consensus 638 ~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e---------a~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~ 705 (754)
++..+++.+...+...+.++-|+-.+..++.+..++.+ ++++.|.++|.+|+|..|...|++|+.+..
T Consensus 18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k 94 (167)
T 3ffl_A 18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK 94 (167)
T ss_dssp ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 34456778888899999999999999998888766666 899999999999999999999999987543
No 273
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.36 E-value=1 Score=53.17 Aligned_cols=56 Identities=16% Similarity=-0.021 Sum_probs=43.3
Q ss_pred hHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHH
Q 004426 641 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSR 696 (754)
Q Consensus 641 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ 696 (754)
.+..-++.-|...|+++-|+...++|....|++=...+.++.+|..+|+||.|+-.
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLt 393 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFA 393 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHH
Confidence 45556777777778888888888888888888888888888888888888888744
No 274
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.16 E-value=5.2 Score=38.43 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=85.1
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCcc
Q 004426 508 SELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA----LESNYM 582 (754)
Q Consensus 508 i~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~al~----l~P~~~ 582 (754)
-.|-|..++.-+-.+.++.-.|.|..|+-.+. +.+ .-..+....++..++||..|+..++.+++ -||+-
T Consensus 26 a~L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~- 99 (242)
T 3kae_A 26 ACLLPCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDV- 99 (242)
T ss_dssp HHHC----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCC-
T ss_pred HHHccCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc-
Confidence 34567777777888999999999888776542 344 45567788999999999999999999994 33542
Q ss_pred ccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhH-HHhHHHHHHHcCCHHHHHH
Q 004426 583 MFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL-RFRQSLLLLRLNCQKAAMR 661 (754)
Q Consensus 583 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~-~~~~g~~L~~lg~~eeAl~ 661 (754)
.|+ -+..-+||.+-+. +...|.++..+|..+||++
T Consensus 100 -----------------------d~~---------------------~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~ 135 (242)
T 3kae_A 100 -----------------------DAR---------------------IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIG 135 (242)
T ss_dssp -----------------------CHH---------------------HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------------------ccc---------------------cceeeeccchHHHHHHHHHHHHHHhcCHHHhhh
Confidence 011 1223456888776 4567999999999999999
Q ss_pred HHHHHHhcCCCch
Q 004426 662 CLRLARNHSSSEH 674 (754)
Q Consensus 662 ~~~~Al~l~P~~~ 674 (754)
.+.+...+.|-.+
T Consensus 136 y~~~Sf~~~~lf~ 148 (242)
T 3kae_A 136 HYVRSFGKSFLFS 148 (242)
T ss_dssp HHHHHHHHCCCHH
T ss_pred HhhhhcCCccccc
Confidence 9999999887643
No 275
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.51 E-value=2.7 Score=39.57 Aligned_cols=51 Identities=8% Similarity=0.021 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV 548 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~ 548 (754)
++|-..|+.++.+...++..|...|.--.++|+...|...+.+||++.|.+
T Consensus 77 d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 77 DDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp GGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 455555666665666666666666666666666666666666666666654
No 276
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.44 E-value=0.99 Score=50.88 Aligned_cols=63 Identities=14% Similarity=0.028 Sum_probs=34.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 646 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 646 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
+|.+--.......|.+.|++|+.++|+++..++.+|.+....|+.-+|+=.|-||+.-...|+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~ 220 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP 220 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh
Confidence 444444444445555555555555555555555555555555555555555555555433343
No 277
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.22 E-value=6 Score=46.02 Aligned_cols=49 Identities=8% Similarity=-0.055 Sum_probs=37.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 522 AVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLAL 574 (754)
Q Consensus 522 g~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~a 574 (754)
....+++|++++|.+..+. -.++..|...|..+.+.|+++.|++.|.++
T Consensus 659 f~~~l~~~~~~~A~~~~~~----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTD----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTT----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eehhhhcCCHHHHHHHHHh----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3455678888888876432 134777888888889999999999988876
No 278
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.44 E-value=2.2 Score=50.45 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=46.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004426 521 RAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLAL 574 (754)
Q Consensus 521 rg~~l~~lg~~~eAl~~~~rAl~l~p~-~~~~~~ra~~~~~lgd~~~Al~d~~~a 574 (754)
=+.-++..|+++-|+...++|+...|+ ..+|+.++.+|..+|||+.|+--++-.
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 355667789999999999999999996 899999999999999999999776655
No 279
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.72 E-value=2.3 Score=43.80 Aligned_cols=60 Identities=18% Similarity=-0.012 Sum_probs=53.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 004426 649 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 708 (754)
Q Consensus 649 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~ 708 (754)
-+++-|..++|+......++-+|.|++....+-.+|.-.|+++.|....+-+..++|++.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 456778899999999999999999999999999999999999999999999999999887
No 280
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=80.24 E-value=21 Score=41.26 Aligned_cols=38 Identities=8% Similarity=-0.122 Sum_probs=19.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004426 523 VAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRD 570 (754)
Q Consensus 523 ~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d 570 (754)
..+...|..++|+...+ ++ ..+..+...+|++++|.+.
T Consensus 637 ~~l~~~~~~~~a~~~~~-------~~---~~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 637 RFLEGQEYYEEALNISP-------DQ---DQKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHHHHTTCHHHHHHHCC-------CH---HHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhCCChHHheecCC-------Cc---chheehhhhcCCHHHHHHH
Confidence 34445566666554331 22 1223445667777777665
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.55 E-value=1.8 Score=48.71 Aligned_cols=136 Identities=9% Similarity=-0.035 Sum_probs=51.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH---c--------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc------
Q 004426 521 RAVAKMEEGQIRAAISEIDRIIV---F--------KL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYM------ 582 (754)
Q Consensus 521 rg~~l~~lg~~~eAl~~~~rAl~---l--------~p-~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~------ 582 (754)
.-.-+.+.+++++|.+.-+..+. + |+ ....|+.-..++..+|+..+.+.......++.|...
T Consensus 142 ~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta 221 (523)
T 4b4t_S 142 VQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIA 221 (523)
T ss_dssp -------------------------------------------------------------CHHHHHHHHTHHHHHHHHC
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHH
Confidence 33446667888888877665551 1 12 123344344455667777665444444333333210
Q ss_pred ----ccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCC-------hhHHHhHHHHHH
Q 004426 583 ----MFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK-------SFLRFRQSLLLL 651 (754)
Q Consensus 583 ----~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~-------~~~~~~~g~~L~ 651 (754)
...++....++.-........+++| ...+.++. .|.+ +.++|..|.+..
T Consensus 222 ~lr~D~~~qa~l~nllLRnYL~~~~y~qA------------------~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a 281 (523)
T 4b4t_S 222 SLKHDNETKAMLINLILRDFLNNGEVDSA------------------SDFISKLE--YPHTDVSSSLEARYFFYLSKINA 281 (523)
T ss_dssp CSCSSSCHHHHHHHHHHHHHHHSSCSTTH------------------HHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhHHHHHHHHHHHHccCcHHHH------------------HHHHhcCc--CCcccCCHHHHHHHHHHHHHHHH
Confidence 0113333444443333344445555 34444442 3322 567888999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCchhH
Q 004426 652 RLNCQKAAMRCLRLARNHSSSEHER 676 (754)
Q Consensus 652 ~lg~~eeAl~~~~~Al~l~P~~~ea 676 (754)
..+++.+|.+.+..|++..|.+..+
T Consensus 282 ~q~~Y~eA~~~L~~A~rkap~~~~a 306 (523)
T 4b4t_S 282 IQLDYSTANEYIIAAIRKAPHNSKS 306 (523)
T ss_dssp HTTCHHHHHHHHHHHTSSCSCSSSC
T ss_pred HhccHHHHHHHHHHHHHhCCcchhh
Confidence 9999999999999999999876543
No 282
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=78.17 E-value=38 Score=32.52 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH--HcC---------------C-CHHHH-HHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 516 FPYKYRAVAKMEEGQIRAAISEIDRII--VFK---------------L-SVDCL-ELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 516 ~ay~~rg~~l~~lg~~~eAl~~~~rAl--~l~---------------p-~~~~~-~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
-+-++.+.+|..+++|..|+..+...| ..+ | +-+.+ ...|.++-+.|+-+||+..|.....
T Consensus 63 Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 63 TSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 445667788999999999999999999 222 3 22233 3477899999999999999999999
Q ss_pred cCCCc
Q 004426 577 LESNY 581 (754)
Q Consensus 577 l~P~~ 581 (754)
.+|-+
T Consensus 143 ~~~lf 147 (242)
T 3kae_A 143 KSFLF 147 (242)
T ss_dssp HCCCH
T ss_pred Ccccc
Confidence 98866
No 283
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.17 E-value=3.8 Score=35.74 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=31.4
Q ss_pred CChhHHHHHHHHhchhChhhHHHHHHHHHHhhcC
Q 004426 286 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 319 (754)
Q Consensus 286 i~~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~ 319 (754)
++++|.+.++.+|+.|+++.|+..|.+|+.++..
T Consensus 8 L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~ 41 (105)
T 2eqx_A 8 VQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLA 41 (105)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999987654
No 284
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.91 E-value=14 Score=45.77 Aligned_cols=139 Identities=13% Similarity=-0.006 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccccccchhhhHHHHHH
Q 004426 520 YRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLAL-ESNYMMFHGRVSGDHLVKLL 597 (754)
Q Consensus 520 ~rg~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd~~~Al~d~~~al~l-~P~~~~~~~~~~~~~~~~~l 597 (754)
.+..-+...|+++-|.+ .+.+-| ++..-+.+|.++...|++++|...|++|..- .++.. .......
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~-------l~~~~~~- 884 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTS-------QFAVLRE- 884 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCC-------SCSSHHH-
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccch-------hhhhhcc-
Confidence 34455666777765543 334445 4655688999999999999999999987542 12110 0000000
Q ss_pred hhhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchh--
Q 004426 598 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE-- 675 (754)
Q Consensus 598 ~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e-- 675 (754)
+..+........+.+.+|.....++.+.|.++.+++..+.|++..+.+.+
T Consensus 885 ----------------------------~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~ 936 (1139)
T 4fhn_B 885 ----------------------------FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL 936 (1139)
T ss_dssp ----------------------------HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHH
T ss_pred ----------------------------cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhh
Confidence 00011111112223445566666777788888888888888877654433
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHH
Q 004426 676 ---RLVYEGWILYDTGHREEALSRAE 698 (754)
Q Consensus 676 ---a~~~~G~~ly~~G~~eeAl~~~e 698 (754)
.+.+.=....++|+|++|....-
T Consensus 937 ~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 937 SIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 23333445677788888866553
No 285
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=75.58 E-value=53 Score=31.46 Aligned_cols=51 Identities=18% Similarity=0.011 Sum_probs=37.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 521 RAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALL 575 (754)
Q Consensus 521 rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al 575 (754)
|-..-++.|+++.|.+..+.. -+...|...|..-...|+++=|..+|+++-
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 334456778888888776543 346778888888888888888888887753
No 286
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.47 E-value=45 Score=36.12 Aligned_cols=61 Identities=7% Similarity=-0.069 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCHHH----HHHHHHHHH-HcCCHHHHHHHHHHHH
Q 004426 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFK----LSVDC----LELRAWLFI-AADDYESALRDTLALL 575 (754)
Q Consensus 515 ~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~----p~~~~----~~~ra~~~~-~lgd~~~Al~d~~~al 575 (754)
.+.|..-..++..++++..+-+.|.+|.... ++|.. ...-|..+. ..++|+.|-.+|-.+.
T Consensus 139 lev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 139 VEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 4556677778888888888888888886653 44422 123556777 7888888888888776
No 287
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=73.96 E-value=3.2 Score=46.92 Aligned_cols=81 Identities=11% Similarity=0.061 Sum_probs=60.1
Q ss_pred EEEEECCeEEehhhHHHhhcCHHHHHhhcCC-----CCCCCcceEEecCCCCCHHHHHHHHHHhhc-CCCCCCChh-HHH
Q 004426 220 VTFCVRDKEISFVRNKIASLSSPFKAMLYGG-----FVESKRKTIDFSHDGVSVEGLRAVEVYTRT-SRVDLFCPG-IVL 292 (754)
Q Consensus 220 V~f~V~g~~f~aHR~iLaa~S~yF~aMf~~~-----~~Es~~~~I~l~~~~vs~~~f~~lL~ylYT-g~l~~i~~~-~vl 292 (754)
|++-|||+.|...+..|..- =.+||... +.....+++-+ |-+|..|+.+|+|+.| |++. .+.+ .+.
T Consensus 54 v~lNVgG~~f~t~~~tL~~~---p~s~l~~~~~~~~~~~~~~~~~f~---DR~~~~F~~IL~~~r~~g~l~-~p~~~~~~ 126 (514)
T 2r9r_B 54 VVINISGLRFETQLKTLAQF---PETLLGDPKKRMRYFDPLRNEYFF---DRNRPSFDAILYYYQSGGRLR-RPVNVPLD 126 (514)
T ss_dssp EEEEETTEEEEEEHHHHTTS---TTSTTTCHHHHGGGEETTTTEEEE---CSCHHHHHHHHHHHHHTSCCC-CCTTSCHH
T ss_pred EEEEeCCEEEEecHHHHhcC---CCCcccccccCCcccCCCCCCEEE---cCChHHHHHHHHHHhcCCccc-cCCcccHH
Confidence 99999999999999999642 23444321 11223457777 7799999999999999 9987 4433 456
Q ss_pred HHHHHhchhChhhHH
Q 004426 293 ELLSFANRFCCEEMK 307 (754)
Q Consensus 293 elL~aA~~f~l~~Lk 307 (754)
.++.=|++|+++.+.
T Consensus 127 ~~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 127 IFSEEIRFYELGEEA 141 (514)
T ss_dssp HHHHHHHHTTCCHHH
T ss_pred HHHHHHHhcCCCHHH
Confidence 788889999997653
No 288
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=72.94 E-value=22 Score=38.59 Aligned_cols=76 Identities=8% Similarity=-0.106 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCCChhHHH------hHHHHHHHcCCHHHHHHHHHHHHhcCC------CchhHHHHHHHHHHHcCCHHHHH
Q 004426 627 AVINQMLINDPGKSFLRF------RQSLLLLRLNCQKAAMRCLRLARNHSS------SEHERLVYEGWILYDTGHREEAL 694 (754)
Q Consensus 627 ~~~~~aL~l~P~~~~~~~------~~g~~L~~lg~~eeAl~~~~~Al~l~P------~~~ea~~~~G~~ly~~G~~eeAl 694 (754)
.++..+++-.-+.-..|. ++|.++...|++.+|+..+++.++--. .--|.+..+..++..+|++.++-
T Consensus 80 ~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k 159 (394)
T 3txn_A 80 QLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKAR 159 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHH
Confidence 345555554433333332 688899999999999999998887321 23566777888899999999999
Q ss_pred HHHHHHHh
Q 004426 695 SRAEKSIS 702 (754)
Q Consensus 695 ~~~e~Ai~ 702 (754)
+.|++|..
T Consensus 160 ~~l~~a~~ 167 (394)
T 3txn_A 160 AALTSART 167 (394)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988854
No 289
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=70.99 E-value=2.9 Score=36.10 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=30.4
Q ss_pred cCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhh
Q 004426 318 VGDIEDALILIDYGLEERATLLVASCLQVLLREL 351 (754)
Q Consensus 318 i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~ 351 (754)
++ .+|+..++..|..++.+.|++.|.+|+.+++
T Consensus 77 ~~-~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 77 LE-ADTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 56 6999999999999999999999999998874
No 290
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.70 E-value=27 Score=43.26 Aligned_cols=112 Identities=12% Similarity=-0.083 Sum_probs=76.2
Q ss_pred hhhHHHHHHHhCCHHHHHHHHHHHHHccCCCHHHHHHhhhcCChhhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Q 004426 454 LAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRA 533 (754)
Q Consensus 454 ~~~larv~~~~G~~~~A~~~~~~aI~~~~~~g~ay~~r~~y~~g~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~e 533 (754)
.+-+|+++...|++++|...|.++...-..... .. .-...+.............+.+|.....++-+.|.++.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~------l~-~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~ 917 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTS------QF-AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYID 917 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCC------SC-SSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccch------hh-hhhcccccccccccccccHHHHHHHHHHHHHHcCCHHH
Confidence 466899999999999999999887432210000 00 00122333334444555567788888888888999999
Q ss_pred HHHHHHHHHHcCC-CHH-----HHHHHHHHHHHcCCHHHHHHHHH
Q 004426 534 AISEIDRIIVFKL-SVD-----CLELRAWLFIAADDYESALRDTL 572 (754)
Q Consensus 534 Al~~~~rAl~l~p-~~~-----~~~~ra~~~~~lgd~~~Al~d~~ 572 (754)
++.-...||+..+ +.+ .|.+....+.++|+|++|-..+.
T Consensus 918 vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 918 ALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 9999999999865 322 34455568999999999976553
No 291
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=68.17 E-value=14 Score=41.42 Aligned_cols=61 Identities=18% Similarity=0.064 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHH
Q 004426 498 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK-LSVDCLELRAWLF 558 (754)
Q Consensus 498 ~eAl~dl~kAi~LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~-p~~~~~~~ra~~~ 558 (754)
..|...|.+|..++|++..+|+.+|.+....|+.-+|+-.|-|++.-. |-+.+..+...++
T Consensus 169 ~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 169 SQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 677888999999999999999999999999999999999999999764 3455555555443
No 292
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.65 E-value=41 Score=36.63 Aligned_cols=68 Identities=12% Similarity=-0.008 Sum_probs=52.3
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004426 511 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALE 578 (754)
Q Consensus 511 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l~p~----~~~~~~ra~~~~~lgd~~~Al~d~~~al~l~ 578 (754)
+..-..++..+|..+.+.|++++|+..|.++...-.+ .+.+.....++...+||..|...+.+|..+-
T Consensus 127 e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~ 198 (429)
T 4b4t_R 127 ELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMI 198 (429)
T ss_dssp CCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 3445668888999999999999999999998876432 3445555567888899999999999987653
No 293
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=54.61 E-value=13 Score=31.72 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=25.1
Q ss_pred hhHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 004426 640 SFLRFRQSLLLLRLNCQKAAMRCLRLAR 667 (754)
Q Consensus 640 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al 667 (754)
+..+-+++..+++-|+++||+.+.++|.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 6778899999999999999999888776
No 294
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=54.26 E-value=8.1 Score=36.07 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=30.9
Q ss_pred CChhHHHHHHHHhchhChhhHHHHHHHHHHhhcC
Q 004426 286 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 319 (754)
Q Consensus 286 i~~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~ 319 (754)
++.+++++++.+|+.|+++.|+..|.+|+.++..
T Consensus 132 l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~ 165 (172)
T 3htm_A 132 LSVENAAEILILADLHSADQLKTQAVDFINYHAT 165 (172)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999988765
No 295
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=53.72 E-value=1e+02 Score=37.74 Aligned_cols=72 Identities=7% Similarity=-0.087 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh--cCCCccccc
Q 004426 514 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVF--KLSVDCLELRAWLFIAADD-YESALRDTLALLA--LESNYMMFH 585 (754)
Q Consensus 514 ~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~l--~p~~~~~~~ra~~~~~lgd-~~~Al~d~~~al~--l~P~~~~~~ 585 (754)
+...|+-+-..|.+.|+.++|+.-|++..+- .||.-.|...-..+.+.|+ .++|...|+.-.+ +.||...|.
T Consensus 164 dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~ 240 (1134)
T 3spa_A 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240 (1134)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcc
Confidence 3456666666666666666666666666543 4555555544445555565 3566666665555 445554433
No 296
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=53.08 E-value=4.4 Score=36.86 Aligned_cols=35 Identities=11% Similarity=0.018 Sum_probs=31.8
Q ss_pred cCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhh
Q 004426 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRELPS 353 (754)
Q Consensus 318 i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~ 353 (754)
++ .+|+..++..|..++.+.|++.|.+||..++..
T Consensus 101 i~-~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~ 135 (138)
T 2z8h_A 101 LS-KDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLD 135 (138)
T ss_dssp CC-TTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSC
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 56 699999999999999999999999999888753
No 297
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=52.93 E-value=1.2e+02 Score=37.05 Aligned_cols=66 Identities=8% Similarity=-0.086 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCc
Q 004426 516 FPYKYRAVAKMEEGQIRAAISEIDRII-----VFKLSVDCLELRAWLFIAADDYESALRDTLALLA--LESNY 581 (754)
Q Consensus 516 ~ay~~rg~~l~~lg~~~eAl~~~~rAl-----~l~p~~~~~~~ra~~~~~lgd~~~Al~d~~~al~--l~P~~ 581 (754)
..|+.+-..|.+.|+.++|..-|+..- ...|+...|+..-..|.+.|++++|+..|+.-.+ +.||-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv 200 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence 457778889999999999999997643 4689988888888889999999999999998877 55764
No 298
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=52.87 E-value=16 Score=31.27 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004426 515 SFPYKYRAVAKMEEGQIRAAISEIDRIIV 543 (754)
Q Consensus 515 ~~ay~~rg~~l~~lg~~~eAl~~~~rAl~ 543 (754)
+..|-.|+..+...|+|++||++..+|..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 56677799999999999999998888773
No 299
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=52.54 E-value=9.3 Score=33.94 Aligned_cols=32 Identities=6% Similarity=0.179 Sum_probs=29.2
Q ss_pred cCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhh
Q 004426 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRE 350 (754)
Q Consensus 318 i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n 350 (754)
++ .+|+..++..|..+..+.|++.|.+|+.+|
T Consensus 95 ~~-~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 95 LR-EGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 45 689999999999999999999999999765
No 300
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=51.16 E-value=5.1 Score=36.37 Aligned_cols=35 Identities=11% Similarity=-0.018 Sum_probs=28.5
Q ss_pred cCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhhh
Q 004426 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRELPS 353 (754)
Q Consensus 318 i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~~ 353 (754)
++ .+|+..++..|..+..+.|++.|.+|+.+++..
T Consensus 87 i~-~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~ 121 (135)
T 2yy9_A 87 LT-SGNRDQVLLAAKELRVPEAVELCQSFQPQTSVG 121 (135)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHCCC-----
T ss_pred CC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccC
Confidence 56 699999999999999999999999999888765
No 301
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=46.09 E-value=2.5e+02 Score=28.43 Aligned_cols=71 Identities=25% Similarity=0.334 Sum_probs=46.4
Q ss_pred HHHHHHHHHHH-----hcCCCchhHH---HHHHHHHHH-cCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhccCCCCCc-
Q 004426 657 KAAMRCLRLAR-----NHSSSEHERL---VYEGWILYD-TGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPES- 726 (754)
Q Consensus 657 eeAl~~~~~Al-----~l~P~~~ea~---~~~G~~ly~-~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~~~~~~~~- 726 (754)
+.|+..|+.|. .+.|.++-.+ .|.+.-+|. +++.++|.....+|+ -.|++--|+ |+-++
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af----------d~Ai~eld~-L~Eesy 220 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF----------DEAIAELDT-LGEESY 220 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH----------HHHHHHHHH-TC----
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH----------HHHHHhhhc-cChhhh
Confidence 46777888877 4678887432 122222333 699999999999874 456665554 45444
Q ss_pred --hhHHHHHHHHHh
Q 004426 727 --STYVIQLLEEAL 738 (754)
Q Consensus 727 --~~~~~~~~~~~~ 738 (754)
|..++|||-+=|
T Consensus 221 kDstlImqLLRDNL 234 (260)
T 1o9d_A 221 KDSTLIMQLLRDNL 234 (260)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 788999998755
No 302
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.80 E-value=48 Score=36.07 Aligned_cols=100 Identities=17% Similarity=0.130 Sum_probs=78.0
Q ss_pred ccchhhhhhhhhccccccccc-hHHHHHHHHHcCCC---ChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC--chh--
Q 004426 604 WSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPG---KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS--EHE-- 675 (754)
Q Consensus 604 ~~~A~~~~~l~~~~~~~~d~~-al~~~~~aL~l~P~---~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~--~~e-- 675 (754)
-+.++++..+++.+.+.+|++ |+..|.++.....+ ..+.++.+-.+....+++..|...+++|..+... +.+
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 345566778888888888888 88899999887644 4467888888888899999999999999766433 222
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 676 --RLVYEGWILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 676 --a~~~~G~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
...+.|.++...++|.+|-..|-.++.-
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 3357788899999999999999887653
No 303
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=44.55 E-value=18 Score=31.77 Aligned_cols=32 Identities=22% Similarity=0.108 Sum_probs=29.0
Q ss_pred cCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhh
Q 004426 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRE 350 (754)
Q Consensus 318 i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n 350 (754)
++ .+|+..++..|..++.+.|++.|.+|+.+.
T Consensus 89 ~~-~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 120 (121)
T 1buo_A 89 AK-AEDLDDLLYAAEILEIEYLEEQCLKMLETI 120 (121)
T ss_dssp CC-GGGHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 45 799999999999999999999999998754
No 304
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=43.89 E-value=2.7e+02 Score=28.20 Aligned_cols=72 Identities=25% Similarity=0.290 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHH-----hcCCCchhHH---HHHHHHHHH-cCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhccCCCCCc
Q 004426 656 QKAAMRCLRLAR-----NHSSSEHERL---VYEGWILYD-TGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPES 726 (754)
Q Consensus 656 ~eeAl~~~~~Al-----~l~P~~~ea~---~~~G~~ly~-~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~~~~~~~~ 726 (754)
.+.|+..|+.|. .+.|.++-.+ .|.+.-+|. +++.++|.....+|+ -.|++--|+ |+-++
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AF----------d~Ai~eLd~-L~ees 240 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF----------DDAIAELDT-LSEES 240 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH----------HHHHHTGGG-CCTTT
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HHHHHHhhc-cChhh
Confidence 356777887776 4778887432 122222333 699999999888863 456666665 55454
Q ss_pred ---hhHHHHHHHHHh
Q 004426 727 ---STYVIQLLEEAL 738 (754)
Q Consensus 727 ---~~~~~~~~~~~~ 738 (754)
|..++|||-+=|
T Consensus 241 ykDstlImQLLRDNL 255 (261)
T 3ubw_A 241 YKDSTLIMQLLRDNL 255 (261)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 788999998754
No 305
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=43.80 E-value=13 Score=32.30 Aligned_cols=30 Identities=7% Similarity=-0.050 Sum_probs=27.6
Q ss_pred cCCHhhHHHHHHHhhhhchHHHHHHHHHHHH
Q 004426 318 VGDIEDALILIDYGLEERATLLVASCLQVLL 348 (754)
Q Consensus 318 i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~ 348 (754)
++ .+|+..++..|..++.+.|++.|.+|+.
T Consensus 86 ~~-~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 86 LD-SWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45 6899999999999999999999999984
No 306
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=43.52 E-value=15 Score=32.20 Aligned_cols=30 Identities=7% Similarity=0.056 Sum_probs=27.6
Q ss_pred cCCHhhHHHHHHHhhhhchHHHHHHHHHHHH
Q 004426 318 VGDIEDALILIDYGLEERATLLVASCLQVLL 348 (754)
Q Consensus 318 i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~ 348 (754)
++ .+|+..++..|..+..+.|++.|.+|+.
T Consensus 88 i~-~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 88 LS-PENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 56 6899999999999999999999999984
No 307
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=42.59 E-value=9.5 Score=33.59 Aligned_cols=32 Identities=13% Similarity=0.022 Sum_probs=27.3
Q ss_pred cCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhh
Q 004426 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRE 350 (754)
Q Consensus 318 i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n 350 (754)
++ .+|+..++..|..++.+.|++.|.+|+.++
T Consensus 86 ~~-~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 86 LT-SGNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred cC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 55 689999999999999999999999998765
No 308
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=42.17 E-value=28 Score=32.52 Aligned_cols=75 Identities=11% Similarity=0.057 Sum_probs=53.4
Q ss_pred CChhHHHHHHHHhchhC---------------hhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhh
Q 004426 286 FCPGIVLELLSFANRFC---------------CEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRE 350 (754)
Q Consensus 286 i~~~~vlelL~aA~~f~---------------l~~Lk~~Ce~~L~~~i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n 350 (754)
++...+.-|+..+.... -..+..-..+|+ .++ .++++.++..|...+...|.+.|.+|+...
T Consensus 49 V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~id-~~~l~eLl~AAnyL~I~~Lld~~c~~va~~ 125 (159)
T 2ast_A 49 VNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVD-QGTLFELILAANYLDIKGLLDVTCKTVANM 125 (159)
T ss_dssp SCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHT--CSC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHH--cCC-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 56666666666665443 123344555666 378 899999999999999999999999999888
Q ss_pred hhhhcCchhhhhhc
Q 004426 351 LPSSLYNPKVMKIF 364 (754)
Q Consensus 351 ~~~vl~~e~f~~Ll 364 (754)
+.. ...+++++++
T Consensus 126 i~g-kt~eeir~~f 138 (159)
T 2ast_A 126 IKG-KTPEEIRKTF 138 (159)
T ss_dssp HSS-CCHHHHHHHT
T ss_pred HcC-CCHHHHHHHc
Confidence 765 2335555553
No 309
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=41.69 E-value=15 Score=37.99 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=30.8
Q ss_pred CChhHHHHHHHHhchhChhhHHHHHHHHHHhhcC
Q 004426 286 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 319 (754)
Q Consensus 286 i~~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~ 319 (754)
++.+++.++|.+|++|+++.|+..|.+|+.++..
T Consensus 272 ~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~ 305 (312)
T 3hqi_A 272 LSVENAAEILILADLHSADQLKTQAVDFINYHAT 305 (312)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999998765
No 310
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=40.03 E-value=21 Score=31.08 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=27.0
Q ss_pred cCCHhhHHHHHHHhhhhchHHHHHHHHHHH
Q 004426 318 VGDIEDALILIDYGLEERATLLVASCLQVL 347 (754)
Q Consensus 318 i~~~~n~l~il~~A~~~~~~~L~~~cl~~i 347 (754)
++ .+|+..++..|..++.+.|++.|.+|+
T Consensus 91 ~~-~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 91 VS-TANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp CC-GGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 45 799999999999999999999999987
No 311
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.71 E-value=64 Score=36.21 Aligned_cols=68 Identities=13% Similarity=0.029 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC---CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccccc
Q 004426 519 KYRAVAKMEEGQIRAAISEIDRIIVFKL---SVD---CLELRAWLFIAADDYESALRDTLALLALESNYMMFHG 586 (754)
Q Consensus 519 ~~rg~~l~~lg~~~eAl~~~~rAl~l~p---~~~---~~~~ra~~~~~lgd~~~Al~d~~~al~l~P~~~~~~~ 586 (754)
+-+--.|...+.|+.|..-.+|+.-... +.+ .+|..|.++...++|.+|...+..|++..|....+.|
T Consensus 235 nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~g 308 (523)
T 4b4t_S 235 NLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLG 308 (523)
T ss_dssp HHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSH
T ss_pred HHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhh
Confidence 3445567777888999998888862111 122 2355788899999999999999999998887644333
No 312
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=39.22 E-value=66 Score=34.34 Aligned_cols=44 Identities=14% Similarity=0.018 Sum_probs=32.7
Q ss_pred HHHHHHHHHh-----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004426 500 KIVDLNYASE-----LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV 543 (754)
Q Consensus 500 Al~dl~kAi~-----LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~ 543 (754)
+++-|.+||. ++-.+.++|.++|..+.+.+++.||+..+..|-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 3444444443 4566789999999999999999999988877654
No 313
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=39.06 E-value=64 Score=35.03 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=28.8
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004426 510 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV 543 (754)
Q Consensus 510 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~rAl~ 543 (754)
++-.+.++|.++|..+.+.+++.||+..+-.|-.
T Consensus 313 Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 313 YRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp STTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 5567789999999999999999999998877654
No 314
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=39.04 E-value=61 Score=29.55 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhcCCCCC--CChhHHHHHHHHhchhC---------------hhhHHHHHHHHHHhhcCCHhhHHHHHHHh
Q 004426 269 EGLRAVEVYTRTSRVDL--FCPGIVLELLSFANRFC---------------CEEMKSACDAHLASLVGDIEDALILIDYG 331 (754)
Q Consensus 269 ~~f~~lL~ylYTg~l~~--i~~~~vlelL~aA~~f~---------------l~~Lk~~Ce~~L~~~i~~~~n~l~il~~A 331 (754)
..++.+++-.=.+.+.. ++...+..++..+.+.. -..+...-.+|+ .++ .++++.++..|
T Consensus 25 ~~ik~ml~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~vd-~~~l~eLi~AA 101 (141)
T 1fs1_B 25 VTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVD-QGTLFELILAA 101 (141)
T ss_dssp HHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHT--CSC-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHH--hCC-HHHHHHHHHHH
Confidence 45566665421222321 56677777777766544 123344445556 378 89999999999
Q ss_pred hhhchHHHHHHHHHHHHhhhhhhcCchhhhhhc
Q 004426 332 LEERATLLVASCLQVLLRELPSSLYNPKVMKIF 364 (754)
Q Consensus 332 ~~~~~~~L~~~cl~~i~~n~~~vl~~e~f~~Ll 364 (754)
...+...|.+.|.+++...+.. -..++.++++
T Consensus 102 nyL~I~~Lldl~c~~vA~~ikg-kt~eeiR~~f 133 (141)
T 1fs1_B 102 NYLDIKGLLDVTCKTVANMIKG-KTPEEIRKTF 133 (141)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTT-CCHHHHHHHT
T ss_pred HHHhhhHHHHHHHHHHHHHHcC-CCHHHHHHHc
Confidence 9999999999999999988765 2334454443
No 315
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=38.51 E-value=3.2e+02 Score=27.46 Aligned_cols=72 Identities=25% Similarity=0.300 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHh-----cCCCchhHH---HHHHHHHHH-cCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhccCCCCCc
Q 004426 656 QKAAMRCLRLARN-----HSSSEHERL---VYEGWILYD-TGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPES 726 (754)
Q Consensus 656 ~eeAl~~~~~Al~-----l~P~~~ea~---~~~G~~ly~-~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~~~~~~~~ 726 (754)
.+.|+..|+.|.. +.|.++-.+ .|.+.-+|. +++.++|.....+|+ -.|++--|+ |+-++
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Af----------d~Ai~eld~-l~ees 215 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAF----------DDAIAELDT-LNEDS 215 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH----------HHHHHTGGG-CCTTT
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HHHHHHhhc-CCccc
Confidence 3567778877764 778887432 122222333 699999999888863 456665565 55454
Q ss_pred ---hhHHHHHHHHHh
Q 004426 727 ---STYVIQLLEEAL 738 (754)
Q Consensus 727 ---~~~~~~~~~~~~ 738 (754)
|..++|||-+=|
T Consensus 216 ykDstlImqLLRDNL 230 (248)
T 3uzd_A 216 YKDSTLIMQLLRDNL 230 (248)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 788999998755
No 316
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=37.27 E-value=42 Score=27.39 Aligned_cols=32 Identities=6% Similarity=0.028 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHH
Q 004426 519 KYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC 550 (754)
Q Consensus 519 ~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~ 550 (754)
..+|..+...|++++|+..|-+||..-|+|..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 45899999999999999999999999998653
No 317
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=37.13 E-value=2.5e+02 Score=26.03 Aligned_cols=73 Identities=16% Similarity=0.083 Sum_probs=33.1
Q ss_pred cchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004426 623 IGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 701 (754)
Q Consensus 623 ~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai 701 (754)
.+++..+.+++ +-.++.....-..+|.++|..+ ++..+...+. +| +......-.+++...|. ++++....+.+
T Consensus 111 ~~~~~~L~~~l--~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~-d~-~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 111 ERAVEPLIKAL--KDEDWFVRIAAAFALGEIGDER-AVEPLIKALK-DE-DGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp GGGHHHHHHHT--TCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT-CS-SHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc-CC-CHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 33455555544 2233444555555555555543 5555555442 22 33444444444444443 34444444443
No 318
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.99 E-value=1.3e+02 Score=28.36 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=50.3
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hhHHHHHHHHH--------HHcCCHHHHHHHHHHHHhc
Q 004426 644 FRQSLLLLRLNCQKAAMRCLRLARNHSSSE-HERLVYEGWIL--------YDTGHREEALSRAEKSISI 703 (754)
Q Consensus 644 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-~ea~~~~G~~l--------y~~G~~eeAl~~~e~Ai~l 703 (754)
+..|..+...|++=+|-+.++.+..-.+.. .+..++.|+|. +..|+...|...+++|+..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 557778888899999999999999887664 35667777777 6679999999999999883
No 319
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=31.65 E-value=51 Score=27.42 Aligned_cols=33 Identities=6% Similarity=-0.078 Sum_probs=21.7
Q ss_pred HHHHHHHhhhhhhHhhccchHHHHHHHHHHhhh
Q 004426 416 WQRMLALHQLGCVMFEREEYKDACYYFEAAADA 448 (754)
Q Consensus 416 ~qka~Al~~LG~v~~~~g~~~eA~~~f~~AL~~ 448 (754)
.++++.+...++..-..|+|++|+.+|..||+.
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344455555666666777888888887776663
No 320
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=31.29 E-value=37 Score=21.14 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=18.6
Q ss_pred HHHHHHhhhhchHHHHHHHHHH
Q 004426 325 LILIDYGLEERATLLVASCLQV 346 (754)
Q Consensus 325 l~il~~A~~~~~~~L~~~cl~~ 346 (754)
+.++-+|+.|+.++|...|+.-
T Consensus 2 ckvmcyaqrhsspellrrcldn 23 (26)
T 2plx_B 2 CKVMCYAQRHSSPELLRRCLDN 23 (26)
T ss_dssp HHHHHHHBCCCCHHHHHHHHHH
T ss_pred ceEEeehhhcCCHHHHHHHHhc
Confidence 4577899999999999999864
No 321
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=31.12 E-value=1.5e+02 Score=29.03 Aligned_cols=99 Identities=16% Similarity=0.086 Sum_probs=63.4
Q ss_pred cCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH--HHcCCHHHHHHHHHHHHhcC--C-----
Q 004426 635 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL--YDTGHREEALSRAEKSISIE--R----- 705 (754)
Q Consensus 635 l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~l--y~~G~~eeAl~~~e~Ai~l~--~----- 705 (754)
.||.....|...+... ..+...++...|....+..=-..-|++|.+|+. -..|++.+|-+.|++.|+-+ |
T Consensus 75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~ 153 (202)
T 3esl_A 75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLL 153 (202)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 4555555665555544 123356789999999888888888888888875 45699999999999999864 3
Q ss_pred -ChHHHHHHHHHhhccCC--CCCchhHHHHHHHHH
Q 004426 706 -TFEAFFLKAYILADTNL--DPESSTYVIQLLEEA 737 (754)
Q Consensus 706 -~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 737 (754)
.+..|-.+ +..+++ |-.+-..+-..++..
T Consensus 154 ~~~~~F~~R---~~~~~~~~~~~~~~~~~~~~~~~ 185 (202)
T 3esl_A 154 RSLSNYEDR---LREMNIVENQNSVPDSRERLKGR 185 (202)
T ss_dssp HHHHHHHHH---HHHTTCCCC----CHHHHHHHHH
T ss_pred HHHHHHHHH---HHhcCCCCCCCccccHHHHhccc
Confidence 22233333 455666 555444444555555
No 322
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=29.18 E-value=1.5e+02 Score=28.20 Aligned_cols=67 Identities=10% Similarity=-0.060 Sum_probs=47.1
Q ss_pred CChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 004426 638 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFL 712 (754)
Q Consensus 638 ~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~ 712 (754)
++..-|.++|..=+..|+++=|.++|+++-. +..+..++.-+|+.++=....+.|..-.-...||..
T Consensus 32 ~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~ 98 (177)
T 3mkq_B 32 NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLN 98 (177)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHH
Confidence 5677899999999999999999998887642 245556677788887766666666555444445543
No 323
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=27.35 E-value=21 Score=32.55 Aligned_cols=29 Identities=14% Similarity=0.028 Sum_probs=26.7
Q ss_pred cCCHhhHHHHHHHhhhhchHHHHHHHHHHH
Q 004426 318 VGDIEDALILIDYGLEERATLLVASCLQVL 347 (754)
Q Consensus 318 i~~~~n~l~il~~A~~~~~~~L~~~cl~~i 347 (754)
++ .+|+..++..|..++.+.|++.|.+||
T Consensus 115 i~-~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 115 LN-EDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred CC-HHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 46 699999999999999999999999886
No 324
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=27.11 E-value=36 Score=29.98 Aligned_cols=31 Identities=10% Similarity=-0.020 Sum_probs=27.2
Q ss_pred cCCHhhHHHHHHHhhhhchHHHHHHHHHHHHh
Q 004426 318 VGDIEDALILIDYGLEERATLLVASCLQVLLR 349 (754)
Q Consensus 318 i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~ 349 (754)
++ .+|+..++..|..+..+.|++.|.+++..
T Consensus 87 i~-~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 87 LQ-PGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp EC-GGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 56 79999999999999999999999998654
No 325
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=27.10 E-value=22 Score=31.92 Aligned_cols=34 Identities=18% Similarity=-0.037 Sum_probs=26.0
Q ss_pred cCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhhhh
Q 004426 318 VGDIEDALILIDYGLEERATLLVASCLQVLLRELP 352 (754)
Q Consensus 318 i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n~~ 352 (754)
++ .+|+..++..|..+..+.|++.|.+|+.+++.
T Consensus 91 ~~-~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~ 124 (145)
T 4eoz_A 91 NL-DKMADDLLAAADKYALERLKVMCEDALCSNLS 124 (145)
T ss_dssp TG-GGTHHHHHHHHHHTTCHHHHHHHHCC------
T ss_pred Cc-HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence 44 68999999999999999999999999987653
No 326
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=26.72 E-value=2.3e+02 Score=30.87 Aligned_cols=120 Identities=14% Similarity=0.093 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHhhhhccccchhhhhhhhhccccccccchHHHHHHHHH-----c
Q 004426 561 ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI-----N 635 (754)
Q Consensus 561 lgd~~~Al~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~-----l 635 (754)
+.+|--|+-.+-..-++.|.. ++..++..|++||. -
T Consensus 258 l~~YPmALgnLgDLEei~pt~---------------------------------------grp~~~~Lf~~AI~~ar~~Y 298 (489)
T 4gq4_A 258 LERYPMALGNLADLEELEPTP---------------------------------------GRPDPLTLYHKGIASAKTYY 298 (489)
T ss_dssp TTTCHHHHHHHHHHHHHSCCT---------------------------------------TSCCHHHHHHHHHHHHHHHS
T ss_pred hhhcchhhhcccCHhhcCCCC---------------------------------------CCCCHHHHHHHHHHHHHHhc
Q ss_pred CCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004426 636 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 715 (754)
Q Consensus 636 ~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~ 715 (754)
.-.+..-|..+|-.+.+.+++.+|++.+-.| ....-.|.-++-|| +.|++-+.|.-...-..+|+-
T Consensus 299 ~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~a------------a~Vi~~YnY~reDe--EiYke~~eIanelip~~lk~~ 364 (489)
T 4gq4_A 299 RDEHIYPYMYLAGYHCRNRNVREALQAWADT------------ATVIQDYNYCREDE--EIYKEFFEVANDVIPNLLKEA 364 (489)
T ss_dssp TTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHHTTSCCCTTCH--HHHHHHHHHHHTHHHHHHHHH
T ss_pred ccCcccceeecchHHHHhhhHHHHHHHhhhh------------hhhhhhcccccchH--HHHHHHHHHHHHhhhHHHHHh
Q ss_pred Hh---hcc----CCCCCchhHHHHH
Q 004426 716 IL---ADT----NLDPESSTYVIQL 733 (754)
Q Consensus 716 ~~---~~~----~~~~~~~~~~~~~ 733 (754)
+- ..+ --||+|..+++.+
T Consensus 365 ~~~~~~~~~~~~l~dp~c~a~lL~f 389 (489)
T 4gq4_A 365 ASLLEAGSQGSALQDPECFAHLLRF 389 (489)
T ss_dssp HHHHHTTCSSCGGGCHHHHHHHHHH
T ss_pred hhcccccccccCCCCcchhhhhccc
No 327
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=25.87 E-value=68 Score=27.51 Aligned_cols=32 Identities=6% Similarity=0.028 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHH
Q 004426 519 KYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC 550 (754)
Q Consensus 519 ~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~~~ 550 (754)
..+|..+...|++++|+..|-+||..-|+|..
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 45899999999999999999999999998754
No 328
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=25.84 E-value=2.4e+02 Score=26.19 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 004426 657 KAAMRCLRLARNHSSSEHERLVYEGWIL--YDTGHREEALSRAEKSISIERTFEAFFLKA 714 (754)
Q Consensus 657 eeAl~~~~~Al~l~P~~~ea~~~~G~~l--y~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~ 714 (754)
.++...|....+..=-..-|++|.+|+. -..|++++|-+.|++.|+-+--...-..++
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~ 141 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQ 141 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 4488888888888877778888888874 456999999999999998754433333333
No 329
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.78 E-value=3.6e+02 Score=25.21 Aligned_cols=58 Identities=9% Similarity=-0.046 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCH--HHHHHHH--------HHHHHcCCHHHHHHHHHHHHh
Q 004426 519 KYRAVAKMEEGQIRAAISEIDRIIVFKLSV--DCLELRA--------WLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 519 ~~rg~~l~~lg~~~eAl~~~~rAl~l~p~~--~~~~~ra--------~~~~~lgd~~~Al~d~~~al~ 576 (754)
+..|..+.+.|+|=+|-+.+..+..-.+.+ +.-..+| ..+.+.|+...|.+.+++++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456778888899999999999999776543 3222222 346889999999999999988
No 330
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=25.59 E-value=33 Score=34.31 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=30.3
Q ss_pred CChhHHHHHHHHhchhChhhHHHHHHHHHHhhcC
Q 004426 286 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 319 (754)
Q Consensus 286 i~~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~ 319 (754)
++.+|++.++.+|+.|+++.|+..|.+|+.++..
T Consensus 131 l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~ 164 (256)
T 3hve_A 131 IAAENCIGIRDFALHYCLHHVHYLATEYLETHFR 164 (256)
T ss_dssp CCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999976544
No 331
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=25.29 E-value=73 Score=26.45 Aligned_cols=25 Identities=8% Similarity=-0.057 Sum_probs=14.4
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 644 FRQSLLLLRLNCQKAAMRCLRLARN 668 (754)
Q Consensus 644 ~~~g~~L~~lg~~eeAl~~~~~Al~ 668 (754)
..+|.-..+.|++++|+..|..|++
T Consensus 23 v~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 23 AINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444455666666666666665554
No 332
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=24.95 E-value=43 Score=33.95 Aligned_cols=66 Identities=8% Similarity=0.024 Sum_probs=44.2
Q ss_pred CChhHHHHHHHHhchhChhhHHHHHHHHHHhhcCC-----------HhhHHHHHHHhhh--hchHHHHHHHHHHHHhhh
Q 004426 286 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVGD-----------IEDALILIDYGLE--ERATLLVASCLQVLLREL 351 (754)
Q Consensus 286 i~~~~vlelL~aA~~f~l~~Lk~~Ce~~L~~~i~~-----------~~n~l~il~~A~~--~~~~~L~~~cl~~i~~n~ 351 (754)
++.+|++.++.+|+.|+++.|+..|.+|+.++... .+....++.--.. .+-..+.+++..|+..+.
T Consensus 139 l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d~L~v~sE~~vf~av~~W~~~~~ 217 (279)
T 3i3n_A 139 LHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNA 217 (279)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGSCHHHHHHHHTCSSCCCSCHHHHHHHHHHHHHTTH
T ss_pred CCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcCCHHHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCH
Confidence 67889999999999999999999999999765420 2333333332111 123456666677766543
No 333
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=23.62 E-value=6.2e+02 Score=26.11 Aligned_cols=73 Identities=15% Similarity=0.004 Sum_probs=49.0
Q ss_pred HHHHHHHHHc-------CCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHc---CCHHHHHH
Q 004426 626 LAVINQMLIN-------DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT---GHREEALS 695 (754)
Q Consensus 626 l~~~~~aL~l-------~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~---G~~eeAl~ 695 (754)
...+++||.- .=+++++|...|..+.+-|++.+|...+- .-+.++++.+...=+-.+.. |.-.|+=-
T Consensus 113 ~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i---~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dl 189 (312)
T 2wpv_A 113 KDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM---LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAE 189 (312)
T ss_dssp HHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH---TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH---hCCCccHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 3456666632 23788999999999999999999888865 22223566666555555666 77666655
Q ss_pred HHHHHH
Q 004426 696 RAEKSI 701 (754)
Q Consensus 696 ~~e~Ai 701 (754)
..-||+
T Consensus 190 f~~RaV 195 (312)
T 2wpv_A 190 FFSRLV 195 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 556664
No 334
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=23.61 E-value=87 Score=25.89 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=17.8
Q ss_pred HHHHHhhhhhhHhhccchHHHHHHHHHHhh
Q 004426 418 RMLALHQLGCVMFEREEYKDACYYFEAAAD 447 (754)
Q Consensus 418 ka~Al~~LG~v~~~~g~~~eA~~~f~~AL~ 447 (754)
++..+...++..-..|+|++|+.+|..||+
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444455555566677777777766555
No 335
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=23.15 E-value=84 Score=25.97 Aligned_cols=25 Identities=8% Similarity=-0.105 Sum_probs=14.9
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 644 FRQSLLLLRLNCQKAAMRCLRLARN 668 (754)
Q Consensus 644 ~~~g~~L~~lg~~eeAl~~~~~Al~ 668 (754)
..+|.-..+.|++++|+..|..|++
T Consensus 15 v~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 15 AILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444555666666666666666554
No 336
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=22.95 E-value=5.6e+02 Score=25.36 Aligned_cols=72 Identities=25% Similarity=0.290 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHH-----hcCCCchhHH---HHHHHHHHH-cCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhccCCCCCc
Q 004426 656 QKAAMRCLRLAR-----NHSSSEHERL---VYEGWILYD-TGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPES 726 (754)
Q Consensus 656 ~eeAl~~~~~Al-----~l~P~~~ea~---~~~G~~ly~-~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~~~~~~~~ 726 (754)
.+.|+..|+.|+ .+.|.++-.+ .|.+.-+|. +|+.++|.....+|+ -.|++--|+ |+-++
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~af----------d~Ai~eld~-l~ees 214 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF----------DDAIAELDT-LSEES 214 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH----------HHHHHTGGG-CCTTT
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HHHHHhhhc-cChhh
Confidence 346777788777 4678887432 122222333 799999999998874 466666664 44433
Q ss_pred ---hhHHHHHHHHHh
Q 004426 727 ---STYVIQLLEEAL 738 (754)
Q Consensus 727 ---~~~~~~~~~~~~ 738 (754)
|..++|||-+=|
T Consensus 215 ykDstlImqLLrDNL 229 (234)
T 2br9_A 215 YKDSTLIMQLLRDNL 229 (234)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 577889987744
No 337
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.87 E-value=7.5e+02 Score=29.58 Aligned_cols=115 Identities=14% Similarity=0.032 Sum_probs=72.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccccccchhhhHHHHHHh
Q 004426 521 RAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLA-LESNYMMFHGRVSGDHLVKLLN 598 (754)
Q Consensus 521 rg~~l~~lg~~~eAl~~~~rAl~l~p-~~~~~~~ra~~~~~lgd~~~Al~d~~~al~-l~P~~~~~~~~~~~~~~~~~l~ 598 (754)
+..-++..|.++-|.+ .+..-| ++..-|.+|.+++..|++++|...|++|-. +.++... ........+.+
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~---~~~~~~~~~ll- 887 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ---FAVLREFQEIA- 887 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCS---CGGGHHHHHHH-
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCccc---ccchhhhhhcc-
Confidence 5667777888875532 445555 455558899999999999999999999863 2221100 00000000000
Q ss_pred hhhccccchhhhhhhhhccccccccchHHHHHHHHHcCCCChhHHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 004426 599 HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE 675 (754)
Q Consensus 599 ~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~~aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e 675 (754)
-..+.......+|.....++...|.++-+++..+.|++....+-+
T Consensus 888 --------------------------------~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 888 --------------------------------EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp --------------------------------HHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred --------------------------------CcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 001111122347888888899999999999999999986544433
No 338
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=22.20 E-value=87 Score=26.15 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004426 674 HERLVYEGWILYDTGHREEALSRAEKSISI 703 (754)
Q Consensus 674 ~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l 703 (754)
+--+...+.-.-..|+|++|+..|.+||..
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
No 339
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=21.33 E-value=13 Score=33.18 Aligned_cols=33 Identities=9% Similarity=0.047 Sum_probs=23.0
Q ss_pred hcCCHhhHHHHHHHhhhhchHHHHHHHHHHHHhh
Q 004426 317 LVGDIEDALILIDYGLEERATLLVASCLQVLLRE 350 (754)
Q Consensus 317 ~i~~~~n~l~il~~A~~~~~~~L~~~cl~~i~~n 350 (754)
.++ .+|+..++..|..+..+.|++.|.+|+.+.
T Consensus 95 ~i~-~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 95 SMN-VGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp ECC-TTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred ccC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 356 799999999999999999999999999765
No 340
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.86 E-value=6.7e+02 Score=26.98 Aligned_cols=59 Identities=24% Similarity=0.136 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----cCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004426 518 YKYRAVAKMEEGQIRAAISEIDRIIV----FKLS---VDCLELRAWLFIAADDYESALRDTLALLA 576 (754)
Q Consensus 518 y~~rg~~l~~lg~~~eAl~~~~rAl~----l~p~---~~~~~~ra~~~~~lgd~~~Al~d~~~al~ 576 (754)
...++.++.+.|++.+|...+..... .... .+.+.....++...+|+..|...++++..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45789999999999999998888753 1221 23334455689999999999999999853
No 341
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=20.73 E-value=7.1e+02 Score=30.03 Aligned_cols=95 Identities=14% Similarity=0.052 Sum_probs=41.1
Q ss_pred HHHcCCHHHHHH-HHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHhhccCCCCCc-h
Q 004426 650 LLRLNCQKAAMR-CLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPES-S 727 (754)
Q Consensus 650 L~~lg~~eeAl~-~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~~e~Ai~l~~~~~a~~~~~~~~~~~~~~~~~-~ 727 (754)
+...|... |++ .+..+..-..++....-..|+.+...|+-+.+.+..+. +.-.-+...=+.-++||+= ++++. .
T Consensus 570 yaGTGn~~-aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~-L~~~~d~~VR~gAalALGl--i~aGn~~ 645 (963)
T 4ady_A 570 YAGTGNNS-AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQL-LSKSHNAHVRCGTAFALGI--ACAGKGL 645 (963)
T ss_dssp TTTSCCHH-HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTT-GGGCSCHHHHHHHHHHHHH--HTSSSCC
T ss_pred hcCCCCHH-HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHH--hccCCCc
Confidence 33566665 333 55555544434444444444444444543322221111 1111122222333334433 23332 2
Q ss_pred hHHHHHHHHHhcCCCCCcccc
Q 004426 728 TYVIQLLEEALRCPSDGLRKG 748 (754)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~ 748 (754)
..||++|+..++=+.+..|.|
T Consensus 646 ~~aid~L~~L~~D~d~~Vrq~ 666 (963)
T 4ady_A 646 QSAIDVLDPLTKDPVDFVRQA 666 (963)
T ss_dssp HHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHH
Confidence 567777777766555555544
No 342
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=20.36 E-value=7.2e+02 Score=25.62 Aligned_cols=56 Identities=7% Similarity=-0.061 Sum_probs=33.0
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHH----h---cCCCchhHHHHHHHHH-HHcCCHHHHHHHHHHH
Q 004426 645 RQSLLLLRLNCQKAAMRCLRLAR----N---HSSSEHERLVYEGWIL-YDTGHREEALSRAEKS 700 (754)
Q Consensus 645 ~~g~~L~~lg~~eeAl~~~~~Al----~---l~P~~~ea~~~~G~~l-y~~G~~eeAl~~~e~A 700 (754)
..|.-+.-+|..+.+....+-.. . -.|...+.+..|+.+- +.+|+..-|...++.-
T Consensus 151 ~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f 214 (312)
T 2wpv_A 151 YEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIF 214 (312)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34666666777443333332222 2 2456677778888754 4678888777766543
Done!