Query 004427
Match_columns 754
No_of_seqs 386 out of 2238
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 00:54:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3peh_A Endoplasmin homolog; st 99.9 1.9E-23 6.4E-28 219.6 9.6 170 236-416 27-228 (281)
2 3nmq_A Heat shock protein HSP 99.9 2.3E-23 7.8E-28 214.7 9.5 172 234-416 18-219 (239)
3 3ied_A Heat shock protein; HSP 99.9 7.9E-23 2.7E-27 211.8 9.1 171 234-416 26-269 (272)
4 1y4s_A Chaperone protein HTPG; 99.9 4.8E-21 1.7E-25 218.3 22.1 172 235-415 7-209 (559)
5 1qy5_A Endoplasmin; GRP94, NEC 99.9 2.8E-22 9.4E-27 210.2 7.0 168 237-416 10-213 (269)
6 3t0h_A Heat shock protein HSP 99.8 5.1E-22 1.7E-26 203.7 7.7 173 233-416 10-212 (228)
7 2gqp_A Endoplasmin; GRP94, HSP 99.8 1.5E-21 5.2E-26 201.0 8.4 170 235-416 12-217 (236)
8 3o0i_A HSP90AA1 protein; HSP90 99.8 1.6E-21 5.4E-26 202.9 8.3 172 234-416 39-240 (256)
9 1yc1_A HSP 86, heat shock prot 99.8 5.8E-21 2E-25 199.8 9.8 164 241-415 55-247 (264)
10 2wer_A ATP-dependent molecular 99.8 9.4E-21 3.2E-25 192.6 10.1 168 237-415 8-206 (220)
11 2cg9_A ATP-dependent molecular 99.8 2.7E-20 9.4E-25 215.5 12.8 170 236-416 7-207 (677)
12 2ior_A Chaperone protein HTPG; 99.8 4.4E-20 1.5E-24 189.9 8.2 170 237-415 29-229 (235)
13 2ioq_A Chaperone protein HTPG; 99.8 3.4E-20 1.2E-24 213.6 7.0 170 237-415 9-209 (624)
14 2o1u_A Endoplasmin; GRP94, HSP 99.8 4.2E-20 1.4E-24 213.8 6.7 167 237-415 27-229 (666)
15 2e61_A Zinc finger CW-type PWW 99.7 4.2E-17 1.4E-21 138.0 5.1 55 637-691 9-67 (69)
16 1b63_A MUTL; DNA mismatch repa 99.6 1.1E-14 3.6E-19 156.8 19.2 110 234-353 3-119 (333)
17 2l7p_A Histone-lysine N-methyl 99.6 1.6E-16 5.5E-21 143.0 0.2 59 637-695 19-80 (100)
18 3h4l_A DNA mismatch repair pro 99.3 1.1E-12 3.6E-17 143.2 8.5 139 236-387 6-150 (367)
19 1h7s_A PMS1 protein homolog 2; 99.3 4.2E-12 1.4E-16 138.4 9.4 139 236-387 15-160 (365)
20 3na3_A DNA mismatch repair pro 99.2 8.2E-12 2.8E-16 135.3 8.9 139 236-387 9-154 (348)
21 1ei1_A DNA gyrase B, GYRB; ATP 99.0 4.5E-09 1.5E-13 115.6 16.4 89 254-352 34-137 (391)
22 3cwv_A DNA gyrase, B subunit, 98.9 2.2E-08 7.4E-13 109.4 17.3 88 254-353 30-121 (369)
23 1kij_A DNA gyrase subunit B; t 98.9 3.4E-08 1.2E-12 108.5 17.5 89 254-352 32-135 (390)
24 3fv5_A DNA topoisomerase 4 sub 98.8 9.1E-09 3.1E-13 103.5 9.7 120 255-388 18-155 (201)
25 1s16_A Topoisomerase IV subuni 98.8 3.5E-07 1.2E-11 100.5 21.9 119 256-388 33-169 (390)
26 1zxm_A TOPO IIA ATPase, DNA to 98.5 1.5E-07 5E-12 103.9 9.7 89 254-351 52-156 (400)
27 4duh_A DNA gyrase subunit B; s 98.5 2.4E-07 8.2E-12 94.6 8.8 119 254-388 35-171 (220)
28 4emv_A DNA topoisomerase IV, B 98.4 5.9E-07 2E-11 92.0 9.8 140 234-389 22-179 (226)
29 1mu5_A Type II DNA topoisomera 98.4 8.9E-07 3E-11 99.6 10.4 96 254-353 32-137 (471)
30 2zbk_B Type 2 DNA topoisomeras 98.3 8.8E-07 3E-11 100.9 9.1 96 254-353 31-136 (530)
31 3lnu_A Topoisomerase IV subuni 98.1 3E-06 1E-10 93.7 8.0 120 255-388 51-188 (408)
32 2q2e_B Type 2 DNA topoisomeras 98.1 2.6E-06 8.8E-11 98.7 6.1 95 254-353 37-141 (621)
33 3ttz_A DNA gyrase subunit B; p 97.8 4.3E-05 1.5E-09 76.7 9.3 146 254-437 31-183 (198)
34 1pvg_A DNA topoisomerase II; G 97.8 2.9E-05 1E-09 86.1 7.1 121 255-388 65-206 (418)
35 1id0_A PHOQ histidine kinase; 97.7 5.5E-05 1.9E-09 69.4 7.4 85 255-350 45-132 (152)
36 1bxd_A ENVZ(290-450), protein 97.6 9.6E-05 3.3E-09 68.9 7.4 87 255-350 48-137 (161)
37 2c2a_A Sensor histidine kinase 97.4 0.00014 4.9E-09 72.9 6.5 90 255-351 139-236 (258)
38 1ysr_A Sensor-type histidine k 97.4 0.00024 8.1E-09 65.3 7.3 86 255-350 47-136 (150)
39 1i58_A Chemotaxis protein CHEA 97.3 8.4E-05 2.9E-09 71.3 3.1 47 255-307 48-108 (189)
40 4ew8_A Sensor protein DIVL; si 97.3 0.00029 1E-08 70.5 7.2 83 255-350 156-243 (268)
41 2q8g_A [pyruvate dehydrogenase 97.3 0.00019 6.5E-09 78.2 6.0 90 255-350 244-350 (407)
42 2e0a_A Pyruvate dehydrogenase 97.3 0.00022 7.5E-09 77.4 6.1 90 255-350 231-337 (394)
43 1th8_A Anti-sigma F factor; SP 97.3 0.00031 1.1E-08 64.7 5.9 82 254-349 39-125 (145)
44 3d36_A Sporulation kinase B; G 97.3 0.00039 1.3E-08 68.2 7.0 85 255-351 124-213 (244)
45 1y8o_A [pyruvate dehydrogenase 97.2 0.00022 7.5E-09 78.2 5.4 90 255-350 254-361 (419)
46 3a0y_A Sensor protein; ATP-LID 97.2 0.00022 7.6E-09 65.1 4.5 82 255-349 48-135 (152)
47 1gkz_A [3-methyl-2-oxobutanoat 97.2 0.00015 5.2E-09 78.3 3.8 90 255-350 239-360 (388)
48 2btz_A Pyruvate dehydrogenase 97.2 0.00024 8.3E-09 76.9 5.1 90 255-350 232-337 (394)
49 3jz3_A Sensor protein QSEC; he 97.2 0.0002 6.9E-09 69.2 4.0 83 255-349 118-203 (222)
50 3sl2_A Sensor histidine kinase 97.1 0.00035 1.2E-08 66.2 5.0 92 255-351 44-140 (177)
51 3zxo_A Redox sensor histidine 97.1 0.00075 2.6E-08 60.3 6.2 69 254-351 43-115 (129)
52 1r62_A Nitrogen regulation pro 97.0 0.00017 5.9E-09 66.2 1.2 89 255-350 49-147 (160)
53 3ehg_A Sensor kinase (YOCF pro 97.0 0.00034 1.2E-08 63.3 3.1 71 255-350 41-115 (128)
54 1b3q_A Protein (chemotaxis pro 97.0 0.00076 2.6E-08 73.1 6.2 88 256-351 108-236 (379)
55 3ehh_A Sensor kinase (YOCF pro 96.8 0.00081 2.8E-08 65.3 4.5 71 255-350 131-205 (218)
56 3a0r_A Sensor protein; four he 96.6 0.0011 3.9E-08 68.4 4.0 82 255-349 245-332 (349)
57 3zxq_A Hypoxia sensor histidin 95.9 0.0057 1.9E-07 54.2 4.1 46 254-306 39-85 (124)
58 4gfh_A DNA topoisomerase 2; to 95.7 0.03 1E-06 69.3 10.9 86 255-349 60-161 (1177)
59 4gut_A Lysine-specific histone 93.2 0.012 4.1E-07 69.9 -1.0 46 644-689 91-146 (776)
60 4fpp_A Phosphotransferase; fou 92.9 0.1 3.5E-06 52.6 5.4 82 255-349 147-235 (247)
61 3o70_A PHD finger protein 13; 92.5 0.063 2.2E-06 44.9 2.7 32 643-674 30-62 (68)
62 3o7a_A PHD finger protein 13 v 91.6 0.066 2.3E-06 42.3 1.8 32 643-674 15-47 (52)
63 1we9_A PHD finger family prote 90.9 0.12 4.2E-06 42.1 2.7 36 640-675 16-54 (64)
64 1wee_A PHD finger family prote 90.0 0.2 6.8E-06 42.0 3.3 31 644-674 29-61 (72)
65 2lv9_A Histone-lysine N-methyl 89.8 0.16 5.3E-06 45.4 2.6 33 643-675 39-72 (98)
66 3ke6_A Protein RV1364C/MT1410; 88.2 0.36 1.2E-05 52.5 4.7 47 254-305 297-348 (399)
67 2kgg_A Histone demethylase jar 83.9 0.18 6.1E-06 39.8 -0.4 35 640-674 12-49 (52)
68 3kqi_A GRC5, PHD finger protei 81.4 0.36 1.2E-05 40.8 0.5 35 641-675 20-57 (75)
69 1wep_A PHF8; structural genomi 80.5 0.2 6.8E-06 42.8 -1.4 33 642-674 23-58 (79)
70 2rsd_A E3 SUMO-protein ligase 77.3 1.3 4.3E-05 36.8 2.6 32 643-674 21-60 (68)
71 1ixm_A SPO0B, protein (sporula 76.2 1.3 4.3E-05 44.0 2.7 36 271-312 130-167 (192)
72 2k16_A Transcription initiatio 74.7 0.79 2.7E-05 38.4 0.7 32 643-674 30-63 (75)
73 1wew_A DNA-binding family prot 74.5 0.88 3E-05 38.7 0.9 33 642-674 26-67 (78)
74 2ri7_A Nucleosome-remodeling f 74.4 0.54 1.9E-05 45.3 -0.5 34 642-675 19-55 (174)
75 2vpb_A Hpygo1, pygopus homolog 70.9 1.4 4.8E-05 36.5 1.3 19 640-658 18-37 (65)
76 2xb1_A Pygopus homolog 2, B-ce 62.3 1.6 5.6E-05 39.3 0.1 35 640-674 13-56 (105)
77 1weu_A Inhibitor of growth fam 59.6 3.9 0.00013 36.1 2.0 30 644-674 47-80 (91)
78 1wen_A Inhibitor of growth fam 56.1 5.6 0.00019 33.3 2.3 30 644-674 27-60 (71)
79 1wem_A Death associated transc 55.4 3.4 0.00012 34.6 0.9 32 643-674 27-65 (76)
80 2g6q_A Inhibitor of growth pro 49.9 5.6 0.00019 32.5 1.3 30 644-674 22-55 (62)
81 3c6w_A P28ING5, inhibitor of g 49.3 5.8 0.0002 32.0 1.3 30 644-674 20-53 (59)
82 3pur_A Lysine-specific demethy 47.2 6.9 0.00024 44.5 1.9 36 640-675 52-90 (528)
83 3kv5_D JMJC domain-containing 44.1 3.3 0.00011 46.8 -1.4 35 641-675 47-84 (488)
84 3lqh_A Histone-lysine N-methyl 43.7 8.1 0.00028 38.1 1.6 32 644-675 19-59 (183)
85 2jmi_A Protein YNG1, ING1 homo 43.0 11 0.00039 33.1 2.2 30 644-674 37-70 (90)
86 1ow1_A Smart/HDAC1 associated 42.9 12 0.00043 37.3 2.8 29 88-116 128-163 (195)
87 2vnf_A ING 4, P29ING4, inhibit 40.5 9.5 0.00033 30.8 1.3 30 644-674 21-54 (60)
88 2kvo_A Photosystem II reaction 34.0 9.7 0.00033 35.2 0.4 16 83-98 86-101 (120)
89 2ku7_A MLL1 PHD3-CYP33 RRM chi 31.2 11 0.00037 33.7 0.2 12 646-657 2-13 (140)
90 1x4i_A Inhibitor of growth pro 29.5 14 0.00049 30.7 0.6 31 643-674 16-50 (70)
No 1
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.88 E-value=1.9e-23 Score=219.60 Aligned_cols=170 Identities=24% Similarity=0.326 Sum_probs=130.8
Q ss_pred eeecCH-HHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCcCEEEEEeC
Q 004427 236 FVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDD 298 (754)
Q Consensus 236 ~~~v~p-~fL~slst~hi~~pf~AIaELIDNA~DAgA----------------t~V~I~I~~~~~~~~~~~~~~L~I~DN 298 (754)
.|+++- +.|..++.+.|++...||+|||+||+||.+ ..+.|.|.. +.+...|+|.||
T Consensus 27 ~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~------d~~~~tLtI~DN 100 (281)
T 3peh_A 27 QYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISA------NKEKNILSITDT 100 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE------ETTTTEEEEEEC
T ss_pred eehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEE------cCCCcEEEEEeC
Confidence 366663 466666888889999999999999999964 345666653 234689999999
Q ss_pred CCCCCHHhHHHhhh-cccCCCC---------CCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCe
Q 004427 299 GHGMTHQDVVRMTY-FGHKQPD---------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD 368 (754)
Q Consensus 299 G~GMt~eeL~~~l~-fG~S~k~---------~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~ 368 (754)
|+||++++|.++|+ ++.|.+. ..+...||+||+||+|++| +|++|+|+||+.+. .++.|.+-. ..
T Consensus 101 GiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~-vadkV~V~Sk~~~~--~~~~Wes~g--~g 175 (281)
T 3peh_A 101 GIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNDD--EQYIWESTA--DA 175 (281)
T ss_dssp SCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEEET--TS
T ss_pred CCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc-ccCEEEEEEecCCC--CEEEEEECC--Cc
Confidence 99999999988763 5555321 2357899999999999876 99999999999874 477887743 34
Q ss_pred eEEEecc---ccCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHHH
Q 004427 369 NLEIPIV---SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (754)
Q Consensus 369 ~i~VPi~---~~~~~Gt~I~l~l~~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (754)
.+.|... .-..+||.|+|+++++. +++.++.++. |.+||.|+.+||..
T Consensus 176 ~fti~~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l 228 (281)
T 3peh_A 176 KFTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYL 228 (281)
T ss_dssp CEEEEECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEE
T ss_pred cEEEEEcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEE
Confidence 5555332 23468999999999865 7888888865 99999999999974
No 2
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.88 E-value=2.3e-23 Score=214.72 Aligned_cols=172 Identities=22% Similarity=0.285 Sum_probs=132.0
Q ss_pred ceeeecC-HHHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCcCEEEEE
Q 004427 234 KNFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSII 296 (754)
Q Consensus 234 ~~~~~v~-p~fL~slst~hi~~pf~AIaELIDNA~DAgA----------------t~V~I~I~~~~~~~~~~~~~~L~I~ 296 (754)
...|+++ .+.|..++.+.|++...+|+|||+||.||.+ ..+.|.|.. +.+...|+|.
T Consensus 18 ~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~L~I~ 91 (239)
T 3nmq_A 18 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIP------NPQERTLTLV 91 (239)
T ss_dssp EEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEE
T ss_pred eEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------eCCccEEEEE
Confidence 3446666 4577777888999999999999999999964 235666653 2346899999
Q ss_pred eCCCCCCHHhHHHhh-hcccCCC--------CCCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCC
Q 004427 297 DDGHGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK 367 (754)
Q Consensus 297 DNG~GMt~eeL~~~l-~fG~S~k--------~~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~ 367 (754)
|||+||++++|.+.| .++.|.+ ...+...||+||+||+|++| +|++|+|.||+.+. .++.|.+. +.
T Consensus 92 DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~-vadkv~V~Sk~~~~--~~~~W~s~--~~ 166 (239)
T 3nmq_A 92 DTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVVVITKHNDD--EQYAWESS--AG 166 (239)
T ss_dssp ECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEEC--ST
T ss_pred eCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccc-cCCEEEEEEeeCCC--ceeEEEEC--CC
Confidence 999999999997765 3444321 12357899999999999866 99999999999764 46788773 34
Q ss_pred eeEEEeccc--cCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHHH
Q 004427 368 DNLEIPIVS--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (754)
Q Consensus 368 ~~i~VPi~~--~~~~Gt~I~l~l~~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (754)
..+.|.... -..+||.|+|+++++. ++..++.++. |.+||.|..+||..
T Consensus 167 g~fti~~~~~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~~ 219 (239)
T 3nmq_A 167 GSFTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITL 219 (239)
T ss_dssp TEEEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEE
T ss_pred CcEEEEecCCCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceEE
Confidence 466664432 2358999999999865 7888888865 99999999999863
No 3
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.87 E-value=7.9e-23 Score=211.76 Aligned_cols=171 Identities=25% Similarity=0.331 Sum_probs=129.2
Q ss_pred ceeeecCH-HHHHHhhccccCCHHHHHHHHHhcccccCC-----------------------------------------
Q 004427 234 KNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------------------------------- 271 (754)
Q Consensus 234 ~~~~~v~p-~fL~slst~hi~~pf~AIaELIDNA~DAgA----------------------------------------- 271 (754)
+-.|+..- +.|..+..+.|++...+|+|||+||.||..
T Consensus 26 ~~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (272)
T 3ied_A 26 KYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKRIILENNKLIKDAEVVTNEEIKNETEKEKTENVNESTDK 105 (272)
T ss_dssp EEECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------------------
T ss_pred eechHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHHHhccChhhhhcccccccccccccccccccccccccccc
Confidence 34456555 355666888899999999999999999932
Q ss_pred -----------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-cccCCC--------C-CCCCCcccccC
Q 004427 272 -----------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP--------D-ADDPNRIGRFG 330 (754)
Q Consensus 272 -----------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k--------~-~~~~~~IGqfG 330 (754)
..+.|.|.. +.+...|+|.|||+||++++|.++|. ++.|.+ . ..+...|||||
T Consensus 106 ~~~~~e~~~~~~~l~I~I~~------Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFG 179 (272)
T 3ied_A 106 KENVEEEKNDIKKLIIKIKP------DKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFG 179 (272)
T ss_dssp --------CGGGGCCEEEEE------ETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSC
T ss_pred ccccccccCCCCCcEEEEEE------eCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCccc
Confidence 123455543 33567999999999999999998763 444421 1 13578999999
Q ss_pred ceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEeccc--------cCCCCcEEEEEecccc-chhhhhhhh
Q 004427 331 VGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS--------YYRKGQFMELDTVVQS-EATAKYNLK 401 (754)
Q Consensus 331 vGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i~VPi~~--------~~~~Gt~I~l~l~~~~-e~~~~~~L~ 401 (754)
+|||||+| +|++|+|.|| .+ ..++.|.+ .+...+.|.... -..+||.|+|+++++. +++.++.++
T Consensus 180 VGFySaFm-VAdkV~V~Sk-~d--d~~~~WeS--~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik 253 (272)
T 3ied_A 180 VGFYSSFL-VSNRVEVYTK-KE--DQIYRWSS--DLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLK 253 (272)
T ss_dssp CGGGGGGG-TEEEEEEEEE-SS--SCEEEEEE--CSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHH
T ss_pred ceeheeec-cCCEEEEEEc-CC--CceEEEEE--CCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHH
Confidence 99999876 9999999999 32 45788887 455566664332 3468999999999875 788888886
Q ss_pred h-hhhcCCCchhhHHH
Q 004427 402 S-IKEFSPFNKYLIGE 416 (754)
Q Consensus 402 ~-I~kySpF~s~pI~e 416 (754)
. |.+||.|+.+||..
T Consensus 254 ~likkys~fi~~PI~l 269 (272)
T 3ied_A 254 ELIKKYSEFIKFPIEI 269 (272)
T ss_dssp HHHHHHCTTCCSCEEE
T ss_pred HHHHHHHhCCCCCeEE
Confidence 6 99999999999863
No 4
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.87 E-value=4.8e-21 Score=218.25 Aligned_cols=172 Identities=22% Similarity=0.298 Sum_probs=131.1
Q ss_pred eeeecCHH-HHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCcCEEEEEe
Q 004427 235 NFVRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIID 297 (754)
Q Consensus 235 ~~~~v~p~-fL~slst~hi~~pf~AIaELIDNA~DAg----------------At~V~I~I~~~~~~~~~~~~~~L~I~D 297 (754)
..|++..+ .|+.++.+.|+++..||+|||+||+||+ +..+.|.|.. +.+...|+|.|
T Consensus 7 ~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~I~I~D 80 (559)
T 1y4s_A 7 RGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISD 80 (559)
T ss_dssp EECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEE------ETTTTEEEEEE
T ss_pred eeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEE------eCCCcEEEEEE
Confidence 34777774 6677788888999999999999999998 5555565553 12357999999
Q ss_pred CCCCCCHHhHHHhh-hcccCCCC----------CCCCCcccccCceeeeecccccceEEEEEeeCCC-CceeEEEEEecC
Q 004427 298 DGHGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLNQ 365 (754)
Q Consensus 298 NG~GMt~eeL~~~l-~fG~S~k~----------~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~-~sv~~ls~sf~~ 365 (754)
||+||+++++..++ .+++|.+. ..+...||+||+||+|+++ +|++|+|.||+.+. ...++.|.+.
T Consensus 81 nGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s~-- 157 (559)
T 1y4s_A 81 NGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWESA-- 157 (559)
T ss_dssp CSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHH-HEEEEEEEEECSSSCGGGEEEEEEC--
T ss_pred CCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhh-ccCeEEEEEcCCCCCCCeeEEEEEe--
Confidence 99999999998876 47766532 1256799999999998776 99999999999874 3568888763
Q ss_pred CCeeEEEeccccCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHH
Q 004427 366 GKDNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (754)
Q Consensus 366 g~~~i~VPi~~~~~~Gt~I~l~l~~~~-e~~~~~~L~~-I~kySpF~s~pI~ 415 (754)
+...+.+...+-..+||.|+++++++. +++..+.++. |.+||.|..+||.
T Consensus 158 g~~~~~i~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~ 209 (559)
T 1y4s_A 158 GEGEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 209 (559)
T ss_dssp SSSEEEEEEECCCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEE
T ss_pred CCCeeEEeECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceE
Confidence 334454433333468999999998754 6676777765 8999999998875
No 5
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.85 E-value=2.8e-22 Score=210.23 Aligned_cols=168 Identities=19% Similarity=0.312 Sum_probs=127.3
Q ss_pred eecCH-HHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCcCEEEEEeCC
Q 004427 237 VRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 299 (754)
Q Consensus 237 ~~v~p-~fL~slst~hi~~pf~AIaELIDNA~DAgA----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG 299 (754)
|++.- +.|+.++.+.|+++..||+|||+||+||++ ..+.|.|.. +.+...|+|.|||
T Consensus 10 Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~------d~~~~~l~I~DnG 83 (269)
T 1qy5_A 10 FQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTG 83 (269)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred ehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEE------cCCceEEEEEECC
Confidence 44443 456666777888999999999999999975 456666653 2356799999999
Q ss_pred CCCCHHhHHHhh-hcccCCCC-------------CCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecC
Q 004427 300 HGMTHQDVVRMT-YFGHKQPD-------------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ 365 (754)
Q Consensus 300 ~GMt~eeL~~~l-~fG~S~k~-------------~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~ 365 (754)
+||++++|.++| .++.|.+. ..+...||+||+||++++| +|++|+|+||+.+. .++.|.+ .
T Consensus 84 iGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~-va~~v~V~Sk~~~~--~~~~w~s--~ 158 (269)
T 1qy5_A 84 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--D 158 (269)
T ss_dssp CCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--C
T ss_pred CCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhh-ccceEEEEEEecCC--cEEEEEE--e
Confidence 999999998876 45555210 0356789999999998876 99999999999875 4677766 3
Q ss_pred CCeeEEEeccc---cCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHHH
Q 004427 366 GKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (754)
Q Consensus 366 g~~~i~VPi~~---~~~~Gt~I~l~l~~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (754)
+ ..+.|.... -..+||.|+|+++++. ++...+.++. |.+||.|..+||..
T Consensus 159 g-g~~~i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~l 213 (269)
T 1qy5_A 159 S-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYV 213 (269)
T ss_dssp S-SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEEE
T ss_pred C-CEEEEEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeEE
Confidence 3 455554322 2358999999998754 6777777765 89999999999963
No 6
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.85 E-value=5.1e-22 Score=203.71 Aligned_cols=173 Identities=23% Similarity=0.291 Sum_probs=131.3
Q ss_pred CceeeecCH-HHHHHhhccccCCHHHHHHHHHhcccccCCC----------------ccEEEEEecccccCCCCcCEEEE
Q 004427 233 EKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSI 295 (754)
Q Consensus 233 ~~~~~~v~p-~fL~slst~hi~~pf~AIaELIDNA~DAgAt----------------~V~I~I~~~~~~~~~~~~~~L~I 295 (754)
.+..|+++- +.|..++.+.|+.+..+|+|||+||+||+++ .+.|.|.. +.+...|+|
T Consensus 10 ~~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~------d~~~~~i~V 83 (228)
T 3t0h_A 10 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLTI 83 (228)
T ss_dssp EEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE------ETTTTEEEE
T ss_pred cceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEE------eCCeeEEEE
Confidence 344577764 5677778888999999999999999999863 56676653 235689999
Q ss_pred EeCCCCCCHHhHHHhh-hcccCCCC--------CCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCC
Q 004427 296 IDDGHGMTHQDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG 366 (754)
Q Consensus 296 ~DNG~GMt~eeL~~~l-~fG~S~k~--------~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g 366 (754)
.|||+||++++|..++ .++.|.+. ..+...+|+||+||+|+++ ++++|+|.||+.+. .++.|.+. +
T Consensus 84 ~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~-vad~v~V~Sr~~~~--~~~~w~~~--g 158 (228)
T 3t0h_A 84 VDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWESS--A 158 (228)
T ss_dssp EECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CEEEEEEC--S
T ss_pred EeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc-cCCEEEEEEecCCC--CcEEEEEc--C
Confidence 9999999999998765 45554321 1356899999999998866 99999999999863 47888763 3
Q ss_pred CeeEEEecc--ccCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHHH
Q 004427 367 KDNLEIPIV--SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (754)
Q Consensus 367 ~~~i~VPi~--~~~~~Gt~I~l~l~~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (754)
...+.+... .-..+||.|+++++.+. ++...+.++. |.+|+.|..+||..
T Consensus 159 ~~~~~v~~~~~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~~ 212 (228)
T 3t0h_A 159 GGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITL 212 (228)
T ss_dssp TTEEEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEEE
T ss_pred CceEEEeecCCCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeEE
Confidence 334554332 23458999999999764 6666667655 99999999998863
No 7
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.84 E-value=1.5e-21 Score=200.98 Aligned_cols=170 Identities=19% Similarity=0.300 Sum_probs=123.0
Q ss_pred eeeecC-HHHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCcCEEEEEe
Q 004427 235 NFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIID 297 (754)
Q Consensus 235 ~~~~v~-p~fL~slst~hi~~pf~AIaELIDNA~DAgA----------------t~V~I~I~~~~~~~~~~~~~~L~I~D 297 (754)
..|+++ ...++.++.+.|+.+..||+|||+||+||+| ..+.|.|.. +.+...|+|.|
T Consensus 12 ~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~------d~~~~~i~I~D 85 (236)
T 2gqp_A 12 FAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTD 85 (236)
T ss_dssp ECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE------ETTTTEEEEEE
T ss_pred cchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEE------cCCCCEEEEEE
Confidence 346665 3456677777888999999999999999986 345565543 22457999999
Q ss_pred CCCCCCHHhHHHhh-hcccCCCCC-------------CCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEe
Q 004427 298 DGHGMTHQDVVRMT-YFGHKQPDA-------------DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSL 363 (754)
Q Consensus 298 NG~GMt~eeL~~~l-~fG~S~k~~-------------~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf 363 (754)
||+||+++||.++| .+++|.+.. .+...||+||+||+++++ ++++|+|.||+.+. .++.|.+
T Consensus 86 nG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~-va~~v~V~Sr~~~~--~~~~w~~- 161 (236)
T 2gqp_A 86 TGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES- 161 (236)
T ss_dssp CSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE-
T ss_pred CCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhh-cCCEEEEEEeCCCC--ceEEEEE-
Confidence 99999999998876 466663311 345789999999988765 99999999999875 3677765
Q ss_pred cCCCeeEEEeccc---cCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHHH
Q 004427 364 NQGKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (754)
Q Consensus 364 ~~g~~~i~VPi~~---~~~~Gt~I~l~l~~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (754)
.+ ..+.+.... -..+||.|+++++.+. ++...+.++. |.+||+|..+||..
T Consensus 162 -~g-g~~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~~ 217 (236)
T 2gqp_A 162 -DS-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYV 217 (236)
T ss_dssp -SS-SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEEE
T ss_pred -eC-CEEEEEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceEE
Confidence 33 455543222 2357999999998754 5556667654 99999999998863
No 8
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.84 E-value=1.6e-21 Score=202.90 Aligned_cols=172 Identities=23% Similarity=0.286 Sum_probs=130.6
Q ss_pred ceeeecCH-HHHHHhhccccCCHHHHHHHHHhcccccCCC----------------ccEEEEEecccccCCCCcCEEEEE
Q 004427 234 KNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSII 296 (754)
Q Consensus 234 ~~~~~v~p-~fL~slst~hi~~pf~AIaELIDNA~DAgAt----------------~V~I~I~~~~~~~~~~~~~~L~I~ 296 (754)
.-.|+++- +.|..++.+.|++...||+|||+||+||+++ .+.|.|.. +.+...|+|.
T Consensus 39 ~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~I~I~ 112 (256)
T 3o0i_A 39 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLTIV 112 (256)
T ss_dssp EEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEE
T ss_pred eEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------cCCceEEEEe
Confidence 44466664 5666778888899999999999999999763 46676653 2357899999
Q ss_pred eCCCCCCHHhHHHhh-hcccCCCC--------CCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCC
Q 004427 297 DDGHGMTHQDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK 367 (754)
Q Consensus 297 DNG~GMt~eeL~~~l-~fG~S~k~--------~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~ 367 (754)
|||+||++++|..++ .++.|... ..+...+|+||+||+|+++ ++++|+|.||+.+. .++.|.+. +.
T Consensus 113 DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~-Vadkv~V~Sr~~~~--~g~~w~s~--gg 187 (256)
T 3o0i_A 113 DTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWESS--AG 187 (256)
T ss_dssp ECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CEEEEEEC--ST
T ss_pred cCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhc-cCCeEEEEEcCCCC--ceEEEEEe--cc
Confidence 999999999998765 35544321 1357899999999999876 99999999999863 57888773 33
Q ss_pred eeEEEecc--ccCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHHH
Q 004427 368 DNLEIPIV--SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (754)
Q Consensus 368 ~~i~VPi~--~~~~~Gt~I~l~l~~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (754)
..+.|... .-..+||.|+++++.+. ++.+.+.++. |.+||.|..+||..
T Consensus 188 ~~~~v~~~~~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~~ 240 (256)
T 3o0i_A 188 GSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITL 240 (256)
T ss_dssp TEEEEEECCSSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEEE
T ss_pred ceEEEeeCCCCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeEE
Confidence 34554332 23357999999999764 6777777755 99999999998863
No 9
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.83 E-value=5.8e-21 Score=199.77 Aligned_cols=164 Identities=23% Similarity=0.307 Sum_probs=126.0
Q ss_pred HHHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCcCEEEEEeCCCCCCH
Q 004427 241 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 304 (754)
Q Consensus 241 p~fL~slst~hi~~pf~AIaELIDNA~DAgA----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ 304 (754)
.+.+..++...|+++..||+|||+||+||+| +.+.|.|.. +.+...|+|.|||+||++
T Consensus 55 ~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~------d~~~~~I~I~DnG~GMs~ 128 (264)
T 1yc1_A 55 AQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIP------NKQDRTLTIVDTGIGMTK 128 (264)
T ss_dssp HHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEE------ETTTTEEEEEECSCCCCH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEE------CCCeeEEEEEECCcCCCH
Confidence 3566777888889999999999999999998 788888763 234678999999999999
Q ss_pred HhHHHhh-hcccCCCC--------CCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEecc
Q 004427 305 QDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV 375 (754)
Q Consensus 305 eeL~~~l-~fG~S~k~--------~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i~VPi~ 375 (754)
++|..++ .++.|.+. ..+...||+||+||+++++ ++++++|.||+.+. .++.|.+... ..+.+...
T Consensus 129 edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~~--~~~~w~~~~~--~~~~i~~~ 203 (264)
T 1yc1_A 129 ADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWESSAG--GSFTVRTD 203 (264)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHH-HEEEEEEEEECTTS--CCEEEEECST--TEEEEEEC
T ss_pred HHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCcccccc-CCCEEEEEEecCCC--ceEEEEEcCC--ceEEEeec
Confidence 9998765 57766532 1356799999999998876 99999999999874 4677776432 24444322
Q ss_pred -c-cCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHH
Q 004427 376 -S-YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (754)
Q Consensus 376 -~-~~~~Gt~I~l~l~~~~-e~~~~~~L~~-I~kySpF~s~pI~ 415 (754)
. -...||.|+++++.+. ++...+.++. |.+|+.|..+||.
T Consensus 204 ~~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~ 247 (264)
T 1yc1_A 204 TGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 247 (264)
T ss_dssp CSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEE
T ss_pred CCCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEE
Confidence 1 2357999999998654 5555666654 9999999999886
No 10
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.83 E-value=9.4e-21 Score=192.65 Aligned_cols=168 Identities=22% Similarity=0.297 Sum_probs=125.5
Q ss_pred eecC-HHHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCcCEEEEEeCC
Q 004427 237 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 299 (754)
Q Consensus 237 ~~v~-p~fL~slst~hi~~pf~AIaELIDNA~DAgA----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG 299 (754)
|+++ ...++.++...|+++..||+|||+||+||+| ..+.|.+.. +.+...|+|.|||
T Consensus 8 f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~------~~~~~~i~I~DnG 81 (220)
T 2wer_A 8 FQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITP------KPEQKVLEIRDSG 81 (220)
T ss_dssp CCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEE------EGGGTEEEEEECS
T ss_pred eeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEE------CCCCCEEEEEEcC
Confidence 5555 3466777887889999999999999999987 455666653 1246789999999
Q ss_pred CCCCHHhHHHhh-hcccCCC--------CCCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeE
Q 004427 300 HGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL 370 (754)
Q Consensus 300 ~GMt~eeL~~~l-~fG~S~k--------~~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i 370 (754)
+||+++++..++ .+++|.+ ...+...||+||+||+++++ +++++.|.|++.+. .++.|.... ...+
T Consensus 82 ~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~-~~~~v~v~S~~~~~--~~~~~~~~~--~~~~ 156 (220)
T 2wer_A 82 IGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDD--EQYIWESNA--GGSF 156 (220)
T ss_dssp CCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEECS--SSEE
T ss_pred CCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhh-cCCeeEEEEecCCC--ceeEEEeCC--CCce
Confidence 999999998866 5776542 12356899999999987754 99999999999874 367776632 2344
Q ss_pred EEeccc---cCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHH
Q 004427 371 EIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (754)
Q Consensus 371 ~VPi~~---~~~~Gt~I~l~l~~~~-e~~~~~~L~~-I~kySpF~s~pI~ 415 (754)
.+.... -..+||.|+++++.+. ++.+.+.++. |.+|+.|..+||.
T Consensus 157 ~i~~~~~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~ 206 (220)
T 2wer_A 157 TVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQ 206 (220)
T ss_dssp EEEECSSSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEE
T ss_pred EeecccCCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceE
Confidence 443221 2357999999998654 5556666654 8999999998886
No 11
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.7e-20 Score=215.46 Aligned_cols=170 Identities=22% Similarity=0.280 Sum_probs=130.2
Q ss_pred eeecC-HHHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCcCEEEEEeC
Q 004427 236 FVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDD 298 (754)
Q Consensus 236 ~~~v~-p~fL~slst~hi~~pf~AIaELIDNA~DAgA----------------t~V~I~I~~~~~~~~~~~~~~L~I~DN 298 (754)
.|++. .+.|+.++.+.|++...+|+|||+||+||++ ..+.|.|.. +.+...|+|.||
T Consensus 7 ~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~------d~~~~~I~I~Dn 80 (677)
T 2cg9_A 7 EFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITP------KPEQKVLEIRDS 80 (677)
T ss_dssp ECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEE------EGGGTEEEEEEC
T ss_pred ehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEE------eCCCCEEEEEEC
Confidence 46777 4567777888899999999999999999973 345555543 123579999999
Q ss_pred CCCCCHHhHHHhhh-cccCCC--------CCCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCee
Q 004427 299 GHGMTHQDVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 369 (754)
Q Consensus 299 G~GMt~eeL~~~l~-fG~S~k--------~~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~ 369 (754)
|+||+++++.++|+ +++|.+ ...+...|||||+||++|+| ++++|+|+||+.+. .++.|.+. +...
T Consensus 81 GiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~-vadkV~V~Sk~~~~--~~~~W~s~--g~~~ 155 (677)
T 2cg9_A 81 GIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDD--EQYIWESN--AGGS 155 (677)
T ss_dssp SCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGG-TEEEEEEEEECTTS--CEEEEEEC--SSSE
T ss_pred CCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhh-cCcEEEEEEccCCC--ceEEEEEc--CCce
Confidence 99999999998764 555532 12356899999999998866 99999999999984 47888773 3345
Q ss_pred EEEecc---ccCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHHH
Q 004427 370 LEIPIV---SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (754)
Q Consensus 370 i~VPi~---~~~~~Gt~I~l~l~~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (754)
+.|... .-..+||.|+++++++. ++...+.++. |.+||.|+.+||..
T Consensus 156 ~ti~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l 207 (677)
T 2cg9_A 156 FTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQL 207 (677)
T ss_dssp EEEEECCSSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEE
T ss_pred EEEeecCCCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEE
Confidence 544331 23458999999998754 6777788765 89999999999964
No 12
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.80 E-value=4.4e-20 Score=189.87 Aligned_cols=170 Identities=21% Similarity=0.308 Sum_probs=124.1
Q ss_pred eecC-HHHHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCcCEEEEEeCC
Q 004427 237 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDG 299 (754)
Q Consensus 237 ~~v~-p~fL~slst~hi~~pf~AIaELIDNA~DAg----------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG 299 (754)
|+++ ...+..++...++++..||+|||+||+||+ ++.+.|.|.. +.+...|+|.|||
T Consensus 29 f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~------~~~~~~i~I~DnG 102 (235)
T 2ior_A 29 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISDNG 102 (235)
T ss_dssp CCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred eehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEE------cCCceEEEEEECC
Confidence 4444 345566677778889999999999999998 5556666653 1234689999999
Q ss_pred CCCCHHhHHHhh-hcccCCCCC----------CCCCcccccCceeeeecccccceEEEEEeeCCCC-ceeEEEEEecCCC
Q 004427 300 HGMTHQDVVRMT-YFGHKQPDA----------DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSR-SIAFLSQSLNQGK 367 (754)
Q Consensus 300 ~GMt~eeL~~~l-~fG~S~k~~----------~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~-sv~~ls~sf~~g~ 367 (754)
+||++++|..++ .+++|.+.. .+...+|+||+||+++ |.++++++|.||+.+.. ..++.|... +.
T Consensus 103 ~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~-~~~~~~v~V~Sr~~~~~~~~~~~w~~~--~~ 179 (235)
T 2ior_A 103 VGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSA-FIVADKVTVRTRAAGEKPENGVFWESA--GE 179 (235)
T ss_dssp SCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGG-GGTEEEEEEEEECTTSCGGGEEEEEEC--SS
T ss_pred CCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHH-HhCcCeEEEEEecCCCCCceeEEEEec--CC
Confidence 999999998765 577764310 1356899999999977 55999999999998752 467878764 33
Q ss_pred eeEEEeccccCCCCcEEEEEecccc-chhhhhhhh-hhhhcCCCchhhHH
Q 004427 368 DNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLK-SIKEFSPFNKYLIG 415 (754)
Q Consensus 368 ~~i~VPi~~~~~~Gt~I~l~l~~~~-e~~~~~~L~-~I~kySpF~s~pI~ 415 (754)
..+.+....-...||.|+++++++. ++...+.+. +|.+|+.|..+||.
T Consensus 180 ~~~~i~~~~~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~ 229 (235)
T 2ior_A 180 GEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 229 (235)
T ss_dssp SEEEEEEECCCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEE
T ss_pred CcEEEeeCCCCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeE
Confidence 3444432223357999999998754 455556664 49999999998875
No 13
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.79 E-value=3.4e-20 Score=213.64 Aligned_cols=170 Identities=21% Similarity=0.300 Sum_probs=124.7
Q ss_pred eecCH-HHHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCcCEEEEEeCC
Q 004427 237 VRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDG 299 (754)
Q Consensus 237 ~~v~p-~fL~slst~hi~~pf~AIaELIDNA~DAg----------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG 299 (754)
|++.. +.|+.++.+.|+++..||+|||+||+||+ ++.+.|.|.. +.+...|+|.|||
T Consensus 9 Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~------d~~~~~I~I~DnG 82 (624)
T 2ioq_A 9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISDNG 82 (624)
T ss_dssp ------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred eeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEE------eCCCcEEEEEECC
Confidence 55555 35677777788899999999999999998 5555666653 2235799999999
Q ss_pred CCCCHHhHHHhh-hcccCCCC----------CCCCCcccccCceeeeecccccceEEEEEeeCCC-CceeEEEEEecCCC
Q 004427 300 HGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLNQGK 367 (754)
Q Consensus 300 ~GMt~eeL~~~l-~fG~S~k~----------~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~-~sv~~ls~sf~~g~ 367 (754)
+||+++++..++ .+++|.+. ..+...||+||+||+|+++ +|++|+|.||+.+. ...++.|.+...
T Consensus 83 iGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s~g~-- 159 (624)
T 2ioq_A 83 VGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWESAGE-- 159 (624)
T ss_dssp CCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHH-HEEEEEEEEECTTSCGGGEEEEEECSS--
T ss_pred CCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHh-cCCeEEEEECCCCCCCCeeEEEEEeCC--
Confidence 999999998876 46666432 1356799999999998776 99999999999873 356888877433
Q ss_pred eeEEEeccccCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHH
Q 004427 368 DNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (754)
Q Consensus 368 ~~i~VPi~~~~~~Gt~I~l~l~~~~-e~~~~~~L~~-I~kySpF~s~pI~ 415 (754)
..+.+....-..+||.|+++++++. ++...+.++. |.+||.|..+||.
T Consensus 160 ~~~~i~~~~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~ 209 (624)
T 2ioq_A 160 GEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 209 (624)
T ss_dssp SCCEEEEECCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEE
T ss_pred CeEEEEECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceE
Confidence 3343332223468999999998754 6777778765 8999999998875
No 14
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.79 E-value=4.2e-20 Score=213.77 Aligned_cols=167 Identities=20% Similarity=0.319 Sum_probs=111.9
Q ss_pred eecCH-HHHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCcCEEEEEeCC
Q 004427 237 VRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDG 299 (754)
Q Consensus 237 ~~v~p-~fL~slst~hi~~pf~AIaELIDNA~DAg----------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG 299 (754)
|+..- +.|+.++.+.|+++..+|+|||+||+||+ +..+.|.|.. +.+...|+|.|||
T Consensus 27 Fqaei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~------d~~~~~I~I~DnG 100 (666)
T 2o1u_A 27 FQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTG 100 (666)
T ss_dssp -------CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred hHHhHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEE------eCCCCEEEEEECC
Confidence 44443 34555677788899999999999999997 6556666653 2345799999999
Q ss_pred CCCCHHhHHHhhh-cccCCCC--------C-----CCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecC
Q 004427 300 HGMTHQDVVRMTY-FGHKQPD--------A-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ 365 (754)
Q Consensus 300 ~GMt~eeL~~~l~-fG~S~k~--------~-----~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~ 365 (754)
+||+++|+..+|+ ++.|.+. . .+...||+||+||++++| +|++|+|.||+.+. .++.|.+ .
T Consensus 101 iGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~-vAdkV~V~Sr~~~~--~~~~W~s--~ 175 (666)
T 2o1u_A 101 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--D 175 (666)
T ss_dssp CCCCHHHHHHHTTC-------------------------------CTTGGGGG-TEEEEEEEEECTTS--CCEEEEE--S
T ss_pred CCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHH-hcCEEEEEEeeCCC--ceEEEEE--e
Confidence 9999999988763 5555221 1 356799999999998865 99999999999875 3777876 3
Q ss_pred CCeeEEEeccc---cCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHH
Q 004427 366 GKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (754)
Q Consensus 366 g~~~i~VPi~~---~~~~Gt~I~l~l~~~~-e~~~~~~L~~-I~kySpF~s~pI~ 415 (754)
+ ..+.|.... -..+||.|+++++++. ++...+.++. |.+||.|..+||.
T Consensus 176 g-g~~ti~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~ 229 (666)
T 2o1u_A 176 S-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 229 (666)
T ss_dssp S-SCCEEEECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEE
T ss_pred C-CeEEEEecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceE
Confidence 3 444443222 2357999999998754 6777778765 9999999998875
No 15
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.66 E-value=4.2e-17 Score=138.00 Aligned_cols=55 Identities=33% Similarity=0.659 Sum_probs=49.2
Q ss_pred cCCCCCCCceeeCc--cchhhccCCCCCCCCCCCCCceecCCCC--CCCCCCCcccccC
Q 004427 637 GALYKPDQEWVQCN--KCRKWRMLDPGFDTKSLPVEWFCYMKPF--EGLCDLPEQKVDA 691 (754)
Q Consensus 637 ~~~~~~~~~WVQCd--~C~KWR~Lp~~~~~~~lp~~W~C~mn~~--~~sC~~pEe~~~~ 691 (754)
+.......+||||| +|+|||+||.++++..+|++|||+||++ +++|++|||.++.
T Consensus 9 ~~~~~~~~~WVQCd~p~C~KWR~LP~~~~~~~lpd~W~C~mN~d~~~~~Cs~pEE~~~~ 67 (69)
T 2e61_A 9 ISGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEETWTG 67 (69)
T ss_dssp SSSCCCCCCEEECSSTTTCCEEECCSSCCTTTSCTTCCGGGCSCGGGCSSSSCCCCCCC
T ss_pred CCCCCCCCeEEEeCccccCcccCCccccccccCCCcCEeCCCCCCccCCCCCCcccCCC
Confidence 44456688999999 9999999999999888999999999997 5999999998864
No 16
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.62 E-value=1.1e-14 Score=156.81 Aligned_cols=110 Identities=20% Similarity=0.249 Sum_probs=87.9
Q ss_pred ceeeecCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhh-
Q 004427 234 KNFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT- 311 (754)
Q Consensus 234 ~~~~~v~p~fL~sl-st~hi~~pf~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l- 311 (754)
|.+..+++...+.+ +...+.++..+|+|||+||+||+|+.|.|.+.. .+...|+|.|||.||+++++..++
T Consensus 3 m~I~~L~~~~~~~I~agevi~~~~~~v~ELi~NaidA~a~~I~I~i~~-------~~~~~i~V~DnG~Gi~~~~l~~~~~ 75 (333)
T 1b63_A 3 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIER-------GGAKLIRIRDNGCGIKKDELALALA 75 (333)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGHHHHHS
T ss_pred CcceECCHHHHHHHhcCCchhCHHHHHHHHHHHHHHCCCCeEEEEEEe-------CCceEEEEEEcCCCcCHHHHHHhhh
Confidence 34678999999999 455667999999999999999999999998873 234689999999999999999987
Q ss_pred hcccCCCCCC-----CCCcccccCceeeeecccccceEEEEEeeCCC
Q 004427 312 YFGHKQPDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADS 353 (754)
Q Consensus 312 ~fG~S~k~~~-----~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~ 353 (754)
.|+++ |... ....+|.+|+|+.+.+ .++ +++|.||+.+.
T Consensus 76 ~~~ts-K~~~~~d~~~~~~~G~~G~gl~si~-~vs-~l~v~s~~~~~ 119 (333)
T 1b63_A 76 RHATS-KIASLDDLEAIISLGFRGEALASIS-SVS-RLTLTSRTAEQ 119 (333)
T ss_dssp TTCCS-SCCSHHHHHTCCSSCCSSCHHHHHH-TTS-EEEEEEECTTC
T ss_pred ccccc-CccccchhhhccccCccccchhhhh-cCC-cEEEEEecCCC
Confidence 46554 3211 2357899999996553 366 79999999874
No 17
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=99.58 E-value=1.6e-16 Score=143.00 Aligned_cols=59 Identities=19% Similarity=0.530 Sum_probs=50.2
Q ss_pred cCCCCCCCceeeCccchhhccCCCCCC-CCCCCCCceecCCCC--CCCCCCCcccccCCcee
Q 004427 637 GALYKPDQEWVQCNKCRKWRMLDPGFD-TKSLPVEWFCYMKPF--EGLCDLPEQKVDAGVVT 695 (754)
Q Consensus 637 ~~~~~~~~~WVQCd~C~KWR~Lp~~~~-~~~lp~~W~C~mn~~--~~sC~~pEe~~~~~~~~ 695 (754)
+..+.+..+|||||+|+|||+||.++. ...+|++|+|+||++ +++|++|||.+++++..
T Consensus 19 ~~~~~~~~~WVQCD~C~KWRrLP~~~~~~~~~pd~W~C~mN~D~~~nsCs~PEE~~~~ei~~ 80 (100)
T 2l7p_A 19 EDSYSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNSDKRFADCSKSQEMSNEEINE 80 (100)
T ss_dssp SSCCSSSSEEEECTTTCCEEEECHHHHTTSTTSSCCCGGGSSCSSSCSTTSCCSSCHHHHHH
T ss_pred CCCCCCCCeEEeeCCCCccccCChhHccccCCCCCceeCCCCCCCCCCCCCccCCCHHHHHH
Confidence 444667899999999999999998765 356899999999996 59999999999877544
No 18
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.1e-12 Score=143.22 Aligned_cols=139 Identities=18% Similarity=0.175 Sum_probs=92.5
Q ss_pred eeecCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-c
Q 004427 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 313 (754)
Q Consensus 236 ~~~v~p~fL~sl-st~hi~~pf~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-f 313 (754)
+..+++..++.+ +...+..+..+|.|||+||+||+|+.|.|.+. ..+...|+|.|||+||+++++..++. |
T Consensus 6 I~~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~~I~I~i~-------~~~~~~i~V~DnG~Gi~~~~l~~~~~~~ 78 (367)
T 3h4l_A 6 IHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFK-------DYGLESIECSDNGDGIDPSNYEFLALKH 78 (367)
T ss_dssp -------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEE-------TTTTSEEEEEECSCCCCGGGTTTTTCCE
T ss_pred ceeCCHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCCCEEEEEEE-------eCCEEEEEEEECCCCcChhHhccceecc
Confidence 567888899999 55667899999999999999999999999886 33567999999999999999988765 3
Q ss_pred ccCCCC-CCC---CCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEeccccCCCCcEEEEE
Q 004427 314 GHKQPD-ADD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 387 (754)
Q Consensus 314 G~S~k~-~~~---~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i~VPi~~~~~~Gt~I~l~ 387 (754)
.++... .++ ....|..|.|+.+.+ .++ +++|.||+.+ ..++.+..-..|. +..+.+.-...||.|++.
T Consensus 79 ~tsK~~~~~Dl~~i~t~GfrGeaL~Si~-avS-~l~V~sr~~~--~~~~~~~~~~~G~--~~~~~~~~~~~GTtV~v~ 150 (367)
T 3h4l_A 79 YTSKIAKFQDVAKVQTLGFRGEALSSLC-GIA-KLSVITTTSP--PKADKLEYDMVGH--ITSKTTTSRNKGTTVLVS 150 (367)
T ss_dssp EC---------CCCCEEEETTHHHHHHH-HSS-EEEEEEESST--TCEEEEEECTTCC--EEEEEEECCSSEEEEEEE
T ss_pred ccCcCCchhhhhhhhccCccchHHHHhh-ccC-EEEEEEEECC--CCEEEEEEcCCCc--EEeeccccCCCCeEEEEc
Confidence 333221 122 345677899986544 477 6999999987 4555554322333 222222234579999874
No 19
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.29 E-value=4.2e-12 Score=138.40 Aligned_cols=139 Identities=18% Similarity=0.251 Sum_probs=86.5
Q ss_pred eeecCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-c
Q 004427 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 313 (754)
Q Consensus 236 ~~~v~p~fL~sl-st~hi~~pf~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-f 313 (754)
+..+++...+.+ +...+..+..+|.|||+||+||+|+.|.|.+.. .+...|+|.|||.||+.+++..++. |
T Consensus 15 I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~~I~I~i~~-------~~~~~I~V~DnG~Gi~~~~l~~~f~~~ 87 (365)
T 1h7s_A 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKD-------YGVDLIEVSDNGCGVEEENFEGLTLKH 87 (365)
T ss_dssp --------------CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGSGGGGC--
T ss_pred hccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCCEEEEEEEe-------CCcEEEEEEECCCCcCHHHHHHHhhhc
Confidence 567888888888 455667999999999999999999999998862 2356899999999999999998764 5
Q ss_pred ccCCCCC-CC---CCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEec-CCCeeEEEeccccCCCCcEEEEE
Q 004427 314 GHKQPDA-DD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLN-QGKDNLEIPIVSYYRKGQFMELD 387 (754)
Q Consensus 314 G~S~k~~-~~---~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~-~g~~~i~VPi~~~~~~Gt~I~l~ 387 (754)
.++.... .+ ....|.+|+|+.+.+. ++ +++|.||+.+. ..++.+. |. .|. +....+.-..+||.|++.
T Consensus 88 ~tsK~~~~~dl~~i~s~G~rG~gl~si~~-vs-~v~v~t~~~~~-~~~~~~~-~~~~G~--~~~~~~~~~~~GT~V~v~ 160 (365)
T 1h7s_A 88 HTSKIQEFADLTQVETFGFRGEALSSLCA-LS-DVTISTCHASA-KVGTRLM-FDHNGK--IIQKTPYPRPRGTTVSVQ 160 (365)
T ss_dssp --------CCTTCSEEESSSSSHHHHHHH-HS-EEEEEEECTTC-SSCEEEE-ECTTSC--EEEEEECCCCSEEEEEEE
T ss_pred cccccccccchhcccccCCCCchhhhhhh-hc-cEEEEEccCCC-cceEEEE-EcCCCc--eEeecccCCCCCcEEEEe
Confidence 4442211 12 2357889999965544 77 99999999875 3344443 32 332 222222223579999885
No 20
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.25 E-value=8.2e-12 Score=135.31 Aligned_cols=139 Identities=19% Similarity=0.286 Sum_probs=96.8
Q ss_pred eeecCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcc
Q 004427 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFG 314 (754)
Q Consensus 236 ~~~v~p~fL~sl-st~hi~~pf~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG 314 (754)
+..+++..++.+ +...+..+..+|.|||+||+||+|+.|.|.+.. .+...|+|.|||.||+++++..++...
T Consensus 9 I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~~-------~~~~~I~V~DnG~GI~~~~l~~~~~~~ 81 (348)
T 3na3_A 9 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKE-------GGLKLIQIQDNGTGIRKEDLDIVCERF 81 (348)
T ss_dssp CCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGGGTTTSTT
T ss_pred cccCCHHHHHhhcccCcccCHHHHHHHHHHHHHHcCCCEEEEEEEe-------CCEEEEEEEECCcCcChHHhhhhhccc
Confidence 568999999999 556678999999999999999999999999862 235679999999999999998877533
Q ss_pred cCCCCC--CC---CCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeE-EEeccccCCCCcEEEEE
Q 004427 315 HKQPDA--DD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL-EIPIVSYYRKGQFMELD 387 (754)
Q Consensus 315 ~S~k~~--~~---~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i-~VPi~~~~~~Gt~I~l~ 387 (754)
.+.|.. ++ ....|.+|.|+.+.+ .++ +++|.||+.+.. .++.+. |..|.-.. .-|. -...||.|++.
T Consensus 82 ~tsK~~~~~dl~~i~s~GfrGeaL~Si~-avs-~l~v~sr~~~~~-~~~~~~-~~~G~~~~~~~~~--~~~~GTtV~v~ 154 (348)
T 3na3_A 82 TTSKLQSFEDLASISTYGFRGEALASIS-HVA-HVTITTKTADGK-CAYRAS-YSDGKLKAPPKPC--AGNQGTQITVE 154 (348)
T ss_dssp CCSSCCCC---------CCTTCHHHHHH-HSS-EEEEEEECTTCS-SEEEEE-EETTEESSCCEEE--CCCSEEEEEEE
T ss_pred cccccCcchhhhccccCCcCChHHHHhh-ccc-EEEEEEEECCCC-ceEEEE-EeCCEEeeeeeEe--cCCCCcEEEEC
Confidence 333321 12 356799999995544 477 799999998853 344332 33332100 0121 23579999874
No 21
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.00 E-value=4.5e-09 Score=115.59 Aligned_cols=89 Identities=19% Similarity=0.190 Sum_probs=65.7
Q ss_pred CHHHHHHHHHhccccc---C-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhH--------HHhhh-cccCCCCC
Q 004427 254 WIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDA 320 (754)
Q Consensus 254 ~pf~AIaELIDNA~DA---g-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-fG~S~k~~ 320 (754)
-+...+.|||+||+|| | |+.|+|.|.. ...|+|.|||.||+.++. .-+|. +..+.|-.
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~ 104 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---------DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 104 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEECT---------TSCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSS
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEEeC---------CCEEEEEECCCCcccCcccccCcchHHHhheeccccCCcC
Confidence 4788999999999999 5 9999998862 138999999999999883 33343 22222211
Q ss_pred --CCCCcccccCceeeeecccccceEEEEEeeCC
Q 004427 321 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQTAD 352 (754)
Q Consensus 321 --~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g 352 (754)
.-....|..|+|+.+.. .++..++|.|++.+
T Consensus 105 ~~~~~vSgGl~GvGls~vn-alS~~l~v~~~r~g 137 (391)
T 1ei1_A 105 DNSYKVSGGLHGVGVSVVN-ALSQKLELVIQREG 137 (391)
T ss_dssp SSSCSSCSCCSSCHHHHHH-HTEEEEEEEEEETT
T ss_pred CCcccccCCccccchHHHH-HhcCeEEEEEEeCC
Confidence 12347788999995544 48889999998766
No 22
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.91 E-value=2.2e-08 Score=109.40 Aligned_cols=88 Identities=8% Similarity=0.004 Sum_probs=57.8
Q ss_pred CHHHHHHHHHhccccc----CCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCccccc
Q 004427 254 WIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 329 (754)
Q Consensus 254 ~pf~AIaELIDNA~DA----gAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqf 329 (754)
-|..++.||||||+|| +|+.|+|.|.. + ..|+|.|||.||+. |+.-.+--|.+-.........+.-
T Consensus 30 gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~-------~--g~I~V~DnGrGIp~-e~v~~lhagsKf~~~~~~~~y~vs 99 (369)
T 3cwv_A 30 GLHHLVYFLLDVAYEEARRGECRDVVLEVGG-------D--GSIALFCTSRTVTA-ENLVRVATGAGFLGRPPGDGWGWD 99 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEEEECT-------T--SCEEEEEEESSCCH-HHHHHHHTTTTGGGSSCCCSTTTT
T ss_pred hHHHHHHHHHhhhHhHHhhCCCCEEEEEEeC-------C--CEEEEEECCCCcCH-hHeeeeecCCCcCCCccccccccc
Confidence 4778999999999998 79999999862 1 38999999999999 433222222211110000122222
Q ss_pred CceeeeecccccceEEEEEeeCCC
Q 004427 330 GVGFKTGAMRLGKDALVLTQTADS 353 (754)
Q Consensus 330 GvGfKsAsmrLg~~v~V~SK~~g~ 353 (754)
| |.+ +.-.++..++|.|++.+.
T Consensus 100 G-Gls-~vnalSs~l~v~t~r~g~ 121 (369)
T 3cwv_A 100 S-MLV-VSLALSSRYQVDIWADGR 121 (369)
T ss_dssp S-SHH-HHHHTEEEEEEEEEETTE
T ss_pred C-HHH-HHHHhhceEEEEEEECCC
Confidence 5 763 333478899999998763
No 23
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.87 E-value=3.4e-08 Score=108.52 Aligned_cols=89 Identities=18% Similarity=0.149 Sum_probs=64.5
Q ss_pred CHHHHHHHHHhcccccC----CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHH--------hhh-cccCCCC-
Q 004427 254 WIFGAIAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPD- 319 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAg----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-fG~S~k~- 319 (754)
-+...|.|||+||+|+. ++.|.|.+.. ...|+|.|||.||+.+++.+ ++. |-...+-
T Consensus 32 g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~---------~~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~ 102 (390)
T 1kij_A 32 GYHHLFKEILDNAVDEALAGYATEILVRLNE---------DGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFE 102 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEEEEEECT---------TSCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGG
T ss_pred hHHHHHHHHHHHHHHHhhhCCCCEEEEEEEc---------CCEEEEEEcCCCCCHHHhhhccccchhhheeeeeeccccc
Confidence 35689999999999995 7888888752 14899999999999998755 443 2121111
Q ss_pred -CCCCCcccccCceeeeecccccceEEEEEeeCC
Q 004427 320 -ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTAD 352 (754)
Q Consensus 320 -~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g 352 (754)
.......|..|+|++.+ -.++..+.|.|++.+
T Consensus 103 ~~~~~~s~G~~G~Gls~v-~als~~~~v~t~~~g 135 (390)
T 1kij_A 103 QGAYKVSGGLHGVGASVV-NALSEWTVVEVFREG 135 (390)
T ss_dssp GSSCCCCSCSSTTSHHHH-HHTEEEEEEEEEETT
T ss_pred CccccccCCCCCcceeee-cccccceEEEEecCC
Confidence 11123568999999554 458899999999765
No 24
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.82 E-value=9.1e-09 Score=103.50 Aligned_cols=120 Identities=19% Similarity=0.218 Sum_probs=71.0
Q ss_pred HHHHHHHHHhccccc---C-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhH--------HHhhh-cccCCCCCC
Q 004427 255 IFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDAD 321 (754)
Q Consensus 255 pf~AIaELIDNA~DA---g-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-fG~S~k~~~ 321 (754)
+..++.|||+||+|| | |+.|+|.|.. ...|+|.|||.||+.+++ .-++. .-.+.|-..
T Consensus 18 ~~~~v~Elv~NsiDa~~~g~a~~I~V~i~~---------~g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~ 88 (201)
T 3fv5_A 18 PNHLGQEVIDNSVDEALAGHAKRVDVILHA---------DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN 88 (201)
T ss_dssp THHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC--------
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEEEeC---------CCEEEEEECCCCcCcccccccCcchhheeeeeeccccCcCC
Confidence 478999999999999 5 9999998862 238999999999999884 22222 212222111
Q ss_pred --CCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEecc-cc--CCCCcEEEEEe
Q 004427 322 --DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV-SY--YRKGQFMELDT 388 (754)
Q Consensus 322 --~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i~VPi~-~~--~~~Gt~I~l~l 388 (754)
-....|..|.|+.+.. .++..++|.|++.+. .+.+.|..|.-.-.++.. .- ...||.|++.+
T Consensus 89 ~~~~~s~GfrGeglssin-alS~~l~v~t~~~g~----~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~P 155 (201)
T 3fv5_A 89 KNYQFSGGLHGVGISVVN-ALSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWP 155 (201)
T ss_dssp -------------CHHHH-HTEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEE
T ss_pred CcccccCcccceecchhh-cccceEEEEEEecCc----eEEEEEeCCEEcccceecccCCCCCCCeEEEEEE
Confidence 1346888999996544 488899999998764 255666555422222221 22 35799998754
No 25
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.79 E-value=3.5e-07 Score=100.53 Aligned_cols=119 Identities=19% Similarity=0.218 Sum_probs=78.4
Q ss_pred HHHHHHHHhccccc---C-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHh--------HHHhhh-cccCCCCC--
Q 004427 256 FGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPDA-- 320 (754)
Q Consensus 256 f~AIaELIDNA~DA---g-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-fG~S~k~~-- 320 (754)
...+.|||+||+|| | |+.|.|.|.. ...|+|.|||.||+.++ +..+|. +-.+.|-.
T Consensus 33 ~~lv~ElvdNsiD~a~~g~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~ 103 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALAGHAKRVDVILHA---------DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNK 103 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEec---------CCEEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCC
Confidence 67999999999999 4 9999999862 13899999999999988 444443 22222211
Q ss_pred CCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEe-ccccC--CCCcEEEEEe
Q 004427 321 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IVSYY--RKGQFMELDT 388 (754)
Q Consensus 321 ~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i~VP-i~~~~--~~Gt~I~l~l 388 (754)
.-....|..|+|+.+.. .|+..++|.|++.+. .+.+.|..|.-.-.+. +.... ..||.|++.+
T Consensus 104 ~~~~sgGl~GvGls~vn-alS~~l~v~~~r~g~----~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~P 169 (390)
T 1s16_A 104 NYQFSGGLHGVGISVVN-ALSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWP 169 (390)
T ss_dssp SCSSCSCCSSCHHHHHH-HTEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEE
T ss_pred cccccCCccccchHHHH-HhhcccEEEEEECCc----EEEEEEeCCcccccceecccccCCCCceEEEEEE
Confidence 12346788999995544 488899999997652 3455665552111111 12223 4677777653
No 26
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.54 E-value=1.5e-07 Score=103.88 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=64.1
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHh--------HHHhhh-cccCCCC
Q 004427 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPD 319 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAg-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-fG~S~k~ 319 (754)
-+...+.||||||+||+ ++.|.|.|.. +...|+|.|||.||+.++ +.-+|. .-.+.|-
T Consensus 52 GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~--------~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf 123 (400)
T 1zxm_A 52 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDP--------ENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNY 123 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCC
T ss_pred hHHHHHHHHHhhHHhHHhhcCCCceEEEEEEC--------CCCEEEEEECCCcccCccccccCccchhheeeeecccCCC
Confidence 45688999999999997 7899998872 126999999999999887 333343 2112221
Q ss_pred C--CCCCcccccCceeeeecccccceEEEEEeeC
Q 004427 320 A--DDPNRIGRFGVGFKTGAMRLGKDALVLTQTA 351 (754)
Q Consensus 320 ~--~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~ 351 (754)
. .-....|..|+|..+. -.|+..+.|.++..
T Consensus 124 ~~~~ykvSgGlhGvGlsvV-nAlS~~l~v~v~~~ 156 (400)
T 1zxm_A 124 DDDEKKVTGGRNGYGAKLC-NIFSTKFTVETASR 156 (400)
T ss_dssp CGGGCCCCSCCSSCHHHHH-HHTEEEEEEEEEET
T ss_pred CCCcccccCCccccceeee-EEeccceEEEEecC
Confidence 1 1134779999999544 44889999999874
No 27
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.49 E-value=2.4e-07 Score=94.55 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=75.1
Q ss_pred CHHHHHHHHHhccccc----CCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhH--------HHhhh-cccCCCC-
Q 004427 254 WIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPD- 319 (754)
Q Consensus 254 ~pf~AIaELIDNA~DA----gAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-fG~S~k~- 319 (754)
-+...+.|||+||+|+ .|+.|+|.|.. ...|+|.|||.||+.+.. .-+|. +-.+.|-
T Consensus 35 gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~---------~g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd 105 (220)
T 4duh_A 35 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---------DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 105 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCEEEEEECT---------TSCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCC
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEEeC---------CCcEEEEECCcCcccccccccCcchhhheeeecccCCCcC
Confidence 4778999999999999 89999999862 247999999999999863 22232 2112221
Q ss_pred -CCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCe--eE-EEeccccCCCCcEEEEEe
Q 004427 320 -ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NL-EIPIVSYYRKGQFMELDT 388 (754)
Q Consensus 320 -~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~--~i-~VPi~~~~~~Gt~I~l~l 388 (754)
..-...-|..|+|.++. -.|+..+.|.+++++. .+.+.|..|.- .+ .++ .-...||+|++.+
T Consensus 106 ~~~yk~SgGlhGvG~svv-NAlS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~~~g--~~~~~GT~V~F~P 171 (220)
T 4duh_A 106 DNSYKVSGGLHGVGVSVV-NALSQKLELVIQREGK----IHRQIYEHGVPQAPLAVTG--ETEKTGTMVRFWP 171 (220)
T ss_dssp TTC--------CCCHHHH-HHTEEEEEEEEEETTE----EEEEEEETTEESSSCEEEE--ECSCCEEEEEEEE
T ss_pred CCccccccCccceecchh-cccccceEEEEEECCE----EEEEEecCCcCcCCceecc--ccCCCCcEEEEEE
Confidence 11246778999999544 4488999999998774 24566654431 11 112 2245799988764
No 28
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.42 E-value=5.9e-07 Score=92.05 Aligned_cols=140 Identities=20% Similarity=0.201 Sum_probs=84.0
Q ss_pred ceeeecCHHHHHHhhccccCCHHHHHHHHHhccccc----CCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHh---
Q 004427 234 KNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--- 306 (754)
Q Consensus 234 ~~~~~v~p~fL~slst~hi~~pf~AIaELIDNA~DA----gAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--- 306 (754)
..++|..|...- ++....-+...+.|||+||+|+ .++.|+|.|.. ...|+|.|||.||+.++
T Consensus 22 le~vr~RPgmYi--Gs~~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~---------~g~i~V~DnG~GIp~~~h~~ 90 (226)
T 4emv_A 22 LDAVRKRPGMYI--GSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINK---------DGSLTVQDHGRGMPTGMHAM 90 (226)
T ss_dssp THHHHHCHHHHH--SCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBCGG
T ss_pred hHHHhhCCceEE--cCCCcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeC---------CCeEEEEEcCCCcccccccc
Confidence 344555555331 2211123678999999999999 88999988762 24899999999999988
Q ss_pred ----HHHhhh-cccCCCCC--CCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCC-Ce--eEE-Eecc
Q 004427 307 ----VVRMTY-FGHKQPDA--DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG-KD--NLE-IPIV 375 (754)
Q Consensus 307 ----L~~~l~-fG~S~k~~--~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g-~~--~i~-VPi~ 375 (754)
+.-+|. +-.+.|-. .-...-|..|+|.++. -.|+..+.|.+++++. .+.+.|..| .- .+. +...
T Consensus 91 ~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svv-NALS~~l~v~v~r~g~----~~~q~f~~Gg~~~~~l~~ig~~ 165 (226)
T 4emv_A 91 GIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV-NALSSWLEVEITRDGA----VYKQRFENGGKPVTTLKKIGTA 165 (226)
T ss_dssp GCBHHHHHHHCBC--------------CGGGCCHHHH-HHTEEEEEEEEEETTE----EEEEEEETTTEESSCSEEEEEC
T ss_pred CceehheeEEeecccCccCccceEeccccccccchhh-hhcccceEEEEEeCCc----EEEEEECCCCEEcCCceEeccc
Confidence 444443 22222211 1246779999999544 4489999999998774 345666554 21 111 1111
Q ss_pred ccCCCCcEEEEEec
Q 004427 376 SYYRKGQFMELDTV 389 (754)
Q Consensus 376 ~~~~~Gt~I~l~l~ 389 (754)
.-...||+|++.+.
T Consensus 166 ~~~~~GT~V~F~PD 179 (226)
T 4emv_A 166 LKSKTGTKVTFMPD 179 (226)
T ss_dssp CTTCCEEEEEEEEC
T ss_pred CCCCCCeEEEEEEC
Confidence 11457999887643
No 29
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.36 E-value=8.9e-07 Score=99.55 Aligned_cols=96 Identities=22% Similarity=0.342 Sum_probs=67.9
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-cccCCCCCCCCCccc
Q 004427 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAgAt-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~~~~~IG 327 (754)
.+..+|.|||+||+||++. .|.|.+.... ...+...|+|.|||.||+.+++..++. |..+.+. ......|
T Consensus 32 ~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~---~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 107 (471)
T 1mu5_A 32 ALYQTVRELIENSLDATDVHGILPNIKITIDLID---DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 107 (471)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEE---TTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECC---CcCcEEEEEEEECCCCCCHHHHHHHhccccccccc-ccccCCC
Confidence 4678999999999999876 6777776410 012456899999999999999999875 4344332 1235668
Q ss_pred ccCceeeeecc---cccce-EEEEEeeCCC
Q 004427 328 RFGVGFKTGAM---RLGKD-ALVLTQTADS 353 (754)
Q Consensus 328 qfGvGfKsAsm---rLg~~-v~V~SK~~g~ 353 (754)
..|+|+..+.. ..|.. +.|.|+..+.
T Consensus 108 g~GLGL~iv~~l~~~~gG~~i~v~S~~~~g 137 (471)
T 1mu5_A 108 MYGLGVKAAVLYSQMHQDKPIEIETSPVNS 137 (471)
T ss_dssp SCTTTHHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred CceeeHHHHHHHHHHhCCCceeEEEecCCC
Confidence 89999965432 23444 9999987764
No 30
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.32 E-value=8.8e-07 Score=100.94 Aligned_cols=96 Identities=22% Similarity=0.342 Sum_probs=68.9
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-cccCCCCCCCCCccc
Q 004427 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAgAt-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~~~~~IG 327 (754)
.+..+|.|||+||+||++. .|.|.+.... ...+...|+|.|||.||+.+++..++. |..+.+. ......|
T Consensus 31 ~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~---~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 106 (530)
T 2zbk_B 31 ALYQTVRELIENSLDATDVHGILPNIKITIDLID---DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 106 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEE---TTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECC---CcCceEEEEEEECCCCCCHHHHHHHhccccccCCc-ccccCCC
Confidence 4678999999999999876 7888876410 012456899999999999999998875 4343332 1235678
Q ss_pred ccCceeeeecc---cccce-EEEEEeeCCC
Q 004427 328 RFGVGFKTGAM---RLGKD-ALVLTQTADS 353 (754)
Q Consensus 328 qfGvGfKsAsm---rLg~~-v~V~SK~~g~ 353 (754)
..|+|+..+.. ..|.. +.|.|+..+.
T Consensus 107 g~GLGLsiv~~l~~~~gG~~I~V~S~~~~g 136 (530)
T 2zbk_B 107 MYGLGVKAAVLYSQMHQDKPIEIETSPVNS 136 (530)
T ss_dssp SSSSHHHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred CccchHHHHHHHHHHhCCCceEEEEecCCC
Confidence 89999965432 23444 9999987664
No 31
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.14 E-value=3e-06 Score=93.66 Aligned_cols=120 Identities=19% Similarity=0.175 Sum_probs=70.2
Q ss_pred HHHHHHHHHhccccc----CCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhH--------HHhhh-cccCCCC--
Q 004427 255 IFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPD-- 319 (754)
Q Consensus 255 pf~AIaELIDNA~DA----gAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-fG~S~k~-- 319 (754)
+...+.|+||||+|+ .++.|+|.|.. ...|+|.|||.||+.+.. .-+|. +-.+.|-
T Consensus 51 ~~hlv~EivdNsiDea~ag~~~~I~V~i~~---------dgsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~ 121 (408)
T 3lnu_A 51 PNHLAQEVIDNSVDEALAGHAKQIEVTLYK---------DGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNN 121 (408)
T ss_dssp THHHHHHHHHHHHHHHHTTSCCEEEEEECT---------TSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC--------
T ss_pred cchhhHHHHHHHHHHhhcCCCceEEEEEeC---------CCeEEEEEcCCCCCcccccccCCcchheEEEecccCCCcCC
Confidence 367899999999999 89999998862 248999999999998873 22232 1111121
Q ss_pred CCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCe--eEE-EeccccCCCCcEEEEEe
Q 004427 320 ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NLE-IPIVSYYRKGQFMELDT 388 (754)
Q Consensus 320 ~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~--~i~-VPi~~~~~~Gt~I~l~l 388 (754)
..-...-|..|+|.+.. -.|+..+.|.+++++. .+.+.|..|.- .+. +-...-...||+|+..+
T Consensus 122 ~~ykvSgGlhGvG~svV-NALS~~l~v~v~rdGk----~~~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~P 188 (408)
T 3lnu_A 122 RNYTFSGGLHGVGVSVV-NALSTKVELFIKREGS----EHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWA 188 (408)
T ss_dssp ------------CHHHH-HHTEEEEEEEEEETTE----EEEEEEETTEECSCCEEEEECCTTCCEEEEEEEE
T ss_pred CceeecCCcccccccee-hhccCeEEEEEEECCE----EEEEEECCCEECCCceEeccCcCCCCCcEEEEEE
Confidence 11235678899999544 4589999999998774 35566655431 111 11111135799988764
No 32
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.07 E-value=2.6e-06 Score=98.70 Aligned_cols=95 Identities=19% Similarity=0.290 Sum_probs=63.7
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-cccCCCCCCCCCccc
Q 004427 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAgAt-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~~~~~IG 327 (754)
.+..+|.|||+||+||+++ .|.|.+... +.+...|+|.|||.||+.+++.+++. |..+.+........|
T Consensus 37 ~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~-----~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~G 111 (621)
T 2q2e_B 37 SLITTVKEAVDNALDACEEAGILPDILVQVERT-----GPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRG 111 (621)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEE-----TTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCS
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEC-----CCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCC
Confidence 4678999999999999875 677766531 11345799999999999999999874 322222111224458
Q ss_pred ccCceeeeecc---cccce-EEEEEeeCCC
Q 004427 328 RFGVGFKTGAM---RLGKD-ALVLTQTADS 353 (754)
Q Consensus 328 qfGvGfKsAsm---rLg~~-v~V~SK~~g~ 353 (754)
..|+|+..+.. .++.. +.|.|+..+.
T Consensus 112 g~GlGLsiv~~ls~~~gG~~I~V~S~~~gg 141 (621)
T 2q2e_B 112 QQGIGISAAVLYAQMTAGRHTKILSKTSPT 141 (621)
T ss_dssp SSSHHHHHHHHHHHHHTCCCCEEEEECSSS
T ss_pred CceechhhhhHHHHHhCCCceeEEeeccCC
Confidence 89999965432 12233 6888887763
No 33
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=97.84 E-value=4.3e-05 Score=76.74 Aligned_cols=146 Identities=19% Similarity=0.224 Sum_probs=82.9
Q ss_pred CHHHHHHHHHhccccc---C-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCccccc
Q 004427 254 WIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 329 (754)
Q Consensus 254 ~pf~AIaELIDNA~DA---g-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqf 329 (754)
-+...+.|||+||+|+ | ++.|.|.|.. ...|+|.|||.||+.+.-. .+ +. .....+ |
T Consensus 31 gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~---------~g~i~V~DnG~Gip~~~h~------~~-~~-~~~e~i--~ 91 (198)
T 3ttz_A 31 GLHHLVWEIVDNSIDEALAGYANQIEVVIEK---------DNWIKVTDNGRGIPVDIQE------KM-GR-PAVEVI--L 91 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEG---------GGEEEEEECSSCCCCSBCT------TT-SS-BHHHHH--H
T ss_pred chHHHHHHHHHHHHhHHhcCCCcEEEEEEeC---------CCeEEEEECCCCccccccC------cC-CC-cccccc--c
Confidence 3678999999999994 7 8999999873 2399999999999986210 00 00 000111 2
Q ss_pred CceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCe--eE-EEeccccCCCCcEEEEEeccccchhhhhhhhhhhhc
Q 004427 330 GVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NL-EIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEF 406 (754)
Q Consensus 330 GvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~--~i-~VPi~~~~~~Gt~I~l~l~~~~e~~~~~~L~~I~ky 406 (754)
+ . ++.=.|+..+.|.+++++. .+.+.|..|.- .. .++ .-...||+|++.+..+ .+. +-
T Consensus 92 t--~-SvVNALS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~~i~--~~~~~GT~V~F~Pd~~-iF~---------~~ 152 (198)
T 3ttz_A 92 T--S-SVVNALSQDLEVYVHRNET----IYHQAYKKGVPQFDLKEVG--TTDKTGTVIRFKADGE-IFT---------ET 152 (198)
T ss_dssp H--T-CHHHHTEEEEEEEEEETTE----EEEEEEETTEESSCCEEEE--ECSCCEEEEEEEECTT-TCC---------SC
T ss_pred e--e-EehhhhcCeEEEEEEECCc----EEEEEEeCCEECCCceecc--CCCCCCcEEEEEECHH-Hhc---------cC
Confidence 2 1 2222577899999998874 35566654432 11 122 2246799998764322 110 11
Q ss_pred CCCchhhHHHhhhccccCCCCcEEEEEeccC
Q 004427 407 SPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 437 (754)
Q Consensus 407 SpF~s~pI~e~~~~~~~~~~GT~IiI~NLrr 437 (754)
.-|...-|...+..++--..|.+|.+.+-+.
T Consensus 153 ~~~~~~~l~~rlrelA~ln~gv~i~l~der~ 183 (198)
T 3ttz_A 153 TVYNYETLQQRIRELAFLNKGIQITLRDERD 183 (198)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTCEEEEEECSS
T ss_pred CccCHHHHHHHHHHHhhcCCCCEEEEEeecC
Confidence 1122222222222222225789999887653
No 34
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.76 E-value=2.9e-05 Score=86.10 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHH--------hhh-c--ccCCC
Q 004427 255 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-F--GHKQP 318 (754)
Q Consensus 255 pf~AIaELIDNA~DAg-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-f--G~S~k 318 (754)
+...+.|+|+||+|+. ++.|.|.|.. +...|+|.|||.||+.+.... .|. + |.+-.
T Consensus 65 L~~lv~EivdNaiDe~~~~g~~~~I~V~i~~--------d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd 136 (418)
T 1pvg_A 65 LFKIFDEILVNAADNKVRDPSMKRIDVNIHA--------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYD 136 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCC
T ss_pred HHHHHHHHHhCHHHHHHhcCCCCEEEEEEEC--------CCCEEEEEECCCcccCcccccCCcccceEEEEEEecccccC
Confidence 5578999999999985 6899999873 225899999999998775322 232 1 22111
Q ss_pred CCCCCCcccccCceeeeecccccceEEEEEee--CCCCceeEEEEEecCCCeeEEEe-cccc--CCCCcEEEEEe
Q 004427 319 DADDPNRIGRFGVGFKTGAMRLGKDALVLTQT--ADSRSIAFLSQSLNQGKDNLEIP-IVSY--YRKGQFMELDT 388 (754)
Q Consensus 319 ~~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~--~g~~sv~~ls~sf~~g~~~i~VP-i~~~--~~~Gt~I~l~l 388 (754)
...-...-|..|+|. ++.=.|+..+.|.+++ ++. .+.+.|..|.....-| +... ...||.|+..+
T Consensus 137 ~~~ykvSGGLhGVG~-SvVNALS~~l~V~v~r~rdGk----~y~q~f~~G~~~~~~p~i~~~~~~~tGT~V~F~P 206 (418)
T 1pvg_A 137 DDEKKVTGGRNGYGA-KLCNIFSTEFILETADLNVGQ----KYVQKWENNMSICHPPKITSYKKGPSYTKVTFKP 206 (418)
T ss_dssp TTSCCCCSCCSSCHH-HHHHHTEEEEEEEEEETTTTE----EEEEEEETTTTEECCCEEEECCSSCCEEEEEEEE
T ss_pred CCceeccCCccceee-eeeeeccceEEEEEEECCCCc----EEEEEEEcCCCccCCCeecccCCCCCceEEEEEE
Confidence 111235678999998 4444589999999985 342 3556775442111111 1111 34789887654
No 35
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.72 E-value=5.5e-05 Score=69.45 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCceee
Q 004427 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGfK 334 (754)
+..+|.+||+||+.+....|.|.+.. ..+.-.|.|.|||.||+.+++.+++.-..+.+.. .+..|+|+.
T Consensus 45 l~~il~nLl~NAi~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~-----~~g~GlGL~ 113 (152)
T 1id0_A 45 FVEVMGNVLDNACKYCLEFVEISARQ------TDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL-----RPGQGVGLA 113 (152)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEEEE------CSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC-----CTTCCSCHH
T ss_pred HHHHHHHHHHHHHHhCcCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHHHhccceeccCC-----CCCcccCHH
Confidence 45789999999999987777777654 3456789999999999999998887644332211 145688875
Q ss_pred eec---ccccceEEEEEee
Q 004427 335 TGA---MRLGKDALVLTQT 350 (754)
Q Consensus 335 sAs---mrLg~~v~V~SK~ 350 (754)
.+- -.+|.++.+.+..
T Consensus 114 i~~~~~~~~gG~i~~~~~~ 132 (152)
T 1id0_A 114 VAREITEQYEGKIVAGESM 132 (152)
T ss_dssp HHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHcCCEEEEEeCC
Confidence 332 2356677766643
No 36
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.62 E-value=9.6e-05 Score=68.93 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCceee
Q 004427 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGfK 334 (754)
+..+|.+||+||+.+....|.|.+.. ..+.-.|.|.|||.||+.+++.+++...++.+.. ...+..|+|++
T Consensus 48 l~~il~nll~NAik~~~~~I~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~---~~~~g~GlGL~ 118 (161)
T 1bxd_A 48 IKRAVANMVVNAARYGNGWIKVSSGT------EPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA---RTISGTGLGLA 118 (161)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEEEEE------ETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC---CCCCCCSCCCC
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC---CCCCCcccCHH
Confidence 45789999999999988888888764 2345679999999999999998887643333221 11245788886
Q ss_pred eec---ccccceEEEEEee
Q 004427 335 TGA---MRLGKDALVLTQT 350 (754)
Q Consensus 335 sAs---mrLg~~v~V~SK~ 350 (754)
.+- -.+|.++.+.+..
T Consensus 119 i~~~~~~~~gG~i~~~~~~ 137 (161)
T 1bxd_A 119 IVQRIVDNHNGMLELGTSE 137 (161)
T ss_dssp TTHHHHHHHTSEEEEEEET
T ss_pred HHHHHHHHcCCEEEEEECC
Confidence 432 2356777776653
No 37
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.45 E-value=0.00014 Score=72.86 Aligned_cols=90 Identities=12% Similarity=0.141 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCccccc
Q 004427 255 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 329 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqf 329 (754)
+..+|..||+||+++... .|.|.+.. ..+.-.|.|.|||.||+.+++.+++.-.++.+.. .....+..
T Consensus 139 l~~il~NLl~NAik~~~~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~~G~ 211 (258)
T 2c2a_A 139 IRQVLLNLLNNGVKYSKKDAPDKYVKVILDE------KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSS-LTYEVPGT 211 (258)
T ss_dssp HHHHHHHHHHHHHHTCCTTCTTCEEEEEEEE------ETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC----------C
T ss_pred HHHHHHHHHHHHHhcCcCCCCceeEEEEEec------CCCeEEEEEEecCCCCCHHHHHhhccccccCCCC-CCCCCCCc
Confidence 457889999999998542 35665543 2345679999999999999999888633332211 11122346
Q ss_pred Cceeeeec---ccccceEEEEEeeC
Q 004427 330 GVGFKTGA---MRLGKDALVLTQTA 351 (754)
Q Consensus 330 GvGfKsAs---mrLg~~v~V~SK~~ 351 (754)
|+|+..+- -..|..+.|.|...
T Consensus 212 GLGL~i~~~iv~~~gG~i~v~s~~~ 236 (258)
T 2c2a_A 212 GLGLAITKEIVELHGGRIWVESEVG 236 (258)
T ss_dssp CCTHHHHHHHHHHTTCEEEEEEETT
T ss_pred chHHHHHHHHHHHcCCEEEEEecCC
Confidence 88875322 24577777777543
No 38
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.43 E-value=0.00024 Score=65.31 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcccccCCC-ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCcee
Q 004427 255 IFGAIAELVDNSRDAKAT-KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt-~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGf 333 (754)
+..+|.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+.+++.+++.-..+... ...+..|+|+
T Consensus 47 l~~il~nLl~NA~~~~~~~~I~i~~~~------~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~----~~~~g~GlGL 116 (150)
T 1ysr_A 47 LRLAVDNAIANAVKHGGATLVQLSAVS------SRAGVEIAIDDNGSGVPEGERQVVFERFSRGST----ASHSGSGLGL 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEEEE------ETTEEEEEEEESSSCCCGGGHHHHHTSCC---------------CCC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEe------cCCEEEEEEEECCCCCCHHHHHHHhcccccCCC----CCCCCCCcCH
Confidence 457899999999998643 55555543 234578999999999999999998763332111 1123468887
Q ss_pred eeec---ccccceEEEEEee
Q 004427 334 KTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 334 KsAs---mrLg~~v~V~SK~ 350 (754)
..+- -.+|.++.+.+..
T Consensus 117 ~i~~~~~~~~gG~i~~~~~~ 136 (150)
T 1ysr_A 117 ALVAQQAQLHGGTASLENSP 136 (150)
T ss_dssp HHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHcCCEEEEeecC
Confidence 5332 2356677776643
No 39
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.33 E-value=8.4e-05 Score=71.31 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcccccC--------------CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhH
Q 004427 255 IFGAIAELVDNSRDAK--------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 307 (754)
Q Consensus 255 pf~AIaELIDNA~DAg--------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL 307 (754)
+..+|.+||+||+.++ ...|.|.+.. ..+.-.|.|.|||.||+.+++
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~~ 108 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKI 108 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEE------ETTEEEEEEEECSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHH
Confidence 3456999999999985 3456666653 234678999999999999987
No 40
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.33 E-value=0.00029 Score=70.55 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004427 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvG 332 (754)
+..+|.+||+||+++.. ..|.|.+.. ..+.-.|.|.|||.||+.+++.+++....+.+. +..|+|
T Consensus 156 l~~il~nLl~NA~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~-------~g~GlG 222 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPPGGRVTLSARR------ALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR-------GGPGLG 222 (268)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEEEEEE------CSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS-------CCCTTH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEe------cCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC-------CCCccc
Confidence 55789999999999965 466666653 345678999999999999999888764433221 346888
Q ss_pred eeeec---ccccceEEEEEee
Q 004427 333 FKTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 333 fKsAs---mrLg~~v~V~SK~ 350 (754)
++.+- -.+|..+.+.+..
T Consensus 223 L~i~~~~~~~~gG~i~i~s~~ 243 (268)
T 4ew8_A 223 LALVKALVELHGGWVALESEP 243 (268)
T ss_dssp HHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 75432 2457777776653
No 41
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.32 E-value=0.00019 Score=78.19 Aligned_cols=90 Identities=14% Similarity=0.269 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCC----
Q 004427 255 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 321 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA---------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~---- 321 (754)
+..+|.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+++...++.+...
T Consensus 244 L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~ 317 (407)
T 2q8g_A 244 LYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTL------GNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVET 317 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccc
Confidence 44689999999999843 268887764 34567899999999999999999987554433210
Q ss_pred -CCCcccccCceeeeec---ccccceEEEEEee
Q 004427 322 -DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 322 -~~~~IGqfGvGfKsAs---mrLg~~v~V~SK~ 350 (754)
.....+.+|+|+..+- -..|.++.|.|..
T Consensus 318 ~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~ 350 (407)
T 2q8g_A 318 SRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLE 350 (407)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcC
Confidence 1234567899985332 2357777777754
No 42
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.29 E-value=0.00022 Score=77.37 Aligned_cols=90 Identities=19% Similarity=0.277 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCC-----
Q 004427 255 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA----- 320 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA---------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~----- 320 (754)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+..
T Consensus 231 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~ 304 (394)
T 2e0a_A 231 LHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVL------GKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDN 304 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEE------CSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC----
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEe------CCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCc
Confidence 44688999999999843 258887764 3456789999999999999999998755543321
Q ss_pred CCCCcccccCceeeeec---ccccceEEEEEee
Q 004427 321 DDPNRIGRFGVGFKTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 321 ~~~~~IGqfGvGfKsAs---mrLg~~v~V~SK~ 350 (754)
......+.+|+|+..+- -..|.++.|.|..
T Consensus 305 ~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2e0a_A 305 SRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLS 337 (394)
T ss_dssp --CCCSSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCCCcccCHHHHHHHHHHhCCEEEEEecC
Confidence 02234567899985332 2357777777754
No 43
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.26 E-value=0.00031 Score=64.70 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=51.9
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccc
Q 004427 254 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAgA-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGq 328 (754)
.+..+|.|||+||+.++. ..|.|.+.. ..+.-.|.|.|||.||+ ++.+.+.-..+.+. ..+.
T Consensus 39 ~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~-----~~~~ 105 (145)
T 1th8_A 39 EIKTVVSEAVTNAIIHGYNNDPNGIVSISVII------EDGVVHLTVRDEGVGIP--DIEEARQPLFTTKP-----ELER 105 (145)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEE------ETTEEEEEEEECSSCCS--CHHHHTCCC------------CC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE------eCCEEEEEEEECCCCcC--hHHHhhcccccCCC-----CCCC
Confidence 356899999999998863 566666653 23467899999999999 67776653333221 1234
Q ss_pred cCceeeeecccccceEEEEEe
Q 004427 329 FGVGFKTGAMRLGKDALVLTQ 349 (754)
Q Consensus 329 fGvGfKsAsmrLg~~v~V~SK 349 (754)
.|+|+..+- ++.+.+.+.+.
T Consensus 106 ~GlGL~iv~-~~~~~i~~~~~ 125 (145)
T 1th8_A 106 SGMGFTIME-NFMDEVIVESE 125 (145)
T ss_dssp CSCHHHHHH-HHSSEEEEEEE
T ss_pred CcchHHHHH-HHHheEEEEeC
Confidence 588885433 34445655554
No 44
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.26 E-value=0.00039 Score=68.18 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004427 255 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNA~DAg--At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvG 332 (754)
+..+|.+||+||+.+. +..|.|.+.. ..+.-.|.|.|||.||+.+++.+++....+.+ ..+..|+|
T Consensus 124 l~~il~nLl~NA~~~~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~------~~~g~GlG 191 (244)
T 3d36_A 124 FRQCLLNVMKNAIEAMPNGGTLQVYVSI------DNGRVLIRIADTGVGMTKEQLERLGEPYFTTK------GVKGTGLG 191 (244)
T ss_dssp HHHHHHHHHHHHHHTCTTCEEEEEEEEE------ETTEEEEEEEECSSCCCHHHHHHTTSTTCCSS------GGGCCSCH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEEE------eCCEEEEEEEecCCCCCHHHHHHHhcccccCC------CCCCcchh
Confidence 5578999999999996 4566666653 23567899999999999999998876444332 12346888
Q ss_pred eeeec---ccccceEEEEEeeC
Q 004427 333 FKTGA---MRLGKDALVLTQTA 351 (754)
Q Consensus 333 fKsAs---mrLg~~v~V~SK~~ 351 (754)
+..+- -.+|..+.+.+...
T Consensus 192 L~i~~~i~~~~gG~i~~~~~~~ 213 (244)
T 3d36_A 192 MMVVYRIIESMNGTIRIESEIH 213 (244)
T ss_dssp HHHHHHHHHHTTCEEEEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 75432 24577777777533
No 45
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.24 E-value=0.00022 Score=78.17 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcccccCC----------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCC----
Q 004427 255 IFGAIAELVDNSRDAKA----------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA---- 320 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA----------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~---- 320 (754)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+..
T Consensus 254 L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~ 327 (419)
T 1y8o_A 254 LFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTL------GKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLE 327 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCcc
Confidence 44688999999999843 268887764 3456689999999999999999998754443321
Q ss_pred -CCCCcccccCceeeeec---ccccceEEEEEee
Q 004427 321 -DDPNRIGRFGVGFKTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 321 -~~~~~IGqfGvGfKsAs---mrLg~~v~V~SK~ 350 (754)
......+-+|+|+..+- -..|.++.|.|..
T Consensus 328 ~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~ 361 (419)
T 1y8o_A 328 PTRAAPLAGFGYGLPISRLYARYFQGDLKLYSME 361 (419)
T ss_dssp -----CC--CTTHHHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecC
Confidence 01233566899985332 2357777777754
No 46
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.22 E-value=0.00022 Score=65.05 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004427 255 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNA~DAg--At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvG 332 (754)
+..+|.+||+||+.+. ...|.|.+.. ..+.-.|.|.|||.||+.+++.+++....+.+ -+..|+|
T Consensus 48 l~~il~nll~NAi~~~~~~~~I~i~~~~------~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~-------~~g~GlG 114 (152)
T 3a0y_A 48 IKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK-------TQGTGLG 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEEE------CSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC---------CCCCS
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHhHhhhhccCC-------CCCCCcC
Confidence 4578999999999985 4566666653 34567899999999999999988875433322 1346888
Q ss_pred eeeec--c--cccceEEEEEe
Q 004427 333 FKTGA--M--RLGKDALVLTQ 349 (754)
Q Consensus 333 fKsAs--m--rLg~~v~V~SK 349 (754)
++.+- + ..|..+.+.+.
T Consensus 115 L~i~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 115 LSICRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp HHHHHHHHHTTTSCEEEEEEE
T ss_pred HHHHHHHHHHhCCcEEEEecC
Confidence 86432 2 46777776664
No 47
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.21 E-value=0.00015 Score=78.26 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcccccCC----------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCC---
Q 004427 255 IFGAIAELVDNSRDAKA----------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD--- 321 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA----------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~--- 321 (754)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+++...++.+...
T Consensus 239 L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~ 312 (388)
T 1gkz_A 239 LDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN------NDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQD 312 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEE------CSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC------
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEe------CCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccc
Confidence 55789999999999942 168887764 34567899999999999999999887444433210
Q ss_pred ----------------CCCcccccCceeeeec---ccccceEEEEEee
Q 004427 322 ----------------DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 322 ----------------~~~~IGqfGvGfKsAs---mrLg~~v~V~SK~ 350 (754)
.....+.+|+|+..+- -..|.++.|.|..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~ 360 (388)
T 1gkz_A 313 PRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQ 360 (388)
T ss_dssp -------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred cccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 1123456888885332 2457788887764
No 48
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.19 E-value=0.00024 Score=76.92 Aligned_cols=90 Identities=14% Similarity=0.288 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCC----
Q 004427 255 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 321 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA---------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~---- 321 (754)
+..+|.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+++...++.+...
T Consensus 232 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~ 305 (394)
T 2btz_A 232 LYHMLFELFKNAMRATVESHESSLILPPIKVMVAL------GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGT 305 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC------
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEe------CCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCccc
Confidence 44689999999999842 248887764 34567899999999999999999987554433210
Q ss_pred CCCcccccCceeeeec---ccccceEEEEEee
Q 004427 322 DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 322 ~~~~IGqfGvGfKsAs---mrLg~~v~V~SK~ 350 (754)
.....+.+|+|+..+- -..|.++.|.|..
T Consensus 306 ~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2btz_A 306 GGTPLAGFGYGLPISRLYAKYFQGDLQLFSME 337 (394)
T ss_dssp --------CCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 1233566889985332 2457777777754
No 49
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.19 E-value=0.0002 Score=69.23 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCceee
Q 004427 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGfK 334 (754)
+..+|.+||+||+.+....-.|.|... ...|.|.|||.||+.+++.+.+....+.+. ...+..|+|+.
T Consensus 118 l~~il~nLl~NAi~~~~~~~~i~i~~~--------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~~g~GlGL~ 185 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSPQGSVVDVTLN--------ADNFIVRDNGPGVTPEALARIGERFYRPPG----QTATGSGLGLS 185 (222)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEEC--------SSEEEEECSCC------------------------------CTHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEc--------cCeEEEEECCCCCCHHHHHHHHhhhccCCC----CCCCcccccHH
Confidence 457899999999999765544555431 123999999999999999888763333221 12235688875
Q ss_pred eec---ccccceEEEEEe
Q 004427 335 TGA---MRLGKDALVLTQ 349 (754)
Q Consensus 335 sAs---mrLg~~v~V~SK 349 (754)
.+- -.+|.++.|.|.
T Consensus 186 i~~~i~~~~gG~i~i~s~ 203 (222)
T 3jz3_A 186 IVQRIAKLHGMNVEFGNA 203 (222)
T ss_dssp HHHHHHHHTTCEEECCBC
T ss_pred HHHHHHHHcCCEEEEEcC
Confidence 332 134555555544
No 50
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.13 E-value=0.00035 Score=66.24 Aligned_cols=92 Identities=17% Similarity=0.279 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004427 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvG 332 (754)
+..+|.+||+||+++.. ..+.|.+... ...+.-.|.|.|||.||+.+++.+++....+.... .....+..|+|
T Consensus 44 l~~il~nLl~NAi~~~~~~~~i~I~i~~~----~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~-~~~~~~g~GlG 118 (177)
T 3sl2_A 44 ITQVLDNIISNALKYSPEGGHVTFSIDVN----EEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKA-RTRKLGGTGLG 118 (177)
T ss_dssp HHHHHHHHHHHHHHTCCTTCCEEEEEEEE----TTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC-------CCCCCCH
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEEc----cCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCC-CCCCCCCCCcC
Confidence 45689999999999864 4566666321 13345679999999999999998887643332211 12233467888
Q ss_pred eeeec---ccccceEEEEEeeC
Q 004427 333 FKTGA---MRLGKDALVLTQTA 351 (754)
Q Consensus 333 fKsAs---mrLg~~v~V~SK~~ 351 (754)
++.+- -.+|..+.+.+...
T Consensus 119 L~iv~~~~~~~~G~i~i~~~~~ 140 (177)
T 3sl2_A 119 LAIAKEMVQAHGGDIWADSIEG 140 (177)
T ss_dssp HHHHHHHHHHTTCCEEEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 76432 24567777766543
No 51
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.06 E-value=0.00075 Score=60.33 Aligned_cols=69 Identities=19% Similarity=0.291 Sum_probs=50.4
Q ss_pred CHHHHHHHHHhcccccC-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004427 254 WIFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAg-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvG 332 (754)
.+..++.|||+||+.+. +..|.|.+.. ..+ -.|.|.|||.||+.++ .|+|
T Consensus 43 ~l~~il~nll~NA~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~----------------------~GlG 93 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHAAASTLTVRVKV------DDD-LCIEVTDNGRGMPDEF----------------------TGSG 93 (129)
T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEEEE------SSE-EEEEEEECCCCCTTTT----------------------CSHH
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEE------cCC-EEEEEecCCCCCCccc----------------------CCcC
Confidence 36688999999999986 6778887764 334 7899999999998765 3778
Q ss_pred eeeec---ccccceEEEEEeeC
Q 004427 333 FKTGA---MRLGKDALVLTQTA 351 (754)
Q Consensus 333 fKsAs---mrLg~~v~V~SK~~ 351 (754)
+..+. -.+|.++.+.+...
T Consensus 94 L~i~~~~~~~~gG~i~~~~~~~ 115 (129)
T 3zxo_A 94 LTNLRQRAEQAGGEFTLASMPG 115 (129)
T ss_dssp HHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHcCCEEEEeeCCC
Confidence 75322 24566777766544
No 52
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=96.98 E-value=0.00017 Score=66.24 Aligned_cols=89 Identities=12% Similarity=0.132 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcccccC---CCccEEEEEeccccc----CCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCccc
Q 004427 255 IFGAIAELVDNSRDAK---ATKLEISIESIYFKK----AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 327 (754)
Q Consensus 255 pf~AIaELIDNA~DAg---At~V~I~I~~~~~~~----~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IG 327 (754)
+..+|.+||+||+.+. +..|.|.+....+.. .....-.|.|.|||.||+.+++.+.+....+.+. +
T Consensus 49 l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~-------~ 121 (160)
T 1r62_A 49 IEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE-------G 121 (160)
T ss_dssp HHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC-------------------------
T ss_pred HHHHHHHHHHHHHHHhhccCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-------C
Confidence 5578999999999985 456776665311000 0000457899999999999999888754333221 3
Q ss_pred ccCceeeeec---ccccceEEEEEee
Q 004427 328 RFGVGFKTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 328 qfGvGfKsAs---mrLg~~v~V~SK~ 350 (754)
..|+|++.+- -.+|.++.+.+..
T Consensus 122 g~GlGL~i~~~~~~~~gG~l~i~s~~ 147 (160)
T 1r62_A 122 GTGLGLSIARNLIDQHSGKIEFTSWP 147 (160)
T ss_dssp --CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCccCHHHHHHHHHHCCCeEEEEeCC
Confidence 4688875332 2457777776654
No 53
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=96.97 E-value=0.00034 Score=63.26 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCcee
Q 004427 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (754)
Q Consensus 255 pf~AIaELIDNA~DAg-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGf 333 (754)
+..++.||++||+.+. +..|.|.+.. ..+.-.|.|.|||.||+++++ +..|+|+
T Consensus 41 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~-------------------~g~GlGL 95 (128)
T 3ehg_A 41 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS-------------------FSKGHGL 95 (128)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCSCSSC-------------------CCTTSHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEE------eCCEEEEEEEECCcCcCcccC-------------------CCCCccH
Confidence 4578999999999875 5678887764 234578999999999987764 2247887
Q ss_pred eeec---ccccceEEEEEee
Q 004427 334 KTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 334 KsAs---mrLg~~v~V~SK~ 350 (754)
..+. -.+|.++.+.|..
T Consensus 96 ~~~~~~~~~~gG~i~~~s~~ 115 (128)
T 3ehg_A 96 LGMRERLEFANGSLHIDTEN 115 (128)
T ss_dssp HHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHcCCEEEEEeCC
Confidence 5322 2356667666654
No 54
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.95 E-value=0.00076 Score=73.12 Aligned_cols=88 Identities=16% Similarity=0.242 Sum_probs=53.7
Q ss_pred HHHHHHHHhcccccC------------C--CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHH-------------
Q 004427 256 FGAIAELVDNSRDAK------------A--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV------------- 308 (754)
Q Consensus 256 f~AIaELIDNA~DAg------------A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~------------- 308 (754)
..+|.+||.||++++ . ..|.|.+.. .++.-.|.|.|||.||+++.+.
T Consensus 108 ~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~------~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~ 181 (379)
T 1b3q_A 108 GEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESK 181 (379)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE------ETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTT
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhh
Confidence 356899999999997 2 345555543 2346689999999999999873
Q ss_pred -----------HhhhcccCCCCCCCCCcccccCceeeee---cccccceEEEEEeeC
Q 004427 309 -----------RMTYFGHKQPDADDPNRIGRFGVGFKTG---AMRLGKDALVLTQTA 351 (754)
Q Consensus 309 -----------~~l~fG~S~k~~~~~~~IGqfGvGfKsA---smrLg~~v~V~SK~~ 351 (754)
..|.-|++.+. .....+-.|+|+..+ .-.+|..+.|.|...
T Consensus 182 ~~~~~~~~~~~~iF~p~fst~~--~~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g 236 (379)
T 1b3q_A 182 AATLSDQEILNFLFVPGFSTKE--KVSEVSGRGVGMDVVKNVVESLNGSMGIESEKD 236 (379)
T ss_dssp TTTSCTHHHHSGGGSTTCC-------------CCCSHHHHHHHHHTTCEEEEEEETT
T ss_pred hhcCCHHHHHHHhcCCCCccCC--ccCCCCCccccHHHHHHHHHHCCCEEEEEEcCC
Confidence 34444444432 123345578888532 225678888887643
No 55
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=96.81 E-value=0.00081 Score=65.32 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCcee
Q 004427 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (754)
Q Consensus 255 pf~AIaELIDNA~DAg-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGf 333 (754)
+..++.||++||+.++ +..|.|.+.. ..+.-.|.|.|||.||+++.+ +..|+|+
T Consensus 131 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~-------------------~g~GlGL 185 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS-------------------FSKGHGL 185 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCC---------------------------CHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEE------eCCEEEEEEEECCcCCCCCCC-------------------CCCCCCH
Confidence 4568999999999874 4677777764 335678999999999999875 1247777
Q ss_pred eeec---ccccceEEEEEee
Q 004427 334 KTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 334 KsAs---mrLg~~v~V~SK~ 350 (754)
..+- -.+|..+.|.|..
T Consensus 186 ~~~~~~v~~~gG~i~~~s~~ 205 (218)
T 3ehh_A 186 LGMRERLEFANGSLHIDTEN 205 (218)
T ss_dssp HHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHcCCEEEEeCCC
Confidence 4321 2456777776654
No 56
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.59 E-value=0.0011 Score=68.45 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004427 255 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNA~DAg--At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvG 332 (754)
+..+|.+||+||+++. +..|.|.+.. ..+.-.|.|.|||.||+++++.+.+...++.+. +..|+|
T Consensus 245 l~~vl~nLl~NA~k~~~~~~~i~i~~~~------~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~-------~g~GlG 311 (349)
T 3a0r_A 245 IKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT-------QGTGLG 311 (349)
T ss_dssp HHHHHHHHHTHHHHTTCTTCCEEEEEEE------ETTEEEEEEEEESCCCCGGGGTTTSSSCCCC-------------CC
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEEEe------cCCEEEEEEEECCCCCChHHHhhcCCCCccCCC-------CCccch
Confidence 5678999999999996 4677777664 235678999999999999999888764443331 235888
Q ss_pred eeeec--c--cccceEEEEEe
Q 004427 333 FKTGA--M--RLGKDALVLTQ 349 (754)
Q Consensus 333 fKsAs--m--rLg~~v~V~SK 349 (754)
+..+- + ..|..+.+.+.
T Consensus 312 L~i~~~~v~~~~gg~i~~~~~ 332 (349)
T 3a0r_A 312 LSICRKIIEDEHGGKIWTENR 332 (349)
T ss_dssp CTHHHHHHHHTTCSBCCEEEC
T ss_pred HHHHHHHHHHhCCCEEEEEeC
Confidence 75331 1 35666666554
No 57
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=95.87 E-value=0.0057 Score=54.25 Aligned_cols=46 Identities=26% Similarity=0.368 Sum_probs=36.6
Q ss_pred CHHHHHHHHHhcccccC-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHh
Q 004427 254 WIFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 306 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAg-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee 306 (754)
.+..++.||++||+.+. +..|.|.+.. ..+ -.|.|.|||.||+.++
T Consensus 39 ~l~~il~nll~Na~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 39 HAEAVLREAVSNAVRHANATSLAINVSV------EDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEEEEE------EEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEEe------CCC-EEEEEEECCCCCCccc
Confidence 35678999999999985 4577777764 234 7899999999999876
No 58
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.03 Score=69.34 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=53.8
Q ss_pred HHHHHHHHHhccccc---C-C-CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHh--------HHHhhh-cccCCCC-
Q 004427 255 IFGAIAELVDNSRDA---K-A-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPD- 319 (754)
Q Consensus 255 pf~AIaELIDNA~DA---g-A-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-fG~S~k~- 319 (754)
+...+.|+||||+|. | + +.|+|.|.. +...|+|.|||.||+-+. +.-.|+ +-.+.|-
T Consensus 60 L~hl~~EildNsiDea~ag~~~~~I~V~i~~--------~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd 131 (1177)
T 4gfh_A 60 LFKIFDEILVNAADNKVRDPSMKRIDVNIHA--------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYD 131 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCC
T ss_pred eeeEeeEEEEChHhHHhhCCCCCeEEEEEEC--------CCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcC
Confidence 446789999999994 3 2 678888862 246899999999998542 111222 1111121
Q ss_pred -CCCCCcccccCceeeeecccccceEEEEEe
Q 004427 320 -ADDPNRIGRFGVGFKTGAMRLGKDALVLTQ 349 (754)
Q Consensus 320 -~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK 349 (754)
..-...-|..|+|.+ +.=.|+..+.|.+.
T Consensus 132 ~~~ykvSGGLHGVG~s-vVNALS~~~~vev~ 161 (1177)
T 4gfh_A 132 DDEKKVTGGRNGYGAK-LCNIFSTEFILETA 161 (1177)
T ss_dssp CSSCCCCSCCSSCHHH-HHHHTEEEEEEEEE
T ss_pred CCCCeEeccCCChhhh-HHhhcCCceEEEEE
Confidence 111345689999984 33346777766654
No 59
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=93.20 E-value=0.012 Score=69.92 Aligned_cols=46 Identities=41% Similarity=0.859 Sum_probs=37.3
Q ss_pred CceeeCc--cchhhccCCCCCC-CCCCCCCceecCCCC-------CCCCCCCcccc
Q 004427 644 QEWVQCN--KCRKWRMLDPGFD-TKSLPVEWFCYMKPF-------EGLCDLPEQKV 689 (754)
Q Consensus 644 ~~WVQCd--~C~KWR~Lp~~~~-~~~lp~~W~C~mn~~-------~~sC~~pEe~~ 689 (754)
.-|+||- .|.|||+||...+ ...++.+..|.|-.+ ...|+.||+.-
T Consensus 91 ~~~~~c~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 146 (776)
T 4gut_A 91 PYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKPETSDHCSLPEDLR 146 (776)
T ss_dssp CCEEECCCTTTCCEEECCTTCCCCHHHHHHCCTTCCCC-------CCGGGSCCCHH
T ss_pred cHhhhcCcccccchhhCCCcCCCChhhhheeeccCccCcccccccCCCCCCCcccc
Confidence 4899999 9999999998865 356788999998642 36799999843
No 60
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=92.86 E-value=0.1 Score=52.64 Aligned_cols=82 Identities=9% Similarity=-0.088 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCcCEEEEEeCCCC--CCHHhHHHhhhcccCCCCCCCCCcccccC
Q 004427 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHG--MTHQDVVRMTYFGHKQPDADDPNRIGRFG 330 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~G--Mt~eeL~~~l~fG~S~k~~~~~~~IGqfG 330 (754)
...++.-||+||++|.. ..|.|.+.. ..+...|.|.|+|.| |+++.+.+.+.-..+. ..+-.|
T Consensus 147 ~~qvl~NLl~NA~~a~~~gg~I~v~~~~------~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~-------~~~G~G 213 (247)
T 4fpp_A 147 SSRAVLNIAQIAASALPAGGVATVKGVA------ADGRFSIIADAKGPRARLRPEVLAGLKGEPLAE-------GLGGPW 213 (247)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEEEEE------ETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCS-------SCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEEE------ECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCC-------CCCCcc
Confidence 44678899999999954 456766654 345678999999977 6666566654321111 122348
Q ss_pred ceeeee---cccccceEEEEEe
Q 004427 331 VGFKTG---AMRLGKDALVLTQ 349 (754)
Q Consensus 331 vGfKsA---smrLg~~v~V~SK 349 (754)
+|+..+ .-..|..+.|.|.
T Consensus 214 LGLai~~~iv~~hGG~i~v~s~ 235 (247)
T 4fpp_A 214 VQAAYLNALVRAAGGQIAVEIG 235 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEEc
Confidence 887532 1245777777664
No 61
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=92.47 E-value=0.063 Score=44.94 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=25.4
Q ss_pred CCceeeCccchhhccCC-CCCCCCCCCCCceec
Q 004427 643 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCY 674 (754)
Q Consensus 643 ~~~WVQCd~C~KWR~Lp-~~~~~~~lp~~W~C~ 674 (754)
...+||||.|..|-.+. .++....+|+.|+|.
T Consensus 30 ~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~ 62 (68)
T 3o70_A 30 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 62 (68)
T ss_dssp TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCH
T ss_pred CCCEEECCCCCccccccccCcCcccCCCcEECC
Confidence 45799999999998887 345445678999995
No 62
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=91.65 E-value=0.066 Score=42.26 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=25.5
Q ss_pred CCceeeCccchhhccCC-CCCCCCCCCCCceec
Q 004427 643 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCY 674 (754)
Q Consensus 643 ~~~WVQCd~C~KWR~Lp-~~~~~~~lp~~W~C~ 674 (754)
...+||||.|..|-.+. .++....+|+.|+|.
T Consensus 15 ~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~ 47 (52)
T 3o7a_A 15 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 47 (52)
T ss_dssp TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCH
T ss_pred CCCEEEcCCCCccccccccCCCcccCCCcEECc
Confidence 45899999999998887 345445678999995
No 63
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=90.86 E-value=0.12 Score=42.14 Aligned_cols=36 Identities=19% Similarity=0.504 Sum_probs=24.6
Q ss_pred CCCCCceeeCccchhhccCC-CCCCC--CCCCCCceecC
Q 004427 640 YKPDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 675 (754)
Q Consensus 640 ~~~~~~WVQCd~C~KWR~Lp-~~~~~--~~lp~~W~C~m 675 (754)
+.+...|||||.|..|-+.. .++.. ...++.|+|..
T Consensus 16 ~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 54 (64)
T 1we9_A 16 YAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPS 54 (64)
T ss_dssp CCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHH
T ss_pred cCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCC
Confidence 33457899999999997765 23332 23468999853
No 64
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.99 E-value=0.2 Score=42.02 Aligned_cols=31 Identities=23% Similarity=0.848 Sum_probs=23.5
Q ss_pred CceeeCccchhhccCCC-CCC-CCCCCCCceec
Q 004427 644 QEWVQCNKCRKWRMLDP-GFD-TKSLPVEWFCY 674 (754)
Q Consensus 644 ~~WVQCd~C~KWR~Lp~-~~~-~~~lp~~W~C~ 674 (754)
..|||||.|..|-++.= ++. ...+|++|+|.
T Consensus 29 ~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~ 61 (72)
T 1wee_A 29 ERMLACDGCGVWHHTRCIGINNADALPSKFLCF 61 (72)
T ss_dssp SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCH
T ss_pred CcEEECCCCCCccCCeeeccCccccCCCcEECC
Confidence 47999999999987762 333 23578999995
No 65
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=89.80 E-value=0.16 Score=45.38 Aligned_cols=33 Identities=30% Similarity=0.815 Sum_probs=26.0
Q ss_pred CCceeeCccchhhccCC-CCCCCCCCCCCceecC
Q 004427 643 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCYM 675 (754)
Q Consensus 643 ~~~WVQCd~C~KWR~Lp-~~~~~~~lp~~W~C~m 675 (754)
...+||||.|.+|-.+. .++....+|+.|+|..
T Consensus 39 ~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~ 72 (98)
T 2lv9_A 39 DGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCER 72 (98)
T ss_dssp SSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTT
T ss_pred CCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCC
Confidence 45899999999998876 3444467889999964
No 66
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=88.18 E-value=0.36 Score=52.49 Aligned_cols=47 Identities=26% Similarity=0.322 Sum_probs=33.9
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHH
Q 004427 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAg-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (754)
.+..++.||+.||+..+ ...|.|.+... ..+.-.|.|.|+|.|++..
T Consensus 297 ~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~-----~~~~l~i~V~D~G~g~~~~ 348 (399)
T 3ke6_A 297 DIVHAISEFVENAVEHGYATDVSKGIVVAAALA-----GDGNVRASVIDRGQWKDHR 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEEC-----TTSEEEEEEEESCBC----
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEc-----CCCEEEEEEEECCCCCCCC
Confidence 45689999999999986 56788877641 1235789999999999875
No 67
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=83.91 E-value=0.18 Score=39.79 Aligned_cols=35 Identities=26% Similarity=0.702 Sum_probs=23.6
Q ss_pred CCCCCceeeCc-cchhhccCCC-CCCCC-CCCCCceec
Q 004427 640 YKPDQEWVQCN-KCRKWRMLDP-GFDTK-SLPVEWFCY 674 (754)
Q Consensus 640 ~~~~~~WVQCd-~C~KWR~Lp~-~~~~~-~lp~~W~C~ 674 (754)
|.++..||||| .|.+|=++.= ++... ..+++|+|.
T Consensus 12 ~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~ 49 (52)
T 2kgg_A 12 CKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICI 49 (52)
T ss_dssp CCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCS
T ss_pred cCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECC
Confidence 44567899999 8999977652 33211 124789985
No 68
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=81.37 E-value=0.36 Score=40.81 Aligned_cols=35 Identities=14% Similarity=0.392 Sum_probs=23.4
Q ss_pred CCCCceeeCccchhhccCC-CCCCCC--CCCCCceecC
Q 004427 641 KPDQEWVQCNKCRKWRMLD-PGFDTK--SLPVEWFCYM 675 (754)
Q Consensus 641 ~~~~~WVQCd~C~KWR~Lp-~~~~~~--~lp~~W~C~m 675 (754)
-++..|||||.|..|=... .++... ..++.|+|..
T Consensus 20 ~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~ 57 (75)
T 3kqi_A 20 DVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPN 57 (75)
T ss_dssp CTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHH
T ss_pred CCCCCEEEcCCCCCCEecccccccccccCCCCEEECCC
Confidence 3467999999999997654 122222 2347899863
No 69
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.52 E-value=0.2 Score=42.78 Aligned_cols=33 Identities=15% Similarity=0.383 Sum_probs=22.7
Q ss_pred CCCceeeCccchhhccCC-CCCCC--CCCCCCceec
Q 004427 642 PDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCY 674 (754)
Q Consensus 642 ~~~~WVQCd~C~KWR~Lp-~~~~~--~~lp~~W~C~ 674 (754)
....|||||.|..|=+.. .++.. ...++.|+|.
T Consensus 23 ~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 58 (79)
T 1wep_A 23 VNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCP 58 (79)
T ss_dssp SSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCT
T ss_pred CCCceEEcCCCCCcEEeeecCcccccccCCCeEECC
Confidence 367899999999996553 12221 2346899996
No 70
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=77.31 E-value=1.3 Score=36.76 Aligned_cols=32 Identities=22% Similarity=0.803 Sum_probs=23.8
Q ss_pred CCceeeCc--cchhhccCC-CCC-----CCCCCCCCceec
Q 004427 643 DQEWVQCN--KCRKWRMLD-PGF-----DTKSLPVEWFCY 674 (754)
Q Consensus 643 ~~~WVQCd--~C~KWR~Lp-~~~-----~~~~lp~~W~C~ 674 (754)
+..+|||| .|..|-+.. .++ ....+|++|||.
T Consensus 21 ~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~ 60 (68)
T 2rsd_A 21 NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCE 60 (68)
T ss_dssp CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCH
T ss_pred CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECc
Confidence 45899999 599999877 233 224578899995
No 71
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=76.20 E-value=1.3 Score=43.96 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=25.6
Q ss_pred CCccEEEEEecccccCC--CCcCEEEEEeCCCCCCHHhHHHhhh
Q 004427 271 ATKLEISIESIYFKKAG--KDIPMLSIIDDGHGMTHQDVVRMTY 312 (754)
Q Consensus 271 At~V~I~I~~~~~~~~~--~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (754)
...|.|.+.. . ++...|.|.|+|.|++.+.+.+++.
T Consensus 130 ~~~I~i~i~~------~~~~~~l~i~V~d~G~~i~~e~~~~if~ 167 (192)
T 1ixm_A 130 ENHLTVSLQT------DHPDRQLILYLDFHGAFADPSAFDDIRQ 167 (192)
T ss_dssp CCEEEEEEEC------CCSSSSCEEEEEEESCBSCGGGCC----
T ss_pred CCeEEEEEEE------ecCCCEEEEEEEeCCCCCCHHHHHHHHh
Confidence 4678887763 2 3578899999999999988777764
No 72
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=74.69 E-value=0.79 Score=38.44 Aligned_cols=32 Identities=22% Similarity=0.724 Sum_probs=20.5
Q ss_pred CCceeeCccchhhccCC-CCCCCCC-CCCCceec
Q 004427 643 DQEWVQCNKCRKWRMLD-PGFDTKS-LPVEWFCY 674 (754)
Q Consensus 643 ~~~WVQCd~C~KWR~Lp-~~~~~~~-lp~~W~C~ 674 (754)
...|||||.|..|=.+. .++.... ..+.|+|.
T Consensus 30 ~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~ 63 (75)
T 2k16_A 30 GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCP 63 (75)
T ss_dssp SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCT
T ss_pred CCCEEEcCCCCcccccccCCCCccCCCCCCEECh
Confidence 34799999999996543 1111111 23799995
No 73
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=74.50 E-value=0.88 Score=38.70 Aligned_cols=33 Identities=21% Similarity=0.701 Sum_probs=23.9
Q ss_pred CCCceeeCc--cchhhccCC-CCCCC------CCCCCCceec
Q 004427 642 PDQEWVQCN--KCRKWRMLD-PGFDT------KSLPVEWFCY 674 (754)
Q Consensus 642 ~~~~WVQCd--~C~KWR~Lp-~~~~~------~~lp~~W~C~ 674 (754)
.+..||||| .|..|-++. .++.. ...|++|+|.
T Consensus 26 ~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~ 67 (78)
T 1wew_A 26 ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCE 67 (78)
T ss_dssp CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCH
T ss_pred CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECC
Confidence 356899999 999998765 12221 1578999995
No 74
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=74.37 E-value=0.54 Score=45.34 Aligned_cols=34 Identities=21% Similarity=0.546 Sum_probs=23.1
Q ss_pred CCCceeeCccchhhccCC-CCCC--CCCCCCCceecC
Q 004427 642 PDQEWVQCNKCRKWRMLD-PGFD--TKSLPVEWFCYM 675 (754)
Q Consensus 642 ~~~~WVQCd~C~KWR~Lp-~~~~--~~~lp~~W~C~m 675 (754)
....|||||.|..|=+.. .++. ....++.|+|..
T Consensus 19 ~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~ 55 (174)
T 2ri7_A 19 ESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQ 55 (174)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHH
T ss_pred CCCCEeECCCCCchhChhhcCCchhhccCccCeecCC
Confidence 356899999999996543 1221 124578999964
No 75
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=70.86 E-value=1.4 Score=36.46 Aligned_cols=19 Identities=32% Similarity=0.758 Sum_probs=15.7
Q ss_pred CCCCCceeeCc-cchhhccC
Q 004427 640 YKPDQEWVQCN-KCRKWRML 658 (754)
Q Consensus 640 ~~~~~~WVQCd-~C~KWR~L 658 (754)
+.++..||||| .|.+|=+.
T Consensus 18 ~~~~~~mI~CD~~C~~WfH~ 37 (65)
T 2vpb_A 18 VNDDQDAILCEASCQKWFHR 37 (65)
T ss_dssp CCTTSCEEEBTTTTCCEEEH
T ss_pred cCCCCCeEecccCccccCch
Confidence 55678999999 99999544
No 76
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=62.26 E-value=1.6 Score=39.25 Aligned_cols=35 Identities=26% Similarity=0.690 Sum_probs=22.5
Q ss_pred CCCCCceeeCc-cchhhccCC-CCCCCC-------CCCCCceec
Q 004427 640 YKPDQEWVQCN-KCRKWRMLD-PGFDTK-------SLPVEWFCY 674 (754)
Q Consensus 640 ~~~~~~WVQCd-~C~KWR~Lp-~~~~~~-------~lp~~W~C~ 674 (754)
|.++..||||| .|..|=+.. .++... +-.++|+|.
T Consensus 13 ~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp 56 (105)
T 2xb1_A 13 VNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACD 56 (105)
T ss_dssp CCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCH
T ss_pred cCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECc
Confidence 44567899998 999996654 122210 123789995
No 77
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.55 E-value=3.9 Score=36.11 Aligned_cols=30 Identities=27% Similarity=0.801 Sum_probs=20.6
Q ss_pred CceeeCcc--ch-hhccCCC-CCCCCCCCCCceec
Q 004427 644 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 674 (754)
Q Consensus 644 ~~WVQCd~--C~-KWR~Lp~-~~~~~~lp~~W~C~ 674 (754)
..+||||. |. .|=++.= ++. ...+++|||.
T Consensus 47 g~MI~CD~~dC~~~WfH~~CVgl~-~~p~g~W~Cp 80 (91)
T 1weu_A 47 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 80 (91)
T ss_dssp SCCCCCSCSSCSCCCCCSTTTTCS-SCCCSSCCCT
T ss_pred CCEeEecCCCCCCCCEecccCCcC-cCCCCCEECc
Confidence 47999999 77 8976652 232 2235799996
No 78
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=56.14 E-value=5.6 Score=33.34 Aligned_cols=30 Identities=27% Similarity=0.815 Sum_probs=20.8
Q ss_pred CceeeCcc--ch-hhccCC-CCCCCCCCCCCceec
Q 004427 644 QEWVQCNK--CR-KWRMLD-PGFDTKSLPVEWFCY 674 (754)
Q Consensus 644 ~~WVQCd~--C~-KWR~Lp-~~~~~~~lp~~W~C~ 674 (754)
..+||||. |. .|=++. .++. ....++|||.
T Consensus 27 g~MI~CD~~~C~~~wfH~~Cvgl~-~~p~g~w~Cp 60 (71)
T 1wen_A 27 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 60 (71)
T ss_dssp SSEECCSCSSCSCCCEETTTTTCS-SCCSSCCCCT
T ss_pred CCEeEeeCCCCCCccEecccCCcC-cCCCCCEECC
Confidence 57999999 87 797765 2332 2224899995
No 79
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.40 E-value=3.4 Score=34.64 Aligned_cols=32 Identities=19% Similarity=0.566 Sum_probs=21.2
Q ss_pred CCceeeCccchhhccCC-CCCCCCC------CCCCceec
Q 004427 643 DQEWVQCNKCRKWRMLD-PGFDTKS------LPVEWFCY 674 (754)
Q Consensus 643 ~~~WVQCd~C~KWR~Lp-~~~~~~~------lp~~W~C~ 674 (754)
...|||||.|..|-+.. .++.... .++.|+|.
T Consensus 27 ~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~ 65 (76)
T 1wem_A 27 NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICP 65 (76)
T ss_dssp SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCH
T ss_pred CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECc
Confidence 35899999999996654 1222111 36899995
No 80
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=49.88 E-value=5.6 Score=32.49 Aligned_cols=30 Identities=20% Similarity=0.706 Sum_probs=20.2
Q ss_pred CceeeCcc--ch-hhccCC-CCCCCCCCCCCceec
Q 004427 644 QEWVQCNK--CR-KWRMLD-PGFDTKSLPVEWFCY 674 (754)
Q Consensus 644 ~~WVQCd~--C~-KWR~Lp-~~~~~~~lp~~W~C~ 674 (754)
..+||||. |. .|=++. .++. ....++|||.
T Consensus 22 g~MI~CD~c~C~~~WfH~~Cvgl~-~~p~~~w~Cp 55 (62)
T 2g6q_A 22 GEMIGCDNEQCPIEWFHFSCVSLT-YKPKGKWYCP 55 (62)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCeeeeeCCCCCcccEecccCCcC-cCCCCCEECc
Confidence 47999999 55 997665 2232 2235799995
No 81
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=49.30 E-value=5.8 Score=32.03 Aligned_cols=30 Identities=23% Similarity=0.739 Sum_probs=20.1
Q ss_pred CceeeCcc--ch-hhccCC-CCCCCCCCCCCceec
Q 004427 644 QEWVQCNK--CR-KWRMLD-PGFDTKSLPVEWFCY 674 (754)
Q Consensus 644 ~~WVQCd~--C~-KWR~Lp-~~~~~~~lp~~W~C~ 674 (754)
..+||||. |. .|=++. .++. ....++|||.
T Consensus 20 g~mi~CD~~~C~~~wfH~~Cvgl~-~~p~~~w~Cp 53 (59)
T 3c6w_A 20 GEMIGCDNPDCPIEWFHFACVDLT-TKPKGKWFCP 53 (59)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCeeEeeCCCCCCCCEecccCCcc-cCCCCCEECc
Confidence 47999999 87 797665 2232 1223799995
No 82
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=47.17 E-value=6.9 Score=44.54 Aligned_cols=36 Identities=28% Similarity=0.757 Sum_probs=25.8
Q ss_pred CCCCCceeeCccchhhccCC-CCCCC--CCCCCCceecC
Q 004427 640 YKPDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 675 (754)
Q Consensus 640 ~~~~~~WVQCd~C~KWR~Lp-~~~~~--~~lp~~W~C~m 675 (754)
.-++..|||||.|..|=+.. -++.. ....++|+|-.
T Consensus 52 ~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~ 90 (528)
T 3pur_A 52 KKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPK 90 (528)
T ss_dssp TTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTT
T ss_pred CCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcC
Confidence 34678999999999998764 23332 34568999943
No 83
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=44.05 E-value=3.3 Score=46.79 Aligned_cols=35 Identities=14% Similarity=0.367 Sum_probs=24.1
Q ss_pred CCCCceeeCccchhhccCC-CCCCC--CCCCCCceecC
Q 004427 641 KPDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 675 (754)
Q Consensus 641 ~~~~~WVQCd~C~KWR~Lp-~~~~~--~~lp~~W~C~m 675 (754)
.+...|||||.|..|=+.. -++.. ...+++|+|..
T Consensus 47 d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 84 (488)
T 3kv5_D 47 DVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPN 84 (488)
T ss_dssp CTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHH
T ss_pred CCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCC
Confidence 3467899999999997654 12322 23468999964
No 84
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=43.70 E-value=8.1 Score=38.12 Aligned_cols=32 Identities=25% Similarity=0.690 Sum_probs=21.3
Q ss_pred CceeeCccchhhccCC-CCCCC------CCCCC--CceecC
Q 004427 644 QEWVQCNKCRKWRMLD-PGFDT------KSLPV--EWFCYM 675 (754)
Q Consensus 644 ~~WVQCd~C~KWR~Lp-~~~~~------~~lp~--~W~C~m 675 (754)
..|||||.|..|=+.. .++.. ..+|+ .|+|..
T Consensus 19 ~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~ 59 (183)
T 3lqh_A 19 SKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVN 59 (183)
T ss_dssp CCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTT
T ss_pred CCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcC
Confidence 3699999999998765 23321 12343 799964
No 85
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=43.00 E-value=11 Score=33.08 Aligned_cols=30 Identities=20% Similarity=0.626 Sum_probs=20.1
Q ss_pred CceeeCccch---hhccCC-CCCCCCCCCCCceec
Q 004427 644 QEWVQCNKCR---KWRMLD-PGFDTKSLPVEWFCY 674 (754)
Q Consensus 644 ~~WVQCd~C~---KWR~Lp-~~~~~~~lp~~W~C~ 674 (754)
..+|+||.|. .|=++. .++. ....++|||.
T Consensus 37 g~MI~CD~c~C~~eWfH~~CVgl~-~~p~~~W~Cp 70 (90)
T 2jmi_A 37 GPMVACDNPACPFEWFHYGCVGLK-QAPKGKWYCS 70 (90)
T ss_dssp SSEECCCSSSCSCSCEETTTSSCS-SCTTSCCCSS
T ss_pred CCEEEecCCCCccccCcCccCCCC-cCCCCCccCC
Confidence 3699999976 897765 2332 1223699995
No 86
>1ow1_A Smart/HDAC1 associated repressor protein; beta-alpha-barrel, SPOC domain,, transcription; 1.80A {Homo sapiens} SCOP: b.131.1.3
Probab=42.94 E-value=12 Score=37.28 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=26.6
Q ss_pred HHHHHHhhcCCeEEEEEec-------eeEEEEeCCC
Q 004427 88 RRFLIYLQGRDMVAIAKFK-------FWEFYILPPD 116 (754)
Q Consensus 88 ~~f~~~l~~~~~~~~~~~~-------~~~~~~~~~~ 116 (754)
..|.+||+.-.-+|||.+. .+-+|||||-
T Consensus 128 ~~fV~YL~qKqAAGIisl~~~~s~~~~~vlhiFPPC 163 (195)
T 1ow1_A 128 AAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPC 163 (195)
T ss_dssp HHTHHHHHHHTEEEEEEECCTTCCSCCEEEEEECSS
T ss_pred HHHHHHHHhCccceEEecCCCCCCCcceEEEEcCCc
Confidence 5599999999999999998 5999999997
No 87
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=40.50 E-value=9.5 Score=30.76 Aligned_cols=30 Identities=27% Similarity=0.815 Sum_probs=20.2
Q ss_pred CceeeCcc--ch-hhccCC-CCCCCCCCCCCceec
Q 004427 644 QEWVQCNK--CR-KWRMLD-PGFDTKSLPVEWFCY 674 (754)
Q Consensus 644 ~~WVQCd~--C~-KWR~Lp-~~~~~~~lp~~W~C~ 674 (754)
...||||. |. .|=++. .++. ..-.++|||.
T Consensus 21 g~mi~CD~cdC~~~wfH~~Cvgl~-~~p~g~w~C~ 54 (60)
T 2vnf_A 21 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 54 (60)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCEEEeCCCCCCCceEehhcCCCC-cCCCCCEECc
Confidence 57999999 66 897665 2232 1223899995
No 88
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=34.01 E-value=9.7 Score=35.24 Aligned_cols=16 Identities=25% Similarity=0.777 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHhhcCC
Q 004427 83 DHNEWRRFLIYLQGRD 98 (754)
Q Consensus 83 ~~~ew~~f~~~l~~~~ 98 (754)
...+|++||||+.+++
T Consensus 86 s~~~WdRFMRFMeRYA 101 (120)
T 2kvo_A 86 SQPEWDRFMRFMERYG 101 (120)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3469999999998775
No 89
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=31.21 E-value=11 Score=33.71 Aligned_cols=12 Identities=42% Similarity=1.198 Sum_probs=10.5
Q ss_pred eeeCccchhhcc
Q 004427 646 WVQCNKCRKWRM 657 (754)
Q Consensus 646 WVQCd~C~KWR~ 657 (754)
.||||.|..|=+
T Consensus 2 mi~c~~c~~w~H 13 (140)
T 2ku7_A 2 MMQCGKCDRWVH 13 (140)
T ss_dssp CCCCSCCSSCHH
T ss_pred ccccccCCCccC
Confidence 699999999954
No 90
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.48 E-value=14 Score=30.75 Aligned_cols=31 Identities=23% Similarity=0.587 Sum_probs=20.2
Q ss_pred CCceeeCccch---hhccCC-CCCCCCCCCCCceec
Q 004427 643 DQEWVQCNKCR---KWRMLD-PGFDTKSLPVEWFCY 674 (754)
Q Consensus 643 ~~~WVQCd~C~---KWR~Lp-~~~~~~~lp~~W~C~ 674 (754)
...+||||.|. .|=++. .++.. ...++|||.
T Consensus 16 ~g~MI~CD~cdC~~~WfH~~Cvgl~~-~p~~~w~Cp 50 (70)
T 1x4i_A 16 YGEMVGCDNQDCPIEWFHYGCVGLTE-APKGKWYCP 50 (70)
T ss_dssp CSSEECCSCTTCSCCCEEHHHHTCSS-CCSSCCCCH
T ss_pred CCCEeEeCCCCCCccCCcccccccCc-CCCCCEECC
Confidence 44899999974 786554 12222 236799995
Done!