BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004428
         (754 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3U9M|A Chain A, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
 pdb|3U9M|C Chain C, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
 pdb|3U9M|E Chain E, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
 pdb|3U9M|G Chain G, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
          Length = 160

 Score = 30.4 bits (67), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 570 EYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYF 629
           E   +  K L NV+  YE+ N    AK    RLE FT+   P +K+  +      L  YF
Sbjct: 87  EMLSLFEKGLKNVKNEYEQLN---YAKQLKERLEAFTRDFLPHMKEE-EEVFQPMLMEYF 142

Query: 630 EFVRLRNFLKSQNASFC 646
            +  L++  K   A  C
Sbjct: 143 TYEELKDIKKKVIAQHC 159


>pdb|3V5X|A Chain A, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell
 pdb|3V5X|B Chain B, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell
 pdb|3V5Y|A Chain A, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
 pdb|3V5Y|B Chain B, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
 pdb|3V5Y|C Chain C, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
 pdb|3V5Y|D Chain D, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
 pdb|3V5Z|A Chain A, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell, Grown
           Anaerobically
 pdb|3V5Z|B Chain B, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell, Grown
           Anaerobically
          Length = 161

 Score = 30.0 bits (66), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 570 EYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYF 629
           E   +  K L NV+  YE+ N    AK    RLE FT+   P +K+  +      L  YF
Sbjct: 87  EMLSLFEKGLKNVKNEYEQLN---YAKQLKERLEAFTRDFLPHMKEE-EEVFQPMLMEYF 142

Query: 630 EFVRLRNFLKSQNASFC 646
            +  L++  K   A  C
Sbjct: 143 TYEELKDIKKKVIAQHC 159


>pdb|1KO4|A Chain A, Crystal Structure Of Gluconate Kinase
 pdb|1KO4|B Chain B, Crystal Structure Of Gluconate Kinase
          Length = 175

 Score = 30.0 bits (66), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 6/55 (10%)

Query: 267 SLCNSYRDIL---HSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDT 318
           +L   YRD+L   + N    YLKG   D +++E+ L     H F+T+ LVT+ +T
Sbjct: 89  ALKKHYRDLLREGNPNLSFIYLKG---DFDVIESRLKARKGHFFKTQXLVTQFET 140


>pdb|1KNQ|A Chain A, Crystal Structure Of Gluconate Kinase
 pdb|1KNQ|B Chain B, Crystal Structure Of Gluconate Kinase
 pdb|1KO1|A Chain A, Crystal Structure Of Gluconate Kinase
 pdb|1KO1|B Chain B, Crystal Structure Of Gluconate Kinase
 pdb|1KO5|A Chain A, Crystal Structure Of Gluconate Kinase
 pdb|1KO5|B Chain B, Crystal Structure Of Gluconate Kinase
 pdb|1KO8|A Chain A, Crystal Structure Of Gluconate Kinase
 pdb|1KO8|B Chain B, Crystal Structure Of Gluconate Kinase
 pdb|1KOF|A Chain A, Crystal Structure Of Gluconate Kinase
 pdb|1KOF|B Chain B, Crystal Structure Of Gluconate Kinase
          Length = 175

 Score = 29.3 bits (64), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 6/55 (10%)

Query: 267 SLCNSYRDIL---HSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDT 318
           +L   YRD+L   + N    YLKG   D +++E+ L     H F+T+ LVT+ +T
Sbjct: 89  ALKKHYRDLLREGNPNLSFIYLKG---DFDVIESRLKARKGHFFKTQMLVTQFET 140


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,227,923
Number of Sequences: 62578
Number of extensions: 880132
Number of successful extensions: 1788
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1788
Number of HSP's gapped (non-prelim): 5
length of query: 754
length of database: 14,973,337
effective HSP length: 106
effective length of query: 648
effective length of database: 8,340,069
effective search space: 5404364712
effective search space used: 5404364712
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)