Query 004428
Match_columns 754
No_of_seqs 250 out of 1161
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 23:17:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2340 Uncharacterized conser 100.0 2E-148 4E-153 1210.0 28.9 547 177-754 130-696 (698)
2 PF06862 DUF1253: Protein of u 100.0 3E-133 6E-138 1104.4 31.9 432 308-753 1-442 (442)
3 KOG0338 ATP-dependent RNA heli 100.0 1.2E-66 2.5E-71 567.4 25.3 361 230-737 181-544 (691)
4 KOG0330 ATP-dependent RNA heli 100.0 5.1E-64 1.1E-68 534.5 27.6 359 229-739 60-423 (476)
5 COG0513 SrmB Superfamily II DN 100.0 7.8E-63 1.7E-67 559.9 37.1 361 230-738 29-396 (513)
6 KOG0331 ATP-dependent RNA heli 100.0 8.8E-63 1.9E-67 550.1 30.0 361 231-732 92-454 (519)
7 KOG0333 U5 snRNP-like RNA heli 100.0 6.5E-59 1.4E-63 508.6 31.5 383 220-727 235-625 (673)
8 KOG0335 ATP-dependent RNA heli 100.0 5.9E-58 1.3E-62 504.9 28.3 389 222-753 66-466 (482)
9 KOG0340 ATP-dependent RNA heli 100.0 1.6E-57 3.5E-62 480.5 25.2 367 229-739 6-377 (442)
10 KOG0336 ATP-dependent RNA heli 100.0 7.5E-56 1.6E-60 473.1 25.1 387 188-731 185-577 (629)
11 KOG0339 ATP-dependent RNA heli 100.0 1.6E-53 3.4E-58 464.2 28.1 362 222-729 215-578 (731)
12 KOG0347 RNA helicase [RNA proc 100.0 2.6E-54 5.6E-59 474.2 18.8 376 230-734 181-578 (731)
13 PTZ00110 helicase; Provisional 100.0 5.4E-52 1.2E-56 474.4 38.3 370 222-735 122-493 (545)
14 PRK04837 ATP-dependent RNA hel 100.0 1.8E-51 3.9E-56 455.1 38.9 366 229-738 7-377 (423)
15 PRK10590 ATP-dependent RNA hel 100.0 1.3E-51 2.9E-56 461.3 36.6 362 230-739 1-368 (456)
16 PRK11776 ATP-dependent RNA hel 100.0 3.4E-51 7.5E-56 457.3 37.2 356 229-737 3-363 (460)
17 KOG0342 ATP-dependent RNA heli 100.0 1.2E-51 2.7E-56 450.0 28.1 357 230-731 82-442 (543)
18 PRK11634 ATP-dependent RNA hel 100.0 1.2E-50 2.5E-55 469.8 35.7 354 229-734 5-360 (629)
19 KOG0341 DEAD-box protein abstr 100.0 4.3E-53 9.2E-58 449.6 14.0 366 221-726 161-528 (610)
20 PLN00206 DEAD-box ATP-dependen 100.0 4E-50 8.6E-55 456.4 36.1 369 222-735 113-484 (518)
21 PRK04537 ATP-dependent RNA hel 100.0 9.7E-50 2.1E-54 458.1 37.9 362 230-734 9-372 (572)
22 KOG0328 Predicted ATP-dependen 100.0 2.2E-50 4.8E-55 416.2 25.8 358 227-737 24-387 (400)
23 KOG0345 ATP-dependent RNA heli 100.0 5.9E-50 1.3E-54 434.6 30.4 368 232-743 6-386 (567)
24 KOG0326 ATP-dependent RNA heli 100.0 4.6E-51 9.9E-56 426.6 17.9 360 229-741 84-447 (459)
25 PRK11192 ATP-dependent RNA hel 100.0 3.6E-48 7.9E-53 429.4 39.1 356 230-734 1-360 (434)
26 KOG0343 RNA Helicase [RNA proc 100.0 3.7E-49 8.1E-54 433.5 27.6 360 229-735 68-432 (758)
27 KOG0348 ATP-dependent RNA heli 100.0 3.4E-48 7.4E-53 425.0 27.9 380 228-729 134-557 (708)
28 PRK01297 ATP-dependent RNA hel 100.0 6.1E-46 1.3E-50 417.2 36.9 371 228-742 85-461 (475)
29 KOG0334 RNA helicase [RNA proc 100.0 7.3E-47 1.6E-51 440.6 27.4 399 177-727 320-721 (997)
30 KOG0346 RNA helicase [RNA proc 100.0 3.2E-46 7E-51 402.7 26.7 370 230-739 19-426 (569)
31 KOG0337 ATP-dependent RNA heli 100.0 4.6E-45 1E-49 392.4 23.6 350 229-729 20-371 (529)
32 PTZ00424 helicase 45; Provisio 100.0 1.8E-42 3.9E-47 378.1 37.4 354 229-734 27-382 (401)
33 KOG0327 Translation initiation 100.0 8.2E-43 1.8E-47 372.9 24.5 353 227-733 23-377 (397)
34 KOG0350 DEAD-box ATP-dependent 100.0 8.5E-42 1.9E-46 372.9 25.3 386 232-735 129-549 (620)
35 KOG0344 ATP-dependent RNA heli 100.0 1.7E-41 3.7E-46 377.4 25.2 372 220-735 122-504 (593)
36 KOG4284 DEAD box protein [Tran 100.0 1.7E-41 3.8E-46 377.4 21.4 356 226-726 21-379 (980)
37 KOG0332 ATP-dependent RNA heli 100.0 1.1E-40 2.3E-45 354.7 26.2 351 229-733 89-451 (477)
38 TIGR03817 DECH_helic helicase/ 100.0 9.8E-39 2.1E-43 376.6 32.6 354 236-731 20-393 (742)
39 TIGR00614 recQ_fam ATP-depende 100.0 3.4E-34 7.4E-39 322.3 31.6 330 252-736 7-343 (470)
40 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.5E-34 7.6E-39 336.7 31.5 339 252-723 12-388 (844)
41 PRK09401 reverse gyrase; Revie 100.0 2.5E-34 5.4E-39 351.2 31.2 329 243-712 67-429 (1176)
42 KOG0329 ATP-dependent RNA heli 100.0 3.8E-35 8.3E-40 300.2 13.2 319 230-734 42-364 (387)
43 PLN03137 ATP-dependent DNA hel 100.0 1E-32 2.2E-37 329.0 34.9 347 235-736 442-797 (1195)
44 PHA02653 RNA helicase NPH-II; 100.0 2.3E-32 5.1E-37 318.2 30.7 327 259-734 166-522 (675)
45 PRK13767 ATP-dependent helicas 100.0 3.6E-32 7.8E-37 326.2 32.6 355 253-728 29-401 (876)
46 KOG0349 Putative DEAD-box RNA 100.0 5.7E-33 1.2E-37 299.2 19.8 298 344-724 286-613 (725)
47 PRK11057 ATP-dependent DNA hel 100.0 2.4E-31 5.1E-36 308.2 34.3 334 240-736 12-353 (607)
48 TIGR01054 rgy reverse gyrase. 100.0 9.8E-32 2.1E-36 328.7 30.3 317 243-700 65-410 (1171)
49 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.7E-31 1E-35 313.2 32.4 313 261-732 6-342 (819)
50 PRK10689 transcription-repair 100.0 3.1E-31 6.6E-36 323.6 31.1 314 258-735 601-934 (1147)
51 PRK14701 reverse gyrase; Provi 100.0 2.2E-31 4.7E-36 332.0 29.5 363 244-746 67-476 (1638)
52 TIGR00580 mfd transcription-re 100.0 7.3E-31 1.6E-35 314.6 30.8 331 239-734 438-784 (926)
53 PRK02362 ski2-like helicase; P 100.0 6.2E-31 1.3E-35 310.7 29.0 341 230-727 1-398 (737)
54 PRK11664 ATP-dependent RNA hel 100.0 1.2E-30 2.7E-35 309.8 29.9 312 261-731 9-344 (812)
55 TIGR01389 recQ ATP-dependent D 100.0 2.4E-30 5.3E-35 298.6 31.2 326 253-737 10-342 (591)
56 PRK00254 ski2-like helicase; P 100.0 2.3E-29 5E-34 296.7 31.1 338 231-727 2-389 (720)
57 PRK10917 ATP-dependent DNA hel 100.0 6.9E-29 1.5E-33 291.1 30.4 331 239-736 248-603 (681)
58 PRK01172 ski2-like helicase; P 100.0 8.1E-28 1.8E-32 281.5 32.8 344 230-735 1-388 (674)
59 TIGR00643 recG ATP-dependent D 100.0 8.1E-28 1.7E-32 279.9 29.7 319 252-735 232-579 (630)
60 PRK12898 secA preprotein trans 100.0 5.3E-28 1.2E-32 279.3 27.8 121 618-744 473-602 (656)
61 PRK09751 putative ATP-dependen 100.0 8.4E-28 1.8E-32 296.3 28.2 331 278-724 2-381 (1490)
62 TIGR01587 cas3_core CRISPR-ass 100.0 2.8E-27 6E-32 255.6 24.2 323 274-725 1-335 (358)
63 PRK09200 preprotein translocas 100.0 1.1E-26 2.4E-31 273.2 25.9 123 617-745 427-558 (790)
64 PHA02558 uvsW UvsW helicase; P 99.9 9.6E-26 2.1E-30 256.2 27.6 306 258-717 115-442 (501)
65 PRK11131 ATP-dependent RNA hel 99.9 2E-25 4.3E-30 271.7 28.2 231 451-731 163-416 (1294)
66 TIGR00963 secA preprotein tran 99.9 2.4E-25 5.3E-30 259.0 27.6 124 616-745 403-534 (745)
67 TIGR03714 secA2 accessory Sec 99.9 1.5E-24 3.1E-29 253.7 27.2 122 617-745 423-554 (762)
68 PRK13766 Hef nuclease; Provisi 99.9 1.4E-22 3E-27 240.6 34.0 109 616-726 363-479 (773)
69 TIGR03158 cas3_cyano CRISPR-as 99.9 6.5E-23 1.4E-27 224.0 26.5 333 262-712 2-357 (357)
70 TIGR01967 DEAH_box_HrpA ATP-de 99.9 2.3E-20 4.9E-25 228.4 29.0 231 451-731 156-409 (1283)
71 cd00268 DEADc DEAD-box helicas 99.9 1.5E-20 3.3E-25 186.8 22.2 198 232-561 1-199 (203)
72 PRK05580 primosome assembly pr 99.8 3.2E-19 6.9E-24 209.8 29.0 310 258-721 145-544 (679)
73 COG1201 Lhr Lhr-like helicases 99.8 8.4E-19 1.8E-23 206.6 31.2 338 237-713 8-347 (814)
74 PRK13104 secA preprotein trans 99.8 9.3E-18 2E-22 198.6 28.3 125 616-746 442-605 (896)
75 PRK12899 secA preprotein trans 99.8 8.1E-17 1.8E-21 190.7 31.2 122 617-745 567-698 (970)
76 PRK04914 ATP-dependent helicas 99.8 3.6E-17 7.9E-22 197.0 27.5 101 617-719 492-596 (956)
77 PF00270 DEAD: DEAD/DEAH box h 99.8 3.4E-17 7.3E-22 157.0 18.7 167 259-553 1-169 (169)
78 COG0514 RecQ Superfamily II DN 99.8 3E-16 6.4E-21 179.8 28.3 335 243-737 7-348 (590)
79 TIGR00595 priA primosomal prot 99.7 4.9E-16 1.1E-20 177.4 26.1 89 631-721 271-376 (505)
80 PRK12904 preprotein translocas 99.7 2.3E-15 5E-20 178.1 28.3 138 598-745 412-590 (830)
81 COG1204 Superfamily II helicas 99.7 4.2E-15 9.1E-20 176.5 26.6 331 252-728 27-411 (766)
82 COG1111 MPH1 ERCC4-like helica 99.7 4.5E-14 9.7E-19 157.3 32.1 108 617-726 365-481 (542)
83 PRK13107 preprotein translocas 99.7 9.6E-15 2.1E-19 173.0 25.2 124 617-746 448-609 (908)
84 TIGR00603 rad25 DNA repair hel 99.7 9.7E-15 2.1E-19 171.6 24.8 104 617-727 495-608 (732)
85 PRK09694 helicase Cas3; Provis 99.6 2.5E-14 5.5E-19 171.7 25.1 333 258-715 287-663 (878)
86 COG1205 Distinct helicase fami 99.6 5.3E-14 1.1E-18 169.0 23.5 329 252-715 66-410 (851)
87 KOG0354 DEAD-box like helicase 99.6 1.3E-13 2.7E-18 160.6 24.7 116 617-735 412-538 (746)
88 PRK05298 excinuclease ABC subu 99.6 1.5E-14 3.3E-19 169.8 17.2 121 617-739 445-570 (652)
89 PRK11448 hsdR type I restricti 99.6 1.2E-13 2.5E-18 169.9 23.4 94 617-714 697-800 (1123)
90 TIGR00631 uvrb excinuclease AB 99.6 5.7E-14 1.2E-18 164.8 19.0 122 617-740 441-567 (655)
91 TIGR01407 dinG_rel DnaQ family 99.5 4.5E-12 9.9E-17 153.1 27.5 83 612-699 668-756 (850)
92 KOG0351 ATP-dependent DNA heli 99.5 2.9E-12 6.2E-17 154.3 22.4 346 240-738 251-604 (941)
93 COG1061 SSL2 DNA or RNA helica 99.5 1.2E-11 2.6E-16 139.5 24.8 94 618-714 283-376 (442)
94 PRK12906 secA preprotein trans 99.5 1E-12 2.2E-17 155.4 16.8 138 598-745 422-570 (796)
95 KOG0952 DNA/RNA helicase MER3/ 99.4 2.4E-11 5.3E-16 143.8 27.5 343 259-730 112-494 (1230)
96 PRK12900 secA preprotein trans 99.4 7.1E-12 1.5E-16 149.7 17.5 123 617-745 597-728 (1025)
97 KOG0352 ATP-dependent DNA heli 99.4 1.5E-11 3.2E-16 134.7 18.4 351 240-741 6-377 (641)
98 COG1202 Superfamily II helicas 99.4 3.2E-11 6.9E-16 135.9 19.8 336 231-724 195-551 (830)
99 cd00079 HELICc Helicase superf 99.3 4.5E-11 9.7E-16 109.3 13.6 118 600-721 12-130 (131)
100 PF00271 Helicase_C: Helicase 99.3 6.9E-12 1.5E-16 107.1 6.5 78 636-715 1-78 (78)
101 smart00487 DEXDc DEAD-like hel 99.2 7.7E-10 1.7E-14 106.0 17.6 174 258-560 9-184 (201)
102 PLN03142 Probable chromatin-re 99.1 2.9E-08 6.2E-13 121.5 29.7 131 607-740 477-615 (1033)
103 COG1110 Reverse gyrase [DNA re 99.1 8.5E-09 1.8E-13 122.8 24.1 314 243-699 69-417 (1187)
104 PRK07246 bifunctional ATP-depe 99.1 1.4E-08 3E-13 122.7 25.9 94 601-701 632-728 (820)
105 KOG0353 ATP-dependent DNA heli 99.1 7.9E-09 1.7E-13 112.1 20.5 132 605-738 303-479 (695)
106 KOG0951 RNA helicase BRR2, DEA 99.0 1.6E-08 3.4E-13 121.9 21.1 364 258-753 310-753 (1674)
107 smart00490 HELICc helicase sup 99.0 9E-10 1.9E-14 92.6 7.8 81 633-715 2-82 (82)
108 COG1643 HrpA HrpA-like helicas 99.0 1.2E-07 2.6E-12 113.8 28.2 229 452-731 140-392 (845)
109 TIGR03117 cas_csf4 CRISPR-asso 98.9 4.2E-07 9.1E-12 106.8 25.7 86 611-701 463-563 (636)
110 COG1197 Mfd Transcription-repa 98.9 8.3E-07 1.8E-11 108.2 28.7 275 345-736 644-929 (1139)
111 COG4098 comFA Superfamily II D 98.8 7.3E-07 1.6E-11 96.6 23.5 292 258-715 98-402 (441)
112 COG1200 RecG RecG-like helicas 98.8 6.8E-06 1.5E-10 96.0 30.3 328 236-726 246-591 (677)
113 PRK08074 bifunctional ATP-depe 98.7 4.7E-06 1E-10 102.4 26.5 89 612-702 746-839 (928)
114 COG1203 CRISPR-associated heli 98.7 1.9E-06 4.1E-11 103.4 22.3 335 259-721 197-545 (733)
115 TIGR00348 hsdR type I site-spe 98.7 2.7E-06 5.9E-11 101.0 23.4 93 618-713 514-633 (667)
116 cd00046 DEXDc DEAD-like helica 98.4 5.6E-06 1.2E-10 74.6 14.4 121 274-501 2-122 (144)
117 KOG0950 DNA polymerase theta/e 98.4 1.6E-05 3.5E-10 95.1 21.5 333 260-731 226-616 (1008)
118 KOG0922 DEAH-box RNA helicase 98.2 0.00018 3.9E-09 83.9 23.9 229 452-731 141-395 (674)
119 PF04851 ResIII: Type III rest 98.2 2.1E-05 4.4E-10 75.9 12.9 154 258-504 4-169 (184)
120 KOG0947 Cytoplasmic exosomal R 98.1 0.00052 1.1E-08 82.5 24.7 230 451-726 379-723 (1248)
121 KOG0920 ATP-dependent RNA heli 98.1 0.00024 5.3E-09 86.2 20.6 330 259-731 175-549 (924)
122 COG4581 Superfamily II RNA hel 98.0 0.00098 2.1E-08 82.0 24.9 316 253-724 117-535 (1041)
123 KOG0923 mRNA splicing factor A 97.8 0.00026 5.7E-09 82.3 14.2 203 480-727 376-607 (902)
124 KOG0953 Mitochondrial RNA heli 97.8 0.0049 1.1E-07 71.1 23.4 195 481-736 274-486 (700)
125 PRK13103 secA preprotein trans 97.8 0.0053 1.1E-07 74.9 24.8 131 608-745 437-608 (913)
126 PRK12326 preprotein translocas 97.7 0.0034 7.3E-08 75.0 22.5 124 608-738 415-557 (764)
127 COG4096 HsdR Type I site-speci 97.6 0.0024 5.2E-08 76.4 19.0 93 618-714 426-525 (875)
128 KOG0924 mRNA splicing factor A 97.6 0.0078 1.7E-07 70.7 22.1 199 479-725 465-696 (1042)
129 COG0556 UvrB Helicase subunit 97.6 0.0018 3.9E-08 74.3 16.4 213 477-724 326-554 (663)
130 CHL00122 secA preprotein trans 97.6 0.0094 2E-07 72.4 23.2 68 617-687 423-491 (870)
131 PRK12903 secA preprotein trans 97.2 0.017 3.7E-07 70.2 18.6 138 598-746 408-558 (925)
132 PF13307 Helicase_C_2: Helicas 97.0 0.0011 2.4E-08 65.6 5.5 84 614-699 5-92 (167)
133 COG1198 PriA Primosomal protei 97.0 0.096 2.1E-06 63.3 22.5 88 631-720 493-597 (730)
134 KOG0926 DEAH-box RNA helicase 96.9 0.25 5.4E-06 59.7 24.7 153 451-641 349-504 (1172)
135 TIGR00604 rad3 DNA repair heli 96.5 0.028 6E-07 67.8 13.9 90 612-701 516-618 (705)
136 PRK11747 dinG ATP-dependent DN 96.5 0.032 7E-07 67.2 13.8 80 617-702 533-620 (697)
137 KOG0925 mRNA splicing factor A 96.4 0.89 1.9E-05 52.6 23.8 195 479-726 156-387 (699)
138 KOG0948 Nuclear exosomal RNA h 96.4 0.64 1.4E-05 56.0 23.4 125 613-748 378-553 (1041)
139 COG1199 DinG Rad3-related DNA 96.0 0.036 7.7E-07 65.9 10.9 85 615-704 476-565 (654)
140 smart00489 DEXDc3 DEAD-like he 95.9 0.028 6.1E-07 60.7 8.6 72 258-367 9-84 (289)
141 smart00488 DEXDc2 DEAD-like he 95.9 0.028 6.1E-07 60.7 8.6 72 258-367 9-84 (289)
142 PF14617 CMS1: U3-containing 9 95.7 0.029 6.3E-07 59.8 7.7 41 442-490 169-209 (252)
143 PRK12901 secA preprotein trans 94.9 0.7 1.5E-05 57.7 16.7 136 599-745 611-758 (1112)
144 KOG0951 RNA helicase BRR2, DEA 94.8 1.1 2.4E-05 56.6 18.0 313 259-727 1145-1495(1674)
145 PF00176 SNF2_N: SNF2 family N 94.8 0.54 1.2E-05 49.2 13.7 23 346-369 60-82 (299)
146 KOG1000 Chromatin remodeling p 94.7 0.5 1.1E-05 54.6 13.7 213 483-711 309-591 (689)
147 KOG0385 Chromatin remodeling c 93.6 0.67 1.4E-05 55.9 12.2 119 606-726 476-599 (971)
148 KOG0391 SNF2 family DNA-depend 93.5 0.6 1.3E-05 58.4 12.0 123 615-744 1273-1403(1958)
149 COG0553 HepA Superfamily II DN 93.5 0.34 7.5E-06 58.5 10.2 117 609-727 700-823 (866)
150 PF02399 Herpes_ori_bp: Origin 93.3 4.2 9.1E-05 49.9 18.5 200 479-711 139-373 (824)
151 PRK12902 secA preprotein trans 93.0 0.3 6.4E-06 60.1 8.6 68 617-687 438-506 (939)
152 KOG0389 SNF2 family DNA-depend 92.5 0.88 1.9E-05 55.1 11.2 122 600-727 761-889 (941)
153 PF07517 SecA_DEAD: SecA DEAD- 91.0 1.7 3.6E-05 47.0 10.6 69 252-368 74-142 (266)
154 KOG0388 SNF2 family DNA-depend 89.4 2.6 5.7E-05 50.7 11.1 137 607-745 1034-1175(1185)
155 PRK12906 secA preprotein trans 89.4 1.1 2.3E-05 55.1 8.3 71 252-370 77-147 (796)
156 KOG4150 Predicted ATP-dependen 88.5 35 0.00077 40.7 18.9 236 479-741 409-660 (1034)
157 PRK14873 primosome assembly pr 87.5 24 0.00052 42.9 17.9 24 346-369 190-213 (665)
158 TIGR02562 cas3_yersinia CRISPR 86.3 30 0.00066 44.1 18.1 233 451-715 562-880 (1110)
159 PRK10917 ATP-dependent DNA hel 85.3 3.2 6.9E-05 50.3 9.1 76 618-694 310-389 (681)
160 KOG0390 DNA repair protein, SN 85.0 4.2 9.1E-05 49.8 9.8 124 620-744 596-727 (776)
161 smart00492 HELICc3 helicase su 83.8 3.4 7.4E-05 40.3 6.9 53 645-699 24-79 (141)
162 PF00580 UvrD-helicase: UvrD/R 83.7 3.9 8.4E-05 43.0 8.0 69 259-369 2-70 (315)
163 KOG0384 Chromodomain-helicase 83.7 6.9 0.00015 49.8 10.9 114 606-725 688-810 (1373)
164 COG1199 DinG Rad3-related DNA 83.3 3.1 6.7E-05 49.7 7.8 67 258-367 16-86 (654)
165 KOG0387 Transcription-coupled 82.4 12 0.00027 45.8 12.0 108 617-726 545-658 (923)
166 TIGR00643 recG ATP-dependent D 81.8 4.4 9.5E-05 48.6 8.3 75 618-693 284-362 (630)
167 PRK05580 primosome assembly pr 81.3 9.4 0.0002 46.4 10.9 76 618-696 190-266 (679)
168 PF13086 AAA_11: AAA domain; P 81.0 5.4 0.00012 39.7 7.5 72 259-366 3-75 (236)
169 KOG0386 Chromatin remodeling c 81.0 4.2 9.1E-05 50.7 7.7 102 601-706 711-815 (1157)
170 PRK10329 glutaredoxin-like pro 80.8 2.2 4.8E-05 37.6 4.1 71 620-693 2-73 (81)
171 TIGR00580 mfd transcription-re 79.0 8.3 0.00018 48.5 9.6 76 618-694 500-579 (926)
172 smart00491 HELICc2 helicase su 78.9 4.6 0.0001 39.4 6.0 67 633-699 6-80 (142)
173 PF05970 PIF1: PIF1-like helic 76.6 9.5 0.0002 42.6 8.4 34 478-511 98-131 (364)
174 KOG0392 SNF2 family DNA-depend 76.6 12 0.00026 47.8 9.8 83 618-702 1340-1427(1549)
175 TIGR00595 priA primosomal prot 75.5 9 0.00019 44.9 8.2 76 618-696 25-101 (505)
176 PRK15483 type III restriction- 75.3 6.8 0.00015 49.3 7.3 58 653-712 471-543 (986)
177 PF10446 DUF2457: Protein of u 75.0 2.2 4.8E-05 48.7 2.8 42 49-95 4-46 (458)
178 PRK11747 dinG ATP-dependent DN 73.8 7.9 0.00017 47.1 7.4 63 258-363 26-97 (697)
179 KOG0949 Predicted helicase, DE 73.8 34 0.00074 43.2 12.4 65 648-715 968-1034(1330)
180 TIGR00596 rad1 DNA repair prot 72.3 9.5 0.00021 47.3 7.6 24 617-640 294-317 (814)
181 KOG1002 Nucleotide excision re 69.5 13 0.00028 43.5 7.3 84 618-702 638-722 (791)
182 COG0513 SrmB Superfamily II DN 67.7 26 0.00056 41.2 9.6 68 621-694 102-180 (513)
183 TIGR00376 DNA helicase, putati 67.6 18 0.00038 43.8 8.4 65 258-366 158-223 (637)
184 TIGR00614 recQ_fam ATP-depende 65.6 23 0.00049 40.9 8.5 84 609-694 44-133 (470)
185 PRK10689 transcription-repair 65.4 17 0.00038 46.8 8.1 75 618-693 649-727 (1147)
186 cd00268 DEADc DEAD-box helicas 63.9 35 0.00076 33.9 8.5 74 617-694 68-149 (203)
187 PF07652 Flavi_DEAD: Flaviviru 62.8 7.1 0.00015 38.8 3.2 24 344-367 33-56 (148)
188 TIGR03817 DECH_helic helicase/ 62.7 22 0.00047 43.7 8.0 81 609-694 72-163 (742)
189 PF13245 AAA_19: Part of AAA d 62.2 33 0.00072 29.9 7.0 21 344-364 42-62 (76)
190 KOG0392 SNF2 family DNA-depend 61.9 8.9 0.00019 48.9 4.5 83 342-495 1029-1113(1549)
191 TIGR01389 recQ ATP-dependent D 60.4 34 0.00075 40.6 8.9 84 609-694 46-133 (591)
192 PRK11057 ATP-dependent DNA hel 60.4 32 0.0007 41.1 8.8 65 609-675 58-122 (607)
193 PRK12902 secA preprotein trans 60.2 1.5E+02 0.0032 37.6 14.2 40 258-308 86-125 (939)
194 PRK14873 primosome assembly pr 59.5 52 0.0011 40.2 10.3 76 618-696 188-265 (665)
195 PRK10919 ATP-dependent DNA hel 59.1 25 0.00053 42.7 7.5 47 618-664 342-390 (672)
196 TIGR02196 GlrX_YruB Glutaredox 59.0 17 0.00037 29.3 4.5 54 624-677 6-59 (74)
197 PRK12723 flagellar biosynthesi 58.6 31 0.00067 39.3 7.8 102 430-566 215-319 (388)
198 TIGR01075 uvrD DNA helicase II 57.7 24 0.00053 43.0 7.2 71 258-370 5-75 (715)
199 PF13604 AAA_30: AAA domain; P 57.0 35 0.00076 34.7 7.2 61 259-363 3-65 (196)
200 TIGR00604 rad3 DNA repair heli 53.9 33 0.00072 41.8 7.5 68 259-367 12-83 (705)
201 PRK14701 reverse gyrase; Provi 53.6 37 0.0008 45.5 8.3 60 618-677 122-187 (1638)
202 PRK11776 ATP-dependent RNA hel 52.9 42 0.00092 38.3 7.8 75 618-696 72-155 (460)
203 PRK11192 ATP-dependent RNA hel 52.9 52 0.0011 37.2 8.4 73 618-694 73-153 (434)
204 PRK11054 helD DNA helicase IV; 52.8 73 0.0016 39.0 10.1 85 242-369 182-266 (684)
205 TIGR01074 rep ATP-dependent DN 52.6 41 0.00088 40.5 7.9 70 258-369 2-71 (664)
206 PRK07940 DNA polymerase III su 50.1 55 0.0012 37.3 8.0 80 450-559 83-169 (394)
207 PRK11634 ATP-dependent RNA hel 49.4 64 0.0014 39.1 8.8 73 618-694 74-155 (629)
208 cd03418 GRX_GRXb_1_3_like Glut 48.4 93 0.002 25.8 7.4 57 621-677 2-60 (75)
209 KOG1803 DNA helicase [Replicat 47.4 47 0.001 39.9 7.0 64 259-365 187-250 (649)
210 PF10740 DUF2529: Protein of u 46.9 18 0.0004 36.8 3.2 33 617-649 81-115 (172)
211 PF00270 DEAD: DEAD/DEAH box h 46.5 1.3E+02 0.0028 28.5 9.0 83 609-694 35-125 (169)
212 PF04931 DNA_pol_phi: DNA poly 45.6 15 0.00033 45.3 2.9 10 69-78 593-602 (784)
213 TIGR02785 addA_Gpos recombinat 45.5 53 0.0012 42.8 7.8 66 258-366 2-67 (1232)
214 PRK05298 excinuclease ABC subu 45.2 56 0.0012 39.6 7.5 25 346-370 59-83 (652)
215 PF03354 Terminase_1: Phage Te 44.1 98 0.0021 35.9 9.0 28 343-370 53-80 (477)
216 cd03027 GRX_DEP Glutaredoxin ( 43.9 1E+02 0.0023 25.8 7.0 58 620-677 2-60 (73)
217 PRK12903 secA preprotein trans 43.4 77 0.0017 39.9 8.2 69 252-368 75-143 (925)
218 TIGR01054 rgy reverse gyrase. 42.3 93 0.002 40.5 9.2 60 618-677 121-187 (1171)
219 KOG0387 Transcription-coupled 42.0 80 0.0017 39.2 7.9 80 451-567 315-397 (923)
220 PRK11773 uvrD DNA-dependent he 41.5 67 0.0015 39.3 7.5 49 617-665 346-396 (721)
221 COG1110 Reverse gyrase [DNA re 41.2 75 0.0016 40.5 7.6 65 614-679 121-192 (1187)
222 PRK12323 DNA polymerase III su 41.1 79 0.0017 38.8 7.7 55 481-560 123-177 (700)
223 KOG0949 Predicted helicase, DE 40.9 64 0.0014 41.0 7.0 133 258-495 512-645 (1330)
224 COG1419 FlhF Flagellar GTP-bin 40.6 81 0.0018 36.3 7.4 104 428-569 240-348 (407)
225 TIGR00631 uvrb excinuclease AB 40.1 76 0.0017 38.7 7.6 25 347-371 57-81 (655)
226 PRK10638 glutaredoxin 3; Provi 39.4 1.4E+02 0.0031 25.8 7.3 59 619-677 2-61 (83)
227 COG2109 BtuR ATP:corrinoid ade 39.2 59 0.0013 33.9 5.5 53 482-556 122-175 (198)
228 PRK04537 ATP-dependent RNA hel 39.1 1.2E+02 0.0027 36.1 9.0 72 619-694 85-165 (572)
229 PF13871 Helicase_C_4: Helicas 39.0 42 0.00092 36.7 4.7 55 659-715 52-114 (278)
230 KOG0347 RNA helicase [RNA proc 38.1 50 0.0011 39.5 5.3 52 620-675 265-320 (731)
231 COG1197 Mfd Transcription-repa 37.6 85 0.0019 40.5 7.6 77 617-694 642-722 (1139)
232 KOG0390 DNA repair protein, SN 37.5 3.8E+02 0.0082 33.6 12.8 79 452-565 355-434 (776)
233 PRK10590 ATP-dependent RNA hel 35.8 1.6E+02 0.0035 33.8 9.0 71 619-694 76-155 (456)
234 KOG4439 RNA polymerase II tran 35.4 1.3E+02 0.0027 37.2 8.1 96 619-715 746-844 (901)
235 PF02698 DUF218: DUF218 domain 35.2 49 0.0011 31.8 4.1 66 617-682 36-112 (155)
236 PRK06893 DNA replication initi 34.9 28 0.00062 36.2 2.6 21 480-500 89-110 (229)
237 cd00561 CobA_CobO_BtuR ATP:cor 34.3 68 0.0015 32.2 5.0 53 481-555 94-147 (159)
238 PRK08699 DNA polymerase III su 34.0 1.5E+02 0.0032 33.0 8.1 90 442-561 62-167 (325)
239 PF10446 DUF2457: Protein of u 33.6 28 0.00061 40.2 2.4 11 292-302 204-214 (458)
240 TIGR02194 GlrX_NrdH Glutaredox 33.3 1.8E+02 0.0039 24.4 6.8 63 622-686 3-65 (72)
241 PRK13766 Hef nuclease; Provisi 33.3 1.3E+02 0.0028 36.9 8.2 75 617-696 57-139 (773)
242 KOG0943 Predicted ubiquitin-pr 32.8 42 0.00092 43.1 3.8 32 56-87 1692-1723(3015)
243 PF04931 DNA_pol_phi: DNA poly 32.3 35 0.00077 42.2 3.2 6 69-74 627-632 (784)
244 PF05876 Terminase_GpA: Phage 32.3 53 0.0011 39.2 4.5 68 641-708 306-387 (557)
245 TIGR03190 benz_CoA_bzdN benzoy 32.0 2.8E+02 0.006 31.4 9.9 69 588-661 288-361 (377)
246 COG1198 PriA Primosomal protei 31.5 1.9E+02 0.0041 35.9 9.0 74 618-694 245-319 (730)
247 PLN03137 ATP-dependent DNA hel 31.4 1.5E+02 0.0033 38.5 8.3 68 609-678 493-563 (1195)
248 KOG0127 Nucleolar protein fibr 30.8 68 0.0015 38.1 4.8 22 178-199 293-314 (678)
249 KOG2141 Protein involved in hi 30.6 49 0.0011 40.4 3.8 8 459-466 480-487 (822)
250 PLN00206 DEAD-box ATP-dependen 29.4 1.2E+02 0.0026 35.6 6.7 24 344-367 367-390 (518)
251 PRK06964 DNA polymerase III su 28.7 1.9E+02 0.0041 32.5 7.8 32 480-514 130-161 (342)
252 COG0653 SecA Preprotein transl 28.3 2.5E+02 0.0054 35.3 9.2 129 598-746 411-563 (822)
253 cd02066 GRX_family Glutaredoxi 28.3 3E+02 0.0064 21.7 7.2 56 621-676 2-58 (72)
254 TIGR00596 rad1 DNA repair prot 28.2 4.9E+02 0.011 32.9 11.8 55 444-510 3-60 (814)
255 KOG3089 Predicted DEAD-box-con 28.2 71 0.0015 34.1 4.0 41 441-489 187-227 (271)
256 KOG0991 Replication factor C, 27.6 56 0.0012 35.4 3.2 49 435-508 91-139 (333)
257 cd03031 GRX_GRX_like Glutaredo 27.6 2.4E+02 0.0051 28.0 7.4 45 620-664 1-52 (147)
258 PRK05707 DNA polymerase III su 27.3 2.1E+02 0.0046 31.8 7.9 33 479-514 103-135 (328)
259 PRK07471 DNA polymerase III su 27.2 2.1E+02 0.0045 32.4 7.9 32 480-514 139-170 (365)
260 KOG1132 Helicase of the DEAD s 27.0 5.8E+02 0.013 32.5 11.9 82 616-700 559-657 (945)
261 TIGR00708 cobA cob(I)alamin ad 26.9 99 0.0022 31.5 4.8 52 482-555 97-149 (173)
262 COG3973 Superfamily I DNA and 26.5 1.1E+02 0.0024 37.1 5.7 73 608-698 645-717 (747)
263 PRK07764 DNA polymerase III su 26.1 1E+02 0.0022 38.7 5.6 32 480-514 118-149 (824)
264 smart00493 TOPRIM topoisomeras 26.0 1.8E+02 0.0039 24.3 5.6 55 621-677 2-56 (76)
265 cd02976 NrdH NrdH-redoxin (Nrd 25.8 2.9E+02 0.0063 22.0 6.6 55 622-676 3-58 (73)
266 PF02463 SMC_N: RecF/RecN/SMC 24.6 65 0.0014 32.7 3.1 28 482-509 158-186 (220)
267 TIGR03590 PseG pseudaminic aci 24.5 2.4E+02 0.0051 30.3 7.4 69 630-706 68-136 (279)
268 PF13401 AAA_22: AAA domain; P 24.2 74 0.0016 29.0 3.1 25 484-510 89-113 (131)
269 TIGR00365 monothiol glutaredox 24.1 3.7E+02 0.0081 24.3 7.6 33 618-650 11-49 (97)
270 PRK10875 recD exonuclease V su 23.7 2.7E+02 0.0059 33.8 8.4 69 259-367 154-222 (615)
271 PRK09111 DNA polymerase III su 23.5 2.6E+02 0.0057 33.8 8.2 33 479-514 129-161 (598)
272 PRK06090 DNA polymerase III su 23.4 2.7E+02 0.0058 31.1 7.7 57 479-560 105-161 (319)
273 COG1200 RecG RecG-like helicas 23.4 1.3E+02 0.0029 36.7 5.7 75 618-693 311-389 (677)
274 PRK14956 DNA polymerase III su 23.3 1.1E+02 0.0024 36.1 4.9 30 482-514 121-150 (484)
275 TIGR02181 GRX_bact Glutaredoxi 22.8 3.7E+02 0.008 22.6 6.9 53 625-677 6-58 (79)
276 PRK14723 flhF flagellar biosyn 22.8 3.3E+02 0.0072 34.1 9.0 104 429-568 223-332 (767)
277 PRK07399 DNA polymerase III su 22.8 2.7E+02 0.0059 30.7 7.6 32 479-513 121-152 (314)
278 KOG0943 Predicted ubiquitin-pr 22.8 73 0.0016 41.2 3.3 47 415-461 2056-2105(3015)
279 PRK07993 DNA polymerase III su 22.7 2.6E+02 0.0057 31.1 7.6 65 442-514 64-137 (334)
280 PRK07276 DNA polymerase III su 22.7 2.4E+02 0.0052 31.1 7.1 59 448-514 68-133 (290)
281 PF02142 MGS: MGS-like domain 22.4 63 0.0014 29.0 2.2 41 635-675 23-67 (95)
282 cd02131 PA_hNAALADL2_like PA_h 22.4 1.6E+02 0.0035 29.6 5.2 60 619-680 16-77 (153)
283 KOG1991 Nuclear transport rece 22.3 75 0.0016 40.1 3.4 21 81-101 874-894 (1010)
284 cd00046 DEXDc DEAD-like helica 22.3 4.2E+02 0.0092 23.1 7.6 57 617-677 29-88 (144)
285 TIGR01447 recD exodeoxyribonuc 22.0 2.9E+02 0.0063 33.3 8.2 67 259-366 147-215 (586)
286 PRK08769 DNA polymerase III su 21.9 3.2E+02 0.0069 30.4 7.9 32 480-514 111-142 (319)
287 TIGR01073 pcrA ATP-dependent D 21.5 2.4E+02 0.0053 34.5 7.6 48 617-664 343-392 (726)
288 PRK09112 DNA polymerase III su 21.3 1.2E+02 0.0027 34.0 4.6 31 481-514 140-170 (351)
289 PF09026 CENP-B_dimeris: Centr 21.1 29 0.00062 32.3 -0.3 45 120-186 7-51 (101)
290 PRK07413 hypothetical protein; 21.0 1.4E+02 0.003 34.2 4.9 52 482-555 305-358 (382)
291 KOG1189 Global transcriptional 21.0 78 0.0017 39.0 3.1 8 68-75 849-856 (960)
292 PTZ00110 helicase; Provisional 20.8 3.9E+02 0.0085 31.7 8.9 71 619-694 204-283 (545)
293 PRK14971 DNA polymerase III su 20.8 3.1E+02 0.0067 33.3 8.1 33 479-514 118-150 (614)
294 PRK05642 DNA replication initi 20.6 66 0.0014 33.7 2.2 29 480-508 95-125 (234)
295 PF13177 DNA_pol3_delta2: DNA 20.4 2E+02 0.0044 28.3 5.5 85 449-559 65-154 (162)
No 1
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.1e-148 Score=1210.01 Aligned_cols=547 Identities=37% Similarity=0.677 Sum_probs=477.6
Q ss_pred CCCchhhhcCCCCCHHHHHHHhccc-ceeeeeecccCCCcceecCCC---cccC-----CCCCCcCCCCCCHHHHHHHHH
Q 004428 177 HASSFHEHFGYNLSKEEVDDLSKKK-LKYEWEVPAVDMSNCKWVGTG---ECFL-----KDDNLYSDYGLKPKLYKHWLD 247 (754)
Q Consensus 177 ~~d~F~~Hf~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~f~~l~L~~~L~~~~~~ 247 (754)
+.|||.+||+.+|.++-|+.+.++. .+.|...+++|.+....+... ..+| ....+...+.++++|.-..
T Consensus 130 ~~dpF~~hf~~el~s~~i~~~~a~~kt~~k~~~si~Gsl~~s~s~~~~~~k~~~~s~~~~s~~~i~s~~~kQ~l~~~~-- 207 (698)
T KOG2340|consen 130 SEDPFWSHFDDELGSKHIADLIARTKTTVKLEKSILGSLIFSGSRDLQLPKSPDCSNLGESYRSIGSLELKQRLLVES-- 207 (698)
T ss_pred ccChHHHHhhhhhhHHHHHHHHhcccccceeeecccccccccccccccccCCCCccchhhhhhhhHHHHHHHHHHHhh--
Confidence 3499999999999999999988762 233333377776432211100 0111 0011133344444432111
Q ss_pred HhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccc
Q 004428 248 IYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSA 327 (754)
Q Consensus 248 ~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~ 327 (754)
....+.....|++|.+++-+|++|+||+|...|- +|+..+|.+|||||||||+|+|++|++||+|++..+.+
T Consensus 208 -~~~~K~s~pltalQ~~L~~~m~~YrDl~y~~~s~------kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g- 279 (698)
T KOG2340|consen 208 -GVDQKKSEPLTALQKELFKIMFNYRDLLYPTRSQ------KNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEG- 279 (698)
T ss_pred -cccccccCcchHHHHHHHHHHHhhhhhccccccc------cccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcC-
Confidence 0001112224999999999999999999998874 46788999999999999999999999999998544332
Q ss_pred ccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHh-CCcc-cccccccccccccccCCCccccCcccchhhhccc
Q 004428 328 KEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRL-TPDA-HKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIR 405 (754)
Q Consensus 328 ~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L-~~~~-~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~ 405 (754)
.-++++|||||||||||||||||||.|++||+.|+.+ .+.. +|..|.||+||..+|+++++..++
T Consensus 280 ---~~~~~~frDQG~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~---------- 346 (698)
T KOG2340|consen 280 ---ENPDESFRDQGFTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPP---------- 346 (698)
T ss_pred ---CCCchhhhhcCCCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCC----------
Confidence 3345789999999999999999999999999999998 4433 355689999999999998654433
Q ss_pred ccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeE
Q 004428 406 GTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEV 485 (754)
Q Consensus 406 n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEi 485 (754)
..+||+||+++|.||+||+||||++|+||+||||++||+|||||||||||||+|+ .+|+|++++|||||||+
T Consensus 347 -------~~~kP~D~~~lf~GNtDD~FriGl~ftkKtikLys~fy~SDIlVaSPLGLRmil~-n~gdkkrd~dfLSSIEl 418 (698)
T KOG2340|consen 347 -------RAKKPEDFEELFSGNTDDAFRIGLAFTKKTIKLYSKFYKSDILVASPLGLRMILG-NTGDKKRDFDFLSSIEL 418 (698)
T ss_pred -------CCCCchhHHHHhcCCCcchhhhhHHHHHHHHHHHhhhcccCeEEecchhhhhhhc-CCCcccccchhhhhhhh
Confidence 7789999999999999999999999999999999999999999999999999999 57889999999999999
Q ss_pred EEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceE
Q 004428 486 LIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKV 565 (754)
Q Consensus 486 LVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~V 565 (754)
+||||||.||||||+||.+||+|||++|+++|||||||||+||||||+++||||||||++..|.+|++|+.+|+|++|+|
T Consensus 419 ~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv 498 (698)
T KOG2340|consen 419 LIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKV 498 (698)
T ss_pred hhhhhHHHHHHhhHHHHHHHHHHhhcCcccccCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccc-CcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCc
Q 004428 566 KLACEYK-GVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNAS 644 (754)
Q Consensus 566 kv~~~~~-g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~ 644 (754)
+..+... |+|+++..+|+|+|+|+.+.++.+.+|+||+||+.+|+|+|.+..++++|||||||||||||||||++++++
T Consensus 499 ~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~ 578 (698)
T KOG2340|consen 499 KARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEIS 578 (698)
T ss_pred eeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcc
Confidence 9987654 599999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC--------C
Q 004428 645 FCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH--------N 716 (754)
Q Consensus 645 f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~--------~ 716 (754)
|+.||||+++++++|||..|++|+.+||||||||||||||+|+||++||||+||.+|+||+|+|+|++++. .
T Consensus 579 F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~ 658 (698)
T KOG2340|consen 579 FVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDI 658 (698)
T ss_pred hHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999986431 3
Q ss_pred ceEEEEechhcHHHHHHHhCchHHHHhhhcCCCccccC
Q 004428 717 MTCTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVFC 754 (754)
Q Consensus 717 g~~~~L~sk~D~~~LErIVGt~ra~~m~~s~~~~~~F~ 754 (754)
++|++||||||.++||+|||++||++||+++++||+|.
T Consensus 659 ~t~~ilytKyD~i~Le~ivGterAA~l~~~kk~v~~f~ 696 (698)
T KOG2340|consen 659 FTVRILYTKYDRIRLENIVGTERAAALMSGKKEVYEFV 696 (698)
T ss_pred eEEEEEeechhhHHHHHhhhHHHHHHHhccchhhhhhh
Confidence 79999999999999999999999999999999999994
No 2
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=100.00 E-value=2.8e-133 Score=1104.40 Aligned_cols=432 Identities=53% Similarity=0.933 Sum_probs=405.0
Q ss_pred hcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccC
Q 004428 308 RTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFG 387 (754)
Q Consensus 308 ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg 387 (754)
|||++|+|||+||++.+....+....++++|||||||||||||||||+.|++||+.|++|++.. ..++|++||.++||
T Consensus 1 KtR~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~--~~~~nk~RF~~efg 78 (442)
T PF06862_consen 1 KTRDRVLKNNEKLAKANARGEEKKDDEDEFRDQGFTRPKVLILLPFRNSALRIVETLISLLPPG--KQVENKKRFEEEFG 78 (442)
T ss_pred CchhHHhhhHHHHHhhhhcccccccccchhhccCCCCceEEEEcccHHHHHHHHHHHHHHcCcc--chHHHHHHHHHHcC
Confidence 7899999999999987554433334568899999999999999999999999999999998874 34899999999999
Q ss_pred CCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHh
Q 004428 388 TKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMT 467 (754)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~ 467 (754)
.++++.+.+. +...+..||+||+++|+||+||+|||||+|+||++|||++||+|||||||||||+++|+
T Consensus 79 ~~~~~~~~~~-----------~~~~~~~kP~D~~~~F~GN~DD~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~ 147 (442)
T PF06862_consen 79 LPEDEDDDEE-----------PPEFKKSKPEDFKALFSGNNDDCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIG 147 (442)
T ss_pred CCccccchhh-----------hccccCCCchhHHHhcCCCccceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhc
Confidence 7755443311 11126789999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
.+++|++++||||||||||||+||+|+||||+||.+||+|||++|+++|||||||||+||||||+++|||||+||++.+
T Consensus 148 -~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~ 226 (442)
T PF06862_consen 148 -EEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQT 226 (442)
T ss_pred -cccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCC
Confidence 5667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeeccc--CcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhh-hcCCCcEEEE
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYK--GVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIK-DSIQGGIMLF 624 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~--g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~-~~~~~~tLIF 624 (754)
|++|+|++++|.|++|+|++.+.+. |++.++..+|+|+|+||+|+++.+++|+||+||+++|||.|. +...++||||
T Consensus 227 pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIf 306 (442)
T PF06862_consen 227 PEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIF 306 (442)
T ss_pred HHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEE
Confidence 9999999999999999999998887 999999999999999999999999999999999999999999 7889999999
Q ss_pred ecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCch
Q 004428 625 LSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFY 704 (754)
Q Consensus 625 v~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY 704 (754)
||||+||+||||||++++++|++||||+++++++|||++|++|+++|||||||+||||||.|+||+|||||+||++|+||
T Consensus 307 IPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY 386 (442)
T PF06862_consen 307 IPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFY 386 (442)
T ss_pred ecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCC-------CceEEEEechhcHHHHHHHhCchHHHHhhhcCCCcccc
Q 004428 705 PEIVNMLEGSH-------NMTCTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVF 753 (754)
Q Consensus 705 ~erigrt~ra~-------~g~~~~L~sk~D~~~LErIVGt~ra~~m~~s~~~~~~F 753 (754)
.|+|++++.+. .++|++|||+||+++||||||++||.+||+++++||+|
T Consensus 387 ~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt~ra~~ml~~~~~~~~F 442 (442)
T PF06862_consen 387 SELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGTERASKMLQSDKDTFEF 442 (442)
T ss_pred HHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCHHHHHHHhcCCCCeeeC
Confidence 99999987544 48999999999999999999999999999999999998
No 3
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-66 Score=567.38 Aligned_cols=361 Identities=19% Similarity=0.254 Sum_probs=300.7
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
.+|.+++|+.+|++++..+ ||.. |||||.++||+.+-|+||++||-|| +|||+||+||+|..|+-.
T Consensus 181 ~sF~~mNLSRPlLka~~~l----Gy~~-PTpIQ~a~IPvallgkDIca~A~TG---------sGKTAAF~lPiLERLlYr 246 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTL----GYKK-PTPIQVATIPVALLGKDICACAATG---------SGKTAAFALPILERLLYR 246 (691)
T ss_pred hhHHhcccchHHHHHHHhc----CCCC-CCchhhhcccHHhhcchhhheeccc---------CCchhhhHHHHHHHHhcC
Confidence 5689999999999999886 9986 9999999999999999999999998 999999999999999854
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
+. +-.-.+|||||||||||.||.....+|+.... + . +|
T Consensus 247 Pk-----------------------------~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~-I------~----~~-- 284 (691)
T KOG0338|consen 247 PK-----------------------------KVAATRVLVLVPTRELAIQVHSVTKQLAQFTD-I------T----VG-- 284 (691)
T ss_pred cc-----------------------------cCcceeEEEEeccHHHHHHHHHHHHHHHhhcc-c------e----ee--
Confidence 32 22346899999999999999999999986543 1 0 11
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
...|| +.++-+...|+ ..+||+|||||||+++|.+.
T Consensus 285 --------------------------------L~vGG-------L~lk~QE~~LR-----s~PDIVIATPGRlIDHlrNs 320 (691)
T KOG0338|consen 285 --------------------------------LAVGG-------LDLKAQEAVLR-----SRPDIVIATPGRLIDHLRNS 320 (691)
T ss_pred --------------------------------eeecC-------ccHHHHHHHHh-----hCCCEEEecchhHHHHhccC
Confidence 11222 12333344444 47999999999999999853
Q ss_pred hcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
..+ .|+|||||||||||||| .+|-+.+..|+ +++|+. ||||||||||+.
T Consensus 321 -----~sf-~ldsiEVLvlDEADRMLeegFademnEii---~lcpk~---------------------RQTmLFSATMte 370 (691)
T KOG0338|consen 321 -----PSF-NLDSIEVLVLDEADRMLEEGFADEMNEII---RLCPKN---------------------RQTMLFSATMTE 370 (691)
T ss_pred -----CCc-cccceeEEEechHHHHHHHHHHHHHHHHH---Hhcccc---------------------ccceeehhhhHH
Confidence 234 49999999999999999 45556666665 556875 999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhh-hcCCCcEEEEecc
Q 004428 549 EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIK-DSIQGGIMLFLSS 627 (754)
Q Consensus 549 einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~-~~~~~~tLIFv~S 627 (754)
+|..|++-.+++ +.+|.+.+.. .+++.++|.|.|+-..-- .. | ..+|+.|. +.-..+|||||.+
T Consensus 371 eVkdL~slSL~k-Pvrifvd~~~-----~~a~~LtQEFiRIR~~re-~d---R-----ea~l~~l~~rtf~~~~ivFv~t 435 (691)
T KOG0338|consen 371 EVKDLASLSLNK-PVRIFVDPNK-----DTAPKLTQEFIRIRPKRE-GD---R-----EAMLASLITRTFQDRTIVFVRT 435 (691)
T ss_pred HHHHHHHhhcCC-CeEEEeCCcc-----ccchhhhHHHheeccccc-cc---c-----HHHHHHHHHHhcccceEEEEeh
Confidence 999999876666 5577665542 578899999999975321 11 2 13455443 3457899999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
+..+.|++-.|--.|++++.|||.++|.+|..++..|+++++.||||||+|+ ||+||.||+.||||.+|...+.|+||
T Consensus 436 Kk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAs--RGLDI~gV~tVINy~mP~t~e~Y~HR 513 (691)
T KOG0338|consen 436 KKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVAS--RGLDIEGVQTVINYAMPKTIEHYLHR 513 (691)
T ss_pred HHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhh--ccCCccceeEEEeccCchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcHHHHHHHhCc
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDMLRLERIVGS 737 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~~~LErIVGt 737 (754)
||||+|+| .|.+++|+...|...|-.|+..
T Consensus 514 VGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 514 VGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred hhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 99999998 7999999999999888777765
No 4
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-64 Score=534.54 Aligned_cols=359 Identities=19% Similarity=0.280 Sum_probs=303.7
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
..+|++||+.|.|+++++++ |+.. ||+||+++||.++.|+||++.|+|| +|||.||+||||+||+.
T Consensus 60 ~~sf~dLgv~~~L~~ac~~l----~~~~-PT~IQ~~aiP~~L~g~dvIglAeTG---------SGKT~afaLPIl~~LL~ 125 (476)
T KOG0330|consen 60 FKSFADLGVHPELLEACQEL----GWKK-PTKIQSEAIPVALGGRDVIGLAETG---------SGKTGAFALPILQRLLQ 125 (476)
T ss_pred hcchhhcCcCHHHHHHHHHh----CcCC-CchhhhhhcchhhCCCcEEEEeccC---------CCchhhhHHHHHHHHHc
Confidence 57899999999999999997 7765 9999999999999999999999999 89999999999999996
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
.+ ..|.+|||+||||||.||.+.+..|+.... .|..
T Consensus 126 ~p--------------------------------~~~~~lVLtPtRELA~QI~e~fe~Lg~~ig-------lr~~----- 161 (476)
T KOG0330|consen 126 EP--------------------------------KLFFALVLTPTRELAQQIAEQFEALGSGIG-------LRVA----- 161 (476)
T ss_pred CC--------------------------------CCceEEEecCcHHHHHHHHHHHHHhccccC-------eEEE-----
Confidence 52 248999999999999999999999976543 1222
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
.+.|| +.+..+++.|. ..++|||||||||.+++++
T Consensus 162 ---------------------------------~lvGG---------~~m~~q~~~L~---kkPhilVaTPGrL~dhl~~ 196 (476)
T KOG0330|consen 162 ---------------------------------VLVGG---------MDMMLQANQLS---KKPHILVATPGRLWDHLEN 196 (476)
T ss_pred ---------------------------------EEecC---------chHHHHHHHhh---cCCCEEEeCcHHHHHHHHh
Confidence 23333 44555666665 5799999999999999985
Q ss_pred hhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
+ +.+ .|..+.+|||||||++| |.|-+.+..|++. +|.+ |||+|||||||
T Consensus 197 T-----kgf-~le~lk~LVlDEADrlLd~dF~~~ld~ILk~---ip~e---------------------rqt~LfsATMt 246 (476)
T KOG0330|consen 197 T-----KGF-SLEQLKFLVLDEADRLLDMDFEEELDYILKV---IPRE---------------------RQTFLFSATMT 246 (476)
T ss_pred c-----cCc-cHHHhHHHhhchHHhhhhhhhHHHHHHHHHh---cCcc---------------------ceEEEEEeecc
Confidence 3 345 49999999999999999 5555567777665 4654 99999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
..+..|....+.|+ .+|.+...| +++..++|.|.+++...+ ++.+-|.++ ......+||||++
T Consensus 247 ~kv~kL~rasl~~p-~~v~~s~ky-----~tv~~lkQ~ylfv~~k~K----~~yLV~ll~-------e~~g~s~iVF~~t 309 (476)
T KOG0330|consen 247 KKVRKLQRASLDNP-VKVAVSSKY-----QTVDHLKQTYLFVPGKDK----DTYLVYLLN-------ELAGNSVIVFCNT 309 (476)
T ss_pred hhhHHHHhhccCCC-eEEeccchh-----cchHHhhhheEecccccc----chhHHHHHH-------hhcCCcEEEEEec
Confidence 99999997777775 466555444 578889999999986532 433333222 2234789999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
+....++.-.|+..|+++..+||.|+|++|--+++.|++|.+.||||||+|+ ||+||++|++|||||+|.+...|+||
T Consensus 310 ~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaS--RGLDip~Vd~VVNyDiP~~skDYIHR 387 (476)
T KOG0330|consen 310 CNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVAS--RGLDIPHVDVVVNYDIPTHSKDYIHR 387 (476)
T ss_pred cchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhc--ccCCCCCceEEEecCCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcH---HHHHHHhCchH
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDM---LRLERIVGSAH 739 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~---~~LErIVGt~r 739 (754)
||||+|+| .|++++|+|.||. +++|..+|+++
T Consensus 388 vGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 388 VGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred cccccccCCCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 99999998 7999999999996 56677777765
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-63 Score=559.88 Aligned_cols=361 Identities=20% Similarity=0.308 Sum_probs=298.2
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
..|++|+|++.|+++|.++ ||.. |||||+++||.++.|+||++.|+|| +|||+||+||+|++|...
T Consensus 29 ~~F~~l~l~~~ll~~l~~~----gf~~-pt~IQ~~~IP~~l~g~Dvi~~A~TG---------sGKT~Af~lP~l~~l~~~ 94 (513)
T COG0513 29 PEFASLGLSPELLQALKDL----GFEE-PTPIQLAAIPLILAGRDVLGQAQTG---------TGKTAAFLLPLLQKILKS 94 (513)
T ss_pred CCHhhcCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------ChHHHHHHHHHHHHHhcc
Confidence 6799999999999999985 8876 9999999999999999999999998 999999999999997632
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
.. . -..| +|||+||||||.||.+.+..++.... ..|....|||.
T Consensus 95 ~~----------------------------~-~~~~-aLil~PTRELA~Qi~~~~~~~~~~~~------~~~~~~i~GG~ 138 (513)
T COG0513 95 VE----------------------------R-KYVS-ALILAPTRELAVQIAEELRKLGKNLG------GLRVAVVYGGV 138 (513)
T ss_pred cc----------------------------c-CCCc-eEEECCCHHHHHHHHHHHHHHHhhcC------CccEEEEECCC
Confidence 00 0 0123 99999999999999999999976541 12344555543
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
.+..+. .... .++||||||||||.++|..
T Consensus 139 -----------------------------------------------~~~~q~-~~l~--~~~~ivVaTPGRllD~i~~- 167 (513)
T COG0513 139 -----------------------------------------------SIRKQI-EALK--RGVDIVVATPGRLLDLIKR- 167 (513)
T ss_pred -----------------------------------------------CHHHHH-HHHh--cCCCEEEECccHHHHHHHc-
Confidence 333333 2233 2699999999999999983
Q ss_pred hcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
....|+.|++|||||||+|| |++++.+..|+..+ |.+ |||++||||++.
T Consensus 168 ------~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~---p~~---------------------~qtllfSAT~~~ 217 (513)
T COG0513 168 ------GKLDLSGVETLVLDEADRMLDMGFIDDIEKILKAL---PPD---------------------RQTLLFSATMPD 217 (513)
T ss_pred ------CCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhC---Ccc---------------------cEEEEEecCCCH
Confidence 35569999999999999999 87778888777665 543 999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecc
Q 004428 549 EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSS 627 (754)
Q Consensus 549 einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~S 627 (754)
.|..|++++++|+. .|.+.... .......|.|.|+.++.. +.|+. +|-.+.. ....++||||++
T Consensus 218 ~i~~l~~~~l~~p~-~i~v~~~~---~~~~~~~i~q~~~~v~~~------~~k~~-----~L~~ll~~~~~~~~IVF~~t 282 (513)
T COG0513 218 DIRELARRYLNDPV-EIEVSVEK---LERTLKKIKQFYLEVESE------EEKLE-----LLLKLLKDEDEGRVIVFVRT 282 (513)
T ss_pred HHHHHHHHHccCCc-EEEEcccc---ccccccCceEEEEEeCCH------HHHHH-----HHHHHHhcCCCCeEEEEeCc
Confidence 99999999999864 66665331 123577899999998742 13553 4444433 345579999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
+..+.+|...|.+.|++++.|||.++|.+|.+++..|++|+.+||||||+|+ ||+||++|.||||||+|.+++.|+||
T Consensus 283 k~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaa--RGiDi~~v~~VinyD~p~~~e~yvHR 360 (513)
T COG0513 283 KRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAA--RGLDIPDVSHVINYDLPLDPEDYVHR 360 (513)
T ss_pred HHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhh--ccCCccccceeEEccCCCCHHHheec
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechh-cHHHH---HHHhCch
Q 004428 708 VNMLEGSH-NMTCTVLFSRF-DMLRL---ERIVGSA 738 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~-D~~~L---ErIVGt~ 738 (754)
||||||+| .|.+++|++.. |...| |+.++..
T Consensus 361 iGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 361 IGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred cCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 99999998 79999999965 76555 5555443
No 6
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-63 Score=550.13 Aligned_cols=361 Identities=20% Similarity=0.255 Sum_probs=296.8
Q ss_pred CcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcC
Q 004428 231 LYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTR 310 (754)
Q Consensus 231 ~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr 310 (754)
.|+.++|++.+..+++.. |+.. |||||.+.||+++.|+|+++.|+|| +|||.||+||++.|+....
T Consensus 92 ~f~~~~ls~~~~~~lk~~----g~~~-PtpIQaq~wp~~l~GrD~v~iA~TG---------SGKTLay~lP~i~~l~~~~ 157 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQ----GFEK-PTPIQAQGWPIALSGRDLVGIARTG---------SGKTLAYLLPAIVHLNNEQ 157 (519)
T ss_pred hhhcccccHHHHHHHHhc----CCCC-CchhhhcccceeccCCceEEEeccC---------CcchhhhhhHHHHHHHhcc
Confidence 799999999999988875 8875 9999999999999999999999999 8999999999999998630
Q ss_pred CccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCc
Q 004428 311 DLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKK 390 (754)
Q Consensus 311 ~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~ 390 (754)
. ++ ..| ..|+||||+||||||.||...+.+++.... .|-.+.|||.+
T Consensus 158 ~-------~~------------------~~~-~~P~vLVL~PTRELA~QV~~~~~~~~~~~~-------~~~~cvyGG~~ 204 (519)
T KOG0331|consen 158 G-------KL------------------SRG-DGPIVLVLAPTRELAVQVQAEAREFGKSLR-------LRSTCVYGGAP 204 (519)
T ss_pred c-------cc------------------cCC-CCCeEEEEcCcHHHHHHHHHHHHHHcCCCC-------ccEEEEeCCCC
Confidence 0 00 011 369999999999999999999999986542 45677888763
Q ss_pred cccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhh
Q 004428 391 EEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAE 470 (754)
Q Consensus 391 ~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e 470 (754)
.. -+...++ +++||+|||||||+++|+.
T Consensus 205 ~~---------------------------------------------~Q~~~l~-----~gvdiviaTPGRl~d~le~-- 232 (519)
T KOG0331|consen 205 KG---------------------------------------------PQLRDLE-----RGVDVVIATPGRLIDLLEE-- 232 (519)
T ss_pred cc---------------------------------------------HHHHHHh-----cCCcEEEeCChHHHHHHHc--
Confidence 21 0223343 7899999999999999983
Q ss_pred cccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHH
Q 004428 471 ENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE 549 (754)
Q Consensus 471 ~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pe 549 (754)
....|+.+.+|||||||+|| |++=+.|..|+..+ |.. -|||||||||+|.+
T Consensus 233 -----g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i---~~~--------------------~rQtlm~saTwp~~ 284 (519)
T KOG0331|consen 233 -----GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQI---PRP--------------------DRQTLMFSATWPKE 284 (519)
T ss_pred -----CCccccceeEEEeccHHhhhccccHHHHHHHHHhc---CCC--------------------cccEEEEeeeccHH
Confidence 45569999999999999999 77666777777654 332 27999999999999
Q ss_pred HHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchh
Q 004428 550 INAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYF 629 (754)
Q Consensus 550 insL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~ 629 (754)
+..|+..++.||. +|.+.... .......|.|+...++.. ....|+. .+|..+.....++|||||.++.
T Consensus 285 v~~lA~~fl~~~~-~i~ig~~~---~~~a~~~i~qive~~~~~----~K~~~l~----~lL~~~~~~~~~KvIIFc~tkr 352 (519)
T KOG0331|consen 285 VRQLAEDFLNNPI-QINVGNKK---ELKANHNIRQIVEVCDET----AKLRKLG----KLLEDISSDSEGKVIIFCETKR 352 (519)
T ss_pred HHHHHHHHhcCce-EEEecchh---hhhhhcchhhhhhhcCHH----HHHHHHH----HHHHHHhccCCCcEEEEecchh
Confidence 9999999999863 44443211 123456788988877632 2222322 3443343335689999999999
Q ss_pred cHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhcc
Q 004428 630 EFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVN 709 (754)
Q Consensus 630 d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erig 709 (754)
.+.+|...|+..++++.+|||+.+|++|..+++.|++|+.+||||||||+ ||+||++|++|||||+|.+++.|+||||
T Consensus 353 ~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAa--RGLDi~dV~lVInydfP~~vEdYVHRiG 430 (519)
T KOG0331|consen 353 TCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAA--RGLDVPDVDLVINYDFPNNVEDYVHRIG 430 (519)
T ss_pred hHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEccccc--ccCCCccccEEEeCCCCCCHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ccCCCC-CceEEEEechhcHHHHH
Q 004428 710 MLEGSH-NMTCTVLFSRFDMLRLE 732 (754)
Q Consensus 710 rt~ra~-~g~~~~L~sk~D~~~LE 732 (754)
||||++ .|+|.+||+..+....-
T Consensus 431 RTGRa~~~G~A~tfft~~~~~~a~ 454 (519)
T KOG0331|consen 431 RTGRAGKKGTAITFFTSDNAKLAR 454 (519)
T ss_pred ccccCCCCceEEEEEeHHHHHHHH
Confidence 999987 79999999988765443
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=6.5e-59 Score=508.56 Aligned_cols=383 Identities=19% Similarity=0.222 Sum_probs=321.5
Q ss_pred CCCcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHH
Q 004428 220 GTGECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYL 299 (754)
Q Consensus 220 ~~~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~ 299 (754)
..|..+|.++.+..+.++...+++.++.. ||.. |||||+++||++++++|+|+.|.|| +|||+||+
T Consensus 235 ~kg~~lpnplrnwEE~~~P~e~l~~I~~~----~y~e-ptpIqR~aipl~lQ~rD~igvaETg---------sGktaaf~ 300 (673)
T KOG0333|consen 235 IKGGRLPNPLRNWEESGFPLELLSVIKKP----GYKE-PTPIQRQAIPLGLQNRDPIGVAETG---------SGKTAAFL 300 (673)
T ss_pred ecCCCCCccccChhhcCCCHHHHHHHHhc----CCCC-CchHHHhhccchhccCCeeeEEecc---------CCccccch
Confidence 34667899999999999999999988774 8875 9999999999999999999999998 89999999
Q ss_pred HHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccc
Q 004428 300 MHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHI 379 (754)
Q Consensus 300 Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk 379 (754)
+|+|-.|...+.. +. .+-.++| |+++||+||||||.||-++-.+++....
T Consensus 301 ipLl~~IsslP~~--------~~------------~en~~~g---pyaiilaptReLaqqIeeEt~kf~~~lg------- 350 (673)
T KOG0333|consen 301 IPLLIWISSLPPM--------AR------------LENNIEG---PYAIILAPTRELAQQIEEETNKFGKPLG------- 350 (673)
T ss_pred hhHHHHHHcCCCc--------ch------------hhhcccC---ceeeeechHHHHHHHHHHHHHHhccccc-------
Confidence 9999999877532 10 0112454 9999999999999999999999976542
Q ss_pred cccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCc
Q 004428 380 DRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASP 459 (754)
Q Consensus 380 ~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASP 459 (754)
-|.....| |.+|.-++++|- .+|+|+||||
T Consensus 351 ~r~vsvig-----------------------------------------------g~s~EEq~fqls---~gceiviatP 380 (673)
T KOG0333|consen 351 IRTVSVIG-----------------------------------------------GLSFEEQGFQLS---MGCEIVIATP 380 (673)
T ss_pred ceEEEEec-----------------------------------------------ccchhhhhhhhh---ccceeeecCc
Confidence 13333333 355666655543 5899999999
Q ss_pred hhHHHHHhhhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCC--CC----CchhhhhhhhcccC
Q 004428 460 INLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQ--HG----TDVMRIRQWYLDGY 532 (754)
Q Consensus 460 lgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~--h~----~DfsRvR~w~L~~~ 532 (754)
|||.+.+++ .+.-|+.+.++||||||+|+ |++=+.|..|+++| |... .| -+.-|++.-|-.
T Consensus 381 grLid~Len-------r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~m---Pssn~k~~tde~~~~~~~~~~~~~-- 448 (673)
T KOG0333|consen 381 GRLIDSLEN-------RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQM---PSSNAKPDTDEKEGEERVRKNFSS-- 448 (673)
T ss_pred hHHHHHHHH-------HHHHhccCceEeccchhhhhcccccHHHHHHHHhC---CccccCCCccchhhHHHHHhhccc--
Confidence 999999984 45669999999999999999 77778898888876 5432 12 246677766655
Q ss_pred CCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHH
Q 004428 533 SRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPK 612 (754)
Q Consensus 533 ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~ 612 (754)
+|+||||+||+||++|.+..|++.|++++ ..|.+ |.+.+..+.|+|.++.+..+ .+++ +|++.
T Consensus 449 ~k~yrqT~mftatm~p~verlar~ylr~p-v~vti-----g~~gk~~~rveQ~v~m~~ed-------~k~k----kL~ei 511 (673)
T KOG0333|consen 449 SKKYRQTVMFTATMPPAVERLARSYLRRP-VVVTI-----GSAGKPTPRVEQKVEMVSED-------EKRK----KLIEI 511 (673)
T ss_pred ccceeEEEEEecCCChHHHHHHHHHhhCC-eEEEe-----ccCCCCccchheEEEEecch-------HHHH----HHHHH
Confidence 45899999999999999999999999996 34433 56667888999999988643 2332 46665
Q ss_pred hhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeE
Q 004428 613 IKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNL 692 (754)
Q Consensus 613 l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~V 692 (754)
|......++||||+++..++-|+..|.+.++.++.+||..+|.+|..|++.|+.|...||||||+|+ ||+||++|+||
T Consensus 512 l~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAg--RGIDIpnVSlV 589 (673)
T KOG0333|consen 512 LESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAG--RGIDIPNVSLV 589 (673)
T ss_pred HHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccc--cCCCCCcccee
Confidence 6555678999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EEccCCCCCCchhhhccccCCCC-CceEEEEechhc
Q 004428 693 IIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFD 727 (754)
Q Consensus 693 IfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D 727 (754)
||||++.+.+.|.|||||||||| .|+|++|+|+.|
T Consensus 590 inydmaksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 590 INYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred eecchhhhHHHHHHHhccccccccCceeEEEeccch
Confidence 99999999999999999999999 699999999887
No 8
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-58 Score=504.94 Aligned_cols=389 Identities=18% Similarity=0.177 Sum_probs=311.4
Q ss_pred CcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHH
Q 004428 222 GECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMH 301 (754)
Q Consensus 222 ~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh 301 (754)
+..+|..+.+|++-.+.+.|..+++. +++.. |||+|+.+||++..|+|+++||+|| +|||+||++|
T Consensus 66 G~~~p~~i~~f~~~~l~~~l~~ni~~----~~~~~-ptpvQk~sip~i~~Grdl~acAqTG---------sGKT~aFLiP 131 (482)
T KOG0335|consen 66 GRDVPPHIPTFDEAILGEALAGNIKR----SGYTK-PTPVQKYSIPIISGGRDLMACAQTG---------SGKTAAFLIP 131 (482)
T ss_pred CCccCCCcccccccchhHHHhhcccc----ccccC-CCcceeeccceeecCCceEEEccCC---------CcchHHHHHH
Confidence 45667777789988888888877655 48875 9999999999999999999999998 8999999999
Q ss_pred HHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccc
Q 004428 302 SLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDR 381 (754)
Q Consensus 302 ~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~R 381 (754)
++.++++.+.. +-....|-.-|.+|||+||||||-||.++..+++..+. .+
T Consensus 132 ii~~~~~~~~~----------------------~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~-------~~ 182 (482)
T KOG0335|consen 132 IISYLLDEGPE----------------------DRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSG-------MK 182 (482)
T ss_pred HHHHHHhcCcc----------------------cCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhccccc-------ce
Confidence 99999976431 00011111369999999999999999999999987653 24
Q ss_pred cccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchh
Q 004428 382 FCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPIN 461 (754)
Q Consensus 382 f~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlg 461 (754)
-...||+.+. |-. ...+ ..++||+||||||
T Consensus 183 ~~~~ygg~~~-------------------------------------------~~q--~~~~-----~~gcdIlvaTpGr 212 (482)
T KOG0335|consen 183 SVVVYGGTDL-------------------------------------------GAQ--LRFI-----KRGCDILVATPGR 212 (482)
T ss_pred eeeeeCCcch-------------------------------------------hhh--hhhh-----ccCccEEEecCch
Confidence 4456665421 110 0111 2689999999999
Q ss_pred HHHHHhhhhcccccCcccCCceeEEEEecchhhh--hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccE
Q 004428 462 LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL--MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQT 539 (754)
Q Consensus 462 Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL--mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQT 539 (754)
|.++|+ +...-|+.+.+|||||||+|| |.+...+.+|+..+..+|+. .|||
T Consensus 213 L~d~~e-------~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~--------------------~~qt 265 (482)
T KOG0335|consen 213 LKDLIE-------RGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKN--------------------NRQT 265 (482)
T ss_pred hhhhhh-------cceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCcc--------------------ceeE
Confidence 999998 345569999999999999998 78889999999999988875 4999
Q ss_pred EEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhc---
Q 004428 540 VLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDS--- 616 (754)
Q Consensus 540 llFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~--- 616 (754)
+|||||++.+++.++..++.+. .+.+... .+......|.|.+..|....+ | .++|..|...
T Consensus 266 ~mFSAtfp~~iq~l~~~fl~~~--yi~laV~---rvg~~~~ni~q~i~~V~~~~k------r-----~~Lldll~~~~~~ 329 (482)
T KOG0335|consen 266 LLFSATFPKEIQRLAADFLKDN--YIFLAVG---RVGSTSENITQKILFVNEMEK------R-----SKLLDLLNKDDGP 329 (482)
T ss_pred EEEeccCChhhhhhHHHHhhcc--ceEEEEe---eeccccccceeEeeeecchhh------H-----HHHHHHhhcccCC
Confidence 9999999999999999998862 2444433 333567789999999875432 2 2344444321
Q ss_pred ------CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCC
Q 004428 617 ------IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQ 690 (754)
Q Consensus 617 ------~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~ 690 (754)
....|||||.+...+..|..+|...++++..||++.+|.+|.+|++.|++|++++||||.+++ |||||++|+
T Consensus 330 ~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~Vaa--RGlDi~~V~ 407 (482)
T KOG0335|consen 330 PSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAA--RGLDIPNVK 407 (482)
T ss_pred cccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhh--cCCCCCCCc
Confidence 123799999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred eEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhhcCCCcccc
Q 004428 691 NLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVF 753 (754)
Q Consensus 691 ~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~s~~~~~~F 753 (754)
||||||||.+.+.|+||||||||.+ .|.+++||...+..-.+.+ +.-|..+++.|-.|
T Consensus 408 hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L-----~~~l~ea~q~vP~w 466 (482)
T KOG0335|consen 408 HVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKAL-----VEILTEANQEVPQW 466 (482)
T ss_pred eeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHH-----HHHHHHhcccCcHH
Confidence 9999999999999999999999999 5899999995554333322 23455566665544
No 9
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-57 Score=480.52 Aligned_cols=367 Identities=19% Similarity=0.220 Sum_probs=300.1
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
...|+.|||++-|.+.+..+ |... |||||+.+||.|+.|+|+++||+|| +|||+||+||+||.+-+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l----~i~~-pTpiQ~~cIpkILeGrdcig~AkTG---------sGKT~AFaLPil~rLse 71 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKAL----GIKK-PTPIQQACIPKILEGRDCIGCAKTG---------SGKTAAFALPILNRLSE 71 (442)
T ss_pred cCchhhcCccHHHHHHHHHh----cCCC-CCchHhhhhHHHhcccccccccccC---------CCcchhhhHHHHHhhcc
Confidence 56799999999999999887 7766 9999999999999999999999998 89999999999999976
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
.+. .--+|||+||||||+||.+.|+.+..... .|..-.+||
T Consensus 72 dP~--------------------------------giFalvlTPTrELA~QiaEQF~alGk~l~-------lK~~vivGG 112 (442)
T KOG0340|consen 72 DPY--------------------------------GIFALVLTPTRELALQIAEQFIALGKLLN-------LKVSVIVGG 112 (442)
T ss_pred CCC--------------------------------cceEEEecchHHHHHHHHHHHHHhccccc-------ceEEEEEcc
Confidence 532 13479999999999999999999875432 133334444
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
. ..-.+++.|- ..+||||||||||.+++..
T Consensus 113 ~-----------------------------------------------d~i~qa~~L~---~rPHvVvatPGRlad~l~s 142 (442)
T KOG0340|consen 113 T-----------------------------------------------DMIMQAAILS---DRPHVVVATPGRLADHLSS 142 (442)
T ss_pred H-----------------------------------------------HHhhhhhhcc---cCCCeEecCcccccccccc
Confidence 3 3344566664 4699999999999999974
Q ss_pred hhcccccCcccCCceeEEEEecchhhhhcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILMQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
..+ -..--+..|++|||||||+||.+-+ +++..|++.+ |+. |||+|||||++
T Consensus 143 n~~---~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~l---P~~---------------------RQtLlfSATit 195 (442)
T KOG0340|consen 143 NLG---VCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECL---PKP---------------------RQTLLFSATIT 195 (442)
T ss_pred CCc---cchhhhhceeeEEecchhhhhccchhhHHhhhhccC---CCc---------------------cceEEEEeehh
Confidence 211 1233478999999999999996544 6777777664 764 99999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
..++.++.-...+. .......+.|+ .+...+.|-|..++.. ..|+ |.+ .+|..+.....+.++|||++
T Consensus 196 d~i~ql~~~~i~k~--~a~~~e~~~~v--stvetL~q~yI~~~~~----vkda---YLv-~~Lr~~~~~~~~simIFvnt 263 (442)
T KOG0340|consen 196 DTIKQLFGCPITKS--IAFELEVIDGV--STVETLYQGYILVSID----VKDA---YLV-HLLRDFENKENGSIMIFVNT 263 (442)
T ss_pred hHHHHhhcCCcccc--cceEEeccCCC--Cchhhhhhheeecchh----hhHH---HHH-HHHhhhhhccCceEEEEeeh
Confidence 99999986554431 12222222332 4677899999987642 2333 333 46666655567899999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
...+..|+-.|+..++..+++|+.+.|++|..|++.|+++.++||||||||+ ||+||+.|..||||++|.+|..|+||
T Consensus 264 tr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAs--RGLDIP~V~LVvN~diPr~P~~yiHR 341 (442)
T KOG0340|consen 264 TRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVAS--RGLDIPTVELVVNHDIPRDPKDYIHR 341 (442)
T ss_pred hHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhh--cCCCCCceeEEEecCCCCCHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcHH---HHHHHhCchH
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDML---RLERIVGSAH 739 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~~---~LErIVGt~r 739 (754)
+|||+|+| .|.++++++.+|.. ++|..||++.
T Consensus 342 vGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl 377 (442)
T KOG0340|consen 342 VGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKL 377 (442)
T ss_pred hcchhcccCCcceEEEechhhHHHHHHHHHHHhccc
Confidence 99999999 69999999999965 5588888864
No 10
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-56 Score=473.05 Aligned_cols=387 Identities=19% Similarity=0.215 Sum_probs=306.2
Q ss_pred CCCHHHHHHHhcccceeeeeecccCCCcceecCCCcccCCCCCCcCC-CCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHh
Q 004428 188 NLSKEEVDDLSKKKLKYEWEVPAVDMSNCKWVGTGECFLKDDNLYSD-YGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFF 266 (754)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~i 266 (754)
++++++++.+-.......|..+. .+....+|.+..+|.+ ++-.+.+++.+.+. ||.. |||||.+++
T Consensus 185 ~ls~~q~~~~r~en~~it~dd~K--------~gekrpIPnP~ctFddAFq~~pevmenIkK~----GFqK-PtPIqSQaW 251 (629)
T KOG0336|consen 185 NLSKEQLQEWRKENFNITCDDLK--------EGEKRPIPNPVCTFDDAFQCYPEVMENIKKT----GFQK-PTPIQSQAW 251 (629)
T ss_pred cCCHHHHHHHHHcCCcEEecccc--------cCCcccCCCCcCcHHHHHhhhHHHHHHHHhc----cCCC-CCcchhccc
Confidence 47778887776655444442111 1222358888888876 45668888888775 8876 999999999
Q ss_pred hhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCce
Q 004428 267 SLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPK 346 (754)
Q Consensus 267 p~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPk 346 (754)
|++++|+|+++.|||| +|||.+|+||.+-|+..+.. .|+| +..|.
T Consensus 252 PI~LQG~DliGVAQTg---------tgKtL~~L~pg~ihi~aqp~-------------------------~~~q-r~~p~ 296 (629)
T KOG0336|consen 252 PILLQGIDLIGVAQTG---------TGKTLAFLLPGFIHIDAQPK-------------------------RREQ-RNGPG 296 (629)
T ss_pred ceeecCcceEEEEecC---------CCcCHHHhccceeeeeccch-------------------------hhhc-cCCCc
Confidence 9999999999999998 89999999999999986632 2444 57899
Q ss_pred EEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccC
Q 004428 347 VLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGG 426 (754)
Q Consensus 347 VLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~G 426 (754)
+|+|+||||||+||--+.++.+... .+-.+.||+..- +
T Consensus 297 ~lvl~ptreLalqie~e~~kysyng--------~ksvc~ygggnR-------------------------~--------- 334 (629)
T KOG0336|consen 297 VLVLTPTRELALQIEGEVKKYSYNG--------LKSVCVYGGGNR-------------------------N--------- 334 (629)
T ss_pred eEEEeccHHHHHHHHhHHhHhhhcC--------cceEEEecCCCc-------------------------h---------
Confidence 9999999999999998888875432 344566765411 1
Q ss_pred CCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHH
Q 004428 427 NNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEV 505 (754)
Q Consensus 427 N~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~I 505 (754)
-+-..++ .+.+|||||||||.++.-. .+..|+||-+|||||||+|| |++=..+..|
T Consensus 335 -----------eqie~lk-----rgveiiiatPgrlndL~~~-------n~i~l~siTYlVlDEADrMLDMgFEpqIrki 391 (629)
T KOG0336|consen 335 -----------EQIEDLK-----RGVEIIIATPGRLNDLQMD-------NVINLASITYLVLDEADRMLDMGFEPQIRKI 391 (629)
T ss_pred -----------hHHHHHh-----cCceEEeeCCchHhhhhhc-------CeeeeeeeEEEEecchhhhhcccccHHHHHH
Confidence 0122344 6899999999999998762 57789999999999999999 6655566666
Q ss_pred HHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCccccc-ccceeE
Q 004428 506 VEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKV-LLNVRQ 584 (754)
Q Consensus 506 l~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v-~~~I~Q 584 (754)
|=-+ -| -|||+|-|||.|+-++.|+..|++++- .+ +.|.+.-+ ...|+|
T Consensus 392 lldi--RP----------------------DRqtvmTSATWP~~VrrLa~sY~Kep~---~v---~vGsLdL~a~~sVkQ 441 (629)
T KOG0336|consen 392 LLDI--RP----------------------DRQTVMTSATWPEGVRRLAQSYLKEPM---IV---YVGSLDLVAVKSVKQ 441 (629)
T ss_pred hhhc--CC----------------------cceeeeecccCchHHHHHHHHhhhCce---EE---Eecccceeeeeeeee
Confidence 5222 23 399999999999999999999999962 22 23544332 346899
Q ss_pred EEEEeccCcccchhHHHHHHHHHHHhHHhhh--cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHH
Q 004428 585 IYERFNADSIAKADDARLEYFTKKVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARV 662 (754)
Q Consensus 585 ~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~ 662 (754)
.+ .+... ..+++ ++..+.. +...++||||.++.-++.|..-|.-.||+.-+|||..+|++|.+|+.
T Consensus 442 ~i-~v~~d------~~k~~-----~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~ 509 (629)
T KOG0336|consen 442 NI-IVTTD------SEKLE-----IVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALE 509 (629)
T ss_pred eE-Eeccc------HHHHH-----HHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHH
Confidence 88 44422 11221 2222222 34579999999999999999999999999999999999999999999
Q ss_pred HHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHH
Q 004428 663 WFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRL 731 (754)
Q Consensus 663 ~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~L 731 (754)
.|++|+++||||||+|. ||+||.+|.||+|||.|.+.+-|+||||||||+| .|++++++++.|+...
T Consensus 510 ~~ksG~vrILvaTDlaS--RGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a 577 (629)
T KOG0336|consen 510 DFKSGEVRILVATDLAS--RGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMA 577 (629)
T ss_pred hhhcCceEEEEEechhh--cCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHH
Confidence 99999999999999999 9999999999999999999999999999999998 7999999999997544
No 11
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-53 Score=464.24 Aligned_cols=362 Identities=16% Similarity=0.222 Sum_probs=310.4
Q ss_pred CcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHH
Q 004428 222 GECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMH 301 (754)
Q Consensus 222 ~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh 301 (754)
+..+|+++.+|..+|+.+.|..++.+. .|.+ |||||.+++|..++++||+..|+|| +|+|+||+.|
T Consensus 215 g~s~~rpvtsfeh~gfDkqLm~airk~----Ey~k-ptpiq~qalptalsgrdvigIAktg---------SgktaAfi~p 280 (731)
T KOG0339|consen 215 GSSPPRPVTSFEHFGFDKQLMTAIRKS----EYEK-PTPIQCQALPTALSGRDVIGIAKTG---------SGKTAAFIWP 280 (731)
T ss_pred cCCCCCCcchhhhcCchHHHHHHHhhh----hccc-CCcccccccccccccccchheeecc---------CcchhHHHHH
Confidence 568999999999999999999988764 6776 9999999999999999999999998 8999999999
Q ss_pred HHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccc
Q 004428 302 SLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDR 381 (754)
Q Consensus 302 ~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~R 381 (754)
++-||+..... .++ ..|-.||||||||||.||.....+|+..-. .|
T Consensus 281 m~~himdq~eL------------------------~~g---~gPi~vilvPTrela~Qi~~eaKkf~K~yg-------l~ 326 (731)
T KOG0339|consen 281 MIVHIMDQPEL------------------------KPG---EGPIGVILVPTRELASQIFSEAKKFGKAYG-------LR 326 (731)
T ss_pred HHHHhcchhhh------------------------cCC---CCCeEEEEeccHHHHHHHHHHHHHhhhhcc-------ce
Confidence 99999865321 112 259999999999999999999999975422 36
Q ss_pred cccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchh
Q 004428 382 FCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPIN 461 (754)
Q Consensus 382 f~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlg 461 (754)
....|||.+.-+ +-+.|+ -++.||||||||
T Consensus 327 ~v~~ygGgsk~e---------------------------------------------Q~k~Lk-----~g~EivVaTPgR 356 (731)
T KOG0339|consen 327 VVAVYGGGSKWE---------------------------------------------QSKELK-----EGAEIVVATPGR 356 (731)
T ss_pred EEEeecCCcHHH---------------------------------------------HHHhhh-----cCCeEEEechHH
Confidence 667787763210 223444 589999999999
Q ss_pred HHHHHhhhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEE
Q 004428 462 LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTV 540 (754)
Q Consensus 462 Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTl 540 (754)
|++++.. ..-.|+.+-+|||||||+|+ |++-..|..|..|+. |. ||||
T Consensus 357 lid~Vkm-------Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir--pd----------------------rQtl 405 (731)
T KOG0339|consen 357 LIDMVKM-------KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR--PD----------------------RQTL 405 (731)
T ss_pred HHHHHHh-------hcccceeeeEEEEechhhhhccccHHHHHHHHhhcC--Cc----------------------ceEE
Confidence 9999863 23459999999999999999 777778999988862 43 9999
Q ss_pred EEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCc
Q 004428 541 LLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGG 620 (754)
Q Consensus 541 lFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~ 620 (754)
|||||+...|..|++.++..+ |++.. |.+......|.|+...+.. .+.++++|+.+|...+ ..+.
T Consensus 406 lFsaTf~~kIe~lard~L~dp---VrvVq---g~vgean~dITQ~V~V~~s------~~~Kl~wl~~~L~~f~---S~gk 470 (731)
T KOG0339|consen 406 LFSATFKKKIEKLARDILSDP---VRVVQ---GEVGEANEDITQTVSVCPS------EEKKLNWLLRHLVEFS---SEGK 470 (731)
T ss_pred EeeccchHHHHHHHHHHhcCC---eeEEE---eehhccccchhheeeeccC------cHHHHHHHHHHhhhhc---cCCc
Confidence 999999999999999998875 55432 3455667789999888764 3678998888754332 4689
Q ss_pred EEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCC
Q 004428 621 IMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPER 700 (754)
Q Consensus 621 tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~ 700 (754)
+||||..+.++..|.+.|+-.++++..+|+++.|.+|...++.|+.++++|||+||+|+ ||+||+.+++|||||+-.+
T Consensus 471 vlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaa--rgldI~~ikTVvnyD~ard 548 (731)
T KOG0339|consen 471 VLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAA--RGLDIPSIKTVVNYDFARD 548 (731)
T ss_pred EEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhh--cCCCccccceeecccccch
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCchhhhccccCCCC-CceEEEEechhcHH
Q 004428 701 KEFYPEIVNMLEGSH-NMTCTVLFSRFDML 729 (754)
Q Consensus 701 pefY~erigrt~ra~-~g~~~~L~sk~D~~ 729 (754)
.+.|.||||||||++ .|.+.+|+|..|+.
T Consensus 549 IdththrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 549 IDTHTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred hHHHHHHhhhcccccccceeeEEechhhHH
Confidence 999999999999998 79999999999975
No 12
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-54 Score=474.15 Aligned_cols=376 Identities=16% Similarity=0.228 Sum_probs=286.9
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCC-ccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSY-RDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y-~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
.-...|+|+..++.+|..+ ||.. |||||...+|.+..| .|||+.|.|| +|||.||.+|+|..++.
T Consensus 181 sAW~~l~lp~~iL~aL~~~----gFs~-Pt~IQsl~lp~ai~gk~DIlGaAeTG---------SGKTLAFGIPiv~~l~~ 246 (731)
T KOG0347|consen 181 SAWKNLFLPMEILRALSNL----GFSR-PTEIQSLVLPAAIRGKVDILGAAETG---------SGKTLAFGIPIVERLLE 246 (731)
T ss_pred HHHhcCCCCHHHHHHHHhc----CCCC-CccchhhcccHhhccchhcccccccC---------CCceeeecchhhhhhhh
Confidence 3456778999999999986 8986 999999999999999 8999999998 89999999999997776
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
+-+- ... ..+ -++.+.+|-+|||+||||||.||.++|..+++.++ + |....
T Consensus 247 ~s~~-----s~e-------------~~~-~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~-i------~v~si--- 297 (731)
T KOG0347|consen 247 SSDD-----SQE-------------LSN-TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQ-I------RVASI--- 297 (731)
T ss_pred ccch-----Hhh-------------hhh-HHhccCcceeEEecChHHHHHHHHHHHHHhccccC-e------EEEEe---
Confidence 5321 000 011 12334455699999999999999999999988765 1 33333
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
+| |++.+ |+-+|.. +.+||+|||||||+.+|.+
T Consensus 298 -----------------------------------~G---------GLavq-KQqRlL~--~~p~IVVATPGRlweli~e 330 (731)
T KOG0347|consen 298 -----------------------------------TG---------GLAVQ-KQQRLLN--QRPDIVVATPGRLWELIEE 330 (731)
T ss_pred -----------------------------------ec---------hhHHH-HHHHHHh--cCCCEEEecchHHHHHHHh
Confidence 33 35555 4666776 4899999999999999974
Q ss_pred hhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
+ ..-.-.++.|..|||||||||+ .+.|+.+..|+++||--++ +.-|||++||||++
T Consensus 331 ~----n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~-------------------~~qrQTlVFSATlt 387 (731)
T KOG0347|consen 331 D----NTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQK-------------------NRQRQTLVFSATLT 387 (731)
T ss_pred h----hhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhc-------------------ccccceEEEEEEee
Confidence 2 2233457899999999999999 7889999999999984443 34599999999998
Q ss_pred HHHHHHHHHhhcCC-------------------CceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHH
Q 004428 548 PEINAFFNHHCANY-------------------QGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKK 608 (754)
Q Consensus 548 peinsL~~~~~~N~-------------------~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~ 608 (754)
-....=.+...++. .|+=++...... ..++..|... ++.|+ ..+.|-.+.||+.
T Consensus 388 ~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q--~~ta~~l~Es--~I~C~--~~eKD~ylyYfl~- 460 (731)
T KOG0347|consen 388 LVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQ--SATASTLTES--LIECP--PLEKDLYLYYFLT- 460 (731)
T ss_pred hhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcc--hhHHHHHHHH--hhcCC--ccccceeEEEEEe-
Confidence 54332221111111 111111110000 0111112111 23442 2244555666654
Q ss_pred HhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCC
Q 004428 609 VFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRG 688 (754)
Q Consensus 609 iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkg 688 (754)
.++++|||||+|.....||.-+|+..+++...||..|.|++|.+++..|++...-||||||||| ||+||+|
T Consensus 461 -------ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAA--RGLDIp~ 531 (731)
T KOG0347|consen 461 -------RYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAA--RGLDIPG 531 (731)
T ss_pred -------ecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhh--ccCCCCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 689 IQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 689 V~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
|.|||+|++|...+.|+||.|||+||. .|..+.|+.+.+...|-++
T Consensus 532 V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL 578 (731)
T KOG0347|consen 532 VQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKL 578 (731)
T ss_pred cceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHH
Confidence 999999999999999999999999997 6888888889887666544
No 13
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.4e-52 Score=474.42 Aligned_cols=370 Identities=16% Similarity=0.165 Sum_probs=291.6
Q ss_pred CcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHH
Q 004428 222 GECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMH 301 (754)
Q Consensus 222 ~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh 301 (754)
+..+|+++.+|.+++|++.|+++|.++ |+.. |||+|.++||++++++||+++++|| +|||.+|+||
T Consensus 122 g~~~p~p~~~f~~~~l~~~l~~~l~~~----g~~~-pt~iQ~~aip~~l~G~dvI~~ApTG---------SGKTlaylLP 187 (545)
T PTZ00110 122 GENVPKPVVSFEYTSFPDYILKSLKNA----GFTE-PTPIQVQGWPIALSGRDMIGIAETG---------SGKTLAFLLP 187 (545)
T ss_pred CCCCCcccCCHhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhcCCCEEEEeCCC---------ChHHHHHHHH
Confidence 456788899999999999999999875 8876 9999999999999999999999998 8999999999
Q ss_pred HHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccc
Q 004428 302 SLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDR 381 (754)
Q Consensus 302 ~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~R 381 (754)
+|.|++..+.. .. -..|.||||+||||||.||.+.+.+++.... .+
T Consensus 188 ~l~~i~~~~~~--------------------------~~-~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~-------i~ 233 (545)
T PTZ00110 188 AIVHINAQPLL--------------------------RY-GDGPIVLVLAPTRELAEQIREQCNKFGASSK-------IR 233 (545)
T ss_pred HHHHHHhcccc--------------------------cC-CCCcEEEEECChHHHHHHHHHHHHHHhcccC-------cc
Confidence 99999754210 00 1258999999999999999999999875432 12
Q ss_pred cccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchh
Q 004428 382 FCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPIN 461 (754)
Q Consensus 382 f~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlg 461 (754)
....||+.+ ...+...|. .++|||||||++
T Consensus 234 ~~~~~gg~~-----------------------------------------------~~~q~~~l~---~~~~IlVaTPgr 263 (545)
T PTZ00110 234 NTVAYGGVP-----------------------------------------------KRGQIYALR---RGVEILIACPGR 263 (545)
T ss_pred EEEEeCCCC-----------------------------------------------HHHHHHHHH---cCCCEEEECHHH
Confidence 333455431 111112222 468999999999
Q ss_pred HHHHHhhhhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEE
Q 004428 462 LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTV 540 (754)
Q Consensus 462 Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTl 540 (754)
|.+++.. ....|+.|.+|||||||+|+. ++-..+..|+.. ++. .||+|
T Consensus 264 L~d~l~~-------~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~---~~~---------------------~~q~l 312 (545)
T PTZ00110 264 LIDFLES-------NVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQ---IRP---------------------DRQTL 312 (545)
T ss_pred HHHHHHc-------CCCChhhCcEEEeehHHhhhhcchHHHHHHHHHh---CCC---------------------CCeEE
Confidence 9999972 455799999999999999994 333445555544 333 38999
Q ss_pred EEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCc
Q 004428 541 LLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGG 620 (754)
Q Consensus 541 lFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~ 620 (754)
+||||++.++..+++.+|...+..+.+... . ......|+|.+..++.. .+...+ ..+|..+.. ...+
T Consensus 313 ~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~--~--l~~~~~i~q~~~~~~~~-------~k~~~L-~~ll~~~~~-~~~k 379 (545)
T PTZ00110 313 MWSATWPKEVQSLARDLCKEEPVHVNVGSL--D--LTACHNIKQEVFVVEEH-------EKRGKL-KMLLQRIMR-DGDK 379 (545)
T ss_pred EEEeCCCHHHHHHHHHHhccCCEEEEECCC--c--cccCCCeeEEEEEEech-------hHHHHH-HHHHHHhcc-cCCe
Confidence 999999999999999988754433333211 0 12345788888776532 122211 223333322 4579
Q ss_pred EEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCC
Q 004428 621 IMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPER 700 (754)
Q Consensus 621 tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~ 700 (754)
+||||++...+..|...|+..++++..+|+.++|.+|..+++.|++|+++||||||++. ||+||++|++||||++|.+
T Consensus 380 ~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~--rGIDi~~v~~VI~~d~P~s 457 (545)
T PTZ00110 380 ILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVAS--RGLDVKDVKYVINFDFPNQ 457 (545)
T ss_pred EEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhh--cCCCcccCCEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCchhhhccccCCCC-CceEEEEechhcHHHHHHHh
Q 004428 701 KEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIV 735 (754)
Q Consensus 701 pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIV 735 (754)
++.|+||+||+||++ .|.|++||++.|...+..++
T Consensus 458 ~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~ 493 (545)
T PTZ00110 458 IEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLV 493 (545)
T ss_pred HHHHHHHhcccccCCCCceEEEEECcchHHHHHHHH
Confidence 999999999999997 69999999998875554443
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.8e-51 Score=455.09 Aligned_cols=366 Identities=16% Similarity=0.220 Sum_probs=285.1
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
..+|++++|++.|+++|.+. ||.. |||+|+++||.+++|+||+++|+|| +|||.+|++|+|+++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~----g~~~-pt~iQ~~aip~il~g~dvi~~ApTG---------sGKTla~llp~l~~l~~ 72 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKK----GFHN-CTPIQALALPLTLAGRDVAGQAQTG---------TGKTMAFLTATFHYLLS 72 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCcEEEECCCC---------chHHHHHHHHHHHHHHh
Confidence 36799999999999999875 8876 9999999999999999999999998 99999999999999986
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
.+.. . ...-..|++|||+||||||.|+.+.+..++.... + +....+|+
T Consensus 73 ~~~~-----------------------~--~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~-~------~v~~~~gg 120 (423)
T PRK04837 73 HPAP-----------------------E--DRKVNQPRALIMAPTRELAVQIHADAEPLAQATG-L------KLGLAYGG 120 (423)
T ss_pred cccc-----------------------c--ccccCCceEEEECCcHHHHHHHHHHHHHHhccCC-c------eEEEEECC
Confidence 5321 0 0112358999999999999999999998865432 1 12222332
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
.. .......++ .++|||||||++|.+++..
T Consensus 121 ~~---------------------------------------------~~~~~~~l~-----~~~~IlV~TP~~l~~~l~~ 150 (423)
T PRK04837 121 DG---------------------------------------------YDKQLKVLE-----SGVDILIGTTGRLIDYAKQ 150 (423)
T ss_pred CC---------------------------------------------HHHHHHHhc-----CCCCEEEECHHHHHHHHHc
Confidence 21 111222222 4689999999999999862
Q ss_pred hhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
....|+.|.+|||||||.|+ +++...+..|+.. +|.. .-||+++||||++
T Consensus 151 -------~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~---~~~~-------------------~~~~~~l~SAT~~ 201 (423)
T PRK04837 151 -------NHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRR---MPPA-------------------NQRLNMLFSATLS 201 (423)
T ss_pred -------CCcccccccEEEEecHHHHhhcccHHHHHHHHHh---CCCc-------------------cceeEEEEeccCC
Confidence 34458999999999999998 4444555555544 4531 1289999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
..+..+...++.++ ..|.+.+.. .....|+|.+.... .+.+..++. .+ +......++||||++
T Consensus 202 ~~~~~~~~~~~~~p-~~i~v~~~~-----~~~~~i~~~~~~~~-------~~~k~~~l~-~l---l~~~~~~~~lVF~~t 264 (423)
T PRK04837 202 YRVRELAFEHMNNP-EYVEVEPEQ-----KTGHRIKEELFYPS-------NEEKMRLLQ-TL---IEEEWPDRAIIFANT 264 (423)
T ss_pred HHHHHHHHHHCCCC-EEEEEcCCC-----cCCCceeEEEEeCC-------HHHHHHHHH-HH---HHhcCCCeEEEEECC
Confidence 99999998888774 455554331 22345777655432 123443222 22 223346789999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
...+.+|.++|...++++..+|+.+++++|.++++.|++|+++|||+||+++ ||+||++|++||||++|.+++.|.||
T Consensus 265 ~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~--rGiDip~v~~VI~~d~P~s~~~yiqR 342 (423)
T PRK04837 265 KHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAA--RGLHIPAVTHVFNYDLPDDCEDYVHR 342 (423)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhh--cCCCccccCEEEEeCCCCchhheEec
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcHHHH---HHHhCch
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDMLRL---ERIVGSA 738 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~~~L---ErIVGt~ 738 (754)
+||+||+| .|.|++|++..|...+ |+.++.+
T Consensus 343 ~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 343 IGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred cccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 99999998 7999999998876555 4444443
No 15
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.3e-51 Score=461.26 Aligned_cols=362 Identities=17% Similarity=0.235 Sum_probs=288.2
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
++|++|+|++.|+++|.++ |+.. |||+|+++||.+++++|++++++|| +|||.+|+||+|+++...
T Consensus 1 ~~f~~l~l~~~l~~~l~~~----g~~~-pt~iQ~~ai~~il~g~dvlv~apTG---------sGKTla~~lpil~~l~~~ 66 (456)
T PRK10590 1 MSFDSLGLSPDILRAVAEQ----GYRE-PTPIQQQAIPAVLEGRDLMASAQTG---------TGKTAGFTLPLLQHLITR 66 (456)
T ss_pred CCHHHcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------CcHHHHHHHHHHHHhhhc
Confidence 3689999999999999885 8876 9999999999999999999999998 899999999999999754
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
.. ...+...++||||+|||+||.|+.+.+..++.... .+...
T Consensus 67 ~~--------------------------~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~-------~~~~~----- 108 (456)
T PRK10590 67 QP--------------------------HAKGRRPVRALILTPTRELAAQIGENVRDYSKYLN-------IRSLV----- 108 (456)
T ss_pred cc--------------------------ccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCC-------CEEEE-----
Confidence 21 01233457999999999999999999998864321 11112
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
+++| +.+.++..++. .++|||||||++|.+++..
T Consensus 109 ---------------------------------~~gg---------~~~~~~~~~l~---~~~~IiV~TP~rL~~~~~~- 142 (456)
T PRK10590 109 ---------------------------------VFGG---------VSINPQMMKLR---GGVDVLVATPGRLLDLEHQ- 142 (456)
T ss_pred ---------------------------------EECC---------cCHHHHHHHHc---CCCcEEEEChHHHHHHHHc-
Confidence 2332 33444444443 3689999999999998762
Q ss_pred hcccccCcccCCceeEEEEecchhhhhcC-chHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIILMQN-WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mLmQN-w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
....|+.|.+|||||||+|++.+ +..+..|+ +.+|.. ||+++||||+++
T Consensus 143 ------~~~~l~~v~~lViDEah~ll~~~~~~~i~~il---~~l~~~---------------------~q~l~~SAT~~~ 192 (456)
T PRK10590 143 ------NAVKLDQVEILVLDEADRMLDMGFIHDIRRVL---AKLPAK---------------------RQNLLFSATFSD 192 (456)
T ss_pred ------CCcccccceEEEeecHHHHhccccHHHHHHHH---HhCCcc---------------------CeEEEEeCCCcH
Confidence 33459999999999999999543 34455554 445653 899999999999
Q ss_pred HHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecc
Q 004428 549 EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSS 627 (754)
Q Consensus 549 einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~S 627 (754)
++..++..++.|+ ..+.+.... .....|.|.+..++.. .+. .+|..+.. ....++||||++
T Consensus 193 ~~~~l~~~~~~~~-~~i~~~~~~-----~~~~~i~~~~~~~~~~-------~k~-----~~l~~l~~~~~~~~~lVF~~t 254 (456)
T PRK10590 193 DIKALAEKLLHNP-LEIEVARRN-----TASEQVTQHVHFVDKK-------RKR-----ELLSQMIGKGNWQQVLVFTRT 254 (456)
T ss_pred HHHHHHHHHcCCC-eEEEEeccc-----ccccceeEEEEEcCHH-------HHH-----HHHHHHHHcCCCCcEEEEcCc
Confidence 9999999888875 345443221 2345678877765421 111 23333333 345789999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
+.++..|...|++.++.+..+|+.+++.+|.++++.|++|+++||||||+++ ||+||++|++||||++|.+++.|+||
T Consensus 255 ~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~--rGiDip~v~~VI~~~~P~~~~~yvqR 332 (456)
T PRK10590 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAA--RGLDIEELPHVVNYELPNVPEDYVHR 332 (456)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHh--cCCCcccCCEEEEeCCCCCHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcHH---HHHHHhCchH
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDML---RLERIVGSAH 739 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~~---~LErIVGt~r 739 (754)
+||+||++ .|.|++|++..|.. .+|++++.+.
T Consensus 333 ~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred ccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 99999987 79999999988854 4577766554
No 16
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.4e-51 Score=457.34 Aligned_cols=356 Identities=19% Similarity=0.221 Sum_probs=286.5
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
+.+|++++|++.|+++|.++ |+.. |||+|+++||.+++++|++++++|| +|||.+|+||+|+++..
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~----g~~~-~t~iQ~~ai~~~l~g~dvi~~a~TG---------sGKT~a~~lpil~~l~~ 68 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNEL----GYTE-MTPIQAQSLPAILAGKDVIAQAKTG---------SGKTAAFGLGLLQKLDV 68 (460)
T ss_pred CCChhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhcCCCEEEECCCC---------CcHHHHHHHHHHHHhhh
Confidence 35799999999999999885 8876 8999999999999999999999998 89999999999999842
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
. ...+++|||+||||||.|+.+.+..++..... .+....+|+
T Consensus 69 ~--------------------------------~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~------~~v~~~~Gg 110 (460)
T PRK11776 69 K--------------------------------RFRVQALVLCPTRELADQVAKEIRRLARFIPN------IKVLTLCGG 110 (460)
T ss_pred c--------------------------------cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC------cEEEEEECC
Confidence 2 12478999999999999999999988643210 122223332
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
. .+.. ++..+. .++|||||||++|.+++.+
T Consensus 111 ~-----------------------------------------------~~~~-~~~~l~--~~~~IvV~Tp~rl~~~l~~ 140 (460)
T PRK11776 111 V-----------------------------------------------PMGP-QIDSLE--HGAHIIVGTPGRILDHLRK 140 (460)
T ss_pred C-----------------------------------------------ChHH-HHHHhc--CCCCEEEEChHHHHHHHHc
Confidence 2 2221 122222 5799999999999999972
Q ss_pred hhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
....|+++.+|||||||+|+ |+++..+..|+..+ |.. ||+|+||||++
T Consensus 141 -------~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~---~~~---------------------~q~ll~SAT~~ 189 (460)
T PRK11776 141 -------GTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQA---PAR---------------------RQTLLFSATYP 189 (460)
T ss_pred -------CCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhC---Ccc---------------------cEEEEEEecCc
Confidence 34458999999999999999 66667777776654 543 89999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
+.+..+...++.++ -.+.+... .....|.|.|+.++.. .|+.... .+ +......++||||++
T Consensus 190 ~~~~~l~~~~~~~~-~~i~~~~~------~~~~~i~~~~~~~~~~-------~k~~~l~-~l---l~~~~~~~~lVF~~t 251 (460)
T PRK11776 190 EGIAAISQRFQRDP-VEVKVEST------HDLPAIEQRFYEVSPD-------ERLPALQ-RL---LLHHQPESCVVFCNT 251 (460)
T ss_pred HHHHHHHHHhcCCC-EEEEECcC------CCCCCeeEEEEEeCcH-------HHHHHHH-HH---HHhcCCCceEEEECC
Confidence 99999999988875 34444322 1234588988876532 2443221 22 223345789999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
...+..|...|++.++.+..+|+.++|.+|.+++..|++|+.+||||||+++ ||+||++|++||+|++|.+++.|+||
T Consensus 252 ~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~--rGiDi~~v~~VI~~d~p~~~~~yiqR 329 (460)
T PRK11776 252 KKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAA--RGLDIKALEAVINYELARDPEVHVHR 329 (460)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccc--cccchhcCCeEEEecCCCCHhHhhhh
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcHHHH---HHHhCc
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDMLRL---ERIVGS 737 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~~~L---ErIVGt 737 (754)
+||+||++ .|.|++|+++.|...+ ++.+|.
T Consensus 330 ~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 330 IGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred cccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999998 6999999999987664 555554
No 17
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.2e-51 Score=450.03 Aligned_cols=357 Identities=17% Similarity=0.248 Sum_probs=290.0
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
..|..+.|++..++++.++ ||.. .|++|+.++|+++.|+|+++.|+|| +|||.||+||++.+|+|.
T Consensus 82 ~~f~~~~LS~~t~kAi~~~----GF~~-MT~VQ~~ti~pll~gkDvl~~AKTG---------tGKTlAFLiPaie~l~k~ 147 (543)
T KOG0342|consen 82 FRFEEGSLSPLTLKAIKEM----GFET-MTPVQQKTIPPLLEGKDVLAAAKTG---------TGKTLAFLLPAIELLRKL 147 (543)
T ss_pred hHhhccccCHHHHHHHHhc----Cccc-hhHHHHhhcCccCCCccceeeeccC---------CCceeeehhHHHHHHHhc
Confidence 4477888999999999996 8987 7999999999999999999999998 999999999999999988
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
+-. .| ....||||+||||||.|+...+.+|......
T Consensus 148 ~~~------------------------~r----~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~---------------- 183 (543)
T KOG0342|consen 148 KFK------------------------PR----NGTGVLIICPTRELAMQIFAEAKELLKYHES---------------- 183 (543)
T ss_pred ccC------------------------CC----CCeeEEEecccHHHHHHHHHHHHHHHhhCCC----------------
Confidence 531 11 2468999999999999999999998643210
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
.-+..+.|||+ +..-+-+|-+ ++.|+|||||||.|+|+++
T Consensus 184 ----------------------------~~v~~viGG~~---------~~~e~~kl~k---~~niliATPGRLlDHlqNt 223 (543)
T KOG0342|consen 184 ----------------------------ITVGIVIGGNN---------FSVEADKLVK---GCNILIATPGRLLDHLQNT 223 (543)
T ss_pred ----------------------------cceEEEeCCcc---------chHHHHHhhc---cccEEEeCCchHHhHhhcC
Confidence 01234455542 3333444443 7999999999999999963
Q ss_pred hcccccCcccC-CceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 470 EENKEQDVDYL-SSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 470 e~~k~rd~dfL-SSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
.+ |+ ..+.+|||||||++| |+|-+.|..|+++| |+. |||+|||||++
T Consensus 224 -----~~--f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~l---pk~---------------------rqt~LFSAT~~ 272 (543)
T KOG0342|consen 224 -----SG--FLFRNLKCLVLDEADRLLDIGFEEDVEQIIKIL---PKQ---------------------RQTLLFSATQP 272 (543)
T ss_pred -----Cc--chhhccceeEeecchhhhhcccHHHHHHHHHhc---ccc---------------------ceeeEeeCCCc
Confidence 22 33 355899999999999 55557888888776 664 99999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCC-CcEEEEec
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQ-GGIMLFLS 626 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~-~~tLIFv~ 626 (754)
+++..|++-.+.--+ +.+.+.-.|. .....+|+|.|...+. +.||-. ++..|++... .++||||+
T Consensus 273 ~kV~~l~~~~L~~d~--~~v~~~d~~~-~~The~l~Qgyvv~~~-------~~~f~l----l~~~LKk~~~~~KiiVF~s 338 (543)
T KOG0342|consen 273 SKVKDLARGALKRDP--VFVNVDDGGE-RETHERLEQGYVVAPS-------DSRFSL----LYTFLKKNIKRYKIIVFFS 338 (543)
T ss_pred HHHHHHHHHhhcCCc--eEeecCCCCC-cchhhcccceEEeccc-------cchHHH----HHHHHHHhcCCceEEEEec
Confidence 999999988776533 4443332222 2467889999998654 456531 2222333333 89999999
Q ss_pred chhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhh
Q 004428 627 SYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPE 706 (754)
Q Consensus 627 Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~e 706 (754)
|..-..-+...|+...+++..||+-.+|.+|++.-..|++-+.-|||||||+| ||+||++|+.||-|++|++|+.|+|
T Consensus 339 T~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaA--RGlD~P~V~~VvQ~~~P~d~~~YIH 416 (543)
T KOG0342|consen 339 TCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAA--RGLDIPDVDWVVQYDPPSDPEQYIH 416 (543)
T ss_pred hhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhh--ccCCCCCceEEEEeCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hccccCCCC-CceEEEEechhcHHHH
Q 004428 707 IVNMLEGSH-NMTCTVLFSRFDMLRL 731 (754)
Q Consensus 707 rigrt~ra~-~g~~~~L~sk~D~~~L 731 (754)
|||||||.| .|.+.-|.++|+..=|
T Consensus 417 RvGRTaR~gk~G~alL~l~p~El~Fl 442 (543)
T KOG0342|consen 417 RVGRTAREGKEGKALLLLAPWELGFL 442 (543)
T ss_pred HhccccccCCCceEEEEeChhHHHHH
Confidence 999999987 6899999999986544
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.2e-50 Score=469.80 Aligned_cols=354 Identities=15% Similarity=0.221 Sum_probs=286.5
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
.++|.+++|++.|+++|.++ ||.. |||+|+++||.+++++||++.++|| +|||.||+||+|+++..
T Consensus 5 ~~~f~~l~L~~~ll~al~~~----G~~~-ptpiQ~~ai~~ll~g~dvl~~ApTG---------sGKT~af~lpll~~l~~ 70 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDL----GYEK-PSPIQAECIPHLLNGRDVLGMAQTG---------SGKTAAFSLPLLHNLDP 70 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHHcCCCEEEEcCCC---------CcHHHHHHHHHHHHhhh
Confidence 45699999999999999885 8876 9999999999999999999999998 99999999999998742
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
. ...|+||||+|||+||.|+.+.+.++...... .+....||+
T Consensus 71 ~--------------------------------~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~------i~v~~~~gG 112 (629)
T PRK11634 71 E--------------------------------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRG------VNVVALYGG 112 (629)
T ss_pred c--------------------------------cCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCC------ceEEEEECC
Confidence 2 12589999999999999999999988643211 122233333
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
. .+.. +++.+. .+++|||+||++|.++|.
T Consensus 113 ~-----------------------------------------------~~~~-q~~~l~--~~~~IVVgTPgrl~d~l~- 141 (629)
T PRK11634 113 Q-----------------------------------------------RYDV-QLRALR--QGPQIVVGTPGRLLDHLK- 141 (629)
T ss_pred c-----------------------------------------------CHHH-HHHHhc--CCCCEEEECHHHHHHHHH-
Confidence 2 1221 122222 478999999999999997
Q ss_pred hhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
+....|+.|.+|||||||.|+ |++++.+..|+..+ |.. +||++||||++
T Consensus 142 ------r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~l---p~~---------------------~q~llfSAT~p 191 (629)
T PRK11634 142 ------RGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI---PEG---------------------HQTALFSATMP 191 (629)
T ss_pred ------cCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhC---CCC---------------------CeEEEEEccCC
Confidence 244569999999999999998 77777777777654 653 89999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
+.+..+..+++.++ ..|.+... ......|.|.|..+... .+.. .+...|.......+||||++
T Consensus 192 ~~i~~i~~~~l~~~-~~i~i~~~-----~~~~~~i~q~~~~v~~~-------~k~~----~L~~~L~~~~~~~~IVF~~t 254 (629)
T PRK11634 192 EAIRRITRRFMKEP-QEVRIQSS-----VTTRPDISQSYWTVWGM-------RKNE----ALVRFLEAEDFDAAIIFVRT 254 (629)
T ss_pred hhHHHHHHHHcCCC-eEEEccCc-----cccCCceEEEEEEechh-------hHHH----HHHHHHHhcCCCCEEEEecc
Confidence 99999999999885 35554322 12345688888876532 1222 12222233445789999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
+..+.+|.++|.+.++.+..+|+.++|.+|.+++..|++|+++|||+||+++ ||+||++|.+||||++|.+++.|+||
T Consensus 255 k~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~a--rGIDip~V~~VI~~d~P~~~e~yvqR 332 (629)
T PRK11634 255 KNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA--RGLDVERISLVVNYDIPMDSESYVHR 332 (629)
T ss_pred HHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHh--cCCCcccCCEEEEeCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
+||+||++ .|.|+++++..|...|..|
T Consensus 333 iGRtGRaGr~G~ai~~v~~~e~~~l~~i 360 (629)
T PRK11634 333 IGRTGRAGRAGRALLFVENRERRLLRNI 360 (629)
T ss_pred hccccCCCCcceEEEEechHHHHHHHHH
Confidence 99999998 5999999998876555443
No 19
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4.3e-53 Score=449.62 Aligned_cols=366 Identities=16% Similarity=0.180 Sum_probs=290.3
Q ss_pred CCcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHH
Q 004428 221 TGECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLM 300 (754)
Q Consensus 221 ~~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~L 300 (754)
+|..+|.++.+|.++.+...|+..+++ +|... |||||-+-+|.+++|||+++.|-|| +|||..|+|
T Consensus 161 eGd~ipPPIksF~eMKFP~~~L~~lk~----KGI~~-PTpIQvQGlPvvLsGRDmIGIAfTG---------SGKTlvFvL 226 (610)
T KOG0341|consen 161 EGDDIPPPIKSFKEMKFPKPLLRGLKK----KGIVH-PTPIQVQGLPVVLSGRDMIGIAFTG---------SGKTLVFVL 226 (610)
T ss_pred eCCCCCCchhhhhhccCCHHHHHHHHh----cCCCC-CCceeecCcceEeecCceeeEEeec---------CCceEEEeH
Confidence 467899999999999999999998877 47775 9999999999999999999999998 899999999
Q ss_pred HHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccc
Q 004428 301 HSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHID 380 (754)
Q Consensus 301 h~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~ 380 (754)
|++--.+..-- +| +--|. ..|-.||+||.||||.|+.+.+..+....+... ....
T Consensus 227 P~imf~LeqE~-------~l--------------Pf~~~---EGP~gLiicPSRELArQt~~iie~~~~~L~e~g-~P~l 281 (610)
T KOG0341|consen 227 PVIMFALEQEM-------ML--------------PFARG---EGPYGLIICPSRELARQTHDIIEQYVAALQEAG-YPEL 281 (610)
T ss_pred HHHHHHHHHHh-------cC--------------ccccC---CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcC-Chhh
Confidence 99887764310 00 11122 249999999999999999999988765432100 0111
Q ss_pred ccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCch
Q 004428 381 RFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPI 460 (754)
Q Consensus 381 Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPl 460 (754)
|..-+. | |+.+. .++..-. .+.+|+|||||
T Consensus 282 Rs~Lci---------------------------------------G--------G~~v~-eql~~v~--~GvHivVATPG 311 (610)
T KOG0341|consen 282 RSLLCI---------------------------------------G--------GVPVR-EQLDVVR--RGVHIVVATPG 311 (610)
T ss_pred hhhhhh---------------------------------------c--------CccHH-HHHHHHh--cCeeEEEcCcc
Confidence 222222 2 34433 3444444 69999999999
Q ss_pred hHHHHHhhhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccE
Q 004428 461 NLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQT 539 (754)
Q Consensus 461 gLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQT 539 (754)
||.+++.. ....|.-+.+|+|||||||+ |++-+.+.+||.++.. -|||
T Consensus 312 RL~DmL~K-------K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~------------------------QRQT 360 (610)
T KOG0341|consen 312 RLMDMLAK-------KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKG------------------------QRQT 360 (610)
T ss_pred hHHHHHHH-------hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhh------------------------hhhe
Confidence 99999972 24568889999999999999 8888899999999743 3999
Q ss_pred EEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCC
Q 004428 540 VLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQG 619 (754)
Q Consensus 540 llFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~ 619 (754)
||||||||..|+.+++.-+..+ |.+.....| .....|-|....|. .+++.-|++. ++.....
T Consensus 361 LLFSATMP~KIQ~FAkSALVKP---vtvNVGRAG---AAsldViQevEyVk-------qEaKiVylLe-----CLQKT~P 422 (610)
T KOG0341|consen 361 LLFSATMPKKIQNFAKSALVKP---VTVNVGRAG---AASLDVIQEVEYVK-------QEAKIVYLLE-----CLQKTSP 422 (610)
T ss_pred eeeeccccHHHHHHHHhhcccc---eEEeccccc---ccchhHHHHHHHHH-------hhhhhhhHHH-----HhccCCC
Confidence 9999999999999998877664 333322223 23334444333332 1345544332 3344568
Q ss_pred cEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC
Q 004428 620 GIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE 699 (754)
Q Consensus 620 ~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~ 699 (754)
++|||+-.+.|++.|..||--.|+.+++|||..+|.+|.+|...|+.|+..||||||+|. .|+|+++|+||||||+|.
T Consensus 423 pVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVAS--KGLDFp~iqHVINyDMP~ 500 (610)
T KOG0341|consen 423 PVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVAS--KGLDFPDIQHVINYDMPE 500 (610)
T ss_pred ceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchh--ccCCCccchhhccCCChH
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCchhhhccccCCCC-CceEEEEechh
Q 004428 700 RKEFYPEIVNMLEGSH-NMTCTVLFSRF 726 (754)
Q Consensus 700 ~pefY~erigrt~ra~-~g~~~~L~sk~ 726 (754)
..+-|+||||||||++ .|.+++|+++.
T Consensus 501 eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 501 EIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred HHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 9999999999999998 69999999865
No 20
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4e-50 Score=456.43 Aligned_cols=369 Identities=16% Similarity=0.184 Sum_probs=287.4
Q ss_pred CcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHH
Q 004428 222 GECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMH 301 (754)
Q Consensus 222 ~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh 301 (754)
|..+|+++.+|..++|++.|+++|.+. ||.. |||+|.++||.+++++|++++++|| +|||.+|+||
T Consensus 113 g~~~p~pi~~f~~~~l~~~l~~~L~~~----g~~~-ptpiQ~~aip~il~g~dviv~ApTG---------SGKTlayllP 178 (518)
T PLN00206 113 GEAVPPPILSFSSCGLPPKLLLNLETA----GYEF-PTPIQMQAIPAALSGRSLLVSADTG---------SGKTASFLVP 178 (518)
T ss_pred CCCCCchhcCHHhCCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhcCCCEEEEecCC---------CCccHHHHHH
Confidence 456788899999999999999999774 8876 9999999999999999999999998 8999999999
Q ss_pred HHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccc
Q 004428 302 SLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDR 381 (754)
Q Consensus 302 ~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~R 381 (754)
+|+|++..+..- . ..-..|++|||+||||||.||.+.+..+..... .+
T Consensus 179 il~~l~~~~~~~-------------~------------~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~-------~~ 226 (518)
T PLN00206 179 IISRCCTIRSGH-------------P------------SEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLP-------FK 226 (518)
T ss_pred HHHHHHhhcccc-------------c------------cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC-------ce
Confidence 999998543210 0 011368999999999999999999988864321 11
Q ss_pred cccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchh
Q 004428 382 FCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPIN 461 (754)
Q Consensus 382 f~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlg 461 (754)
....+||.. ...+..++. .++|||||||++
T Consensus 227 ~~~~~gG~~-----------------------------------------------~~~q~~~l~---~~~~IiV~TPgr 256 (518)
T PLN00206 227 TALVVGGDA-----------------------------------------------MPQQLYRIQ---QGVELIVGTPGR 256 (518)
T ss_pred EEEEECCcc-----------------------------------------------hHHHHHHhc---CCCCEEEECHHH
Confidence 222333321 111112222 468999999999
Q ss_pred HHHHHhhhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEE
Q 004428 462 LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTV 540 (754)
Q Consensus 462 Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTl 540 (754)
|.+++.. ....|+.|.+|||||||+|+ +++.+.+..|+.. +|. +|++
T Consensus 257 L~~~l~~-------~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~---l~~----------------------~q~l 304 (518)
T PLN00206 257 LIDLLSK-------HDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQA---LSQ----------------------PQVL 304 (518)
T ss_pred HHHHHHc-------CCccchheeEEEeecHHHHhhcchHHHHHHHHHh---CCC----------------------CcEE
Confidence 9999972 24569999999999999999 4444555555544 343 7999
Q ss_pred EEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCc
Q 004428 541 LLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGG 620 (754)
Q Consensus 541 lFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~ 620 (754)
+||||+++++..+.+.++.++. .|.+... ......++|.+..++... +...+. .+|.... ...++
T Consensus 305 ~~SATl~~~v~~l~~~~~~~~~-~i~~~~~-----~~~~~~v~q~~~~~~~~~-------k~~~l~-~~l~~~~-~~~~~ 369 (518)
T PLN00206 305 LFSATVSPEVEKFASSLAKDII-LISIGNP-----NRPNKAVKQLAIWVETKQ-------KKQKLF-DILKSKQ-HFKPP 369 (518)
T ss_pred EEEeeCCHHHHHHHHHhCCCCE-EEEeCCC-----CCCCcceeEEEEeccchh-------HHHHHH-HHHHhhc-ccCCC
Confidence 9999999999999998887742 3333221 123456788877765321 211111 1222111 23468
Q ss_pred EEEEecchhcHHHHHHHHHh-CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC
Q 004428 621 IMLFLSSYFEFVRLRNFLKS-QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE 699 (754)
Q Consensus 621 tLIFv~Sy~d~vrlrn~Lk~-~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~ 699 (754)
+||||++...+..|.+.|.. .++.+..+|+.+++.+|..++..|++|+++|||||++++ ||+||++|++||||++|.
T Consensus 370 ~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~--rGiDip~v~~VI~~d~P~ 447 (518)
T PLN00206 370 AVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLG--RGVDLLRVRQVIIFDMPN 447 (518)
T ss_pred EEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhh--ccCCcccCCEEEEeCCCC
Confidence 99999999999999999975 699999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCchhhhccccCCCC-CceEEEEechhcHHHHHHHh
Q 004428 700 RKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIV 735 (754)
Q Consensus 700 ~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIV 735 (754)
+++.|+||+||+||.+ .|.|++|++..|...+..++
T Consensus 448 s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 448 TIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred CHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHH
Confidence 9999999999999998 69999999998876665554
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.7e-50 Score=458.15 Aligned_cols=362 Identities=18% Similarity=0.227 Sum_probs=285.1
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
.+|++|+|++.|+++|.++ ||.. |||||+++||.+++++||+++++|| +|||.+|+||+|+++++.
T Consensus 9 ~~f~~l~l~~~l~~~L~~~----g~~~-ptpiQ~~~ip~~l~G~Dvi~~ApTG---------SGKTlafllpil~~l~~~ 74 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESA----GFTR-CTPIQALTLPVALPGGDVAGQAQTG---------TGKTLAFLVAVMNRLLSR 74 (572)
T ss_pred CChhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEEcCCC---------CcHHHHHHHHHHHHHHhc
Confidence 4699999999999999875 8876 9999999999999999999999998 999999999999999864
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
... .+..-..|++|||+||||||.|+.+.+.+++.... .+....||+.
T Consensus 75 ~~~-------------------------~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~-------i~v~~l~Gg~ 122 (572)
T PRK04537 75 PAL-------------------------ADRKPEDPRALILAPTRELAIQIHKDAVKFGADLG-------LRFALVYGGV 122 (572)
T ss_pred ccc-------------------------cccccCCceEEEEeCcHHHHHHHHHHHHHHhccCC-------ceEEEEECCC
Confidence 210 00111258999999999999999999998865431 1223334432
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
.+.. +.+++. .++|||||||++|.+++..
T Consensus 123 -----------------------------------------------~~~~-q~~~l~--~~~dIiV~TP~rL~~~l~~- 151 (572)
T PRK04537 123 -----------------------------------------------DYDK-QRELLQ--QGVDVIIATPGRLIDYVKQ- 151 (572)
T ss_pred -----------------------------------------------CHHH-HHHHHh--CCCCEEEECHHHHHHHHHh-
Confidence 2221 222222 3689999999999999863
Q ss_pred hcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
.....|+.|++|||||||.|+ ++++.++..|+.. +|.. ..||+|+||||++.
T Consensus 152 -----~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~---lp~~-------------------~~~q~ll~SATl~~ 204 (572)
T PRK04537 152 -----HKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRR---MPER-------------------GTRQTLLFSATLSH 204 (572)
T ss_pred -----ccccchhheeeeEecCHHHHhhcchHHHHHHHHHh---cccc-------------------cCceEEEEeCCccH
Confidence 234468999999999999998 4455566665554 4541 13899999999999
Q ss_pred HHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecch
Q 004428 549 EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSY 628 (754)
Q Consensus 549 einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy 628 (754)
.+..+...++.++ ..+.+.... .....+.|.++... .+.+..+ ++..+......++||||++.
T Consensus 205 ~v~~l~~~~l~~p-~~i~v~~~~-----~~~~~i~q~~~~~~-------~~~k~~~----L~~ll~~~~~~k~LVF~nt~ 267 (572)
T PRK04537 205 RVLELAYEHMNEP-EKLVVETET-----ITAARVRQRIYFPA-------DEEKQTL----LLGLLSRSEGARTMVFVNTK 267 (572)
T ss_pred HHHHHHHHHhcCC-cEEEecccc-----ccccceeEEEEecC-------HHHHHHH----HHHHHhcccCCcEEEEeCCH
Confidence 9999999888774 344443221 12346778776542 1334432 22223334567899999999
Q ss_pred hcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhc
Q 004428 629 FEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIV 708 (754)
Q Consensus 629 ~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~eri 708 (754)
..+..|..+|.+.++.+..+|+.+++.+|.++++.|++|+++|||+||+++ ||+||++|++||||++|.+++.|+||+
T Consensus 268 ~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~a--rGIDip~V~~VInyd~P~s~~~yvqRi 345 (572)
T PRK04537 268 AFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAA--RGLHIDGVKYVYNYDLPFDAEDYVHRI 345 (572)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhh--cCCCccCCCEEEEcCCCCCHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred cccCCCC-CceEEEEechhcHHHHHHH
Q 004428 709 NMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 709 grt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
||+||.+ .|.|++|++..|...|..|
T Consensus 346 GRaGR~G~~G~ai~~~~~~~~~~l~~i 372 (572)
T PRK04537 346 GRTARLGEEGDAISFACERYAMSLPDI 372 (572)
T ss_pred cccccCCCCceEEEEecHHHHHHHHHH
Confidence 9999987 7999999998887666544
No 22
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-50 Score=416.24 Aligned_cols=358 Identities=16% Similarity=0.233 Sum_probs=291.1
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHH
Q 004428 227 KDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHI 306 (754)
Q Consensus 227 ~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv 306 (754)
+...+|+++||++.|++.+-.. ||.. |+.||+.++|.|+.|+||++.|++| ||||++|.+-+|+-+
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~y----Gfek-PS~IQqrAi~~IlkGrdViaQaqSG---------TGKTa~~si~vlq~~ 89 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAY----GFEK-PSAIQQRAIPQILKGRDVIAQAQSG---------TGKTATFSISVLQSL 89 (400)
T ss_pred ccccchhhcCchHHHHHHHHHh----ccCC-chHHHhhhhhhhhcccceEEEecCC---------CCceEEEEeeeeeec
Confidence 3467899999999999999986 8876 9999999999999999999999998 999999999988766
Q ss_pred hhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccccc
Q 004428 307 FRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEF 386 (754)
Q Consensus 307 ~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ef 386 (754)
.-+ -...+||||.||||||.||.+.+..|+.+.. | .-| .+.
T Consensus 90 d~~--------------------------------~r~tQ~lilsPTRELa~Qi~~vi~alg~~mn---v---q~h-aci 130 (400)
T KOG0328|consen 90 DIS--------------------------------VRETQALILSPTRELAVQIQKVILALGDYMN---V---QCH-ACI 130 (400)
T ss_pred ccc--------------------------------cceeeEEEecChHHHHHHHHHHHHHhccccc---c---eEE-EEe
Confidence 311 1126899999999999999999999987653 1 112 223
Q ss_pred CCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHH
Q 004428 387 GTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKM 466 (754)
Q Consensus 387 g~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI 466 (754)
||. + +|-.+. .+ . |+.+++.+||||+.++|
T Consensus 131 gg~--------------------------------------n-----~gedik--kl---d--~G~hvVsGtPGrv~dmi 160 (400)
T KOG0328|consen 131 GGK--------------------------------------N-----LGEDIK--KL---D--YGQHVVSGTPGRVLDMI 160 (400)
T ss_pred cCC--------------------------------------c-----cchhhh--hh---c--ccceEeeCCCchHHHHH
Confidence 332 1 122222 12 2 89999999999999999
Q ss_pred hhhhcccccCcccCCceeEEEEecchhhhhcC-chHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCC
Q 004428 467 TKAEENKEQDVDYLSSIEVLIIDHADIILMQN-WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYH 545 (754)
Q Consensus 467 ~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQN-w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt 545 (754)
. +....-..|.+|||||||.||... -+.+.+|+.. +|.. -|.++||||
T Consensus 161 k-------r~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~---lp~~---------------------~Qvv~~SAT 209 (400)
T KOG0328|consen 161 K-------RRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRY---LPPG---------------------AQVVLVSAT 209 (400)
T ss_pred H-------hccccccceeEEEeccHHHHHHhhHHHHHHHHHHh---CCCC---------------------ceEEEEecc
Confidence 7 345557799999999999999543 3455555554 5754 699999999
Q ss_pred CCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEE
Q 004428 546 PNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLF 624 (754)
Q Consensus 546 ~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIF 624 (754)
+|.+|....++|+.++ .+|-++.. + .....|+|.|.-++... -+|. .|-.|-+ ....+.+||
T Consensus 210 lp~eilemt~kfmtdp-vrilvkrd--e---ltlEgIKqf~v~ve~Ee------wKfd-----tLcdLYd~LtItQavIF 272 (400)
T KOG0328|consen 210 LPHEILEMTEKFMTDP-VRILVKRD--E---LTLEGIKQFFVAVEKEE------WKFD-----TLCDLYDTLTITQAVIF 272 (400)
T ss_pred CcHHHHHHHHHhcCCc-eeEEEecC--C---Cchhhhhhheeeechhh------hhHh-----HHHHHhhhhehheEEEE
Confidence 9999999999999995 45555433 2 24567999999887532 2554 2222222 346899999
Q ss_pred ecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCch
Q 004428 625 LSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFY 704 (754)
Q Consensus 625 v~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY 704 (754)
|+++.-.+-|+..|+..++.+.++||++.|++|..++..|++|+.+|||+||+++ ||+||+.|++|||||||.+.+.|
T Consensus 273 cnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwa--RGiDv~qVslviNYDLP~nre~Y 350 (400)
T KOG0328|consen 273 CNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWA--RGIDVQQVSLVINYDLPNNRELY 350 (400)
T ss_pred ecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhh--ccCCcceeEEEEecCCCccHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred hhhccccCCCC-CceEEEEechhcHHHH---HHHhCc
Q 004428 705 PEIVNMLEGSH-NMTCTVLFSRFDMLRL---ERIVGS 737 (754)
Q Consensus 705 ~erigrt~ra~-~g~~~~L~sk~D~~~L---ErIVGt 737 (754)
+|||||.||-| .|.|+.++...|...| |+..++
T Consensus 351 IHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst 387 (400)
T KOG0328|consen 351 IHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYST 387 (400)
T ss_pred hhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhh
Confidence 99999999988 7999999998887665 555554
No 23
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-50 Score=434.55 Aligned_cols=368 Identities=17% Similarity=0.236 Sum_probs=282.6
Q ss_pred cCCCC--CCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 232 YSDYG--LKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 232 f~~l~--L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
|++++ |.+.|++++... ||.. .||+|..+||.+++++||.+-+.|| +|||.||++|+|.-|++.
T Consensus 6 ~~~l~~~L~~~l~~~l~~~----GF~~-mTpVQa~tIPlll~~KDVvveavTG---------SGKTlAFllP~le~i~rr 71 (567)
T KOG0345|consen 6 FSSLAPPLSPWLLEALDES----GFEK-MTPVQAATIPLLLKNKDVVVEAVTG---------SGKTLAFLLPMLEIIYRR 71 (567)
T ss_pred hhhcCCCccHHHHHHHHhc----CCcc-cCHHHHhhhHHHhcCCceEEEcCCC---------CCchhhHHHHHHHHHHhh
Confidence 44443 558999998874 8875 7999999999999999999999998 899999999999999754
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
-. ++ +++ ..-+|||.||||||.||.+.+..+..+...+++
T Consensus 72 ~~-------~~-------------------~~~-~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~------------- 111 (567)
T KOG0345|consen 72 EA-------KT-------------------PPG-QVGALIISPTRELARQIREVAQPFLEHLPNLNC------------- 111 (567)
T ss_pred cc-------CC-------------------Ccc-ceeEEEecCcHHHHHHHHHHHHHHHHhhhccce-------------
Confidence 11 00 111 234899999999999999999988544211111
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
..+.|| ..+. .-++-|.. .++.|+|||||||.++++.
T Consensus 112 -------------------------------~l~vGG---------~~v~-~Di~~fke-e~~nIlVgTPGRL~di~~~- 148 (567)
T KOG0345|consen 112 -------------------------------ELLVGG---------RSVE-EDIKTFKE-EGPNILVGTPGRLLDILQR- 148 (567)
T ss_pred -------------------------------EEEecC---------ccHH-HHHHHHHH-hCCcEEEeCchhHHHHHhc-
Confidence 222333 2222 22333333 6899999999999999983
Q ss_pred hcccccCcccCC--ceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCC
Q 004428 470 EENKEQDVDYLS--SIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHP 546 (754)
Q Consensus 470 e~~k~rd~dfLS--SIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~ 546 (754)
....|| ++++|||||||++| ||+-.++..|+..| |++ |-|=|||||+
T Consensus 149 ------~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~L---PKQ---------------------RRTGLFSATq 198 (567)
T KOG0345|consen 149 ------EAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFL---PKQ---------------------RRTGLFSATQ 198 (567)
T ss_pred ------hhhhccccccceEEecchHhHhcccHHHHHHHHHHhc---ccc---------------------cccccccchh
Confidence 344566 99999999999999 88888888888764 886 9999999999
Q ss_pred CHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEec
Q 004428 547 NPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLS 626 (754)
Q Consensus 547 ~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~ 626 (754)
+.++..|+...++|+ ..|.+...... .....+.-.|..++ ++.++. .++..|......++|||.|
T Consensus 199 ~~~v~dL~raGLRNp-v~V~V~~k~~~---~tPS~L~~~Y~v~~-------a~eK~~----~lv~~L~~~~~kK~iVFF~ 263 (567)
T KOG0345|consen 199 TQEVEDLARAGLRNP-VRVSVKEKSKS---ATPSSLALEYLVCE-------ADEKLS----QLVHLLNNNKDKKCIVFFP 263 (567)
T ss_pred hHHHHHHHHhhccCc-eeeeecccccc---cCchhhcceeeEec-------HHHHHH----HHHHHHhccccccEEEEec
Confidence 999999999999995 46665443211 12233444455543 356665 3333444556799999999
Q ss_pred chhcHHHHHHHHHh--CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCch
Q 004428 627 SYFEFVRLRNFLKS--QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFY 704 (754)
Q Consensus 627 Sy~d~vrlrn~Lk~--~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY 704 (754)
|+.........|.. ..+++++|||-++|++|++++..|++-...+|++||+|+ ||+||+||..||.||||.+|..+
T Consensus 264 TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaA--RGlDip~iD~VvQ~DpP~~~~~F 341 (567)
T KOG0345|consen 264 TCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAA--RGLDIPGIDLVVQFDPPKDPSSF 341 (567)
T ss_pred CcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhh--ccCCCCCceEEEecCCCCChhHH
Confidence 99888877777764 478999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hhhccccCCCC-CceEEEEechhc-----HHHHHHHhCchHHHHh
Q 004428 705 PEIVNMLEGSH-NMTCTVLFSRFD-----MLRLERIVGSAHAKKM 743 (754)
Q Consensus 705 ~erigrt~ra~-~g~~~~L~sk~D-----~~~LErIVGt~ra~~m 743 (754)
+||||||+|+| .|.|++|..+.+ .+++-++|-.++-..+
T Consensus 342 vHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e 386 (567)
T KOG0345|consen 342 VHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTE 386 (567)
T ss_pred HhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhccc
Confidence 99999999998 699999887543 2344444444443333
No 24
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-51 Score=426.59 Aligned_cols=360 Identities=20% Similarity=0.247 Sum_probs=298.9
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
-..|.+|.|++.|+..+-++ ||.. |+|||.++||+++.|+|||+.|++| ||||+|||+|+|+.|..
T Consensus 84 G~efEd~~Lkr~LLmgIfe~----G~ek-PSPiQeesIPiaLtGrdiLaRaKNG---------TGKT~a~~IP~Lekid~ 149 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEK----GFEK-PSPIQEESIPIALTGRDILARAKNG---------TGKTAAYCIPVLEKIDP 149 (459)
T ss_pred CccHHHhhhhHHHHHHHHHh----ccCC-CCCccccccceeecchhhhhhccCC---------CCCccceechhhhhcCc
Confidence 35699999999999999886 8864 9999999999999999999999887 99999999999999854
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
..+ ..+++|||||||||+|+....+.++.+.+ + +.+-.-||
T Consensus 150 ~~~--------------------------------~IQ~~ilVPtrelALQtSqvc~~lskh~~-i------~vmvttGG 190 (459)
T KOG0326|consen 150 KKN--------------------------------VIQAIILVPTRELALQTSQVCKELSKHLG-I------KVMVTTGG 190 (459)
T ss_pred ccc--------------------------------ceeEEEEeecchhhHHHHHHHHHHhcccC-e------EEEEecCC
Confidence 321 24679999999999999999999998764 2 22333344
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
. .+.-.-++||. ..+++||||||+.++++
T Consensus 191 T-----------------------------------------------~lrDDI~Rl~~---~VH~~vgTPGRIlDL~~- 219 (459)
T KOG0326|consen 191 T-----------------------------------------------SLRDDIMRLNQ---TVHLVVGTPGRILDLAK- 219 (459)
T ss_pred c-----------------------------------------------ccccceeeecC---ceEEEEcCChhHHHHHh-
Confidence 3 22223455664 58999999999999987
Q ss_pred hhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
++..-||.+.+||+||||.||.+-| ...|-+.|..+|++ ||.||||||+|-
T Consensus 220 ------KgVa~ls~c~~lV~DEADKlLs~~F--~~~~e~li~~lP~~---------------------rQillySATFP~ 270 (459)
T KOG0326|consen 220 ------KGVADLSDCVILVMDEADKLLSVDF--QPIVEKLISFLPKE---------------------RQILLYSATFPL 270 (459)
T ss_pred ------cccccchhceEEEechhhhhhchhh--hhHHHHHHHhCCcc---------------------ceeeEEecccch
Confidence 3566799999999999999997644 33444555667986 999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecch
Q 004428 549 EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSY 628 (754)
Q Consensus 549 einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy 628 (754)
.+..+..+|++|+- .|.+-.+- ....|.|.|-.|....+. +-+++++.+| ...+.+|||+|.
T Consensus 271 tVk~Fm~~~l~kPy-~INLM~eL------tl~GvtQyYafV~e~qKv--------hCLntLfskL---qINQsIIFCNS~ 332 (459)
T KOG0326|consen 271 TVKGFMDRHLKKPY-EINLMEEL------TLKGVTQYYAFVEERQKV--------HCLNTLFSKL---QINQSIIFCNST 332 (459)
T ss_pred hHHHHHHHhccCcc-eeehhhhh------hhcchhhheeeechhhhh--------hhHHHHHHHh---cccceEEEeccc
Confidence 99999999999963 44443221 245799999998754332 3445565555 358899999999
Q ss_pred hcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhc
Q 004428 629 FEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIV 708 (754)
Q Consensus 629 ~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~eri 708 (754)
..+.-|+......|+++..||.-|.|..|.|.-+.|++|.++.|||||.+- ||+||..|..|||||.|.++|.|.|||
T Consensus 333 ~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~T--RGIDiqavNvVINFDfpk~aEtYLHRI 410 (459)
T KOG0326|consen 333 NRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFT--RGIDIQAVNVVINFDFPKNAETYLHRI 410 (459)
T ss_pred hHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhh--cccccceeeEEEecCCCCCHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999977 999999999999999999999999999
Q ss_pred cccCCCC-CceEEEEechhc---HHHHHHHhCchHHH
Q 004428 709 NMLEGSH-NMTCTVLFSRFD---MLRLERIVGSAHAK 741 (754)
Q Consensus 709 grt~ra~-~g~~~~L~sk~D---~~~LErIVGt~ra~ 741 (754)
||.||-| -|.|+.|+|..| ++++|.-+|++...
T Consensus 411 GRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~p 447 (459)
T KOG0326|consen 411 GRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKP 447 (459)
T ss_pred cCCccCCCcceEEEEEehhhhhhHHHHHHHhcccccc
Confidence 9999988 599999999666 56678889997643
No 25
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.6e-48 Score=429.41 Aligned_cols=356 Identities=18% Similarity=0.280 Sum_probs=280.3
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
++|++++|.+.|+++|.++ ||.. |||+|+++||.+++++|++++++|| +|||.+|+||+|+|++..
T Consensus 1 ~~f~~l~l~~~l~~~l~~~----g~~~-p~~iQ~~ai~~~~~g~d~l~~apTG---------sGKT~~~~lp~l~~l~~~ 66 (434)
T PRK11192 1 TTFSELELDESLLEALQDK----GYTR-PTAIQAEAIPPALDGRDVLGSAPTG---------TGKTAAFLLPALQHLLDF 66 (434)
T ss_pred CCHhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------ChHHHHHHHHHHHHHhhc
Confidence 3699999999999999885 8876 8999999999999999999999998 899999999999999753
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
+. ..+ ..++||||+|||+||.|+.+.+..++.... .+...
T Consensus 67 ~~---------------------------~~~-~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~-------~~v~~----- 106 (434)
T PRK11192 67 PR---------------------------RKS-GPPRILILTPTRELAMQVADQARELAKHTH-------LDIAT----- 106 (434)
T ss_pred cc---------------------------cCC-CCceEEEECCcHHHHHHHHHHHHHHHccCC-------cEEEE-----
Confidence 11 011 257999999999999999999999875432 11222
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
+.|| +.+.... ..+. .++|||||||++|.+++..
T Consensus 107 ---------------------------------~~gg---------~~~~~~~-~~l~--~~~~IlV~Tp~rl~~~~~~- 140 (434)
T PRK11192 107 ---------------------------------ITGG---------VAYMNHA-EVFS--ENQDIVVATPGRLLQYIKE- 140 (434)
T ss_pred ---------------------------------EECC---------CCHHHHH-HHhc--CCCCEEEEChHHHHHHHHc-
Confidence 2222 2222222 2232 4689999999999999862
Q ss_pred hcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
..+ .+.+|++|||||||+|+ |++...+..|...+ |. .+|+++||||++.
T Consensus 141 -----~~~-~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~---~~---------------------~~q~~~~SAT~~~ 190 (434)
T PRK11192 141 -----ENF-DCRAVETLILDEADRMLDMGFAQDIETIAAET---RW---------------------RKQTLLFSATLEG 190 (434)
T ss_pred -----CCc-CcccCCEEEEECHHHHhCCCcHHHHHHHHHhC---cc---------------------ccEEEEEEeecCH
Confidence 223 48999999999999999 55555565554432 32 3899999999985
Q ss_pred -HHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEec
Q 004428 549 -EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLS 626 (754)
Q Consensus 549 -einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~ 626 (754)
.+..+...++.++ ..+.+.+. ......|.|.+..++.. +.+. .+|-.+.. ....++||||+
T Consensus 191 ~~~~~~~~~~~~~~-~~i~~~~~-----~~~~~~i~~~~~~~~~~------~~k~-----~~l~~l~~~~~~~~~lVF~~ 253 (434)
T PRK11192 191 DAVQDFAERLLNDP-VEVEAEPS-----RRERKKIHQWYYRADDL------EHKT-----ALLCHLLKQPEVTRSIVFVR 253 (434)
T ss_pred HHHHHHHHHHccCC-EEEEecCC-----cccccCceEEEEEeCCH------HHHH-----HHHHHHHhcCCCCeEEEEeC
Confidence 4777777666653 34444322 12345688888776421 2233 23434433 35689999999
Q ss_pred chhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhh
Q 004428 627 SYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPE 706 (754)
Q Consensus 627 Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~e 706 (754)
+...+.+|...|+..++.+..+|+.+++.+|..++..|++|+++|||+||+++ ||+||++|++||||++|.+++.|.|
T Consensus 254 s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~--~GiDip~v~~VI~~d~p~s~~~yiq 331 (434)
T PRK11192 254 TRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAA--RGIDIDDVSHVINFDMPRSADTYLH 331 (434)
T ss_pred ChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccc--cCccCCCCCEEEEECCCCCHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 707 IVNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 707 rigrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
|+||+||++ .|.|++|++..|...|.+|
T Consensus 332 r~GR~gR~g~~g~ai~l~~~~d~~~~~~i 360 (434)
T PRK11192 332 RIGRTGRAGRKGTAISLVEAHDHLLLGKI 360 (434)
T ss_pred cccccccCCCCceEEEEecHHHHHHHHHH
Confidence 999999987 6999999999987666443
No 26
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-49 Score=433.54 Aligned_cols=360 Identities=19% Similarity=0.239 Sum_probs=295.9
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
+..|++|.|+.+.++.|.+. +|.. +|.||+.+||..+.|+|||+.|+|| +|||.||++|+|.||+.
T Consensus 68 ~~kF~dlpls~~t~kgLke~----~fv~-~teiQ~~~Ip~aL~G~DvlGAAkTG---------SGKTLAFlvPvlE~L~r 133 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEA----KFVK-MTEIQRDTIPMALQGHDVLGAAKTG---------SGKTLAFLVPVLEALYR 133 (758)
T ss_pred hhhHHhCCCchHHHHhHhhc----CCcc-HHHHHHhhcchhccCcccccccccC---------CCceeeehHHHHHHHHH
Confidence 45799999999999999884 7876 8999999999999999999999998 89999999999999986
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
.+= -..-| -=+|||.||||||+|+.+.|.+++.+.. |..
T Consensus 134 ~kW-------------------------s~~DG---lGalIISPTRELA~QtFevL~kvgk~h~-------------fSa 172 (758)
T KOG0343|consen 134 LKW-------------------------SPTDG---LGALIISPTRELALQTFEVLNKVGKHHD-------------FSA 172 (758)
T ss_pred cCC-------------------------CCCCC---ceeEEecchHHHHHHHHHHHHHHhhccc-------------ccc
Confidence 521 11123 3489999999999999999999976542 211
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
-.+.||++ +++.+-.+ .+..|+|||||||..+|.+
T Consensus 173 --------------------------------GLiiGG~~-------~k~E~eRi------~~mNILVCTPGRLLQHmde 207 (758)
T KOG0343|consen 173 --------------------------------GLIIGGKD-------VKFELERI------SQMNILVCTPGRLLQHMDE 207 (758)
T ss_pred --------------------------------ceeecCch-------hHHHHHhh------hcCCeEEechHHHHHHhhh
Confidence 12455543 45555444 4789999999999999974
Q ss_pred hhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
+ -.-..++++||||||||+|| |+|-..+..|++.| |++ |||||||||.+
T Consensus 208 ~------~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~l---P~~---------------------RQTLLFSATqt 257 (758)
T KOG0343|consen 208 N------PNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENL---PKK---------------------RQTLLFSATQT 257 (758)
T ss_pred c------CCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhC---Chh---------------------heeeeeecccc
Confidence 2 23347899999999999999 88878888887764 765 99999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
..+..|++-.+.|| ..|.+.... ...+..+++|.|+.++... ++. .++..|......++|||++|
T Consensus 258 ~svkdLaRLsL~dP-~~vsvhe~a---~~atP~~L~Q~y~~v~l~~-------Ki~----~L~sFI~shlk~K~iVF~Ss 322 (758)
T KOG0343|consen 258 KSVKDLARLSLKDP-VYVSVHENA---VAATPSNLQQSYVIVPLED-------KID----MLWSFIKSHLKKKSIVFLSS 322 (758)
T ss_pred hhHHHHHHhhcCCC-cEEEEeccc---cccChhhhhheEEEEehhh-------HHH----HHHHHHHhccccceEEEEeh
Confidence 99999997666775 466665221 1235668999999988543 332 34444555567899999999
Q ss_pred hhcHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchh
Q 004428 628 YFEFVRLRNFLKSQ--NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYP 705 (754)
Q Consensus 628 y~d~vrlrn~Lk~~--~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~ 705 (754)
+..+.-|...|.+. |++..++||-++|..|......|-..+.-||.|||+++ ||+|++.|..||-||-|.+.+.|+
T Consensus 323 cKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~a--RGLDFpaVdwViQ~DCPedv~tYI 400 (758)
T KOG0343|consen 323 CKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAA--RGLDFPAVDWVIQVDCPEDVDTYI 400 (758)
T ss_pred hhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhh--ccCCCcccceEEEecCchhHHHHH
Confidence 99999999999864 99999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hhccccCCCC-CceEEEEechhc-HHHHHHHh
Q 004428 706 EIVNMLEGSH-NMTCTVLFSRFD-MLRLERIV 735 (754)
Q Consensus 706 erigrt~ra~-~g~~~~L~sk~D-~~~LErIV 735 (754)
||+|||+|.. .|.|..+.++.+ ...|.++-
T Consensus 401 HRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq 432 (758)
T KOG0343|consen 401 HRVGRTARYKERGESLLMLTPSEEEAMLKKLQ 432 (758)
T ss_pred HHhhhhhcccCCCceEEEEcchhHHHHHHHHH
Confidence 9999999987 689999999887 44444443
No 27
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-48 Score=425.04 Aligned_cols=380 Identities=17% Similarity=0.202 Sum_probs=291.9
Q ss_pred CCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHh
Q 004428 228 DDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIF 307 (754)
Q Consensus 228 ~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ 307 (754)
....|+.+||++.|.++|.+.+ ++.. ||.+|+++||.+++|+|+++.++|| +|||.|||||+++||.
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m---~i~~-pTsVQkq~IP~lL~grD~lV~aQTG---------SGKTLAYllPiVq~Lq 200 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKM---KISA-PTSVQKQAIPVLLEGRDALVRAQTG---------SGKTLAYLLPIVQSLQ 200 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHh---ccCc-cchHhhcchhhhhcCcceEEEcCCC---------CcccHHHHHHHHHHHH
Confidence 3567999999999999999874 6665 8999999999999999999999999 8999999999999998
Q ss_pred hcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccC
Q 004428 308 RTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFG 387 (754)
Q Consensus 308 ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg 387 (754)
+--.+| + |. ..|-+||||||||||+||.+++.+|...-.++ |. ....|
T Consensus 201 ~m~~ki-------~----------------Rs---~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWI-VP-----g~lmG 248 (708)
T KOG0348|consen 201 AMEPKI-------Q----------------RS---DGPYALVIVPTRELALQIYETVQKLLKPFHWI-VP-----GVLMG 248 (708)
T ss_pred hcCccc-------c----------------cc---CCceEEEEechHHHHHHHHHHHHHHhcCceEE-ee-----ceeec
Confidence 653221 1 22 34889999999999999999999996433221 10 11223
Q ss_pred CCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHh
Q 004428 388 TKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMT 467 (754)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~ 467 (754)
|+.- +-.+..|+ .+..|+|+|||||.|+|.
T Consensus 249 GEkk---------------------------------------------KSEKARLR-----KGiNILIgTPGRLvDHLk 278 (708)
T KOG0348|consen 249 GEKK---------------------------------------------KSEKARLR-----KGINILIGTPGRLVDHLK 278 (708)
T ss_pred cccc---------------------------------------------ccHHHHHh-----cCceEEEcCchHHHHHHh
Confidence 3310 01122233 589999999999999998
Q ss_pred hhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCC
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHP 546 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~ 546 (754)
++. ...+|.+..||+||||+|| |++-..+..|++.+..+|... |-+- .-.+-+|+||+|||+
T Consensus 279 nT~------~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e--~~~~---------~lp~q~q~mLlSATL 341 (708)
T KOG0348|consen 279 NTK------SIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAE--CKDP---------KLPHQLQNMLLSATL 341 (708)
T ss_pred ccc------hheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchh--cccc---------cccHHHHhHhhhhhh
Confidence 642 3458899999999999999 777779999999997765421 1111 111249999999999
Q ss_pred CHHHHHHHHHhhcCCCceEEEeeccc--------------C----cc--cccccceeEEEEEeccCcccchhHHHHHHHH
Q 004428 547 NPEINAFFNHHCANYQGKVKLACEYK--------------G----VL--PKVLLNVRQIYERFNADSIAKADDARLEYFT 606 (754)
Q Consensus 547 ~peinsL~~~~~~N~~G~Vkv~~~~~--------------g----~i--~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~ 606 (754)
+..++.|+.-.++++ ..|.+..... | .+ ..+..++.|.|..|++. .|+--+.
T Consensus 342 td~V~rLa~~sLkDp-v~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK-------LRLV~La 413 (708)
T KOG0348|consen 342 TDGVNRLADLSLKDP-VYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK-------LRLVALA 413 (708)
T ss_pred HHHHHHHhhccccCc-eeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCc-------hhHHHHH
Confidence 999999999888885 3444211000 1 01 12345788999998863 4665444
Q ss_pred HHHhHHhhhcCCCcEEEEecch----hcHHHHHHHHHh------------------CCCceEeecCCCCHHHHHHHHHHH
Q 004428 607 KKVFPKIKDSIQGGIMLFLSSY----FEFVRLRNFLKS------------------QNASFCLLGDYTEPSDISRARVWF 664 (754)
Q Consensus 607 ~~iLp~l~~~~~~~tLIFv~Sy----~d~vrlrn~Lk~------------------~~~~f~~Ihey~sq~~r~rar~~F 664 (754)
..|+..+......+++||+++. |.|.-+...|.. .+..|.-+||.|+|.+|+.+.+.|
T Consensus 414 a~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~F 493 (708)
T KOG0348|consen 414 ALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEF 493 (708)
T ss_pred HHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhh
Confidence 3333334444556899999987 666666666654 246789999999999999999999
Q ss_pred hcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHH
Q 004428 665 FEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDML 729 (754)
Q Consensus 665 ~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~ 729 (754)
.+-+.-||||||||+ ||+|++.|..||-|++|..+..|+||||||+|+| +|.++-+..+.++.
T Consensus 494 s~~~~~VLLcTDVAa--RGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eae 557 (708)
T KOG0348|consen 494 SHSRRAVLLCTDVAA--RGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAE 557 (708)
T ss_pred ccccceEEEehhhhh--ccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHH
Confidence 999999999999999 9999999999999999999999999999999998 78888877877765
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.1e-46 Score=417.21 Aligned_cols=371 Identities=18% Similarity=0.232 Sum_probs=288.1
Q ss_pred CCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHh
Q 004428 228 DDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIF 307 (754)
Q Consensus 228 ~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ 307 (754)
....|.+++|++.|.++|.+. |+.. |||+|+++||.+++|+||+++++|| +|||.+|+||+|++++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~----g~~~-~~~iQ~~ai~~~~~G~dvi~~apTG---------SGKTlay~lpil~~l~ 150 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDL----GFPY-CTPIQAQVLGYTLAGHDAIGRAQTG---------TGKTAAFLISIINQLL 150 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------ChHHHHHHHHHHHHHH
Confidence 356799999999999999884 8876 8999999999999999999999998 9999999999999998
Q ss_pred hcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccC
Q 004428 308 RTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFG 387 (754)
Q Consensus 308 ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg 387 (754)
+.+.. ..+-. ..|++|||+|||+||.|+.+.+..|..... + +....+|
T Consensus 151 ~~~~~-----------------------~~~~~--~~~~aLil~PtreLa~Q~~~~~~~l~~~~~-~------~v~~~~g 198 (475)
T PRK01297 151 QTPPP-----------------------KERYM--GEPRALIIAPTRELVVQIAKDAAALTKYTG-L------NVMTFVG 198 (475)
T ss_pred hcCcc-----------------------ccccc--CCceEEEEeCcHHHHHHHHHHHHHhhccCC-C------EEEEEEc
Confidence 65320 00111 258999999999999999999999865431 1 1112222
Q ss_pred CCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHh
Q 004428 388 TKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMT 467 (754)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~ 467 (754)
+. .+....-.+.. ..+||||+||++|.+++.
T Consensus 199 g~-----------------------------------------------~~~~~~~~~~~--~~~~Iiv~TP~~Ll~~~~ 229 (475)
T PRK01297 199 GM-----------------------------------------------DFDKQLKQLEA--RFCDILVATPGRLLDFNQ 229 (475)
T ss_pred cC-----------------------------------------------ChHHHHHHHhC--CCCCEEEECHHHHHHHHH
Confidence 21 11111111111 468999999999998876
Q ss_pred hhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCC
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHP 546 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~ 546 (754)
+...+|+.+.+|||||||.|+ +.+...+..|+..+ |.. ..||+++||||+
T Consensus 230 -------~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~---~~~-------------------~~~q~i~~SAT~ 280 (475)
T PRK01297 230 -------RGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQT---PRK-------------------EERQTLLFSATF 280 (475)
T ss_pred -------cCCcccccCceEEechHHHHHhcccHHHHHHHHHhC---CCC-------------------CCceEEEEEeec
Confidence 345689999999999999998 44445555555543 421 137999999999
Q ss_pred CHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHh-hhcCCCcEEEEe
Q 004428 547 NPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKI-KDSIQGGIMLFL 625 (754)
Q Consensus 547 ~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l-~~~~~~~tLIFv 625 (754)
+..+..++..++.++ ..+.+.... .....+.|.+..+... .+.. +|..+ ......++||||
T Consensus 281 ~~~~~~~~~~~~~~~-~~v~~~~~~-----~~~~~~~~~~~~~~~~-------~k~~-----~l~~ll~~~~~~~~IVF~ 342 (475)
T PRK01297 281 TDDVMNLAKQWTTDP-AIVEIEPEN-----VASDTVEQHVYAVAGS-------DKYK-----LLYNLVTQNPWERVMVFA 342 (475)
T ss_pred CHHHHHHHHHhccCC-EEEEeccCc-----CCCCcccEEEEEecch-------hHHH-----HHHHHHHhcCCCeEEEEe
Confidence 999999999888875 344443221 1234577777765432 1222 22222 233457999999
Q ss_pred cchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchh
Q 004428 626 SSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYP 705 (754)
Q Consensus 626 ~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~ 705 (754)
++...+..|...|...++++..+|+++++.+|.+.+..|++|+++|||+|+++. ||+||++|++||+|++|.++..|.
T Consensus 343 ~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~--~GIDi~~v~~VI~~~~P~s~~~y~ 420 (475)
T PRK01297 343 NRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAG--RGIHIDGISHVINFTLPEDPDDYV 420 (475)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccc--cCCcccCCCEEEEeCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hhccccCCCC-CceEEEEechhcHH---HHHHHhCchHHHH
Q 004428 706 EIVNMLEGSH-NMTCTVLFSRFDML---RLERIVGSAHAKK 742 (754)
Q Consensus 706 erigrt~ra~-~g~~~~L~sk~D~~---~LErIVGt~ra~~ 742 (754)
||+||+||.+ .|.|++|++..|.. .+|+++|.+..+.
T Consensus 421 Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~ 461 (475)
T PRK01297 421 HRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCE 461 (475)
T ss_pred HhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCccc
Confidence 9999999988 69999999988865 4577788765433
No 29
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-47 Score=440.57 Aligned_cols=399 Identities=16% Similarity=0.211 Sum_probs=313.3
Q ss_pred CCCchhhhcCCCCCHHHHHHHhcccceeeeeecccCCCcceecCCCcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCC
Q 004428 177 HASSFHEHFGYNLSKEEVDDLSKKKLKYEWEVPAVDMSNCKWVGTGECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGND 256 (754)
Q Consensus 177 ~~d~F~~Hf~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~ 256 (754)
+.-||-. +.-+...+|..+++.....-. .+.-.+ ..-+...|+++.+....|+...++..++++ ||..
T Consensus 320 ~~epFRk--nfy~e~~di~~ms~~eV~~yr----~~l~~i--~v~g~~~pkpv~sW~q~gl~~~il~tlkkl----~y~k 387 (997)
T KOG0334|consen 320 SYEPFRK--NFYIEVRDIKRMSAAEVDEYR----CELDGI--KVKGKECPKPVTSWTQCGLSSKILETLKKL----GYEK 387 (997)
T ss_pred cchhhhh--cccccchhHHHHHHHHHHHhh----cCccce--eeccCCCCcccchHhhCCchHHHHHHHHHh----cCCC
Confidence 4577877 444666777777554322100 011001 122456788899999999999999999775 8875
Q ss_pred CCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccc
Q 004428 257 FHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDA 336 (754)
Q Consensus 257 ~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~ 336 (754)
|||||.++||.|++|+|||+.|.|| +|||.+|+||++-|++-.|.. +
T Consensus 388 -~~~IQ~qAiP~ImsGrdvIgvakTg---------SGKT~af~LPmirhi~dQr~~---------------~-------- 434 (997)
T KOG0334|consen 388 -PTPIQAQAIPAIMSGRDVIGVAKTG---------SGKTLAFLLPMIRHIKDQRPL---------------E-------- 434 (997)
T ss_pred -CcchhhhhcchhccCcceEEeeccC---------CccchhhhcchhhhhhcCCCh---------------h--------
Confidence 9999999999999999999999998 899999999999999877651 1
Q ss_pred cccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCC
Q 004428 337 FLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSK 416 (754)
Q Consensus 337 ~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~K 416 (754)
-| ..|-+|||+||||||.||...+.+|+.... -|+.+.||+..
T Consensus 435 ---~g-dGPi~li~aPtrela~QI~r~~~kf~k~l~-------ir~v~vygg~~-------------------------- 477 (997)
T KOG0334|consen 435 ---EG-DGPIALILAPTRELAMQIHREVRKFLKLLG-------IRVVCVYGGSG-------------------------- 477 (997)
T ss_pred ---hC-CCceEEEEcCCHHHHHHHHHHHHHHHhhcC-------ceEEEecCCcc--------------------------
Confidence 12 259999999999999999999999986643 38888898762
Q ss_pred CCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhh
Q 004428 417 PSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILM 496 (754)
Q Consensus 417 P~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm 496 (754)
++-+..-+| .+++|+||||||.++++-..- ...-.|-.+-+||+||||+|+|
T Consensus 478 -------------------~~~qiaelk-----Rg~eIvV~tpGRmiD~l~~n~----grvtnlrR~t~lv~deaDrmfd 529 (997)
T KOG0334|consen 478 -------------------ISQQIAELK-----RGAEIVVCTPGRMIDILCANS----GRVTNLRRVTYLVLDEADRMFD 529 (997)
T ss_pred -------------------HHHHHHHHh-----cCCceEEeccchhhhhHhhcC----Cccccccccceeeechhhhhhe
Confidence 332333344 689999999999999885211 1233455555999999999995
Q ss_pred cCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcc
Q 004428 497 QNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVL 575 (754)
Q Consensus 497 QNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i 575 (754)
..+ ..+..|++++ |+| |||++||||++-.|.+|+++.++ .++.|.+ .+.+
T Consensus 530 mgfePq~~~Ii~nl---------------rpd---------rQtvlfSatfpr~m~~la~~vl~-~Pveiiv--~~~s-- 580 (997)
T KOG0334|consen 530 MGFEPQITRILQNL---------------RPD---------RQTVLFSATFPRSMEALARKVLK-KPVEIIV--GGRS-- 580 (997)
T ss_pred eccCcccchHHhhc---------------chh---------hhhhhhhhhhhHHHHHHHHHhhc-CCeeEEE--ccce--
Confidence 444 4444455543 444 99999999999999999999888 6656444 2333
Q ss_pred cccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCH
Q 004428 576 PKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEP 654 (754)
Q Consensus 576 ~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq 654 (754)
.|...|.|.|..+.. .+.||.. ++..|.. ....+|||||.+...++-|...|.+.++.+.+|||..+|
T Consensus 581 -vV~k~V~q~v~V~~~------e~eKf~k----L~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q 649 (997)
T KOG0334|consen 581 -VVCKEVTQVVRVCAI------ENEKFLK----LLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQ 649 (997)
T ss_pred -eEeccceEEEEEecC------chHHHHH----HHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCch
Confidence 355678998887652 2456653 3333321 347899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhc
Q 004428 655 SDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFD 727 (754)
Q Consensus 655 ~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D 727 (754)
.+|+.....|++|.+.+||+|++++ ||+|++.+..||||+.|.+-+.|+||+|||||++ .|.|++|.++.|
T Consensus 650 ~dR~sti~dfK~~~~~LLvaTsvva--rGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q 721 (997)
T KOG0334|consen 650 HDRSSTIEDFKNGVVNLLVATSVVA--RGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQ 721 (997)
T ss_pred HHHHhHHHHHhccCceEEEehhhhh--cccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHH
Confidence 9999999999999999999999999 9999999999999999999999999999999998 789999998844
No 30
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-46 Score=402.68 Aligned_cols=370 Identities=20% Similarity=0.282 Sum_probs=293.5
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
.+|+++||.++|++++.++ |+.. ||-||..+||+++.|+||++.|+|| +|||+||+||+|+.|+..
T Consensus 19 ktFe~~gLD~RllkAi~~l----G~ek-pTlIQs~aIplaLEgKDvvarArTG---------SGKT~AYliPllqkll~~ 84 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKL----GWEK-PTLIQSSAIPLALEGKDVVARARTG---------SGKTAAYLIPLLQKLLAE 84 (569)
T ss_pred ccHHHhCCCHHHHHHHHHh----CcCC-cchhhhcccchhhcCcceeeeeccC---------CCchHHHHHHHHHHHHHh
Confidence 6899999999999999986 8875 9999999999999999999999999 899999999999999976
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
... + . -.| .|.++||+||||||.||.+.+.+|...-. ...|+...-...
T Consensus 85 k~t----~---------~----------~e~---~~sa~iLvPTkEL~qQvy~viekL~~~c~-----k~lr~~nl~s~~ 133 (569)
T KOG0346|consen 85 KKT----N---------D----------GEQ---GPSAVILVPTKELAQQVYKVIEKLVEYCS-----KDLRAINLASSM 133 (569)
T ss_pred hhc----c---------c----------ccc---cceeEEEechHHHHHHHHHHHHHHHHHHH-----Hhhhhhhhhccc
Confidence 321 0 0 013 48999999999999999999999853211 122443322211
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
.+ ..++.. +. ..+|||||||++|..++..
T Consensus 134 sd---------------------------------------------sv~~~~---L~--d~pdIvV~TP~~ll~~~~~- 162 (569)
T KOG0346|consen 134 SD---------------------------------------------SVNSVA---LM--DLPDIVVATPAKLLRHLAA- 162 (569)
T ss_pred ch---------------------------------------------HHHHHH---Hc--cCCCeEEeChHHHHHHHhh-
Confidence 11 112212 22 5799999999999999873
Q ss_pred hcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
+-...|.++++||+||||-|| .+.-+.+..|..|| |.. =|++|.|||++.
T Consensus 163 -----~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~L---Pr~---------------------~Q~~LmSATl~d 213 (569)
T KOG0346|consen 163 -----GVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHL---PRI---------------------YQCFLMSATLSD 213 (569)
T ss_pred -----ccchhhhheeeEEechhhhhhhcccHHHHHHHHHhC---Cch---------------------hhheeehhhhhh
Confidence 122578999999999999999 66667888888886 542 599999999999
Q ss_pred HHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecch
Q 004428 549 EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSY 628 (754)
Q Consensus 549 einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy 628 (754)
+|.+|-.-+|+||. .+++... .+. ...++.|.+..+.. ..||.... +|-+| +-..+++||||++-
T Consensus 214 Dv~~LKkL~l~nPv-iLkl~e~---el~-~~dqL~Qy~v~cse-------~DKfllly--allKL-~LI~gKsliFVNtI 278 (569)
T KOG0346|consen 214 DVQALKKLFLHNPV-ILKLTEG---ELP-NPDQLTQYQVKCSE-------EDKFLLLY--ALLKL-RLIRGKSLIFVNTI 278 (569)
T ss_pred HHHHHHHHhccCCe-EEEeccc---cCC-CcccceEEEEEecc-------chhHHHHH--HHHHH-HHhcCceEEEEech
Confidence 99999999999963 4565432 111 34678898877652 23554211 22122 23569999999999
Q ss_pred hcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccc-------------------------------
Q 004428 629 FEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTER------------------------------- 677 (754)
Q Consensus 629 ~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEr------------------------------- 677 (754)
..+-||+-+|..-||..|.+++.+.+..|.-.+++|..|-..|+||||.
T Consensus 279 dr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D 358 (569)
T KOG0346|consen 279 DRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLD 358 (569)
T ss_pred hhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccC
Confidence 9999999999999999999999999999999999999999999999991
Q ss_pred --ccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHH---HHHHHhCchH
Q 004428 678 --SHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDML---RLERIVGSAH 739 (754)
Q Consensus 678 --ahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~---~LErIVGt~r 739 (754)
+.--||+|+..|.+|||||+|.++.-|+||+|||+|+. .|++.+|+++.+.. .||.+.-..+
T Consensus 359 ~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~~ 426 (569)
T KOG0346|consen 359 KESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDEN 426 (569)
T ss_pred chhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhHH
Confidence 11239999999999999999999999999999999987 69999999988765 6666665543
No 31
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-45 Score=392.36 Aligned_cols=350 Identities=19% Similarity=0.206 Sum_probs=286.8
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
...|..+||..+++++|.+. ||+. |||||++.||+++.++||++.++|| +|||+||+||++.++..
T Consensus 20 ~g~fqsmgL~~~v~raI~kk----g~~~-ptpiqRKTipliLe~~dvv~martg---------sgktaaf~ipm~e~Lk~ 85 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKK----GFNT-PTPIQRKTIPLILEGRDVVGMARTG---------SGKTAAFLIPMIEKLKS 85 (529)
T ss_pred CCCccccCCCHHHHHHHHHh----hcCC-CCchhcccccceeeccccceeeecC---------CcchhhHHHHHHHHHhh
Confidence 45699999999999999874 8875 9999999999999999999999998 89999999999999953
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
. .| +..|+|||.||||||.|..+.+..++..+. .|-...||+
T Consensus 86 ~-----------------------------s~--~g~RalilsptreLa~qtlkvvkdlgrgt~-------lr~s~~~gg 127 (529)
T KOG0337|consen 86 H-----------------------------SQ--TGLRALILSPTRELALQTLKVVKDLGRGTK-------LRQSLLVGG 127 (529)
T ss_pred c-----------------------------cc--cccceeeccCcHHHHHHHHHHHHHhccccc-------hhhhhhccc
Confidence 2 12 356899999999999999999999987653 344456665
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
+.. .. +..+.. .++||||||||||..+.-+
T Consensus 128 D~~-----------------------------------------------ee-qf~~l~--~npDii~ATpgr~~h~~ve 157 (529)
T KOG0337|consen 128 DSI-----------------------------------------------EE-QFILLN--ENPDIIIATPGRLLHLGVE 157 (529)
T ss_pred chH-----------------------------------------------HH-HHHHhc--cCCCEEEecCceeeeeehh
Confidence 522 22 222222 4799999999999876531
Q ss_pred hhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
-. .-|+|||++|.||||+|+ |++-+.+..|+.. +|.. |||++||||+|
T Consensus 158 ------m~-l~l~sveyVVfdEadrlfemgfqeql~e~l~r---l~~~---------------------~QTllfSatlp 206 (529)
T KOG0337|consen 158 ------MT-LTLSSVEYVVFDEADRLFEMGFQEQLHEILSR---LPES---------------------RQTLLFSATLP 206 (529)
T ss_pred ------ee-ccccceeeeeehhhhHHHhhhhHHHHHHHHHh---CCCc---------------------ceEEEEeccCc
Confidence 23 459999999999999999 6655677777655 4664 89999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
..+-..++.-+.++ .-|++..+ +++...++..|.++.. +.|..+++. ++-.. -...+|+|||++
T Consensus 207 ~~lv~fakaGl~~p-~lVRldve-----tkise~lk~~f~~~~~-------a~K~aaLl~-il~~~--~~~~~t~vf~~t 270 (529)
T KOG0337|consen 207 RDLVDFAKAGLVPP-VLVRLDVE-----TKISELLKVRFFRVRK-------AEKEAALLS-ILGGR--IKDKQTIVFVAT 270 (529)
T ss_pred hhhHHHHHccCCCC-ceEEeehh-----hhcchhhhhheeeecc-------HHHHHHHHH-HHhcc--ccccceeEEecc
Confidence 99888888777764 46776544 2466778888888764 345443332 22111 125689999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
+..+.-++..|+..|+....|.+.++|..|......|..|+..+||.||+|+ ||+||++..+||||++|..+..|+||
T Consensus 271 k~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaa--RG~diplldnvinyd~p~~~klFvhR 348 (529)
T KOG0337|consen 271 KHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAA--RGLDIPLLDNVINYDFPPDDKLFVHR 348 (529)
T ss_pred cchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhh--ccCCCccccccccccCCCCCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcHH
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDML 729 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~~ 729 (754)
+||++|++ .|++++|+...|..
T Consensus 349 Vgr~aragrtg~aYs~V~~~~~~ 371 (529)
T KOG0337|consen 349 VGRVARAGRTGRAYSLVASTDDP 371 (529)
T ss_pred ecchhhccccceEEEEEecccch
Confidence 99999998 78999999877753
No 32
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.8e-42 Score=378.06 Aligned_cols=354 Identities=15% Similarity=0.184 Sum_probs=274.9
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
..+|.+++|++.+.++|... |+.. |||+|.++||.+++++|++.+++|| +|||.+|+|++++++..
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~----~~~~-~~~~Q~~ai~~i~~~~d~ii~apTG---------sGKT~~~~l~~l~~~~~ 92 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSY----GFEK-PSAIQQRGIKPILDGYDTIGQAQSG---------TGKTATFVIAALQLIDY 92 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------ChHHHHHHHHHHHHhcC
Confidence 57799999999999999774 7775 8999999999999999999999998 89999999999998842
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
. ...+++|||+|||+||.|+.+.+..++.... .+....+|+
T Consensus 93 ~--------------------------------~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~-------~~~~~~~g~ 133 (401)
T PTZ00424 93 D--------------------------------LNACQALILAPTRELAQQIQKVVLALGDYLK-------VRCHACVGG 133 (401)
T ss_pred C--------------------------------CCCceEEEECCCHHHHHHHHHHHHHHhhhcC-------ceEEEEECC
Confidence 2 1246899999999999999999988764321 011112222
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
. ... ..+.... .+++|||+||++|..++..
T Consensus 134 ~-----------------------------------------------~~~-~~~~~~~--~~~~Ivv~Tp~~l~~~l~~ 163 (401)
T PTZ00424 134 T-----------------------------------------------VVR-DDINKLK--AGVHMVVGTPGRVYDMIDK 163 (401)
T ss_pred c-----------------------------------------------CHH-HHHHHHc--CCCCEEEECcHHHHHHHHh
Confidence 1 111 1111111 3579999999999998862
Q ss_pred hhcccccCcccCCceeEEEEecchhhhhcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILMQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
....|+.|.++||||||.++...| ..+..++. .+|. ..|+++||||++
T Consensus 164 -------~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~---~~~~---------------------~~~~i~~SAT~~ 212 (401)
T PTZ00424 164 -------RHLRVDDLKLFILDEADEMLSRGFKGQIYDVFK---KLPP---------------------DVQVALFSATMP 212 (401)
T ss_pred -------CCcccccccEEEEecHHHHHhcchHHHHHHHHh---hCCC---------------------CcEEEEEEecCC
Confidence 345699999999999999986444 34444443 3343 269999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
..+..+...++.++ ..+.+.... .....+.|.+..++.. +.+.. .+...+......++||||++
T Consensus 213 ~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~------~~~~~----~l~~~~~~~~~~~~ivF~~t 276 (401)
T PTZ00424 213 NEILELTTKFMRDP-KRILVKKDE-----LTLEGIRQFYVAVEKE------EWKFD----TLCDLYETLTITQAIIYCNT 276 (401)
T ss_pred HHHHHHHHHHcCCC-EEEEeCCCC-----cccCCceEEEEecChH------HHHHH----HHHHHHHhcCCCeEEEEecC
Confidence 99999998888774 233332211 1234577776655421 11221 22222233345789999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
...+..+.+.|+..++.+..+|+.+++.+|.++.+.|++|+++|||+|+.+. ||+||++|++||+|++|.++..|.||
T Consensus 277 ~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~--~GiDip~v~~VI~~~~p~s~~~y~qr 354 (401)
T PTZ00424 277 RRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLA--RGIDVQQVSLVINYDLPASPENYIHR 354 (401)
T ss_pred cHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEccccc--CCcCcccCCEEEEECCCCCHHHEeec
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
+||+||.+ .|.|++|+++.|...+.++
T Consensus 355 ~GRagR~g~~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 355 IGRSGRFGRKGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred ccccccCCCCceEEEEEcHHHHHHHHHH
Confidence 99999987 7999999999887666544
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.2e-43 Score=372.92 Aligned_cols=353 Identities=17% Similarity=0.233 Sum_probs=292.4
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHH
Q 004428 227 KDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHI 306 (754)
Q Consensus 227 ~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv 306 (754)
+...+|.+++|++.|+..+... ||.. ||.||+.+|++|..|.|+...+++| ||||.||++++|+|+
T Consensus 23 evvdsfddm~L~e~LLrgiy~y----GFek-PSaIQqraI~p~i~G~dv~~qaqsg---------TgKt~af~i~iLq~i 88 (397)
T KOG0327|consen 23 EVVDSFDDMNLKESLLRGIYAY----GFEK-PSAIQQRAILPCIKGHDVIAQAQSG---------TGKTAAFLISILQQI 88 (397)
T ss_pred HHhhhhhhcCCCHHHHhHHHhh----ccCC-chHHHhccccccccCCceeEeeecc---------ccchhhhHHHHHhhc
Confidence 3456899999999999999886 8876 9999999999999999999999998 999999999999999
Q ss_pred hhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccccc
Q 004428 307 FRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEF 386 (754)
Q Consensus 307 ~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ef 386 (754)
.-. + .-++||||+||||||.|+.+....+..... + +.-..-
T Consensus 89 D~~------------------------------~--ke~qalilaPtreLa~qi~~v~~~lg~~~~---~----~v~~~i 129 (397)
T KOG0327|consen 89 DMS------------------------------V--KETQALILAPTRELAQQIQKVVRALGDHMD---V----SVHACI 129 (397)
T ss_pred Ccc------------------------------h--HHHHHHHhcchHHHHHHHHHHHHhhhcccc---e----eeeeec
Confidence 322 0 236799999999999999999888876542 1 111112
Q ss_pred CCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHH
Q 004428 387 GTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKM 466 (754)
Q Consensus 387 g~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI 466 (754)
| |..+-++-.++-. ..+.|+|+||||+.+.|
T Consensus 130 g-----------------------------------------------g~~~~~~~~~i~~--~~~hivvGTpgrV~dml 160 (397)
T KOG0327|consen 130 G-----------------------------------------------GTNVRREDQALLK--DKPHIVVGTPGRVFDML 160 (397)
T ss_pred C-----------------------------------------------cccchhhhhhhhc--cCceeecCCchhHHHhh
Confidence 2 1223322222221 35899999999999999
Q ss_pred hhhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCC
Q 004428 467 TKAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYH 545 (754)
Q Consensus 467 ~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt 545 (754)
. +..++..-|+++|+||||.|| -++-+.+..|+.++ |.+ =|+++||||
T Consensus 161 ~-------~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~l---p~~---------------------vQv~l~SAT 209 (397)
T KOG0327|consen 161 N-------RGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQEL---PSD---------------------VQVVLLSAT 209 (397)
T ss_pred c-------cccccccceeEEeecchHhhhccchHHHHHHHHHHc---Ccc---------------------hhheeeccc
Confidence 7 357788899999999999999 56668888888886 553 399999999
Q ss_pred CCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEe
Q 004428 546 PNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFL 625 (754)
Q Consensus 546 ~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv 625 (754)
+++++..+.+++++++ ..|.++.. + .....|+|.|.++.... ++. .|-.|.+ ...+.+|||
T Consensus 210 ~p~~vl~vt~~f~~~p-v~i~vkk~--~---ltl~gikq~~i~v~k~~-------k~~-----~l~dl~~-~~~q~~if~ 270 (397)
T KOG0327|consen 210 MPSDVLEVTKKFMREP-VRILVKKD--E---LTLEGIKQFYINVEKEE-------KLD-----TLCDLYR-RVTQAVIFC 270 (397)
T ss_pred CcHHHHHHHHHhccCc-eEEEecch--h---hhhhheeeeeeeccccc-------ccc-----HHHHHHH-hhhcceEEe
Confidence 9999999999999996 34544432 2 34678999999987543 332 3334444 678999999
Q ss_pred cchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchh
Q 004428 626 SSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYP 705 (754)
Q Consensus 626 ~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~ 705 (754)
++......|...|...++...+||+.+.|.+|...+..|+.|..+|||.||+++ ||+||..+..||||++|.+.+-|.
T Consensus 271 nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~a--rgidv~~~slvinydlP~~~~~yi 348 (397)
T KOG0327|consen 271 NTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLA--RGIDVQQVSLVVNYDLPARKENYI 348 (397)
T ss_pred cchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccc--cccchhhcceeeeeccccchhhhh
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hhccccCCCC-CceEEEEechhcHHHHHH
Q 004428 706 EIVNMLEGSH-NMTCTVLFSRFDMLRLER 733 (754)
Q Consensus 706 erigrt~ra~-~g~~~~L~sk~D~~~LEr 733 (754)
||+||+||-| +|.++++++..|...|-+
T Consensus 349 hR~gr~gr~grkg~~in~v~~~d~~~lk~ 377 (397)
T KOG0327|consen 349 HRIGRAGRFGRKGVAINFVTEEDVRDLKD 377 (397)
T ss_pred hhcccccccCCCceeeeeehHhhHHHHHh
Confidence 9999999988 799999999888765533
No 34
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.5e-42 Score=372.94 Aligned_cols=386 Identities=15% Similarity=0.187 Sum_probs=267.8
Q ss_pred cCCCCCCHHH------HHHHHHHhhhCCCCCCCCHHHHHHhhhhh---------CCccEEEecCCCCccCCCCCCchhHH
Q 004428 232 YSDYGLKPKL------YKHWLDIYNKSGGNDFHSSKQRSFFSLCN---------SYRDILHSNKKPFYLKGQEEDSNIME 296 (754)
Q Consensus 232 f~~l~L~~~L------~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~---------~y~Dvl~~a~Tg~~~~g~~~~tgkt~ 296 (754)
|+.++++..+ .+.+..+.++.+.... -|+|.+++|.++ ..+||++.|.|| +|||.
T Consensus 129 ~s~l~~se~k~~~d~lea~~~q~l~k~~is~~-FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTG---------SGKTL 198 (620)
T KOG0350|consen 129 FSVLGKSEMKNLEDTLEATIDQLLVKMAISRL-FPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTG---------SGKTL 198 (620)
T ss_pred eeccchhHHHHHHHHHHHHHHHHHHHhhcccc-cchHHHHHHHHHHhhcCCCCCCCCceEEecCCC---------CCcee
Confidence 5555555442 2233333444565553 489999999883 378999999998 89999
Q ss_pred HHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccc
Q 004428 297 TYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNV 376 (754)
Q Consensus 297 ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v 376 (754)
+|+|||++-|.+.. -.|-++|||||||+||.||+++|..++..+. +.|
T Consensus 199 aY~iPIVQ~L~~R~-------------------------------v~~LRavVivPtr~L~~QV~~~f~~~~~~tg-L~V 246 (620)
T KOG0350|consen 199 AYVIPIVQLLSSRP-------------------------------VKRLRAVVIVPTRELALQVYDTFKRLNSGTG-LAV 246 (620)
T ss_pred eehhHHHHHHccCC-------------------------------ccceEEEEEeeHHHHHHHHHHHHHHhccCCc-eEE
Confidence 99999999886431 1357899999999999999999999987664 112
Q ss_pred ccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhccc--CCCCE
Q 004428 377 EHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDF--YTSDM 454 (754)
Q Consensus 377 ~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~F--y~sDI 454 (754)
. .--|.. ++..-+-+|-+.. ...||
T Consensus 247 ~------~~sgq~-----------------------------------------------sl~~E~~qL~~~~~~~~~DI 273 (620)
T KOG0350|consen 247 C------SLSGQN-----------------------------------------------SLEDEARQLASDPPECRIDI 273 (620)
T ss_pred E------eccccc-----------------------------------------------chHHHHHHHhcCCCccccce
Confidence 1 111111 1111122222221 24699
Q ss_pred EEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhh---hcCchHHHHHHHHhccC-----CCCCCCCchhhhhh
Q 004428 455 IVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL---MQNWSWLIEVVEQLNRI-----PSKQHGTDVMRIRQ 526 (754)
Q Consensus 455 IVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL---mQNw~hv~~Il~~Ln~~-----Pk~~h~~DfsRvR~ 526 (754)
||||||||.++|.++ ..++ |+++.+|||||||||| .|+| +.+|+.++... |...-..+++-...
T Consensus 274 lVaTPGRLVDHl~~~-----k~f~-Lk~LrfLVIDEADRll~qsfQ~W--l~~v~~~~~~~k~~~~~~nii~~~~~~~pt 345 (620)
T KOG0350|consen 274 LVATPGRLVDHLNNT-----KSFD-LKHLRFLVIDEADRLLDQSFQEW--LDTVMSLCKTMKRVACLDNIIRQRQAPQPT 345 (620)
T ss_pred EEcCchHHHHhccCC-----CCcc-hhhceEEEechHHHHHHHHHHHH--HHHHHHHhCCchhhcChhhhhhhcccCCch
Confidence 999999999999852 3454 9999999999999998 4777 55666665433 22211112211111
Q ss_pred hh---cccCCCcc--ccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHH
Q 004428 527 WY---LDGYSRFY--RQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDAR 601 (754)
Q Consensus 527 w~---L~~~ak~~--RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~R 601 (754)
.+ +.+..+.| -|-|+||||++..-+.|..--+++++- ..+..+-.|.. .+...+.+...-.+. +
T Consensus 346 ~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl-~~v~~~~~~ry-slp~~l~~~~vv~~~---------~ 414 (620)
T KOG0350|consen 346 VLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRL-FHVSKPLIGRY-SLPSSLSHRLVVTEP---------K 414 (620)
T ss_pred hhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCce-EEeecccceee-ecChhhhhceeeccc---------c
Confidence 11 22222222 368999999998877777655566531 11211111211 233344444443321 1
Q ss_pred HHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHH----hCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 004428 602 LEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLK----SQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTER 677 (754)
Q Consensus 602 f~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk----~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEr 677 (754)
++-..+...|......++|+|++|-....||...|+ +-++++....+..+++.|.+.++.|..|.++||||||.
T Consensus 415 --~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~ 492 (620)
T KOG0350|consen 415 --FKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDA 492 (620)
T ss_pred --cchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhh
Confidence 122234445556678999999999999999999988 44777777899999999999999999999999999999
Q ss_pred ccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHh
Q 004428 678 SHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIV 735 (754)
Q Consensus 678 ahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIV 735 (754)
.+ ||+||.+|.+|||||+|.+...|+||+|||+||| .|.|++|.++.+...+-+++
T Consensus 493 la--RGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL 549 (620)
T KOG0350|consen 493 LA--RGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLL 549 (620)
T ss_pred hh--cCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHH
Confidence 99 9999999999999999999999999999999999 79999999988876554444
No 35
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-41 Score=377.36 Aligned_cols=372 Identities=16% Similarity=0.218 Sum_probs=286.8
Q ss_pred CCCcccCCCCCCcCC----CCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhH
Q 004428 220 GTGECFLKDDNLYSD----YGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIM 295 (754)
Q Consensus 220 ~~~~~~~~~~~~f~~----l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt 295 (754)
..|..+|.++.+|.+ +..+++|+.++..+ +|.. |||+|.+++|.++.|+|||+|+.|| +|+|
T Consensus 122 v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~----~F~~-Pt~iq~~aipvfl~~r~~lAcapTG---------sgKt 187 (593)
T KOG0344|consen 122 VDGFHLPPPLLSFSDLTYDYSMNKRLLENLQEL----GFDE-PTPIQKQAIPVFLEKRDVLACAPTG---------SGKT 187 (593)
T ss_pred ccCCCCCCccccccccchhhhhcHHHHHhHhhC----CCCC-CCcccchhhhhhhcccceEEeccCC---------Ccch
Confidence 346778888888886 77889998888875 7875 9999999999999999999999998 8899
Q ss_pred HHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhC--Ccccc
Q 004428 296 ETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLT--PDAHK 373 (754)
Q Consensus 296 ~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~--~~~~~ 373 (754)
.||++|+|+||..... . .+-+.-+++||.|||+||.|+...+.++. +.+.
T Consensus 188 laf~~Pil~~L~~~~~--~-------------------------~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~- 239 (593)
T KOG0344|consen 188 LAFNLPILQHLKDLSQ--E-------------------------KHKVGLRALILSPTRELAAQIYREMRKYSIDEGTS- 239 (593)
T ss_pred hhhhhHHHHHHHHhhc--c-------------------------cCccceEEEEecchHHHHHHHHHHHHhcCCCCCCc-
Confidence 9999999999976521 1 12234579999999999999999999997 3321
Q ss_pred cccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCC
Q 004428 374 VNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSD 453 (754)
Q Consensus 374 ~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sD 453 (754)
.| ...|. +...|. ++ .+..+. ..+|
T Consensus 240 ------~~-a~~~~-------------------------~~~~~~--------------------qk--~a~~~~-~k~d 264 (593)
T KOG0344|consen 240 ------LR-AAQFS-------------------------KPAYPS--------------------QK--PAFLSD-EKYD 264 (593)
T ss_pred ------hh-hhhcc-------------------------cccchh--------------------hc--cchhHH-HHHH
Confidence 00 11111 111110 00 011111 3589
Q ss_pred EEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc-C-chHHHHHHHHhccCCCCCCCCchhhhhhhhccc
Q 004428 454 MIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ-N-WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDG 531 (754)
Q Consensus 454 IIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ-N-w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~ 531 (754)
|+|.||.||..+++. ..-.+-|++|+.||+||||+++.. + .+.+.+|+..+-. |.
T Consensus 265 ili~TP~ri~~~~~~-----~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s-~~----------------- 321 (593)
T KOG0344|consen 265 ILISTPMRIVGLLGL-----GKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS-PD----------------- 321 (593)
T ss_pred HHhcCHHHHHHHhcC-----CCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC-cc-----------------
Confidence 999999999999983 122245999999999999999966 3 3667777776643 22
Q ss_pred CCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhH
Q 004428 532 YSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFP 611 (754)
Q Consensus 532 ~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp 611 (754)
=-.-+||||++..+..++.....+. +.|-|... +.....|.|-+..+-.. .-++- .+.
T Consensus 322 -----i~~a~FSat~~~~VEE~~~~i~~~~-~~vivg~~-----~sa~~~V~QelvF~gse------~~K~l-----A~r 379 (593)
T KOG0344|consen 322 -----IRVALFSATISVYVEEWAELIKSDL-KRVIVGLR-----NSANETVDQELVFCGSE------KGKLL-----ALR 379 (593)
T ss_pred -----hhhhhhhccccHHHHHHHHHhhccc-eeEEEecc-----hhHhhhhhhhheeeecc------hhHHH-----HHH
Confidence 1235799999999999998877774 34433211 22355677777665322 22332 122
Q ss_pred Hh-hhcCCCcEEEEecchhcHHHHHHHH-HhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCC
Q 004428 612 KI-KDSIQGGIMLFLSSYFEFVRLRNFL-KSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGI 689 (754)
Q Consensus 612 ~l-~~~~~~~tLIFv~Sy~d~vrlrn~L-k~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV 689 (754)
++ ...-..++||||.||..+..|-.-| .-.++.+..||+..+|.+|..++.+|+.|++-||+|||+.+ ||+|++||
T Consensus 380 q~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~--RGiDf~gv 457 (593)
T KOG0344|consen 380 QLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLA--RGIDFKGV 457 (593)
T ss_pred HHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhh--ccccccCc
Confidence 23 3334689999999999999999999 88999999999999999999999999999999999999999 99999999
Q ss_pred CeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHh
Q 004428 690 QNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIV 735 (754)
Q Consensus 690 ~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIV 735 (754)
+.|||||+|....-|+||||||||++ .|.|+++|+..|...|--|+
T Consensus 458 n~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~ia 504 (593)
T KOG0344|consen 458 NLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIA 504 (593)
T ss_pred ceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHH
Confidence 99999999999999999999999998 69999999999987774444
No 36
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.7e-41 Score=377.41 Aligned_cols=356 Identities=12% Similarity=0.141 Sum_probs=284.7
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHH
Q 004428 226 LKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNH 305 (754)
Q Consensus 226 ~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNH 305 (754)
+.....|..+-|-..++..|... +|. .|||||.++||.++.+-|+++.++.| ||||.+|.+-++.-
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn----~f~-~ptkiQaaAIP~~~~kmDliVQaKSG---------TGKTlVfsv~av~s 86 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRN----AFA-LPTKIQAAAIPAIFSKMDLIVQAKSG---------TGKTLVFSVLAVES 86 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhh----ccc-CCCchhhhhhhhhhcccceEEEecCC---------CCceEEEEeeeehh
Confidence 33456688887777777777653 675 59999999999999999999999988 99999999988877
Q ss_pred HhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccc
Q 004428 306 IFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDE 385 (754)
Q Consensus 306 v~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~e 385 (754)
+.-. -..|+.|||+||||+|.||-+++.++++..... |
T Consensus 87 l~~~--------------------------------~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~------~---- 124 (980)
T KOG4284|consen 87 LDSR--------------------------------SSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA------R---- 124 (980)
T ss_pred cCcc--------------------------------cCcceeEEEecchhhhhHHHHHHHHhcccccCc------c----
Confidence 6321 135889999999999999999999998743110 1
Q ss_pred cCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHH
Q 004428 386 FGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQK 465 (754)
Q Consensus 386 fg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~l 465 (754)
..+|-| |.......++| ..+.|||+|||||..+
T Consensus 125 -----------------------------------csvfIG--------GT~~~~d~~rl----k~~rIvIGtPGRi~qL 157 (980)
T KOG4284|consen 125 -----------------------------------CSVFIG--------GTAHKLDLIRL----KQTRIVIGTPGRIAQL 157 (980)
T ss_pred -----------------------------------eEEEec--------Cchhhhhhhhh----hhceEEecCchHHHHH
Confidence 123434 33333333333 3689999999999999
Q ss_pred HhhhhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcC
Q 004428 466 MTKAEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSY 544 (754)
Q Consensus 466 I~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSA 544 (754)
++. ++-..|+|.++||||||.|+. .-+ -.+|-.++|.+|+. ||.+.|||
T Consensus 158 ~el-------~~~n~s~vrlfVLDEADkL~~t~sf--q~~In~ii~slP~~---------------------rQv~a~SA 207 (980)
T KOG4284|consen 158 VEL-------GAMNMSHVRLFVLDEADKLMDTESF--QDDINIIINSLPQI---------------------RQVAAFSA 207 (980)
T ss_pred HHh-------cCCCccceeEEEeccHHhhhchhhH--HHHHHHHHHhcchh---------------------heeeEEec
Confidence 983 666799999999999999874 333 34555667778985 99999999
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEE
Q 004428 545 HPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIML 623 (754)
Q Consensus 545 t~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLI 623 (754)
|.|..+..++.++|+.+. -|++...- .++..|+|.+.-+... ......-|++ ...|.++.. -...++||
T Consensus 208 TYp~nLdn~Lsk~mrdp~-lVr~n~~d-----~~L~GikQyv~~~~s~-nnsveemrlk---lq~L~~vf~~ipy~QAlV 277 (980)
T KOG4284|consen 208 TYPRNLDNLLSKFMRDPA-LVRFNADD-----VQLFGIKQYVVAKCSP-NNSVEEMRLK---LQKLTHVFKSIPYVQALV 277 (980)
T ss_pred cCchhHHHHHHHHhcccc-eeecccCC-----ceeechhheeeeccCC-cchHHHHHHH---HHHHHHHHhhCchHHHHh
Confidence 999999999999999964 66664331 2456799988766533 2233344433 234444433 35689999
Q ss_pred EecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCc
Q 004428 624 FLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEF 703 (754)
Q Consensus 624 Fv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pef 703 (754)
||++-..+.-+++||+..|+.+..|+|-|+|++|.-|....++-+++|||+||..+ ||+|-+.|..|||.|+|.+-+.
T Consensus 278 F~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLta--RGIDa~~vNLVVNiD~p~d~eT 355 (980)
T KOG4284|consen 278 FCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTA--RGIDADNVNLVVNIDAPADEET 355 (980)
T ss_pred hhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhh--ccCCccccceEEecCCCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hhhhccccCCCC-CceEEEEechh
Q 004428 704 YPEIVNMLEGSH-NMTCTVLFSRF 726 (754)
Q Consensus 704 Y~erigrt~ra~-~g~~~~L~sk~ 726 (754)
|.|||||.||-| .|.+++|++..
T Consensus 356 Y~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 356 YFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred HHHHhhhcccccccceeEEEeccc
Confidence 999999999988 68888887644
No 37
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-40 Score=354.66 Aligned_cols=351 Identities=17% Similarity=0.245 Sum_probs=281.3
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhC--CccEEEecCCCCccCCCCCCchhHHHHHHHHHHHH
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNS--YRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHI 306 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~--y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv 306 (754)
..+|.+|+|+|.|++.+..+ +|.. ||.||..++|+|+. -+.+++.+++| ||||+||+|-+|.+|
T Consensus 89 ~ksFeeL~LkPellkgly~M----~F~k-PskIQe~aLPlll~~Pp~nlIaQsqsG---------tGKTaaFvL~MLsrv 154 (477)
T KOG0332|consen 89 AKSFEELRLKPELLKGLYAM----KFQK-PSKIQETALPLLLAEPPQNLIAQSQSG---------TGKTAAFVLTMLSRV 154 (477)
T ss_pred cccHHhhCCCHHHHhHHHHh----ccCC-cchHHHhhcchhhcCCchhhhhhhcCC---------CchhHHHHHHHHHhc
Confidence 67899999999999999887 7764 99999999999976 67999999987 999999999999988
Q ss_pred hhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccccc
Q 004428 307 FRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEF 386 (754)
Q Consensus 307 ~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ef 386 (754)
--+ ..-|++|-|+||||||.|+.+.+.+.+.... + ...|
T Consensus 155 d~~--------------------------------~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~-i--------ta~y 193 (477)
T KOG0332|consen 155 DPD--------------------------------VVVPQCICLAPTRELAPQTGEVVEEMGKFTE-L--------TASY 193 (477)
T ss_pred Ccc--------------------------------ccCCCceeeCchHHHHHHHHHHHHHhcCcee-e--------eEEE
Confidence 432 1359999999999999999999999876541 1 1223
Q ss_pred CCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHH
Q 004428 387 GTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKM 466 (754)
Q Consensus 387 g~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI 466 (754)
.-. |+ ++.|. .|-...|||+|||-+++++
T Consensus 194 air------------------------------------~s---------k~~rG------~~i~eqIviGTPGtv~Dlm 222 (477)
T KOG0332|consen 194 AIR------------------------------------GS---------KAKRG------NKLTEQIVIGTPGTVLDLM 222 (477)
T ss_pred Eec------------------------------------Cc---------ccccC------CcchhheeeCCCccHHHHH
Confidence 211 10 11111 1134799999999999998
Q ss_pred hhhhcccccCcccCCceeEEEEecchhhh-hcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcC
Q 004428 467 TKAEENKEQDVDYLSSIEVLIIDHADIIL-MQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSY 544 (754)
Q Consensus 467 ~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSA 544 (754)
-. -....+..|.++|+||||.|+ -|.+ ++-..|+ +.+|.. -|.|+|||
T Consensus 223 ~k------lk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~---~~lP~~---------------------~QllLFSA 272 (477)
T KOG0332|consen 223 LK------LKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIM---RSLPRN---------------------QQLLLFSA 272 (477)
T ss_pred HH------HHhhChhhceEEEecchhhhhhcccccccchhhh---hhcCCc---------------------ceEEeeec
Confidence 62 133459999999999999999 3433 4444444 556754 69999999
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEE
Q 004428 545 HPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLF 624 (754)
Q Consensus 545 t~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIF 624 (754)
|+...+..++.+...|. -.+.++... ..+..|+|.|..+.+. +.+|+..++ |.-. -..+++|||
T Consensus 273 Tf~e~V~~Fa~kivpn~-n~i~Lk~ee-----l~L~~IkQlyv~C~~~------~~K~~~l~~-lyg~---~tigqsiIF 336 (477)
T KOG0332|consen 273 TFVEKVAAFALKIVPNA-NVIILKREE-----LALDNIKQLYVLCACR------DDKYQALVN-LYGL---LTIGQSIIF 336 (477)
T ss_pred hhHHHHHHHHHHhcCCC-ceeeeehhh-----ccccchhhheeeccch------hhHHHHHHH-HHhh---hhhhheEEE
Confidence 99999999999999985 466666541 2467899999886653 557764443 3222 246899999
Q ss_pred ecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC-----
Q 004428 625 LSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE----- 699 (754)
Q Consensus 625 v~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~----- 699 (754)
|.++..+..|...|...|..+..+||.++-.+|.+....|+.|+-+|||+|++.+ ||+|+.-|+.|||||||.
T Consensus 337 c~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~A--RGiDv~qVs~VvNydlP~~~~~~ 414 (477)
T KOG0332|consen 337 CHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCA--RGIDVAQVSVVVNYDLPVKYTGE 414 (477)
T ss_pred EeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhh--cccccceEEEEEecCCccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999996
Q ss_pred -CCCchhhhccccCCCC-CceEEEEec-hhcHHHHHH
Q 004428 700 -RKEFYPEIVNMLEGSH-NMTCTVLFS-RFDMLRLER 733 (754)
Q Consensus 700 -~pefY~erigrt~ra~-~g~~~~L~s-k~D~~~LEr 733 (754)
+++.|.||||||||-| .|.++.|+. +++...|++
T Consensus 415 pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~ 451 (477)
T KOG0332|consen 415 PDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNK 451 (477)
T ss_pred CCHHHHHHHhcccccccccceEEEeecccCcHHHHHH
Confidence 5788999999999998 799999884 455444433
No 38
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=9.8e-39 Score=376.55 Aligned_cols=354 Identities=13% Similarity=0.081 Sum_probs=251.6
Q ss_pred CCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCcccc
Q 004428 236 GLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTK 315 (754)
Q Consensus 236 ~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~k 315 (754)
.|++.|.++|.+. |+.. |||+|+++||.+++|+||+++++|| +|||.||+||+|+++.+.
T Consensus 20 ~l~~~l~~~L~~~----g~~~-p~~~Q~~ai~~il~G~nvvv~apTG---------SGKTla~~LPiL~~l~~~------ 79 (742)
T TIGR03817 20 WAHPDVVAALEAA----GIHR-PWQHQARAAELAHAGRHVVVATGTA---------SGKSLAYQLPVLSALADD------ 79 (742)
T ss_pred cCCHHHHHHHHHc----CCCc-CCHHHHHHHHHHHCCCCEEEECCCC---------CcHHHHHHHHHHHHHhhC------
Confidence 3788999998774 8876 8999999999999999999999998 899999999999999642
Q ss_pred chhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCc
Q 004428 316 NDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDK 395 (754)
Q Consensus 316 nn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~ 395 (754)
..+++|||+|||+||.|+...+.+++.. . + +. ..|+|.
T Consensus 80 ---------------------------~~~~aL~l~PtraLa~q~~~~l~~l~~~-~-i------~v-~~~~Gd------ 117 (742)
T TIGR03817 80 ---------------------------PRATALYLAPTKALAADQLRAVRELTLR-G-V------RP-ATYDGD------ 117 (742)
T ss_pred ---------------------------CCcEEEEEcChHHHHHHHHHHHHHhccC-C-e------EE-EEEeCC------
Confidence 1378999999999999999999998621 1 1 11 223322
Q ss_pred ccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhccccc
Q 004428 396 DDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQ 475 (754)
Q Consensus 396 ~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~r 475 (754)
.. .-+|+.++ .+++|||+||..|...+-.. ..+
T Consensus 118 --------------------------------t~-------~~~r~~i~-----~~~~IivtTPd~L~~~~L~~---~~~ 150 (742)
T TIGR03817 118 --------------------------------TP-------TEERRWAR-----EHARYVLTNPDMLHRGILPS---HAR 150 (742)
T ss_pred --------------------------------CC-------HHHHHHHh-----cCCCEEEEChHHHHHhhccc---hhH
Confidence 10 00222232 35899999999987533210 111
Q ss_pred CcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHH
Q 004428 476 DVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFN 555 (754)
Q Consensus 476 d~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~ 555 (754)
...||+.+++|||||||.|+..+-.|+..++..|..+ ... ...-+|+|+||||++.... ++.
T Consensus 151 ~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri------------~~~-----~g~~~q~i~~SATi~n~~~-~~~ 212 (742)
T TIGR03817 151 WARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLRRL------------CAR-----YGASPVFVLASATTADPAA-AAS 212 (742)
T ss_pred HHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHHHH------------HHh-----cCCCCEEEEEecCCCCHHH-HHH
Confidence 2346999999999999999854456777777665321 111 0113899999999997654 566
Q ss_pred HhhcCCCceEEEeecccCcccccccceeEEEEEec---cCc----c--cchhHHHHHHHHHHHhHHhhhcCCCcEEEEec
Q 004428 556 HHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFN---ADS----I--AKADDARLEYFTKKVFPKIKDSIQGGIMLFLS 626 (754)
Q Consensus 556 ~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~---~~s----~--~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~ 626 (754)
.++.++ +.+... .+. ........+.... ... . ......+. .+|..+... ..++||||+
T Consensus 213 ~l~g~~---~~~i~~-~~~---~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~-----~~l~~l~~~-~~~~IVF~~ 279 (742)
T TIGR03817 213 RLIGAP---VVAVTE-DGS---PRGARTVALWEPPLTELTGENGAPVRRSASAEAA-----DLLADLVAE-GARTLTFVR 279 (742)
T ss_pred HHcCCC---eEEECC-CCC---CcCceEEEEecCCccccccccccccccchHHHHH-----HHHHHHHHC-CCCEEEEcC
Confidence 665553 222111 111 0111111111100 000 0 00011122 233333332 469999999
Q ss_pred chhcHHHHHHHHHhC--------CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCC
Q 004428 627 SYFEFVRLRNFLKSQ--------NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLP 698 (754)
Q Consensus 627 Sy~d~vrlrn~Lk~~--------~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP 698 (754)
|...+..|..+|++. +..+..+|+.++|.+|.++.+.|++|++++||+|+.+. ||+||.+|++||||++|
T Consensus 280 sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~le--rGIDI~~vd~VI~~~~P 357 (742)
T TIGR03817 280 SRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALE--LGVDISGLDAVVIAGFP 357 (742)
T ss_pred CHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHh--ccCCcccccEEEEeCCC
Confidence 999999999998763 56788999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCchhhhccccCCCC-CceEEEEec--hhcHHHH
Q 004428 699 ERKEFYPEIVNMLEGSH-NMTCTVLFS--RFDMLRL 731 (754)
Q Consensus 699 ~~pefY~erigrt~ra~-~g~~~~L~s--k~D~~~L 731 (754)
.++..|.||+||+||.+ .|.|+++.+ ..|...+
T Consensus 358 ~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~ 393 (742)
T TIGR03817 358 GTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLV 393 (742)
T ss_pred CCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHH
Confidence 99999999999999988 577887775 4564433
No 39
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.4e-34 Score=322.31 Aligned_cols=330 Identities=14% Similarity=0.119 Sum_probs=233.7
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
-|+.. ++|+|+++||.+++++|+++.++|| +|||.+|+||+|..
T Consensus 7 ~g~~~-~r~~Q~~ai~~~l~g~dvlv~apTG---------sGKTl~y~lp~l~~-------------------------- 50 (470)
T TIGR00614 7 FGLSS-FRPVQLEVINAVLLGRDCFVVMPTG---------GGKSLCYQLPALCS-------------------------- 50 (470)
T ss_pred cCCCC-CCHHHHHHHHHHHcCCCEEEEcCCC---------CcHhHHHHHHHHHc--------------------------
Confidence 37776 8999999999999999999999998 89999999998731
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
.+.+|||+|||+|+.|.+..+..+.... ..+++...
T Consensus 51 ------------~~~~lVi~P~~~L~~dq~~~l~~~gi~~------------~~l~~~~~-------------------- 86 (470)
T TIGR00614 51 ------------DGITLVISPLISLMEDQVLQLKASGIPA------------TFLNSSQS-------------------- 86 (470)
T ss_pred ------------CCcEEEEecHHHHHHHHHHHHHHcCCcE------------EEEeCCCC--------------------
Confidence 1247999999999999999887653211 01111100
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
+ .-.+..++... -...+||++||.+|.....-- .....+..|.++|||||
T Consensus 87 -----~-------------------~~~~~i~~~~~-~~~~~il~~TPe~l~~~~~~~-----~~l~~~~~i~~iViDEa 136 (470)
T TIGR00614 87 -----K-------------------EQQKNVLTDLK-DGKIKLLYVTPEKCSASNRLL-----QTLEERKGITLIAVDEA 136 (470)
T ss_pred -----H-------------------HHHHHHHHHHh-cCCCCEEEECHHHHcCchhHH-----HHHHhcCCcCEEEEeCC
Confidence 0 00000111111 135799999999986422100 01114678999999999
Q ss_pred hhhhhcCchH-----HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEE
Q 004428 492 DIILMQNWSW-----LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVK 566 (754)
Q Consensus 492 D~mLmQNw~h-----v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vk 566 (754)
|.|+. |.| +..|-......|. .|.|+||||.++.+...+...+.-....+.
T Consensus 137 H~i~~--~g~~fr~~~~~l~~l~~~~~~----------------------~~~l~lTAT~~~~~~~di~~~l~l~~~~~~ 192 (470)
T TIGR00614 137 HCISQ--WGHDFRPDYKALGSLKQKFPN----------------------VPIMALTATASPSVREDILRQLNLKNPQIF 192 (470)
T ss_pred cccCc--cccccHHHHHHHHHHHHHcCC----------------------CceEEEecCCCHHHHHHHHHHcCCCCCcEE
Confidence 99873 543 2222222222232 689999999999887655444321111221
Q ss_pred EeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhc-CCCcEEEEecchhcHHHHHHHHHhCCCce
Q 004428 567 LACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDS-IQGGIMLFLSSYFEFVRLRNFLKSQNASF 645 (754)
Q Consensus 567 v~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~-~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f 645 (754)
.. . .. .+++ ++.+.... ...+ ..++..+... ....+||||+|..++..|...|++.++++
T Consensus 193 ~~-s----~~--r~nl---~~~v~~~~-----~~~~----~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~ 253 (470)
T TIGR00614 193 CT-S----FD--RPNL---YYEVRRKT-----PKIL----EDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAA 253 (470)
T ss_pred eC-C----CC--CCCc---EEEEEeCC-----ccHH----HHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCe
Confidence 11 0 01 1112 22222111 0111 1244444322 33456999999999999999999999999
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEec
Q 004428 646 CLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFS 724 (754)
Q Consensus 646 ~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~s 724 (754)
..+|+.+++.+|.++...|+.|+++|||+|+.+. ||+|+++|++||+|++|.+++.|.||+||+||.+ .+.|+++|+
T Consensus 254 ~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~--~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~ 331 (470)
T TIGR00614 254 GAYHAGLEISARDDVHHKFQRDEIQVVVATVAFG--MGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYA 331 (470)
T ss_pred eEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhh--ccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEec
Confidence 9999999999999999999999999999999988 9999999999999999999999999999999988 689999999
Q ss_pred hhcHHHHHHHhC
Q 004428 725 RFDMLRLERIVG 736 (754)
Q Consensus 725 k~D~~~LErIVG 736 (754)
..|...+.+++.
T Consensus 332 ~~d~~~~~~~~~ 343 (470)
T TIGR00614 332 PADINRLRRLLM 343 (470)
T ss_pred hhHHHHHHHHHh
Confidence 999888877654
No 40
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.5e-34 Score=336.70 Aligned_cols=339 Identities=13% Similarity=0.079 Sum_probs=236.9
Q ss_pred CCCCCCCCHHHHHHhhhhhCCc-cEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYR-DILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEG 330 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~-Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~ 330 (754)
.||. |||+|++++|.+++|+ |++.+++|| +|||+++++++|.. ..
T Consensus 12 ~G~~--PtpiQ~~~i~~il~G~~~v~~~apTG---------SGKTaa~aafll~~-~~---------------------- 57 (844)
T TIGR02621 12 HGYS--PFPWQLSLAERFVAGQPPESCSTPTG---------LGKTSIIAAWLLAV-EI---------------------- 57 (844)
T ss_pred hCCC--CCHHHHHHHHHHHcCCCcceEecCCC---------CcccHHHHHhhccc-cc----------------------
Confidence 3775 9999999999999999 577789998 89999887776631 10
Q ss_pred cccccccccCCCCCceEEE-EccchhHHHHHHHHHHHhCCcccccc-cc-cccccccccCCCccccCcccchhhhccccc
Q 004428 331 ILIGDAFLDRGFTRPKVLI-LLPLKSIALNVVKRLIRLTPDAHKVN-VE-HIDRFCDEFGTKKEEEDKDDDDASQNIRGT 407 (754)
Q Consensus 331 ~~~~~~~RDQGftRPkVLI-L~PTRelA~qIv~~l~~L~~~~~~~~-v~-nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~ 407 (754)
+-..|++|| ++||||||.|+.+.+.+++....... +. ...++... ...
T Consensus 58 ----------~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~-~~~------------------ 108 (844)
T TIGR02621 58 ----------GAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCST-RPE------------------ 108 (844)
T ss_pred ----------cccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhcc-ccc------------------
Confidence 013578888 55999999999999999865321000 00 00111100 000
Q ss_pred ccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcc---------
Q 004428 408 RKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVD--------- 478 (754)
Q Consensus 408 ~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~d--------- 478 (754)
....|.....++||. .+.++...+ . .+++||||| .++|++ ...
T Consensus 109 -----~~~~~l~v~~l~GG~---------~~~~q~~~l-~--~~p~IIVgT----~D~i~s-------r~L~~gYg~~~~ 160 (844)
T TIGR02621 109 -----KKDRPLAISTLRGQF---------ADNDEWMLD-P--HRPAVIVGT----VDMIGS-------RLLFSGYGCGFK 160 (844)
T ss_pred -----cccCCeEEEEEECCC---------ChHHHHHhc-C--CCCcEEEEC----HHHHcC-------Cccccccccccc
Confidence 223455667778873 333333332 2 579999999 477762 222
Q ss_pred -------cCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHH
Q 004428 479 -------YLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEIN 551 (754)
Q Consensus 479 -------fLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pein 551 (754)
+|+.+.+||||||| +.|++.+.+..|+..+...|.. .-||||+||||++.++.
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD-Ld~gF~~~l~~Il~~l~rp~~~-------------------rprQtLLFSAT~p~ei~ 220 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH-LEPAFQELLKQIMNEQQRPPDF-------------------LPLRVVELTATSRTDGP 220 (844)
T ss_pred cccchhhhhccceEEEEehhh-hccccHHHHHHHHHhcccCccc-------------------ccceEEEEecCCCccHH
Confidence 48999999999999 6688888888888865322211 12799999999999999
Q ss_pred HHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcH
Q 004428 552 AFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEF 631 (754)
Q Consensus 552 sL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~ 631 (754)
.+...++.+.. .+.+.... ....++.|. + .... +.++..++..+. .+.....+++||||+|...+
T Consensus 221 ~l~~~~~~~p~-~i~V~~~~-----l~a~ki~q~-v--~v~~-----e~Kl~~lv~~L~-~ll~e~g~~vLVF~NTv~~A 285 (844)
T TIGR02621 221 DRTTLLSAEDY-KHPVLKKR-----LAAKKIVKL-V--PPSD-----EKFLSTMVKELN-LLMKDSGGAILVFCRTVKHV 285 (844)
T ss_pred HHHHHHccCCc-eeeccccc-----ccccceEEE-E--ecCh-----HHHHHHHHHHHH-HHHhhCCCcEEEEECCHHHH
Confidence 88877765532 33332211 123456663 2 2211 223444443332 22233457899999999999
Q ss_pred HHHHHHHHhCCCceEeecCCCCHHHHH-----HHHHHHhc----CC-------ccEEEEcccccccCccccCCCCeEEEc
Q 004428 632 VRLRNFLKSQNASFCLLGDYTEPSDIS-----RARVWFFE----GK-------RKMILYTERSHFYHRYKIRGIQNLIIY 695 (754)
Q Consensus 632 vrlrn~Lk~~~~~f~~Ihey~sq~~r~-----rar~~F~~----G~-------~~ILL~TErahffRr~dIkgV~~VIfY 695 (754)
.+|.+.|++.++ ..||+.++|.+|. ++++.|++ |. .+|||+|+++. ||+||.. .+||+|
T Consensus 286 q~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae--rGLDId~-d~VI~d 360 (844)
T TIGR02621 286 RKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE--VGVNISA-DHLVCD 360 (844)
T ss_pred HHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh--hcccCCc-ceEEEC
Confidence 999999999887 9999999999999 88999998 54 78999999999 9999987 899999
Q ss_pred cCCCCCCchhhhccccCCCCC--ceEEEEe
Q 004428 696 SLPERKEFYPEIVNMLEGSHN--MTCTVLF 723 (754)
Q Consensus 696 ~lP~~pefY~erigrt~ra~~--g~~~~L~ 723 (754)
..| ++.|+||+||++|.+. +.+++++
T Consensus 361 ~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 361 LAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred CCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 888 5899999999999873 3334444
No 41
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.5e-34 Score=351.18 Aligned_cols=329 Identities=14% Similarity=0.122 Sum_probs=228.0
Q ss_pred HHHHHHhhhC-CCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhh
Q 004428 243 KHWLDIYNKS-GGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVA 321 (754)
Q Consensus 243 ~~~~~~~~~~-g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~ 321 (754)
+.|.+.+++. |+ . |||+|+.++|.++.|+|++++|+|| +||| +|+++++.++..
T Consensus 67 ~~~~~~f~~~~G~-~-pt~iQ~~~i~~il~g~dv~i~ApTG---------sGKT-~f~l~~~~~l~~------------- 121 (1176)
T PRK09401 67 KEFEKFFKKKTGS-K-PWSLQRTWAKRLLLGESFAIIAPTG---------VGKT-TFGLVMSLYLAK------------- 121 (1176)
T ss_pred HHHHHHHHHhcCC-C-CcHHHHHHHHHHHCCCcEEEEcCCC---------CCHH-HHHHHHHHHHHh-------------
Confidence 3444444443 44 4 8999999999999999999999998 8999 477777665521
Q ss_pred hhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhh
Q 004428 322 KNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDAS 401 (754)
Q Consensus 322 ~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~ 401 (754)
+ .+++|||+|||+||.|+++.+.+++.... + +....+|+.
T Consensus 122 ------------------~---g~~alIL~PTreLa~Qi~~~l~~l~~~~~---~----~~~~~~g~~------------ 161 (1176)
T PRK09401 122 ------------------K---GKKSYIIFPTRLLVEQVVEKLEKFGEKVG---C----GVKILYYHS------------ 161 (1176)
T ss_pred ------------------c---CCeEEEEeccHHHHHHHHHHHHHHhhhcC---c----eEEEEEccC------------
Confidence 1 36899999999999999999999975432 0 111122211
Q ss_pred hcccccccCCCCCCCCCCceeeccCCCCCccccccc-ccH-HHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCccc
Q 004428 402 QNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIK-FTR-KSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDY 479 (754)
Q Consensus 402 ~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik-~tr-k~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~df 479 (754)
++. -++ ...+.+.. ..+|||||||++|..++. ...
T Consensus 162 ---------------------------------~~~~~ek~~~~~~l~~-~~~~IlV~Tp~rL~~~~~---------~l~ 198 (1176)
T PRK09401 162 ---------------------------------SLKKKEKEEFLERLKE-GDFDILVTTSQFLSKNFD---------ELP 198 (1176)
T ss_pred ---------------------------------CcchhHHHHHHHHHhc-CCCCEEEECHHHHHHHHH---------hcc
Confidence 010 011 11111111 358999999999998875 123
Q ss_pred CCceeEEEEecchhhh------------hcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhc--ccCCCccccEEEEcC
Q 004428 480 LSSIEVLIIDHADIIL------------MQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYL--DGYSRFYRQTVLLSY 544 (754)
Q Consensus 480 LSSIEiLVlDeAD~mL------------mQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L--~~~ak~~RQTllFSA 544 (754)
+..+.+|||||||+|| |++- +.+..+++.++. ++...-+..+++.+-- ......-+|+|+|||
T Consensus 199 ~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~--~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSA 276 (1176)
T PRK09401 199 KKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRL--KRKYEEIYEKIRELEEKIAELKDKKGVLVVSSA 276 (1176)
T ss_pred ccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhccc--ccccchhhhHHHHHHHhhhhcccCCceEEEEeC
Confidence 5569999999999998 4443 467777766632 0101223334433321 111222699999999
Q ss_pred CCCHH-HHH-HHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEE
Q 004428 545 HPNPE-INA-FFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIM 622 (754)
Q Consensus 545 t~~pe-ins-L~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tL 622 (754)
|++|. +.. +++ ++- .+.+.. ......+|.|.|..++ . +...+. .++.. ...++|
T Consensus 277 T~~~~~~~~~l~~----~ll-~~~v~~-----~~~~~rnI~~~yi~~~--~-------k~~~L~-~ll~~----l~~~~L 332 (1176)
T PRK09401 277 TGRPRGNRVKLFR----ELL-GFEVGS-----PVFYLRNIVDSYIVDE--D-------SVEKLV-ELVKR----LGDGGL 332 (1176)
T ss_pred CCCccchHHHHhh----ccc-eEEecC-----cccccCCceEEEEEcc--c-------HHHHHH-HHHHh----cCCCEE
Confidence 99986 443 232 321 123321 1234567889888643 1 222111 22222 236899
Q ss_pred EEecchhc---HHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEE----cccccccCccccCC-CCeEEE
Q 004428 623 LFLSSYFE---FVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILY----TERSHFYHRYKIRG-IQNLII 694 (754)
Q Consensus 623 IFv~Sy~d---~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~----TErahffRr~dIkg-V~~VIf 694 (754)
|||++... +.+|.++|+..|+++..+|+.+ .+++..|++|+++|||+ ||+++ ||+||++ |++|||
T Consensus 333 IFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~a--RGIDiP~~IryVI~ 405 (1176)
T PRK09401 333 IFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLV--RGIDLPERIRYAIF 405 (1176)
T ss_pred EEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCcee--ecCCCCcceeEEEE
Confidence 99999888 9999999999999999999999 45679999999999999 79999 9999999 899999
Q ss_pred ccCCC------CCCchhhhccccC
Q 004428 695 YSLPE------RKEFYPEIVNMLE 712 (754)
Q Consensus 695 Y~lP~------~pefY~erigrt~ 712 (754)
|++|. ..+.|+|+++|+-
T Consensus 406 y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 406 YGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred eCCCCEEEeccccccCHHHHHHHH
Confidence 99999 8899999999984
No 42
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-35 Score=300.17 Aligned_cols=319 Identities=18% Similarity=0.258 Sum_probs=243.6
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
..|.++-|+|.|+.++-+ +|+.. |+.+|.++||...-|-||+..|++| -|||++|+|-.|++|-..
T Consensus 42 sgfrdfllkpellraivd----cgfeh-psevqhecipqailgmdvlcqaksg---------mgktavfvl~tlqqiepv 107 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVD----CGFEH-PSEVQHECIPQAILGMDVLCQAKSG---------MGKTAVFVLATLQQIEPV 107 (387)
T ss_pred cchhhhhcCHHHHHHHHh----ccCCC-chHhhhhhhhHHhhcchhheecccC---------CCceeeeehhhhhhcCCC
Confidence 458899999999999988 59875 9999999999999999999999988 789999999999988432
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
.| ...||++|-|||||+||.+....++.....+.
T Consensus 108 ------------------------------~g--~vsvlvmchtrelafqi~~ey~rfskymP~vk-------------- 141 (387)
T KOG0329|consen 108 ------------------------------DG--QVSVLVMCHTRELAFQISKEYERFSKYMPSVK-------------- 141 (387)
T ss_pred ------------------------------CC--eEEEEEEeccHHHHHHHHHHHHHHHhhCCCce--------------
Confidence 12 46799999999999999999988875543111
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
.++|=| |+.+.+. ..++. .-++|+||||||+..++.+
T Consensus 142 -------------------------------vaVFfG--------G~~Ikkd-ee~lk--~~PhivVgTPGrilALvr~- 178 (387)
T KOG0329|consen 142 -------------------------------VSVFFG--------GLFIKKD-EELLK--NCPHIVVGTPGRILALVRN- 178 (387)
T ss_pred -------------------------------EEEEEc--------ceecccc-HHHHh--CCCeEEEcCcHHHHHHHHh-
Confidence 122222 3444432 22333 3799999999999999873
Q ss_pred hcccccCcccCCceeEEEEecchhhhhc--CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIILMQ--NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mLmQ--Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
....|+++..+||||+|.||.| =|..+..|+. ..|.+ .|.|+||||++
T Consensus 179 ------k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr---~tp~~---------------------KQvmmfsatls 228 (387)
T KOG0329|consen 179 ------RSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFR---MTPHE---------------------KQVMMFSATLS 228 (387)
T ss_pred ------ccCchhhcceeehhhHHHHHHHHHHHHHHHHHhh---cCccc---------------------ceeeeeeeecc
Confidence 3456999999999999999843 2556666664 45765 89999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
.+|+-+.+++++++ -.|-+..+.+ -....++|.|.++....+ .-|+ ..+|.. ....+++|||.|
T Consensus 229 keiRpvC~kFmQdP-mEi~vDdE~K----LtLHGLqQ~YvkLke~eK----Nrkl----~dLLd~---LeFNQVvIFvKs 292 (387)
T KOG0329|consen 229 KEIRPVCHKFMQDP-MEIFVDDEAK----LTLHGLQQYYVKLKENEK----NRKL----NDLLDV---LEFNQVVIFVKS 292 (387)
T ss_pred hhhHHHHHhhhcCc-hhhhccchhh----hhhhhHHHHHHhhhhhhh----hhhh----hhhhhh---hhhcceeEeeeh
Confidence 99999999999996 3555544422 135578999998764321 1111 123333 357899999987
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
-.. ++ | +.+ ||+|+++. ||+||..|.-|||||+|.+++.|.||
T Consensus 293 v~R------------------------------l~-f---~kr-~vat~lfg--rgmdiervNi~~NYdmp~~~DtYlHr 335 (387)
T KOG0329|consen 293 VQR------------------------------LS-F---QKR-LVATDLFG--RGMDIERVNIVFNYDMPEDSDTYLHR 335 (387)
T ss_pred hhh------------------------------hh-h---hhh-hHHhhhhc--cccCcccceeeeccCCCCCchHHHHH
Confidence 643 11 3 344 99999987 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEec-hhcHHHHHHH
Q 004428 708 VNMLEGSH-NMTCTVLFS-RFDMLRLERI 734 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~s-k~D~~~LErI 734 (754)
++|+||-| .|.++++++ ..|+.-|..+
T Consensus 336 v~rAgrfGtkglaitfvs~e~da~iLn~v 364 (387)
T KOG0329|consen 336 VARAGRFGTKGLAITFVSDENDAKILNPV 364 (387)
T ss_pred hhhhhccccccceeehhcchhhHHHhchh
Confidence 99999988 799999886 4466655443
No 43
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1e-32 Score=329.04 Aligned_cols=347 Identities=13% Similarity=0.169 Sum_probs=240.4
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccc
Q 004428 235 YGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVT 314 (754)
Q Consensus 235 l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~ 314 (754)
+.....|...++..+ |+.. ++|+|+++|+.+++|+|++++++|| +||+.+|.||+|.+
T Consensus 442 fpw~~~L~~~lk~~F---G~~s-FRp~Q~eaI~aiL~GrDVLVimPTG---------SGKSLcYQLPAL~~--------- 499 (1195)
T PLN03137 442 FPWTKKLEVNNKKVF---GNHS-FRPNQREIINATMSGYDVFVLMPTG---------GGKSLTYQLPALIC--------- 499 (1195)
T ss_pred CCchHHHHHHHHHHc---CCCC-CCHHHHHHHHHHHcCCCEEEEcCCC---------ccHHHHHHHHHHHc---------
Confidence 445556666666654 7766 7999999999999999999999999 89999999999841
Q ss_pred cchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccC
Q 004428 315 KNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEED 394 (754)
Q Consensus 315 knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~ 394 (754)
...+|||+|||+|+.+.|..+..+.-.. ....|+.
T Consensus 500 -----------------------------~GiTLVISPLiSLmqDQV~~L~~~GI~A-----------a~L~s~~----- 534 (1195)
T PLN03137 500 -----------------------------PGITLVISPLVSLIQDQIMNLLQANIPA-----------ASLSAGM----- 534 (1195)
T ss_pred -----------------------------CCcEEEEeCHHHHHHHHHHHHHhCCCeE-----------EEEECCC-----
Confidence 0247999999999986666665542110 0111211
Q ss_pred cccchhhhcccccccCCCCCCCCCCceeeccCCCCCccccccccc--HHHHh-hhcccCCCCEEEeCchhHHH---HHhh
Q 004428 395 KDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFT--RKSIK-LYNDFYTSDMIVASPINLHQ---KMTK 468 (754)
Q Consensus 395 ~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~t--rk~lk-Lys~Fy~sDIIVASPlgLr~---lI~~ 468 (754)
... ++.++ +.+.....+||++||.+|.. ++..
T Consensus 535 ------------------------------------------s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~ 572 (1195)
T PLN03137 535 ------------------------------------------EWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRH 572 (1195)
T ss_pred ------------------------------------------CHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHH
Confidence 111 11122 11222458999999999862 2221
Q ss_pred hhcccccCcccCCceeEEEEecchhhhhcCchH-HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILMQNWSW-LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~h-v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
- ........|.++||||||.|+. |.| +..-...| ..++..+ .-+|+++||||.+
T Consensus 573 L-----~~L~~~~~LslIVIDEAHcVSq--WGhDFRpdYr~L------------~~Lr~~f------p~vPilALTATAT 627 (1195)
T PLN03137 573 L-----ENLNSRGLLARFVIDEAHCVSQ--WGHDFRPDYQGL------------GILKQKF------PNIPVLALTATAT 627 (1195)
T ss_pred H-----HhhhhccccceeccCcchhhhh--cccchHHHHHHH------------HHHHHhC------CCCCeEEEEecCC
Confidence 0 0111134488999999999984 653 11111111 0111111 1278999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhc-CCCcEEEEec
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDS-IQGGIMLFLS 626 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~-~~~~tLIFv~ 626 (754)
+.+..-+.+.+.... .+.+. +... .+++ ++.|-... ..... .|+..+... .....||||.
T Consensus 628 ~~V~eDI~~~L~l~~-~~vfr----~Sf~--RpNL---~y~Vv~k~-----kk~le----~L~~~I~~~~~~esgIIYC~ 688 (1195)
T PLN03137 628 ASVKEDVVQALGLVN-CVVFR----QSFN--RPNL---WYSVVPKT-----KKCLE----DIDKFIKENHFDECGIIYCL 688 (1195)
T ss_pred HHHHHHHHHHcCCCC-cEEee----cccC--ccce---EEEEeccc-----hhHHH----HHHHHHHhcccCCCceeEeC
Confidence 998876555543321 12111 1111 1122 22222111 11111 232223222 2457899999
Q ss_pred chhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhh
Q 004428 627 SYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPE 706 (754)
Q Consensus 627 Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~e 706 (754)
|..++.+|..+|.+.|+.+..+|+.+++.+|.++.+.|..|+++|||||+.|. +|+|+++|+.||+|++|.+++.|.|
T Consensus 689 SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFG--MGIDkPDVR~VIHydlPkSiEsYyQ 766 (1195)
T PLN03137 689 SRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFG--MGINKPDVRFVIHHSLPKSIEGYHQ 766 (1195)
T ss_pred chhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhh--cCCCccCCcEEEEcCCCCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988 9999999999999999999999999
Q ss_pred hccccCCCC-CceEEEEechhcHHHHHHHhC
Q 004428 707 IVNMLEGSH-NMTCTVLFSRFDMLRLERIVG 736 (754)
Q Consensus 707 rigrt~ra~-~g~~~~L~sk~D~~~LErIVG 736 (754)
++||+||.| .+.|+.||+..|...+..++.
T Consensus 767 riGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 767 ECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred hhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999998 689999999999988877763
No 44
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.3e-32 Score=318.17 Aligned_cols=327 Identities=13% Similarity=0.168 Sum_probs=229.8
Q ss_pred CHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHH---------HHHHHHHHHhhcCCccccchhhhhhhcccccc
Q 004428 259 SSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMET---------YLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKE 329 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~a---------y~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~ 329 (754)
..+|++++|.+.+++||+..|+|| +|||.+ |+++.+.++.+-..
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TG---------SGKTtqvPq~l~~~~flf~~l~~l~~~~~------------------ 218 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTG---------VGKTSQVPKLLLWFNYLFGGFDNLDKIDP------------------ 218 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCC---------CCchhHHHHHHHHhhhccchhhhhhhccc------------------
Confidence 469999999999999999999999 899987 65666666532100
Q ss_pred ccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhccccccc
Q 004428 330 GILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRK 409 (754)
Q Consensus 330 ~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~ 409 (754)
. +..++|||++|||+||.|+...+.+..+... .+..+.
T Consensus 219 ----------~-~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~----~~g~~v--------------------------- 256 (675)
T PHA02653 219 ----------N-FIERPIVLSLPRVALVRLHSITLLKSLGFDE----IDGSPI--------------------------- 256 (675)
T ss_pred ----------c-cCCcEEEEECcHHHHHHHHHHHHHHHhCccc----cCCceE---------------------------
Confidence 0 1246899999999999999999887654321 000111
Q ss_pred CCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEe
Q 004428 410 SNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIID 489 (754)
Q Consensus 410 ~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlD 489 (754)
...|+|..+ .... +.....+|||+||+ | . .-+|+.+.++|||
T Consensus 257 -----------~v~~Gg~~~-----------~~~~--t~~k~~~Ilv~T~~-L----~---------l~~L~~v~~VVID 298 (675)
T PHA02653 257 -----------SLKYGSIPD-----------ELIN--TNPKPYGLVFSTHK-L----T---------LNKLFDYGTVIID 298 (675)
T ss_pred -----------EEEECCcch-----------HHhh--cccCCCCEEEEeCc-c----c---------ccccccCCEEEcc
Confidence 223444210 0000 01124799999975 2 1 1259999999999
Q ss_pred cchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEee
Q 004428 490 HADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLAC 569 (754)
Q Consensus 490 eAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~ 569 (754)
|||.++... +.+..++.. ++.+ .||+++||||+++++..+ .+++.|+ ..|.+.
T Consensus 299 EaHEr~~~~-DllL~llk~---~~~~--------------------~rq~ILmSATl~~dv~~l-~~~~~~p-~~I~I~- 351 (675)
T PHA02653 299 EVHEHDQIG-DIIIAVARK---HIDK--------------------IRSLFLMTATLEDDRDRI-KEFFPNP-AFVHIP- 351 (675)
T ss_pred ccccCccch-hHHHHHHHH---hhhh--------------------cCEEEEEccCCcHhHHHH-HHHhcCC-cEEEeC-
Confidence 999997332 445444432 2221 379999999999998876 6788775 355542
Q ss_pred cccCcccccccceeEEEEEeccCcccch---hHHHHHHHHHHHhHHhhh---cCCCcEEEEecchhcHHHHHHHHHhC--
Q 004428 570 EYKGVLPKVLLNVRQIYERFNADSIAKA---DDARLEYFTKKVFPKIKD---SIQGGIMLFLSSYFEFVRLRNFLKSQ-- 641 (754)
Q Consensus 570 ~~~g~i~~v~~~I~Q~f~r~~~~s~~~~---~d~Rf~yF~~~iLp~l~~---~~~~~tLIFv~Sy~d~vrlrn~Lk~~-- 641 (754)
| ....+|+|.|........... ...+. .++..+.. ...+.+|||||+..+..++...|.+.
T Consensus 352 ---g---rt~~pV~~~yi~~~~~~~~~~~y~~~~k~-----~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~ 420 (675)
T PHA02653 352 ---G---GTLFPISEVYVKNKYNPKNKRAYIEEEKK-----NIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLP 420 (675)
T ss_pred ---C---CcCCCeEEEEeecCcccccchhhhHHHHH-----HHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcC
Confidence 2 234578888865332100000 01111 12222222 23468999999999999999999987
Q ss_pred CCceEeecCCCCHHHHHHHHHHH-hcCCccEEEEcccccccCccccCCCCeEEEcc---CCC---------CCCchhhhc
Q 004428 642 NASFCLLGDYTEPSDISRARVWF-FEGKRKMILYTERSHFYHRYKIRGIQNLIIYS---LPE---------RKEFYPEIV 708 (754)
Q Consensus 642 ~~~f~~Ihey~sq~~r~rar~~F-~~G~~~ILL~TErahffRr~dIkgV~~VIfY~---lP~---------~pefY~eri 708 (754)
++.+..||+.++|. .+++..| ++|+.+|||+||+|. ||+||+||.+||+|+ .|. +...|.||+
T Consensus 421 ~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAE--RGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRa 496 (675)
T PHA02653 421 IYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLE--SSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRK 496 (675)
T ss_pred CceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhh--ccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhc
Confidence 79999999999986 4667777 689999999999999 999999999999999 564 556899999
Q ss_pred cccCCCCCceEEEEechhcHHHHHHH
Q 004428 709 NMLEGSHNMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 709 grt~ra~~g~~~~L~sk~D~~~LErI 734 (754)
||+||...|.|+.||++.+...+.++
T Consensus 497 GRAGR~~~G~c~rLyt~~~~~pI~ri 522 (675)
T PHA02653 497 GRVGRVSPGTYVYFYDLDLLKPIKRI 522 (675)
T ss_pred cCcCCCCCCeEEEEECHHHhHHHHHH
Confidence 99999999999999999886554444
No 45
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=3.6e-32 Score=326.21 Aligned_cols=355 Identities=13% Similarity=0.141 Sum_probs=230.3
Q ss_pred CCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccc
Q 004428 253 GGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGIL 332 (754)
Q Consensus 253 g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~ 332 (754)
++.. |||+|++++|.+++++|++.+|+|| +|||.||+||+|++++.....
T Consensus 29 ~~~~-~tpiQ~~Ai~~il~g~nvli~APTG---------SGKTlaa~Lpil~~l~~~~~~-------------------- 78 (876)
T PRK13767 29 KFGT-FTPPQRYAIPLIHEGKNVLISSPTG---------SGKTLAAFLAIIDELFRLGRE-------------------- 78 (876)
T ss_pred ccCC-CCHHHHHHHHHHHcCCCEEEECCCC---------CcHHHHHHHHHHHHHHhhccc--------------------
Confidence 5665 8999999999999999999999998 899999999999999853210
Q ss_pred cccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCC
Q 004428 333 IGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNS 412 (754)
Q Consensus 333 ~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~ 412 (754)
.. . -..+++|||+|||+||.|+...+.+...... ++....|..
T Consensus 79 --~~-~---~~~~~~LyIsPtraLa~di~~~L~~~l~~i~--------~~~~~~g~~----------------------- 121 (876)
T PRK13767 79 --GE-L---EDKVYCLYVSPLRALNNDIHRNLEEPLTEIR--------EIAKERGEE----------------------- 121 (876)
T ss_pred --cC-C---CCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH--------HHHHhcCCC-----------------------
Confidence 00 0 1257899999999999999988775421110 111111110
Q ss_pred CCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecch
Q 004428 413 QKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHAD 492 (754)
Q Consensus 413 ~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD 492 (754)
.|.--..+..|+.. ... ..++.. ..+||||+||.+|..++.. .+-...|+++.+|||||||
T Consensus 122 ---~~~i~v~v~~Gdt~--------~~~-r~~~l~--~~p~IlVtTPE~L~~ll~~-----~~~~~~l~~l~~VVIDE~H 182 (876)
T PRK13767 122 ---LPEIRVAIRTGDTS--------SYE-KQKMLK--KPPHILITTPESLAILLNS-----PKFREKLRTVKWVIVDEIH 182 (876)
T ss_pred ---cCCeeEEEEcCCCC--------HHH-HHHHHh--CCCCEEEecHHHHHHHhcC-----hhHHHHHhcCCEEEEechh
Confidence 01111234445321 111 112222 3689999999999988852 1112368999999999999
Q ss_pred hhhhcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCC-----CceEE
Q 004428 493 IILMQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANY-----QGKVK 566 (754)
Q Consensus 493 ~mLmQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~-----~G~Vk 566 (754)
.|+...+ .|+..+++.|..+- +.-.|.|+||||+++ +..+. .++... ...+.
T Consensus 183 ~l~~~~RG~~l~~~L~rL~~l~--------------------~~~~q~IglSATl~~-~~~va-~~L~~~~~~~~~r~~~ 240 (876)
T PRK13767 183 SLAENKRGVHLSLSLERLEELA--------------------GGEFVRIGLSATIEP-LEEVA-KFLVGYEDDGEPRDCE 240 (876)
T ss_pred hhccCccHHHHHHHHHHHHHhc--------------------CCCCeEEEEecccCC-HHHHH-HHhcCccccCCCCceE
Confidence 9985433 35555554443211 123799999999986 22222 222211 11122
Q ss_pred Eeec-ccCccc-ccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC---
Q 004428 567 LACE-YKGVLP-KVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ--- 641 (754)
Q Consensus 567 v~~~-~~g~i~-~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~--- 641 (754)
+... +...+. .+...+.+. +... ........+ ..+...+. ...++||||+|...+.++...|++.
T Consensus 241 iv~~~~~k~~~i~v~~p~~~l---~~~~-~~~~~~~l~----~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~ 310 (876)
T PRK13767 241 IVDARFVKPFDIKVISPVDDL---IHTP-AEEISEALY----ETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPE 310 (876)
T ss_pred EEccCCCccceEEEeccCccc---cccc-cchhHHHHH----HHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchh
Confidence 2111 000000 000000000 0000 000011111 12222222 2468999999999999999999873
Q ss_pred ---CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC---
Q 004428 642 ---NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH--- 715 (754)
Q Consensus 642 ---~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~--- 715 (754)
+..+...|+.+++.+|..+.+.|++|+++|||||+.+. +|+||++|++||+|+.|.++..|.||+||+||..
T Consensus 311 ~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le--~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~ 388 (876)
T PRK13767 311 EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLE--LGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEV 388 (876)
T ss_pred hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHH--hcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCC
Confidence 46799999999999999999999999999999999999 9999999999999999999999999999999763
Q ss_pred -CceEEEEechhcH
Q 004428 716 -NMTCTVLFSRFDM 728 (754)
Q Consensus 716 -~g~~~~L~sk~D~ 728 (754)
.|.+++ .++.|.
T Consensus 389 ~~g~ii~-~~~~~l 401 (876)
T PRK13767 389 SKGRIIV-VDRDDL 401 (876)
T ss_pred CcEEEEE-cCchhH
Confidence 244443 345553
No 46
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=5.7e-33 Score=299.18 Aligned_cols=298 Identities=17% Similarity=0.207 Sum_probs=206.5
Q ss_pred CceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceee
Q 004428 344 RPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQIL 423 (754)
Q Consensus 344 RPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~l 423 (754)
.|+++|+-|.||||.|+.+.|.++-.+... .+.|-.- +
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~n----p~~r~lL--------------------------------------m 323 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSN----PEVRSLL--------------------------------------M 323 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCC----hhhhhhh--------------------------------------h
Confidence 589999999999999999999887433310 0112111 2
Q ss_pred ccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCc-hHH
Q 004428 424 FGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNW-SWL 502 (754)
Q Consensus 424 F~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv 502 (754)
.+| + ..|.+.+... .+.||+|+||+||.+.|. .+...|+.+.+||+||||.+|-|.. +.+
T Consensus 324 igg---------v-~~r~Q~~ql~--~g~~ivvGtpgRl~~~is-------~g~~~lt~crFlvlDead~lL~qgy~d~I 384 (725)
T KOG0349|consen 324 IGG---------V-LKRTQCKQLK--DGTHIVVGTPGRLLQPIS-------KGLVTLTHCRFLVLDEADLLLGQGYDDKI 384 (725)
T ss_pred hhh---------H-HhHHHHHHhh--cCceeeecCchhhhhhhh-------ccceeeeeeEEEEecchhhhhhcccHHHH
Confidence 222 2 2233333332 689999999999999997 2456799999999999999997655 445
Q ss_pred HHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC-HHHHHHHHHhhcCCCceEEEeecc--cCcccc--
Q 004428 503 IEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN-PEINAFFNHHCANYQGKVKLACEY--KGVLPK-- 577 (754)
Q Consensus 503 ~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~-peinsL~~~~~~N~~G~Vkv~~~~--~g~i~~-- 577 (754)
.+.. +++|+- .-|| +.-|.++.|||+. -++..+..+.|+= +-+|.++.+- +..+..
T Consensus 385 ~r~h---~qip~~------------tsdg---~rlq~~vCsatlh~feVkk~~ervmhf-ptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 385 YRFH---GQIPHM------------TSDG---FRLQSPVCSATLHIFEVKKVGERVMHF-PTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred HHHh---ccchhh------------hcCC---cccccceeeeEEeEEEeeehhhhhccC-ceeEecccccccchhhccce
Confidence 5444 445542 1111 2258999999997 3566666666554 3466654321 001111
Q ss_pred --cccceeEE------EEEecc-----------CcccchhHHHHHHHHHHH-hHHhhhcCCCcEEEEecchhcHHHHHHH
Q 004428 578 --VLLNVRQI------YERFNA-----------DSIAKADDARLEYFTKKV-FPKIKDSIQGGIMLFLSSYFEFVRLRNF 637 (754)
Q Consensus 578 --v~~~I~Q~------f~r~~~-----------~s~~~~~d~Rf~yF~~~i-Lp~l~~~~~~~tLIFv~Sy~d~vrlrn~ 637 (754)
+.+++--. |++.+. .|+. .+..+.+.|...- +-.+++..+.++||||+++.|++.|+.+
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe-~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~ 524 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPE-NPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERM 524 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCC-ChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHH
Confidence 11111111 111110 0111 1122332221111 1124456789999999999999999999
Q ss_pred HHhC---CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCC
Q 004428 638 LKSQ---NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGS 714 (754)
Q Consensus 638 Lk~~---~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra 714 (754)
|... .++++++|++..+.+|...+..|+.+.+++||+||+|+ ||+||-|+..+||.-||+...-|+|||||.||+
T Consensus 525 ~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaa--rgldi~g~p~~invtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 525 MNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAA--RGLDITGLPFMINVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred HHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhh--ccccccCCceEEEEecCcccchhhhhhhccchh
Confidence 9875 47999999999999999999999999999999999999 999999999999999999999999999999998
Q ss_pred C-CceEEEEec
Q 004428 715 H-NMTCTVLFS 724 (754)
Q Consensus 715 ~-~g~~~~L~s 724 (754)
. -|.+++|+.
T Consensus 603 ermglaislva 613 (725)
T KOG0349|consen 603 ERMGLAISLVA 613 (725)
T ss_pred hhcceeEEEee
Confidence 7 478888874
No 47
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.4e-31 Score=308.22 Aligned_cols=334 Identities=13% Similarity=0.096 Sum_probs=234.5
Q ss_pred HHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhh
Q 004428 240 KLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTK 319 (754)
Q Consensus 240 ~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~k 319 (754)
...+.+++. -|+.. ++|+|+++|+.+++++|++.+++|| +|||.+|.||+|.+
T Consensus 12 ~~~~~l~~~---fG~~~-~r~~Q~~ai~~il~g~dvlv~apTG---------sGKTl~y~lpal~~-------------- 64 (607)
T PRK11057 12 LAKQVLQET---FGYQQ-FRPGQQEIIDAVLSGRDCLVVMPTG---------GGKSLCYQIPALVL-------------- 64 (607)
T ss_pred HHHHHHHHH---cCCCC-CCHHHHHHHHHHHcCCCEEEEcCCC---------chHHHHHHHHHHHc--------------
Confidence 334444444 38865 7999999999999999999999998 89999999999831
Q ss_pred hhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccch
Q 004428 320 VAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDD 399 (754)
Q Consensus 320 l~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~ 399 (754)
. ..+|||+||++|+.|.++.+..+.-... .+.+...
T Consensus 65 --------------------~----g~tlVisPl~sL~~dqv~~l~~~gi~~~------------~~~s~~~-------- 100 (607)
T PRK11057 65 --------------------D----GLTLVVSPLISLMKDQVDQLLANGVAAA------------CLNSTQT-------- 100 (607)
T ss_pred --------------------C----CCEEEEecHHHHHHHHHHHHHHcCCcEE------------EEcCCCC--------
Confidence 1 2479999999999999999887632110 0111000
Q ss_pred hhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHH--HHhhhhcccccCc
Q 004428 400 ASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQ--KMTKAEENKEQDV 477 (754)
Q Consensus 400 ~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~--lI~~~e~~k~rd~ 477 (754)
+.. ....+.... ....+|+++||.+|.. +++ .
T Consensus 101 -----------------~~~-------------------~~~~~~~~~-~g~~~il~~tPe~l~~~~~~~---------~ 134 (607)
T PRK11057 101 -----------------REQ-------------------QLEVMAGCR-TGQIKLLYIAPERLMMDNFLE---------H 134 (607)
T ss_pred -----------------HHH-------------------HHHHHHHHh-CCCCcEEEEChHHhcChHHHH---------H
Confidence 000 000011011 1357899999999873 222 1
Q ss_pred ccCCceeEEEEecchhhhhcCchH-----HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHH
Q 004428 478 DYLSSIEVLIIDHADIILMQNWSW-----LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINA 552 (754)
Q Consensus 478 dfLSSIEiLVlDeAD~mLmQNw~h-----v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peins 552 (754)
.....+.++||||||.|+. |.| +..|-......| ..|+++||||.++....
T Consensus 135 l~~~~l~~iVIDEaH~i~~--~G~~fr~~y~~L~~l~~~~p----------------------~~~~v~lTAT~~~~~~~ 190 (607)
T PRK11057 135 LAHWNPALLAVDEAHCISQ--WGHDFRPEYAALGQLRQRFP----------------------TLPFMALTATADDTTRQ 190 (607)
T ss_pred HhhCCCCEEEEeCcccccc--ccCcccHHHHHHHHHHHhCC----------------------CCcEEEEecCCChhHHH
Confidence 2245789999999999873 543 122211111122 26899999999998765
Q ss_pred HHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHH
Q 004428 553 FFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFV 632 (754)
Q Consensus 553 L~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~v 632 (754)
-+...+.-..-.+.+.. .. .+++. |..+... .... .++..+.......+||||+|..++.
T Consensus 191 di~~~l~l~~~~~~~~~-----~~--r~nl~--~~v~~~~-------~~~~----~l~~~l~~~~~~~~IIFc~tr~~~e 250 (607)
T PRK11057 191 DIVRLLGLNDPLIQISS-----FD--RPNIR--YTLVEKF-------KPLD----QLMRYVQEQRGKSGIIYCNSRAKVE 250 (607)
T ss_pred HHHHHhCCCCeEEEECC-----CC--CCcce--eeeeecc-------chHH----HHHHHHHhcCCCCEEEEECcHHHHH
Confidence 43333321111122211 11 11221 1111111 1111 2333333445678999999999999
Q ss_pred HHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccC
Q 004428 633 RLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLE 712 (754)
Q Consensus 633 rlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ 712 (754)
.|...|++.++++..+|+.+++.+|.++...|..|+++|||+|+.+. +|+||++|++||+|++|.+++-|.|++||+|
T Consensus 251 ~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~--~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaG 328 (607)
T PRK11057 251 DTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFG--MGINKPNVRFVVHFDIPRNIESYYQETGRAG 328 (607)
T ss_pred HHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhh--ccCCCCCcCEEEEeCCCCCHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999988 9999999999999999999999999999999
Q ss_pred CCC-CceEEEEechhcHHHHHHHhC
Q 004428 713 GSH-NMTCTVLFSRFDMLRLERIVG 736 (754)
Q Consensus 713 ra~-~g~~~~L~sk~D~~~LErIVG 736 (754)
|.+ .|.|+.||+..|...+.+++-
T Consensus 329 R~G~~~~~ill~~~~d~~~~~~~~~ 353 (607)
T PRK11057 329 RDGLPAEAMLFYDPADMAWLRRCLE 353 (607)
T ss_pred CCCCCceEEEEeCHHHHHHHHHHHh
Confidence 988 688999999999877766653
No 48
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=9.8e-32 Score=328.72 Aligned_cols=317 Identities=11% Similarity=0.139 Sum_probs=210.3
Q ss_pred HHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhh
Q 004428 243 KHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAK 322 (754)
Q Consensus 243 ~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~ 322 (754)
+.+.+.+++..+.. |||+|+.++|.++.|+|++++++|| +|||. |+++++.++..
T Consensus 65 ~~f~~~f~~~~g~~-p~~iQ~~~i~~il~G~d~vi~ApTG---------sGKT~-f~l~~~~~l~~-------------- 119 (1171)
T TIGR01054 65 KEFEEFFKKAVGSE-PWSIQKMWAKRVLRGDSFAIIAPTG---------VGKTT-FGLAMSLFLAK-------------- 119 (1171)
T ss_pred HHHHHHHHHhcCCC-CcHHHHHHHHHHhCCCeEEEECCCC---------CCHHH-HHHHHHHHHHh--------------
Confidence 34444444434444 8999999999999999999999998 89996 88888766531
Q ss_pred hccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhh
Q 004428 323 NKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQ 402 (754)
Q Consensus 323 ~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~ 402 (754)
+ .++||||+|||+||.|+.+.+.+++.... +.+ ......+|+
T Consensus 120 -----------------~---g~~vLIL~PTreLa~Qi~~~l~~l~~~~~-i~~---~~i~~~~Gg-------------- 161 (1171)
T TIGR01054 120 -----------------K---GKRCYIILPTTLLVIQVAEKISSLAEKAG-VGT---VNIGAYHSR-------------- 161 (1171)
T ss_pred -----------------c---CCeEEEEeCHHHHHHHHHHHHHHHHHhcC-Cce---eeeeeecCC--------------
Confidence 1 37899999999999999999999875321 000 000011222
Q ss_pred cccccccCCCCCCCCCCceeeccCCCCCcccccccccH--HHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccC
Q 004428 403 NIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTR--KSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYL 480 (754)
Q Consensus 403 ~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~tr--k~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfL 480 (754)
+.... ..++.... .++|||||||++|...+.. |
T Consensus 162 ---------------------------------~~~~e~~~~~~~l~~-~~~dIlV~Tp~rL~~~~~~-----------l 196 (1171)
T TIGR01054 162 ---------------------------------LPTKEKKEFMERIEN-GDFDILITTTMFLSKNYDE-----------L 196 (1171)
T ss_pred ---------------------------------CCHHHHHHHHHHHhc-CCCCEEEECHHHHHHHHHH-----------h
Confidence 22211 12222221 3589999999999988752 2
Q ss_pred C-ceeEEEEecchhhh------------hcCch-HHHHHHHHhccCCCCCCCCchhhhhhh--hcccCCCccccE--EEE
Q 004428 481 S-SIEVLIIDHADIIL------------MQNWS-WLIEVVEQLNRIPSKQHGTDVMRIRQW--YLDGYSRFYRQT--VLL 542 (754)
Q Consensus 481 S-SIEiLVlDeAD~mL------------mQNw~-hv~~Il~~Ln~~Pk~~h~~DfsRvR~w--~L~~~ak~~RQT--llF 542 (754)
. .+.++||||||+|| |++.+ .+..|++.++..-+ .-+...++.+ .+.. .+..||+ ++|
T Consensus 197 ~~~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~q~~li~~ 272 (1171)
T TIGR01054 197 GPKFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLK---LYRALHAKKRLELLEA-IPGKKRGCLIVS 272 (1171)
T ss_pred cCCCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccc---cchHHHHHHHHHHHHh-hhhccCcEEEEE
Confidence 2 89999999999998 45554 36666655432100 0000011110 0110 1123664 569
Q ss_pred cCCC-CHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcE
Q 004428 543 SYHP-NPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGI 621 (754)
Q Consensus 543 SAt~-~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~t 621 (754)
|||. +..+.. .++++.- .+.+... .....+|.|.|...+. +.. .++ .+.+....++
T Consensus 273 SAT~~p~~~~~---~l~r~ll-~~~v~~~-----~~~~r~I~~~~~~~~~---------~~~----~L~-~ll~~l~~~~ 329 (1171)
T TIGR01054 273 SATGRPRGKRA---KLFRELL-GFEVGGG-----SDTLRNVVDVYVEDED---------LKE----TLL-EIVKKLGTGG 329 (1171)
T ss_pred eCCCCccccHH---HHccccc-ceEecCc-----cccccceEEEEEeccc---------HHH----HHH-HHHHHcCCCE
Confidence 9995 444432 2334432 2333221 1245678888764321 111 121 2222224689
Q ss_pred EEEecch---hcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEE----cccccccCccccCC-CCeEE
Q 004428 622 MLFLSSY---FEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILY----TERSHFYHRYKIRG-IQNLI 693 (754)
Q Consensus 622 LIFv~Sy---~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~----TErahffRr~dIkg-V~~VI 693 (754)
||||++. ..+.+|.++|++.|+++..+|+.+++ +++..|++|+++|||+ ||+++ ||+||++ |++||
T Consensus 330 IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~a--RGIDip~~V~~vI 403 (1171)
T TIGR01054 330 IVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLV--RGLDLPERVRYAV 403 (1171)
T ss_pred EEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCccc--ccCCCCccccEEE
Confidence 9999999 99999999999999999999999974 6899999999999999 59999 9999999 89999
Q ss_pred EccCCCC
Q 004428 694 IYSLPER 700 (754)
Q Consensus 694 fY~lP~~ 700 (754)
|||+|.+
T Consensus 404 ~~~~P~~ 410 (1171)
T TIGR01054 404 FLGVPKF 410 (1171)
T ss_pred EECCCCE
Confidence 9999976
No 49
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.7e-31 Score=313.19 Aligned_cols=313 Identities=18% Similarity=0.179 Sum_probs=229.1
Q ss_pred HHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccC
Q 004428 261 KQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDR 340 (754)
Q Consensus 261 iQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQ 340 (754)
+-.+++..+.+.++|+.+++|| +|||.+|.+++|+++.
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TG---------SGKTT~vpl~lL~~~~--------------------------------- 43 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPG---------AGKSTAVPLALLDAPG--------------------------------- 43 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCC---------CCHHHHHHHHHHHhhc---------------------------------
Confidence 3456677778899999999998 8999999999998762
Q ss_pred CCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCc
Q 004428 341 GFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDY 420 (754)
Q Consensus 341 GftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~ 420 (754)
..++|||+.|||++|.|+.+.+.+.....-.. ..| |
T Consensus 44 --~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~----------~VG--------------------------------y 79 (819)
T TIGR01970 44 --IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ----------TVG--------------------------------Y 79 (819)
T ss_pred --cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc----------EEE--------------------------------E
Confidence 02479999999999999999886543211000 001 0
Q ss_pred eeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecch-hhhhcCc
Q 004428 421 QILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHAD-IILMQNW 499 (754)
Q Consensus 421 ~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD-~mLmQNw 499 (754)
.+.+.. .+ + .+.+|+|+|||+|...+.. +. .|+.+.++|||||| +++...+
T Consensus 80 --------------~vr~~~-~~---s--~~t~I~v~T~G~Llr~l~~-------d~-~L~~v~~VIiDEaHER~L~~Dl 131 (819)
T TIGR01970 80 --------------RVRGEN-KV---S--RRTRLEVVTEGILTRMIQD-------DP-ELDGVGALIFDEFHERSLDADL 131 (819)
T ss_pred --------------EEcccc-cc---C--CCCcEEEECCcHHHHHHhh-------Cc-ccccCCEEEEeccchhhhccch
Confidence 011111 00 1 2478999999999998862 23 59999999999999 5774322
Q ss_pred --hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccc
Q 004428 500 --SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPK 577 (754)
Q Consensus 500 --~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~ 577 (754)
..+..|... ++.+ .|+|+||||++.+. +.+++.+.+ .|.+. |.
T Consensus 132 ~L~ll~~i~~~---lr~d---------------------lqlIlmSATl~~~~---l~~~l~~~~-vI~~~----gr--- 176 (819)
T TIGR01970 132 GLALALDVQSS---LRED---------------------LKILAMSATLDGER---LSSLLPDAP-VVESE----GR--- 176 (819)
T ss_pred HHHHHHHHHHh---cCCC---------------------ceEEEEeCCCCHHH---HHHHcCCCc-EEEec----Cc---
Confidence 122333332 2332 79999999999764 456766643 33321 21
Q ss_pred cccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHh---CCCceEeecCCCCH
Q 004428 578 VLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKS---QNASFCLLGDYTEP 654 (754)
Q Consensus 578 v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~---~~~~f~~Ihey~sq 654 (754)
...|++.|...... .++.-.+...+-.+.....+.+|||+|+..+..++.+.|++ .++.+..+|+.+++
T Consensus 177 -~~pVe~~y~~~~~~-------~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~ 248 (819)
T TIGR01970 177 -SFPVEIRYLPLRGD-------QRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSL 248 (819)
T ss_pred -ceeeeeEEeecchh-------hhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCH
Confidence 22477777654321 12211111223333333468899999999999999999987 48999999999999
Q ss_pred HHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCc------------------hhhhccccCCCCC
Q 004428 655 SDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEF------------------YPEIVNMLEGSHN 716 (754)
Q Consensus 655 ~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pef------------------Y~erigrt~ra~~ 716 (754)
.++.++...|.+|+.+|||+|++|. ||++|+||++||+|++|..+.| |.||+||+||...
T Consensus 249 ~eq~~~~~~~~~G~rkVlVATnIAE--rgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~ 326 (819)
T TIGR01970 249 AAQDRAIKPDPQGRRKVVLATNIAE--TSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEP 326 (819)
T ss_pred HHHHHHHhhcccCCeEEEEecchHh--hcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCC
Confidence 9999999999999999999999999 9999999999999999987655 8899999999989
Q ss_pred ceEEEEechhcHHHHH
Q 004428 717 MTCTVLFSRFDMLRLE 732 (754)
Q Consensus 717 g~~~~L~sk~D~~~LE 732 (754)
|.|+.|||+.+...|.
T Consensus 327 G~cyrL~t~~~~~~l~ 342 (819)
T TIGR01970 327 GVCYRLWSEEQHQRLP 342 (819)
T ss_pred CEEEEeCCHHHHHhhh
Confidence 9999999998876653
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.1e-31 Score=323.58 Aligned_cols=314 Identities=14% Similarity=0.113 Sum_probs=225.2
Q ss_pred CCHHHHHHhhhhhCC------ccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 258 HSSKQRSFFSLCNSY------RDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y------~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
|||+|+++||.++++ .|+|.|+.|| +|||.+|++.+...+.
T Consensus 601 ~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TG---------sGKT~val~aa~~~~~------------------------ 647 (1147)
T PRK10689 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVG---------FGKTEVAMRAAFLAVE------------------------ 647 (1147)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEcCCC---------cCHHHHHHHHHHHHHH------------------------
Confidence 799999999999987 8999999998 8999999888865432
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
. .++||||+|||+||.|+++.+.+...... + +.....|+.
T Consensus 648 --------~---g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~-v------~i~~l~g~~---------------------- 687 (1147)
T PRK10689 648 --------N---HKQVAVLVPTTLLAQQHYDNFRDRFANWP-V------RIEMLSRFR---------------------- 687 (1147)
T ss_pred --------c---CCeEEEEeCcHHHHHHHHHHHHHhhccCC-c------eEEEEECCC----------------------
Confidence 1 36799999999999999999997643211 1 111111111
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
+.+-.++.++-... ..+||||+||..| . .+. .+..+.+||||||
T Consensus 688 -----------------------s~~e~~~il~~l~~-g~~dIVVgTp~lL----~-------~~v-~~~~L~lLVIDEa 731 (1147)
T PRK10689 688 -----------------------SAKEQTQILAEAAE-GKIDILIGTHKLL----Q-------SDV-KWKDLGLLIVDEE 731 (1147)
T ss_pred -----------------------CHHHHHHHHHHHHh-CCCCEEEECHHHH----h-------CCC-CHhhCCEEEEech
Confidence 01111122221111 3589999999532 2 122 3678999999999
Q ss_pred hhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecc
Q 004428 492 DIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEY 571 (754)
Q Consensus 492 D~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~ 571 (754)
|+|- ..+. .. +..+|.+ +|+|+||||..|....+....+.++. .|.. ++
T Consensus 732 hrfG---~~~~-e~---lk~l~~~---------------------~qvLl~SATpiprtl~l~~~gl~d~~-~I~~-~p- 780 (1147)
T PRK10689 732 HRFG---VRHK-ER---IKAMRAD---------------------VDILTLTATPIPRTLNMAMSGMRDLS-IIAT-PP- 780 (1147)
T ss_pred hhcc---hhHH-HH---HHhcCCC---------------------CcEEEEcCCCCHHHHHHHHhhCCCcE-EEec-CC-
Confidence 9973 2332 22 2233433 89999999999998877776666642 2322 11
Q ss_pred cCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC--CCceEeec
Q 004428 572 KGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ--NASFCLLG 649 (754)
Q Consensus 572 ~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~--~~~f~~Ih 649 (754)
.+ ...|++++..++.. ..| ..++..+. ..++++||||+.....++.+.|++. ++.+..+|
T Consensus 781 ~~-----r~~v~~~~~~~~~~------~~k-----~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lH 842 (1147)
T PRK10689 781 AR-----RLAVKTFVREYDSL------VVR-----EAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 842 (1147)
T ss_pred CC-----CCCceEEEEecCcH------HHH-----HHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEe
Confidence 11 12355555443210 111 13444443 2478999999999999999999987 88999999
Q ss_pred CCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEE-----EccCCCCCCchhhhccccCCCC-CceEEEEe
Q 004428 650 DYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI-----IYSLPERKEFYPEIVNMLEGSH-NMTCTVLF 723 (754)
Q Consensus 650 ey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI-----fY~lP~~pefY~erigrt~ra~-~g~~~~L~ 723 (754)
|.|++.+|.+++..|++|+++|||||+++. ||+||++|++|| +|++|. |.||+||+||.+ .|.|+.++
T Consensus 843 G~m~q~eRe~im~~Fr~Gk~~VLVaTdIie--rGIDIP~v~~VIi~~ad~fglaq----~~Qr~GRvGR~g~~g~a~ll~ 916 (1147)
T PRK10689 843 GQMRERELERVMNDFHHQRFNVLVCTTIIE--TGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLT 916 (1147)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEECchhh--cccccccCCEEEEecCCCCCHHH----HHHHhhccCCCCCceEEEEEe
Confidence 999999999999999999999999999999 999999999999 888885 899999999987 68899877
Q ss_pred ch------hcHHHHHHHh
Q 004428 724 SR------FDMLRLERIV 735 (754)
Q Consensus 724 sk------~D~~~LErIV 735 (754)
.. ....+|+.|.
T Consensus 917 ~~~~~~~~~~~~rl~~~~ 934 (1147)
T PRK10689 917 PHPKAMTTDAQKRLEAIA 934 (1147)
T ss_pred CCCcccCHHHHHHHHHHH
Confidence 43 2356666554
No 51
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.2e-31 Score=331.98 Aligned_cols=363 Identities=11% Similarity=0.110 Sum_probs=240.6
Q ss_pred HHHHHhhh-CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhh
Q 004428 244 HWLDIYNK-SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAK 322 (754)
Q Consensus 244 ~~~~~~~~-~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~ 322 (754)
.|.+.+++ .|+ . |||+|+.++|.+++++|+++.++|| +|||..+.++++.+..
T Consensus 67 ~~~~~f~~~~G~-~-pt~iQ~~~i~~il~G~d~li~APTG---------sGKTl~~~~~al~~~~--------------- 120 (1638)
T PRK14701 67 EFEEFFEKITGF-E-FWSIQKTWAKRILRGKSFSIVAPTG---------MGKSTFGAFIALFLAL--------------- 120 (1638)
T ss_pred HHHHHHHHhhCC-C-CCHHHHHHHHHHHcCCCEEEEEcCC---------CCHHHHHHHHHHHHHh---------------
Confidence 33344433 687 4 8999999999999999999999998 8999966666665421
Q ss_pred hccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhh
Q 004428 323 NKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQ 402 (754)
Q Consensus 323 ~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~ 402 (754)
+ .+++|||+|||+||.|+++.|..++.... + ..+....+|+
T Consensus 121 -----------------~---g~~aLVl~PTreLa~Qi~~~l~~l~~~~~-~----~v~v~~~~g~-------------- 161 (1638)
T PRK14701 121 -----------------K---GKKCYIILPTTLLVKQTVEKIESFCEKAN-L----DVRLVYYHSN-------------- 161 (1638)
T ss_pred -----------------c---CCeEEEEECHHHHHHHHHHHHHHHHhhcC-C----ceeEEEEeCC--------------
Confidence 1 25899999999999999999999865321 0 0011111121
Q ss_pred cccccccCCCCCCCCCCceeeccCCCCCcccccccccHH--HHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccC
Q 004428 403 NIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRK--SIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYL 480 (754)
Q Consensus 403 ~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk--~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfL 480 (754)
++...+ .++.... ..+|||||||++|...+.. .. .
T Consensus 162 ---------------------------------~s~~e~~~~~~~l~~-g~~dILV~TPgrL~~~~~~--------l~-~ 198 (1638)
T PRK14701 162 ---------------------------------LRKKEKEEFLERIEN-GDFDILVTTAQFLARNFPE--------MK-H 198 (1638)
T ss_pred ---------------------------------CCHHHHHHHHHHHhc-CCCCEEEECCchhHHhHHH--------Hh-h
Confidence 222221 1221111 2489999999999987752 11 2
Q ss_pred CceeEEEEecchhhh------------hcCchHHH-HHHHHhccCCCCCCC---CchhhhhhhhcccCCCcccc-EEEEc
Q 004428 481 SSIEVLIIDHADIIL------------MQNWSWLI-EVVEQLNRIPSKQHG---TDVMRIRQWYLDGYSRFYRQ-TVLLS 543 (754)
Q Consensus 481 SSIEiLVlDeAD~mL------------mQNw~hv~-~Il~~Ln~~Pk~~h~---~DfsRvR~w~L~~~ak~~RQ-TllFS 543 (754)
..|.++||||||.|| |++.+.+. .+++.+++.+..... ..+.+++.-.. ..+..+| +|+||
T Consensus 199 ~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~ll~~S 276 (1638)
T PRK14701 199 LKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIE--KIGNKIGCLIVAS 276 (1638)
T ss_pred CCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhh--hcCCCccEEEEEe
Confidence 679999999999997 35555444 344444332221000 01122222110 1122356 67899
Q ss_pred CCCCH--HHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcE
Q 004428 544 YHPNP--EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGI 621 (754)
Q Consensus 544 At~~p--einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~t 621 (754)
||+++ .+..++ +++- .+.+... .....+|.|.|..++.. .+ .. +..++. . ...++
T Consensus 277 AT~~~r~~~~~l~----~~~l-~f~v~~~-----~~~lr~i~~~yi~~~~~-------~k-~~-L~~ll~---~-~g~~g 333 (1638)
T PRK14701 277 ATGKAKGDRVKLY----RELL-GFEVGSG-----RSALRNIVDVYLNPEKI-------IK-EH-VRELLK---K-LGKGG 333 (1638)
T ss_pred cCCCchhHHHHHh----hcCe-EEEecCC-----CCCCCCcEEEEEECCHH-------HH-HH-HHHHHH---h-CCCCe
Confidence 99997 354444 3432 2333221 12456788888764321 11 11 112222 2 24689
Q ss_pred EEEecchhcH---HHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc----ccccccCccccCC-CCeEE
Q 004428 622 MLFLSSYFEF---VRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT----ERSHFYHRYKIRG-IQNLI 693 (754)
Q Consensus 622 LIFv~Sy~d~---vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T----ErahffRr~dIkg-V~~VI 693 (754)
||||++.... .+|.++|.+.|+++..+|+. |.+++..|++|+++|||+| |+++ ||+||++ |++||
T Consensus 334 IVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaa--RGIDiP~~Vryvi 406 (1638)
T PRK14701 334 LIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLV--RGLDLPERIRFAV 406 (1638)
T ss_pred EEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeE--ecCccCCccCEEE
Confidence 9999998864 79999999999999999994 8899999999999999999 5899 9999999 99999
Q ss_pred EccCCC---CCCchhhhc-------------cccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhhc
Q 004428 694 IYSLPE---RKEFYPEIV-------------NMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVKS 746 (754)
Q Consensus 694 fY~lP~---~pefY~eri-------------grt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~s 746 (754)
|||+|. +.+.|.+-. |+.+|.+ ..-+...+...|...|.+++..+..-+-+..
T Consensus 407 ~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 476 (1638)
T PRK14701 407 FYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILKDEEVIKKVAE 476 (1638)
T ss_pred EeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhccHHHHHHhhc
Confidence 999999 888666544 5555544 2334456778888888888888776665553
No 52
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.98 E-value=7.3e-31 Score=314.57 Aligned_cols=331 Identities=14% Similarity=0.138 Sum_probs=230.2
Q ss_pred HHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCC------ccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCc
Q 004428 239 PKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSY------RDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDL 312 (754)
Q Consensus 239 ~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y------~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~ 312 (754)
..+.+.+.+. -+| . |||+|+.+|+.+.+. .|++.|++|| +|||.+|++++++.+..
T Consensus 438 ~~~~~~~~~~---~~f-~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTG---------sGKT~val~a~l~al~~---- 499 (926)
T TIGR00580 438 LEWQQEFEDS---FPF-E-ETPDQLKAIEEIKADMESPRPMDRLVCGDVG---------FGKTEVAMRAAFKAVLD---- 499 (926)
T ss_pred HHHHHHHHHh---CCC-C-CCHHHHHHHHHHHhhhcccCcCCEEEECCCC---------ccHHHHHHHHHHHHHHh----
Confidence 3444444443 255 3 799999999999885 7999999998 89999999999987741
Q ss_pred cccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccc
Q 004428 313 VTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEE 392 (754)
Q Consensus 313 V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~ 392 (754)
| ++||||+||++||.|+++.+.++..... +.+. ...|...
T Consensus 500 ----------------------------g---~qvlvLvPT~~LA~Q~~~~f~~~~~~~~-i~v~------~Lsg~~~-- 539 (926)
T TIGR00580 500 ----------------------------G---KQVAVLVPTTLLAQQHFETFKERFANFP-VTIE------LLSRFRS-- 539 (926)
T ss_pred ----------------------------C---CeEEEEeCcHHHHHHHHHHHHHHhccCC-cEEE------EEecccc--
Confidence 2 5799999999999999999998754321 1111 1111110
Q ss_pred cCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcc
Q 004428 393 EDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEEN 472 (754)
Q Consensus 393 ~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~ 472 (754)
.+-.++.++-... ..+||||+|| + ++.
T Consensus 540 -------------------------------------------~~e~~~~~~~l~~-g~~dIVIGTp-~---ll~----- 566 (926)
T TIGR00580 540 -------------------------------------------AKEQNEILKELAS-GKIDILIGTH-K---LLQ----- 566 (926)
T ss_pred -------------------------------------------HHHHHHHHHHHHc-CCceEEEchH-H---Hhh-----
Confidence 0001122222221 3589999999 3 333
Q ss_pred cccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHH
Q 004428 473 KEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINA 552 (754)
Q Consensus 473 k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peins 552 (754)
++ ..+..+.+|||||||++-...+ .. |..++. ..|+|+||||..|....
T Consensus 567 --~~-v~f~~L~llVIDEahrfgv~~~----~~---L~~~~~---------------------~~~vL~~SATpiprtl~ 615 (926)
T TIGR00580 567 --KD-VKFKDLGLLIIDEEQRFGVKQK----EK---LKELRT---------------------SVDVLTLSATPIPRTLH 615 (926)
T ss_pred --CC-CCcccCCEEEeecccccchhHH----HH---HHhcCC---------------------CCCEEEEecCCCHHHHH
Confidence 12 3578999999999999643222 22 222333 27999999999987665
Q ss_pred HHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHH
Q 004428 553 FFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFV 632 (754)
Q Consensus 553 L~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~v 632 (754)
+....+.++. .|...+ .+ ...|++.+...+ +.. ....++..+. ..++++||||+.....
T Consensus 616 ~~l~g~~d~s-~I~~~p--~~-----R~~V~t~v~~~~--------~~~---i~~~i~~el~--~g~qv~if~n~i~~~e 674 (926)
T TIGR00580 616 MSMSGIRDLS-IIATPP--ED-----RLPVRTFVMEYD--------PEL---VREAIRRELL--RGGQVFYVHNRIESIE 674 (926)
T ss_pred HHHhcCCCcE-EEecCC--CC-----ccceEEEEEecC--------HHH---HHHHHHHHHH--cCCeEEEEECCcHHHH
Confidence 5544444431 222111 11 123555443321 111 1112333333 3578999999999999
Q ss_pred HHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCC-CCchhhhcc
Q 004428 633 RLRNFLKSQ--NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPER-KEFYPEIVN 709 (754)
Q Consensus 633 rlrn~Lk~~--~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~-pefY~erig 709 (754)
++.+.|++. +++++.+||.+++.+|.+++..|++|+++|||+|+++. ||+||++|++||+|+.|.. ...|.||+|
T Consensus 675 ~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie--~GIDIp~v~~VIi~~a~~~gls~l~Qr~G 752 (926)
T TIGR00580 675 KLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIE--TGIDIPNANTIIIERADKFGLAQLYQLRG 752 (926)
T ss_pred HHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhh--cccccccCCEEEEecCCCCCHHHHHHHhc
Confidence 999999985 89999999999999999999999999999999999999 9999999999999999864 235779999
Q ss_pred ccCCCC-CceEEEEech------hcHHHHHHH
Q 004428 710 MLEGSH-NMTCTVLFSR------FDMLRLERI 734 (754)
Q Consensus 710 rt~ra~-~g~~~~L~sk------~D~~~LErI 734 (754)
|+||++ .|.|+.|+.. ....+|+.|
T Consensus 753 RvGR~g~~g~aill~~~~~~l~~~~~~RL~~~ 784 (926)
T TIGR00580 753 RVGRSKKKAYAYLLYPHQKALTEDAQKRLEAI 784 (926)
T ss_pred CCCCCCCCeEEEEEECCcccCCHHHHHHHHHH
Confidence 999988 7999999854 334566555
No 53
>PRK02362 ski2-like helicase; Provisional
Probab=99.98 E-value=6.2e-31 Score=310.73 Aligned_cols=341 Identities=16% Similarity=0.140 Sum_probs=239.7
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhh-hhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSL-CNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~-i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
+.|++++|++.+++.|.+. |+.. ++|+|.++|+. +++++|++++++|| +|||.+|.|++|+++.+
T Consensus 1 ~~~~~l~lp~~~~~~l~~~----g~~~-l~p~Q~~ai~~~~~~g~nvlv~APTG---------SGKTlia~lail~~l~~ 66 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAE----GIEE-LYPPQAEAVEAGLLDGKNLLAAIPTA---------SGKTLIAELAMLKAIAR 66 (737)
T ss_pred CChhhcCCCHHHHHHHHhC----CCCc-CCHHHHHHHHHHHhCCCcEEEECCCc---------chHHHHHHHHHHHHHhc
Confidence 3588999999999998774 7776 79999999998 78999999999998 89999999999999941
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
..|+|||+|||+||.|+++.+.++.+.. + +.. .+
T Consensus 67 -----------------------------------~~kal~i~P~raLa~q~~~~~~~~~~~g--~------~v~-~~-- 100 (737)
T PRK02362 67 -----------------------------------GGKALYIVPLRALASEKFEEFERFEELG--V------RVG-IS-- 100 (737)
T ss_pred -----------------------------------CCcEEEEeChHHHHHHHHHHHHHhhcCC--C------EEE-EE--
Confidence 2479999999999999999998875321 1 111 11
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
.|+.+ ...+. ...+|||||||.++..++.+
T Consensus 101 ------------------------------------tGd~~--------~~~~~------l~~~~IiV~Tpek~~~llr~ 130 (737)
T PRK02362 101 ------------------------------------TGDYD--------SRDEW------LGDNDIIVATSEKVDSLLRN 130 (737)
T ss_pred ------------------------------------eCCcC--------ccccc------cCCCCEEEECHHHHHHHHhc
Confidence 12110 00001 13579999999999998862
Q ss_pred hhcccccCcccCCceeEEEEecchhhhhcC-chHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILMQN-WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLmQN-w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
...+|..|.++||||||.|...+ ...++.++..+..++. ..|.+++|||++
T Consensus 131 -------~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~---------------------~~qii~lSATl~ 182 (737)
T PRK02362 131 -------GAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNP---------------------DLQVVALSATIG 182 (737)
T ss_pred -------ChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCC---------------------CCcEEEEcccCC
Confidence 23578999999999999998544 4556666665544332 279999999996
Q ss_pred HHHHHHHHHhhcC------C-CceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCc
Q 004428 548 PEINAFFNHHCAN------Y-QGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGG 620 (754)
Q Consensus 548 peinsL~~~~~~N------~-~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~ 620 (754)
. ...+. .++.. + +..++....+.+. +...-.+. .+.... .+..++ .++..+. ..++
T Consensus 183 n-~~~la-~wl~~~~~~~~~rpv~l~~~v~~~~~---~~~~~~~~--~~~~~~----~~~~~~----~~~~~~~--~~~~ 245 (737)
T PRK02362 183 N-ADELA-DWLDAELVDSEWRPIDLREGVFYGGA---IHFDDSQR--EVEVPS----KDDTLN----LVLDTLE--EGGQ 245 (737)
T ss_pred C-HHHHH-HHhCCCcccCCCCCCCCeeeEecCCe---eccccccc--cCCCcc----chHHHH----HHHHHHH--cCCC
Confidence 3 22332 22211 0 0000000000000 00000000 011100 011111 1222222 4578
Q ss_pred EEEEecchhcHHHHHHHHHhCC------------------------------------CceEeecCCCCHHHHHHHHHHH
Q 004428 621 IMLFLSSYFEFVRLRNFLKSQN------------------------------------ASFCLLGDYTEPSDISRARVWF 664 (754)
Q Consensus 621 tLIFv~Sy~d~vrlrn~Lk~~~------------------------------------~~f~~Ihey~sq~~r~rar~~F 664 (754)
+||||+|..++..+...|.... ..++..|+.+++.+|......|
T Consensus 246 ~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~F 325 (737)
T PRK02362 246 CLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAF 325 (737)
T ss_pred eEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHH
Confidence 9999999999999888886431 2467789999999999999999
Q ss_pred hcCCccEEEEcccccccCccccCCCCeEEE----cc-----CCCCCCchhhhccccCCCC---CceEEEEechhc
Q 004428 665 FEGKRKMILYTERSHFYHRYKIRGIQNLII----YS-----LPERKEFYPEIVNMLEGSH---NMTCTVLFSRFD 727 (754)
Q Consensus 665 ~~G~~~ILL~TErahffRr~dIkgV~~VIf----Y~-----lP~~pefY~erigrt~ra~---~g~~~~L~sk~D 727 (754)
++|.++|||||+.++ +|++++.+..||+ |+ .|.++..|.||+||+||.+ .|.|+.+....+
T Consensus 326 r~G~i~VLvaT~tla--~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 326 RDRLIKVISSTPTLA--AGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred HcCCCeEEEechhhh--hhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 999999999999999 9999999999997 77 6888999999999999987 388888876543
No 54
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.98 E-value=1.2e-30 Score=309.83 Aligned_cols=312 Identities=17% Similarity=0.213 Sum_probs=226.4
Q ss_pred HHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccC
Q 004428 261 KQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDR 340 (754)
Q Consensus 261 iQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQ 340 (754)
+-.+++..+.+.+||+..++|| +|||.+|.+++|++..
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TG---------SGKTt~~pl~lL~~~~--------------------------------- 46 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTG---------AGKSTWLPLQLLQHGG--------------------------------- 46 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCC---------CCHHHHHHHHHHHcCC---------------------------------
Confidence 3355667777899999999998 8999999999997531
Q ss_pred CCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCc
Q 004428 341 GFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDY 420 (754)
Q Consensus 341 GftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~ 420 (754)
..++|||+.|||++|.|+.+.+.+.....-...| |.
T Consensus 47 --~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V----------Gy-------------------------------- 82 (812)
T PRK11664 47 --INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV----------GY-------------------------------- 82 (812)
T ss_pred --cCCeEEEECChHHHHHHHHHHHHHHhCcccCceE----------EE--------------------------------
Confidence 1247999999999999999988654321100000 00
Q ss_pred eeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchh-hhhcCc
Q 004428 421 QILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADI-ILMQNW 499 (754)
Q Consensus 421 ~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~-mLmQNw 499 (754)
..+| .. .+ + .+.+|+|+|||+|..++.. +. .|+.+.++||||||. ++....
T Consensus 83 --~vr~------------~~-~~---~--~~t~I~v~T~G~Llr~l~~-------d~-~L~~v~~IIlDEaHER~l~~Dl 134 (812)
T PRK11664 83 --RMRA------------ES-KV---G--PNTRLEVVTEGILTRMIQR-------DP-ELSGVGLVILDEFHERSLQADL 134 (812)
T ss_pred --EecC------------cc-cc---C--CCCcEEEEChhHHHHHHhh-------CC-CcCcCcEEEEcCCCccccccch
Confidence 0001 00 00 0 2468999999999998862 33 599999999999996 453321
Q ss_pred --hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccc
Q 004428 500 --SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPK 577 (754)
Q Consensus 500 --~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~ 577 (754)
..+..++ ..+|.+ .|+|+||||++.+. +..++.|.+ .|.+ .|.
T Consensus 135 ~L~ll~~i~---~~lr~~---------------------lqlilmSATl~~~~---l~~~~~~~~-~I~~----~gr--- 179 (812)
T PRK11664 135 ALALLLDVQ---QGLRDD---------------------LKLLIMSATLDNDR---LQQLLPDAP-VIVS----EGR--- 179 (812)
T ss_pred HHHHHHHHH---HhCCcc---------------------ceEEEEecCCCHHH---HHHhcCCCC-EEEe----cCc---
Confidence 2233333 223332 79999999999762 345665532 3332 121
Q ss_pred cccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHh---CCCceEeecCCCCH
Q 004428 578 VLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKS---QNASFCLLGDYTEP 654 (754)
Q Consensus 578 v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~---~~~~f~~Ihey~sq 654 (754)
...|++.|..+... .++.-.+..++-.+.....+.+|||+|+..+..++.+.|++ .++.+..+|+.+++
T Consensus 180 -~~pV~~~y~~~~~~-------~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~ 251 (812)
T PRK11664 180 -SFPVERRYQPLPAH-------QRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSL 251 (812)
T ss_pred -cccceEEeccCchh-------hhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCH
Confidence 22477777654321 12221122233333333468899999999999999999987 68899999999999
Q ss_pred HHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCc------------------hhhhccccCCCCC
Q 004428 655 SDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEF------------------YPEIVNMLEGSHN 716 (754)
Q Consensus 655 ~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pef------------------Y~erigrt~ra~~ 716 (754)
.++.+++..|.+|+.+|||+|++|. ||++|+||++||++++|..+.| |.||+||+||...
T Consensus 252 ~eq~~~~~~~~~G~rkVlvATnIAE--rsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~ 329 (812)
T PRK11664 252 AEQQKAILPAPAGRRKVVLATNIAE--TSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEP 329 (812)
T ss_pred HHHHHHhccccCCCeEEEEecchHH--hcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCC
Confidence 9999999999999999999999999 9999999999999999988765 9999999999989
Q ss_pred ceEEEEechhcHHHH
Q 004428 717 MTCTVLFSRFDMLRL 731 (754)
Q Consensus 717 g~~~~L~sk~D~~~L 731 (754)
|.|+.||++.+...|
T Consensus 330 G~cyrL~t~~~~~~l 344 (812)
T PRK11664 330 GICLHLYSKEQAERA 344 (812)
T ss_pred cEEEEecCHHHHhhC
Confidence 999999998876544
No 55
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.98 E-value=2.4e-30 Score=298.58 Aligned_cols=326 Identities=16% Similarity=0.144 Sum_probs=234.4
Q ss_pred CCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccc
Q 004428 253 GGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGIL 332 (754)
Q Consensus 253 g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~ 332 (754)
|+.. ++|+|+++|+.+++|+|++++++|| +|||.+|.||+|.+
T Consensus 10 g~~~-fr~~Q~~~i~~il~g~dvlv~~PTG---------~GKTl~y~lpal~~--------------------------- 52 (591)
T TIGR01389 10 GYDD-FRPGQEEIISHVLDGRDVLVVMPTG---------GGKSLCYQVPALLL--------------------------- 52 (591)
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEEcCCC---------ccHhHHHHHHHHHc---------------------------
Confidence 7776 7999999999999999999999998 89999999999731
Q ss_pred cccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCC
Q 004428 333 IGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNS 412 (754)
Q Consensus 333 ~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~ 412 (754)
.| .+|||+||++|+.|.++.+..+.-. + ..+++.
T Consensus 53 -------~g----~~lVisPl~sL~~dq~~~l~~~gi~-----~-------~~~~s~----------------------- 86 (591)
T TIGR01389 53 -------KG----LTVVISPLISLMKDQVDQLRAAGVA-----A-------AYLNST----------------------- 86 (591)
T ss_pred -------CC----cEEEEcCCHHHHHHHHHHHHHcCCc-----E-------EEEeCC-----------------------
Confidence 11 3799999999999999998876321 1 011111
Q ss_pred CCCCCCCceeeccCCCCCcccccccccHHHHh-hhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 413 QKSKPSDYQILFGGNNDDNFSIGIKFTRKSIK-LYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 413 ~~~KP~D~~~lF~GN~dD~FriGik~trk~lk-Lys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
.+ ..-....++ +.+ ...+||++||.+|....- ........|.++|||||
T Consensus 87 ---------------~~------~~~~~~~~~~l~~--~~~~il~~tpe~l~~~~~-------~~~l~~~~l~~iViDEa 136 (591)
T TIGR01389 87 ---------------LS------AKEQQDIEKALVN--GELKLLYVAPERLEQDYF-------LNMLQRIPIALVAVDEA 136 (591)
T ss_pred ---------------CC------HHHHHHHHHHHhC--CCCCEEEEChhHhcChHH-------HHHHhcCCCCEEEEeCC
Confidence 00 000001111 111 468999999999853211 01123568999999999
Q ss_pred hhhhhcCchH-----HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEE
Q 004428 492 DIILMQNWSW-----LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVK 566 (754)
Q Consensus 492 D~mLmQNw~h-----v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vk 566 (754)
|.+.. |.| +..|.......|. .++|+||||.++.+..-+...+......+.
T Consensus 137 H~i~~--~g~~frp~y~~l~~l~~~~~~----------------------~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~ 192 (591)
T TIGR01389 137 HCVSQ--WGHDFRPEYQRLGSLAERFPQ----------------------VPRIALTATADAETRQDIRELLRLADANEF 192 (591)
T ss_pred ccccc--ccCccHHHHHHHHHHHHhCCC----------------------CCEEEEEeCCCHHHHHHHHHHcCCCCCCeE
Confidence 99873 543 2233333333343 459999999999987655555442221221
Q ss_pred EeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceE
Q 004428 567 LACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFC 646 (754)
Q Consensus 567 v~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~ 646 (754)
+.. .. .+.+ .|...... .+.. .++..+......++||||+|..++..|..+|...++++.
T Consensus 193 ~~~-----~~--r~nl--~~~v~~~~-------~~~~----~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~ 252 (591)
T TIGR01389 193 ITS-----FD--RPNL--RFSVVKKN-------NKQK----FLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISAL 252 (591)
T ss_pred ecC-----CC--CCCc--EEEEEeCC-------CHHH----HHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEE
Confidence 110 00 1111 22222211 1222 233333333457899999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEech
Q 004428 647 LLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSR 725 (754)
Q Consensus 647 ~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk 725 (754)
.+|+.+++.+|.++...|.+|+++|||+|+.+. +|+|+++|++||+|++|.+++.|.+++||+||.| .+.|+.+|+.
T Consensus 253 ~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~--~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~ 330 (591)
T TIGR01389 253 AYHAGLSNKVRAENQEDFLYDDVKVMVATNAFG--MGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSP 330 (591)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCcEEEEechhh--ccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCH
Confidence 999999999999999999999999999999988 9999999999999999999999999999999988 6789999999
Q ss_pred hcHHHHHHHhCc
Q 004428 726 FDMLRLERIVGS 737 (754)
Q Consensus 726 ~D~~~LErIVGt 737 (754)
.|...+.+++..
T Consensus 331 ~d~~~~~~~i~~ 342 (591)
T TIGR01389 331 ADIALLKRRIEQ 342 (591)
T ss_pred HHHHHHHHHHhc
Confidence 998777766643
No 56
>PRK00254 ski2-like helicase; Provisional
Probab=99.97 E-value=2.3e-29 Score=296.72 Aligned_cols=338 Identities=11% Similarity=0.100 Sum_probs=236.2
Q ss_pred CcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhh-hhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 231 LYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSL-CNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 231 ~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~-i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
.|.++++++.+.+.+.+. |+.. ++|+|.++|+. +++++|++++++|| +|||.+|.|++++|+++.
T Consensus 2 ~~~~l~l~~~~~~~l~~~----g~~~-l~~~Q~~ai~~~~~~g~nvlv~apTG---------sGKT~~~~l~il~~l~~~ 67 (720)
T PRK00254 2 KVDELRVDERIKRVLKER----GIEE-LYPPQAEALKSGVLEGKNLVLAIPTA---------SGKTLVAEIVMVNKLLRE 67 (720)
T ss_pred cHHHcCCCHHHHHHHHhC----CCCC-CCHHHHHHHHHHHhCCCcEEEECCCC---------cHHHHHHHHHHHHHHHhc
Confidence 578899999999998874 8876 79999999985 89999999999998 899999999999998632
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
.+++|+|+|||+||.|+++.+..+.... .+...
T Consensus 68 ----------------------------------~~~~l~l~P~~aLa~q~~~~~~~~~~~g--------~~v~~----- 100 (720)
T PRK00254 68 ----------------------------------GGKAVYLVPLKALAEEKYREFKDWEKLG--------LRVAM----- 100 (720)
T ss_pred ----------------------------------CCeEEEEeChHHHHHHHHHHHHHHhhcC--------CEEEE-----
Confidence 2589999999999999999988763211 01111
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
+.|+.+. ..+.+ ..+||||+||.++..++..
T Consensus 101 ----------------------------------~~Gd~~~--------~~~~~------~~~~IiV~Tpe~~~~ll~~- 131 (720)
T PRK00254 101 ----------------------------------TTGDYDS--------TDEWL------GKYDIIIATAEKFDSLLRH- 131 (720)
T ss_pred ----------------------------------EeCCCCC--------chhhh------ccCCEEEEcHHHHHHHHhC-
Confidence 1221110 01111 3589999999999888762
Q ss_pred hcccccCcccCCceeEEEEecchhhhhc-CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIILMQ-NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mLmQ-Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
...+++.|+++||||||.|... .-..+..++..+ +. ..|.+++|||++.
T Consensus 132 ------~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l---~~---------------------~~qiI~lSATl~n 181 (720)
T PRK00254 132 ------GSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHM---LG---------------------RAQILGLSATVGN 181 (720)
T ss_pred ------CchhhhcCCEEEEcCcCccCCccchHHHHHHHHhc---Cc---------------------CCcEEEEEccCCC
Confidence 2357999999999999999743 334566665543 22 2799999999962
Q ss_pred HHHHHHHHhhcCCCceEEEeecccCccccccc--c-eeEEEEEeccCcccchhHHHH-HHHHHHHhHHhhhcCCCcEEEE
Q 004428 549 EINAFFNHHCANYQGKVKLACEYKGVLPKVLL--N-VRQIYERFNADSIAKADDARL-EYFTKKVFPKIKDSIQGGIMLF 624 (754)
Q Consensus 549 einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~--~-I~Q~f~r~~~~s~~~~~d~Rf-~yF~~~iLp~l~~~~~~~tLIF 624 (754)
...+. .++... + +.+.+. .+.. . +.|.|..++... ..++ .... .++..+.. ..+++|||
T Consensus 182 -~~~la-~wl~~~---~-~~~~~r----pv~l~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~i~-~~~~vLVF 244 (720)
T PRK00254 182 -AEELA-EWLNAE---L-VVSDWR----PVKLRKGVFYQGFLFWEDGK-----IERFPNSWE-SLVYDAVK-KGKGALVF 244 (720)
T ss_pred -HHHHH-HHhCCc---c-ccCCCC----CCcceeeEecCCeeeccCcc-----hhcchHHHH-HHHHHHHH-hCCCEEEE
Confidence 23333 233211 1 111100 0000 0 112222222111 0111 0011 12222222 35789999
Q ss_pred ecchhcHHHHHHHHHhC---------------------------------CCceEeecCCCCHHHHHHHHHHHhcCCccE
Q 004428 625 LSSYFEFVRLRNFLKSQ---------------------------------NASFCLLGDYTEPSDISRARVWFFEGKRKM 671 (754)
Q Consensus 625 v~Sy~d~vrlrn~Lk~~---------------------------------~~~f~~Ihey~sq~~r~rar~~F~~G~~~I 671 (754)
|+|+..+..+...|.+. ...++.+|+.+++.+|..+...|++|.++|
T Consensus 245 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~V 324 (720)
T PRK00254 245 VNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKV 324 (720)
T ss_pred EcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeE
Confidence 99999998877666421 124788999999999999999999999999
Q ss_pred EEEcccccccCccccCCCCeEE-------EccCCCCCC-chhhhccccCCCC---CceEEEEechhc
Q 004428 672 ILYTERSHFYHRYKIRGIQNLI-------IYSLPERKE-FYPEIVNMLEGSH---NMTCTVLFSRFD 727 (754)
Q Consensus 672 LL~TErahffRr~dIkgV~~VI-------fY~lP~~pe-fY~erigrt~ra~---~g~~~~L~sk~D 727 (754)
||||+.++ +|++|+++..|| +|+.|..|. .|.||+||+||.+ .|.|+.+.+..+
T Consensus 325 LvaT~tLa--~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 325 ITATPTLS--AGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred EEeCcHHh--hhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999 999999999999 478887665 7999999999975 588888776544
No 57
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.97 E-value=6.9e-29 Score=291.08 Aligned_cols=331 Identities=12% Similarity=0.091 Sum_probs=224.7
Q ss_pred HHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCc------cEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCc
Q 004428 239 PKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYR------DILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDL 312 (754)
Q Consensus 239 ~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~------Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~ 312 (754)
..+.+.|.+. .+|. +|++|+.+++.+.++. ++|.++.|| +|||.+|+++++..+.+
T Consensus 248 ~~~~~~~~~~---l~f~--lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TG---------SGKT~va~~~il~~~~~---- 309 (681)
T PRK10917 248 GELLKKFLAS---LPFE--LTGAQKRVVAEILADLASPKPMNRLLQGDVG---------SGKTVVAALAALAAIEA---- 309 (681)
T ss_pred hHHHHHHHHh---CCCC--CCHHHHHHHHHHHHhhhccCCceEEEECCCC---------CcHHHHHHHHHHHHHHc----
Confidence 4566666554 3663 7999999999998874 899999998 89999999999987631
Q ss_pred cccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccc
Q 004428 313 VTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEE 392 (754)
Q Consensus 313 V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~ 392 (754)
.++||||+|||+||.|+.+.+.++.+... + +..-..|+.
T Consensus 310 -------------------------------g~q~lilaPT~~LA~Q~~~~l~~l~~~~~-i------~v~ll~G~~--- 348 (681)
T PRK10917 310 -------------------------------GYQAALMAPTEILAEQHYENLKKLLEPLG-I------RVALLTGSL--- 348 (681)
T ss_pred -------------------------------CCeEEEEeccHHHHHHHHHHHHHHHhhcC-c------EEEEEcCCC---
Confidence 35799999999999999999999875421 1 111122222
Q ss_pred cCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCccccccccc--HHHHhhhcccCCCCEEEeCchhHHHHHhhhh
Q 004428 393 EDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFT--RKSIKLYNDFYTSDMIVASPINLHQKMTKAE 470 (754)
Q Consensus 393 ~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~t--rk~lkLys~Fy~sDIIVASPlgLr~lI~~~e 470 (754)
+.. +..++-... ..+|||||||+.|...
T Consensus 349 --------------------------------------------~~~~r~~~~~~l~~-g~~~IvVgT~~ll~~~----- 378 (681)
T PRK10917 349 --------------------------------------------KGKERREILEAIAS-GEADIVIGTHALIQDD----- 378 (681)
T ss_pred --------------------------------------------CHHHHHHHHHHHhC-CCCCEEEchHHHhccc-----
Confidence 111 112221111 3599999999877432
Q ss_pred cccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHH
Q 004428 471 ENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEI 550 (754)
Q Consensus 471 ~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pei 550 (754)
..+..+.++||||||++-...+. .+.. .+ ...|+|+||||..|..
T Consensus 379 -------v~~~~l~lvVIDE~Hrfg~~qr~----~l~~---~~---------------------~~~~iL~~SATp~prt 423 (681)
T PRK10917 379 -------VEFHNLGLVIIDEQHRFGVEQRL----ALRE---KG---------------------ENPHVLVMTATPIPRT 423 (681)
T ss_pred -------chhcccceEEEechhhhhHHHHH----HHHh---cC---------------------CCCCEEEEeCCCCHHH
Confidence 23788999999999997532111 1111 11 1278999999998876
Q ss_pred HHHHHHhhcCCCceEEEeec-ccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc--
Q 004428 551 NAFFNHHCANYQGKVKLACE-YKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS-- 627 (754)
Q Consensus 551 nsL~~~~~~N~~G~Vkv~~~-~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S-- 627 (754)
.++.. .... .+.+... ..| ...|.+.+...+ . .+ +. ...+...+ ....+++||||.
T Consensus 424 l~~~~--~g~~--~~s~i~~~p~~-----r~~i~~~~~~~~--~----~~-~~---~~~i~~~~--~~g~q~~v~~~~ie 482 (681)
T PRK10917 424 LAMTA--YGDL--DVSVIDELPPG-----RKPITTVVIPDS--R----RD-EV---YERIREEI--AKGRQAYVVCPLIE 482 (681)
T ss_pred HHHHH--cCCC--ceEEEecCCCC-----CCCcEEEEeCcc--c----HH-HH---HHHHHHHH--HcCCcEEEEEcccc
Confidence 55442 1111 1111111 011 123444433211 1 11 11 11121122 245689999994
Q ss_pred ------hhcHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC
Q 004428 628 ------YFEFVRLRNFLKSQ--NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE 699 (754)
Q Consensus 628 ------y~d~vrlrn~Lk~~--~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~ 699 (754)
+.....+...|++. ++.+..+|+.+++.+|.+++..|++|+++|||+|+++. +|+||++|+.||+|++|.
T Consensus 483 ~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie--~GiDip~v~~VIi~~~~r 560 (681)
T PRK10917 483 ESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIE--VGVDVPNATVMVIENAER 560 (681)
T ss_pred cccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECccee--eCcccCCCcEEEEeCCCC
Confidence 34456667777765 57899999999999999999999999999999999999 999999999999999998
Q ss_pred CCCchhh-hccccCCCC-CceEEEEec-h---hcHHHHHHHhC
Q 004428 700 RKEFYPE-IVNMLEGSH-NMTCTVLFS-R---FDMLRLERIVG 736 (754)
Q Consensus 700 ~pefY~e-rigrt~ra~-~g~~~~L~s-k---~D~~~LErIVG 736 (754)
....|.| |+||+||.+ .|.|+.+++ + ....+|+.+..
T Consensus 561 ~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~ 603 (681)
T PRK10917 561 FGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRE 603 (681)
T ss_pred CCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHH
Confidence 7655555 999999987 799999985 3 33455555443
No 58
>PRK01172 ski2-like helicase; Provisional
Probab=99.96 E-value=8.1e-28 Score=281.55 Aligned_cols=344 Identities=12% Similarity=0.096 Sum_probs=234.9
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
+.|++++|++.+++.|.+. ++. ++|+|+++++.+.++++++++++|| +|||.++.+++++++..
T Consensus 1 ~~~~~~~l~~~~~~~~~~~----~~~--l~~~Q~~ai~~l~~~~nvlv~apTG---------SGKTl~a~lail~~l~~- 64 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTGN----DFE--LYDHQRMAIEQLRKGENVIVSVPTA---------AGKTLIAYSAIYETFLA- 64 (674)
T ss_pred CcHhhcCCCHHHHHHHhhC----CCC--CCHHHHHHHHHHhcCCcEEEECCCC---------chHHHHHHHHHHHHHHh-
Confidence 3578899999999998774 553 6999999999999999999999998 89999999999998742
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
..++|+|+|||+||.|+.+.+.++..... +.....|
T Consensus 65 ----------------------------------~~k~v~i~P~raLa~q~~~~~~~l~~~g~--------~v~~~~G-- 100 (674)
T PRK01172 65 ----------------------------------GLKSIYIVPLRSLAMEKYEELSRLRSLGM--------RVKISIG-- 100 (674)
T ss_pred ----------------------------------CCcEEEEechHHHHHHHHHHHHHHhhcCC--------eEEEEeC--
Confidence 14789999999999999999987642211 1111112
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
+.++ ..+.+ ..+|||||||.++..++..
T Consensus 101 -------------------------------------~~~~--------~~~~~------~~~dIiv~Tpek~~~l~~~- 128 (674)
T PRK01172 101 -------------------------------------DYDD--------PPDFI------KRYDVVILTSEKADSLIHH- 128 (674)
T ss_pred -------------------------------------CCCC--------Chhhh------ccCCEEEECHHHHHHHHhC-
Confidence 1110 00111 2579999999999988862
Q ss_pred hcccccCcccCCceeEEEEecchhhhhcCch-HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIILMQNWS-WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~-hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
+..+|.+|.++||||||.+....+. .+..++..+..++. -.|.|++|||++.
T Consensus 129 ------~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~---------------------~~riI~lSATl~n 181 (674)
T PRK01172 129 ------DPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNP---------------------DARILALSATVSN 181 (674)
T ss_pred ------ChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCc---------------------CCcEEEEeCccCC
Confidence 3457999999999999999865554 45555555443332 2789999999963
Q ss_pred HHHHHHHHhhcCCCceEEEeecccCcccccccce-----eEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEE
Q 004428 549 EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNV-----RQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIML 623 (754)
Q Consensus 549 einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I-----~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLI 623 (754)
...+.. ++.- . . +.... ..+...+ .+.+. +.. .|...-+..++.... ...+++||
T Consensus 182 -~~~la~-wl~~-~-~--~~~~~----r~vpl~~~i~~~~~~~~--~~~-------~~~~~~~~~~i~~~~-~~~~~vLV 241 (674)
T PRK01172 182 -ANELAQ-WLNA-S-L--IKSNF----RPVPLKLGILYRKRLIL--DGY-------ERSQVDINSLIKETV-NDGGQVLV 241 (674)
T ss_pred -HHHHHH-HhCC-C-c--cCCCC----CCCCeEEEEEecCeeee--ccc-------ccccccHHHHHHHHH-hCCCcEEE
Confidence 333332 2211 0 1 11110 0010010 11111 111 111111112222211 24578999
Q ss_pred EecchhcHHHHHHHHHhCC-------------------------CceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccc
Q 004428 624 FLSSYFEFVRLRNFLKSQN-------------------------ASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERS 678 (754)
Q Consensus 624 Fv~Sy~d~vrlrn~Lk~~~-------------------------~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEra 678 (754)
||++..++..+...|.+.. ..++.+|+.+++.+|..+...|++|.++|||||+.+
T Consensus 242 F~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~l 321 (674)
T PRK01172 242 FVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTL 321 (674)
T ss_pred EeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchh
Confidence 9999999999999886531 135678999999999999999999999999999999
Q ss_pred cccCccccCCCCeEEEccCCCC---------CCchhhhccccCCCC---CceEEEEec-hhcHHHHHHHh
Q 004428 679 HFYHRYKIRGIQNLIIYSLPER---------KEFYPEIVNMLEGSH---NMTCTVLFS-RFDMLRLERIV 735 (754)
Q Consensus 679 hffRr~dIkgV~~VIfY~lP~~---------pefY~erigrt~ra~---~g~~~~L~s-k~D~~~LErIV 735 (754)
+ +|++|++. +||+++.|.+ +..|.||+||+||.+ .|.++++.. ..+...+++.+
T Consensus 322 a--~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l 388 (674)
T PRK01172 322 A--AGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYL 388 (674)
T ss_pred h--ccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHH
Confidence 9 99999985 7888887643 334679999999987 466666543 33344455554
No 59
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.96 E-value=8.1e-28 Score=279.94 Aligned_cols=319 Identities=14% Similarity=0.096 Sum_probs=215.9
Q ss_pred CCCCCCCCHHHHHHhhhhhCCc------cEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYR------DILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKV 325 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~------Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~ 325 (754)
.+| . +|+.|+.+++.+++.. ++|.++.|| +|||.+|++++++.+.+
T Consensus 232 lpf-~-lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TG---------SGKT~va~l~il~~~~~----------------- 283 (630)
T TIGR00643 232 LPF-K-LTRAQKRVVKEILQDLKSDVPMNRLLQGDVG---------SGKTLVAALAMLAAIEA----------------- 283 (630)
T ss_pred CCC-C-CCHHHHHHHHHHHHHhccCCCccEEEECCCC---------CcHHHHHHHHHHHHHHc-----------------
Confidence 377 3 7999999999998762 579999998 89999999999987731
Q ss_pred ccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhccc
Q 004428 326 SAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIR 405 (754)
Q Consensus 326 ~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~ 405 (754)
.++||||+|||+||.|+.+.+.++.+... + +..-..|+.
T Consensus 284 ------------------g~qvlilaPT~~LA~Q~~~~~~~l~~~~g-i------~v~lltg~~---------------- 322 (630)
T TIGR00643 284 ------------------GYQVALMAPTEILAEQHYNSLRNLLAPLG-I------EVALLTGSL---------------- 322 (630)
T ss_pred ------------------CCcEEEECCHHHHHHHHHHHHHHHhcccC-c------EEEEEecCC----------------
Confidence 25799999999999999999999865421 1 111222222
Q ss_pred ccccCCCCCCCCCCceeeccCCCCCcccccccccH--HHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCce
Q 004428 406 GTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTR--KSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSI 483 (754)
Q Consensus 406 n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~tr--k~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSI 483 (754)
+... ..+.-.. -..+||||+||..|... ..+..+
T Consensus 323 -------------------------------~~~~r~~~~~~i~-~g~~~IiVgT~~ll~~~------------~~~~~l 358 (630)
T TIGR00643 323 -------------------------------KGKRRKELLETIA-SGQIHLVVGTHALIQEK------------VEFKRL 358 (630)
T ss_pred -------------------------------CHHHHHHHHHHHh-CCCCCEEEecHHHHhcc------------cccccc
Confidence 1111 1111111 13689999999887532 136789
Q ss_pred eEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCc
Q 004428 484 EVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQG 563 (754)
Q Consensus 484 EiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G 563 (754)
.++||||||++-...+. .+.... +. ....|+|++|||..|....+.. . |
T Consensus 359 ~lvVIDEaH~fg~~qr~---~l~~~~---~~-------------------~~~~~~l~~SATp~prtl~l~~--~----~ 407 (630)
T TIGR00643 359 ALVIIDEQHRFGVEQRK---KLREKG---QG-------------------GFTPHVLVMSATPIPRTLALTV--Y----G 407 (630)
T ss_pred ceEEEechhhccHHHHH---HHHHhc---cc-------------------CCCCCEEEEeCCCCcHHHHHHh--c----C
Confidence 99999999997421111 122211 10 0136899999998886544432 1 2
Q ss_pred eEEEe--ec-ccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh--cCCCcEEEEecch--------hc
Q 004428 564 KVKLA--CE-YKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD--SIQGGIMLFLSSY--------FE 630 (754)
Q Consensus 564 ~Vkv~--~~-~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy--------~d 630 (754)
.+.+. .. ..| ...|.+.+.. ... + . .++..+.. ....+++||||.. ..
T Consensus 408 ~l~~~~i~~~p~~-----r~~i~~~~~~--~~~-------~-~----~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~ 468 (630)
T TIGR00643 408 DLDTSIIDELPPG-----RKPITTVLIK--HDE-------K-D----IVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKA 468 (630)
T ss_pred CcceeeeccCCCC-----CCceEEEEeC--cch-------H-H----HHHHHHHHHHHhCCcEEEEEccccccccchHHH
Confidence 22211 11 011 1234333322 111 1 1 22222222 2356899999975 33
Q ss_pred HHHHHHHHHh--CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhh-h
Q 004428 631 FVRLRNFLKS--QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPE-I 707 (754)
Q Consensus 631 ~vrlrn~Lk~--~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~e-r 707 (754)
+..+...|++ .++.++.+|+.+++.+|.+++..|++|+.+|||+|+++. +|+||++|++||+|+.|.....|.| |
T Consensus 469 a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie--~GvDiP~v~~VIi~~~~r~gls~lhQ~ 546 (630)
T TIGR00643 469 AEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIE--VGVDVPNATVMVIEDAERFGLSQLHQL 546 (630)
T ss_pred HHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceee--cCcccCCCcEEEEeCCCcCCHHHHHHH
Confidence 4556666665 478899999999999999999999999999999999999 9999999999999999987655555 9
Q ss_pred ccccCCCC-CceEEEEe----chhcHHHHHHHh
Q 004428 708 VNMLEGSH-NMTCTVLF----SRFDMLRLERIV 735 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~----sk~D~~~LErIV 735 (754)
+||+||.+ .|.|+.++ +..+..+|+.+.
T Consensus 547 ~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~ 579 (630)
T TIGR00643 547 RGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMA 579 (630)
T ss_pred hhhcccCCCCcEEEEEECCCCCHHHHHHHHHHH
Confidence 99999987 79999998 344445555443
No 60
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=5.3e-28 Score=279.32 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=105.1
Q ss_pred CCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC---CCC----
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR---GIQ---- 690 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk---gV~---- 690 (754)
..++||||+|..+...|.+.|++.|+++..||+. |.++.+++..|..+...||||||+|+ ||+||+ +|.
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~--~~~rE~~ii~~ag~~g~VlVATdmAg--RGtDI~l~~~V~~~GG 548 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREAGLPHQVLNAK--QDAEEAAIVARAGQRGRITVATNMAG--RGTDIKLEPGVAARGG 548 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCC--cHHHHHHHHHHcCCCCcEEEEccchh--cccCcCCccchhhcCC
Confidence 4679999999999999999999999999999997 55677777788777788999999999 999999 777
Q ss_pred -eEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhh
Q 004428 691 -NLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMV 744 (754)
Q Consensus 691 -~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~ 744 (754)
|||+|++|.++..|.||+|||||.| .|+|+.++|..|.+ =+..|..+..+|+
T Consensus 549 LhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l--~~~~~~~~~~~~~ 602 (656)
T PRK12898 549 LHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDL--LQSFLGSRGLAIR 602 (656)
T ss_pred CEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHH--HHhhhhHHHHHHH
Confidence 9999999999999999999999998 69999999987743 2445666655543
No 61
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.96 E-value=8.4e-28 Score=296.26 Aligned_cols=331 Identities=14% Similarity=0.125 Sum_probs=213.0
Q ss_pred ecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHH
Q 004428 278 SNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIA 357 (754)
Q Consensus 278 ~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA 357 (754)
+|+|| +|||.||.||+|+++++.... ++ + . . .. ...++||+|+|||+||
T Consensus 2 ~APTG---------SGKTLAA~LpaL~~Ll~~~~~---~~-~-------~-------~---~~-~~~~raLYISPLKALa 50 (1490)
T PRK09751 2 IAPTG---------SGKTLAAFLYALDRLFREGGE---DT-R-------E-------A---HK-RKTSRILYISPIKALG 50 (1490)
T ss_pred cCCCC---------cHHHHHHHHHHHHHHHhcccc---cc-c-------c-------c---cc-CCCCEEEEEeChHHHH
Confidence 57887 999999999999999864210 00 0 0 0 00 1247999999999999
Q ss_pred HHHHHHHHHhCCc-ccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccc
Q 004428 358 LNVVKRLIRLTPD-AHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGI 436 (754)
Q Consensus 358 ~qIv~~l~~L~~~-~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGi 436 (754)
.|+.+.|...... .. ...+ +|.. .+.--..+..|++
T Consensus 51 ~Dv~~~L~~pl~~i~~-----~~~~----~g~~--------------------------~~~i~V~vrtGDt-------- 87 (1490)
T PRK09751 51 TDVQRNLQIPLKGIAD-----ERRR----RGET--------------------------EVNLRVGIRTGDT-------- 87 (1490)
T ss_pred HHHHHHHHHHHHhhhh-----hhhh----cccc--------------------------cCceEEEEEECCC--------
Confidence 9999999763221 10 0011 2211 0001123444532
Q ss_pred cccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCc-hHHHHHHHHhccC-CC
Q 004428 437 KFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNW-SWLIEVVEQLNRI-PS 514 (754)
Q Consensus 437 k~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv~~Il~~Ln~~-Pk 514 (754)
.... ..++.. ..+||||+||.+|..+|.. + ....|++|++|||||+|.|+...+ .|+..+++.|..+ |.
T Consensus 88 ~~~e-R~rll~--~ppdILVTTPEsL~~LLts----k--~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~ 158 (1490)
T PRK09751 88 PAQE-RSKLTR--NPPDILITTPESLYLMLTS----R--ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT 158 (1490)
T ss_pred CHHH-HHHHhc--CCCCEEEecHHHHHHHHhh----h--hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCC
Confidence 1121 122222 3689999999999998862 1 234699999999999999995544 4777777665432 22
Q ss_pred CCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEecc-Cc
Q 004428 515 KQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNA-DS 593 (754)
Q Consensus 515 ~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~-~s 593 (754)
-.|+|+||||+++ ...+. +++... ..+.+...... . ...++ ++..+.. ..
T Consensus 159 ---------------------~~QrIgLSATI~n-~eevA-~~L~g~-~pv~Iv~~~~~---r-~~~l~-v~vp~~d~~~ 209 (1490)
T PRK09751 159 ---------------------SAQRIGLSATVRS-ASDVA-AFLGGD-RPVTVVNPPAM---R-HPQIR-IVVPVANMDD 209 (1490)
T ss_pred ---------------------CCeEEEEEeeCCC-HHHHH-HHhcCC-CCEEEECCCCC---c-ccceE-EEEecCchhh
Confidence 2799999999987 34444 454321 12333211100 0 11232 2221110 00
Q ss_pred ccc--------hhHHHH----HHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCC-------------------
Q 004428 594 IAK--------ADDARL----EYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQN------------------- 642 (754)
Q Consensus 594 ~~~--------~~d~Rf----~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~------------------- 642 (754)
... ....|. .+....++..+. ...+|||||+|...+.+|...|++..
T Consensus 210 ~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~ 287 (1490)
T PRK09751 210 VSSVASGTGEDSHAGREGSIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFES 287 (1490)
T ss_pred ccccccccccccchhhhhhhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhh
Confidence 000 000111 111122333332 24689999999999999999997631
Q ss_pred --------------CceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhc
Q 004428 643 --------------ASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIV 708 (754)
Q Consensus 643 --------------~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~eri 708 (754)
+.+...|+.+++.+|..+.+.|++|++++||||+.+. +|+||..|++||+|+.|.+...|.|||
T Consensus 288 ~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLE--LGIDIg~VDlVIq~gsP~sVas~LQRi 365 (1490)
T PRK09751 288 TSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLE--LGIDMGAVDLVIQVATPLSVASGLQRI 365 (1490)
T ss_pred ccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHH--ccCCcccCCEEEEeCCCCCHHHHHHHh
Confidence 1246788999999999999999999999999999999 999999999999999999999999999
Q ss_pred cccCCCCCceEEEEec
Q 004428 709 NMLEGSHNMTCTVLFS 724 (754)
Q Consensus 709 grt~ra~~g~~~~L~s 724 (754)
||+||...+.+.+++.
T Consensus 366 GRAGR~~gg~s~gli~ 381 (1490)
T PRK09751 366 GRAGHQVGGVSKGLFF 381 (1490)
T ss_pred CCCCCCCCCccEEEEE
Confidence 9999875455554444
No 62
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.95 E-value=2.8e-27 Score=255.60 Aligned_cols=323 Identities=12% Similarity=0.115 Sum_probs=206.4
Q ss_pred cEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccc
Q 004428 274 DILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPL 353 (754)
Q Consensus 274 Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PT 353 (754)
||+.+++|| +|||.+|+++++.++.+. ...++||++||
T Consensus 1 ~vvi~apTG---------sGKT~~~~~~~l~~~~~~---------------------------------~~~~ii~v~P~ 38 (358)
T TIGR01587 1 LLVIEAPTG---------YGKTEAALLWALHSIKSQ---------------------------------KADRVIIALPT 38 (358)
T ss_pred CEEEEeCCC---------CCHHHHHHHHHHHHHhhC---------------------------------CCCeEEEEeeh
Confidence 789999998 899999999999876421 13589999999
Q ss_pred hhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCccc
Q 004428 354 KSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFS 433 (754)
Q Consensus 354 RelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~Fr 433 (754)
|+||.|+.+.+..+.+.. +...+.......+....+ ...+...+.
T Consensus 39 ~~L~~q~~~~l~~~f~~~--~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~-------- 83 (358)
T TIGR01587 39 RATINAMYRRAKELFGSN--LGLLHSSSSFKRIKEMGD-------------------------SEEFEHLFP-------- 83 (358)
T ss_pred HHHHHHHHHHHHHHhCcc--cEEeeccHHHHHHhccCC-------------------------chhHHHHHH--------
Confidence 999999999999975321 000000000000000000 000000000
Q ss_pred ccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcc-cCCceeEEEEecchhhhhcCchHHHHHHHHhccC
Q 004428 434 IGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVD-YLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRI 512 (754)
Q Consensus 434 iGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~d-fLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~ 512 (754)
.+.+...+ ...++|+|+||..|...+...- +.+... ..-...++||||||.|+...|+++..++..+.
T Consensus 84 ---~~~~~~~~----~~~~~I~v~T~~~l~~~~~~~~--~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~-- 152 (358)
T TIGR01587 84 ---LYIHSNDK----LFLDPITVCTIDQVLKSVFGEF--GHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK-- 152 (358)
T ss_pred ---HHhhchhh----hhhCCeeeCCHHHHHHHHhccc--chHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--
Confidence 00011111 1347899999999988765211 001111 01223799999999999666777777776652
Q ss_pred CCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccC
Q 004428 513 PSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNAD 592 (754)
Q Consensus 513 Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~ 592 (754)
. ...|+|+||||++..+..++...+.... ...... .......+|.+..+...
T Consensus 153 -~--------------------~~~~~i~~SATlp~~l~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~ 204 (358)
T TIGR01587 153 -D--------------------NDVPILLMSATLPKFLKEYAEKIGYVEF---NEPLDL----KEERRFERHRFIKIESD 204 (358)
T ss_pred -H--------------------cCCCEEEEecCchHHHHHHHhcCCCccc---ccCCCC----ccccccccccceeeccc
Confidence 1 1279999999999877777665433210 000000 00000123333322211
Q ss_pred cccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCC--ceEeecCCCCHHHHHHH----HHHHhc
Q 004428 593 SIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNA--SFCLLGDYTEPSDISRA----RVWFFE 666 (754)
Q Consensus 593 s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~--~f~~Ihey~sq~~r~ra----r~~F~~ 666 (754)
.. .+... +..++..+ ...+++||||++..++..+.++|++.+. .+..+|+.+++.+|.+. ++.|++
T Consensus 205 ~~-----~~~~~-l~~l~~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~ 276 (358)
T TIGR01587 205 KV-----GEISS-LERLLEFI--KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK 276 (358)
T ss_pred cc-----cCHHH-HHHHHHHh--hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC
Confidence 11 11111 11232222 2357999999999999999999998766 59999999999999875 889999
Q ss_pred CCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-----CceEEEEech
Q 004428 667 GKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-----NMTCTVLFSR 725 (754)
Q Consensus 667 G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-----~g~~~~L~sk 725 (754)
|+.+|||+|+++. ||+|| ++..||+|..| ++.|.||+||+||.+ .|.+++++..
T Consensus 277 ~~~~ilvaT~~~~--~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 277 NEKFVIVATQVIE--ASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred CCCeEEEECcchh--ceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 9999999999999 99999 59999999888 678999999999976 2467776653
No 63
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.1e-26 Score=273.22 Aligned_cols=123 Identities=12% Similarity=0.046 Sum_probs=109.9
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCcccc---CCCC---
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKI---RGIQ--- 690 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dI---kgV~--- 690 (754)
...++||||+|..+...|.+.|.+.|+++..||+.+.++++......++.| +||||||.|+ ||+|| ++|+
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAg--RG~DI~l~~~V~~~G 502 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAG--RGTDIKLGEGVHELG 502 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchh--cCcCCCccccccccc
Confidence 467899999999999999999999999999999999998887777777766 7999999999 99999 5999
Q ss_pred --eEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 691 --NLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 691 --~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
|||+|++|.++..|.||+|||||.| .|+|+.++|..|.+. +..|.++..+|+.
T Consensus 503 GL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l~--~~~~~~~~~~~~~ 558 (790)
T PRK09200 503 GLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLL--KRFAPEELEKLKK 558 (790)
T ss_pred CcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHHH--HhhccHHHHHHHH
Confidence 9999999999999999999999998 699999999877543 5578888777764
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.94 E-value=9.6e-26 Score=256.17 Aligned_cols=306 Identities=10% Similarity=0.117 Sum_probs=209.3
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|+|.|+++++.++.+++.+.+++|| +|||.++++ +...++..
T Consensus 115 ~r~~Q~~av~~~l~~~~~il~apTG---------sGKT~i~~~-l~~~~~~~---------------------------- 156 (501)
T PHA02558 115 PHWYQYDAVYEGLKNNRRLLNLPTS---------AGKSLIQYL-LSRYYLEN---------------------------- 156 (501)
T ss_pred CCHHHHHHHHHHHhcCceEEEeCCC---------CCHHHHHHH-HHHHHHhc----------------------------
Confidence 7999999999999999999999998 899987654 22222211
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
..+++|||||||+|+.|+.+.|.++..... ..
T Consensus 157 -----~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~-------~~------------------------------------ 188 (501)
T PHA02558 157 -----YEGKVLIIVPTTSLVTQMIDDFVDYRLFPR-------EA------------------------------------ 188 (501)
T ss_pred -----CCCeEEEEECcHHHHHHHHHHHHHhccccc-------cc------------------------------------
Confidence 124899999999999999999998753210 00
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
...+++|... ..+.+|+||||.+|..... .++..+.++|+||||++...
T Consensus 189 --~~~i~~g~~~-------------------~~~~~I~VaT~qsl~~~~~----------~~~~~~~~iIvDEaH~~~~~ 237 (501)
T PHA02558 189 --MHKIYSGTAK-------------------DTDAPIVVSTWQSAVKQPK----------EWFDQFGMVIVDECHLFTGK 237 (501)
T ss_pred --eeEEecCccc-------------------CCCCCEEEeeHHHHhhchh----------hhccccCEEEEEchhcccch
Confidence 1122333110 0247999999999865321 25789999999999999854
Q ss_pred CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHH-HH-HHHhhcCCCceEEEeecc----
Q 004428 498 NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEIN-AF-FNHHCANYQGKVKLACEY---- 571 (754)
Q Consensus 498 Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pein-sL-~~~~~~N~~G~Vkv~~~~---- 571 (754)
.| ..|+..+ |. -||.+.||||...... .+ +..+| |.+......
T Consensus 238 ~~---~~il~~~---~~---------------------~~~~lGLTATp~~~~~~~~~~~~~f----G~i~~~v~~~~li 286 (501)
T PHA02558 238 SL---TSIITKL---DN---------------------CKFKFGLTGSLRDGKANILQYVGLF----GDIFKPVTTSQLM 286 (501)
T ss_pred hH---HHHHHhh---hc---------------------cceEEEEeccCCCccccHHHHHHhh----CCceEEecHHHHH
Confidence 44 4455443 32 2799999999864321 11 11122 223221110
Q ss_pred -cCcccccccceeEEEEEeccCcc--------------cchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHH
Q 004428 572 -KGVLPKVLLNVRQIYERFNADSI--------------AKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRN 636 (754)
Q Consensus 572 -~g~i~~v~~~I~Q~f~r~~~~s~--------------~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn 636 (754)
.|.+. ...+..++.++..... ....+.|-.. +..++..+. ....++|||+.+......|..
T Consensus 287 ~~g~l~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~-I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~ 362 (501)
T PHA02558 287 EEGQVT--DLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKW-IANLALKLA-KKGENTFVMFKYVEHGKPLYE 362 (501)
T ss_pred hCCCcC--CceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHH-HHHHHHHHH-hcCCCEEEEEEEHHHHHHHHH
Confidence 12111 1122222222211100 0011223221 112222222 234678888888889999999
Q ss_pred HHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc-ccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC
Q 004428 637 FLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT-ERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH 715 (754)
Q Consensus 637 ~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T-ErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~ 715 (754)
.|++.++++..|||.+++.+|.+.+..|++|+..|||+| +++. +|+||++|++||++.+|.+...|.|++||++|.+
T Consensus 363 ~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~--eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~ 440 (501)
T PHA02558 363 MLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFS--TGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKH 440 (501)
T ss_pred HHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceec--cccccccccEEEEecCCcchhhhhhhhhccccCC
Confidence 999999999999999999999999999999999999999 9999 9999999999999999999999999999999986
Q ss_pred Cc
Q 004428 716 NM 717 (754)
Q Consensus 716 ~g 717 (754)
.+
T Consensus 441 ~~ 442 (501)
T PHA02558 441 GS 442 (501)
T ss_pred CC
Confidence 43
No 65
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.94 E-value=2e-25 Score=271.72 Aligned_cols=231 Identities=19% Similarity=0.233 Sum_probs=167.7
Q ss_pred CCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecch-hhhhcCchHHHHHHHH-hccCCCCCCCCchhhhhhhh
Q 004428 451 TSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHAD-IILMQNWSWLIEVVEQ-LNRIPSKQHGTDVMRIRQWY 528 (754)
Q Consensus 451 ~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD-~mLmQNw~hv~~Il~~-Ln~~Pk~~h~~DfsRvR~w~ 528 (754)
++.|+|+|||+|...|.. + -+|+.+.++|||||| +++. .+.+..++.. +...|
T Consensus 163 ~t~I~v~TpG~LL~~l~~-------d-~~Ls~~~~IIIDEAHERsLn--~DfLLg~Lk~lL~~rp--------------- 217 (1294)
T PRK11131 163 NTMVKLMTDGILLAEIQQ-------D-RLLMQYDTIIIDEAHERSLN--IDFILGYLKELLPRRP--------------- 217 (1294)
T ss_pred CCCEEEEChHHHHHHHhc-------C-CccccCcEEEecCccccccc--cchHHHHHHHhhhcCC---------------
Confidence 589999999999998862 2 259999999999999 6773 3444433332 22222
Q ss_pred cccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHH
Q 004428 529 LDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKK 608 (754)
Q Consensus 529 L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~ 608 (754)
.+|+|+||||++++ . |.+++.|.+ .|.+. |. ...|++.|..+..... ......+...+..
T Consensus 218 -------dlKvILmSATid~e--~-fs~~F~~ap-vI~V~----Gr----~~pVei~y~p~~~~~~-~~~~d~l~~ll~~ 277 (1294)
T PRK11131 218 -------DLKVIITSATIDPE--R-FSRHFNNAP-IIEVS----GR----TYPVEVRYRPIVEEAD-DTERDQLQAIFDA 277 (1294)
T ss_pred -------CceEEEeeCCCCHH--H-HHHHcCCCC-EEEEc----Cc----cccceEEEeecccccc-hhhHHHHHHHHHH
Confidence 27999999999875 3 344444433 34432 21 1236666655432110 0011122222221
Q ss_pred HhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCc---eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccc
Q 004428 609 VFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNAS---FCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYK 685 (754)
Q Consensus 609 iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~---f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~d 685 (754)
+..+.....+.+|||+|+..+...+.+.|++.++. +..+|+.+++.++.++... .|..+|||+|++|. ||++
T Consensus 278 -V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAE--tSIT 352 (1294)
T PRK11131 278 -VDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAE--TSLT 352 (1294)
T ss_pred -HHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHh--hccc
Confidence 22233345688999999999999999999998765 6789999999999998775 58899999999999 9999
Q ss_pred cCCCCeEEEcc---------------CCCCC---CchhhhccccCCCCCceEEEEechhcHHHH
Q 004428 686 IRGIQNLIIYS---------------LPERK---EFYPEIVNMLEGSHNMTCTVLFSRFDMLRL 731 (754)
Q Consensus 686 IkgV~~VIfY~---------------lP~~p---efY~erigrt~ra~~g~~~~L~sk~D~~~L 731 (754)
|+||++||+|+ ||..| ..|.||+||+||...|.|+.|||+.|...+
T Consensus 353 IpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~ 416 (1294)
T PRK11131 353 VPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR 416 (1294)
T ss_pred cCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhh
Confidence 99999999996 67666 579999999999999999999999887655
No 66
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.94 E-value=2.4e-25 Score=259.04 Aligned_cols=124 Identities=14% Similarity=0.049 Sum_probs=112.2
Q ss_pred cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCC-------
Q 004428 616 SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRG------- 688 (754)
Q Consensus 616 ~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkg------- 688 (754)
....++||||+|..+...|.++|++.+++...||+. |.+|..++-.|..|...|+|||+.|. ||.||+.
T Consensus 403 ~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAg--RGtDI~l~~V~~~G 478 (745)
T TIGR00963 403 AKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAG--RGTDIKLEEVKELG 478 (745)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEecccc--CCcCCCccchhhcC
Confidence 356789999999999999999999999999999997 99999999999999999999999999 9999998
Q ss_pred CCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 689 IQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 689 V~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
.-|||+|++|.++..|.|++||+||.| .|++..++|..|-+. ++.|..+..+|+.
T Consensus 479 Gl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~--~~~~~~~~~~~~~ 534 (745)
T TIGR00963 479 GLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLM--RIFGGDRLEGLMR 534 (745)
T ss_pred CcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHHH--HhhhhHHHHHHHH
Confidence 559999999999999999999999998 699999999887543 4577777776654
No 67
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.93 E-value=1.5e-24 Score=253.73 Aligned_cols=122 Identities=12% Similarity=0.012 Sum_probs=108.3
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC---------
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR--------- 687 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk--------- 687 (754)
...++||||+|......|...|++.|+++..||+.+.++++......|+.| .||||||+|+ ||.||+
T Consensus 423 ~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAg--RGtDI~l~~~v~~~G 498 (762)
T TIGR03714 423 TGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAG--RGTDIKLGKGVAELG 498 (762)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccc--cccCCCCCccccccC
Confidence 457899999999999999999999999999999999998877776666666 7999999999 999999
Q ss_pred CCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 688 GIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 688 gV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
|+.+||+|++|....+ .||+|||||.| .|+|..++|..|.+. ++.|..+..+|+.
T Consensus 499 GL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l~--~~~~~~~~~~~~~ 554 (762)
T TIGR03714 499 GLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDLI--KRWSPSWLKKYYK 554 (762)
T ss_pred CeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchhhh--hhcchHHHHHHHH
Confidence 9999999999999877 99999999998 699999999877543 5678888877765
No 68
>PRK13766 Hef nuclease; Provisional
Probab=99.92 E-value=1.4e-22 Score=240.59 Aligned_cols=109 Identities=10% Similarity=0.050 Sum_probs=102.9
Q ss_pred cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCC--------CCHHHHHHHHHHHhcCCccEEEEcccccccCccccC
Q 004428 616 SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDY--------TEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR 687 (754)
Q Consensus 616 ~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey--------~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk 687 (754)
....++||||++...+..|..+|.+.++.+..+||. +++.+|.+++..|++|+.+|||+|+++. +|+||+
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~--eGldi~ 440 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAE--EGLDIP 440 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhh--cCCCcc
Confidence 356799999999999999999999999999999987 8999999999999999999999999999 999999
Q ss_pred CCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechh
Q 004428 688 GIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRF 726 (754)
Q Consensus 688 gV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~ 726 (754)
.+++||||++|.++.-|+||+||+||.+.|.++.|+++.
T Consensus 441 ~~~~VI~yd~~~s~~r~iQR~GR~gR~~~~~v~~l~~~~ 479 (773)
T PRK13766 441 SVDLVIFYEPVPSEIRSIQRKGRTGRQEEGRVVVLIAKG 479 (773)
T ss_pred cCCEEEEeCCCCCHHHHHHHhcccCcCCCCEEEEEEeCC
Confidence 999999999999999999999999998889999998743
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.91 E-value=6.5e-23 Score=223.96 Aligned_cols=333 Identities=15% Similarity=0.165 Sum_probs=202.9
Q ss_pred HHHHhhhhhCCcc--EEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccccc
Q 004428 262 QRSFFSLCNSYRD--ILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLD 339 (754)
Q Consensus 262 Q~~~ip~i~~y~D--vl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RD 339 (754)
|.++|+.+.++.+ ++.+++|| +|||.+|++++|++
T Consensus 2 Q~~~~~~~~~~~~~~~~i~apTG---------sGKT~~~~~~~l~~---------------------------------- 38 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTG---------AGKTLAWLTPLLHG---------------------------------- 38 (357)
T ss_pred HHHHHHHHHcCCCCEEEEECCCC---------CCHHHHHHHHHHHc----------------------------------
Confidence 8999999999885 67799998 89999999999841
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCC
Q 004428 340 RGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSD 419 (754)
Q Consensus 340 QGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D 419 (754)
..++|+|+||++||.|..+.+.++..... ..+..++.. +.+....+ .+. ...+
T Consensus 39 ----~~~~~~~~P~~aL~~~~~~~~~~~~~~~~---~~~~~~v~~-~~g~~~~d-------~~~------------~~~~ 91 (357)
T TIGR03158 39 ----ENDTIALYPTNALIEDQTEAIKEFVDVFK---PERDVNLLH-VSKATLKD-------IKE------------YAND 91 (357)
T ss_pred ----CCCEEEEeChHHHHHHHHHHHHHHHHhcC---CCCCceEEE-ecCCchHH-------HHH------------hhhh
Confidence 02479999999999999999888752110 011122222 22221000 000 0001
Q ss_pred ceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhccccc---CcccCCceeEEEEecchhhhh
Q 004428 420 YQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQ---DVDYLSSIEVLIIDHADIILM 496 (754)
Q Consensus 420 ~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~r---d~dfLSSIEiLVlDeAD~mLm 496 (754)
+...-.|.. . ..+.|+.++. ..++||+.+|--|..++...- +.+ ...|+.++.++|+||+|.+--
T Consensus 92 ~~~~~~g~~--~----~~~~r~~~~~----~~p~illT~p~~l~~llr~~~--~~~~~~~~~~~~~~~~iV~DE~H~~~~ 159 (357)
T TIGR03158 92 KVGSSKGEK--L----YNLLRNPIGT----STPIILLTNPDIFVYLTRFAY--IDRGDIAAGFYTKFSTVIFDEFHLYDA 159 (357)
T ss_pred hcccCccch--h----hhhHHHHHhc----CCCCEEEecHHHHHHHHhhhc--cCcccchhhhhcCCCEEEEecccccCc
Confidence 111112210 0 1112333332 368999999987776553110 111 123689999999999998652
Q ss_pred cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCce-E-EEeec---c
Q 004428 497 QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGK-V-KLACE---Y 571 (754)
Q Consensus 497 QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~-V-kv~~~---~ 571 (754)
.--..+...+..+. +..+.. ...+.+++|||+++.+...+..... .|. + .+... .
T Consensus 160 ~~~~~~~~~l~~~~-------------~~~~~~-----~~~~~i~lSAT~~~~~~~~l~~~~~--~~~~~~~v~g~~~~~ 219 (357)
T TIGR03158 160 KQLVGMLFLLAYMQ-------------LIRFFE-----CRRKFVFLSATPDPALILRLQNAKQ--AGVKIAPIDGEKYQF 219 (357)
T ss_pred ccchhhhhhhHHHH-------------HHHhhh-----cCCcEEEEecCCCHHHHHHHHhccc--cCceeeeecCccccc
Confidence 11112221111111 111111 1258999999999988777654311 111 1 11111 0
Q ss_pred ----------cC-cccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHh
Q 004428 572 ----------KG-VLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKS 640 (754)
Q Consensus 572 ----------~g-~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~ 640 (754)
.+ .+..+.+.+.+.+.. ... ..+..+..+...++..+.....+++||||+|...+.++.+.|++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~----~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~ 294 (357)
T TIGR03158 220 PDNPELEADNKTQSFRPVLPPVELELIP-APD----FKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQ 294 (357)
T ss_pred CCChhhhccccccccceeccceEEEEEe-CCc----hhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhh
Confidence 00 011233466666654 211 11222333333333333333457899999999999999999998
Q ss_pred CC--CceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccC
Q 004428 641 QN--ASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLE 712 (754)
Q Consensus 641 ~~--~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ 712 (754)
.+ +.+..+|+.++|.+|.++ ++..|||+|++++ ||+||+.+ +|| |+ |.+++.|+||+||+|
T Consensus 295 ~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~--rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 295 QGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVD--VGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred hCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHh--cccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 64 578899999999998765 4889999999999 99999988 777 56 999999999999997
No 70
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.87 E-value=2.3e-20 Score=228.43 Aligned_cols=231 Identities=19% Similarity=0.217 Sum_probs=161.8
Q ss_pred CCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecch-hhhhcCchHHHHHHHH-hccCCCCCCCCchhhhhhhh
Q 004428 451 TSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHAD-IILMQNWSWLIEVVEQ-LNRIPSKQHGTDVMRIRQWY 528 (754)
Q Consensus 451 ~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD-~mLmQNw~hv~~Il~~-Ln~~Pk~~h~~DfsRvR~w~ 528 (754)
+..|+|+|||.|...+.. + -+|+.+.++|||||| ++|. -+.+..+++. +...|
T Consensus 156 ~T~I~~~TdGiLLr~l~~-------d-~~L~~~~~IIIDEaHERsL~--~D~LL~lLk~il~~rp--------------- 210 (1283)
T TIGR01967 156 NTLVKLMTDGILLAETQQ-------D-RFLSRYDTIIIDEAHERSLN--IDFLLGYLKQLLPRRP--------------- 210 (1283)
T ss_pred CceeeeccccHHHHHhhh-------C-cccccCcEEEEcCcchhhcc--chhHHHHHHHHHhhCC---------------
Confidence 578999999999988862 2 269999999999999 6873 3445443333 22223
Q ss_pred cccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHH
Q 004428 529 LDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKK 608 (754)
Q Consensus 529 L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~ 608 (754)
-.|.|++|||++++ .|.+++.+.+ .|.+. |. ...|...|......... ...........
T Consensus 211 -------dLKlIlmSATld~~---~fa~~F~~ap-vI~V~----Gr----~~PVev~Y~~~~~~~~~-~~~~~~~~i~~- 269 (1283)
T TIGR01967 211 -------DLKIIITSATIDPE---RFSRHFNNAP-IIEVS----GR----TYPVEVRYRPLVEEQED-DDLDQLEAILD- 269 (1283)
T ss_pred -------CCeEEEEeCCcCHH---HHHHHhcCCC-EEEEC----CC----cccceeEEecccccccc-hhhhHHHHHHH-
Confidence 26899999999864 3444554432 33332 21 12355555443221100 00111111111
Q ss_pred HhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCC---CceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccc
Q 004428 609 VFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQN---ASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYK 685 (754)
Q Consensus 609 iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~---~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~d 685 (754)
++-.+.....+.+|||+|+..+...+.+.|.+.+ +.+..+|+.+++.++.++...+ +..+|+|+|++|. +|++
T Consensus 270 ~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAE--tSLT 345 (1283)
T TIGR01967 270 AVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAE--TSLT 345 (1283)
T ss_pred HHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHH--hccc
Confidence 2222333356889999999999999999999864 4588999999999999984433 3479999999999 9999
Q ss_pred cCCCCeEEEccCCC---------------CC---CchhhhccccCCCCCceEEEEechhcHHHH
Q 004428 686 IRGIQNLIIYSLPE---------------RK---EFYPEIVNMLEGSHNMTCTVLFSRFDMLRL 731 (754)
Q Consensus 686 IkgV~~VIfY~lP~---------------~p---efY~erigrt~ra~~g~~~~L~sk~D~~~L 731 (754)
|+||++||++++|. .+ ..|.||.||+||.+.|.|+.|||+.|...+
T Consensus 346 IpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~ 409 (1283)
T TIGR01967 346 VPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSR 409 (1283)
T ss_pred cCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhh
Confidence 99999999999654 33 369999999999999999999998876555
No 71
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.87 E-value=1.5e-20 Score=186.80 Aligned_cols=198 Identities=23% Similarity=0.326 Sum_probs=155.0
Q ss_pred cCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCC
Q 004428 232 YSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRD 311 (754)
Q Consensus 232 f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~ 311 (754)
|+++++++.+.+.+.+. |+.. |++.|+++++.+++++|++++++|| +|||.+|++|+++++.+.+.
T Consensus 1 ~~~~~~~~~i~~~l~~~----~~~~-~~~~Q~~~~~~~~~~~~~li~~~TG---------~GKT~~~~~~~l~~~~~~~~ 66 (203)
T cd00268 1 FEELGLSPELLRGIYAL----GFEK-PTPIQARAIPPLLSGRDVIGQAQTG---------SGKTAAFLIPILEKLDPSPK 66 (203)
T ss_pred CCcCCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhcCCcEEEECCCC---------CcHHHHHHHHHHHHHHhhcc
Confidence 67899999999988874 7765 8999999999999999999999998 89999999999999976521
Q ss_pred ccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCcc
Q 004428 312 LVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKE 391 (754)
Q Consensus 312 ~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~ 391 (754)
..+|+|||++||++||.|+.+.+..+..... + +..
T Consensus 67 ------------------------------~~~~~viii~p~~~L~~q~~~~~~~~~~~~~-~------~~~-------- 101 (203)
T cd00268 67 ------------------------------KDGPQALILAPTRELALQIAEVARKLGKHTN-L------KVV-------- 101 (203)
T ss_pred ------------------------------cCCceEEEEcCCHHHHHHHHHHHHHHhccCC-c------eEE--------
Confidence 1368999999999999999999998854321 0 111
Q ss_pred ccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhc
Q 004428 392 EEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEE 471 (754)
Q Consensus 392 ~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~ 471 (754)
.+.|+ .... +..+.+. .+++|||+||..|..++.+
T Consensus 102 -------------------------------~~~~~--------~~~~-~~~~~~~--~~~~iiv~T~~~l~~~l~~--- 136 (203)
T cd00268 102 -------------------------------VIYGG--------TSID-KQIRKLK--RGPHIVVATPGRLLDLLER--- 136 (203)
T ss_pred -------------------------------EEECC--------CCHH-HHHHHhc--CCCCEEEEChHHHHHHHHc---
Confidence 11111 1111 2233343 4799999999999998873
Q ss_pred ccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHH
Q 004428 472 NKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEI 550 (754)
Q Consensus 472 ~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pei 550 (754)
...++..++++|+||||.|. ++++.++..++..+ ++ .+|.+++|||+++.+
T Consensus 137 ----~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l---~~---------------------~~~~~~~SAT~~~~~ 188 (203)
T cd00268 137 ----GKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLL---PK---------------------DRQTLLFSATMPKEV 188 (203)
T ss_pred ----CCCChhhCCEEEEeChHHhhccChHHHHHHHHHhC---Cc---------------------ccEEEEEeccCCHHH
Confidence 23568999999999999997 55567777777665 32 389999999999999
Q ss_pred HHHHHHhhcCC
Q 004428 551 NAFFNHHCANY 561 (754)
Q Consensus 551 nsL~~~~~~N~ 561 (754)
..+.+.+|.++
T Consensus 189 ~~~~~~~~~~~ 199 (203)
T cd00268 189 RDLARKFLRNP 199 (203)
T ss_pred HHHHHHHCCCC
Confidence 99999998875
No 72
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.85 E-value=3.2e-19 Score=209.76 Aligned_cols=310 Identities=14% Similarity=0.110 Sum_probs=197.2
Q ss_pred CCHHHHHHhhhhhC---CccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccc
Q 004428 258 HSSKQRSFFSLCNS---YRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIG 334 (754)
Q Consensus 258 pTpiQ~~~ip~i~~---y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~ 334 (754)
+|+.|++++..+.+ +++++..+.|| +|||.+|+..+...+.
T Consensus 145 Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TG---------SGKT~v~l~~i~~~l~--------------------------- 188 (679)
T PRK05580 145 LNPEQAAAVEAIRAAAGFSPFLLDGVTG---------SGKTEVYLQAIAEVLA--------------------------- 188 (679)
T ss_pred CCHHHHHHHHHHHhccCCCcEEEECCCC---------ChHHHHHHHHHHHHHH---------------------------
Confidence 68999999999987 58999999998 8999999876554442
Q ss_pred cccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCC
Q 004428 335 DAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQK 414 (754)
Q Consensus 335 ~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~ 414 (754)
+| .+||||+||++||.|+++.|.+..+.. .....|+...
T Consensus 189 -----~g---~~vLvLvPt~~L~~Q~~~~l~~~fg~~----------v~~~~s~~s~----------------------- 227 (679)
T PRK05580 189 -----QG---KQALVLVPEIALTPQMLARFRARFGAP----------VAVLHSGLSD----------------------- 227 (679)
T ss_pred -----cC---CeEEEEeCcHHHHHHHHHHHHHHhCCC----------EEEEECCCCH-----------------------
Confidence 12 479999999999999999998754211 1111121100
Q ss_pred CCCCCceeeccCCCCCcccccccccHHH-HhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchh
Q 004428 415 SKPSDYQILFGGNNDDNFSIGIKFTRKS-IKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADI 493 (754)
Q Consensus 415 ~KP~D~~~lF~GN~dD~FriGik~trk~-lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~ 493 (754)
+-..+. .++.+ ..++|||+||.+|. ..++.+.++||||+|.
T Consensus 228 ----------------------~~r~~~~~~~~~--g~~~IVVgTrsal~--------------~p~~~l~liVvDEeh~ 269 (679)
T PRK05580 228 ----------------------GERLDEWRKAKR--GEAKVVIGARSALF--------------LPFKNLGLIIVDEEHD 269 (679)
T ss_pred ----------------------HHHHHHHHHHHc--CCCCEEEeccHHhc--------------ccccCCCEEEEECCCc
Confidence 000011 11222 35899999998764 1377899999999997
Q ss_pred hhhcCch----HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEee
Q 004428 494 ILMQNWS----WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLAC 569 (754)
Q Consensus 494 mLmQNw~----hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~ 569 (754)
......+ |...|... |.- ..-.|.|++|||.+.+.-..+. .|+..+..
T Consensus 270 ~s~~~~~~p~y~~r~va~~----------------ra~------~~~~~~il~SATps~~s~~~~~------~g~~~~~~ 321 (679)
T PRK05580 270 SSYKQQEGPRYHARDLAVV----------------RAK------LENIPVVLGSATPSLESLANAQ------QGRYRLLR 321 (679)
T ss_pred cccccCcCCCCcHHHHHHH----------------Hhh------ccCCCEEEEcCCCCHHHHHHHh------ccceeEEE
Confidence 6522111 23333221 111 1126999999998876544432 24443321
Q ss_pred ---cccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh--cCCCcEEEEecch----------------
Q 004428 570 ---EYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD--SIQGGIMLFLSSY---------------- 628 (754)
Q Consensus 570 ---~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy---------------- 628 (754)
...+ ...+.+ ..++.... ........|-..++..+.+ ....++|||+|..
T Consensus 322 l~~r~~~---~~~p~v----~~id~~~~--~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~ 392 (679)
T PRK05580 322 LTKRAGG---ARLPEV----EIIDMREL--LRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAE 392 (679)
T ss_pred ecccccc---CCCCeE----EEEechhh--hhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccC
Confidence 1111 111111 11221110 0000000111233333333 1345788888741
Q ss_pred --------------------------------------------hcHHHHHHHHHhC--CCceEeecCCCCH--HHHHHH
Q 004428 629 --------------------------------------------FEFVRLRNFLKSQ--NASFCLLGDYTEP--SDISRA 660 (754)
Q Consensus 629 --------------------------------------------~d~vrlrn~Lk~~--~~~f~~Ihey~sq--~~r~ra 660 (754)
....++...|++. ++++..+|+++++ .++.++
T Consensus 393 C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~ 472 (679)
T PRK05580 393 CPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQL 472 (679)
T ss_pred CCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHH
Confidence 2556888889886 8999999999986 568899
Q ss_pred HHHHhcCCccEEEEcccccccCccccCCCCeEE--EccCCCCC----------CchhhhccccCCCC-CceEEE
Q 004428 661 RVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI--IYSLPERK----------EFYPEIVNMLEGSH-NMTCTV 721 (754)
Q Consensus 661 r~~F~~G~~~ILL~TErahffRr~dIkgV~~VI--fY~lP~~p----------efY~erigrt~ra~-~g~~~~ 721 (754)
+..|.+|+..|||+|++++ ||+|+++|..|+ ++|.|-+. ..|.|++||+||.+ .|.|+.
T Consensus 473 l~~f~~g~~~ILVgT~~ia--kG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 473 LAQFARGEADILIGTQMLA--KGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred HHHHhcCCCCEEEEChhhc--cCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 9999999999999999999 999999999995 55656543 34999999999976 566663
No 73
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.84 E-value=8.4e-19 Score=206.62 Aligned_cols=338 Identities=14% Similarity=0.126 Sum_probs=231.9
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccc
Q 004428 237 LKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKN 316 (754)
Q Consensus 237 L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~kn 316 (754)
|+|.+.+.+.. .|.+ |||.|.++||.+.+|+++|.+|+|| +|||.|-.||+||-|++...
T Consensus 8 l~~~v~~~~~~-----~~~~-~t~~Q~~a~~~i~~G~nvLiiAPTG---------sGKTeAAfLpil~~l~~~~~----- 67 (814)
T COG1201 8 LDPRVREWFKR-----KFTS-LTPPQRYAIPEIHSGENVLIIAPTG---------SGKTEAAFLPVINELLSLGK----- 67 (814)
T ss_pred cCHHHHHHHHH-----hcCC-CCHHHHHHHHHHhCCCceEEEcCCC---------CChHHHHHHHHHHHHHhccC-----
Confidence 56666666655 3666 8999999999999999999999999 89999999999999987510
Q ss_pred hhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcc
Q 004428 317 DTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKD 396 (754)
Q Consensus 317 n~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~ 396 (754)
. ....+..||.+.|.|.|+..|-..|...+...+ +.|
T Consensus 68 ------------------~----~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G-~~v-------------------- 104 (814)
T COG1201 68 ------------------G----KLEDGIYALYISPLKALNNDIRRRLEEPLRELG-IEV-------------------- 104 (814)
T ss_pred ------------------C----CCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcC-Ccc--------------------
Confidence 0 112357899999999999999999988754221 111
Q ss_pred cchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccC
Q 004428 397 DDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQD 476 (754)
Q Consensus 397 ~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd 476 (754)
++-.|.+.+.+| +++++ .-+||+|-||--|--++... +-
T Consensus 105 -------------------------~vRhGDT~~~er------~r~~~-----~PPdILiTTPEsL~lll~~~-----~~ 143 (814)
T COG1201 105 -------------------------AVRHGDTPQSEK------QKMLK-----NPPHILITTPESLAILLNSP-----KF 143 (814)
T ss_pred -------------------------ceecCCCChHHh------hhccC-----CCCcEEEeChhHHHHHhcCH-----HH
Confidence 111222222211 22232 45999999999999988631 23
Q ss_pred cccCCceeEEEEecchhhhhcC-chHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHH
Q 004428 477 VDYLSSIEVLIIDHADIILMQN-WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFN 555 (754)
Q Consensus 477 ~dfLSSIEiLVlDeAD~mLmQN-w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~ 555 (754)
-.+|+.|..+||||.+.|..-- --||.--++-|..+ .| -=|.|.+|||..|... ..
T Consensus 144 r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l-----------------~~----~~qRIGLSATV~~~~~--va 200 (814)
T COG1201 144 RELLRDVRYVIVDEIHALAESKRGVQLALSLERLREL-----------------AG----DFQRIGLSATVGPPEE--VA 200 (814)
T ss_pred HHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhh-----------------Cc----ccEEEeehhccCCHHH--HH
Confidence 3479999999999999987321 12343333333221 11 2599999999985532 23
Q ss_pred HhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHH
Q 004428 556 HHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLR 635 (754)
Q Consensus 556 ~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlr 635 (754)
+|+.-..+.+.|.....+ .+..- =...+....... +.=..+-...|...+. ....||||+||.+...+|.
T Consensus 201 rfL~g~~~~~~Iv~~~~~------k~~~i-~v~~p~~~~~~~-~~~~~~~~~~i~~~v~--~~~ttLIF~NTR~~aE~l~ 270 (814)
T COG1201 201 KFLVGFGDPCEIVDVSAA------KKLEI-KVISPVEDLIYD-EELWAALYERIAELVK--KHRTTLIFTNTRSGAERLA 270 (814)
T ss_pred HHhcCCCCceEEEEcccC------CcceE-EEEecCCccccc-cchhHHHHHHHHHHHh--hcCcEEEEEeChHHHHHHH
Confidence 455543223333322100 00100 000111110000 0000111122222222 2348999999999999999
Q ss_pred HHHHhCC-CceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCC
Q 004428 636 NFLKSQN-ASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEG 713 (754)
Q Consensus 636 n~Lk~~~-~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~r 713 (754)
..|++.+ .....=|+.++..+|..+=..|++|+.+.+|||==.- =|+||-+|..||.|+-|...--...||||.|.
T Consensus 271 ~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLE--LGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgH 347 (814)
T COG1201 271 FRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLE--LGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGH 347 (814)
T ss_pred HHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchh--hccccCCceEEEEeCCcHHHHHHhHhcccccc
Confidence 9999987 8899999999999999999999999999999999999 99999999999999999999989999998873
No 74
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=9.3e-18 Score=198.62 Aligned_cols=125 Identities=15% Similarity=0.051 Sum_probs=102.3
Q ss_pred cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC--------
Q 004428 616 SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR-------- 687 (754)
Q Consensus 616 ~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk-------- 687 (754)
....++||||.|......|..+|++.+++...||+...++++..+..+|+.|. |+|||++|. ||.||+
T Consensus 442 ~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAG--RGtDI~Lggn~~~~ 517 (896)
T PRK13104 442 VRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAG--RGTDIVLGGSLAAD 517 (896)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCcc--CCcceecCCchhhh
Confidence 35678999999999999999999999999999999999999999999999994 999999999 999998
Q ss_pred ------------------------------CCCeEEEccCCCCCCchhhhccccCCCCC-ceEEEEechhcHHHHHHHhC
Q 004428 688 ------------------------------GIQNLIIYSLPERKEFYPEIVNMLEGSHN-MTCTVLFSRFDMLRLERIVG 736 (754)
Q Consensus 688 ------------------------------gV~~VIfY~lP~~pefY~erigrt~ra~~-g~~~~L~sk~D~~~LErIVG 736 (754)
|==|||--..|++--.=..+-||.||-|+ |++.-+.|-.|-+ =|+.|
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l--~~~f~ 595 (896)
T PRK13104 518 LANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNL--MRIFA 595 (896)
T ss_pred hhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH--HHHhC
Confidence 34477777777654444444577888774 7777777766633 25688
Q ss_pred chHHHHhhhc
Q 004428 737 SAHAKKMVKS 746 (754)
Q Consensus 737 t~ra~~m~~s 746 (754)
.++..+|+..
T Consensus 596 ~~~~~~~~~~ 605 (896)
T PRK13104 596 SERVASMMRR 605 (896)
T ss_pred hHHHHHHHHH
Confidence 8888888753
No 75
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=8.1e-17 Score=190.71 Aligned_cols=122 Identities=14% Similarity=0.083 Sum_probs=96.8
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ccEEEEcccccccCccccC--------
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RKMILYTERSHFYHRYKIR-------- 687 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~ILL~TErahffRr~dIk-------- 687 (754)
...++||-+.|-..-..|.+.|++.+++...++.-.. ++...+- =..|+ -.|.|||-.|. ||-||+
T Consensus 567 ~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~--~~Ea~ii-a~AG~~g~VTIATNmAG--RGTDIkl~~~v~~~ 641 (970)
T PRK12899 567 KGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH--AQEAEII-AGAGKLGAVTVATNMAG--RGTDIKLDEEAVAV 641 (970)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh--hhHHHHH-HhcCCCCcEEEeecccc--CCcccccCchHHhc
Confidence 4468999999999999999999999999888887432 3222221 13465 58999999999 999997
Q ss_pred CCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 688 GIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 688 gV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
|==|||--..|++.-.-..+.||+||-| .|++.-++|-.|-+ =|+.|..+..+|+.
T Consensus 642 GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDdL--~~~f~~~~i~~~~~ 698 (970)
T PRK12899 642 GGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRL--MRLFASPKLNTLIR 698 (970)
T ss_pred CCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchHH--HHHhCcHHHHHHHH
Confidence 4559999999999888888899999988 58888888877633 25588888887765
No 76
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.78 E-value=3.6e-17 Score=197.05 Aligned_cols=101 Identities=11% Similarity=0.199 Sum_probs=94.3
Q ss_pred CCCcEEEEecchhcHHHHHHHHH-hCCCceEeecCCCCHHHHHHHHHHHhcC--CccEEEEcccccccCccccCCCCeEE
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLK-SQNASFCLLGDYTEPSDISRARVWFFEG--KRKMILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk-~~~~~f~~Ihey~sq~~r~rar~~F~~G--~~~ILL~TErahffRr~dIkgV~~VI 693 (754)
...++||||++...+..|...|+ ..|+.++.|||.+++.+|.++...|+++ .++|||+||++. ||+++..++|||
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs--eGlNlq~a~~VI 569 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS--EGRNFQFASHLV 569 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc--cCCCcccccEEE
Confidence 46799999999999999999994 6799999999999999999999999985 599999999999 999999999999
Q ss_pred EccCCCCCCchhhhccccCCCC-CceE
Q 004428 694 IYSLPERKEFYPEIVNMLEGSH-NMTC 719 (754)
Q Consensus 694 fY~lP~~pefY~erigrt~ra~-~g~~ 719 (754)
|||+|.+|+.|.|||||++|.| .+.|
T Consensus 570 nfDlP~nP~~~eQRIGR~~RiGQ~~~V 596 (956)
T PRK04914 570 LFDLPFNPDLLEQRIGRLDRIGQKHDI 596 (956)
T ss_pred EecCCCCHHHHHHHhcccccCCCCceE
Confidence 9999999999999999999988 3443
No 77
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.76 E-value=3.4e-17 Score=156.96 Aligned_cols=167 Identities=20% Similarity=0.312 Sum_probs=126.2
Q ss_pred CHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccc
Q 004428 259 SSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFL 338 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~R 338 (754)
||.|.++++.+.+++|++..+.|| +|||.+|++++++++.+.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptG---------sGKT~~~~~~~l~~~~~~----------------------------- 42 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTG---------SGKTLAYILPALNRLQEG----------------------------- 42 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTT---------SSHHHHHHHHHHHHHHTT-----------------------------
T ss_pred CHHHHHHHHHHHcCCCEEEECCCC---------CccHHHHHHHHHhhhccC-----------------------------
Confidence 799999999999999999999998 899999999999999754
Q ss_pred cCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCC
Q 004428 339 DRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPS 418 (754)
Q Consensus 339 DQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~ 418 (754)
...++||++||++||.|+.+.+..+..... .+....+|+.
T Consensus 43 ----~~~~~lii~P~~~l~~q~~~~~~~~~~~~~-------~~~~~~~~~~----------------------------- 82 (169)
T PF00270_consen 43 ----KDARVLIIVPTRALAEQQFERLRKFFSNTN-------VRVVLLHGGQ----------------------------- 82 (169)
T ss_dssp ----SSSEEEEEESSHHHHHHHHHHHHHHTTTTT-------SSEEEESTTS-----------------------------
T ss_pred ----CCceEEEEeecccccccccccccccccccc-------cccccccccc-----------------------------
Confidence 124899999999999999999998865421 1111122221
Q ss_pred CceeeccCCCCCccccccccc-HHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhh-
Q 004428 419 DYQILFGGNNDDNFSIGIKFT-RKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILM- 496 (754)
Q Consensus 419 D~~~lF~GN~dD~FriGik~t-rk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm- 496 (754)
... .....+ . ..++|||+||..|..++.. ... +++++.++|+||+|.+..
T Consensus 83 ------------------~~~~~~~~~~-~--~~~~ilv~T~~~l~~~~~~------~~~-~~~~~~~iViDE~h~l~~~ 134 (169)
T PF00270_consen 83 ------------------SISEDQREVL-S--NQADILVTTPEQLLDLISN------GKI-NISRLSLIVIDEAHHLSDE 134 (169)
T ss_dssp ------------------CHHHHHHHHH-H--TTSSEEEEEHHHHHHHHHT------TSS-TGTTESEEEEETHHHHHHT
T ss_pred ------------------cccccccccc-c--ccccccccCcchhhccccc------ccc-ccccceeeccCcccccccc
Confidence 111 111122 1 4699999999999999873 123 456699999999999985
Q ss_pred cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHH
Q 004428 497 QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAF 553 (754)
Q Consensus 497 QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL 553 (754)
+.+..+..|+..+...+. .|.+++|||+++.++.|
T Consensus 135 ~~~~~~~~i~~~~~~~~~----------------------~~~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 135 TFRAMLKSILRRLKRFKN----------------------IQIILLSATLPSNVEKL 169 (169)
T ss_dssp THHHHHHHHHHHSHTTTT----------------------SEEEEEESSSTHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCC----------------------CcEEEEeeCCChhHhhC
Confidence 557778888887654432 57999999999887754
No 78
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.75 E-value=3e-16 Score=179.83 Aligned_cols=335 Identities=14% Similarity=0.139 Sum_probs=229.2
Q ss_pred HHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhh
Q 004428 243 KHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAK 322 (754)
Q Consensus 243 ~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~ 322 (754)
..+...+ |+.. .-|-|+++|..+++++|+++.=+|| .||-..|-||+|=-
T Consensus 7 ~~L~~~f---Gy~~-FR~gQ~evI~~~l~g~d~lvvmPTG---------gGKSlCyQiPAll~----------------- 56 (590)
T COG0514 7 QVLKQVF---GYAS-FRPGQQEIIDALLSGKDTLVVMPTG---------GGKSLCYQIPALLL----------------- 56 (590)
T ss_pred HHHHHHh---Cccc-cCCCHHHHHHHHHcCCcEEEEccCC---------CCcchHhhhHHHhc-----------------
Confidence 4455554 6665 3578999999999999999999998 78999999998521
Q ss_pred hccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhh
Q 004428 323 NKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQ 402 (754)
Q Consensus 323 ~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~ 402 (754)
.| -+||+.|.-.|-..=|..+...+-..- |--...
T Consensus 57 -----------------~G----~TLVVSPLiSLM~DQV~~l~~~Gi~A~-------------~lnS~l----------- 91 (590)
T COG0514 57 -----------------EG----LTLVVSPLISLMKDQVDQLEAAGIRAA-------------YLNSTL----------- 91 (590)
T ss_pred -----------------CC----CEEEECchHHHHHHHHHHHHHcCceee-------------hhhccc-----------
Confidence 24 269999999998888888887642110 100000
Q ss_pred cccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCc
Q 004428 403 NIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSS 482 (754)
Q Consensus 403 ~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSS 482 (754)
..+.++.+ ..++. ...-+|+.-||=||..--= ....--..
T Consensus 92 -------------~~~e~~~v----------------~~~l~----~g~~klLyisPErl~~~~f-------~~~L~~~~ 131 (590)
T COG0514 92 -------------SREERQQV----------------LNQLK----SGQLKLLYISPERLMSPRF-------LELLKRLP 131 (590)
T ss_pred -------------CHHHHHHH----------------HHHHh----cCceeEEEECchhhcChHH-------HHHHHhCC
Confidence 00000000 01121 1236899999999875200 01111346
Q ss_pred eeEEEEecchhhhhcCchH-----HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHH-
Q 004428 483 IEVLIIDHADIILMQNWSW-----LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNH- 556 (754)
Q Consensus 483 IEiLVlDeAD~mLmQNw~h-----v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~- 556 (754)
|-++||||||-+. .|.| ...+-......|. =-.|.|+||-+|.+..-+..
T Consensus 132 i~l~vIDEAHCiS--qWGhdFRP~Y~~lg~l~~~~~~----------------------~p~~AlTATA~~~v~~DI~~~ 187 (590)
T COG0514 132 ISLVAIDEAHCIS--QWGHDFRPDYRRLGRLRAGLPN----------------------PPVLALTATATPRVRDDIREQ 187 (590)
T ss_pred CceEEechHHHHh--hcCCccCHhHHHHHHHHhhCCC----------------------CCEEEEeCCCChHHHHHHHHH
Confidence 7899999999877 3754 3333333322331 24799999999997755444
Q ss_pred hhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHH
Q 004428 557 HCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRN 636 (754)
Q Consensus 557 ~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn 636 (754)
.+.+.+..++.... -+.+++.+.... ..-.++. |+.. +.....+..||||.|..++.+|..
T Consensus 188 L~l~~~~~~~~sfd-----------RpNi~~~v~~~~---~~~~q~~-fi~~----~~~~~~~~GIIYc~sRk~~E~ia~ 248 (590)
T COG0514 188 LGLQDANIFRGSFD-----------RPNLALKVVEKG---EPSDQLA-FLAT----VLPQLSKSGIIYCLTRKKVEELAE 248 (590)
T ss_pred hcCCCcceEEecCC-----------Cchhhhhhhhcc---cHHHHHH-HHHh----hccccCCCeEEEEeeHHhHHHHHH
Confidence 33343222222111 111222222110 1122332 3332 123345678999999999999999
Q ss_pred HHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-
Q 004428 637 FLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH- 715 (754)
Q Consensus 637 ~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~- 715 (754)
+|..+|+++..-|+.++..+|.+..++|.+++.+|||||=-|. =|+|-++|+.||+|++|.+.+-|..=+||.||.|
T Consensus 249 ~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFG--MGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~ 326 (590)
T COG0514 249 WLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFG--MGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGL 326 (590)
T ss_pred HHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccc--CccCCCCceEEEEecCCCCHHHHHHHHhhccCCCC
Confidence 9999999999999999999999999999999999999998766 9999999999999999999999999999999998
Q ss_pred CceEEEEechhcHHHHHHHhCc
Q 004428 716 NMTCTVLFSRFDMLRLERIVGS 737 (754)
Q Consensus 716 ~g~~~~L~sk~D~~~LErIVGt 737 (754)
..-|+.||++.|..-++.+.-.
T Consensus 327 ~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 327 PAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred cceEEEeeccccHHHHHHHHHh
Confidence 5789999999997666555444
No 79
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=4.9e-16 Score=177.37 Aligned_cols=89 Identities=8% Similarity=-0.000 Sum_probs=76.2
Q ss_pred HHHHHHHHHhC--CCceEeecCCCCHHHH--HHHHHHHhcCCccEEEEcccccccCccccCCCCeEE--EccCCCC-CC-
Q 004428 631 FVRLRNFLKSQ--NASFCLLGDYTEPSDI--SRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI--IYSLPER-KE- 702 (754)
Q Consensus 631 ~vrlrn~Lk~~--~~~f~~Ihey~sq~~r--~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI--fY~lP~~-pe- 702 (754)
..++...|++. ++++..+|.+++++++ .+.+..|.+|+..|||.|+.++ ||+|+++|..|+ ++|.+-+ |+
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~--kG~d~~~v~lV~vl~aD~~l~~pd~ 348 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIA--KGHHFPNVTLVGVLDADSGLHSPDF 348 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccc--cCCCCCcccEEEEEcCcccccCccc
Confidence 58889999987 8999999999988776 8899999999999999999999 999999999994 7775443 33
Q ss_pred --------chhhhccccCCCC-CceEEE
Q 004428 703 --------FYPEIVNMLEGSH-NMTCTV 721 (754)
Q Consensus 703 --------fY~erigrt~ra~-~g~~~~ 721 (754)
.|.+++||+||++ .|.++.
T Consensus 349 ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 349 RAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred chHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 4899999999976 576663
No 80
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=2.3e-15 Score=178.13 Aligned_cols=138 Identities=14% Similarity=0.090 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHhHHhhh--cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc
Q 004428 598 DDARLEYFTKKVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT 675 (754)
Q Consensus 598 ~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T 675 (754)
...++...+. .+.. ....++||||.|..+...|..+|++.+++...||+ .|.+|..++..|..|...|+|||
T Consensus 412 ~~~K~~aI~~----~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLna--kq~eREa~Iia~Ag~~g~VtIAT 485 (830)
T PRK12904 412 EKEKFDAVVE----DIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNA--KNHEREAEIIAQAGRPGAVTIAT 485 (830)
T ss_pred HHHHHHHHHH----HHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccC--chHHHHHHHHHhcCCCceEEEec
Confidence 3456664433 3332 34568999999999999999999999999999999 49999999999999999999999
Q ss_pred ccccccCccccCC--------------------------------------CCeEEEccCCCCCCchhhhccccCCCCC-
Q 004428 676 ERSHFYHRYKIRG--------------------------------------IQNLIIYSLPERKEFYPEIVNMLEGSHN- 716 (754)
Q Consensus 676 ErahffRr~dIkg--------------------------------------V~~VIfY~lP~~pefY~erigrt~ra~~- 716 (754)
+.|. ||.||+= ==|||--..|++--.=-.+-||+||-|+
T Consensus 486 NmAG--RGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdp 563 (830)
T PRK12904 486 NMAG--RGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDP 563 (830)
T ss_pred cccc--CCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCC
Confidence 9999 9999873 3489988889877766777799999884
Q ss_pred ceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 717 MTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 717 g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
|++.-+.|-.|-+. ++.|.++..+|+.
T Consensus 564 Gss~f~lSleD~l~--~~f~~~~~~~~~~ 590 (830)
T PRK12904 564 GSSRFYLSLEDDLM--RIFGSDRVKGMMD 590 (830)
T ss_pred CceeEEEEcCcHHH--HhhchHHHHHHHH
Confidence 77777777666332 4567777776654
No 81
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.69 E-value=4.2e-15 Score=176.45 Aligned_cols=331 Identities=16% Similarity=0.136 Sum_probs=219.4
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
.++.++.-|+|..+++.+..+++||.|++|| +|||....|=|++.+.+.
T Consensus 27 ~~~~el~~~qq~av~~~~~~~~N~li~aPTg---------sGKTlIA~lai~~~l~~~---------------------- 75 (766)
T COG1204 27 DGIDELFNPQQEAVEKGLLSDENVLISAPTG---------SGKTLIALLAILSTLLEG---------------------- 75 (766)
T ss_pred CChHHhhHHHHHHhhccccCCCcEEEEcCCC---------CchHHHHHHHHHHHHHhc----------------------
Confidence 4554455689999999999999999999998 899999999999999753
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
+-||+.|||||.||.++++.+.++....-+ ..
T Consensus 76 ------------~~k~vYivPlkALa~Ek~~~~~~~~~~Gir--------V~---------------------------- 107 (766)
T COG1204 76 ------------GGKVVYIVPLKALAEEKYEEFSRLEELGIR--------VG---------------------------- 107 (766)
T ss_pred ------------CCcEEEEeChHHHHHHHHHHhhhHHhcCCE--------EE----------------------------
Confidence 236899999999999999999966443321 11
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
+..|+.++++ ..+ ...||||+||=.+=-++.+ ..+++..|.+|||||+
T Consensus 108 -----------~~TgD~~~~~--------~~l------~~~~ViVtT~EK~Dsl~R~-------~~~~~~~V~lvViDEi 155 (766)
T COG1204 108 -----------ISTGDYDLDD--------ERL------ARYDVIVTTPEKLDSLTRK-------RPSWIEEVDLVVIDEI 155 (766)
T ss_pred -----------EecCCcccch--------hhh------ccCCEEEEchHHhhHhhhc-------CcchhhcccEEEEeee
Confidence 1122222211 111 3689999999998777652 3447889999999999
Q ss_pred hhhhhc--CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC--HHHHHHHHHhhcCCCceEEE
Q 004428 492 DIILMQ--NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN--PEINAFFNHHCANYQGKVKL 567 (754)
Q Consensus 492 D~mLmQ--Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~--peinsL~~~~~~N~~G~Vkv 567 (754)
|.+..- .| -++.|...+ |.-.. .=|.+-+|||++ .++-.+.+- ....+.++-
T Consensus 156 H~l~d~~RG~-~lE~iv~r~---------------~~~~~------~~rivgLSATlpN~~evA~wL~a--~~~~~~~rp 211 (766)
T COG1204 156 HLLGDRTRGP-VLESIVARM---------------RRLNE------LIRIVGLSATLPNAEEVADWLNA--KLVESDWRP 211 (766)
T ss_pred eecCCcccCc-eehhHHHHH---------------HhhCc------ceEEEEEeeecCCHHHHHHHhCC--cccccCCCC
Confidence 998743 22 244444332 21111 137899999997 233333221 111111111
Q ss_pred eecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHh-------
Q 004428 568 ACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKS------- 640 (754)
Q Consensus 568 ~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~------- 640 (754)
.+-..+ ....|.|.-.....+ ..+..+-+.....++..+. ..+++||||+|.......++.|..
T Consensus 212 ~~l~~~------v~~~~~~~~~~~~~k-~~~~~~~~~~~~~v~~~~~--~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~ 282 (766)
T COG1204 212 VPLRRG------VPYVGAFLGADGKKK-TWPLLIDNLALELVLESLA--EGGQVLVFVHSRKEAEKTAKKLRIKMSATLS 282 (766)
T ss_pred cccccC------CccceEEEEecCccc-cccccchHHHHHHHHHHHh--cCCeEEEEEecCchHHHHHHHHHHHHhhcCC
Confidence 111111 124455555443322 2222333333344555443 467999999999999999998873
Q ss_pred --C------CC-c---------------------eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCC--
Q 004428 641 --Q------NA-S---------------------FCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRG-- 688 (754)
Q Consensus 641 --~------~~-~---------------------f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkg-- 688 (754)
. +. + ++.=|..++..+|.-.=..|+.|.++||++|=-++ .|-..+.
T Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA--~GVNLPA~~ 360 (766)
T COG1204 283 DDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLA--AGVNLPART 360 (766)
T ss_pred hhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHh--hhcCCcceE
Confidence 0 01 1 11236778889999999999999999999999998 9988776
Q ss_pred --CCeEEEcc-----CCCCCCchhhhccccCCCC---CceEEEEe-chhcH
Q 004428 689 --IQNLIIYS-----LPERKEFYPEIVNMLEGSH---NMTCTVLF-SRFDM 728 (754)
Q Consensus 689 --V~~VIfY~-----lP~~pefY~erigrt~ra~---~g~~~~L~-sk~D~ 728 (754)
|+....|+ -|-++-.|..|.||.||.+ .|-++.+. +.++.
T Consensus 361 VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~ 411 (766)
T COG1204 361 VIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDEL 411 (766)
T ss_pred EEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCccch
Confidence 55666788 7778888999999999987 34444433 44443
No 82
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.68 E-value=4.5e-14 Score=157.33 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=100.0
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceE--eec-------CCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFC--LLG-------DYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR 687 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~--~Ih-------ey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk 687 (754)
...++|||+.-..-+..|.++|.+.+.+.. -|. ..|+|++....+..|+.|+.+|||||-++- -|+||+
T Consensus 365 ~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgE--EGLDIp 442 (542)
T COG1111 365 GDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGE--EGLDIP 442 (542)
T ss_pred CCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEccccc--ccCCCC
Confidence 457999999999999999999999988773 232 459999999999999999999999999999 999999
Q ss_pred CCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechh
Q 004428 688 GIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRF 726 (754)
Q Consensus 688 gV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~ 726 (754)
.|+.||||++=.++.=++.|.|||||...|.+++|+++.
T Consensus 443 ~vDlVifYEpvpSeIR~IQR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 443 EVDLVIFYEPVPSEIRSIQRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred cccEEEEecCCcHHHHHHHhhCccccCCCCeEEEEEecC
Confidence 999999999999999999999999999999999999977
No 83
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=9.6e-15 Score=173.01 Aligned_cols=124 Identities=13% Similarity=0.034 Sum_probs=104.8
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC---------
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR--------- 687 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk--------- 687 (754)
...++||||.|......|..+|++.+++...||+...++++..+...|+.|. |+|||+.|. ||.||+
T Consensus 448 ~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAG--RGTDIkLggn~~~~~ 523 (908)
T PRK13107 448 RGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAG--RGTDIVLGGNWNMEI 523 (908)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcC--CCcceecCCchHHhh
Confidence 4578999999999999999999999999999999999999999999999998 999999999 999998
Q ss_pred ----------------------------CCCeEEEccCCCCCCchhhhccccCCCCC-ceEEEEechhcHHHHHHHhCch
Q 004428 688 ----------------------------GIQNLIIYSLPERKEFYPEIVNMLEGSHN-MTCTVLFSRFDMLRLERIVGSA 738 (754)
Q Consensus 688 ----------------------------gV~~VIfY~lP~~pefY~erigrt~ra~~-g~~~~L~sk~D~~~LErIVGt~ 738 (754)
|==|||--..|++--.=..+-||.||-|+ |++.-++|-.|-+. |+.|..
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~--r~f~~~ 601 (908)
T PRK13107 524 EALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLM--RIFASD 601 (908)
T ss_pred hhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHH--HHhChH
Confidence 45588888888765555555688888774 77777777666432 668888
Q ss_pred HHHHhhhc
Q 004428 739 HAKKMVKS 746 (754)
Q Consensus 739 ra~~m~~s 746 (754)
+..+|+..
T Consensus 602 ~~~~~~~~ 609 (908)
T PRK13107 602 RVSGMMKK 609 (908)
T ss_pred HHHHHHHH
Confidence 88888753
No 84
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=9.7e-15 Score=171.61 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=88.1
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC-CccEEEEcccccccCccccCCCCeEEEc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEG-KRKMILYTERSHFYHRYKIRGIQNLIIY 695 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G-~~~ILL~TErahffRr~dIkgV~~VIfY 695 (754)
...++||||.+......+...| + +..|||.+++.+|.+.+..|++| .+++||+|+++. +|+||+++++||++
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgd--eGIDlP~a~vvI~~ 567 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGD--TSIDLPEANVLIQI 567 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccc--cccCCCCCCEEEEe
Confidence 4579999998877766666665 3 34599999999999999999976 789999999999 99999999999999
Q ss_pred cCCC-CCCchhhhccccCCCC-CceE-------EEEechhc
Q 004428 696 SLPE-RKEFYPEIVNMLEGSH-NMTC-------TVLFSRFD 727 (754)
Q Consensus 696 ~lP~-~pefY~erigrt~ra~-~g~~-------~~L~sk~D 727 (754)
+.|. ++..|+||+||++|.+ .+.+ ++|+++..
T Consensus 568 s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 568 SSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred CCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 9984 9999999999999986 3333 66776543
No 85
>PRK09694 helicase Cas3; Provisional
Probab=99.63 E-value=2.5e-14 Score=171.68 Aligned_cols=333 Identities=16% Similarity=0.168 Sum_probs=194.2
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|+|+|+.+..+.....=++..+.|| +|||.|.++.+. +++..
T Consensus 287 p~p~Q~~~~~~~~~pgl~ileApTG---------sGKTEAAL~~A~-~l~~~---------------------------- 328 (878)
T PRK09694 287 PRQLQTLVDALPLQPGLTIIEAPTG---------SGKTEAALAYAW-RLIDQ---------------------------- 328 (878)
T ss_pred ChHHHHHHHhhccCCCeEEEEeCCC---------CCHHHHHHHHHH-HHHHh----------------------------
Confidence 8999998866544455577889998 899999655443 44421
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCc---cccccccc-ccccccccCCCccccCcccchhhhcccccccCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPD---AHKVNVEH-IDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQ 413 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~---~~~~~v~n-k~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~ 413 (754)
| ...++++.+||+.+|.++.+.+.++... ...+.+.+ +.++...|
T Consensus 329 ---~-~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~--------------------------- 377 (878)
T PRK09694 329 ---G-LADSIIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLF--------------------------- 377 (878)
T ss_pred ---C-CCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhh---------------------------
Confidence 1 1347999999999999999998763211 00011111 11111111
Q ss_pred CCCCCCceeeccCC-CCC-cccccccccHHHHhhhc----ccCCCCEEEeCchhHHHHHhhhhcccccCcccCCc----e
Q 004428 414 KSKPSDYQILFGGN-NDD-NFSIGIKFTRKSIKLYN----DFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSS----I 483 (754)
Q Consensus 414 ~~KP~D~~~lF~GN-~dD-~FriGik~trk~lkLys----~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSS----I 483 (754)
..+..+. .++ .-.-++ ..-..++ .+.-++|+|+|+==|.+.+=. ....||.. =
T Consensus 378 -------~~~~~~~~~~~~~~~~~~----~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~------~kh~~lR~~~La~ 440 (878)
T PRK09694 378 -------QSLKSRAATEQGQEEAWV----QCCEWLSQSNKRVFLGQIGVCTIDQVLISVLP------VKHRFIRGFGLGR 440 (878)
T ss_pred -------hhhhcccccccccchhhh----HHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHc------cchHHHHHHhhcc
Confidence 1110000 000 000000 0001111 112389999999877764421 11223332 3
Q ss_pred eEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHH-HHHHhhcCCC
Q 004428 484 EVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINA-FFNHHCANYQ 562 (754)
Q Consensus 484 EiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peins-L~~~~~~N~~ 562 (754)
.+|||||+|.+-.--+..+..+++.+.. +.-..|++|||+|+.+.. |...+ .
T Consensus 441 svvIiDEVHAyD~ym~~lL~~~L~~l~~-----------------------~g~~vIllSATLP~~~r~~L~~a~----~ 493 (878)
T PRK09694 441 SVLIVDEVHAYDAYMYGLLEAVLKAQAQ-----------------------AGGSVILLSATLPATLKQKLLDTY----G 493 (878)
T ss_pred CeEEEechhhCCHHHHHHHHHHHHHHHh-----------------------cCCcEEEEeCCCCHHHHHHHHHHh----c
Confidence 5899999999853223455555554321 224589999999998764 44433 1
Q ss_pred ce--EEEeecccCc-------ccccc-------cceeEE--EEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEE
Q 004428 563 GK--VKLACEYKGV-------LPKVL-------LNVRQI--YERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLF 624 (754)
Q Consensus 563 G~--Vkv~~~~~g~-------i~~v~-------~~I~Q~--f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIF 624 (754)
|. +.....|+.+ ..... ...+.. +........ ...+. ++..++..+ ...+.+|||
T Consensus 494 ~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~-~~~~~----~l~~i~~~~--~~g~~vLVf 566 (878)
T PRK09694 494 GHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADM-LPDLT----LLQRMIAAA--NAGAQVCLI 566 (878)
T ss_pred cccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccc-cCHHH----HHHHHHHHH--hcCCEEEEE
Confidence 11 1111111100 00000 001111 111100000 01111 122233222 235689999
Q ss_pred ecchhcHHHHHHHHHhCC---CceEeecCCCCHHHH----HHHHHHH-hcCCc---cEEEEcccccccCccccCCCCeEE
Q 004428 625 LSSYFEFVRLRNFLKSQN---ASFCLLGDYTEPSDI----SRARVWF-FEGKR---KMILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 625 v~Sy~d~vrlrn~Lk~~~---~~f~~Ihey~sq~~r----~rar~~F-~~G~~---~ILL~TErahffRr~dIkgV~~VI 693 (754)
||+..++..+.+.|++.. ..+..+|+-+++.+| .+.++.| ++|+. +|||+|.++. +|+|| +++.||
T Consensus 567 ~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE--~GLDI-d~DvlI 643 (878)
T PRK09694 567 CNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVE--QSLDL-DFDWLI 643 (878)
T ss_pred ECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchh--heeec-CCCeEE
Confidence 999999999999999764 689999999999999 4578889 77764 7999999999 99999 799999
Q ss_pred EccCCCCCCchhhhccccCCCC
Q 004428 694 IYSLPERKEFYPEIVNMLEGSH 715 (754)
Q Consensus 694 fY~lP~~pefY~erigrt~ra~ 715 (754)
.+..| .+.|++|+||++|.+
T Consensus 644 tdlaP--idsLiQRaGR~~R~~ 663 (878)
T PRK09694 644 TQLCP--VDLLFQRLGRLHRHH 663 (878)
T ss_pred ECCCC--HHHHHHHHhccCCCC
Confidence 99888 569999999999864
No 86
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.60 E-value=5.3e-14 Score=168.99 Aligned_cols=329 Identities=16% Similarity=0.154 Sum_probs=219.3
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
.|... +=+.|.+++-.+.+|+||+.+..|| +|||.+|+||||+|+++.+.
T Consensus 66 ~g~~~-lY~HQ~~A~~~~~~G~~vvVtTgTg---------SGKTe~FllPIld~~l~~~~-------------------- 115 (851)
T COG1205 66 AGIER-LYSHQVDALRLIREGRNVVVTTGTG---------SGKTESFLLPILDHLLRDPS-------------------- 115 (851)
T ss_pred hcccc-ccHHHHHHHHHHHCCCCEEEECCCC---------CchhHHHHHHHHHHHhhCcC--------------------
Confidence 36555 4469999999999999999999988 89999999999999987521
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
-++|+|-||+.||..=++.|.++...... +-+| ..|.|+.
T Consensus 116 -------------a~AL~lYPtnALa~DQ~~rl~~~~~~~~~-----~v~~-~~y~Gdt--------------------- 155 (851)
T COG1205 116 -------------ARALLLYPTNALANDQAERLRELISDLPG-----KVTF-GRYTGDT--------------------- 155 (851)
T ss_pred -------------ccEEEEechhhhHhhHHHHHHHHHHhCCC-----ccee-eeecCCC---------------------
Confidence 17899999999999999999988644320 1122 2343331
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
+| +++ ..+|. ..+|||+.+|==|..+|-.. ..+-..+++.+++||+||+
T Consensus 156 ----~~---------------------~~r-~~~~~--~pp~IllTNpdMLh~~llr~---~~~~~~~~~~Lk~lVvDEl 204 (851)
T COG1205 156 ----PP---------------------EER-RAIIR--NPPDILLTNPDMLHYLLLRN---HDAWLWLLRNLKYLVVDEL 204 (851)
T ss_pred ----Ch---------------------HHH-HHHHh--CCCCEEEeCHHHHHHHhccC---cchHHHHHhcCcEEEEecc
Confidence 11 111 13444 47999999999888844321 2234456899999999999
Q ss_pred hhhhhcCchHHHHHHHHh----ccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEE
Q 004428 492 DIILMQNWSWLIEVVEQL----NRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKL 567 (754)
Q Consensus 492 D~mLmQNw~hv~~Il~~L----n~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv 567 (754)
|..-=-+-.||--|+.-| +..+. -.|.|..|||..-. ...+..+..-.. .+-+
T Consensus 205 HtYrGv~GS~vA~llRRL~~~~~~~~~---------------------~~q~i~~SAT~~np-~e~~~~l~~~~f-~~~v 261 (851)
T COG1205 205 HTYRGVQGSEVALLLRRLLRRLRRYGS---------------------PLQIICTSATLANP-GEFAEELFGRDF-EVPV 261 (851)
T ss_pred eeccccchhHHHHHHHHHHHHHhccCC---------------------CceEEEEeccccCh-HHHHHHhcCCcc-eeec
Confidence 988522235666666554 32222 27999999998632 122222222111 1111
Q ss_pred eecccCcccccccceeEEEEEeccCcccch---hHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHH----HHHHh
Q 004428 568 ACEYKGVLPKVLLNVRQIYERFNADSIAKA---DDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLR----NFLKS 640 (754)
Q Consensus 568 ~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~---~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlr----n~Lk~ 640 (754)
.. .| .+.=...|.+.+....... ..+.+ .....+...+. ...-++|+|+.|...+.++. ..+..
T Consensus 262 ~~--~g-----~~~~~~~~~~~~p~~~~~~~~~r~s~~-~~~~~~~~~~~-~~~~~tL~F~~sr~~~e~~~~~~~~~~~~ 332 (851)
T COG1205 262 DE--DG-----SPRGLRYFVRREPPIRELAESIRRSAL-AELATLAALLV-RNGIQTLVFFRSRKQVELLYLSPRRRLVR 332 (851)
T ss_pred cC--CC-----CCCCceEEEEeCCcchhhhhhcccchH-HHHHHHHHHHH-HcCceEEEEEehhhhhhhhhhchhHHHhh
Confidence 11 11 1111222333222100000 00011 11122222222 24568999999999988884 44444
Q ss_pred CC----CceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC-CCCchhhhccccCCCC
Q 004428 641 QN----ASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE-RKEFYPEIVNMLEGSH 715 (754)
Q Consensus 641 ~~----~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~-~pefY~erigrt~ra~ 715 (754)
.+ .....-++.+...+|.+....|++|+..++++|-.++ =|+||-++.-||+++.|. ...-+.-+.||+||.+
T Consensus 333 ~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Ale--lgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~ 410 (851)
T COG1205 333 EGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALE--LGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRG 410 (851)
T ss_pred cchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhh--hceeehhhhhHhhcCCCCchHHHHHHhhhhccCCC
Confidence 44 5577788889999999999999999999999999877 999999999999999999 5678889999999877
No 87
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.59 E-value=1.3e-13 Score=160.57 Aligned_cols=116 Identities=12% Similarity=0.139 Sum_probs=100.6
Q ss_pred CCCcEEEEecchhcHHHHHHHHHh---CCCceEeec--------CCCCHHHHHHHHHHHhcCCccEEEEcccccccCccc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKS---QNASFCLLG--------DYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYK 685 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~---~~~~f~~Ih--------ey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~d 685 (754)
...++||||.+...+..|.++|.. -++....+- -.|+|++-...+.+|+.|+++|||||-++- -|+|
T Consensus 412 ~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~E--EGLD 489 (746)
T KOG0354|consen 412 PDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAE--EGLD 489 (746)
T ss_pred CCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchh--ccCC
Confidence 467999999999999999999983 233333333 358999999999999999999999999999 9999
Q ss_pred cCCCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechhcHHHHHHHh
Q 004428 686 IRGIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRFDMLRLERIV 735 (754)
Q Consensus 686 IkgV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~D~~~LErIV 735 (754)
|..+..||=||.=.+|--.+.|.|| ||+.+|.|..|++.-.....|++-
T Consensus 490 I~ec~lVIcYd~~snpIrmIQrrGR-gRa~ns~~vll~t~~~~~~~E~~~ 538 (746)
T KOG0354|consen 490 IGECNLVICYDYSSNPIRMVQRRGR-GRARNSKCVLLTTGSEVIEFERNN 538 (746)
T ss_pred cccccEEEEecCCccHHHHHHHhcc-ccccCCeEEEEEcchhHHHHHHHH
Confidence 9999999999999999999999999 999999999999966666666554
No 88
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.59 E-value=1.5e-14 Score=169.81 Aligned_cols=121 Identities=7% Similarity=-0.026 Sum_probs=108.1
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEcc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYS 696 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~ 696 (754)
...++||||++...+.+|..+|...++++..+|+.+++.+|.+++..|+.|++.|||+|+.++ ||+++++|++||+|+
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~--rGfdlp~v~lVii~d 522 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR--EGLDIPEVSLVAILD 522 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHh--CCccccCCcEEEEeC
Confidence 356899999999999999999999999999999999999999999999999999999999999 999999999999998
Q ss_pred C-----CCCCCchhhhccccCCCCCceEEEEechhcHHHHHHHhCchH
Q 004428 697 L-----PERKEFYPEIVNMLEGSHNMTCTVLFSRFDMLRLERIVGSAH 739 (754)
Q Consensus 697 l-----P~~pefY~erigrt~ra~~g~~~~L~sk~D~~~LErIVGt~r 739 (754)
. |.++..|+||+||+||+..|.|+.+++..+...+..+-.+.+
T Consensus 523 ~eifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~~~~~~~~~~~~~~~ 570 (652)
T PRK05298 523 ADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIDETER 570 (652)
T ss_pred CcccccCCCHHHHHHHhccccCCCCCEEEEEecCCCHHHHHHHHHHHH
Confidence 5 789999999999999988899999988554444444444433
No 89
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.58 E-value=1.2e-13 Score=169.91 Aligned_cols=94 Identities=10% Similarity=0.127 Sum_probs=81.4
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhC------CC---ceEeecCCCCHHHHHHHHHHHhcCCc-cEEEEcccccccCcccc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQ------NA---SFCLLGDYTEPSDISRARVWFFEGKR-KMILYTERSHFYHRYKI 686 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~------~~---~f~~Ihey~sq~~r~rar~~F~~G~~-~ILL~TErahffRr~dI 686 (754)
..++|||||.|...+.++...|++. ++ .+..|++.++. +.+.+..|++|.. +|||++|.+. .|+|+
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~--~~~li~~Fk~~~~p~IlVsvdmL~--TG~Dv 772 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDK--PDQLIRRFKNERLPNIVVTVDLLT--TGIDV 772 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccc--hHHHHHHHhCCCCCeEEEEecccc--cCCCc
Confidence 4579999999999999888887653 22 34568888764 5679999999998 5999999999 99999
Q ss_pred CCCCeEEEccCCCCCCchhhhccccCCC
Q 004428 687 RGIQNLIIYSLPERKEFYPEIVNMLEGS 714 (754)
Q Consensus 687 kgV~~VIfY~lP~~pefY~erigrt~ra 714 (754)
+.|.+|||+.+|.++..|.++|||+.|-
T Consensus 773 P~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 773 PSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred ccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 9999999999999999999999998874
No 90
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.57 E-value=5.7e-14 Score=164.77 Aligned_cols=122 Identities=7% Similarity=-0.016 Sum_probs=113.5
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEcc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYS 696 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~ 696 (754)
...++||||++...+.+|.++|.+.|+++..+|+.+++.+|.+++..|+.|++.|||+|+.++ ||+|+++|++||+++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~--rGfDiP~v~lVvi~D 518 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLR--EGLDLPEVSLVAILD 518 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhc--CCeeeCCCcEEEEeC
Confidence 356899999999999999999999999999999999999999999999999999999999999 999999999999998
Q ss_pred -----CCCCCCchhhhccccCCCCCceEEEEechhcHHHHHHHhCchHH
Q 004428 697 -----LPERKEFYPEIVNMLEGSHNMTCTVLFSRFDMLRLERIVGSAHA 740 (754)
Q Consensus 697 -----lP~~pefY~erigrt~ra~~g~~~~L~sk~D~~~LErIVGt~ra 740 (754)
.|.+...|+||+||+||+..|.|+.++...+...++.|-.+.+.
T Consensus 519 adifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~~~~~~ 567 (655)
T TIGR00631 519 ADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIEETERR 567 (655)
T ss_pred cccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHHHHHhH
Confidence 89999999999999999989999999888887777777776443
No 91
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.50 E-value=4.5e-12 Score=153.13 Aligned_cols=83 Identities=18% Similarity=0.253 Sum_probs=65.4
Q ss_pred HhhhcCCCcEEEEecchhcHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC
Q 004428 612 KIKDSIQGGIMLFLSSYFEFVRLRNFLKS----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR 687 (754)
Q Consensus 612 ~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk 687 (754)
.+.....+++|||++||..-..+...|+. .++.+ +..... ..|.+.+..|+.|+..|||+|+.+. +|+||+
T Consensus 668 ~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~--EGVD~~ 742 (850)
T TIGR01407 668 EITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFW--EGVDFP 742 (850)
T ss_pred HHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceee--cccccC
Confidence 33344568899999999999999999976 24443 333333 5788899999999999999998866 999999
Q ss_pred CCC--eEEEccCCC
Q 004428 688 GIQ--NLIIYSLPE 699 (754)
Q Consensus 688 gV~--~VIfY~lP~ 699 (754)
|.. .||...||-
T Consensus 743 g~~l~~viI~~LPf 756 (850)
T TIGR01407 743 GNGLVCLVIPRLPF 756 (850)
T ss_pred CCceEEEEEeCCCC
Confidence 976 677888884
No 92
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.47 E-value=2.9e-12 Score=154.34 Aligned_cols=346 Identities=17% Similarity=0.158 Sum_probs=222.8
Q ss_pred HHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhh
Q 004428 240 KLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTK 319 (754)
Q Consensus 240 ~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~k 319 (754)
.+...+...+ |...+ -|-|.++|-.+++|+|++..-.|| .||-..|-||++ +
T Consensus 251 ~~~~~l~~~F---g~~~F-R~~Q~eaI~~~l~Gkd~fvlmpTG---------~GKSLCYQlPA~---l------------ 302 (941)
T KOG0351|consen 251 ELELLLKEVF---GHKGF-RPNQLEAINATLSGKDCFVLMPTG---------GGKSLCYQLPAL---L------------ 302 (941)
T ss_pred HHHHHHHHHh---ccccC-ChhHHHHHHHHHcCCceEEEeecC---------CceeeEeecccc---c------------
Confidence 4555666665 43333 368999999999999999999998 678889977763 1
Q ss_pred hhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccch
Q 004428 320 VAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDD 399 (754)
Q Consensus 320 l~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~ 399 (754)
..+-.||+.|...|-.--+..|.+..-.. -| ..++....+
T Consensus 303 -----------------------~~gitvVISPL~SLm~DQv~~L~~~~I~a---------~~--L~s~q~~~~------ 342 (941)
T KOG0351|consen 303 -----------------------LGGVTVVISPLISLMQDQVTHLSKKGIPA---------CF--LSSIQTAAE------ 342 (941)
T ss_pred -----------------------cCCceEEeccHHHHHHHHHHhhhhcCcce---------ee--ccccccHHH------
Confidence 11246999999999877776664432111 11 111111000
Q ss_pred hhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCccc
Q 004428 400 ASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDY 479 (754)
Q Consensus 400 ~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~df 479 (754)
+. .-|+.+=.|| ...+|+--||=.+.-... ..+-..-
T Consensus 343 -~~---------------~i~q~l~~~~----------------------~~ikilYvtPE~v~~~~~-----l~~~~~~ 379 (941)
T KOG0351|consen 343 -RL---------------AILQKLANGN----------------------PIIKILYVTPEKVVASEG-----LLESLAD 379 (941)
T ss_pred -HH---------------HHHHHHhCCC----------------------CeEEEEEeCHHHhhcccc-----hhhHHHh
Confidence 00 0011111111 134566666655432211 0011112
Q ss_pred CCc---eeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCcc-ccEEEEcCCCCHHHHHHHH
Q 004428 480 LSS---IEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFY-RQTVLLSYHPNPEINAFFN 555 (754)
Q Consensus 480 LSS---IEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~-RQTllFSAt~~peinsL~~ 555 (754)
|.. |-.+|||||+-.. .|.| ||.--..|.---..++- .=.|.++||-|+.++.=+-
T Consensus 380 L~~~~~lal~vIDEAHCVS--qWgH------------------dFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi 439 (941)
T KOG0351|consen 380 LYARGLLALFVIDEAHCVS--QWGH------------------DFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVI 439 (941)
T ss_pred ccCCCeeEEEEecHHHHhh--hhcc------------------cccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHH
Confidence 555 9999999999887 4765 12111111111001111 3478999999999875444
Q ss_pred Hhh--cCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecchhcHH
Q 004428 556 HHC--ANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSSYFEFV 632 (754)
Q Consensus 556 ~~~--~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~Sy~d~v 632 (754)
+.+ .|+. .+.. +.. -.++ ++.|-.... .+.=+ .++-.+.. .....+||||.+..+++
T Consensus 440 ~~L~l~~~~---~~~~----sfn--R~NL---~yeV~~k~~---~~~~~-----~~~~~~~~~~~~~s~IIYC~sr~~ce 499 (941)
T KOG0351|consen 440 RSLGLRNPE---LFKS----SFN--RPNL---KYEVSPKTD---KDALL-----DILEESKLRHPDQSGIIYCLSRKECE 499 (941)
T ss_pred HHhCCCCcc---eecc----cCC--CCCc---eEEEEeccC---ccchH-----HHHHHhhhcCCCCCeEEEeCCcchHH
Confidence 433 2321 1111 001 1112 333332210 11111 12222322 34578999999999999
Q ss_pred HHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccC
Q 004428 633 RLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLE 712 (754)
Q Consensus 633 rlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ 712 (754)
+|..+|.+.++++...|..++.++|.++-..|..++++|.+||=-|. =|+|-++|+-||+|+||.+-|-|..=+||.|
T Consensus 500 ~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFG--MGIdK~DVR~ViH~~lPks~E~YYQE~GRAG 577 (941)
T KOG0351|consen 500 QVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFG--MGIDKPDVRFVIHYSLPKSFEGYYQEAGRAG 577 (941)
T ss_pred HHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeecc--CCCCCCceeEEEECCCchhHHHHHHhccccC
Confidence 99999999999999999999999999999999999999999996644 9999999999999999999999999999999
Q ss_pred CCC-CceEEEEechhcHHHHHHHhCch
Q 004428 713 GSH-NMTCTVLFSRFDMLRLERIVGSA 738 (754)
Q Consensus 713 ra~-~g~~~~L~sk~D~~~LErIVGt~ 738 (754)
|.| -..|+.||+..|..+|.+.+-+.
T Consensus 578 RDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 578 RDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred cCCCcceeEEecchhHHHHHHHHHHcc
Confidence 998 46788888988988887665444
No 93
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.45 E-value=1.2e-11 Score=139.52 Aligned_cols=94 Identities=11% Similarity=0.070 Sum_probs=90.9
Q ss_pred CCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSL 697 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~l 697 (754)
..++|||+++......+...|...++ +..|.+.+++.+|...++.|+.|..++|+.+.++- -|+||+++..+|.-.+
T Consensus 283 ~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~--EGvDiP~~~~~i~~~~ 359 (442)
T COG1061 283 GDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLD--EGVDIPDADVLIILRP 359 (442)
T ss_pred CCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeecc--ceecCCCCcEEEEeCC
Confidence 57999999999999999999999988 99999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCchhhhccccCCC
Q 004428 698 PERKEFYPEIVNMLEGS 714 (754)
Q Consensus 698 P~~pefY~erigrt~ra 714 (754)
..++-.|..++||.-|.
T Consensus 360 t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 360 TGSRRLFIQRLGRGLRP 376 (442)
T ss_pred CCcHHHHHHHhhhhccC
Confidence 99999999999999884
No 94
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=1e-12 Score=155.36 Aligned_cols=138 Identities=15% Similarity=0.126 Sum_probs=116.2
Q ss_pred hHHHHHHHHHHHhHHhhh--cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc
Q 004428 598 DDARLEYFTKKVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT 675 (754)
Q Consensus 598 ~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T 675 (754)
.+.+++. |...+.. ....++||||+|.....+|.+.|++.+++...+|+...++++......++.|. |+|||
T Consensus 422 ~~~K~~a----l~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIAT 495 (796)
T PRK12906 422 LDSKFNA----VVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIAT 495 (796)
T ss_pred HHHHHHH----HHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEe
Confidence 3456653 3333432 35689999999999999999999999999999999988777777777777776 99999
Q ss_pred ccccccCccccC---CCC-----eEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 676 ERSHFYHRYKIR---GIQ-----NLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 676 ErahffRr~dIk---gV~-----~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
+.|. ||.||+ +|. |||+|++|.+...|.|++||+||.| .|++..++|..|-+. ++.|..+..+|+.
T Consensus 496 nmAG--RGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l~--~~f~~~~~~~~~~ 570 (796)
T PRK12906 496 NMAG--RGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM--RRFGSDRVKAFLD 570 (796)
T ss_pred cccc--CCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchHH--HhhCcHHHHHHHH
Confidence 9999 999996 899 9999999999999999999999998 699999999886432 5578888887774
No 95
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.45 E-value=2.4e-11 Score=143.83 Aligned_cols=343 Identities=17% Similarity=0.174 Sum_probs=216.2
Q ss_pred CHHHHHHhhhhh-CCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 259 SSKQRSFFSLCN-SYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 259 TpiQ~~~ip~i~-~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
..||..+||++. +-..+|.||+|| +|||.++.|-||+-+-+. +++- +--
T Consensus 112 N~iQS~vFp~aY~SneNMLIcAPTG---------sGKT~la~L~ILr~ik~~------~~~~---------------~i~ 161 (1230)
T KOG0952|consen 112 NRIQSEVFPVAYKSNENMLICAPTG---------SGKTVLAELCILRTIKEH------EEQG---------------DIA 161 (1230)
T ss_pred HHHHHHhhhhhhcCCCCEEEECCCC---------CCchHHHHHHHHHHHHhh------cccc---------------ccc
Confidence 469999999985 456999999999 899999999999887541 1100 000
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHH-hCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIR-LTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSK 416 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~-L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~K 416 (754)
+ ..-|++.++|+|.||..+++.+-+ |.+-. +.| .++.|+
T Consensus 162 k----~~fKiVYIaPmKALa~Em~~~~~kkl~~~g--i~v-------~ELTGD--------------------------- 201 (1230)
T KOG0952|consen 162 K----DDFKIVYIAPMKALAAEMVDKFSKKLAPLG--ISV-------RELTGD--------------------------- 201 (1230)
T ss_pred c----CCceEEEEechHHHHHHHHHHHhhhccccc--ceE-------EEecCc---------------------------
Confidence 1 134899999999999999998875 44322 112 233332
Q ss_pred CCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhh
Q 004428 417 PSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILM 496 (754)
Q Consensus 417 P~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm 496 (754)
+.+++.-+. .+||||.||=- .|++.+. -..+..|.+-|.+|||||.|.|-.
T Consensus 202 -------------------~ql~~tei~------~tqiiVTTPEK-wDvvTRk---~~~d~~l~~~V~LviIDEVHlLhd 252 (1230)
T KOG0952|consen 202 -------------------TQLTKTEIA------DTQIIVTTPEK-WDVVTRK---SVGDSALFSLVRLVIIDEVHLLHD 252 (1230)
T ss_pred -------------------chhhHHHHH------hcCEEEecccc-eeeeeee---eccchhhhhheeeEEeeeehhhcC
Confidence 123332232 48999999987 4555421 112467889999999999998876
Q ss_pred cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhc-C-CCceEEEeecccCc
Q 004428 497 QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCA-N-YQGKVKLACEYKGV 574 (754)
Q Consensus 497 QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~-N-~~G~Vkv~~~~~g~ 574 (754)
.=-.-|+.|+..++.+-.. +-..=..+.+|||+| .+..++. +++ | +.|-..+...+
T Consensus 253 ~RGpvlEtiVaRtlr~ves-----------------sqs~IRivgLSATlP-N~eDvA~-fL~vn~~~glfsFd~~y--- 310 (1230)
T KOG0952|consen 253 DRGPVLETIVARTLRLVES-----------------SQSMIRIVGLSATLP-NYEDVAR-FLRVNPYAGLFSFDQRY--- 310 (1230)
T ss_pred cccchHHHHHHHHHHHHHh-----------------hhhheEEEEeeccCC-CHHHHHH-HhcCCCccceeeecccc---
Confidence 5456678887766533211 000122588999996 4555553 443 4 34443332221
Q ss_pred ccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC----CCce-----
Q 004428 575 LPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ----NASF----- 645 (754)
Q Consensus 575 i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~----~~~f----- 645 (754)
-..+++|.|+-..+.......+.--+-...+++..+. ...++||||++..+.++.++.|.+. |.+-
T Consensus 311 ---RPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~ 385 (1230)
T KOG0952|consen 311 ---RPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPS 385 (1230)
T ss_pred ---cccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCC
Confidence 1345788887766541111111111111123433333 3568999999999999999999653 2222
Q ss_pred --------------EeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCC---------
Q 004428 646 --------------CLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKE--------- 702 (754)
Q Consensus 646 --------------~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pe--------- 702 (754)
+.=|..+.-++|.-.=..|..|.++||+||--++ -|-.++ ..+||--+-|.+--
T Consensus 386 ~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLA--wGVNLP-A~aViIKGT~~ydsskg~f~dlg 462 (1230)
T KOG0952|consen 386 PRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLA--WGVNLP-AYAVIIKGTQVYDSSKGSFVDLG 462 (1230)
T ss_pred hhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceee--eccCCc-ceEEEecCCcccccccCceeeeh
Confidence 2234556778888888899999999999999988 777774 45666665553211
Q ss_pred --chhhhccccCCCC--CceEEEEechhcHHH
Q 004428 703 --FYPEIVNMLEGSH--NMTCTVLFSRFDMLR 730 (754)
Q Consensus 703 --fY~erigrt~ra~--~g~~~~L~sk~D~~~ 730 (754)
.-..+.||.||.. +..+.++.|..|.+.
T Consensus 463 ilDVlQifGRAGRPqFd~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 463 ILDVLQIFGRAGRPQFDSSGEGIIITTRDKLD 494 (1230)
T ss_pred HHHHHHHHhccCCCCCCCCceEEEEecccHHH
Confidence 1234568888865 334555677777643
No 96
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.38 E-value=7.1e-12 Score=149.70 Aligned_cols=123 Identities=15% Similarity=0.094 Sum_probs=112.0
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC---CCCeE-
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR---GIQNL- 692 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk---gV~~V- 692 (754)
...++||||+|......|.++|++.+++...||. .|.+|..++-.|..|...|+|||+.|+ ||.||+ +|.+|
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAG--RGtDIkl~~~V~~vG 672 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAG--RGTDIKLGEGVRELG 672 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcC--CCCCcCCccchhhhC
Confidence 4679999999999999999999999999999996 899999999999999999999999999 999999 67655
Q ss_pred ----EEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 693 ----IIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 693 ----IfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
|++..|.+...|.|++||+||.| .|++..++|..|.+. |..|..+..+|+.
T Consensus 673 GL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lm--r~f~~~~i~~~~~ 728 (1025)
T PRK12900 673 GLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELM--RLFGSDRVISVMD 728 (1025)
T ss_pred CceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHH--HhhCcHHHHHHHH
Confidence 99999999999999999999998 699999999887543 5578888888874
No 97
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.38 E-value=1.5e-11 Score=134.69 Aligned_cols=351 Identities=15% Similarity=0.175 Sum_probs=226.5
Q ss_pred HHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhC-CccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchh
Q 004428 240 KLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNS-YRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDT 318 (754)
Q Consensus 240 ~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~-y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~ 318 (754)
++.++|++.+ |+..+-||+|.+++-.+-. -+||++|-+|| .||...|-||+|-|=
T Consensus 6 ~VreaLKK~F---Gh~kFKs~LQE~A~~c~VK~k~DVyVsMPTG---------aGKSLCyQLPaL~~~------------ 61 (641)
T KOG0352|consen 6 KVREALKKLF---GHKKFKSRLQEQAINCIVKRKCDVYVSMPTG---------AGKSLCYQLPALVHG------------ 61 (641)
T ss_pred HHHHHHHHHh---CchhhcChHHHHHHHHHHhccCcEEEeccCC---------CchhhhhhchHHHhC------------
Confidence 4667787776 7767779999999988866 45999999998 789999999997542
Q ss_pred hhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhC-Cccc---ccccccccccccccCCCccccC
Q 004428 319 KVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLT-PDAH---KVNVEHIDRFCDEFGTKKEEED 394 (754)
Q Consensus 319 kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~-~~~~---~~~v~nk~Rf~~efg~~~~~~~ 394 (754)
| -.+|+.|.-.|...-+++|.+|- |-+. ++...-++|.+..-
T Consensus 62 ----------------------g----ITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL-------- 107 (641)
T KOG0352|consen 62 ----------------------G----ITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDL-------- 107 (641)
T ss_pred ----------------------C----eEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHH--------
Confidence 2 24888999999888888988872 2111 11111122222100
Q ss_pred cccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchh-----HHHHHhhh
Q 004428 395 KDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPIN-----LHQKMTKA 469 (754)
Q Consensus 395 ~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlg-----Lr~lI~~~ 469 (754)
+..|| +-.|+--||-+ ..+++..-
T Consensus 108 ------------------~~ekp---------------------------------~~K~LYITPE~AAt~~FQ~lLn~L 136 (641)
T KOG0352|consen 108 ------------------AKEKP---------------------------------TIKMLYITPEGAATDGFQKLLNGL 136 (641)
T ss_pred ------------------HhcCC---------------------------------ceeEEEEchhhhhhhhHHHHHHHH
Confidence 11122 12233344433 23333210
Q ss_pred hcccccCcccCCceeEEEEecchhhhhcCchHH--HHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIILMQNWSWL--IEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv--~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
-+++ -+.++|+|||+-... |.|= .+-+. +.-+|.-|= . --.+.++||-+
T Consensus 137 ---~~r~-----~L~Y~vVDEAHCVSQ--WGHDFRPDYL~-------------LG~LRS~~~--~----vpwvALTATA~ 187 (641)
T KOG0352|consen 137 ---ANRD-----VLRYIVVDEAHCVSQ--WGHDFRPDYLT-------------LGSLRSVCP--G----VPWVALTATAN 187 (641)
T ss_pred ---hhhc-----eeeeEEechhhhHhh--hccccCcchhh-------------hhhHHhhCC--C----CceEEeecccC
Confidence 0122 356899999998763 8761 11110 011121111 1 12588999999
Q ss_pred HHHHHH-HHH-hhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHH---hhh--c-CCC
Q 004428 548 PEINAF-FNH-HCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPK---IKD--S-IQG 619 (754)
Q Consensus 548 peinsL-~~~-~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~---l~~--~-~~~ 619 (754)
+++..= +.. +++|+- -| +..+ .+. ...|+-+.-.+..+++-.-++-|..+-|-. ... . -.+
T Consensus 188 ~~VqEDi~~qL~L~~PV-Ai-FkTP---~FR------~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~G 256 (641)
T KOG0352|consen 188 AKVQEDIAFQLKLRNPV-AI-FKTP---TFR------DNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTG 256 (641)
T ss_pred hhHHHHHHHHHhhcCcH-Hh-ccCc---chh------hhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCc
Confidence 998753 322 345542 11 1111 000 011222111111111112222233333321 111 1 124
Q ss_pred cEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC
Q 004428 620 GIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE 699 (754)
Q Consensus 620 ~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~ 699 (754)
=-||||.+...+.+++--|...||.+.+.|..+..++|+..-...++|+++|++||--+. -|.|=++|+-||++++|.
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFG--MGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFG--MGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccc--cccCCcceeEEEecCchh
Confidence 479999999999999999999999999999999999999999999999999999999876 999999999999999999
Q ss_pred CCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHH
Q 004428 700 RKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAK 741 (754)
Q Consensus 700 ~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~ 741 (754)
+.--|-.-.||.||.| ...|+-.|++.|...|.=+|-.+.|.
T Consensus 335 n~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~ak 377 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGELAK 377 (641)
T ss_pred hhHHHHHhccccccCCCccceeeeecccchHHHHHHHhhHHHH
Confidence 9999999999999998 57899999999988886666555443
No 98
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.36 E-value=3.2e-11 Score=135.88 Aligned_cols=336 Identities=13% Similarity=0.121 Sum_probs=226.4
Q ss_pred CcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhh-hhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 231 LYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSL-CNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 231 ~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~-i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
..+++.+++++..-++. .|+.. -+|+|..++.. ++.|.|+|+.+.|+ +|||..==|-=|..++.+
T Consensus 195 ~vdeLdipe~fk~~lk~----~G~~e-LlPVQ~laVe~GLLeG~nllVVSaTa---------sGKTLIgElAGi~~~l~~ 260 (830)
T COG1202 195 PVDELDIPEKFKRMLKR----EGIEE-LLPVQVLAVEAGLLEGENLLVVSATA---------SGKTLIGELAGIPRLLSG 260 (830)
T ss_pred cccccCCcHHHHHHHHh----cCcce-ecchhhhhhhhccccCCceEEEeccC---------CCcchHHHhhCcHHHHhC
Confidence 45678888887776665 48877 48999888765 58999999999997 888877666666666543
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHh-CCcccccccccccccccccCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRL-TPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L-~~~~~~~~v~nk~Rf~~efg~ 388 (754)
.-|.|.|||.-.||-|=...+..- ++-.-+ + +. ..|.
T Consensus 261 ----------------------------------g~KmlfLvPLVALANQKy~dF~~rYs~Lglk--v----ai--rVG~ 298 (830)
T COG1202 261 ----------------------------------GKKMLFLVPLVALANQKYEDFKERYSKLGLK--V----AI--RVGM 298 (830)
T ss_pred ----------------------------------CCeEEEEehhHHhhcchHHHHHHHhhcccce--E----EE--Eech
Confidence 247899999999999999888753 322111 1 00 0111
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
.-.. ....| +..-+. -.+||||+|=-|+=-++.
T Consensus 299 srIk--------------------~~~~p-------------------------v~~~t~-~dADIIVGTYEGiD~lLR- 331 (830)
T COG1202 299 SRIK--------------------TREEP-------------------------VVVDTS-PDADIIVGTYEGIDYLLR- 331 (830)
T ss_pred hhhc--------------------ccCCc-------------------------cccCCC-CCCcEEEeechhHHHHHH-
Confidence 0000 00001 000011 369999999999877775
Q ss_pred hhcccccCcccCCceeEEEEecchhhhhcCchH-HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILMQNWSW-LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~h-v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
+ + .+|..|-++||||.|.+-+.--.| +.-+ +.|+|..|=. =|-|-+|||.-
T Consensus 332 t------g-~~lgdiGtVVIDEiHtL~deERG~RLdGL---------------I~RLr~l~~~------AQ~i~LSATVg 383 (830)
T COG1202 332 T------G-KDLGDIGTVVIDEIHTLEDEERGPRLDGL---------------IGRLRYLFPG------AQFIYLSATVG 383 (830)
T ss_pred c------C-CcccccceEEeeeeeeccchhcccchhhH---------------HHHHHHhCCC------CeEEEEEeecC
Confidence 2 1 469999999999999886432222 2222 5566655432 59999999985
Q ss_pred -HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhh---------hcC
Q 004428 548 -PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIK---------DSI 617 (754)
Q Consensus 548 -peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~---------~~~ 617 (754)
|+ .|+..+--+ -|... .. ..+|...... |.+- ..+.+ +...|. ...
T Consensus 384 Np~--elA~~l~a~---lV~y~-~R-------PVplErHlvf--~~~e----~eK~~-----ii~~L~k~E~~~~sskg~ 439 (830)
T COG1202 384 NPE--ELAKKLGAK---LVLYD-ER-------PVPLERHLVF--ARNE----SEKWD-----IIARLVKREFSTESSKGY 439 (830)
T ss_pred ChH--HHHHHhCCe---eEeec-CC-------CCChhHeeee--ecCc----hHHHH-----HHHHHHHHHHhhhhccCc
Confidence 33 344433111 12211 10 1123222222 2111 11221 222221 124
Q ss_pred CCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSL 697 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~l 697 (754)
.++||||..|...+.+|+.+|...|+.+..-|..++..+|.+.-..|..+++.+.|+|--.+ -|-|++ .+.|||=+|
T Consensus 440 rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~--AGVDFP-ASQVIFEsL 516 (830)
T COG1202 440 RGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALA--AGVDFP-ASQVIFESL 516 (830)
T ss_pred CCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhh--cCCCCc-hHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998888 999996 577888777
Q ss_pred CC-----CCCchhhhccccCCCC---CceEEEEec
Q 004428 698 PE-----RKEFYPEIVNMLEGSH---NMTCTVLFS 724 (754)
Q Consensus 698 P~-----~pefY~erigrt~ra~---~g~~~~L~s 724 (754)
-. +|.-|..|+||.||.+ .|.+..|+-
T Consensus 517 aMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllve 551 (830)
T COG1202 517 AMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVE 551 (830)
T ss_pred HcccccCCHHHHHHHhcccCCCCcccCceEEEEec
Confidence 65 3445788999999876 588888875
No 99
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.29 E-value=4.5e-11 Score=109.26 Aligned_cols=118 Identities=15% Similarity=0.181 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccccc
Q 004428 600 ARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSH 679 (754)
Q Consensus 600 ~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErah 679 (754)
.|+..+.. ++..... ..+++||||++......+..+|++.++.+..+|+.++..++......|..|...||++|..+.
T Consensus 12 ~k~~~i~~-~i~~~~~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~ 89 (131)
T cd00079 12 EKLEALLE-LLKEHLK-KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIA 89 (131)
T ss_pred HHHHHHHH-HHHhccc-CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhh
Confidence 56654333 3333221 467999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEE
Q 004428 680 FYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTV 721 (754)
Q Consensus 680 ffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~ 721 (754)
+|++++++++||++++|.++..|..++||++|.+ .|.|.+
T Consensus 90 --~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 90 --RGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred --cCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEe
Confidence 9999999999999999999999999999999988 565543
No 100
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.27 E-value=6.9e-12 Score=107.05 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=75.3
Q ss_pred HHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC
Q 004428 636 NFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH 715 (754)
Q Consensus 636 n~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~ 715 (754)
.+|++.++.++.+|+.+++.+|..++..|.+|+.+|||+|+.+. +|++|+++++||+|++|.++.-|.+++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~--~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILG--EGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGT--TSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccc--ccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 47899999999999999999999999999999999999999988 9999999999999999999999999999999864
No 101
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.20 E-value=7.7e-10 Score=106.01 Aligned_cols=174 Identities=22% Similarity=0.308 Sum_probs=124.4
Q ss_pred CCHHHHHHhhhhhCC-ccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSY-RDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDA 336 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y-~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~ 336 (754)
++|.|.++++.+.+. +.+++++.+| +|||.++++.++.++....
T Consensus 9 ~~~~Q~~~~~~~~~~~~~~~i~~~~G---------sGKT~~~~~~~~~~~~~~~-------------------------- 53 (201)
T smart00487 9 LRPYQKEAIEALLSGLRDVILAAPTG---------SGKTLAALLPALEALKRGK-------------------------- 53 (201)
T ss_pred CCHHHHHHHHHHHcCCCcEEEECCCC---------CchhHHHHHHHHHHhcccC--------------------------
Confidence 799999999999998 9999999998 8999999999999986431
Q ss_pred cccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCC
Q 004428 337 FLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSK 416 (754)
Q Consensus 337 ~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~K 416 (754)
..++||++||+.++.|+.+.+..+.+... ......+++.
T Consensus 54 -------~~~~l~~~p~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--------------------------- 92 (201)
T smart00487 54 -------GKRVLVLVPTRELAEQWAEELKKLGPSLG-------LKVVGLYGGD--------------------------- 92 (201)
T ss_pred -------CCcEEEEeCCHHHHHHHHHHHHHHhccCC-------eEEEEEeCCc---------------------------
Confidence 24699999999999999999998765321 0000111111
Q ss_pred CCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhh
Q 004428 417 PSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILM 496 (754)
Q Consensus 417 P~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm 496 (754)
.. ...++-... ...+|+++||..|...+.. ....+..+.++||||||.+..
T Consensus 93 --------------------~~-~~~~~~~~~-~~~~v~~~t~~~l~~~~~~-------~~~~~~~~~~iIiDE~h~~~~ 143 (201)
T smart00487 93 --------------------SK-REQLRKLES-GKTDILVTTPGRLLDLLEN-------DLLELSNVDLVILDEAHRLLD 143 (201)
T ss_pred --------------------ch-HHHHHHHhc-CCCCEEEeChHHHHHHHHc-------CCcCHhHCCEEEEECHHHHhc
Confidence 00 111111111 2239999999999998862 113467899999999999985
Q ss_pred -cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcC
Q 004428 497 -QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCAN 560 (754)
Q Consensus 497 -QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N 560 (754)
..+..+..++..+ +. -.+-+++|||.+.........++.+
T Consensus 144 ~~~~~~~~~~~~~~---~~---------------------~~~~v~~saT~~~~~~~~~~~~~~~ 184 (201)
T smart00487 144 GGFGDQLEKLLKLL---PK---------------------NVQLLLLSATPPEEIENLLELFLND 184 (201)
T ss_pred CCcHHHHHHHHHhC---Cc---------------------cceEEEEecCCchhHHHHHHHhcCC
Confidence 3344455554433 22 2678999999999888888887764
No 102
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.12 E-value=2.9e-08 Score=121.55 Aligned_cols=131 Identities=14% Similarity=0.164 Sum_probs=104.5
Q ss_pred HHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC---CccEEEEcccccccCc
Q 004428 607 KKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEG---KRKMILYTERSHFYHR 683 (754)
Q Consensus 607 ~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G---~~~ILL~TErahffRr 683 (754)
..+|+.+.. ...++|||+....-..-|..+|...++.++.|+|.++..+|..++..|... ..-+||.|.... -|
T Consensus 477 dkLL~~Lk~-~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGG--lG 553 (1033)
T PLN03142 477 DKLLPKLKE-RDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGG--LG 553 (1033)
T ss_pred HHHHHHHHh-cCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccc--cC
Confidence 346666543 357999999877778888899999999999999999999999999999753 346789999988 99
Q ss_pred cccCCCCeEEEccCCCCCCchhhhccccCCCC---CceEEEEechh--cHHHHHHHhCchHH
Q 004428 684 YKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH---NMTCTVLFSRF--DMLRLERIVGSAHA 740 (754)
Q Consensus 684 ~dIkgV~~VIfY~lP~~pefY~erigrt~ra~---~g~~~~L~sk~--D~~~LErIVGt~ra 740 (754)
+.+..+++||+||+|=||.-+..+++|+-|-| ...++-|++.. |-.-+++.....+.
T Consensus 554 INLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~L 615 (1033)
T PLN03142 554 INLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLAL 615 (1033)
T ss_pred CchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988776 23455567653 44444554444433
No 103
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.11 E-value=8.5e-09 Score=122.81 Aligned_cols=314 Identities=18% Similarity=0.259 Sum_probs=191.7
Q ss_pred HHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhh
Q 004428 243 KHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAK 322 (754)
Q Consensus 243 ~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~ 322 (754)
+.+.+.++++.+.. |...|+...--+..|+-.-..|+|| .|||.-=++-+| .+..
T Consensus 69 e~~~~fF~k~~G~~-~ws~QR~WakR~~rg~SFaiiAPTG---------vGKTTfg~~~sl--~~a~------------- 123 (1187)
T COG1110 69 EEFEEFFKKATGFR-PWSAQRVWAKRLVRGKSFAIIAPTG---------VGKTTFGLLMSL--YLAK------------- 123 (1187)
T ss_pred HHHHHHHHHhhCCC-chHHHHHHHHHHHcCCceEEEcCCC---------CchhHHHHHHHH--HHHh-------------
Confidence 34444455544444 7889999999999999999999999 566533222221 1111
Q ss_pred hccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhh
Q 004428 323 NKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQ 402 (754)
Q Consensus 323 ~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~ 402 (754)
+| -|++||+||+-|+.|+++.|.+++..... -+.+.. |.+.=
T Consensus 124 -----------------kg---kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~----~~~~~~--yh~~l------------ 165 (1187)
T COG1110 124 -----------------KG---KRVYIIVPTTTLVRQVYERLKKFAEDAGS----LDVLVV--YHSAL------------ 165 (1187)
T ss_pred -----------------cC---CeEEEEecCHHHHHHHHHHHHHHHhhcCC----cceeee--ecccc------------
Confidence 33 47999999999999999999999754321 112222 43320
Q ss_pred cccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCC-
Q 004428 403 NIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLS- 481 (754)
Q Consensus 403 ~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLS- 481 (754)
| -+=.+..+.-+.+ ..-||+|+|-.=|..-.+ -|+
T Consensus 166 ------~--------------------------~~ekee~le~i~~-gdfdIlitTs~FL~k~~e-----------~L~~ 201 (1187)
T COG1110 166 ------P--------------------------TKEKEEALERIES-GDFDILITTSQFLSKRFE-----------ELSK 201 (1187)
T ss_pred ------c--------------------------hHHHHHHHHHHhc-CCccEEEEeHHHHHhhHH-----------Hhcc
Confidence 0 0001222332322 357999999887765443 355
Q ss_pred -ceeEEEEecchhhh--hcCchHHHHHHHHhccCCCC---------------CCCCchhhhhhhhcc------cCCCccc
Q 004428 482 -SIEVLIIDHADIIL--MQNWSWLIEVVEQLNRIPSK---------------QHGTDVMRIRQWYLD------GYSRFYR 537 (754)
Q Consensus 482 -SIEiLVlDeAD~mL--mQNw~hv~~Il~~Ln~~Pk~---------------~h~~DfsRvR~w~L~------~~ak~~R 537 (754)
.-.++++|-+|.+| --|-+-+..++. .|.+ ...-.+.+++.-.-. -.-+..=
T Consensus 202 ~kFdfifVDDVDA~LkaskNvDriL~LlG----f~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g 277 (1187)
T COG1110 202 LKFDFIFVDDVDAILKASKNVDRLLRLLG----FSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLG 277 (1187)
T ss_pred cCCCEEEEccHHHHHhccccHHHHHHHcC----CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCc
Confidence 36789999999998 345554444332 1111 011222333221100 0011123
Q ss_pred cEEEEcCCCCHH-HH-HHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh
Q 004428 538 QTVLLSYHPNPE-IN-AFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD 615 (754)
Q Consensus 538 QTllFSAt~~pe-in-sL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~ 615 (754)
|.++-|||-.|- .+ .||+ -+.++. .|.....+.+|..+|.-- .+. + +++..++.
T Consensus 278 ~LvvsSATg~~rg~R~~LfR-eLlgFe---------vG~~~~~LRNIvD~y~~~--~~~----e--------~~~elvk~ 333 (1187)
T COG1110 278 ILVVSSATGKPRGSRLKLFR-ELLGFE---------VGSGGEGLRNIVDIYVES--ESL----E--------KVVELVKK 333 (1187)
T ss_pred eEEEeeccCCCCCchHHHHH-HHhCCc---------cCccchhhhheeeeeccC--ccH----H--------HHHHHHHH
Confidence 567778998875 23 3343 344432 122122344555555533 111 1 23332322
Q ss_pred cCCCcEEEEecc---hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccccccc----CccccCC
Q 004428 616 SIQGGIMLFLSS---YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFY----HRYKIRG 688 (754)
Q Consensus 616 ~~~~~tLIFv~S---y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahff----Rr~dIkg 688 (754)
- ..|.|||||. ..-+..|..||+.+|+++..+|... .+.+..|..|++.+||-. |+|| ||+|++.
T Consensus 334 l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~-----~~~le~F~~GeidvLVGv--AsyYG~lVRGlDLP~ 405 (1187)
T COG1110 334 L-GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEK-----EEALEDFEEGEVDVLVGV--ASYYGVLVRGLDLPH 405 (1187)
T ss_pred h-CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeeccc-----hhhhhhhccCceeEEEEe--cccccceeecCCchh
Confidence 2 4699999999 7888999999999999999999833 678999999999999953 4443 8999987
Q ss_pred -CCeEEEccCCC
Q 004428 689 -IQNLIIYSLPE 699 (754)
Q Consensus 689 -V~~VIfY~lP~ 699 (754)
|+.+|||+.|.
T Consensus 406 rirYaIF~GvPk 417 (1187)
T COG1110 406 RIRYAVFYGVPK 417 (1187)
T ss_pred heeEEEEecCCc
Confidence 89999999994
No 104
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.10 E-value=1.4e-08 Score=122.67 Aligned_cols=94 Identities=17% Similarity=0.248 Sum_probs=67.1
Q ss_pred HHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccc
Q 004428 601 RLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHF 680 (754)
Q Consensus 601 Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahf 680 (754)
..+.....|.. +. ...+++||+.+||..-..+...|....... .+.|-.. .+.+.+..|+.+...||+.|.. |
T Consensus 632 ~~~~~~~~i~~-~~-~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~s--F 704 (820)
T PRK07246 632 YAEEIAKRLEE-LK-QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGS--F 704 (820)
T ss_pred HHHHHHHHHHH-HH-hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecch--h
Confidence 33344444433 44 456899999999999999999997654444 3333221 2456788999999999999955 7
Q ss_pred cCccccCC--CCeEEEccCC-CCC
Q 004428 681 YHRYKIRG--IQNLIIYSLP-ERK 701 (754)
Q Consensus 681 fRr~dIkg--V~~VIfY~lP-~~p 701 (754)
+-|.|++| ...||...|| ..|
T Consensus 705 wEGVD~p~~~~~~viI~kLPF~~P 728 (820)
T PRK07246 705 WEGVDFVQADRMIEVITRLPFDNP 728 (820)
T ss_pred hCCCCCCCCCeEEEEEecCCCCCC
Confidence 79999974 5667888988 445
No 105
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.09 E-value=7.9e-09 Score=112.09 Aligned_cols=132 Identities=17% Similarity=0.183 Sum_probs=108.4
Q ss_pred HHHHHhHHhhhcC-CCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCc
Q 004428 605 FTKKVFPKIKDSI-QGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHR 683 (754)
Q Consensus 605 F~~~iLp~l~~~~-~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr 683 (754)
|+..|...|.... ...-||||=|..|+..|...|+..||.+.+.|.|+.+.+++-|-+..-.|+++|+|+|=-+. -|
T Consensus 303 ~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafg--mg 380 (695)
T KOG0353|consen 303 CIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFG--MG 380 (695)
T ss_pred HHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeec--cc
Confidence 4555665565433 34568999999999999999999999999999999999999999999999999999997755 99
Q ss_pred cccCCCCeEEEccCCCCCCchhh-------------------------------------------hccccCCCC-CceE
Q 004428 684 YKIRGIQNLIIYSLPERKEFYPE-------------------------------------------IVNMLEGSH-NMTC 719 (754)
Q Consensus 684 ~dIkgV~~VIfY~lP~~pefY~e-------------------------------------------rigrt~ra~-~g~~ 719 (754)
+|=++|+.||+-+||...+-|-. -.||.||.+ ...|
T Consensus 381 idkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~c 460 (695)
T KOG0353|consen 381 IDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADC 460 (695)
T ss_pred CCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccE
Confidence 99999999999999999998877 235555554 5788
Q ss_pred EEEechhcHHHHHHHhCch
Q 004428 720 TVLFSRFDMLRLERIVGSA 738 (754)
Q Consensus 720 ~~L~sk~D~~~LErIVGt~ 738 (754)
+.+|---|..++...|-.+
T Consensus 461 ilyy~~~difk~ssmv~~e 479 (695)
T KOG0353|consen 461 ILYYGFADIFKISSMVQME 479 (695)
T ss_pred EEEechHHHHhHHHHHHHH
Confidence 8888777877665444333
No 106
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.02 E-value=1.6e-08 Score=121.93 Aligned_cols=364 Identities=15% Similarity=0.199 Sum_probs=234.7
Q ss_pred CCHHHHHHhhhhhCCc-cEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYR-DILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDA 336 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~-Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~ 336 (754)
..+||..+.+..+.+. .++.||+|| .|||-.-+|-||+.|-.....+..
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTG---------aGKTNVAvLtiLqel~~h~r~dgs--------------------- 359 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTG---------AGKTNVAVLTILQELGNHLREDGS--------------------- 359 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCC---------CCchHHHHHHHHHHHhcccccccc---------------------
Confidence 4689999999998765 799999998 889999999999998654321110
Q ss_pred cccCCCCCceEEEEccchhHHHHHHHHHHH-hCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCC
Q 004428 337 FLDRGFTRPKVLILLPLKSIALNVVKRLIR-LTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKS 415 (754)
Q Consensus 337 ~RDQGftRPkVLIL~PTRelA~qIv~~l~~-L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 415 (754)
.-+ ..-|+..++|++.||..+|..|.+ |++.. +.| .+--| +
T Consensus 360 -~nl--~~fKIVYIAPmKaLvqE~VgsfSkRla~~G--I~V------~ElTg-D-------------------------- 401 (1674)
T KOG0951|consen 360 -VNL--APFKIVYIAPMKALVQEMVGSFSKRLAPLG--ITV------LELTG-D-------------------------- 401 (1674)
T ss_pred -eec--ccceEEEEeeHHHHHHHHHHHHHhhccccC--cEE------EEecc-c--------------------------
Confidence 001 124899999999999999998865 44432 112 11111 1
Q ss_pred CCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhh
Q 004428 416 KPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL 495 (754)
Q Consensus 416 KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL 495 (754)
...+++++ ....|||+||=- .|+|.+ |..+-++.+=+..|||||.|.+-
T Consensus 402 --------------------~~l~~~qi------eeTqVIV~TPEK-~DiITR----k~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 402 --------------------SQLGKEQI------EETQVIVTTPEK-WDIITR----KSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred --------------------ccchhhhh------hcceeEEeccch-hhhhhc----ccCchhHHHHHHHHhhhhhhhcc
Confidence 12233333 478999999987 456664 22355678889999999998765
Q ss_pred hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC--HHHHHHHHHhhcCCCceEEEeecccC
Q 004428 496 MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN--PEINAFFNHHCANYQGKVKLACEYKG 573 (754)
Q Consensus 496 mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~--peinsL~~~~~~N~~G~Vkv~~~~~g 573 (754)
+-=-.-++.|...+...-+ | ....---+-+|||+| .++-++.. .++.|-....+.|.
T Consensus 451 DdRGpvLESIVaRt~r~se------------s-----~~e~~RlVGLSATLPNy~DV~~Fl~---v~~~glf~fd~syR- 509 (1674)
T KOG0951|consen 451 DDRGPVLESIVARTFRRSE------------S-----TEEGSRLVGLSATLPNYEDVASFLR---VDPEGLFYFDSSYR- 509 (1674)
T ss_pred cccchHHHHHHHHHHHHhh------------h-----cccCceeeeecccCCchhhhHHHhc---cCcccccccCcccC-
Confidence 4333455566554432211 1 111223588999998 33433321 23344433333331
Q ss_pred cccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecchhcHHHHHHHHH-------------
Q 004428 574 VLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSSYFEFVRLRNFLK------------- 639 (754)
Q Consensus 574 ~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~Sy~d~vrlrn~Lk------------- 639 (754)
..++.|.|+-+... .++.||+..-.....++.. .+.+++||||.|..+.-+.++.++
T Consensus 510 -----pvPL~qq~Igi~ek----~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fm 580 (1674)
T KOG0951|consen 510 -----PVPLKQQYIGITEK----KPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFM 580 (1674)
T ss_pred -----cCCccceEeccccC----CchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHH
Confidence 24688999887654 3467777655555556554 456899999999988766655444
Q ss_pred -hC-----------------------CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEE-
Q 004428 640 -SQ-----------------------NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLII- 694 (754)
Q Consensus 640 -~~-----------------------~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIf- 694 (754)
+. -.-|+-=|..++..+|.-.-..|..|.++|||.|--.+ +|..+++ ++||.
T Consensus 581 re~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatla--wgvnlpa-htViik 657 (1674)
T KOG0951|consen 581 REDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLA--WGVNLPA-HTVIIK 657 (1674)
T ss_pred hcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhh--hhcCCCc-ceEEec
Confidence 21 13466778999999999999999999999999999999 9999876 44543
Q ss_pred ----ccC------CCCCCchhhhccccCCCC-----CceEEEEechh----------------------cHHHHHHHhCc
Q 004428 695 ----YSL------PERKEFYPEIVNMLEGSH-----NMTCTVLFSRF----------------------DMLRLERIVGS 737 (754)
Q Consensus 695 ----Y~l------P~~pefY~erigrt~ra~-----~g~~~~L~sk~----------------------D~~~LErIVGt 737 (754)
|++ |-.|..-..|+||.||.. .|..++=++.. |.+.-|-+.|.
T Consensus 658 gtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv 737 (1674)
T KOG0951|consen 658 GTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGV 737 (1674)
T ss_pred CccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcch
Confidence 444 345556667778877764 34444322211 11111556677
Q ss_pred hHHHHhhhcCCCcccc
Q 004428 738 AHAKKMVKSEKGVFVF 753 (754)
Q Consensus 738 ~ra~~m~~s~~~~~~F 753 (754)
+++..++.=-+-+|.|
T Consensus 738 ~~~~d~~~wl~yTyly 753 (1674)
T KOG0951|consen 738 RSARDAVDWLGYTYLY 753 (1674)
T ss_pred hhHHHHHhhhcceeeE
Confidence 7777777665555554
No 107
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.02 E-value=9e-10 Score=92.58 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=77.0
Q ss_pred HHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccC
Q 004428 633 RLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLE 712 (754)
Q Consensus 633 rlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ 712 (754)
.|..+|++.++.+..+|+.+++.++..+...|..|...||++|..+. .|++++.+++||++++|.++..|.+++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~--~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAE--RGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhh--CCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 46788888899999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCC
Q 004428 713 GSH 715 (754)
Q Consensus 713 ra~ 715 (754)
|.+
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 864
No 108
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.01 E-value=1.2e-07 Score=113.84 Aligned_cols=229 Identities=22% Similarity=0.219 Sum_probs=155.0
Q ss_pred CCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHH-hccCCCCCCCCchhhhhhhhcc
Q 004428 452 SDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQ-LNRIPSKQHGTDVMRIRQWYLD 530 (754)
Q Consensus 452 sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~-Ln~~Pk~~h~~DfsRvR~w~L~ 530 (754)
.-|-+-|.|=|..-|.+ |. +||.+.++||||||.=.- |-|.+.-+++. +...|.+
T Consensus 140 Trik~mTdGiLlrei~~-------D~-~Ls~ys~vIiDEaHERSl-~tDilLgllk~~~~~rr~D--------------- 195 (845)
T COG1643 140 TRIKVMTDGILLREIQN-------DP-LLSGYSVVIIDEAHERSL-NTDILLGLLKDLLARRRDD--------------- 195 (845)
T ss_pred ceeEEeccHHHHHHHhh-------Cc-ccccCCEEEEcchhhhhH-HHHHHHHHHHHHHhhcCCC---------------
Confidence 45777788888877752 33 699999999999985432 34555555554 3333321
Q ss_pred cCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHh
Q 004428 531 GYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVF 610 (754)
Q Consensus 531 ~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iL 610 (754)
.| .|+.|||+..+- |..|+.|.+ .+.+. |. .-.|.-.|..-... |.++.-=+..++
T Consensus 196 -----LK-iIimSATld~~r---fs~~f~~ap-vi~i~----GR----~fPVei~Y~~~~~~------d~~l~~ai~~~v 251 (845)
T COG1643 196 -----LK-LIIMSATLDAER---FSAYFGNAP-VIEIE----GR----TYPVEIRYLPEAEA------DYILLDAIVAAV 251 (845)
T ss_pred -----ce-EEEEecccCHHH---HHHHcCCCC-EEEec----CC----ccceEEEecCCCCc------chhHHHHHHHHH
Confidence 23 588899999873 345555533 34432 21 22344444332211 211111111233
Q ss_pred HHhhhcCCCcEEEEecchhcHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCcccc
Q 004428 611 PKIKDSIQGGIMLFLSSYFEFVRLRNFLKS----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKI 686 (754)
Q Consensus 611 p~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dI 686 (754)
-.......+.+|||.|--.+..++...|.+ ..+..+.+|+-++..+-.|+..---.|+.+|.|+|-+|- =.+.|
T Consensus 252 ~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAE--TSLTI 329 (845)
T COG1643 252 DIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAE--TSLTI 329 (845)
T ss_pred HHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccc--cceee
Confidence 333445688999999999999999999998 457889999999999999977666777778999999999 99999
Q ss_pred CCCCeEEEccCCCCCCchhhhcc-------------------ccCCCCCceEEEEechhcHHHH
Q 004428 687 RGIQNLIIYSLPERKEFYPEIVN-------------------MLEGSHNMTCTVLFSRFDMLRL 731 (754)
Q Consensus 687 kgV~~VIfY~lP~~pefY~erig-------------------rt~ra~~g~~~~L~sk~D~~~L 731 (754)
+||+.||.=++=.-+- |..+.| |.||-+.|.|+=|||+.+...+
T Consensus 330 ~gIr~VIDsG~ak~~~-y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~ 392 (845)
T COG1643 330 PGIRYVIDSGLAKEKR-YDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAF 392 (845)
T ss_pred CCeEEEecCCcccccc-cccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHhc
Confidence 9999999887765443 444433 3344447999999999887655
No 109
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.87 E-value=4.2e-07 Score=106.81 Aligned_cols=86 Identities=13% Similarity=0.267 Sum_probs=63.6
Q ss_pred HHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceE-eecCCCCHHHHHHHHHHHhc----CCccEEEEcccccccCccc
Q 004428 611 PKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFC-LLGDYTEPSDISRARVWFFE----GKRKMILYTERSHFYHRYK 685 (754)
Q Consensus 611 p~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~-~Ihey~sq~~r~rar~~F~~----G~~~ILL~TErahffRr~d 685 (754)
..+.....+++||-+.||..-..+...|.. .+.+. .+.|. ...+...+..|+. |...||+.|+- |+-|+|
T Consensus 463 ~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~-~l~~~~l~qg~--~~~~~~l~~~f~~~~~~~~~~vL~gt~s--fweGvD 537 (636)
T TIGR03117 463 AAILRKAQGGTLVLTTAFSHISAIGQLVEL-GIPAEIVIQSE--KNRLASAEQQFLALYANGIQPVLIAAGG--AWTGID 537 (636)
T ss_pred HHHHHHcCCCEEEEechHHHHHHHHHHHHh-hcCCCEEEeCC--CccHHHHHHHHHHhhcCCCCcEEEeCCc--cccccc
Confidence 334455678999999999999999999975 33333 33442 2234556777776 58999999988 559999
Q ss_pred c--------CC--CCeEEEccCCCCC
Q 004428 686 I--------RG--IQNLIIYSLPERK 701 (754)
Q Consensus 686 I--------kg--V~~VIfY~lP~~p 701 (754)
| +| +++||..-||--|
T Consensus 538 v~~~~~~p~~G~~Ls~ViI~kLPF~~ 563 (636)
T TIGR03117 538 LTHKPVSPDKDNLLTDLIITCAPFGL 563 (636)
T ss_pred cCCccCCCCCCCcccEEEEEeCCCCc
Confidence 9 45 9999999999333
No 110
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.87 E-value=8.3e-07 Score=108.23 Aligned_cols=275 Identities=16% Similarity=0.211 Sum_probs=178.2
Q ss_pred ceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeec
Q 004428 345 PKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILF 424 (754)
Q Consensus 345 PkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF 424 (754)
.+|-|||||==||.|=.++|.+=...- .++|.-..||.. .
T Consensus 644 KQVAvLVPTTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s----~----------------------------------- 683 (1139)
T COG1197 644 KQVAVLVPTTLLAQQHYETFKERFAGF-PVRIEVLSRFRS----A----------------------------------- 683 (1139)
T ss_pred CeEEEEcccHHhHHHHHHHHHHHhcCC-CeeEEEecccCC----H-----------------------------------
Confidence 689999999999999999998643222 255666677753 1
Q ss_pred cCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHH
Q 004428 425 GGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIE 504 (754)
Q Consensus 425 ~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~ 504 (754)
+=++..++-.+. ...||||+| ..++.. +. -+..+-+|||||=.++=-.--+++..
T Consensus 684 ------------kE~~~il~~la~-G~vDIvIGT----HrLL~k-------dv-~FkdLGLlIIDEEqRFGVk~KEkLK~ 738 (1139)
T COG1197 684 ------------KEQKEILKGLAE-GKVDIVIGT----HRLLSK-------DV-KFKDLGLLIIDEEQRFGVKHKEKLKE 738 (1139)
T ss_pred ------------HHHHHHHHHHhc-CCccEEEec----hHhhCC-------Cc-EEecCCeEEEechhhcCccHHHHHHH
Confidence 001222332332 679999999 556651 23 36788999999999986433455544
Q ss_pred HHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeE
Q 004428 505 VVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQ 584 (754)
Q Consensus 505 Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q 584 (754)
+-..+ =.|-+|||.=|---.+.-.-.+... |--+|+ .+. ..| |
T Consensus 739 Lr~~V----------------------------DvLTLSATPIPRTL~Msm~GiRdlS--vI~TPP-~~R-----~pV-~ 781 (1139)
T COG1197 739 LRANV----------------------------DVLTLSATPIPRTLNMSLSGIRDLS--VIATPP-EDR-----LPV-K 781 (1139)
T ss_pred HhccC----------------------------cEEEeeCCCCcchHHHHHhcchhhh--hccCCC-CCC-----cce-E
Confidence 43221 2678899988875444433333322 111122 111 122 4
Q ss_pred EEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHH
Q 004428 585 IYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ--NASFCLLGDYTEPSDISRARV 662 (754)
Q Consensus 585 ~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~--~~~f~~Ihey~sq~~r~rar~ 662 (754)
+|..=. +.. .....|+..|. ..+++--..|.-.+-.+++..|+.. .++++..||-|+.++..+.+.
T Consensus 782 T~V~~~--d~~--------~ireAI~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~ 849 (1139)
T COG1197 782 TFVSEY--DDL--------LIREAILRELL--RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVML 849 (1139)
T ss_pred EEEecC--ChH--------HHHHHHHHHHh--cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHH
Confidence 454311 110 01123444443 3566777777788899999999986 889999999999999999999
Q ss_pred HHhcCCccEEEEcccccccCccccCCCCeEEEccCCCC--CCchhhhccccCCCC-CceEEEEechhc------HHHHHH
Q 004428 663 WFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPER--KEFYPEIVNMLEGSH-NMTCTVLFSRFD------MLRLER 733 (754)
Q Consensus 663 ~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~--pefY~erigrt~ra~-~g~~~~L~sk~D------~~~LEr 733 (754)
.|.+|+..|||||=..- -|+||++++++|-.+-=.. ++-| .+=||.||+. .+.|.-||-+.. ..+|+.
T Consensus 850 ~F~~g~~dVLv~TTIIE--tGIDIPnANTiIIe~AD~fGLsQLy-QLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~a 926 (1139)
T COG1197 850 DFYNGEYDVLVCTTIIE--TGIDIPNANTIIIERADKFGLAQLY-QLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEA 926 (1139)
T ss_pred HHHcCCCCEEEEeeeee--cCcCCCCCceEEEeccccccHHHHH-HhccccCCccceEEEEEeecCccccCHHHHHHHHH
Confidence 99999999999999999 9999999999996443221 1223 3347888876 466666664322 356766
Q ss_pred HhC
Q 004428 734 IVG 736 (754)
Q Consensus 734 IVG 736 (754)
|-.
T Consensus 927 I~~ 929 (1139)
T COG1197 927 IAS 929 (1139)
T ss_pred HHh
Confidence 644
No 111
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.83 E-value=7.3e-07 Score=96.65 Aligned_cols=292 Identities=16% Similarity=0.217 Sum_probs=177.5
Q ss_pred CCHHHHH----HhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccc
Q 004428 258 HSSKQRS----FFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILI 333 (754)
Q Consensus 258 pTpiQ~~----~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~ 333 (754)
-||-|+. ++..+.+-.|.|.-|-|| .|||.. +-.++..+++
T Consensus 98 Ls~~Q~~as~~l~q~i~~k~~~lv~AV~G---------aGKTEM-if~~i~~al~------------------------- 142 (441)
T COG4098 98 LSPGQKKASNQLVQYIKQKEDTLVWAVTG---------AGKTEM-IFQGIEQALN------------------------- 142 (441)
T ss_pred cChhHHHHHHHHHHHHHhcCcEEEEEecC---------CCchhh-hHHHHHHHHh-------------------------
Confidence 3777754 456667888999999998 666653 2344555543
Q ss_pred ccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCC
Q 004428 334 GDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQ 413 (754)
Q Consensus 334 ~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~ 413 (754)
||+ +|.|-.|--..|+.+...|.+-...-
T Consensus 143 ------~G~---~vciASPRvDVclEl~~Rlk~aF~~~------------------------------------------ 171 (441)
T COG4098 143 ------QGG---RVCIASPRVDVCLELYPRLKQAFSNC------------------------------------------ 171 (441)
T ss_pred ------cCC---eEEEecCcccchHHHHHHHHHhhccC------------------------------------------
Confidence 443 68899998888888887777543211
Q ss_pred CCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchh
Q 004428 414 KSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADI 493 (754)
Q Consensus 414 ~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~ 493 (754)
|.-.++++ .+|. +.+.+||||-=-|... =...+++||||.|.
T Consensus 172 -----~I~~Lyg~-S~~~------------------fr~plvVaTtHQLlrF--------------k~aFD~liIDEVDA 213 (441)
T COG4098 172 -----DIDLLYGD-SDSY------------------FRAPLVVATTHQLLRF--------------KQAFDLLIIDEVDA 213 (441)
T ss_pred -----CeeeEecC-Cchh------------------ccccEEEEehHHHHHH--------------HhhccEEEEecccc
Confidence 11223332 2222 2389999998777654 22467899999999
Q ss_pred hhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceE---EEeec
Q 004428 494 ILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKV---KLACE 570 (754)
Q Consensus 494 mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~V---kv~~~ 570 (754)
+=.-+=..+..-.+.- - |..--||.+|||.+.++..-... |++ ++-..
T Consensus 214 FP~~~d~~L~~Av~~a---r--------------------k~~g~~IylTATp~k~l~r~~~~------g~~~~~klp~R 264 (441)
T COG4098 214 FPFSDDQSLQYAVKKA---R--------------------KKEGATIYLTATPTKKLERKILK------GNLRILKLPAR 264 (441)
T ss_pred ccccCCHHHHHHHHHh---h--------------------cccCceEEEecCChHHHHHHhhh------CCeeEeecchh
Confidence 8422212333333221 1 12245899999999887543322 333 33222
Q ss_pred ccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh--cCCCcEEEEecchhcHHHHHHHHHhC--CCceE
Q 004428 571 YKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQ--NASFC 646 (754)
Q Consensus 571 ~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~--~~~f~ 646 (754)
+.| -...|+..+...+..... ...|+. .+++..|.+ ....++|||+|+-.--..+...|++. ....+
T Consensus 265 fH~----~pLpvPkf~w~~~~~k~l--~r~kl~---~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~ 335 (441)
T COG4098 265 FHG----KPLPVPKFVWIGNWNKKL--QRNKLP---LKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIA 335 (441)
T ss_pred hcC----CCCCCCceEEeccHHHHh--hhccCC---HHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCcccee
Confidence 222 122344433322211100 000111 122223333 24578999999999999999999653 33445
Q ss_pred eecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEcc-CCCC-CCchhhhccccCCCC
Q 004428 647 LLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYS-LPER-KEFYPEIVNMLEGSH 715 (754)
Q Consensus 647 ~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~-lP~~-pefY~erigrt~ra~ 715 (754)
+.|. ....|..-..+|++|++.|||+|-..- ||..++.|+.+|.=. -+.+ -.--+.+.||+||+-
T Consensus 336 ~Vhs--~d~~R~EkV~~fR~G~~~lLiTTTILE--RGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~ 402 (441)
T COG4098 336 SVHS--EDQHRKEKVEAFRDGKITLLITTTILE--RGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSL 402 (441)
T ss_pred eeec--cCccHHHHHHHHHcCceEEEEEeehhh--cccccccceEEEecCCcccccHHHHHHHhhhccCCC
Confidence 6665 455677778999999999999999999 999999999887532 1111 122456779999875
No 112
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.77 E-value=6.8e-06 Score=95.96 Aligned_cols=328 Identities=15% Similarity=0.144 Sum_probs=202.5
Q ss_pred CCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCcccc
Q 004428 236 GLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTK 315 (754)
Q Consensus 236 ~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~k 315 (754)
.....+.+.|.+. ..|. +|.-|+.++.-|.. |+--..+----+.| +-++|||.+-+|-+|+-+-
T Consensus 246 ~~~~~l~~~~~~~---LPF~--LT~aQ~~vi~EI~~--Dl~~~~~M~RLlQG-DVGSGKTvVA~laml~ai~-------- 309 (677)
T COG1200 246 PANGELLAKFLAA---LPFK--LTNAQKRVIKEILA--DLASPVPMNRLLQG-DVGSGKTVVALLAMLAAIE-------- 309 (677)
T ss_pred CccHHHHHHHHHh---CCCC--ccHHHHHHHHHHHh--hhcCchhhHHHhcc-CcCCCHHHHHHHHHHHHHH--------
Confidence 3344455555443 2553 59999999887753 22111000000112 4569999999999888663
Q ss_pred chhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCc
Q 004428 316 NDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDK 395 (754)
Q Consensus 316 nn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~ 395 (754)
.|| +|..++||==||.|=...+.++.+... +.| .-..|..
T Consensus 310 ------------------------~G~---Q~ALMAPTEILA~QH~~~~~~~l~~~~-i~V------~lLtG~~------ 349 (677)
T COG1200 310 ------------------------AGY---QAALMAPTEILAEQHYESLRKWLEPLG-IRV------ALLTGSL------ 349 (677)
T ss_pred ------------------------cCC---eeEEeccHHHHHHHHHHHHHHHhhhcC-CeE------EEeeccc------
Confidence 354 689999999999999999999876532 111 1111211
Q ss_pred ccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhccccc
Q 004428 396 DDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQ 475 (754)
Q Consensus 396 ~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~r 475 (754)
| |-+-..-..+|.+ ...||||+| .-+|.
T Consensus 350 --------------------k------------------gk~r~~~l~~l~~--G~~~ivVGT----HALiQ-------- 377 (677)
T COG1200 350 --------------------K------------------GKARKEILEQLAS--GEIDIVVGT----HALIQ-------- 377 (677)
T ss_pred --------------------c------------------hhHHHHHHHHHhC--CCCCEEEEc----chhhh--------
Confidence 0 0000111223333 459999999 44554
Q ss_pred CcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHH
Q 004428 476 DVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFF 554 (754)
Q Consensus 476 d~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~ 554 (754)
+.--+..+-++|+||=||+= +| ...+..-.. + +=-.|++|||.=|---+|.
T Consensus 378 d~V~F~~LgLVIiDEQHRFGV~Q-----R~~L~~KG~---------------------~--~Ph~LvMTATPIPRTLAlt 429 (677)
T COG1200 378 DKVEFHNLGLVIIDEQHRFGVHQ-----RLALREKGE---------------------Q--NPHVLVMTATPIPRTLALT 429 (677)
T ss_pred cceeecceeEEEEeccccccHHH-----HHHHHHhCC---------------------C--CCcEEEEeCCCchHHHHHH
Confidence 12236788999999999985 54 222222121 0 1236999999998766554
Q ss_pred HHhhcCCCceEEEe--ecc-cCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh--cCCCcEEEEecch-
Q 004428 555 NHHCANYQGKVKLA--CEY-KGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD--SIQGGIMLFLSSY- 628 (754)
Q Consensus 555 ~~~~~N~~G~Vkv~--~~~-~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy- 628 (754)
- -|-+.+. .+. .|. ..|.=.... +.|+. .++..+.. ....++.+.||=-
T Consensus 430 ~------fgDldvS~IdElP~GR-----kpI~T~~i~----------~~~~~----~v~e~i~~ei~~GrQaY~VcPLIe 484 (677)
T COG1200 430 A------FGDLDVSIIDELPPGR-----KPITTVVIP----------HERRP----EVYERIREEIAKGRQAYVVCPLIE 484 (677)
T ss_pred H------hccccchhhccCCCCC-----CceEEEEec----------cccHH----HHHHHHHHHHHcCCEEEEEecccc
Confidence 2 1333322 110 120 123222222 12232 23333332 2456788888833
Q ss_pred -------hcHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC
Q 004428 629 -------FEFVRLRNFLKSQ--NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE 699 (754)
Q Consensus 629 -------~d~vrlrn~Lk~~--~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~ 699 (754)
..++.+.+.|+.. ++..+.+||-|+..+..+++..|++|+++|||+|=|.- =|.|+++.+-.|.++.=.
T Consensus 485 ESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIE--VGVdVPnATvMVIe~AER 562 (677)
T COG1200 485 ESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIE--VGVDVPNATVMVIENAER 562 (677)
T ss_pred ccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEE--ecccCCCCeEEEEechhh
Confidence 3566677777743 67799999999999999999999999999999999999 999999999999998655
Q ss_pred CCCchhhhc-cccCCCC-CceEEEEechh
Q 004428 700 RKEFYPEIV-NMLEGSH-NMTCTVLFSRF 726 (754)
Q Consensus 700 ~pefY~eri-grt~ra~-~g~~~~L~sk~ 726 (754)
.---=.|-. ||.||.+ .+.|+-+|...
T Consensus 563 FGLaQLHQLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 563 FGLAQLHQLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred hhHHHHHHhccccCCCCcceEEEEEeCCC
Confidence 444444444 6788776 57787777543
No 113
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.66 E-value=4.7e-06 Score=102.39 Aligned_cols=89 Identities=22% Similarity=0.372 Sum_probs=68.4
Q ss_pred HhhhcCCCcEEEEecchhcHHHHHHHHHhCCC--ceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCC-
Q 004428 612 KIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNA--SFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRG- 688 (754)
Q Consensus 612 ~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~--~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkg- 688 (754)
.+.....+++|||.+||..-..+..+|+.... .+..+.-..+...|.+.+..|+.++..||+.|.- |+-|+|++|
T Consensus 746 ~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~s--FwEGVD~pg~ 823 (928)
T PRK08074 746 KIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSS--FWEGIDIPGD 823 (928)
T ss_pred HHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCc--ccCccccCCC
Confidence 34444568999999999999999999986432 1333333344456788899999999999999955 779999999
Q ss_pred -CCeEEEccCCC-CCC
Q 004428 689 -IQNLIIYSLPE-RKE 702 (754)
Q Consensus 689 -V~~VIfY~lP~-~pe 702 (754)
.+.||.-.||- .|.
T Consensus 824 ~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 824 ELSCLVIVRLPFAPPD 839 (928)
T ss_pred ceEEEEEecCCCCCCC
Confidence 59999999995 565
No 114
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.66 E-value=1.9e-06 Score=103.39 Aligned_cols=335 Identities=14% Similarity=0.118 Sum_probs=203.0
Q ss_pred CHHHHHHhhhhhC---Cc-cEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccc
Q 004428 259 SSKQRSFFSLCNS---YR-DILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIG 334 (754)
Q Consensus 259 TpiQ~~~ip~i~~---y~-Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~ 334 (754)
.+.|..++-.+.. .. .++..|+|| .|||.|.+..++.++...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~vl~aPTG---------~GKT~asl~~a~~~~~~~------------------------- 242 (733)
T COG1203 197 YELQEKALELILRLEKRSLLVVLEAPTG---------YGKTEASLILALALLDEK------------------------- 242 (733)
T ss_pred hHHHHHHHHHHHhcccccccEEEEeCCC---------CChHHHHHHHHHHHhhcc-------------------------
Confidence 5667666666543 33 778899998 789999999988777431
Q ss_pred cccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCC
Q 004428 335 DAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQK 414 (754)
Q Consensus 335 ~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~ 414 (754)
+ ...+|++.++|||-+..++.+.+....+.... . ... +.+..... ..
T Consensus 243 -----~-~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~---~--~~~---~h~~~~~~-------------------~~ 289 (733)
T COG1203 243 -----I-KLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV---I--GKS---LHSSSKEP-------------------LL 289 (733)
T ss_pred -----c-cccceEEEEccHHHHHHHHHHHHHhhhccccc---c--ccc---ccccccch-------------------hh
Confidence 0 13578999999999999999999987543321 0 000 11110000 00
Q ss_pred CCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCC--ceeEEEEecch
Q 004428 415 SKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLS--SIEVLIIDHAD 492 (754)
Q Consensus 415 ~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLS--SIEiLVlDeAD 492 (754)
..|.+ ++++..+ ...-|.. -...+++.+|..+..... +-..+.+++ ..-++|+||++
T Consensus 290 ~~~~~-------------~~~~~~~--~~ds~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 290 LEPDQ-------------DILLTLT--TNDSYKK-LLLALIVVTPIQILIFSV-----KGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred hcccc-------------ccceeEE--ecccccc-eeccccccCHhHhhhhhc-----cccchHHHHHHHhhchhhccHH
Confidence 11111 1111111 0001111 124567777777665322 112233232 34689999999
Q ss_pred hhhhc-CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecc
Q 004428 493 IILMQ-NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEY 571 (754)
Q Consensus 493 ~mLmQ-Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~ 571 (754)
.+..- -|..+..++..++..-. -.|+.|||+|+.+...+...+.+. +.+......
T Consensus 349 ~~~~~~~~~~l~~~i~~l~~~g~-----------------------~ill~SATlP~~~~~~l~~~~~~~-~~~~~~~~~ 404 (733)
T COG1203 349 LYADETMLAALLALLEALAEAGV-----------------------PVLLMSATLPPFLKEKLKKALGKG-REVVENAKF 404 (733)
T ss_pred hhcccchHHHHHHHHHHHHhCCC-----------------------CEEEEecCCCHHHHHHHHHHHhcc-cceeccccc
Confidence 99855 57888888888764322 268889999999999888877663 222221110
Q ss_pred cCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCC
Q 004428 572 KGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDY 651 (754)
Q Consensus 572 ~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey 651 (754)
.+...... +.+. .+++ ..+.+... ...++...-....++||-|+|-..+.++...|+..+.+.+.+|+-
T Consensus 405 ~~~~~e~~--~~~~-~~~~------~~~~~~~~--~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSR 473 (733)
T COG1203 405 CPKEDEPG--LKRK-ERVD------VEDGPQEE--LIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSR 473 (733)
T ss_pred cccccccc--cccc-cchh------hhhhhhHh--hhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecc
Confidence 00000110 1110 0011 01111100 011111111346899999999999999999999988899999999
Q ss_pred CCHHHHHHHHHH----HhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC---CceEEE
Q 004428 652 TEPSDISRARVW----FFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH---NMTCTV 721 (754)
Q Consensus 652 ~sq~~r~rar~~----F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~---~g~~~~ 721 (754)
.+.++|.+-... |+.+...|+|+|=+.- =|.||. .+.+| .=|.-.+--+.|.||..|-+ +|.+++
T Consensus 474 f~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIE--agvDid-fd~mI--Te~aPidSLIQR~GRv~R~g~~~~~~~~v 545 (733)
T COG1203 474 FTLKDREEKERELKKLFKQNEGFIVVATQVIE--AGVDID-FDVLI--TELAPIDSLIQRAGRVNRHGKKENGKIYV 545 (733)
T ss_pred cchhhHHHHHHHHHHHHhccCCeEEEEeeEEE--EEeccc-cCeee--ecCCCHHHHHHHHHHHhhcccccCCceeE
Confidence 999999987764 3567899999999999 999995 66554 33444556688999998766 344444
No 115
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.65 E-value=2.7e-06 Score=101.04 Aligned_cols=93 Identities=11% Similarity=0.049 Sum_probs=73.4
Q ss_pred CCcEEEEecchhcHHHHHHHHHhC-----CCceEeecCCCCHH---------------------HHHHHHHHHhc-CCcc
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQ-----NASFCLLGDYTEPS---------------------DISRARVWFFE-GKRK 670 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~-----~~~f~~Ihey~sq~---------------------~r~rar~~F~~-G~~~ 670 (754)
..++||||.|...++++.+.|.+. +...+.+++..... ...+.+..|++ +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 489999999999999999998764 24556666544332 12367888977 6889
Q ss_pred EEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCC
Q 004428 671 MILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEG 713 (754)
Q Consensus 671 ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~r 713 (754)
|||.+|.+- -|||.+.+.+++..-+-.. +-+...|||+-|
T Consensus 594 ilIVvdmll--TGFDaP~l~tLyldKplk~-h~LlQai~R~nR 633 (667)
T TIGR00348 594 LLIVVDMLL--TGFDAPILNTLYLDKPLKY-HGLLQAIARTNR 633 (667)
T ss_pred EEEEEcccc--cccCCCccceEEEeccccc-cHHHHHHHHhcc
Confidence 999999988 9999999999998776554 456788888887
No 116
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.45 E-value=5.6e-06 Score=74.62 Aligned_cols=121 Identities=21% Similarity=0.234 Sum_probs=79.4
Q ss_pred cEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccc
Q 004428 274 DILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPL 353 (754)
Q Consensus 274 Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PT 353 (754)
-++....|| +|||..++.-+....... ..+++||++|+
T Consensus 2 ~~~i~~~~G---------~GKT~~~~~~~~~~~~~~---------------------------------~~~~~lv~~p~ 39 (144)
T cd00046 2 DVLLAAPTG---------SGKTLAALLPILELLDSL---------------------------------KGGQVLVLAPT 39 (144)
T ss_pred CEEEECCCC---------CchhHHHHHHHHHHHhcc---------------------------------cCCCEEEEcCc
Confidence 356777777 899999888887766431 24689999999
Q ss_pred hhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCccc
Q 004428 354 KSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFS 433 (754)
Q Consensus 354 RelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~Fr 433 (754)
+.++.|+.+.+...... . ..+ . .+.+..
T Consensus 40 ~~l~~~~~~~~~~~~~~-~-~~~----~---~~~~~~------------------------------------------- 67 (144)
T cd00046 40 RELANQVAERLKELFGE-G-IKV----G---YLIGGT------------------------------------------- 67 (144)
T ss_pred HHHHHHHHHHHHHHhhC-C-cEE----E---EEecCc-------------------------------------------
Confidence 99999999988876542 1 101 0 111000
Q ss_pred ccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchH
Q 004428 434 IGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSW 501 (754)
Q Consensus 434 iGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~h 501 (754)
...... .....+++|+|+|+..+...+.. .........++||||||.+....|..
T Consensus 68 ----~~~~~~--~~~~~~~~i~i~t~~~~~~~~~~-------~~~~~~~~~~iiiDE~h~~~~~~~~~ 122 (144)
T cd00046 68 ----SIKQQE--KLLSGKTDIVVGTPGRLLDELER-------LKLSLKKLDLLILDEAHRLLNQGFGL 122 (144)
T ss_pred ----chhHHH--HHhcCCCCEEEECcHHHHHHHHc-------CCcchhcCCEEEEeCHHHHhhcchHH
Confidence 000000 11135799999999999887652 11345678899999999998554544
No 117
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.43 E-value=1.6e-05 Score=95.10 Aligned_cols=333 Identities=12% Similarity=0.126 Sum_probs=198.3
Q ss_pred HHHHHHh--hhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 260 SKQRSFF--SLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 260 piQ~~~i--p~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
..|.+++ |-++.+..++|.++|+ .|||.+--|=+|..++--
T Consensus 226 ewq~ecls~~~~~e~~nliys~Pts---------~gktlvaeilml~~~l~~---------------------------- 268 (1008)
T KOG0950|consen 226 EWQAECLSLPRLLERKNLIYSLPTS---------AGKTLVAEILMLREVLCR---------------------------- 268 (1008)
T ss_pred HHHHHHhcchhhhcccceEEeCCCc---------cchHHHHHHHHHHHHHHH----------------------------
Confidence 5676665 5678999999999997 789999888888887743
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
|-+||.++|+-..+..=+..+..++-..+ -+.++|+|... +...
T Consensus 269 ------rr~~llilp~vsiv~Ek~~~l~~~~~~~G--------~~ve~y~g~~~---------------------p~~~- 312 (1008)
T KOG0950|consen 269 ------RRNVLLILPYVSIVQEKISALSPFSIDLG--------FPVEEYAGRFP---------------------PEKR- 312 (1008)
T ss_pred ------hhceeEecceeehhHHHHhhhhhhccccC--------CcchhhcccCC---------------------CCCc-
Confidence 23578889988877777777777654432 23456664311 0000
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
+..-++-|||-=.=..+|..-- ..-.+..+-++|+||.+.+-.+
T Consensus 313 -------------------------------~k~~sv~i~tiEkanslin~li-----e~g~~~~~g~vvVdElhmi~d~ 356 (1008)
T KOG0950|consen 313 -------------------------------RKRESVAIATIEKANSLINSLI-----EQGRLDFLGMVVVDELHMIGDK 356 (1008)
T ss_pred -------------------------------ccceeeeeeehHhhHhHHHHHH-----hcCCccccCcEEEeeeeeeecc
Confidence 0123555666433333332100 1123778999999999999877
Q ss_pred Cch-HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC--HHHHHHHHHhh--cCCCceEEEee-cc
Q 004428 498 NWS-WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN--PEINAFFNHHC--ANYQGKVKLAC-EY 571 (754)
Q Consensus 498 Nw~-hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~--peinsL~~~~~--~N~~G~Vkv~~-~~ 571 (754)
.-+ +++.++.. +..|++... =|.|-.|||++ +.+...++.+. .+++ -|.+.- ..
T Consensus 357 ~rg~~lE~~l~k---------------~~y~~~~~~----~~iIGMSATi~N~~lL~~~L~A~~y~t~fR-Pv~L~E~ik 416 (1008)
T KOG0950|consen 357 GRGAILELLLAK---------------ILYENLETS----VQIIGMSATIPNNSLLQDWLDAFVYTTRFR-PVPLKEYIK 416 (1008)
T ss_pred ccchHHHHHHHH---------------HHHhccccc----eeEeeeecccCChHHHHHHhhhhheecccC-cccchhccC
Confidence 654 45555543 455655544 57899999998 44554444321 1111 111110 00
Q ss_pred cCc-cccc-c-cceeEEEEEeccCcc-cchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC------
Q 004428 572 KGV-LPKV-L-LNVRQIYERFNADSI-AKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ------ 641 (754)
Q Consensus 572 ~g~-i~~v-~-~~I~Q~f~r~~~~s~-~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~------ 641 (754)
.|. +-.. . .-++-++ ....... .+.+|--.. ...+.+ ....++||||||+..+..++-.+.+.
T Consensus 417 ~G~~i~~~~r~~~lr~ia-~l~~~~~g~~dpD~~v~-L~tet~-----~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~ 489 (1008)
T KOG0950|consen 417 PGSLIYESSRNKVLREIA-NLYSSNLGDEDPDHLVG-LCTETA-----PEGSSVLVFCPSKKNCENVASLIAKKVPKHIK 489 (1008)
T ss_pred CCcccccchhhHHHHHhh-hhhhhhcccCCCcceee-ehhhhh-----hcCCeEEEEcCcccchHHHHHHHHHHhhHhhh
Confidence 110 0000 0 0000000 0000000 011121000 000111 12356999999999988776443210
Q ss_pred ------------------------------CC--ceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCC
Q 004428 642 ------------------------------NA--SFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGI 689 (754)
Q Consensus 642 ------------------------------~~--~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV 689 (754)
.+ -++..|..++..+|.-+=..|++|-+.|+++|.-.+ -|+..+ +
T Consensus 490 ~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTla--aGVNLP-A 566 (1008)
T KOG0950|consen 490 SEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLA--AGVNLP-A 566 (1008)
T ss_pred hhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhh--ccCcCC-c
Confidence 12 234578899999999999999999999999999977 898884 5
Q ss_pred CeEEEccCCCCCCc-----hhhhccccCCCC---CceEEEEechhcHHHH
Q 004428 690 QNLIIYSLPERKEF-----YPEIVNMLEGSH---NMTCTVLFSRFDMLRL 731 (754)
Q Consensus 690 ~~VIfY~lP~~pef-----Y~erigrt~ra~---~g~~~~L~sk~D~~~L 731 (754)
+.||.=.+.--.+| |..|+||+||+| -|.++.++.+.|..+.
T Consensus 567 rRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~ 616 (1008)
T KOG0950|consen 567 RRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRV 616 (1008)
T ss_pred ceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHH
Confidence 66665555444444 999999999987 5889999988886544
No 118
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.25 E-value=0.00018 Score=83.88 Aligned_cols=229 Identities=17% Similarity=0.168 Sum_probs=151.8
Q ss_pred CCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhccc
Q 004428 452 SDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDG 531 (754)
Q Consensus 452 sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~ 531 (754)
.-|..-|-|=|..-+- .|. .|+...++||||||-=-. +=|-+.-+++.+-+...+
T Consensus 141 TrikymTDG~LLRE~l-------~Dp-~LskYsvIIlDEAHERsl-~TDiLlGlLKki~~~R~~---------------- 195 (674)
T KOG0922|consen 141 TRIKYMTDGMLLREIL-------KDP-LLSKYSVIILDEAHERSL-HTDILLGLLKKILKKRPD---------------- 195 (674)
T ss_pred eeEEEecchHHHHHHh-------cCC-ccccccEEEEechhhhhh-HHHHHHHHHHHHHhcCCC----------------
Confidence 3455666777766554 133 499999999999985321 224445555544222211
Q ss_pred CCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhH
Q 004428 532 YSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFP 611 (754)
Q Consensus 532 ~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp 611 (754)
=-.|+.|||+..+ .|+.|+.|. ..+.| .|. .-+|+..|..-+..+.. .--+..++.
T Consensus 196 -----LklIimSATlda~---kfS~yF~~a-~i~~i----~GR----~fPVei~y~~~p~~dYv-------~a~~~tv~~ 251 (674)
T KOG0922|consen 196 -----LKLIIMSATLDAE---KFSEYFNNA-PILTI----PGR----TFPVEILYLKEPTADYV-------DAALITVIQ 251 (674)
T ss_pred -----ceEEEEeeeecHH---HHHHHhcCC-ceEee----cCC----CCceeEEeccCCchhhH-------HHHHHHHHH
Confidence 1378999999965 466777763 33333 231 23577767664433221 111112222
Q ss_pred HhhhcCCCcEEEEecchhcHHHHHHHHHhC--CC------ceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCc
Q 004428 612 KIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ--NA------SFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHR 683 (754)
Q Consensus 612 ~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~--~~------~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr 683 (754)
.-.....+-+|||.+...+...+...|.+. .. -...||+-++..+-.|+-.---.|..+|.|+|-.|. =-
T Consensus 252 Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAE--TS 329 (674)
T KOG0922|consen 252 IHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAE--TS 329 (674)
T ss_pred HHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceee--ee
Confidence 223356789999999999998888888764 11 146799999999999987777789999999999999 99
Q ss_pred cccCCCCeEEEccCCC------------------CCCchhhhccccCCCCCceEEEEechhcHHHH
Q 004428 684 YKIRGIQNLIIYSLPE------------------RKEFYPEIVNMLEGSHNMTCTVLFSRFDMLRL 731 (754)
Q Consensus 684 ~dIkgV~~VIfY~lP~------------------~pefY~erigrt~ra~~g~~~~L~sk~D~~~L 731 (754)
+.|+||..||.=++=. +-.-=..|.||.||.+.|.|.=|||+.+..+|
T Consensus 330 lTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~ 395 (674)
T KOG0922|consen 330 LTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKM 395 (674)
T ss_pred EEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhc
Confidence 9999999999655422 11122345667777778999999998877655
No 119
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.20 E-value=2.1e-05 Score=75.92 Aligned_cols=154 Identities=18% Similarity=0.138 Sum_probs=90.1
Q ss_pred CCHHHHHHhhhhhC-------CccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccc
Q 004428 258 HSSKQRSFFSLCNS-------YRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEG 330 (754)
Q Consensus 258 pTpiQ~~~ip~i~~-------y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~ 330 (754)
+.|-|.+++--+.. ++.+++.+.|| +|||.+.+.-++...
T Consensus 4 lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tG---------sGKT~~~~~~~~~l~------------------------ 50 (184)
T PF04851_consen 4 LRPYQQEAIARIINSLENKKEERRVLLNAPTG---------SGKTIIALALILELA------------------------ 50 (184)
T ss_dssp E-HHHHHHHHHHHHHHHTTSGCSEEEEEESTT---------SSHHHHHHHHHHHHH------------------------
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCC---------CCcChhhhhhhhccc------------------------
Confidence 35788888877763 68999999998 899988885332222
Q ss_pred cccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccC
Q 004428 331 ILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKS 410 (754)
Q Consensus 331 ~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~ 410 (754)
+ ++||++|++.|+.|..+.+..+...... -+........
T Consensus 51 -------------~-~~l~~~p~~~l~~Q~~~~~~~~~~~~~~-------~~~~~~~~~~-------------------- 89 (184)
T PF04851_consen 51 -------------R-KVLIVAPNISLLEQWYDEFDDFGSEKYN-------FFEKSIKPAY-------------------- 89 (184)
T ss_dssp -------------C-EEEEEESSHHHHHHHHHHHHHHSTTSEE-------EEE--GGGCC--------------------
T ss_pred -------------c-ceeEecCHHHHHHHHHHHHHHhhhhhhh-------hccccccccc--------------------
Confidence 1 7899999999999999999777543211 0100000000
Q ss_pred CCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhccc----ccCcccCCceeEE
Q 004428 411 NSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENK----EQDVDYLSSIEVL 486 (754)
Q Consensus 411 ~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k----~rd~dfLSSIEiL 486 (754)
+.. .+.- .. -....... ......+|++.|.-.|...+....... ......+....++
T Consensus 90 --------~~~-~~~~-~~------~~~~~~~~---~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 90 --------DSK-EFIS-IQ------DDISDKSE---SDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp --------E-S-EEET-TT------TEEEHHHH---HCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred --------ccc-cccc-cc------cccccccc---cccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 000 0000 00 01111111 123578999999999988765211000 0111234567799
Q ss_pred EEecchhhhhcC-chHHHH
Q 004428 487 IIDHADIILMQN-WSWLIE 504 (754)
Q Consensus 487 VlDeAD~mLmQN-w~hv~~ 504 (754)
|+||||.+--.. |..+..
T Consensus 151 I~DEaH~~~~~~~~~~i~~ 169 (184)
T PF04851_consen 151 IIDEAHHYPSDSSYREIIE 169 (184)
T ss_dssp EEETGGCTHHHHHHHHHHH
T ss_pred EEehhhhcCCHHHHHHHHc
Confidence 999999998444 777665
No 120
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.13 E-value=0.00052 Score=82.53 Aligned_cols=230 Identities=14% Similarity=0.205 Sum_probs=142.3
Q ss_pred CCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcC----chHHHHHHHHhccCCCCCCCCchhhhhh
Q 004428 451 TSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQN----WSWLIEVVEQLNRIPSKQHGTDVMRIRQ 526 (754)
Q Consensus 451 ~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQN----w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~ 526 (754)
.+.++|-|-==||-.+- |+.|-++++|.+|+||.|-+-++- |+.|. -.+|+.
T Consensus 379 eAsCLIMTTEILRsMLY-------rgadliRDvE~VIFDEVHYiND~eRGvVWEEVi------IMlP~H----------- 434 (1248)
T KOG0947|consen 379 EASCLIMTTEILRSMLY-------RGADLIRDVEFVIFDEVHYINDVERGVVWEEVI------IMLPRH----------- 434 (1248)
T ss_pred CcceEeehHHHHHHHHh-------cccchhhccceEEEeeeeecccccccccceeee------eecccc-----------
Confidence 47789999888888886 578889999999999999986543 76543 446764
Q ss_pred hhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCccccc--ccceeEEEEE----------------
Q 004428 527 WYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKV--LLNVRQIYER---------------- 588 (754)
Q Consensus 527 w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v--~~~I~Q~f~r---------------- 588 (754)
=|-||+|||.|-... +.+|.|+++-+..|. |+.. ..++.+.++-
T Consensus 435 ----------V~~IlLSATVPN~~E------FA~WIGRtK~K~IyV--iST~kRPVPLEh~l~t~~~l~kiidq~g~fl~ 496 (1248)
T KOG0947|consen 435 ----------VNFILLSATVPNTLE------FADWIGRTKQKTIYV--ISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLL 496 (1248)
T ss_pred ----------ceEEEEeccCCChHH------HHHHhhhccCceEEE--EecCCCccceEEEEEeccceehhhcccchhhh
Confidence 689999999984321 223445543332221 0000 1112221110
Q ss_pred ---------e---------ccCc---------------cc-------chhHHHHH--HHHHHHhHHhhhcCCCcEEEEec
Q 004428 589 ---------F---------NADS---------------IA-------KADDARLE--YFTKKVFPKIKDSIQGGIMLFLS 626 (754)
Q Consensus 589 ---------~---------~~~s---------------~~-------~~~d~Rf~--yF~~~iLp~l~~~~~~~tLIFv~ 626 (754)
. ..++ .. .....|.+ -.+ .++-.|.+...-+++|||=
T Consensus 497 ~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l-~lin~L~k~~lLP~VvFvF 575 (1248)
T KOG0947|consen 497 KGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWL-DLINHLRKKNLLPVVVFVF 575 (1248)
T ss_pred hcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHH-HHHHHHhhcccCceEEEEE
Confidence 0 0000 00 00011221 111 2444455667789999999
Q ss_pred chhcHHHHHHHHHhCCCceEe----e------------cCCCCHHHHHHHHH-----------------------HHhcC
Q 004428 627 SYFEFVRLRNFLKSQNASFCL----L------------GDYTEPSDISRARV-----------------------WFFEG 667 (754)
Q Consensus 627 Sy~d~vrlrn~Lk~~~~~f~~----I------------hey~sq~~r~rar~-----------------------~F~~G 667 (754)
|+..+++-+.+|...++.-.. | .++..-.++.++++ .|..|
T Consensus 576 SkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrG 655 (1248)
T KOG0947|consen 576 SKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRG 655 (1248)
T ss_pred ccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcC
Confidence 999999999998765432111 1 11111122244433 47888
Q ss_pred CccEEEEcccccccCccccCCCCeEEEccCCCC---------CCchhhhccccCCCC---CceEEEEechh
Q 004428 668 KRKMILYTERSHFYHRYKIRGIQNLIIYSLPER---------KEFYPEIVNMLEGSH---NMTCTVLFSRF 726 (754)
Q Consensus 668 ~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~---------pefY~erigrt~ra~---~g~~~~L~sk~ 726 (754)
=++||.|||-+| =|...+ .+.|||-++-.+ |--|..+.||.||-| .|+++.+....
T Consensus 656 lVKVLFATETFA--MGVNMP-ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 656 LVKVLFATETFA--MGVNMP-ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred ceEEEeehhhhh--hhcCCC-ceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 899999999988 888885 688998887643 556999999999876 68888877544
No 121
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.06 E-value=0.00024 Score=86.22 Aligned_cols=330 Identities=15% Similarity=0.217 Sum_probs=207.1
Q ss_pred CHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccc
Q 004428 259 SSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFL 338 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~R 338 (754)
...+.+.+..+.+-+=|+.+..|| .|||-----=+|.+...+
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTG---------cGKTTQvpQfiLd~~~~~----------------------------- 216 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETG---------CGKTTQVPQFILDEAIES----------------------------- 216 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCC---------CCchhhhhHHHHHHHHhc-----------------------------
Confidence 567788889999999999999998 566655445556666543
Q ss_pred cCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCC
Q 004428 339 DRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPS 418 (754)
Q Consensus 339 DQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~ 418 (754)
| ...++++==|-|=.|.-|.+.+.+=-... -|..
T Consensus 217 --~-~~~~IicTQPRRIsAIsvAeRVa~ER~~~--------------~g~~----------------------------- 250 (924)
T KOG0920|consen 217 --G-AACNIICTQPRRISAISVAERVAKERGES--------------LGEE----------------------------- 250 (924)
T ss_pred --C-CCCeEEecCCchHHHHHHHHHHHHHhccc--------------cCCe-----------------------------
Confidence 1 23456777798988888887776421110 0100
Q ss_pred CceeeccCCCCCcccccccccHHHHhhhcc-cCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 419 DYQILFGGNNDDNFSIGIKFTRKSIKLYND-FYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 419 D~~~lF~GN~dD~FriGik~trk~lkLys~-Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
+|-+ ++|.+. ....-|..||-|=|...+.. .-+|+++-.+|+||++.=- .
T Consensus 251 ---------------VGYq-----vrl~~~~s~~t~L~fcTtGvLLr~L~~--------~~~l~~vthiivDEVHER~-i 301 (924)
T KOG0920|consen 251 ---------------VGYQ-----VRLESKRSRETRLLFCTTGVLLRRLQS--------DPTLSGVTHIIVDEVHERS-I 301 (924)
T ss_pred ---------------eeEE-----EeeecccCCceeEEEecHHHHHHHhcc--------CcccccCceeeeeeEEEcc-C
Confidence 0111 111111 13467899999988887752 2379999999999998543 3
Q ss_pred CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeec-cc----
Q 004428 498 NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACE-YK---- 572 (754)
Q Consensus 498 Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~-~~---- 572 (754)
|-+.+..+++.| +|+. ..=+.||.|||++ ..+|+.|+.+.+ .+.+.-. ++
T Consensus 302 ~~DflLi~lk~l--L~~~-------------------p~LkvILMSAT~d---ae~fs~YF~~~p-vi~i~grtfpV~~~ 356 (924)
T KOG0920|consen 302 NTDFLLILLKDL--LPRN-------------------PDLKVILMSATLD---AELFSDYFGGCP-VITIPGRTFPVKEY 356 (924)
T ss_pred CcccHHHHHHHH--hhhC-------------------CCceEEEeeeecc---hHHHHHHhCCCc-eEeecCCCcchHHH
Confidence 567788777765 3331 1246899999999 556788877643 4444210 00
Q ss_pred ---Cccccc---ccceeEEEEEeccCc-------ccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecchhcHHHHHHHH
Q 004428 573 ---GVLPKV---LLNVRQIYERFNADS-------IAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSSYFEFVRLRNFL 638 (754)
Q Consensus 573 ---g~i~~v---~~~I~Q~f~r~~~~s-------~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~Sy~d~vrlrn~L 638 (754)
.++..+ ...-.+. ..+..+ ..-.++.-+. ++..++-.|.. ...+.+|||.|.|.+-..+.+.|
T Consensus 357 fLEDil~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~id~~-Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L 433 (924)
T KOG0920|consen 357 FLEDILSKTGYVSEDDSAR--SGPERSQLRLARLKLWEPEIDYD-LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELL 433 (924)
T ss_pred HHHHHHHHhcccccccccc--cccccCccccccchhccccccHH-HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHh
Confidence 011111 1111111 000000 0001111111 23334444433 45789999999999999999999
Q ss_pred HhC-------CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCC---------
Q 004428 639 KSQ-------NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKE--------- 702 (754)
Q Consensus 639 k~~-------~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pe--------- 702 (754)
... .+-...+|.-++..+..+.-..-=.|..+|+++|-.|. =.+.|.+|-.||.-++=.-.-
T Consensus 434 ~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAE--TSITIdDVvyVIDsG~~Ke~~yD~~~~~s~ 511 (924)
T KOG0920|consen 434 EVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAE--TSITIDDVVYVIDSGLVKEKSYDPERKVSC 511 (924)
T ss_pred hhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHh--hcccccCeEEEEecCeeeeeeecccCCcch
Confidence 642 25567799999998888877777789999999999999 999999999999655432211
Q ss_pred ---chh------hhccccCCCCCceEEEEechhcHHHH
Q 004428 703 ---FYP------EIVNMLEGSHNMTCTVLFSRFDMLRL 731 (754)
Q Consensus 703 ---fY~------erigrt~ra~~g~~~~L~sk~D~~~L 731 (754)
.++ .|.||.||-..|.|.-||++....++
T Consensus 512 l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~ 549 (924)
T KOG0920|consen 512 LLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKL 549 (924)
T ss_pred hheeeccccchHHhcccccCccCCeeEEeechhhhhhc
Confidence 122 23445555557999999997765443
No 122
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.01 E-value=0.00098 Score=81.98 Aligned_cols=316 Identities=15% Similarity=0.159 Sum_probs=193.9
Q ss_pred CCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccc
Q 004428 253 GGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGIL 332 (754)
Q Consensus 253 g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~ 332 (754)
+|. +-|.|++++.++..+.-|+.||+|| +| ...-+-|+++. .++.
T Consensus 117 ~F~--LD~fQ~~a~~~Ler~esVlV~ApTs---sG----KTvVaeyAi~~---al~~----------------------- 161 (1041)
T COG4581 117 PFE--LDPFQQEAIAILERGESVLVCAPTS---SG----KTVVAEYAIAL---ALRD----------------------- 161 (1041)
T ss_pred CCC--cCHHHHHHHHHHhCCCcEEEEccCC---CC----cchHHHHHHHH---HHHc-----------------------
Confidence 554 4689999999999999999999998 32 33335677663 1111
Q ss_pred cccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCC
Q 004428 333 IGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNS 412 (754)
Q Consensus 333 ~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~ 412 (754)
.-||....|.+.|.-|....|......- .+..|
T Consensus 162 -----------~qrviYTsPIKALsNQKyrdl~~~fgdv-----------~~~vG------------------------- 194 (1041)
T COG4581 162 -----------GQRVIYTSPIKALSNQKYRDLLAKFGDV-----------ADMVG------------------------- 194 (1041)
T ss_pred -----------CCceEeccchhhhhhhHHHHHHHHhhhh-----------hhhcc-------------------------
Confidence 1238999999999999998887653210 01112
Q ss_pred CCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecch
Q 004428 413 QKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHAD 492 (754)
Q Consensus 413 ~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD 492 (754)
+..|. +.+. ..+.++|.|-==||-.+- ++.+.+--|+.+|+||.|
T Consensus 195 ----------L~TGD--------v~IN----------~~A~clvMTTEILRnMly-------rg~~~~~~i~~ViFDEvH 239 (1041)
T COG4581 195 ----------LMTGD--------VSIN----------PDAPCLVMTTEILRNMLY-------RGSESLRDIEWVVFDEVH 239 (1041)
T ss_pred ----------ceecc--------eeeC----------CCCceEEeeHHHHHHHhc-------cCcccccccceEEEEeee
Confidence 12221 1111 358899999866776665 455678999999999999
Q ss_pred hhhhcC----chHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC--HHHHHHHHHhhcCCCceEE
Q 004428 493 IILMQN----WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN--PEINAFFNHHCANYQGKVK 566 (754)
Q Consensus 493 ~mLmQN----w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~--peinsL~~~~~~N~~G~Vk 566 (754)
-|-++. |+.+. -.+|.. =|-++||||.+ .++...+.+. +..+-.|.
T Consensus 240 yi~D~eRG~VWEE~I------i~lP~~---------------------v~~v~LSATv~N~~EF~~Wi~~~-~~~~~~vv 291 (1041)
T COG4581 240 YIGDRERGVVWEEVI------ILLPDH---------------------VRFVFLSATVPNAEEFAEWIQRV-HSQPIHVV 291 (1041)
T ss_pred eccccccchhHHHHH------HhcCCC---------------------CcEEEEeCCCCCHHHHHHHHHhc-cCCCeEEE
Confidence 997433 55432 235653 48999999998 3444444321 22111121
Q ss_pred EeecccCcccccccceeE-------EEEEeccCcc--------------------cchhH-----------------HHH
Q 004428 567 LACEYKGVLPKVLLNVRQ-------IYERFNADSI--------------------AKADD-----------------ARL 602 (754)
Q Consensus 567 v~~~~~g~i~~v~~~I~Q-------~f~r~~~~s~--------------------~~~~d-----------------~Rf 602 (754)
.....+ .++.| +|--++.... .+..+ .+-
T Consensus 292 ~t~~Rp-------vPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 364 (1041)
T COG4581 292 STEHRP-------VPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGP 364 (1041)
T ss_pred eecCCC-------CCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCccccc
Confidence 111100 01111 1111111100 00000 000
Q ss_pred HHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC----------------------------CCc----------
Q 004428 603 EYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ----------------------------NAS---------- 644 (754)
Q Consensus 603 ~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~----------------------------~~~---------- 644 (754)
..+ ..++..+.....-++++||=|..+|......|... +++
T Consensus 365 ~~~-~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L 443 (1041)
T COG4581 365 AGR-PEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALL 443 (1041)
T ss_pred ccc-hHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHH
Confidence 000 12444555556778999999999998877766421 111
Q ss_pred ---eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccC---------CCCCCchhhhccccC
Q 004428 645 ---FCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSL---------PERKEFYPEIVNMLE 712 (754)
Q Consensus 645 ---f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~l---------P~~pefY~erigrt~ 712 (754)
.+.=|..+=+.-+...=..|..|-++|+.+||.++ -|+..+ +++|+|+.+ +-.|.-|..+.||.|
T Consensus 444 ~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s--~GiNmP-artvv~~~l~K~dG~~~r~L~~gEy~QmsGRAG 520 (1041)
T COG4581 444 LRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFA--IGINMP-ARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAG 520 (1041)
T ss_pred hhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhh--hhcCCc-ccceeeeeeEEecCCceeecChhHHHHhhhhhc
Confidence 01123444455555566789999999999999988 997774 789999987 556778999999999
Q ss_pred CCC---CceEEEEec
Q 004428 713 GSH---NMTCTVLFS 724 (754)
Q Consensus 713 ra~---~g~~~~L~s 724 (754)
|.| .|+++++-.
T Consensus 521 RRGlD~~G~vI~~~~ 535 (1041)
T COG4581 521 RRGLDVLGTVIVIEP 535 (1041)
T ss_pred cccccccceEEEecC
Confidence 876 588888744
No 123
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.80 E-value=0.00026 Score=82.32 Aligned_cols=203 Identities=18% Similarity=0.157 Sum_probs=128.8
Q ss_pred CCceeEEEEecchhh-hhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhh
Q 004428 480 LSSIEVLIIDHADII-LMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHC 558 (754)
Q Consensus 480 LSSIEiLVlDeAD~m-LmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~ 558 (754)
|+|-.++||||||-= | |..-+|..+ -|+.|+|+= =-.|+-|||+..+= |+.|+
T Consensus 376 LasYSViiiDEAHERTL-----~TDILfgLv---------KDIar~Rpd---------LKllIsSAT~DAek---FS~fF 429 (902)
T KOG0923|consen 376 LASYSVIIVDEAHERTL-----HTDILFGLV---------KDIARFRPD---------LKLLISSATMDAEK---FSAFF 429 (902)
T ss_pred ccceeEEEeehhhhhhh-----hhhHHHHHH---------HHHHhhCCc---------ceEEeeccccCHHH---HHHhc
Confidence 999999999999853 2 122222222 156666632 24688899999763 33444
Q ss_pred cCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHH
Q 004428 559 ANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFL 638 (754)
Q Consensus 559 ~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~L 638 (754)
-+.+ |-..|.. --+|.-.|..-+. .| .+..-+.+||..-..+..+-+|||..--.++..+...|
T Consensus 430 Ddap--IF~iPGR-------RyPVdi~Yt~~PE------Ad-YldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l 493 (902)
T KOG0923|consen 430 DDAP--IFRIPGR-------RYPVDIFYTKAPE------AD-YLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENL 493 (902)
T ss_pred cCCc--EEeccCc-------ccceeeecccCCc------hh-HHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHH
Confidence 4433 3333221 0112222222111 11 22222333432223345688999999998888888877
Q ss_pred Hh---------CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh--
Q 004428 639 KS---------QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI-- 707 (754)
Q Consensus 639 k~---------~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er-- 707 (754)
+. ..+-.+.|+..+++....+.-.--=.|-.+|.|||..|- --+.|.||..||.=+.-.. .-|.-|
T Consensus 494 ~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAE--TSlTIdgI~yViDpGf~K~-nsynprtG 570 (902)
T KOG0923|consen 494 KERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAE--TSLTIDGIKYVIDPGFVKQ-NSYNPRTG 570 (902)
T ss_pred HHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchh--hceeecCeEEEecCccccc-cCcCCCcC
Confidence 54 257789999999999888776656678899999999999 9999999999996444321 123333
Q ss_pred -----------------ccccCCCCCceEEEEechhc
Q 004428 708 -----------------VNMLEGSHNMTCTVLFSRFD 727 (754)
Q Consensus 708 -----------------igrt~ra~~g~~~~L~sk~D 727 (754)
.||.||.+-|.|.-|||.|-
T Consensus 571 mesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~a 607 (902)
T KOG0923|consen 571 MESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWA 607 (902)
T ss_pred ceeEEEeeechhhhhhhccccCCCCCCceEEeechhh
Confidence 44444555799999999764
No 124
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.77 E-value=0.0049 Score=71.05 Aligned_cols=195 Identities=15% Similarity=0.233 Sum_probs=129.4
Q ss_pred CceeEEEEecchhhh--hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhh
Q 004428 481 SSIEVLIIDHADIIL--MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHC 558 (754)
Q Consensus 481 SSIEiLVlDeAD~mL--mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~ 558 (754)
.-.|+.||||.-.|- .-.|..-..++... -++.|- .| .|.+-.|.++.|
T Consensus 274 ~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~---AdEiHL-----------CG---------------epsvldlV~~i~ 324 (700)
T KOG0953|consen 274 TPYEVAVIDEIQMMRDPSRGWAWTRALLGLA---ADEIHL-----------CG---------------EPSVLDLVRKIL 324 (700)
T ss_pred CceEEEEehhHHhhcCcccchHHHHHHHhhh---hhhhhc-----------cC---------------CchHHHHHHHHH
Confidence 357899999999886 45677666555431 222211 11 244555666655
Q ss_pred cCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHH
Q 004428 559 ANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFL 638 (754)
Q Consensus 559 ~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~L 638 (754)
.--.-.|.+ ..|.|+..-.+. ..++-.|..-..+-++ .|=|+.+---+...+
T Consensus 325 k~TGd~vev----------------~~YeRl~pL~v~-----------~~~~~sl~nlk~GDCv-V~FSkk~I~~~k~kI 376 (700)
T KOG0953|consen 325 KMTGDDVEV----------------REYERLSPLVVE-----------ETALGSLSNLKPGDCV-VAFSKKDIFTVKKKI 376 (700)
T ss_pred hhcCCeeEE----------------EeecccCcceeh-----------hhhhhhhccCCCCCeE-EEeehhhHHHHHHHH
Confidence 542212222 235555433321 1344445443444444 455777877888888
Q ss_pred HhCCCc-eEeecCCCCHHHHHHHHHHHhc--CCccEEEEcccccccCccccCCCCeEEEccCCCCCCc---------hhh
Q 004428 639 KSQNAS-FCLLGDYTEPSDISRARVWFFE--GKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEF---------YPE 706 (754)
Q Consensus 639 k~~~~~-f~~Ihey~sq~~r~rar~~F~~--G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pef---------Y~e 706 (754)
.+.+.. ++.|.|...+.-|..--..|.+ +++.||||||-.. =|+.+ +|++||||++=.+..- -..
T Consensus 377 E~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIG--MGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQ 453 (700)
T KOG0953|consen 377 EKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIG--MGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQ 453 (700)
T ss_pred HHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccc--ccccc-ceeEEEEeecccCCcccceeccHHHHHH
Confidence 887665 9999999999999888888987 9999999999988 99998 9999999999743321 233
Q ss_pred hccccCCCC----CceEEEEechhcHHHHHHHhC
Q 004428 707 IVNMLEGSH----NMTCTVLFSRFDMLRLERIVG 736 (754)
Q Consensus 707 rigrt~ra~----~g~~~~L~sk~D~~~LErIVG 736 (754)
+.||.||-+ .|.+++|. +.|...|-+|+.
T Consensus 454 IAGRAGRf~s~~~~G~vTtl~-~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 454 IAGRAGRFGSKYPQGEVTTLH-SEDLKLLKRILK 486 (700)
T ss_pred HhhcccccccCCcCceEEEee-HhhHHHHHHHHh
Confidence 467877654 58888876 467888877765
No 125
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.76 E-value=0.0053 Score=74.85 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=95.1
Q ss_pred HHhHHhhh--cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ccEEEEcccccccCcc
Q 004428 608 KVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RKMILYTERSHFYHRY 684 (754)
Q Consensus 608 ~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~ILL~TErahffRr~ 684 (754)
.|+..+.. ....+|||-+.|-..-..|.+.|++.+++.-.++.--. ++...+-. ..|+ -.|-|||-.|. ||-
T Consensus 437 Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~--~~EA~IIa-~AG~~GaVTIATNMAG--RGT 511 (913)
T PRK13103 437 AIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH--EKEAEIIA-QAGRPGALTIATNMAG--RGT 511 (913)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc--hhHHHHHH-cCCCCCcEEEeccCCC--CCC
Confidence 44444433 34678999999999999999999999998877665322 22222211 4564 58999999999 999
Q ss_pred ccC-------------------------------------CCCeEEEccCCCCCCchhhhccccCCCCC-ceEEEEechh
Q 004428 685 KIR-------------------------------------GIQNLIIYSLPERKEFYPEIVNMLEGSHN-MTCTVLFSRF 726 (754)
Q Consensus 685 dIk-------------------------------------gV~~VIfY~lP~~pefY~erigrt~ra~~-g~~~~L~sk~ 726 (754)
||+ |==|||-=..|++--.=..+-||+||-|+ |++.-++|-.
T Consensus 512 DIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlE 591 (913)
T PRK13103 512 DILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 591 (913)
T ss_pred CEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcC
Confidence 997 55689988888866555555688998874 7777777766
Q ss_pred cHHHHHHHhCchHHHHhhh
Q 004428 727 DMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 727 D~~~LErIVGt~ra~~m~~ 745 (754)
|-+. |+.|..|..+|+.
T Consensus 592 D~Lm--r~fg~~~~~~~~~ 608 (913)
T PRK13103 592 DSLM--RIFASDRVKNFMK 608 (913)
T ss_pred cHHH--HhhCcHHHHHHHH
Confidence 6332 5688888888775
No 126
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.75 E-value=0.0034 Score=74.98 Aligned_cols=124 Identities=11% Similarity=0.045 Sum_probs=93.2
Q ss_pred HHhHHhhh--cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ccEEEEcccccccCcc
Q 004428 608 KVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RKMILYTERSHFYHRY 684 (754)
Q Consensus 608 ~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~ILL~TErahffRr~ 684 (754)
.|+..+.. ....++||.+.|-.....|...|++.+++...|+..-...+ ..+ -=..|+ -.|-|||-.|. ||-
T Consensus 415 Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E--A~I-Ia~AG~~gaVTIATNMAG--RGT 489 (764)
T PRK12326 415 AIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE--ARI-IAEAGKYGAVTVSTQMAG--RGT 489 (764)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH--HHH-HHhcCCCCcEEEEecCCC--Ccc
Confidence 34444433 35678999999999999999999999999999987533333 111 114464 48999999999 999
Q ss_pred ccC---------------CCCeEEEccCCCCCCchhhhccccCCCCC-ceEEEEechhcHHHHHHHhCch
Q 004428 685 KIR---------------GIQNLIIYSLPERKEFYPEIVNMLEGSHN-MTCTVLFSRFDMLRLERIVGSA 738 (754)
Q Consensus 685 dIk---------------gV~~VIfY~lP~~pefY~erigrt~ra~~-g~~~~L~sk~D~~~LErIVGt~ 738 (754)
||+ |==|||--..|++--.=..+.||+||-|+ |++.-+.|-.|-+. ++.|..
T Consensus 490 DIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDdl~--~~f~~~ 557 (764)
T PRK12326 490 DIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDDVV--AANLAG 557 (764)
T ss_pred CeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchhHH--HhcCch
Confidence 998 55699999999987777777899999884 77777777666332 555654
No 127
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.63 E-value=0.0024 Score=76.44 Aligned_cols=93 Identities=13% Similarity=0.124 Sum_probs=76.0
Q ss_pred CCcEEEEecchhcHHHHHHHHHhC----CCc-eEeecCCCCHHHHHHHHHHHhcCC--ccEEEEcccccccCccccCCCC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQ----NAS-FCLLGDYTEPSDISRARVWFFEGK--RKMILYTERSHFYHRYKIRGIQ 690 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~----~~~-f~~Ihey~sq~~r~rar~~F~~G~--~~ILL~TErahffRr~dIkgV~ 690 (754)
.++|||||.+...+.+|++.|.++ +-. +..|-+..++.+.. +..|...+ =+|-|+.|... =|+|++-|.
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~~--Id~f~~ke~~P~IaitvdlL~--TGiDvpev~ 501 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQAL--IDNFIDKEKYPRIAITVDLLT--TGVDVPEVV 501 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhHHH--HHHHHhcCCCCceEEehhhhh--cCCCchhee
Confidence 689999999999999999999875 223 44577766666554 66666533 37889999999 999999999
Q ss_pred eEEEccCCCCCCchhhhccccCCC
Q 004428 691 NLIIYSLPERKEFYPEIVNMLEGS 714 (754)
Q Consensus 691 ~VIfY~lP~~pefY~erigrt~ra 714 (754)
++||+.+=.+---|-.|+||.-|.
T Consensus 502 nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 502 NLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eeeehhhhhhHHHHHHHhcCcccc
Confidence 999999999999999999997654
No 128
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.61 E-value=0.0078 Score=70.74 Aligned_cols=199 Identities=16% Similarity=0.165 Sum_probs=124.6
Q ss_pred cCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhh
Q 004428 479 YLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHC 558 (754)
Q Consensus 479 fLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~ 558 (754)
.|-.-.++|||||+.=-- |-+-+.-+++.+-.--. -=..|+-||||..+= |..|+
T Consensus 465 ~L~kYSviImDEAHERsl-NtDilfGllk~~larRr---------------------dlKliVtSATm~a~k---f~nfF 519 (1042)
T KOG0924|consen 465 DLDKYSVIIMDEAHERSL-NTDILFGLLKKVLARRR---------------------DLKLIVTSATMDAQK---FSNFF 519 (1042)
T ss_pred hhhheeEEEechhhhccc-chHHHHHHHHHHHHhhc---------------------cceEEEeeccccHHH---HHHHh
Confidence 367788999999985421 44444444444311100 124688999999652 22333
Q ss_pred cCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh----cCCCcEEEEecchhcHHHH
Q 004428 559 ANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD----SIQGGIMLFLSSYFEFVRL 634 (754)
Q Consensus 559 ~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~----~~~~~tLIFv~Sy~d~vrl 634 (754)
-|.++. .| +|. .-+|.-+|.+.++.+ . +...+++... ...+-+|||++-..|..-.
T Consensus 520 gn~p~f-~I----pGR----TyPV~~~~~k~p~eD-------Y----Veaavkq~v~Ihl~~~~GdilIfmtGqediE~t 579 (1042)
T KOG0924|consen 520 GNCPQF-TI----PGR----TYPVEIMYTKTPVED-------Y----VEAAVKQAVQIHLSGPPGDILIFMTGQEDIECT 579 (1042)
T ss_pred CCCcee-ee----cCC----ccceEEEeccCchHH-------H----HHHHHhhheEeeccCCCCCEEEecCCCcchhHH
Confidence 444311 11 121 123555566655432 2 3345555432 3458899999977665443
Q ss_pred ----HHHHHh------CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCch
Q 004428 635 ----RNFLKS------QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFY 704 (754)
Q Consensus 635 ----rn~Lk~------~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY 704 (754)
...|.. .++.+..|..-+++.-..+.-+.--.|-.+++|||.+|- --+.|+||..||.-+.-.-. .|
T Consensus 580 ~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAE--TSLTi~gI~yVID~Gy~K~k-vy 656 (1042)
T KOG0924|consen 580 CDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAE--TSLTIPGIRYVIDTGYCKLK-VY 656 (1042)
T ss_pred HHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchh--hceeecceEEEEecCceeee-ec
Confidence 333332 267788888888887777766656678899999999999 99999999999987765422 23
Q ss_pred hhhcc-------------------ccCCCCCceEEEEech
Q 004428 705 PEIVN-------------------MLEGSHNMTCTVLFSR 725 (754)
Q Consensus 705 ~erig-------------------rt~ra~~g~~~~L~sk 725 (754)
.-++| |.||.+.|+|.-|||.
T Consensus 657 n~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe 696 (1042)
T KOG0924|consen 657 NPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTE 696 (1042)
T ss_pred ccccccceeEEEechhccchhhccccCCCCCcceeeehhh
Confidence 34444 4444457999999996
No 129
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.58 E-value=0.0018 Score=74.27 Aligned_cols=213 Identities=15% Similarity=0.135 Sum_probs=147.0
Q ss_pred cccCCceeEEEEecchhhh-----hcCch--HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHH
Q 004428 477 VDYLSSIEVLIIDHADIIL-----MQNWS--WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE 549 (754)
Q Consensus 477 ~dfLSSIEiLVlDeAD~mL-----mQNw~--hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pe 549 (754)
+||+..==+|||||-|+.+ |=|-+ --..+.++=-.+|+-.. =|+--.+.|.++..|||..|||..+.
T Consensus 326 ~DYfp~d~Ll~IDESHvTvPQi~gMynGDrsRK~~LVeyGFRLPSAlD------NRPL~feEf~~~~~q~i~VSATPg~~ 399 (663)
T COG0556 326 FDYFPDDFLLFIDESHVTVPQIGGMYNGDRSRKQTLVEYGFRLPSALD------NRPLKFEEFEAKIPQTIYVSATPGDY 399 (663)
T ss_pred HHhCCcceEEEEeccccchHhhhchhcccHHHHHHHHHhcCcCccccc------CCCCCHHHHHHhcCCEEEEECCCChH
Confidence 4455555679999999986 33433 23445555455665311 12222344566779999999999875
Q ss_pred HHHHHHHhhcCCCceE-E-EeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh--cCCCcEEEEe
Q 004428 550 INAFFNHHCANYQGKV-K-LACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD--SIQGGIMLFL 625 (754)
Q Consensus 550 insL~~~~~~N~~G~V-k-v~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv 625 (754)
=.... . |.| . +.. .+|.+... | -.|--.. +. | -++..|.. ....++||-+
T Consensus 400 E~e~s----~---~~vveQiIR-PTGLlDP~---i---evRp~~~---Qv-d--------DL~~EI~~r~~~~eRvLVTt 453 (663)
T COG0556 400 ELEQS----G---GNVVEQIIR-PTGLLDPE---I---EVRPTKG---QV-D--------DLLSEIRKRVAKNERVLVTT 453 (663)
T ss_pred HHHhc----c---CceeEEeec-CCCCCCCc---e---eeecCCC---cH-H--------HHHHHHHHHHhcCCeEEEEe
Confidence 43322 1 122 1 111 13533211 1 1121111 11 2 24444433 3458999999
Q ss_pred cchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccC-----CCC
Q 004428 626 SSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSL-----PER 700 (754)
Q Consensus 626 ~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~l-----P~~ 700 (754)
=|+.-+.-|..||+..|+.+.-+|....-=+|...+...+.|...|||---..- -|+||+.|..|...|- ..+
T Consensus 454 LTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLR--EGLDiPEVsLVAIlDADKeGFLRs 531 (663)
T COG0556 454 LTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR--EGLDLPEVSLVAILDADKEGFLRS 531 (663)
T ss_pred ehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhh--ccCCCcceeEEEEeecCccccccc
Confidence 999999999999999999999999999999999999999999999999999999 9999999999998874 444
Q ss_pred CCchhhhccccCCCCCceEEEEec
Q 004428 701 KEFYPEIVNMLEGSHNMTCTVLFS 724 (754)
Q Consensus 701 pefY~erigrt~ra~~g~~~~L~s 724 (754)
----+..|||.+|+.+|.|+- |.
T Consensus 532 e~SLIQtIGRAARN~~GkvIl-YA 554 (663)
T COG0556 532 ERSLIQTIGRAARNVNGKVIL-YA 554 (663)
T ss_pred cchHHHHHHHHhhccCCeEEE-Ec
Confidence 445566789999998999874 54
No 130
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.58 E-value=0.0094 Score=72.44 Aligned_cols=68 Identities=16% Similarity=0.065 Sum_probs=53.3
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ccEEEEcccccccCccccC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RKMILYTERSHFYHRYKIR 687 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~ILL~TErahffRr~dIk 687 (754)
...+|||-+.|-..-..|.+.|++.+++.-.++....+.++...+=. ..|+ -.|-|||-.|. ||-||+
T Consensus 423 ~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA-~AG~~G~VTIATNMAG--RGTDI~ 491 (870)
T CHL00122 423 TGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVA-QAGRKGSITIATNMAG--RGTDII 491 (870)
T ss_pred cCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHH-hcCCCCcEEEeccccC--CCcCee
Confidence 46789999999999999999999999999999886433222222111 2465 58999999999 999987
No 131
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.16 E-value=0.017 Score=70.23 Aligned_cols=138 Identities=13% Similarity=0.077 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHhHHhhh--cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ccEEEE
Q 004428 598 DDARLEYFTKKVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RKMILY 674 (754)
Q Consensus 598 ~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~ILL~ 674 (754)
.++++.. |+..+.. ....++||.|.|-.....|.++|++.|++...++.. +.++...+=. ..|+ -.|.||
T Consensus 408 ~~~K~~A----ii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk--~~e~EA~IIa-~AG~~GaVTIA 480 (925)
T PRK12903 408 KHAKWKA----VVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAK--QNAREAEIIA-KAGQKGAITIA 480 (925)
T ss_pred HHHHHHH----HHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeeccc--chhhHHHHHH-hCCCCCeEEEe
Confidence 4567664 4444433 245789999999999999999999999999888874 3344433332 5574 589999
Q ss_pred cccccccCccccCCCC--------eEEEccCCCCCCchhhhccccCCCCC-ceEEEEechhcHHHHHHHhCc-hHHHHhh
Q 004428 675 TERSHFYHRYKIRGIQ--------NLIIYSLPERKEFYPEIVNMLEGSHN-MTCTVLFSRFDMLRLERIVGS-AHAKKMV 744 (754)
Q Consensus 675 TErahffRr~dIkgV~--------~VIfY~lP~~pefY~erigrt~ra~~-g~~~~L~sk~D~~~LErIVGt-~ra~~m~ 744 (754)
|-.|. ||-||+=-. |||.-..|++--.=-.+-||+||-|+ |++.-+.|-.|-+ =|+.|. +|...|+
T Consensus 481 TNMAG--RGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L--~r~f~~~~ri~~~~ 556 (925)
T PRK12903 481 TNMAG--RGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQL--FRRFSNFDKIKEAF 556 (925)
T ss_pred ccccc--CCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHH--HHHhCCHHHHHHHH
Confidence 99999 999998433 99999999987777788899999884 7777777766633 366888 7777776
Q ss_pred hc
Q 004428 745 KS 746 (754)
Q Consensus 745 ~s 746 (754)
..
T Consensus 557 ~~ 558 (925)
T PRK12903 557 KK 558 (925)
T ss_pred Hh
Confidence 53
No 132
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.97 E-value=0.0011 Score=65.62 Aligned_cols=84 Identities=19% Similarity=0.334 Sum_probs=64.9
Q ss_pred hhcCCCcEEEEecchhcHHHHHHHHHhCCC--ceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCC--C
Q 004428 614 KDSIQGGIMLFLSSYFEFVRLRNFLKSQNA--SFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRG--I 689 (754)
Q Consensus 614 ~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~--~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkg--V 689 (754)
.....+++|||+|||..-..+.++++.... ....+.+ +...+...++.|+.++..||+++-+..|+-|+|++| .
T Consensus 5 ~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~ 82 (167)
T PF13307_consen 5 ISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLL 82 (167)
T ss_dssp HHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESE
T ss_pred HhcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchh
Confidence 344569999999999999999999987642 2233444 477888899999999999999999888889999998 8
Q ss_pred CeEEEccCCC
Q 004428 690 QNLIIYSLPE 699 (754)
Q Consensus 690 ~~VIfY~lP~ 699 (754)
+.||-.+||-
T Consensus 83 r~vii~glPf 92 (167)
T PF13307_consen 83 RAVIIVGLPF 92 (167)
T ss_dssp EEEEEES---
T ss_pred heeeecCCCC
Confidence 8999999994
No 133
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.97 E-value=0.096 Score=63.32 Aligned_cols=88 Identities=10% Similarity=0.074 Sum_probs=65.4
Q ss_pred HHHHHHHHHhC--CCceEeecCCCCHHH--HHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccC------CCC
Q 004428 631 FVRLRNFLKSQ--NASFCLLGDYTEPSD--ISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSL------PER 700 (754)
Q Consensus 631 ~vrlrn~Lk~~--~~~f~~Ihey~sq~~--r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~l------P~~ 700 (754)
..||..-|++. ++.+..+..+++..+ -...+..|..|+..|||-|-..+ .|+++++|..|.-.+. |+.
T Consensus 493 terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmia--KG~~fp~vtLVgvl~aD~~L~~~Df 570 (730)
T COG1198 493 TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIA--KGHDFPNVTLVGVLDADTGLGSPDF 570 (730)
T ss_pred HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhh--cCCCcccceEEEEEechhhhcCCCc
Confidence 35666666664 788888888888766 45678999999999999999999 9999999999876543 321
Q ss_pred ------CCchhhhccccCCCC-CceEE
Q 004428 701 ------KEFYPEIVNMLEGSH-NMTCT 720 (754)
Q Consensus 701 ------pefY~erigrt~ra~-~g~~~ 720 (754)
...|....||.||.+ .|.++
T Consensus 571 RA~Er~fqll~QvaGRAgR~~~~G~Vv 597 (730)
T COG1198 571 RASERTFQLLMQVAGRAGRAGKPGEVV 597 (730)
T ss_pred chHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 122555678888875 45443
No 134
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.25 Score=59.66 Aligned_cols=153 Identities=19% Similarity=0.239 Sum_probs=79.9
Q ss_pred CCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcc
Q 004428 451 TSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLD 530 (754)
Q Consensus 451 ~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~ 530 (754)
...|-+-|-|=|+.-|++ |+. |+.-.++||||||-=-| |-+-+.-++..+ -|+|.-|-.
T Consensus 349 ~T~IkFMTDGVLLrEi~~-------Dfl-L~kYSvIIlDEAHERSv-nTDILiGmLSRi------------V~LR~k~~k 407 (1172)
T KOG0926|consen 349 DTSIKFMTDGVLLREIEN-------DFL-LTKYSVIILDEAHERSV-NTDILIGMLSRI------------VPLRQKYYK 407 (1172)
T ss_pred CceeEEecchHHHHHHHH-------hHh-hhhceeEEechhhhccc-hHHHHHHHHHHH------------HHHHHHHhh
Confidence 356777788888877762 342 78999999999986544 334344444332 133333222
Q ss_pred cCC--CccccEEEEcCCCCHH-HHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHH
Q 004428 531 GYS--RFYRQTVLLSYHPNPE-INAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTK 607 (754)
Q Consensus 531 ~~a--k~~RQTllFSAt~~pe-insL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~ 607 (754)
.+. +.. -.|+.|||+--. +.+ -++.+.+++-.|+|... + -.|.-.|.+ .+ .+|.--..|.+
T Consensus 408 e~~~~kpL-KLIIMSATLRVsDFte-nk~LFpi~pPlikVdAR------Q--fPVsIHF~k---rT---~~DYi~eAfrK 471 (1172)
T KOG0926|consen 408 EQCQIKPL-KLIIMSATLRVSDFTE-NKRLFPIPPPLIKVDAR------Q--FPVSIHFNK---RT---PDDYIAEAFRK 471 (1172)
T ss_pred hhcccCce-eEEEEeeeEEeccccc-CceecCCCCceeeeecc------c--CceEEEecc---CC---CchHHHHHHHH
Confidence 111 111 258889998632 100 01112233323333211 1 112223333 22 22333344444
Q ss_pred HHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC
Q 004428 608 KVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ 641 (754)
Q Consensus 608 ~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~ 641 (754)
+.. .-.+...+++||||--..+...|-..|++.
T Consensus 472 tc~-IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 472 TCK-IHKKLPPGGILVFVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred HHH-HhhcCCCCcEEEEEeChHHHHHHHHHHHhh
Confidence 332 123346899999999999988888877654
No 135
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.53 E-value=0.028 Score=67.75 Aligned_cols=90 Identities=14% Similarity=0.224 Sum_probs=67.4
Q ss_pred HhhhcCCCcEEEEecchhcHHHHHHHHHhCCC------ceEeecCCCCHHHHHHHHHHHhc----CCccEEEEccccccc
Q 004428 612 KIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNA------SFCLLGDYTEPSDISRARVWFFE----GKRKMILYTERSHFY 681 (754)
Q Consensus 612 ~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~------~f~~Ihey~sq~~r~rar~~F~~----G~~~ILL~TErahff 681 (754)
.+....++++|||.|||.--..+...+++.++ ....+.|-....++.+.++.|+. |+-.||+++=+-.|.
T Consensus 516 ~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~s 595 (705)
T TIGR00604 516 EFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGKVS 595 (705)
T ss_pred HHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCccc
Confidence 33445679999999999998988888876532 12233343333578889999965 566799999555566
Q ss_pred CccccCC--CCeEEEccCCC-CC
Q 004428 682 HRYKIRG--IQNLIIYSLPE-RK 701 (754)
Q Consensus 682 Rr~dIkg--V~~VIfY~lP~-~p 701 (754)
-|+|++| .+.||..+||- +|
T Consensus 596 EGIDf~~~~~r~ViivGlPf~~~ 618 (705)
T TIGR00604 596 EGIDFCDDLGRAVIMVGIPYEYT 618 (705)
T ss_pred CccccCCCCCcEEEEEccCCCCC
Confidence 9999999 79999999997 44
No 136
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.45 E-value=0.032 Score=67.23 Aligned_cols=80 Identities=15% Similarity=0.236 Sum_probs=60.4
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHh----cCCccEEEEcccccccCccccCC--C
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQ-NASFCLLGDYTEPSDISRARVWFF----EGKRKMILYTERSHFYHRYKIRG--I 689 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~-~~~f~~Ihey~sq~~r~rar~~F~----~G~~~ILL~TErahffRr~dIkg--V 689 (754)
..+++|||++||..-..+...|... +.. +.+++. ..+.+.+..|+ .|+..||++|.- |.-|+|++| .
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~s--f~EGVD~pGd~l 606 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQS--FAEGLDLPGDYL 606 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEecc--ccccccCCCCce
Confidence 5678999999999999999999753 332 344442 24556665565 578899999954 669999998 7
Q ss_pred CeEEEccCCC-CCC
Q 004428 690 QNLIIYSLPE-RKE 702 (754)
Q Consensus 690 ~~VIfY~lP~-~pe 702 (754)
++||...||- .|+
T Consensus 607 ~~vII~kLPF~~p~ 620 (697)
T PRK11747 607 TQVIITKIPFAVPD 620 (697)
T ss_pred EEEEEEcCCCCCCC
Confidence 9999999994 453
No 137
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.43 E-value=0.89 Score=52.56 Aligned_cols=195 Identities=22% Similarity=0.204 Sum_probs=117.7
Q ss_pred cCCceeEEEEecchh------hhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHH
Q 004428 479 YLSSIEVLIIDHADI------ILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINA 552 (754)
Q Consensus 479 fLSSIEiLVlDeAD~------mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peins 552 (754)
+|++-.++|||||+. +||+ -+.+++. + -|. =..++.|||....
T Consensus 156 ~l~~y~viiLDeahERtlATDiLmG---llk~v~~--~-rpd----------------------Lk~vvmSatl~a~--- 204 (699)
T KOG0925|consen 156 LLGRYGVIILDEAHERTLATDILMG---LLKEVVR--N-RPD----------------------LKLVVMSATLDAE--- 204 (699)
T ss_pred ccccccEEEechhhhhhHHHHHHHH---HHHHHHh--h-CCC----------------------ceEEEeecccchH---
Confidence 699999999999985 3343 2233321 1 131 3478999999754
Q ss_pred HHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHH
Q 004428 553 FFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFV 632 (754)
Q Consensus 553 L~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~v 632 (754)
-|++|..|.+ -+.|- | ...++- |+- +.+ + -.+++--+.+++..-.....+-+|||.+.-.+-.
T Consensus 205 Kfq~yf~n~P-ll~vp----g-----~~PvEi-~Yt---~e~--e-rDylEaairtV~qih~~ee~GDilvFLtgeeeIe 267 (699)
T KOG0925|consen 205 KFQRYFGNAP-LLAVP----G-----THPVEI-FYT---PEP--E-RDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIE 267 (699)
T ss_pred HHHHHhCCCC-eeecC----C-----CCceEE-Eec---CCC--C-hhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHH
Confidence 3556777765 33332 2 112222 322 211 1 2356655555654444456789999999988877
Q ss_pred HHHHHHHhC---------CCceEeecCCCCHHHH-HHHHHHHhcC--CccEEEEcccccccCccccCCCCeEEEccCCCC
Q 004428 633 RLRNFLKSQ---------NASFCLLGDYTEPSDI-SRARVWFFEG--KRKMILYTERSHFYHRYKIRGIQNLIIYSLPER 700 (754)
Q Consensus 633 rlrn~Lk~~---------~~~f~~Ihey~sq~~r-~rar~~F~~G--~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~ 700 (754)
..-..+..+ .+++..++ -.|.+| -+....=.+| ..+|.|.|-.|- --+.|.||.+||.-++-..
T Consensus 268 ~aC~~i~re~~~L~~~~g~l~v~PLy--P~~qq~iFep~p~~~~~~~~RkvVvstniae--tsltidgiv~VIDpGf~kq 343 (699)
T KOG0925|consen 268 DACRKISREVDNLGPQVGPLKVVPLY--PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAE--TSLTIDGIVFVIDPGFSKQ 343 (699)
T ss_pred HHHHHHHHHHHhhccccCCceEEecC--chhhccccCCCCcccCCCccceEEEEecchh--eeeeeccEEEEecCchhhh
Confidence 666666532 35667777 222222 1111111123 369999999999 7799999999998776544
Q ss_pred CCchhhh-------------------ccccCCCCCceEEEEechh
Q 004428 701 KEFYPEI-------------------VNMLEGSHNMTCTVLFSRF 726 (754)
Q Consensus 701 pefY~er-------------------igrt~ra~~g~~~~L~sk~ 726 (754)
.. |.-| .||.||..-|+|..||++.
T Consensus 344 kV-YNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~ 387 (699)
T KOG0925|consen 344 KV-YNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEE 387 (699)
T ss_pred cc-cCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHH
Confidence 33 3333 3444555579999999964
No 138
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=96.43 E-value=0.64 Score=55.99 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=85.0
Q ss_pred hhhcCCCcEEEEecchhcHHHHHHHHHhCCCce---------------Eeec-CCCCHHHHHHHH---------------
Q 004428 613 IKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASF---------------CLLG-DYTEPSDISRAR--------------- 661 (754)
Q Consensus 613 l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f---------------~~Ih-ey~sq~~r~rar--------------- 661 (754)
+......++|||.=|+.|+..++-.|.+..++- .+++ ++..-.++...+
T Consensus 378 i~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLL 457 (1041)
T KOG0948|consen 378 IMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLL 457 (1041)
T ss_pred HHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccch
Confidence 333456789999999999999998887765541 1111 222222222222
Q ss_pred --------HHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCC---------CCchhhhccccCCCC---CceEEE
Q 004428 662 --------VWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPER---------KEFYPEIVNMLEGSH---NMTCTV 721 (754)
Q Consensus 662 --------~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~---------pefY~erigrt~ra~---~g~~~~ 721 (754)
=.|..|=+++|.|||-|+ =|+..+ .++|+|-.+-.. .=-|+.+.||.||-| .|.|+.
T Consensus 458 PIlKE~IEILFqEGLvKvLFATETFs--iGLNMP-AkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIl 534 (1041)
T KOG0948|consen 458 PILKEVIEILFQEGLVKVLFATETFS--IGLNMP-AKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVIL 534 (1041)
T ss_pred HHHHHHHHHHHhccHHHHHHhhhhhh--hccCCc-ceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEE
Confidence 258889999999999988 999885 688888776532 234999999999876 699999
Q ss_pred EechhcHHHHHHHhCchHHHHhhhcCC
Q 004428 722 LFSRFDMLRLERIVGSAHAKKMVKSEK 748 (754)
Q Consensus 722 L~sk~D~~~LErIVGt~ra~~m~~s~~ 748 (754)
++... +.-.-|..|+++..
T Consensus 535 miDek--------m~~~~ak~m~kG~a 553 (1041)
T KOG0948|consen 535 MIDEK--------MEPQVAKDMLKGSA 553 (1041)
T ss_pred EecCc--------CCHHHHHHHhcCCC
Confidence 98643 22334556666554
No 139
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.00 E-value=0.036 Score=65.89 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=66.6
Q ss_pred hcCCCcEEEEecchhcHHHHHHHHHhCCCc-eEeecCCCCHHHHHHHHHHHhcCCc-cEEEEcccccccCccccCCC--C
Q 004428 615 DSIQGGIMLFLSSYFEFVRLRNFLKSQNAS-FCLLGDYTEPSDISRARVWFFEGKR-KMILYTERSHFYHRYKIRGI--Q 690 (754)
Q Consensus 615 ~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~-f~~Ihey~sq~~r~rar~~F~~G~~-~ILL~TErahffRr~dIkgV--~ 690 (754)
....+++|||+|||..-.++..+|+..... ....++ +..+...+..|+.+.- .|||+|..+. -|.|++|= +
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~---~~~~~~~l~~f~~~~~~~~lv~~gsf~--EGVD~~g~~l~ 550 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQG---EDEREELLEKFKASGEGLILVGGGSFW--EGVDFPGDALR 550 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecC---CCcHHHHHHHHHHhcCCeEEEeecccc--CcccCCCCCee
Confidence 345679999999999999999999987664 333333 3344477888888776 9999999966 99999994 9
Q ss_pred eEEEccCCCC-CCch
Q 004428 691 NLIIYSLPER-KEFY 704 (754)
Q Consensus 691 ~VIfY~lP~~-pefY 704 (754)
.||...+|-- |+.+
T Consensus 551 ~vvI~~lPfp~p~dp 565 (654)
T COG1199 551 LVVIVGLPFPNPDDP 565 (654)
T ss_pred EEEEEecCCCCCCCH
Confidence 9999999965 4443
No 140
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=95.88 E-value=0.028 Score=60.71 Aligned_cols=72 Identities=11% Similarity=0.008 Sum_probs=58.7
Q ss_pred CCHHHHH----HhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccc
Q 004428 258 HSSKQRS----FFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILI 333 (754)
Q Consensus 258 pTpiQ~~----~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~ 333 (754)
|.|.|.+ +...+.++..+++.++|| +|||.+|++++|.++......
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTG---------tGKTl~~L~~al~~~~~~~~~--------------------- 58 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTG---------TGKTLSLLCLTLTWLRSFPER--------------------- 58 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCC---------cchhHHHHHHHHHHHHhCccc---------------------
Confidence 5789988 666778899999999998 999999999999998654210
Q ss_pred ccccccCCCCCceEEEEccchhHHHHHHHHHHHh
Q 004428 334 GDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 334 ~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L 367 (754)
....|++++++|..+..|++..+.++
T Consensus 59 --------~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 59 --------IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred --------ccccceeEEeccHHHHHHHHHHHHhc
Confidence 02358999999999999988888776
No 141
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=95.88 E-value=0.028 Score=60.71 Aligned_cols=72 Identities=11% Similarity=0.008 Sum_probs=58.7
Q ss_pred CCHHHHH----HhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccc
Q 004428 258 HSSKQRS----FFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILI 333 (754)
Q Consensus 258 pTpiQ~~----~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~ 333 (754)
|.|.|.+ +...+.++..+++.++|| +|||.+|++++|.++......
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTG---------tGKTl~~L~~al~~~~~~~~~--------------------- 58 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTG---------TGKTLSLLCLTLTWLRSFPER--------------------- 58 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCC---------cchhHHHHHHHHHHHHhCccc---------------------
Confidence 5789988 666778899999999998 999999999999998654210
Q ss_pred ccccccCCCCCceEEEEccchhHHHHHHHHHHHh
Q 004428 334 GDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 334 ~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L 367 (754)
....|++++++|..+..|++..+.++
T Consensus 59 --------~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 59 --------IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred --------ccccceeEEeccHHHHHHHHHHHHhc
Confidence 02358999999999999988888776
No 142
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=95.71 E-value=0.029 Score=59.78 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=33.4
Q ss_pred HHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEec
Q 004428 442 SIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDH 490 (754)
Q Consensus 442 ~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDe 490 (754)
++++... ..+.|.||||+||..+|+. +...|+++.++|||-
T Consensus 169 qv~~L~~-~~~~i~vGTP~Rl~kLle~-------~~L~l~~l~~ivlD~ 209 (252)
T PF14617_consen 169 QVKLLKK-TRVHIAVGTPGRLSKLLEN-------GALSLSNLKRIVLDW 209 (252)
T ss_pred HHHHHHh-CCceEEEeChHHHHHHHHc-------CCCCcccCeEEEEcC
Confidence 4555443 4689999999999999973 577899999999995
No 143
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=94.90 E-value=0.7 Score=57.67 Aligned_cols=136 Identities=15% Similarity=0.109 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhHHhhh--cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ccEEEEc
Q 004428 599 DARLEYFTKKVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RKMILYT 675 (754)
Q Consensus 599 d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~ILL~T 675 (754)
..+++ .|+..+.. ....+|||-+.|-..-..|...|++.+++.-.|+.-.- ++...+-. ..|+ -.|-|||
T Consensus 611 ~eK~~----Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h--~~EAeIVA-~AG~~GaVTIAT 683 (1112)
T PRK12901 611 REKYN----AVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH--QKEAEIVA-EAGQPGTVTIAT 683 (1112)
T ss_pred HHHHH----HHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch--hhHHHHHH-hcCCCCcEEEec
Confidence 45555 45544443 35678999999999999999999999998777765432 22222211 3354 4899999
Q ss_pred ccccccCccccC--------CCCeEEEccCCCCCCchhhhccccCCCCC-ceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 676 ERSHFYHRYKIR--------GIQNLIIYSLPERKEFYPEIVNMLEGSHN-MTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 676 ErahffRr~dIk--------gV~~VIfY~lP~~pefY~erigrt~ra~~-g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
-.|. ||-||+ |==|||--..|++.-.-..+-||+||-|+ |++.-++|-.|-+ =|+.|..|..+|+.
T Consensus 684 NMAG--RGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdL--mr~Fgs~ri~~~m~ 758 (1112)
T PRK12901 684 NMAG--RGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNL--MRLFGSERIAKVMD 758 (1112)
T ss_pred cCcC--CCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHH--HHhhCcHHHHHHHH
Confidence 9999 999999 77899999999988888888899999884 7777777766533 26689999988875
No 144
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=94.82 E-value=1.1 Score=56.60 Aligned_cols=313 Identities=14% Similarity=0.163 Sum_probs=167.9
Q ss_pred CHHHHHHhhhhhCCcc-EEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 259 SSKQRSFFSLCNSYRD-ILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~D-vl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
.|+|.++|+.+.+-+| |+.++++| +|||++-=+-+|+ ++
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~g---------sgkt~~ae~a~l~-----~~-------------------------- 1184 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNG---------SGKTACAELALLR-----PD-------------------------- 1184 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCC---------CchhHHHHHHhcC-----Cc--------------------------
Confidence 6899999999977665 55678777 8898877666655 11
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHH-hCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIR-LTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSK 416 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~-L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~K 416 (754)
+--++.-++|.-+.|........+ +....+ ++|...-|..
T Consensus 1185 -----~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G-------~~~~~l~ge~--------------------------- 1225 (1674)
T KOG0951|consen 1185 -----TIGRAVYIAPLEEIADEQYRDWEKKFSKLLG-------LRIVKLTGET--------------------------- 1225 (1674)
T ss_pred -----cceEEEEecchHHHHHHHHHHHHHhhccccC-------ceEEecCCcc---------------------------
Confidence 234789999999988776665543 333222 2444322211
Q ss_pred CCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhh
Q 004428 417 PSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILM 496 (754)
Q Consensus 417 P~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm 496 (754)
. -.+||.+ ..+|||+||-.--.+ . ...++++.|.|+++.+--
T Consensus 1226 --------------------s---~~lkl~~---~~~vii~tpe~~d~l-q-----------~iQ~v~l~i~d~lh~igg 1267 (1674)
T KOG0951|consen 1226 --------------------S---LDLKLLQ---KGQVIISTPEQWDLL-Q-----------SIQQVDLFIVDELHLIGG 1267 (1674)
T ss_pred --------------------c---cchHHhh---hcceEEechhHHHHH-h-----------hhhhcceEeeehhhhhcc
Confidence 0 1244444 489999999885433 2 466789999999987763
Q ss_pred cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCccc
Q 004428 497 QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLP 576 (754)
Q Consensus 497 QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~ 576 (754)
++-. +..|+ |-..-|-.|. .+..|=.-| |..++ .++.++ .|.. .|.+-+.+..
T Consensus 1268 ~~g~-v~evi------------~S~r~ia~q~----~k~ir~v~l-s~~la-na~d~i--g~s~-~~v~Nf~p~~----- 1320 (1674)
T KOG0951|consen 1268 VYGA-VYEVI------------CSMRYIASQL----EKKIRVVAL-SSSLA-NARDLI--GASS-SGVFNFSPSV----- 1320 (1674)
T ss_pred cCCc-eEEEE------------eeHHHHHHHH----HhheeEEEe-ehhhc-cchhhc--cccc-cceeecCccc-----
Confidence 3221 11110 1100011111 122232222 22221 112221 1110 1111111110
Q ss_pred ccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh--cCCCcEEEEecchhcHHHHHHHHH---------------
Q 004428 577 KVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLK--------------- 639 (754)
Q Consensus 577 ~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk--------------- 639 (754)
... ++.-..+-|+... -+.|+.-.++-.+..+.+ ....+++||+|+..++..++--|.
T Consensus 1321 R~~-Pl~i~i~~~~~~~----~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~ 1395 (1674)
T KOG0951|consen 1321 RPV-PLEIHIQSVDISH----FESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSEL 1395 (1674)
T ss_pred CCC-ceeEEEEEeccch----hHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHH
Confidence 011 1222223343322 345555444445545543 346789999999877665543221
Q ss_pred -------hCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEE------EccCCCCCC-ch-
Q 004428 640 -------SQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI------IYSLPERKE-FY- 704 (754)
Q Consensus 640 -------~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI------fY~lP~~pe-fY- 704 (754)
++.++.+.=|+.++..+..-.+..|..|.++|+|.+=+- - -++-..|+| +||--.+.. .|
T Consensus 1396 e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~~---~--~~~~~~~lVvvmgt~~ydg~e~~~~~y~ 1470 (1674)
T KOG0951|consen 1396 EECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRDC---Y--GTKLKAHLVVVMGTQYYDGKEHSYEDYP 1470 (1674)
T ss_pred hcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEccc---c--cccccceEEEEecceeecccccccccCc
Confidence 122333223999999999999999999999999988662 2 333333332 354443321 22
Q ss_pred ----hhhccccCCCCCceEEEEechhc
Q 004428 705 ----PEIVNMLEGSHNMTCTVLFSRFD 727 (754)
Q Consensus 705 ----~erigrt~ra~~g~~~~L~sk~D 727 (754)
.+++|++.| .|.|+.+...-+
T Consensus 1471 i~~ll~m~G~a~~--~~k~vi~~~~~~ 1495 (1674)
T KOG0951|consen 1471 IAELLQMVGLASG--AGKCVIMCHTPK 1495 (1674)
T ss_pred hhHHHHHhhhhcC--CccEEEEecCch
Confidence 345555544 457887776544
No 145
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=94.80 E-value=0.54 Score=49.22 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=19.2
Q ss_pred eEEEEccchhHHHHHHHHHHHhCC
Q 004428 346 KVLILLPLKSIALNVVKRLIRLTP 369 (754)
Q Consensus 346 kVLIL~PTRelA~qIv~~l~~L~~ 369 (754)
++|||||. .+..++..++.+..+
T Consensus 60 ~~LIv~P~-~l~~~W~~E~~~~~~ 82 (299)
T PF00176_consen 60 KTLIVVPS-SLLSQWKEEIEKWFD 82 (299)
T ss_dssp -EEEEE-T-TTHHHHHHHHHHHSG
T ss_pred ceeEeecc-chhhhhhhhhccccc
Confidence 48999999 888999999999874
No 146
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=94.71 E-value=0.5 Score=54.61 Aligned_cols=213 Identities=13% Similarity=0.151 Sum_probs=135.2
Q ss_pred eeEEEEecchhhhhcCch------HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHH
Q 004428 483 IEVLIIDHADIILMQNWS------WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNH 556 (754)
Q Consensus 483 IEiLVlDeAD~mLmQNw~------hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~ 556 (754)
-.++|+||.|.+-..--. .|..+.+|+-++.- .--+||= +..|-|..+.-.|+.|.+-++..+
T Consensus 309 ~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSG---TPavSRP--------~elytqi~avd~tlfp~f~efa~r 377 (689)
T KOG1000|consen 309 YRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSG---TPAVSRP--------SELYTQIRAVDHTLFPNFHEFAIR 377 (689)
T ss_pred ceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecC---CcccCCc--------hhhhhhhhhhcccccccHHHHHHH
Confidence 468999999987532211 23333333322210 0112221 234677777777888889999999
Q ss_pred hhcCCCceEEEeecccC-----------------------cccccccceeEEEEEeccCcccchh---------------
Q 004428 557 HCANYQGKVKLACEYKG-----------------------VLPKVLLNVRQIYERFNADSIAKAD--------------- 598 (754)
Q Consensus 557 ~~~N~~G~Vkv~~~~~g-----------------------~i~~v~~~I~Q~f~r~~~~s~~~~~--------------- 598 (754)
||.- ++++..-.|+| ++.++.++=+++.+.. ........
T Consensus 378 YCd~--k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~-~gr~da~~~~lv~~a~~~t~~~~ 454 (689)
T KOG1000|consen 378 YCDG--KQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVS-GGRIDARMDDLVKAAADYTKVNS 454 (689)
T ss_pred hcCc--cccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEc-CCccchHHHHHHHHhhhcchhhh
Confidence 9875 45555555544 2334445533333332 22110000
Q ss_pred ----------------HHHHHHHHHHHhHH--hhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHH
Q 004428 599 ----------------DARLEYFTKKVFPK--IKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRA 660 (754)
Q Consensus 599 ----------------d~Rf~yF~~~iLp~--l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~ra 660 (754)
.++..-|...|+.. |.+....+.|||+.-..--+-|..++.+.++.+.-|.|.+....|.-+
T Consensus 455 ~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll 534 (689)
T KOG1000|consen 455 MERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLL 534 (689)
T ss_pred hhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHH
Confidence 01112222223221 223456789999999999999999999999999999999999999999
Q ss_pred HHHHhcC-CccEEEEc-ccccccCccccCCCCeEEEccCCCCCCc------hhhhcccc
Q 004428 661 RVWFFEG-KRKMILYT-ERSHFYHRYKIRGIQNLIIYSLPERKEF------YPEIVNML 711 (754)
Q Consensus 661 r~~F~~G-~~~ILL~T-ErahffRr~dIkgV~~VIfY~lP~~pef------Y~erigrt 711 (754)
-+.|... +++|-|.+ .-+. =|+++.-.+.|||-.||-||-. =.||||-+
T Consensus 535 ~qsFQ~seev~VAvlsItA~g--vGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQk 591 (689)
T KOG1000|consen 535 CQSFQTSEEVRVAVLSITAAG--VGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQK 591 (689)
T ss_pred HHHhccccceEEEEEEEeecc--cceeeeccceEEEEEecCCCceEEechhhhhhcccc
Confidence 9999766 45554443 3344 7999999999999999999854 55666654
No 147
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=93.55 E-value=0.67 Score=55.95 Aligned_cols=119 Identities=13% Similarity=0.175 Sum_probs=89.8
Q ss_pred HHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC--ccEEEEcccccccCc
Q 004428 606 TKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK--RKMILYTERSHFYHR 683 (754)
Q Consensus 606 ~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~--~~ILL~TErahffRr 683 (754)
+.++||.|.. ...+||||-.-..--+-|-.|+.-.++.++-|.|.++-.+|.+|+..|..-. +-|.+.|=||. ==|
T Consensus 476 LDkLL~~Lk~-~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAG-GLG 553 (971)
T KOG0385|consen 476 LDKLLPKLKE-QGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAG-GLG 553 (971)
T ss_pred HHHHHHHHHh-CCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccc-ccc
Confidence 4577888764 4579999998888888888899999999999999999999999999997654 55656666665 367
Q ss_pred cccCCCCeEEEccCCCCCCchh---hhccccCCCCCceEEEEechh
Q 004428 684 YKIRGIQNLIIYSLPERKEFYP---EIVNMLEGSHNMTCTVLFSRF 726 (754)
Q Consensus 684 ~dIkgV~~VIfY~lP~~pefY~---erigrt~ra~~g~~~~L~sk~ 726 (754)
+.+-.+..||+||=-=||+.=. .|+-|+|-.....|+-|+|..
T Consensus 554 INL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 554 INLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred cccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 8888999999999888887532 223333322234556677643
No 148
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=93.51 E-value=0.6 Score=58.43 Aligned_cols=123 Identities=16% Similarity=0.146 Sum_probs=90.4
Q ss_pred hcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-cc-EEEEcccccccCccccCCCCeE
Q 004428 615 DSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RK-MILYTERSHFYHRYKIRGIQNL 692 (754)
Q Consensus 615 ~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~-ILL~TErahffRr~dIkgV~~V 692 (754)
+....++|||..-..-.+-|-.+|..+|+-++-|.|.++-.+|..-+..|...+ +- ++|.|=--. =|+.+-|.++|
T Consensus 1273 k~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg--vGiNLtgADTV 1350 (1958)
T KOG0391|consen 1273 KSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG--VGINLTGADTV 1350 (1958)
T ss_pred HhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc--cccccccCceE
Confidence 456689999999999999999999999999999999999999999999997765 33 344444333 67888899999
Q ss_pred EEccCCCCC------CchhhhccccCCCCCceEEEEechhcHHHHHHHhCchHHHHhh
Q 004428 693 IIYSLPERK------EFYPEIVNMLEGSHNMTCTVLFSRFDMLRLERIVGSAHAKKMV 744 (754)
Q Consensus 693 IfY~lP~~p------efY~erigrt~ra~~g~~~~L~sk~D~~~LErIVGt~ra~~m~ 744 (754)
||||===|| ....||||+|- +--..-|+|.+-.. |.|+....-++||
T Consensus 1351 vFYDsDwNPtMDaQAQDrChRIGqtR---DVHIYRLISe~TIE--eniLkkanqKr~L 1403 (1958)
T KOG0391|consen 1351 VFYDSDWNPTMDAQAQDRCHRIGQTR---DVHIYRLISERTIE--ENILKKANQKRML 1403 (1958)
T ss_pred EEecCCCCchhhhHHHHHHHhhcCcc---ceEEEEeeccchHH--HHHHhhhhHHHHH
Confidence 999976665 34667777664 34455566655332 4444444344444
No 149
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=93.47 E-value=0.34 Score=58.53 Aligned_cols=117 Identities=12% Similarity=0.135 Sum_probs=90.7
Q ss_pred Hh-HHhhhcCC-CcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC-CccEEEEcc-cccccCcc
Q 004428 609 VF-PKIKDSIQ-GGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEG-KRKMILYTE-RSHFYHRY 684 (754)
Q Consensus 609 iL-p~l~~~~~-~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G-~~~ILL~TE-rahffRr~ 684 (754)
+| +.+..... .++|||.+-...-.-|..+|+..++.++.++|.++...|......|..+ ...|++.+= -.. -|+
T Consensus 700 ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg--~gl 777 (866)
T COG0553 700 LLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGG--LGL 777 (866)
T ss_pred HHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccc--cce
Confidence 45 45443333 2899999999999999999999999999999999999999999999997 455555554 555 899
Q ss_pred ccCCCCeEEEccCCCCCCchhhhccc---cCCCCCceEEEEechhc
Q 004428 685 KIRGIQNLIIYSLPERKEFYPEIVNM---LEGSHNMTCTVLFSRFD 727 (754)
Q Consensus 685 dIkgV~~VIfY~lP~~pefY~erigr---t~ra~~g~~~~L~sk~D 727 (754)
..-+..+||.||+.-||..+...+.| +|.-..-.+.-++++.-
T Consensus 778 nLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 778 NLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred eecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 99999999999999999886554444 33333455666776554
No 150
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=93.28 E-value=4.2 Score=49.93 Aligned_cols=200 Identities=13% Similarity=0.155 Sum_probs=112.2
Q ss_pred cCCceeEEEEecchhhhhcCch----HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHH
Q 004428 479 YLSSIEVLIIDHADIILMQNWS----WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFF 554 (754)
Q Consensus 479 fLSSIEiLVlDeAD~mLmQNw~----hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~ 554 (754)
.|.+.++|||||+...++|... |+..++..|. ++|. .-...|+.-|+++...-.++
T Consensus 139 ~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~----------------~lI~----~ak~VI~~DA~ln~~tvdFl 198 (824)
T PF02399_consen 139 LLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLK----------------ELIR----NAKTVIVMDADLNDQTVDFL 198 (824)
T ss_pred cccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHH----------------HHHH----hCCeEEEecCCCCHHHHHHH
Confidence 5777899999999998877542 2222332221 1221 12467888999999988888
Q ss_pred HHhhcCCCceEEE-eecccC--------cc-cccccceeEEEEEecc--------------Ccccc-hhHHHHHHHHHHH
Q 004428 555 NHHCANYQGKVKL-ACEYKG--------VL-PKVLLNVRQIYERFNA--------------DSIAK-ADDARLEYFTKKV 609 (754)
Q Consensus 555 ~~~~~N~~G~Vkv-~~~~~g--------~i-~~v~~~I~Q~f~r~~~--------------~s~~~-~~d~Rf~yF~~~i 609 (754)
....-+ ..|.+ .+.|.+ ++ ..+....-.-..+-+. ..... ....... |...+
T Consensus 199 ~~~Rp~--~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-F~~~L 275 (824)
T PF02399_consen 199 ASCRPD--ENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETT-FFSEL 275 (824)
T ss_pred HHhCCC--CcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhh-HHHHH
Confidence 764322 23433 234332 00 0000000000000000 00000 0011223 44457
Q ss_pred hHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCC
Q 004428 610 FPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGI 689 (754)
Q Consensus 610 Lp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV 689 (754)
+..|. ....+-||++|..-..-+.++.+..+.++..+.+-.+..+++. =++.+|++||=+.- =|+.+...
T Consensus 276 ~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv~~------W~~~~VviYT~~it--vG~Sf~~~ 345 (824)
T PF02399_consen 276 LARLN--AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDVES------WKKYDVVIYTPVIT--VGLSFEEK 345 (824)
T ss_pred HHHHh--CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccccc------ccceeEEEEeceEE--EEeccchh
Confidence 66665 3467889998887777777877888888888887666665542 46799999999988 88887654
Q ss_pred --CeEEEc--cCCCCCCc--hhhhcccc
Q 004428 690 --QNLIIY--SLPERKEF--YPEIVNML 711 (754)
Q Consensus 690 --~~VIfY--~lP~~pef--Y~erigrt 711 (754)
+.|.-| .....|+- -..++||+
T Consensus 346 HF~~~f~yvk~~~~gpd~~s~~Q~lgRv 373 (824)
T PF02399_consen 346 HFDSMFAYVKPMSYGPDMVSVYQMLGRV 373 (824)
T ss_pred hceEEEEEecCCCCCCcHHHHHHHHHHH
Confidence 445555 22233442 22566665
No 151
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=93.04 E-value=0.3 Score=60.09 Aligned_cols=68 Identities=16% Similarity=0.070 Sum_probs=53.2
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ccEEEEcccccccCccccC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RKMILYTERSHFYHRYKIR 687 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~ILL~TErahffRr~dIk 687 (754)
...++||-+.|-..-..|.+.|++.|++.-.++....+.++...+=. ..|+ -.|-|||-.|. ||-||+
T Consensus 438 ~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa-~AG~~GaVTIATNMAG--RGTDIk 506 (939)
T PRK12902 438 QGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVA-QAGRKGAVTIATNMAG--RGTDII 506 (939)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHH-hcCCCCcEEEeccCCC--CCcCEe
Confidence 46789999999999999999999999999888885333233322211 2565 48999999999 999987
No 152
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=92.50 E-value=0.88 Score=55.08 Aligned_cols=122 Identities=15% Similarity=0.089 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ccEEEEcccc
Q 004428 600 ARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RKMILYTERS 678 (754)
Q Consensus 600 ~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~ILL~TEra 678 (754)
.++.++. .+||.++..+ .+||||-.=..--+-|--+|+..++.|.-+.|.|.-..|.--+..|...+ +.|.|-+=+|
T Consensus 761 gK~r~L~-~LLp~~k~~G-~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKA 838 (941)
T KOG0389|consen 761 GKCRKLK-ELLPKIKKKG-DRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKA 838 (941)
T ss_pred hhHhHHH-HHHHHHhhcC-CEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeecc
Confidence 4666544 6999997655 89999988777778888899999999999999999999999999998875 5555555555
Q ss_pred cccCccccCCCCeEEEccCCCCCCc------hhhhccccCCCCCceEEEEechhc
Q 004428 679 HFYHRYKIRGIQNLIIYSLPERKEF------YPEIVNMLEGSHNMTCTVLFSRFD 727 (754)
Q Consensus 679 hffRr~dIkgV~~VIfY~lP~~pef------Y~erigrt~ra~~g~~~~L~sk~D 727 (754)
.= -|+.+-.+.+||.||.--||.. =.||||-+- ..+++-|+|+.-
T Consensus 839 GG-~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtk---pVtV~rLItk~T 889 (941)
T KOG0389|consen 839 GG-FGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTK---PVTVYRLITKST 889 (941)
T ss_pred Cc-ceecccccceEEEeecCCCCcccchhHHHHHhhCCcc---eeEEEEEEecCc
Confidence 42 5889999999999999888854 445555443 467888998764
No 153
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=91.04 E-value=1.7 Score=46.95 Aligned_cols=69 Identities=10% Similarity=-0.089 Sum_probs=52.0
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
.|.. |-+.|--..=.+..|+ ++.=.|| .|||.+-+|++.=+.+..
T Consensus 74 ~g~~--p~~vQll~~l~L~~G~--laEm~TG---------EGKTli~~l~a~~~AL~G---------------------- 118 (266)
T PF07517_consen 74 LGLR--PYDVQLLGALALHKGR--LAEMKTG---------EGKTLIAALPAALNALQG---------------------- 118 (266)
T ss_dssp TS------HHHHHHHHHHHTTS--EEEESTT---------SHHHHHHHHHHHHHHTTS----------------------
T ss_pred cCCc--ccHHHHhhhhhcccce--eEEecCC---------CCcHHHHHHHHHHHHHhc----------------------
Confidence 4543 6789988887777777 6777888 899999999998877632
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLT 368 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~ 368 (754)
-.|=|++..--||.+=.+.+..+.
T Consensus 119 -------------~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 119 -------------KGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp -------------S-EEEEESSHHHHHHHHHHHHHHH
T ss_pred -------------CCcEEEeccHHHhhccHHHHHHHH
Confidence 258899999999999888887763
No 154
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=89.45 E-value=2.6 Score=50.74 Aligned_cols=137 Identities=15% Similarity=0.165 Sum_probs=104.9
Q ss_pred HHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCcccc
Q 004428 607 KKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKI 686 (754)
Q Consensus 607 ~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dI 686 (754)
..+||+|+. ...++|+|..-..-..-+-.||...+..+.-+.|.++-.+|.-....|.+..+-|.|.+-||. -=|+.+
T Consensus 1034 DeLL~kLka-egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG-GLGINL 1111 (1185)
T KOG0388|consen 1034 DELLPKLKA-EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG-GLGINL 1111 (1185)
T ss_pred HHHHHHhhc-CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC-cccccc
Confidence 467888764 457899999998889999999999999999999999999999999999998888777777775 357777
Q ss_pred CCCCeEEEccCCCCCCchhhhc---cccCCCCCceEEEEechhc--HHHHHHHhCchHHHHhhh
Q 004428 687 RGIQNLIIYSLPERKEFYPEIV---NMLEGSHNMTCTVLFSRFD--MLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 687 kgV~~VIfY~lP~~pefY~eri---grt~ra~~g~~~~L~sk~D--~~~LErIVGt~ra~~m~~ 745 (754)
-...+||||+--=||-.=..-+ -|+|-..+.++.-|+++.- -..|+|.--..-+.+|+-
T Consensus 1112 TAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm 1175 (1185)
T KOG0388|consen 1112 TAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVM 1175 (1185)
T ss_pred cccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHH
Confidence 7899999999877775543322 2333333567777887653 456677666666666653
No 155
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=89.38 E-value=1.1 Score=55.07 Aligned_cols=71 Identities=8% Similarity=-0.154 Sum_probs=55.8
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
.|.. |-++|--.-=+++.|+ ++.=+|| +|||.+-+|+++-+.+..
T Consensus 77 ~g~~--~~dvQlig~l~l~~G~--iaEm~TG---------EGKTLvA~l~a~l~al~G---------------------- 121 (796)
T PRK12906 77 LGLR--PFDVQIIGGIVLHEGN--IAEMKTG---------EGKTLTATLPVYLNALTG---------------------- 121 (796)
T ss_pred hCCC--CchhHHHHHHHHhcCC--cccccCC---------CCCcHHHHHHHHHHHHcC----------------------
Confidence 4543 6778877666777777 6777887 899999999999888632
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCc
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPD 370 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~ 370 (754)
-.|-|++||--||.|=.+.+..+...
T Consensus 122 -------------~~v~vvT~neyLA~Rd~e~~~~~~~~ 147 (796)
T PRK12906 122 -------------KGVHVVTVNEYLSSRDATEMGELYRW 147 (796)
T ss_pred -------------CCeEEEeccHHHHHhhHHHHHHHHHh
Confidence 25899999999999999999887543
No 156
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.46 E-value=35 Score=40.73 Aligned_cols=236 Identities=10% Similarity=0.053 Sum_probs=137.2
Q ss_pred cCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhh
Q 004428 479 YLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHC 558 (754)
Q Consensus 479 fLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~ 558 (754)
||=....++.|+.+..+.-+-.|+..+|..|..+-+ -+|-+ .-=|.+--|+|+-.-++-. +-+
T Consensus 409 ~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~-----------~F~~~----~~~~~~~~~~~~K~~~~~~--~~~ 471 (1034)
T KOG4150|consen 409 PVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIK-----------GFEAS----INMGVYDGDTPYKDRTRLR--SEL 471 (1034)
T ss_pred HHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHH-----------HHHhh----cCcceEeCCCCcCCHHHHH--HHh
Confidence 566777888999988876667788888877633221 11111 1246666677776544321 123
Q ss_pred cCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHH--HHHHhHHhhhcCCCcEEEEecchhcHHH---
Q 004428 559 ANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYF--TKKVFPKIKDSIQGGIMLFLSSYFEFVR--- 633 (754)
Q Consensus 559 ~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF--~~~iLp~l~~~~~~~tLIFv~Sy~d~vr--- 633 (754)
.|.. .+.+... .|+- .-...|..-+.+-+-+..-.|-++. ..+||.++.. ..-++|-||++..-+.-
T Consensus 472 ~~~~-E~~Li~~-DGSP-----s~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~-~~~R~IAFC~~R~~CEL~~~ 543 (1034)
T KOG4150|consen 472 ANLS-ELELVTI-DGSP-----SSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQ-HGLRCIAFCPSRKLCELVLC 543 (1034)
T ss_pred cCCc-ceEEEEe-cCCC-----CccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHH-cCCcEEEeccHHHHHHHHHH
Confidence 3322 3444322 2321 1112233333222222222232221 1234444332 34689999999876543
Q ss_pred -HHHHHHhCCCc----eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhc
Q 004428 634 -LRNFLKSQNAS----FCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIV 708 (754)
Q Consensus 634 -lrn~Lk~~~~~----f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~eri 708 (754)
+||.|.+.+-. ..+.-|.-+-++|.+.-+..++|+..=+|+|.-.. =|+||-+.+.||..+.|-+.--+-.-.
T Consensus 544 ~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALE--LGIDIG~LDAVl~~GFP~S~aNl~QQ~ 621 (1034)
T KOG4150|consen 544 LTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALE--LGIDIGHLDAVLHLGFPGSIANLWQQA 621 (1034)
T ss_pred HHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhh--hccccccceeEEEccCchhHHHHHHHh
Confidence 46666554321 22233444566777777778899999999999999 999999999999999998888777888
Q ss_pred cccCCCC-CceEEE--EechhcHHHH---HHHhCchHHH
Q 004428 709 NMLEGSH-NMTCTV--LFSRFDMLRL---ERIVGSAHAK 741 (754)
Q Consensus 709 grt~ra~-~g~~~~--L~sk~D~~~L---ErIVGt~ra~ 741 (754)
||.||-. ...++. .-++-|..-| +.+.|...+.
T Consensus 622 GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~E 660 (1034)
T KOG4150|consen 622 GRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEE 660 (1034)
T ss_pred ccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcce
Confidence 8888643 222222 2235555544 5566655544
No 157
>PRK14873 primosome assembly protein PriA; Provisional
Probab=87.51 E-value=24 Score=42.94 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=21.6
Q ss_pred eEEEEccchhHHHHHHHHHHHhCC
Q 004428 346 KVLILLPLKSIALNVVKRLIRLTP 369 (754)
Q Consensus 346 kVLIL~PTRelA~qIv~~l~~L~~ 369 (754)
+||||+|.-.|+.|+++.|....+
T Consensus 190 ~vLvLvPEi~lt~q~~~rl~~~f~ 213 (665)
T PRK14873 190 GALVVVPDQRDVDRLEAALRALLG 213 (665)
T ss_pred eEEEEecchhhHHHHHHHHHHHcC
Confidence 599999999999999999987654
No 158
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=86.35 E-value=30 Score=44.05 Aligned_cols=233 Identities=11% Similarity=0.095 Sum_probs=123.9
Q ss_pred CCCEEEeCchhHHHHHhhhhcccccCcccCC----ceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhh
Q 004428 451 TSDMIVASPINLHQKMTKAEENKEQDVDYLS----SIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQ 526 (754)
Q Consensus 451 ~sDIIVASPlgLr~lI~~~e~~k~rd~dfLS----SIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~ 526 (754)
.+.|+|||+==|+...... + ...-.+. .=.+|||||+|..-..=...|..++.-+.
T Consensus 562 ~apv~V~TIDQlL~a~~~~---r-~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~---------------- 621 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESH---R-GGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAG---------------- 621 (1110)
T ss_pred cCCeEEecHHHHHHHhhhc---c-cchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHH----------------
Confidence 4899999999888876421 1 0111111 24589999999885211234444444321
Q ss_pred hhcccCCCccccEEEEcCCCCHHHH-HHHHHhh----------cCCCceEEEeecc----cC---cc-------------
Q 004428 527 WYLDGYSRFYRQTVLLSYHPNPEIN-AFFNHHC----------ANYQGKVKLACEY----KG---VL------------- 575 (754)
Q Consensus 527 w~L~~~ak~~RQTllFSAt~~pein-sL~~~~~----------~N~~G~Vkv~~~~----~g---~i------------- 575 (754)
.+-.-.||.|||+||.+. .|+.-|+ ..+...+.|.+.. .. .+
T Consensus 622 -------~lG~~VlLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~F 694 (1110)
T TIGR02562 622 -------LLGSRVLLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDF 694 (1110)
T ss_pred -------HcCCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHH
Confidence 122568999999999955 4554442 1211223333321 00 00
Q ss_pred -----cccc-cceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh----c----C-C----CcEEEEecchhcHHHHHH
Q 004428 576 -----PKVL-LNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD----S----I-Q----GGIMLFLSSYFEFVRLRN 636 (754)
Q Consensus 576 -----~~v~-~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~----~----~-~----~~tLIFv~Sy~d~vrlrn 636 (754)
..+. ..+...-..++++............|...|+..+.. . . . +=-||=+.+-...+.+..
T Consensus 695 v~~R~~~L~~~p~~R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~ 774 (1110)
T TIGR02562 695 LRDRAVQLAKKPVRRLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQ 774 (1110)
T ss_pred HHHHHHHHhcCcccceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHH
Confidence 0000 012222333444333222333444455556655432 0 1 1 124788889999999999
Q ss_pred HHHhC----C--CceEeecCCCCHHHHHH---H-------------------HHHHhc----CCccEEEEcccccccCcc
Q 004428 637 FLKSQ----N--ASFCLLGDYTEPSDISR---A-------------------RVWFFE----GKRKMILYTERSHFYHRY 684 (754)
Q Consensus 637 ~Lk~~----~--~~f~~Ihey~sq~~r~r---a-------------------r~~F~~----G~~~ILL~TErahffRr~ 684 (754)
+|... + +.++..|.--....|+. - +....+ +..-|+|+|-+.- -|.
T Consensus 775 ~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E--~g~ 852 (1110)
T TIGR02562 775 FLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEE--VGR 852 (1110)
T ss_pred HHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEE--EEe
Confidence 99754 2 34566666543333332 1 111222 4678999999998 777
Q ss_pred ccCCCCeEEEccCCCCCCchhhhccccCCCC
Q 004428 685 KIRGIQNLIIYSLPERKEFYPEIVNMLEGSH 715 (754)
Q Consensus 685 dIkgV~~VIfY~lP~~pefY~erigrt~ra~ 715 (754)
||. -..+ |-=|....--+.+.||..|.+
T Consensus 853 D~d-fd~~--~~~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 853 DHD-YDWA--IADPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred ccc-CCee--eeccCcHHHHHHHhhcccccc
Confidence 773 3333 233555556677778877654
No 159
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=85.32 E-value=3.2 Score=50.27 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=60.4
Q ss_pred CCcEEEEecchhcHH----HHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEE
Q 004428 618 QGGIMLFLSSYFEFV----RLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~v----rlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI 693 (754)
..++||.+|+..=+. .++.+|...+++++.++|.++.+++...+....+|+..|+|+|= +-+.....++++..||
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~-~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTH-ALIQDDVEFHNLGLVI 388 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchH-HHhcccchhcccceEE
Confidence 458999999986555 45555566689999999999999999999999999999999994 2233555677787777
Q ss_pred E
Q 004428 694 I 694 (754)
Q Consensus 694 f 694 (754)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 3
No 160
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=84.98 E-value=4.2 Score=49.80 Aligned_cols=124 Identities=12% Similarity=0.040 Sum_probs=89.6
Q ss_pred cEEEEecchhcHHHHHHHHH-hCCCceEeecCCCCHHHHHHHHHHHhcCCc--cEEEEcccccccCccccCCCCeEEEcc
Q 004428 620 GIMLFLSSYFEFVRLRNFLK-SQNASFCLLGDYTEPSDISRARVWFFEGKR--KMILYTERSHFYHRYKIRGIQNLIIYS 696 (754)
Q Consensus 620 ~tLIFv~Sy~d~vrlrn~Lk-~~~~~f~~Ihey~sq~~r~rar~~F~~G~~--~ILL~TErahffRr~dIkgV~~VIfY~ 696 (754)
--.++|..|....+|-..|. -.|..++.++|.|++++|.+....|..-.- .|+|++==|- --|+-+=|.++||.||
T Consensus 596 ~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAg-g~GinLiGAsRlil~D 674 (776)
T KOG0390|consen 596 VKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAG-GEGLNLIGASRLILFD 674 (776)
T ss_pred eEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccc-cCceeecccceEEEeC
Confidence 34567788888888777664 469999999999999999999999977543 5666655553 4899999999999999
Q ss_pred CCCCCCchhhhccccCCCCC---ceEEEEechh--cHHHHHHHhCchHHHHhh
Q 004428 697 LPERKEFYPEIVNMLEGSHN---MTCTVLFSRF--DMLRLERIVGSAHAKKMV 744 (754)
Q Consensus 697 lP~~pefY~erigrt~ra~~---g~~~~L~sk~--D~~~LErIVGt~ra~~m~ 744 (754)
++=||--=..-+.|+=|.|. ..+.-|.+.. |-..+.|-.-.++...|+
T Consensus 675 ~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v 727 (776)
T KOG0390|consen 675 PDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMV 727 (776)
T ss_pred CCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheE
Confidence 99999988888888888773 2233344432 333444444444444443
No 161
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=83.75 E-value=3.4 Score=40.27 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=42.9
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCc-cEEEEcccccccCccccCC--CCeEEEccCCC
Q 004428 645 FCLLGDYTEPSDISRARVWFFEGKR-KMILYTERSHFYHRYKIRG--IQNLIIYSLPE 699 (754)
Q Consensus 645 f~~Ihey~sq~~r~rar~~F~~G~~-~ILL~TErahffRr~dIkg--V~~VIfY~lP~ 699 (754)
...+.+-.+..+....+..|+.... .||++|.+ |+-|+|++| .+.||..+||-
T Consensus 24 ~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~--~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 24 LLLLVQGEDGKETGKLLEKYVEACENAILLATAR--FSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccc--eecceecCCCCeeEEEEEecCC
Confidence 4455566666678889999987653 89999999 669999999 57999999994
No 162
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=83.69 E-value=3.9 Score=42.95 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=48.1
Q ss_pred CHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccc
Q 004428 259 SSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFL 338 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~R 338 (754)
|+-|.+++-. ....+++.|.-| +|||.+-+--++..|...
T Consensus 2 ~~eQ~~~i~~--~~~~~lV~a~AG---------SGKT~~l~~ri~~ll~~~----------------------------- 41 (315)
T PF00580_consen 2 TDEQRRIIRS--TEGPLLVNAGAG---------SGKTTTLLERIAYLLYEG----------------------------- 41 (315)
T ss_dssp -HHHHHHHHS---SSEEEEEE-TT---------SSHHHHHHHHHHHHHHTS-----------------------------
T ss_pred CHHHHHHHhC--CCCCEEEEeCCC---------CCchHHHHHHHHHhhccc-----------------------------
Confidence 6789998887 566677766544 889987655555444322
Q ss_pred cCCCCCceEEEEccchhHHHHHHHHHHHhCC
Q 004428 339 DRGFTRPKVLILLPLKSIALNVVKRLIRLTP 369 (754)
Q Consensus 339 DQGftRPkVLIL~PTRelA~qIv~~l~~L~~ 369 (754)
+....++|+|++||.+|..+.+.|..+.+
T Consensus 42 --~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 42 --GVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp --SSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred --cCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 12345699999999999999999998754
No 163
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=83.67 E-value=6.9 Score=49.77 Aligned_cols=114 Identities=13% Similarity=0.129 Sum_probs=87.8
Q ss_pred HHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC---CccEEEEcccccccC
Q 004428 606 TKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEG---KRKMILYTERSHFYH 682 (754)
Q Consensus 606 ~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G---~~~ILL~TErahffR 682 (754)
+.+|||.|+. ...+||||-.--.--+-|..||...+++|--|.|...-.-|..|+.+|..- ..=|||+|=-=. =
T Consensus 688 LDKLL~rLk~-~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGG--L 764 (1373)
T KOG0384|consen 688 LDKLLPRLKE-GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGG--L 764 (1373)
T ss_pred HHHHHHHHhc-CCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCc--c
Confidence 4567777764 447899999988888999999999999999999999999999999999653 467888884434 6
Q ss_pred ccccCCCCeEEEccCCCCCCc------hhhhccccCCCCCceEEEEech
Q 004428 683 RYKIRGIQNLIIYSLPERKEF------YPEIVNMLEGSHNMTCTVLFSR 725 (754)
Q Consensus 683 r~dIkgV~~VIfY~lP~~pef------Y~erigrt~ra~~g~~~~L~sk 725 (754)
|+.+--+.+||.||===||+- =.||||-. ....+.=|+|+
T Consensus 765 GINLatADTVIIFDSDWNPQNDLQAqARaHRIGQk---k~VnVYRLVTk 810 (1373)
T KOG0384|consen 765 GINLATADTVIIFDSDWNPQNDLQAQARAHRIGQK---KHVNVYRLVTK 810 (1373)
T ss_pred cccccccceEEEeCCCCCcchHHHHHHHHHhhccc---ceEEEEEEecC
Confidence 778888999999998777764 34555532 22334445553
No 164
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=83.32 E-value=3.1 Score=49.70 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=52.7
Q ss_pred CCHHHHHHh----hhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccc
Q 004428 258 HSSKQRSFF----SLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILI 333 (754)
Q Consensus 258 pTpiQ~~~i----p~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~ 333 (754)
|=|.|.+++ ..+.+++=+++.|+|| +|||.+|++|+|-+....
T Consensus 16 ~r~~Q~~~~~~v~~a~~~~~~~~iEapTG---------tGKTl~yL~~al~~~~~~------------------------ 62 (654)
T COG1199 16 PRPEQREMAEAVAEALKGGEGLLIEAPTG---------TGKTLAYLLPALAYAREE------------------------ 62 (654)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEECCCC---------ccHHHHHHHHHHHHHHHc------------------------
Confidence 456776655 3445555699999998 999999999999988643
Q ss_pred ccccccCCCCCceEEEEccchhHHHHHHHHHHHh
Q 004428 334 GDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 334 ~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L 367 (754)
..+|+|.++|+.+=.|+++....+
T Consensus 63 ----------~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 63 ----------GKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred ----------CCcEEEECCCHHHHHHHHHhhcch
Confidence 257899999999888888887765
No 165
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=82.39 E-value=12 Score=45.81 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=86.0
Q ss_pred CCCcEEEEecchhcHHHHHHHHH-hCCCceEeecCCCCHHHHHHHHHHHhcCC-ccE-EEEcccccccCccccCCCCeEE
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLK-SQNASFCLLGDYTEPSDISRARVWFFEGK-RKM-ILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk-~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~I-LL~TErahffRr~dIkgV~~VI 693 (754)
...++|+|-.+..--.-|-.+|. ..+++|+-+.|-++-+.|..-...|..+. +.| ||+|=+=. =|+.+-|+..||
T Consensus 545 qg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGG--LGlNLTgAnRVI 622 (923)
T KOG0387|consen 545 QGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGG--LGLNLTGANRVI 622 (923)
T ss_pred CCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccc--cccccccCceEE
Confidence 34599999999999999999999 68999999999999999999999999886 444 55555555 789999999999
Q ss_pred EccCCCCCCc---hhhhccccCCCCCceEEEEechh
Q 004428 694 IYSLPERKEF---YPEIVNMLEGSHNMTCTVLFSRF 726 (754)
Q Consensus 694 fY~lP~~pef---Y~erigrt~ra~~g~~~~L~sk~ 726 (754)
.|||-=||.. =.+|+=|+|--....+.=|.|.-
T Consensus 623 IfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 623 IFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred EECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 9999777765 45566566643345555566643
No 166
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=81.75 E-value=4.4 Score=48.58 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=61.1
Q ss_pred CCcEEEEecchhcHHH----HHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEE
Q 004428 618 QGGIMLFLSSYFEFVR----LRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vr----lrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI 693 (754)
..+++|-+|+..=+.. ++++|...+++++.++|.++.+++...+....+|+..|+|.|-.. ++....++++..||
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~l-l~~~~~~~~l~lvV 362 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHAL-IQEKVEFKRLALVI 362 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHH-HhccccccccceEE
Confidence 4589999999866554 455555568999999999999999999999999999999999643 45666777888777
No 167
>PRK05580 primosome assembly protein PriA; Validated
Probab=81.25 E-value=9.4 Score=46.36 Aligned_cols=76 Identities=8% Similarity=0.075 Sum_probs=63.9
Q ss_pred CCcEEEEecchhcHHHHHHHHHh-CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEcc
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKS-QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYS 696 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~-~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~ 696 (754)
..++||.+|+..-...+.+.|++ -+..++.+|+.++.+++.++......|+.+|+|.|=-+.| ..++++..||.=+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~---~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF---LPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc---ccccCCCEEEEEC
Confidence 46899999999998888888876 3788999999999999999999999999999999954443 3577888888654
No 168
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=81.04 E-value=5.4 Score=39.71 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=48.2
Q ss_pred CHHHHHHhhhhhCCcc-EEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 259 SSKQRSFFSLCNSYRD-ILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~D-vl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
.+-|..++-.+++..+ .++.++-| ||||.+ +.+++.++++.... .
T Consensus 3 n~~Q~~Ai~~~~~~~~~~~i~GpPG---------TGKT~~-l~~~i~~~~~~~~~--------------~---------- 48 (236)
T PF13086_consen 3 NESQREAIQSALSSNGITLIQGPPG---------TGKTTT-LASIIAQLLQRFKS--------------R---------- 48 (236)
T ss_dssp -HHHHHHHHHHCTSSE-EEEE-STT---------SSHHHH-HHHHHHHH-------------------------------
T ss_pred CHHHHHHHHHHHcCCCCEEEECCCC---------CChHHH-HHHHHHHhccchhh--------------h----------
Confidence 4689999999999999 55555444 899943 44666666432100 0
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHH
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIR 366 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~ 366 (754)
......++||++||...+-.+++.|.+
T Consensus 49 --~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 49 --SADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred --hhhccccceeecCCchhHHHHHHHHHh
Confidence 012356899999999999999999998
No 169
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=81.01 E-value=4.2 Score=50.66 Aligned_cols=102 Identities=15% Similarity=0.192 Sum_probs=87.3
Q ss_pred HHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC---ccEEEEccc
Q 004428 601 RLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK---RKMILYTER 677 (754)
Q Consensus 601 Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~---~~ILL~TEr 677 (754)
+|. ++..|||+|++. ..++|+|+.-..--.-+-.||.-.++.+.-+.|-|...+|...+..|..-. ..||+.|.+
T Consensus 711 KfE-LLDRiLPKLkat-gHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstra 788 (1157)
T KOG0386|consen 711 KFE-LLDRILPKLKAT-GHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRA 788 (1157)
T ss_pred HHH-HHHhhhHHHHhc-CcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecc
Confidence 443 567899999764 479999998877777778888889999999999999999999999997755 468899999
Q ss_pred ccccCccccCCCCeEEEccCCCCCCchhh
Q 004428 678 SHFYHRYKIRGIQNLIIYSLPERKEFYPE 706 (754)
Q Consensus 678 ahffRr~dIkgV~~VIfY~lP~~pefY~e 706 (754)
.. .|+.+.-..+||.||-=-+|+-..-
T Consensus 789 gg--lglNlQtadtviifdsdwnp~~d~q 815 (1157)
T KOG0386|consen 789 GG--LGLNLQTADTVIIFDSDWNPHQDLQ 815 (1157)
T ss_pred cc--cccchhhcceEEEecCCCCchhHHH
Confidence 88 9999999999999999999987643
No 170
>PRK10329 glutaredoxin-like protein; Provisional
Probab=80.84 E-value=2.2 Score=37.57 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=52.7
Q ss_pred cEEEEe-cchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEE
Q 004428 620 GIMLFL-SSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 620 ~tLIFv-~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI 693 (754)
++.||. +..-.+.+++++|.+.|++|..+.-......+...+. .-...+++|+.-|... .||+...++.++
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~~~--~Gf~~~~l~~~~ 73 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDLSW--SGFRPDMINRLH 73 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCEEE--ecCCHHHHHHHH
Confidence 456777 6778899999999999999988887776655555444 2445789999988754 788776665544
No 171
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=79.03 E-value=8.3 Score=48.51 Aligned_cols=76 Identities=13% Similarity=0.161 Sum_probs=62.5
Q ss_pred CCcEEEEecchhcHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEE
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKS----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI 693 (754)
..+++|.+|+..-+..+.+.|++ .++++..+++.++.+++.+.+..+.+|+..|+|.|=+. ..+.+.++++..||
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l-l~~~v~f~~L~llV 578 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL-LQKDVKFKDLGLLI 578 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH-hhCCCCcccCCEEE
Confidence 36899999999777766665554 47788999999999999999999999999999999643 34667788888887
Q ss_pred E
Q 004428 694 I 694 (754)
Q Consensus 694 f 694 (754)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 5
No 172
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=78.95 E-value=4.6 Score=39.35 Aligned_cols=67 Identities=9% Similarity=0.118 Sum_probs=46.6
Q ss_pred HHHHHHHhCCC---ceEeecCCCCHHHHHHHHHHHhcCCc---cEEEEcccccccCccccCC--CCeEEEccCCC
Q 004428 633 RLRNFLKSQNA---SFCLLGDYTEPSDISRARVWFFEGKR---KMILYTERSHFYHRYKIRG--IQNLIIYSLPE 699 (754)
Q Consensus 633 rlrn~Lk~~~~---~f~~Ihey~sq~~r~rar~~F~~G~~---~ILL~TErahffRr~dIkg--V~~VIfY~lP~ 699 (754)
.+.+++++.++ ..-.+.+-....+....+..|+.... .||+++-+-.|+-|+|++| .+.||..++|-
T Consensus 6 ~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 6 QVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 34455554432 22234444444556778888887654 7999999966779999999 68999999994
No 173
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=76.65 E-value=9.5 Score=42.63 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=26.4
Q ss_pred ccCCceeEEEEecchhhhhcCchHHHHHHHHhcc
Q 004428 478 DYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNR 511 (754)
Q Consensus 478 dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~ 511 (754)
..|..+++|||||+-.+--..++.+..++..+..
T Consensus 98 ~~l~~~~~lIiDEism~~~~~l~~i~~~lr~i~~ 131 (364)
T PF05970_consen 98 ERLRKADVLIIDEISMVSADMLDAIDRRLRDIRK 131 (364)
T ss_pred hhhhhheeeecccccchhHHHHHHHHHhhhhhhc
Confidence 3588999999999988776667777777766544
No 174
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=76.57 E-value=12 Score=47.83 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=69.1
Q ss_pred CCcEEEEecchhcHHHHHHHHHhC---CCceEeecCCCCHHHHHHHHHHHhcC-CccEE-EEcccccccCccccCCCCeE
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQ---NASFCLLGDYTEPSDISRARVWFFEG-KRKMI-LYTERSHFYHRYKIRGIQNL 692 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~---~~~f~~Ihey~sq~~r~rar~~F~~G-~~~IL-L~TErahffRr~dIkgV~~V 692 (754)
..++||||.=+.-.+-|-+-|.+. .+.+.-+.|.-...+|.++-..|.++ .+.|| |+|=|=. =|+.+-|.++|
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGG--LGLNLTGADTV 1417 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGG--LGLNLTGADTV 1417 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccc--cccccCCCceE
Confidence 458999999998888888888765 33445799999999999999999999 67776 5667766 89999999999
Q ss_pred EEccCCCCCC
Q 004428 693 IIYSLPERKE 702 (754)
Q Consensus 693 IfY~lP~~pe 702 (754)
|||+-==||-
T Consensus 1418 VFvEHDWNPM 1427 (1549)
T KOG0392|consen 1418 VFVEHDWNPM 1427 (1549)
T ss_pred EEEecCCCch
Confidence 9998665553
No 175
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.53 E-value=9 Score=44.91 Aligned_cols=76 Identities=11% Similarity=0.119 Sum_probs=62.7
Q ss_pred CCcEEEEecchhcHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEcc
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQ-NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYS 696 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~-~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~ 696 (754)
..++||.+|+..-...+...|++. +...+.+|+.++.++|.++.....+|+.+|+|.|--+.| ..++++..||.=+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf---~p~~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF---LPFKNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc---CcccCCCEEEEEC
Confidence 468999999988777777777653 678899999999999999999999999999999976654 2477888888654
No 176
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=75.25 E-value=6.8 Score=49.26 Aligned_cols=58 Identities=5% Similarity=-0.060 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHhcCCc---------------cEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccC
Q 004428 653 EPSDISRARVWFFEGKR---------------KMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLE 712 (754)
Q Consensus 653 sq~~r~rar~~F~~G~~---------------~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ 712 (754)
+..+..++.....+.+- +++..-.-+. -|.|-+.|=.+.-..--.+.-.=...|||.-
T Consensus 471 ~~~~~~~~y~lILkdKE~LLSf~~~~g~~~~~~fifs~~al~--egwd~~~~~~~~~l~~~~s~~~~~q~~gr~l 543 (986)
T PRK15483 471 SDEAIQAEVNDILHNKEKLLSFKDEDGNWNTRRFLFSKWTLR--EGWDNPNVFQIAKLRSSGSETSKLQEVGRGL 543 (986)
T ss_pred CchhHHHHHHHHHhhHHHhcCcccccCCCCCeEEEEEhHHhh--hcCCCCCeEEEEEeccCCchHHHHHHhccce
Confidence 34555666666554443 4444444444 6888888877777765555555556677754
No 177
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=74.99 E-value=2.2 Score=48.75 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=23.0
Q ss_pred CCCCcch-hhhhhhcCccHHHHHHHHhccCCcchhhHHHHHhhhhcCC
Q 004428 49 EESSGDA-VEEIIYKEPSVYDNLLMKLGSSSESVADAFKIRQRQEEGR 95 (754)
Q Consensus 49 ~~~~~~~-~~~~~~~~~~~y~~ll~~~~~~~~~~~~~~~~r~~~~~~~ 95 (754)
|-+|.+. +++=++ .++.|...|- + +...+.....||+-+|-.
T Consensus 4 EFaSs~~e~ddWi~-~~~~~~~KlT-i---~DtlkKE~~IRkLgeEaE 46 (458)
T PF10446_consen 4 EFASSEPEEDDWIR-QDTDYKRKLT-I---NDTLKKENAIRKLGEEAE 46 (458)
T ss_pred ccccCccchhhhhh-cccccccccc-H---HHHHHHHHHHhhhhHHHH
Confidence 3445444 333333 4466665553 2 334567778888877643
No 178
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=73.82 E-value=7.9 Score=47.14 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=45.5
Q ss_pred CCHHHHHHhhhh----hC-----CccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccc
Q 004428 258 HSSKQRSFFSLC----NS-----YRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAK 328 (754)
Q Consensus 258 pTpiQ~~~ip~i----~~-----y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~ 328 (754)
+=|-|.+.+-.+ .+ .+-+++-|.|| +|||.||++|++-+..+.
T Consensus 26 ~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTG---------tGKTlaYLlPai~~A~~~------------------- 77 (697)
T PRK11747 26 PRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTG---------VGKTLSYLLAGIPIARAE------------------- 77 (697)
T ss_pred cCHHHHHHHHHHHHHHhcccccccceEEEECCCC---------cchhHHHHHHHHHHHHHc-------------------
Confidence 346776644444 22 25577889998 999999999998877543
Q ss_pred cccccccccccCCCCCceEEEEccchhHHHHHHHH
Q 004428 329 EGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKR 363 (754)
Q Consensus 329 ~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~ 363 (754)
.-||+|=+.|..|=.|+++.
T Consensus 78 ---------------~k~vVIST~T~~LQeQL~~k 97 (697)
T PRK11747 78 ---------------KKKLVISTATVALQEQLVSK 97 (697)
T ss_pred ---------------CCeEEEEcCCHHHHHHHHhh
Confidence 12588888888888888643
No 179
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=73.78 E-value=34 Score=43.19 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=55.8
Q ss_pred ecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEc--cCCCCCCchhhhccccCCCC
Q 004428 648 LGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIY--SLPERKEFYPEIVNMLEGSH 715 (754)
Q Consensus 648 Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY--~lP~~pefY~erigrt~ra~ 715 (754)
=|..+....|+-.--.|+.|...||++|+-.+ =|+..+ -++|+|- .|--+|--|..+.||.||-|
T Consensus 968 HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLs--LGiNMP-CrTVvF~gDsLQL~plny~QmaGRAGRRG 1034 (1330)
T KOG0949|consen 968 HHAGLNRKYRSLVEVLFRQGHLQVLFATETLS--LGINMP-CRTVVFAGDSLQLDPLNYKQMAGRAGRRG 1034 (1330)
T ss_pred cccccchHHHHHHHHHhhcCceEEEEEeeehh--cccCCC-ceeEEEeccccccCchhHHhhhccccccc
Confidence 36778888888888999999999999999999 888775 5778886 37778999999999999876
No 180
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=72.33 E-value=9.5 Score=47.33 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=20.9
Q ss_pred CCCcEEEEecchhcHHHHHHHHHh
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKS 640 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~ 640 (754)
..+++||||.+..-+..|++||..
T Consensus 294 ~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 294 GPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred CCCcEEEEEcchHHHHHHHHHHHh
Confidence 457899999999999999999965
No 181
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=69.46 E-value=13 Score=43.51 Aligned_cols=84 Identities=8% Similarity=-0.005 Sum_probs=63.9
Q ss_pred CCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC-CccEEEEcccccccCccccCCCCeEEEcc
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEG-KRKMILYTERSHFYHRYKIRGIQNLIIYS 696 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G-~~~ILL~TErahffRr~dIkgV~~VIfY~ 696 (754)
.-+.|||-.=..-.+-|.-.|.+.|++++.+-|.|+..+|..++..|++. .++|+|.+=-|. -=-+.+--.+||++.|
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAG-GVALNLteASqVFmmD 716 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAG-GVALNLTEASQVFMMD 716 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccC-ceEeeechhceeEeec
Confidence 45678886544334445556899999999999999999999999999987 689988875543 1123566689999999
Q ss_pred CCCCCC
Q 004428 697 LPERKE 702 (754)
Q Consensus 697 lP~~pe 702 (754)
|==||-
T Consensus 717 PWWNpa 722 (791)
T KOG1002|consen 717 PWWNPA 722 (791)
T ss_pred ccccHH
Confidence 876664
No 182
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=67.74 E-value=26 Score=41.16 Aligned_cols=68 Identities=10% Similarity=0.131 Sum_probs=54.3
Q ss_pred EEEEecchhcHHHHHHHHHh----C-CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-----cccccCc-cccCCC
Q 004428 621 IMLFLSSYFEFVRLRNFLKS----Q-NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-----RSHFYHR-YKIRGI 689 (754)
Q Consensus 621 tLIFv~Sy~d~vrlrn~Lk~----~-~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-----rahffRr-~dIkgV 689 (754)
+||.+||..-+..|.+-+.+ . ++.++.+.|.++-....+++.. | .+|||+|- ..+ ++ +++.+|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~--~~~l~l~~v 175 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIK--RGKLDLSGV 175 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHH--cCCcchhhc
Confidence 99999999999888887754 3 6888999998887776655554 7 99999994 444 44 888999
Q ss_pred CeEEE
Q 004428 690 QNLII 694 (754)
Q Consensus 690 ~~VIf 694 (754)
+.+|.
T Consensus 176 ~~lVl 180 (513)
T COG0513 176 ETLVL 180 (513)
T ss_pred CEEEe
Confidence 99884
No 183
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=67.59 E-value=18 Score=43.80 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=48.0
Q ss_pred CCHHHHHHhhhhhCCccEE-EecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDIL-HSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDA 336 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl-~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~ 336 (754)
.++.|+.++..++..++++ ..+..| ||||.. +..++.++++
T Consensus 158 ln~~Q~~Av~~~l~~~~~~lI~GpPG---------TGKT~t-~~~ii~~~~~---------------------------- 199 (637)
T TIGR00376 158 LNESQKEAVSFALSSKDLFLIHGPPG---------TGKTRT-LVELIRQLVK---------------------------- 199 (637)
T ss_pred CCHHHHHHHHHHhcCCCeEEEEcCCC---------CCHHHH-HHHHHHHHHH----------------------------
Confidence 3689999999988875554 444444 889843 3455666543
Q ss_pred cccCCCCCceEEEEccchhHHHHHHHHHHH
Q 004428 337 FLDRGFTRPKVLILLPLKSIALNVVKRLIR 366 (754)
Q Consensus 337 ~RDQGftRPkVLIL~PTRelA~qIv~~l~~ 366 (754)
+| ++||+++||...|.++++.|.+
T Consensus 200 ---~g---~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 200 ---RG---LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred ---cC---CCEEEEcCcHHHHHHHHHHHHh
Confidence 22 4899999999999999999987
No 184
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.63 E-value=23 Score=40.88 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=63.3
Q ss_pred HhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-ccc----ccCc
Q 004428 609 VFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RSH----FYHR 683 (754)
Q Consensus 609 iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-rah----ffRr 683 (754)
+||.+.. .+.+||.+|+..-.......|+..+++++.+++..+..++...+.....|+.+|+++|- ++. |...
T Consensus 44 ~lp~l~~--~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~ 121 (470)
T TIGR00614 44 QLPALCS--DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQT 121 (470)
T ss_pred HHHHHHc--CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHH
Confidence 4565542 46799999998776667777888999999999999999999888899999999998883 322 2233
Q ss_pred c-ccCCCCeEEE
Q 004428 684 Y-KIRGIQNLII 694 (754)
Q Consensus 684 ~-dIkgV~~VIf 694 (754)
+ ...++..||.
T Consensus 122 l~~~~~i~~iVi 133 (470)
T TIGR00614 122 LEERKGITLIAV 133 (470)
T ss_pred HHhcCCcCEEEE
Confidence 3 4455666554
No 185
>PRK10689 transcription-repair coupling factor; Provisional
Probab=65.40 E-value=17 Score=46.77 Aligned_cols=75 Identities=11% Similarity=0.145 Sum_probs=59.9
Q ss_pred CCcEEEEecchhcHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEE
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKS----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI 693 (754)
..++||-||+..-+..+.+.|++ .++.+..+++..+.+++...+....+|.++|+|.|=.. ..+.+.++.+..||
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~l-L~~~v~~~~L~lLV 727 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKL-LQSDVKWKDLGLLI 727 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHH-HhCCCCHhhCCEEE
Confidence 46899999999887777666654 36788889999999999999999999999999999432 22556667777776
No 186
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=63.90 E-value=35 Score=33.87 Aligned_cols=74 Identities=8% Similarity=0.082 Sum_probs=49.7
Q ss_pred CCCcEEEEecchhcHHHHHHHH----HhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccc--cc-ccC-ccccCC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFL----KSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTER--SH-FYH-RYKIRG 688 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~L----k~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEr--ah-ffR-r~dIkg 688 (754)
...++||.+|+..-.....+.+ ...++....+++..+..+..... .+...|+|+|=. .. +.+ .+.+++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL----KRGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCCChhh
Confidence 3457999999987776655544 34578889999988876655443 377899999921 00 112 245677
Q ss_pred CCeEEE
Q 004428 689 IQNLII 694 (754)
Q Consensus 689 V~~VIf 694 (754)
+..||+
T Consensus 144 l~~lIv 149 (203)
T cd00268 144 VKYLVL 149 (203)
T ss_pred CCEEEE
Confidence 888775
No 187
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=62.76 E-value=7.1 Score=38.82 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=19.2
Q ss_pred CceEEEEccchhHHHHHHHHHHHh
Q 004428 344 RPKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 344 RPkVLIL~PTRelA~qIv~~l~~L 367 (754)
+-|||||.|||=+|..+.+.|..+
T Consensus 33 ~~rvLvL~PTRvva~em~~aL~~~ 56 (148)
T PF07652_consen 33 RLRVLVLAPTRVVAEEMYEALKGL 56 (148)
T ss_dssp T--EEEEESSHHHHHHHHHHTTTS
T ss_pred cCeEEEecccHHHHHHHHHHHhcC
Confidence 457999999999999999888654
No 188
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=62.72 E-value=22 Score=43.75 Aligned_cols=81 Identities=11% Similarity=0.075 Sum_probs=56.5
Q ss_pred HhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC---CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc-cccccc--C
Q 004428 609 VFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ---NASFCLLGDYTEPSDISRARVWFFEGKRKMILYT-ERSHFY--H 682 (754)
Q Consensus 609 iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~---~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T-Erahff--R 682 (754)
+|..+......++||.+|++.=+..+.+.|++. ++.+..++|++++.++.+. +. ..+|+|+| |+.|.. +
T Consensus 72 iL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i----~~-~~~IivtTPd~L~~~~L~ 146 (742)
T TIGR03817 72 VLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA----RE-HARYVLTNPDMLHRGILP 146 (742)
T ss_pred HHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH----hc-CCCEEEEChHHHHHhhcc
Confidence 344444444568999999998877777777653 6788999999998876433 23 37899999 777621 0
Q ss_pred -----ccccCCCCeEEE
Q 004428 683 -----RYKIRGIQNLII 694 (754)
Q Consensus 683 -----r~dIkgV~~VIf 694 (754)
+-.+++++.||.
T Consensus 147 ~~~~~~~~l~~l~~vVi 163 (742)
T TIGR03817 147 SHARWARFLRRLRYVVI 163 (742)
T ss_pred chhHHHHHHhcCCEEEE
Confidence 112678888886
No 189
>PF13245 AAA_19: Part of AAA domain
Probab=62.21 E-value=33 Score=29.91 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.9
Q ss_pred CceEEEEccchhHHHHHHHHH
Q 004428 344 RPKVLILLPLKSIALNVVKRL 364 (754)
Q Consensus 344 RPkVLIL~PTRelA~qIv~~l 364 (754)
..+||+++|||.+|..+.+.+
T Consensus 42 ~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 42 GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCHHHHHHHHHHH
Confidence 357999999999999999888
No 190
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=61.94 E-value=8.9 Score=48.94 Aligned_cols=83 Identities=24% Similarity=0.387 Sum_probs=57.1
Q ss_pred CCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCce
Q 004428 342 FTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQ 421 (754)
Q Consensus 342 ftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~ 421 (754)
|.|.-.||+|| +-|+-.+..++.+++|..+ | -.|-|++.
T Consensus 1029 ~~~~PSLIVCP-sTLtGHW~~E~~kf~pfL~---v-------~~yvg~p~------------------------------ 1067 (1549)
T KOG0392|consen 1029 FNRLPSLIVCP-STLTGHWKSEVKKFFPFLK---V-------LQYVGPPA------------------------------ 1067 (1549)
T ss_pred hccCCeEEECC-chhhhHHHHHHHHhcchhh---h-------hhhcCChH------------------------------
Confidence 44555899999 5799999999999998743 2 24544421
Q ss_pred eeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCce--eEEEEecchhhh
Q 004428 422 ILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSI--EVLIIDHADIIL 495 (754)
Q Consensus 422 ~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSI--EiLVlDeAD~mL 495 (754)
.| .++-.++.+++|||+|= +.+. .|+|+|-.+ .++||||-|+|-
T Consensus 1068 -----------------~r--~~lR~q~~~~~iiVtSY----Dv~R-------nD~d~l~~~~wNYcVLDEGHVik 1113 (1549)
T KOG0392|consen 1068 -----------------ER--RELRDQYKNANIIVTSY----DVVR-------NDVDYLIKIDWNYCVLDEGHVIK 1113 (1549)
T ss_pred -----------------HH--HHHHhhccccceEEeeH----HHHH-------HHHHHHHhcccceEEecCcceec
Confidence 11 23335566899999994 4443 256666544 489999999986
No 191
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=60.42 E-value=34 Score=40.59 Aligned_cols=84 Identities=12% Similarity=0.112 Sum_probs=61.8
Q ss_pred HhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc-ccc---cccCcc
Q 004428 609 VFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT-ERS---HFYHRY 684 (754)
Q Consensus 609 iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T-Era---hffRr~ 684 (754)
.+|.+.. .+.+||.+|...=.......|+..++.+..+|+..+..+..+.......|..+||+.| |++ .|.+.+
T Consensus 46 ~lpal~~--~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l 123 (591)
T TIGR01389 46 QVPALLL--KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNML 123 (591)
T ss_pred HHHHHHc--CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHH
Confidence 3555542 4568999998766555566778889999999999999999999999999999999765 433 222344
Q ss_pred ccCCCCeEEE
Q 004428 685 KIRGIQNLII 694 (754)
Q Consensus 685 dIkgV~~VIf 694 (754)
....+..||.
T Consensus 124 ~~~~l~~iVi 133 (591)
T TIGR01389 124 QRIPIALVAV 133 (591)
T ss_pred hcCCCCEEEE
Confidence 4556666664
No 192
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=60.39 E-value=32 Score=41.15 Aligned_cols=65 Identities=9% Similarity=0.017 Sum_probs=54.1
Q ss_pred HhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc
Q 004428 609 VFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT 675 (754)
Q Consensus 609 iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T 675 (754)
+||.+.. .+.+||.+|+..-.......|+..++.+..+++..+..+..........|+.++|++|
T Consensus 58 ~lpal~~--~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~t 122 (607)
T PRK11057 58 QIPALVL--DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIA 122 (607)
T ss_pred HHHHHHc--CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEC
Confidence 4566543 4679999998877777778888899999999999999888888888899999999777
No 193
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=60.24 E-value=1.5e+02 Score=37.65 Aligned_cols=40 Identities=10% Similarity=-0.126 Sum_probs=26.3
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
|-++|--.-=++..|+ ++.-+|| .|||.+.+||+.=+.+.
T Consensus 86 ~ydVQliGgl~Lh~G~--IAEM~TG---------EGKTL~atlpaylnAL~ 125 (939)
T PRK12902 86 HFDVQLIGGMVLHEGQ--IAEMKTG---------EGKTLVATLPSYLNALT 125 (939)
T ss_pred cchhHHHhhhhhcCCc--eeeecCC---------CChhHHHHHHHHHHhhc
Confidence 5567765544444443 4666777 88998888888765543
No 194
>PRK14873 primosome assembly protein PriA; Provisional
Probab=59.54 E-value=52 Score=40.16 Aligned_cols=76 Identities=16% Similarity=0.281 Sum_probs=65.9
Q ss_pred CCcEEEEecchhcHHHHHHHHHhC-C-CceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEc
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQ-N-ASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIY 695 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~-~-~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY 695 (754)
..++||-||......++...|+.. + ..++.+|..++.++|-++.....+|+.+|+|=|=-|.|- -+++...||--
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvFa---P~~~LgLIIvd 264 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVFA---PVEDLGLVAIW 264 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEEe---ccCCCCEEEEE
Confidence 467999999999999999999864 4 678999999999999999999999999999999877765 67788777754
Q ss_pred c
Q 004428 696 S 696 (754)
Q Consensus 696 ~ 696 (754)
+
T Consensus 265 E 265 (665)
T PRK14873 265 D 265 (665)
T ss_pred c
Confidence 3
No 195
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=59.12 E-value=25 Score=42.75 Aligned_cols=47 Identities=9% Similarity=0.162 Sum_probs=35.3
Q ss_pred CCcEEEEecchhcHHHHHHHHHhCCCceEeecCC--CCHHHHHHHHHHH
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDY--TEPSDISRARVWF 664 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey--~sq~~r~rar~~F 664 (754)
.+-+-|-+++......|...|.+.||++....+. ....++.-.+..+
T Consensus 342 ~~diAVL~Rs~~~~~~le~~L~~~gIP~~~~~~~~f~~~~ei~~ll~~L 390 (672)
T PRK10919 342 YKDYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYL 390 (672)
T ss_pred cCcEEEEEeCchhHHHHHHHHHHcCCCEEEeCCcchhcCHHHHHHHHHH
Confidence 4567888999999999999999999999877653 3444444444443
No 196
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=58.97 E-value=17 Score=29.34 Aligned_cols=54 Identities=7% Similarity=0.014 Sum_probs=40.7
Q ss_pred EecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 004428 624 FLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTER 677 (754)
Q Consensus 624 Fv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEr 677 (754)
+.+..-.+.+++..|...++.+..+.-......+...+..+..+.+++|+.-+.
T Consensus 6 ~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~ 59 (74)
T TIGR02196 6 TTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHK 59 (74)
T ss_pred cCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCE
Confidence 335567788899999999999988877666666666667777778898886544
No 197
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=58.57 E-value=31 Score=39.32 Aligned_cols=102 Identities=21% Similarity=0.322 Sum_probs=61.1
Q ss_pred CcccccccccHHHHhhhcccCCCCEEEe-CchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHH
Q 004428 430 DNFSIGIKFTRKSIKLYNDFYTSDMIVA-SPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQ 508 (754)
Q Consensus 430 D~FriGik~trk~lkLys~Fy~sDIIVA-SPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~ 508 (754)
|+||+|-. -+++.|..--+..+.++ +|-.|...+. -+...+++|||.|.++. .|..++..+.+.
T Consensus 215 Dt~R~aa~---eQL~~~a~~lgvpv~~~~~~~~l~~~L~-----------~~~~~DlVLIDTaGr~~-~~~~~l~el~~~ 279 (388)
T PRK12723 215 DNYRIGAK---KQIQTYGDIMGIPVKAIESFKDLKEEIT-----------QSKDFDLVLVDTIGKSP-KDFMKLAEMKEL 279 (388)
T ss_pred cCccHHHH---HHHHHHhhcCCcceEeeCcHHHHHHHHH-----------HhCCCCEEEEcCCCCCc-cCHHHHHHHHHH
Confidence 68887764 34777776556665544 5555555554 24678999999999885 233334444444
Q ss_pred hccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHH-HHHHHHHhhc-CCCceEE
Q 004428 509 LNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE-INAFFNHHCA-NYQGKVK 566 (754)
Q Consensus 509 Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pe-insL~~~~~~-N~~G~Vk 566 (754)
+...... ..=-|++|||..+. +..++++|-. ++.|.|-
T Consensus 280 l~~~~~~--------------------~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~ 319 (388)
T PRK12723 280 LNACGRD--------------------AEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIF 319 (388)
T ss_pred HHhcCCC--------------------CeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 3321110 12247889999854 7788887732 3445443
No 198
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=57.69 E-value=24 Score=42.96 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=51.5
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
.+|-|++++... ...+++.|-=| ||||.+ ++|-+.|++..
T Consensus 5 Ln~~Q~~av~~~--~g~~lV~AgaG---------SGKT~~-L~~Ria~Li~~---------------------------- 44 (715)
T TIGR01075 5 LNDKQREAVAAP--PGNLLVLAGAG---------SGKTRV-LTHRIAWLLSV---------------------------- 44 (715)
T ss_pred cCHHHHHHHcCC--CCCEEEEecCC---------CCHHHH-HHHHHHHHHHc----------------------------
Confidence 478999988654 34566666444 888876 56667777643
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCc
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPD 370 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~ 370 (754)
.|...-++|+|+.||.+|..+.+.+.++.+.
T Consensus 45 --~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~ 75 (715)
T TIGR01075 45 --ENASPHSIMAVTFTNKAAAEMRHRIGALLGT 75 (715)
T ss_pred --CCCCHHHeEeeeccHHHHHHHHHHHHHHhcc
Confidence 1233457999999999999999999988653
No 199
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=57.03 E-value=35 Score=34.72 Aligned_cols=61 Identities=16% Similarity=0.222 Sum_probs=38.1
Q ss_pred CHHHHHHhhhhhCCcc-EEE-ecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccc
Q 004428 259 SSKQRSFFSLCNSYRD-ILH-SNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDA 336 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~D-vl~-~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~ 336 (754)
|+-|++++-.++...| +.+ +..-| +|||. +|-.+...+..
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aG---------tGKT~--~l~~~~~~~~~--------------------------- 44 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAG---------TGKTT--LLKALAEALEA--------------------------- 44 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTT---------STHHH--HHHHHHHHHHH---------------------------
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCC---------CCHHH--HHHHHHHHHHh---------------------------
Confidence 6789999998865444 333 23333 88885 34434433322
Q ss_pred cccCCCCCceEEEEccchhHHHHHHHH
Q 004428 337 FLDRGFTRPKVLILLPLKSIALNVVKR 363 (754)
Q Consensus 337 ~RDQGftRPkVLIL~PTRelA~qIv~~ 363 (754)
+| .+|++++||...|..+.+.
T Consensus 45 ---~g---~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 45 ---AG---KRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp ---TT-----EEEEESSHHHHHHHHHH
T ss_pred ---CC---CeEEEECCcHHHHHHHHHh
Confidence 22 4799999999999887766
No 200
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.87 E-value=33 Score=41.79 Aligned_cols=68 Identities=13% Similarity=0.025 Sum_probs=53.5
Q ss_pred CHHHHHH----hhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccc
Q 004428 259 SSKQRSF----FSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIG 334 (754)
Q Consensus 259 TpiQ~~~----ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~ 334 (754)
=|.|.++ +..+-.+..++..++|| +|||.+-+.++|..+....
T Consensus 12 y~~Q~~~m~~v~~~l~~~~~~llEsPTG---------tGKTlslL~~aL~~~~~~~------------------------ 58 (705)
T TIGR00604 12 YPEQRSYMRDLKRSLDRGDEAILEMPSG---------TGKTISLLSLILAYQQEKP------------------------ 58 (705)
T ss_pred CHHHHHHHHHHHHHhccCCceEEeCCCC---------CCccHHHHHHHHHHHHhcc------------------------
Confidence 3567554 45556888999999998 9999999999998765321
Q ss_pred cccccCCCCCceEEEEccchhHHHHHHHHHHHh
Q 004428 335 DAFLDRGFTRPKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 335 ~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L 367 (754)
..+|+.+++.|..--.|++++|.++
T Consensus 59 --------~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 59 --------EVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred --------ccccEEEEcccchHHHHHHHHHHhh
Confidence 1368889999998888888888885
No 201
>PRK14701 reverse gyrase; Provisional
Probab=53.63 E-value=37 Score=45.46 Aligned_cols=60 Identities=7% Similarity=0.039 Sum_probs=50.7
Q ss_pred CCcEEEEecchhcHHHHHHHHHh------CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKS------QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTER 677 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~------~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEr 677 (754)
..++||.+|+..=...+.+.|+. .++.++.+|+.++..+...++..+++|..+|||+|=-
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 35899999999887777777765 2567788999999999999999999999999999943
No 202
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=52.87 E-value=42 Score=38.35 Aligned_cols=75 Identities=8% Similarity=-0.005 Sum_probs=52.8
Q ss_pred CCcEEEEecchhcHHHHHHHHHh-----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc-cccc-c--cCccccCC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKS-----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT-ERSH-F--YHRYKIRG 688 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~-----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T-Erah-f--fRr~dIkg 688 (754)
..++||.||+..=+..+.+.++. .++.+..++|..+.....+.+. +..+|+|+| +|+. + -+++++.+
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~ 147 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDA 147 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHH
Confidence 34799999999888777766653 2688889999888766544433 568999999 2321 1 13567888
Q ss_pred CCeEEEcc
Q 004428 689 IQNLIIYS 696 (754)
Q Consensus 689 V~~VIfY~ 696 (754)
++.||+=.
T Consensus 148 l~~lViDE 155 (460)
T PRK11776 148 LNTLVLDE 155 (460)
T ss_pred CCEEEEEC
Confidence 88888543
No 203
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=52.87 E-value=52 Score=37.24 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=50.1
Q ss_pred CCcEEEEecchhcHHHHH----HHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-cccc---cCccccCCC
Q 004428 618 QGGIMLFLSSYFEFVRLR----NFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RSHF---YHRYKIRGI 689 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlr----n~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-rahf---fRr~dIkgV 689 (754)
..++||.+|+..-+..+. .+.+..++++..++|..........+ .+..+|||+|- |+.- -+.++.++|
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v 148 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAV 148 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccC
Confidence 468999999997655544 44455689999999988876654332 46778999994 2211 145567777
Q ss_pred CeEEE
Q 004428 690 QNLII 694 (754)
Q Consensus 690 ~~VIf 694 (754)
..||+
T Consensus 149 ~~lVi 153 (434)
T PRK11192 149 ETLIL 153 (434)
T ss_pred CEEEE
Confidence 77775
No 204
>PRK11054 helD DNA helicase IV; Provisional
Probab=52.82 E-value=73 Score=39.01 Aligned_cols=85 Identities=11% Similarity=0.082 Sum_probs=52.2
Q ss_pred HHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhh
Q 004428 242 YKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVA 321 (754)
Q Consensus 242 ~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~ 321 (754)
+..|...+....... .||-|+.++-... ..++..|--| +|||.. +++.+.+++..
T Consensus 182 l~~~~~~f~~~e~~~-L~~~Q~~av~~~~--~~~lV~agaG---------SGKT~v-l~~r~ayLl~~------------ 236 (684)
T PRK11054 182 LEEYADFFSQVESSP-LNPSQARAVVNGE--DSLLVLAGAG---------SGKTSV-LVARAGWLLAR------------ 236 (684)
T ss_pred HHHHHHHHHhccCCC-CCHHHHHHHhCCC--CCeEEEEeCC---------CCHHHH-HHHHHHHHHHh------------
Confidence 334444432222223 4899988875432 3456655444 778754 44555566533
Q ss_pred hhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCC
Q 004428 322 KNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTP 369 (754)
Q Consensus 322 ~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~ 369 (754)
.+...-++|+|+.||.+|..+.+.|....+
T Consensus 237 ------------------~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 237 ------------------GQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred ------------------CCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 111234799999999999999999887654
No 205
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=52.57 E-value=41 Score=40.45 Aligned_cols=70 Identities=9% Similarity=0.042 Sum_probs=49.7
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
.+|-|++++-. ....+++.|.-| +|||..-+- -+.|++..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~G---------SGKT~~L~~-ri~~ll~~---------------------------- 41 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAG---------SGKTRVITN-KIAYLIQN---------------------------- 41 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCC---------CCHHHHHHH-HHHHHHHh----------------------------
Confidence 36889888754 345788877655 888866544 44455432
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTP 369 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~ 369 (754)
.|....++|+|+.||.+|.++-+.+.++.+
T Consensus 42 --~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 42 --CGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred --cCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 233456899999999999999999988754
No 206
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=50.12 E-value=55 Score=37.34 Aligned_cols=80 Identities=16% Similarity=0.242 Sum_probs=46.0
Q ss_pred CCCCEEEeCchh-------HHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchh
Q 004428 450 YTSDMIVASPIN-------LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVM 522 (754)
Q Consensus 450 y~sDIIVASPlg-------Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~Dfs 522 (754)
.++|+.+-+|-+ +|.+++... ..-..+.-.|+|||+||+|-.+-. ..+++.|...|.
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~-----~~p~~~~~kViiIDead~m~~~aa---naLLk~LEep~~-------- 146 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAA-----RRPSTGRWRIVVIEDADRLTERAA---NALLKAVEEPPP-------- 146 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHH-----hCcccCCcEEEEEechhhcCHHHH---HHHHHHhhcCCC--------
Confidence 457776655532 355554210 111245668999999999964322 345555555554
Q ss_pred hhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhc
Q 004428 523 RIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCA 559 (754)
Q Consensus 523 RvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~ 559 (754)
+-.+++.++.+..+..-+..-|.
T Consensus 147 --------------~~~fIL~a~~~~~llpTIrSRc~ 169 (394)
T PRK07940 147 --------------RTVWLLCAPSPEDVLPTIRSRCR 169 (394)
T ss_pred --------------CCeEEEEECChHHChHHHHhhCe
Confidence 34566677776666655555565
No 207
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=49.40 E-value=64 Score=39.07 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=50.7
Q ss_pred CCcEEEEecchhcHHHHHHHHHh-----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-cc--cccCc-cccCC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKS-----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RS--HFYHR-YKIRG 688 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~-----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-ra--hffRr-~dIkg 688 (754)
..++||.||+..=+..+...|++ .++.++.+++..+.....+++ .+..+|+|+|- ++ |+.|+ +++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchhh
Confidence 45899999999887777666543 278899999988766555543 34589999993 11 12233 56778
Q ss_pred CCeEEE
Q 004428 689 IQNLII 694 (754)
Q Consensus 689 V~~VIf 694 (754)
|+.||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 887774
No 208
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=48.44 E-value=93 Score=25.79 Aligned_cols=57 Identities=9% Similarity=0.033 Sum_probs=39.1
Q ss_pred EEEEe-cchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC-CccEEEEccc
Q 004428 621 IMLFL-SSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEG-KRKMILYTER 677 (754)
Q Consensus 621 tLIFv-~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G-~~~ILL~TEr 677 (754)
+.||. +..-.+.+++.+|++.++.|..+.-......+...+...-.. .++.++.-+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCE
Confidence 34555 677889999999999999998887776654444433333322 5787776655
No 209
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=47.41 E-value=47 Score=39.95 Aligned_cols=64 Identities=20% Similarity=0.218 Sum_probs=47.0
Q ss_pred CHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccc
Q 004428 259 SSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFL 338 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~R 338 (754)
-+-|++++...++-+|++..--- .+||||.....=|.+-|. .
T Consensus 187 n~SQk~Av~~~~~~k~l~~I~GP--------PGTGKT~TlvEiI~qlvk-~----------------------------- 228 (649)
T KOG1803|consen 187 NSSQKAAVSFAINNKDLLIIHGP--------PGTGKTRTLVEIISQLVK-Q----------------------------- 228 (649)
T ss_pred cHHHHHHHHHHhccCCceEeeCC--------CCCCceeeHHHHHHHHHH-c-----------------------------
Confidence 46899999999999877664321 238888776665544442 2
Q ss_pred cCCCCCceEEEEccchhHHHHHHHHHH
Q 004428 339 DRGFTRPKVLILLPLKSIALNVVKRLI 365 (754)
Q Consensus 339 DQGftRPkVLIL~PTRelA~qIv~~l~ 365 (754)
| -||||++||+....-|++.+.
T Consensus 229 --~---k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 229 --K---KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred --C---CeEEEEcCchHHHHHHHHHhc
Confidence 1 379999999999999999755
No 210
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=46.86 E-value=18 Score=36.78 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=25.1
Q ss_pred CCCcEEEEecchhc--HHHHHHHHHhCCCceEeec
Q 004428 617 IQGGIMLFLSSYFE--FVRLRNFLKSQNASFCLLG 649 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d--~vrlrn~Lk~~~~~f~~Ih 649 (754)
...+||||+|.|.+ ++++...|..++++|+.|+
T Consensus 81 ~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 81 ETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE
Confidence 46899999999865 8899999999999999999
No 211
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=46.53 E-value=1.3e+02 Score=28.47 Aligned_cols=83 Identities=11% Similarity=0.200 Sum_probs=50.3
Q ss_pred HhHHhhhcCCCcEEEEecchhcHHHHHHHHH----hCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccc-c-cc-
Q 004428 609 VFPKIKDSIQGGIMLFLSSYFEFVRLRNFLK----SQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERS-H-FY- 681 (754)
Q Consensus 609 iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk----~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEra-h-ff- 681 (754)
++..+.......+||.+|+..-...+...+. ..+++...+++..+....... +..++..|+|+|=.. . ++
T Consensus 35 ~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ilv~T~~~l~~~~~ 111 (169)
T PF00270_consen 35 ALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQRE---VLSNQADILVTTPEQLLDLIS 111 (169)
T ss_dssp HHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHH---HHHTTSSEEEEEHHHHHHHHH
T ss_pred HHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccc---cccccccccccCcchhhcccc
Confidence 4444444344699999999866665555554 456788999887774422221 127889999998432 1 00
Q ss_pred -CccccCCCCeEEE
Q 004428 682 -HRYKIRGIQNLII 694 (754)
Q Consensus 682 -Rr~dIkgV~~VIf 694 (754)
+...+..+..||+
T Consensus 112 ~~~~~~~~~~~iVi 125 (169)
T PF00270_consen 112 NGKINISRLSLIVI 125 (169)
T ss_dssp TTSSTGTTESEEEE
T ss_pred ccccccccceeecc
Confidence 1224556766664
No 212
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=45.61 E-value=15 Score=45.34 Aligned_cols=10 Identities=40% Similarity=0.298 Sum_probs=4.5
Q ss_pred HHHHHhccCC
Q 004428 69 NLLMKLGSSS 78 (754)
Q Consensus 69 ~ll~~~~~~~ 78 (754)
-||..|...+
T Consensus 593 iLLslls~~s 602 (784)
T PF04931_consen 593 ILLSLLSQPS 602 (784)
T ss_pred HHHHHHhCcc
Confidence 4455554433
No 213
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=45.49 E-value=53 Score=42.80 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=51.1
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
.|+-|+++|- ..+.++++.|.-| +|||.+-+-.++.+|...
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AG---------sGKT~~lv~r~~~~~~~~---------------------------- 42 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAG---------SGKTAVLVERIIKKILRG---------------------------- 42 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCC---------CcHHHHHHHHHHHHHhcC----------------------------
Confidence 3889999987 4688999988765 999999999999988632
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHH
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIR 366 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~ 366 (754)
..--++|||+=|+.+|..+-+.|.+
T Consensus 43 ----~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 43 ----VDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred ----CCHhhEEEEeccHHHHHHHHHHHHH
Confidence 1112589999999999776665554
No 214
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=45.20 E-value=56 Score=39.64 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.9
Q ss_pred eEEEEccchhHHHHHHHHHHHhCCc
Q 004428 346 KVLILLPLKSIALNVVKRLIRLTPD 370 (754)
Q Consensus 346 kVLIL~PTRelA~qIv~~l~~L~~~ 370 (754)
.+|||+|+...|.|+++.|..+.+.
T Consensus 59 ~vLIVt~~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 59 PTLVLAHNKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred CEEEEECCHHHHHHHHHHHHHhcCC
Confidence 3899999999999999999999764
No 215
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=44.08 E-value=98 Score=35.94 Aligned_cols=28 Identities=7% Similarity=0.026 Sum_probs=24.2
Q ss_pred CCceEEEEccchhHHHHHHHHHHHhCCc
Q 004428 343 TRPKVLILLPLKSIALNVVKRLIRLTPD 370 (754)
Q Consensus 343 tRPkVLIL~PTRelA~qIv~~l~~L~~~ 370 (754)
..+.|++.+++|+-|..+.+.+.++...
T Consensus 53 ~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 53 PGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred cCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 3588999999999999999999887543
No 216
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=43.88 E-value=1e+02 Score=25.80 Aligned_cols=58 Identities=10% Similarity=0.139 Sum_probs=40.4
Q ss_pred cEEEEe-cchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 004428 620 GIMLFL-SSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTER 677 (754)
Q Consensus 620 ~tLIFv-~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEr 677 (754)
++.||. ++.-.+.+++.+|.+.+++|..+.=......+..-...--.+.+++++.-+.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~ 60 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEK 60 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence 344554 5578899999999999999998866655544444333334456788877776
No 217
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=43.39 E-value=77 Score=39.91 Aligned_cols=69 Identities=9% Similarity=-0.102 Sum_probs=48.2
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
.|.. |-++|--.-=++..|+ ++.=+|| .|||.+-+||+.=+.+..
T Consensus 75 lG~r--~ydVQliGglvLh~G~--IAEMkTG---------EGKTLvAtLpayLnAL~G---------------------- 119 (925)
T PRK12903 75 LGKR--PYDVQIIGGIILDLGS--VAEMKTG---------EGKTITSIAPVYLNALTG---------------------- 119 (925)
T ss_pred hCCC--cCchHHHHHHHHhcCC--eeeecCC---------CCccHHHHHHHHHHHhcC----------------------
Confidence 3553 5678876665666664 5777787 899999999996544422
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLT 368 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~ 368 (754)
-.|=|++.--=||.+=.+.+..+.
T Consensus 120 -------------kgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 120 -------------KGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred -------------CceEEEecchhhhhhhHHHHHHHH
Confidence 236777888888888777776653
No 218
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=42.30 E-value=93 Score=40.50 Aligned_cols=60 Identities=5% Similarity=0.030 Sum_probs=48.0
Q ss_pred CCcEEEEecchhcHHHHHHHHH----hCCCceE---eecCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLK----SQNASFC---LLGDYTEPSDISRARVWFFEGKRKMILYTER 677 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk----~~~~~f~---~Ihey~sq~~r~rar~~F~~G~~~ILL~TEr 677 (754)
..++||.+|+..=+..+.+.|+ ..++... .+||.++.+++...+..+.+|...|||+|=-
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 5789999999987776666554 3455543 5799999999999999999999999999953
No 219
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=42.03 E-value=80 Score=39.22 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=51.0
Q ss_pred CCCEEEeCchhHHHHHhhhhcccccCcccCCc--eeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhh
Q 004428 451 TSDMIVASPINLHQKMTKAEENKEQDVDYLSS--IEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWY 528 (754)
Q Consensus 451 ~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSS--IEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~ 528 (754)
...|+|.|=-+++. .+ |-|+. =+++||||+|+|=--|-.--..+ .+++.
T Consensus 315 ~~~ilitty~~~r~-~~----------d~l~~~~W~y~ILDEGH~IrNpns~islac----kki~T-------------- 365 (923)
T KOG0387|consen 315 DGGILITTYDGFRI-QG----------DDLLGILWDYVILDEGHRIRNPNSKISLAC----KKIRT-------------- 365 (923)
T ss_pred cCcEEEEehhhhcc-cC----------cccccccccEEEecCcccccCCccHHHHHH----Hhccc--------------
Confidence 45677777666653 22 12443 46999999999986665433332 23343
Q ss_pred cccCCCccccEEEEcCCCCH-HHHHHHHHhhcCCCceEEE
Q 004428 529 LDGYSRFYRQTVLLSYHPNP-EINAFFNHHCANYQGKVKL 567 (754)
Q Consensus 529 L~~~ak~~RQTllFSAt~~p-einsL~~~~~~N~~G~Vkv 567 (754)
++-|++|.|.-. .+..|++-+-.+.||++-.
T Consensus 366 --------~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt 397 (923)
T KOG0387|consen 366 --------VHRIILSGTPIQNNLTELWSLFDFVFPGKLGT 397 (923)
T ss_pred --------cceEEeeCccccchHHHHHHHhhhccCCcccc
Confidence 577889888653 4777777666677777643
No 220
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=41.49 E-value=67 Score=39.32 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=36.3
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCC--CCHHHHHHHHHHHh
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDY--TEPSDISRARVWFF 665 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey--~sq~~r~rar~~F~ 665 (754)
..+-+.|.+++......|...|...||++....+. ....++.-.+..++
T Consensus 346 ~~~diAVL~R~~~~~~~le~~L~~~gIPy~~~g~~~f~~~~eikd~la~Lr 396 (721)
T PRK11773 346 ALSDCAILYRSNAQSRVLEEALLQAGIPYRIYGGMRFFERQEIKDALAYLR 396 (721)
T ss_pred CcccEEEEEecchhHHHHHHHHHHCCCCEEEECCCCccccHHHHHHHHHHH
Confidence 35678999999999999999999999999877542 23445544444443
No 221
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=41.17 E-value=75 Score=40.55 Aligned_cols=65 Identities=8% Similarity=-0.007 Sum_probs=51.9
Q ss_pred hhcCCCcEEEEecchhcHHHHHHHHHh----CC-C--ceEeecCCCCHHHHHHHHHHHhcCCccEEEEccccc
Q 004428 614 KDSIQGGIMLFLSSYFEFVRLRNFLKS----QN-A--SFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSH 679 (754)
Q Consensus 614 ~~~~~~~tLIFv~Sy~d~vrlrn~Lk~----~~-~--~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErah 679 (754)
......+++|-+||..=...+.+.|++ .+ . ..+ .|+-++.+++..++.+|.+|...|||+|-.+.
T Consensus 121 ~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 121 LAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred HHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 333458999999999777666666654 33 3 334 89999999999999999999999999998765
No 222
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.14 E-value=79 Score=38.78 Aligned_cols=55 Identities=15% Similarity=0.269 Sum_probs=35.7
Q ss_pred CceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcC
Q 004428 481 SSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCAN 560 (754)
Q Consensus 481 SSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N 560 (754)
..-.|+||||+|.|-. .-...+++.|...|. +-.++|..|.+..|-.-+..-|.-
T Consensus 123 gr~KViIIDEah~Ls~---~AaNALLKTLEEPP~----------------------~v~FILaTtep~kLlpTIrSRCq~ 177 (700)
T PRK12323 123 GRFKVYMIDEVHMLTN---HAFNAMLKTLEEPPE----------------------HVKFILATTDPQKIPVTVLSRCLQ 177 (700)
T ss_pred CCceEEEEEChHhcCH---HHHHHHHHhhccCCC----------------------CceEEEEeCChHhhhhHHHHHHHh
Confidence 3568999999998853 234456677766665 345666666666665555555654
No 223
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=40.94 E-value=64 Score=40.98 Aligned_cols=133 Identities=14% Similarity=0.187 Sum_probs=83.6
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|...|++++-+.-...-++..|+|- .|||.+ +--++..+++.-|
T Consensus 512 Pd~WQ~elLDsvDr~eSavIVAPTS---------aGKTfi-sfY~iEKVLResD-------------------------- 555 (1330)
T KOG0949|consen 512 PDEWQRELLDSVDRNESAVIVAPTS---------AGKTFI-SFYAIEKVLRESD-------------------------- 555 (1330)
T ss_pred CcHHHHHHhhhhhcccceEEEeecc---------CCceec-cHHHHHHHHhhcC--------------------------
Confidence 5678999999998888889999985 566643 2223456664421
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
-| -|+.++||+.|.-|+.-.+..-..... . .|-...+|.
T Consensus 556 --~~----VVIyvaPtKaLVnQvsa~VyaRF~~~t----~--~rg~sl~g~----------------------------- 594 (1330)
T KOG0949|consen 556 --SD----VVIYVAPTKALVNQVSANVYARFDTKT----F--LRGVSLLGD----------------------------- 594 (1330)
T ss_pred --CC----EEEEecchHHHhhhhhHHHHHhhccCc----c--ccchhhHhh-----------------------------
Confidence 12 378899999999999876654321100 0 111112221
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcc-cCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhh
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYND-FYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL 495 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~-Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL 495 (754)
++ +-|+. --+|.|+|.-|=-|--++-.. ....-|.+.|.++|.||.+.+=
T Consensus 595 --------------------lt----qEYsinp~nCQVLITvPecleslLlsp----p~~q~~cerIRyiIfDEVH~iG 645 (1330)
T KOG0949|consen 595 --------------------LT----QEYSINPWNCQVLITVPECLESLLLSP----PHHQKFCERIRYIIFDEVHLIG 645 (1330)
T ss_pred --------------------hh----HHhcCCchhceEEEEchHHHHHHhcCc----hhhhhhhhcceEEEechhhhcc
Confidence 11 12221 026899999999988877521 0134489999999999999774
No 224
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=40.62 E-value=81 Score=36.34 Aligned_cols=104 Identities=18% Similarity=0.274 Sum_probs=68.4
Q ss_pred CCCcccccccccHHHHhhhcccCCCCEEEeC-chhHHHHHhhhhcccccCcccCCceeEEEEecchhhh--hcCchHHHH
Q 004428 428 NDDNFSIGIKFTRKSIKLYNDFYTSDMIVAS-PINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL--MQNWSWLIE 504 (754)
Q Consensus 428 ~dD~FriGik~trk~lkLys~Fy~sDIIVAS-PlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL--mQNw~hv~~ 504 (754)
+-|+||||-. .||+-|+.--+..+.||. |==|...|. .|...+++.+|=|-+=. -+..+.+..
T Consensus 240 TtDtYRIGA~---EQLk~Ya~im~vp~~vv~~~~el~~ai~-----------~l~~~d~ILVDTaGrs~~D~~~i~el~~ 305 (407)
T COG1419 240 TTDTYRIGAV---EQLKTYADIMGVPLEVVYSPKELAEAIE-----------ALRDCDVILVDTAGRSQYDKEKIEELKE 305 (407)
T ss_pred EeccchhhHH---HHHHHHHHHhCCceEEecCHHHHHHHHH-----------HhhcCCEEEEeCCCCCccCHHHHHHHHH
Confidence 3589999974 468889888888877775 555666665 36677999999886532 112233444
Q ss_pred HHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC-HHHHHHHHHhh-cCCCceEEEee
Q 004428 505 VVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN-PEINAFFNHHC-ANYQGKVKLAC 569 (754)
Q Consensus 505 Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~-peinsL~~~~~-~N~~G~Vkv~~ 569 (754)
.+... +. .-=-|++|||.- .++..++.+|- .++.|.|-.+-
T Consensus 306 ~~~~~---~~---------------------i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKl 348 (407)
T COG1419 306 LIDVS---HS---------------------IEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKL 348 (407)
T ss_pred HHhcc---cc---------------------ceEEEEEecCcchHHHHHHHHHhccCCcceeEEEcc
Confidence 44332 11 123588999987 55889998874 47777776553
No 225
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=40.08 E-value=76 Score=38.66 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=22.9
Q ss_pred EEEEccchhHHHHHHHHHHHhCCcc
Q 004428 347 VLILLPLKSIALNVVKRLIRLTPDA 371 (754)
Q Consensus 347 VLIL~PTRelA~qIv~~l~~L~~~~ 371 (754)
+|||+|...+|.|+...|..+.|..
T Consensus 57 ~Lvi~~n~~~A~ql~~el~~f~p~~ 81 (655)
T TIGR00631 57 TLVIAHNKTLAAQLYNEFKEFFPEN 81 (655)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCC
Confidence 7999999999999999999997653
No 226
>PRK10638 glutaredoxin 3; Provisional
Probab=39.43 E-value=1.4e+02 Score=25.76 Aligned_cols=59 Identities=10% Similarity=0.034 Sum_probs=38.9
Q ss_pred CcEEEEe-cchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 004428 619 GGIMLFL-SSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTER 677 (754)
Q Consensus 619 ~~tLIFv-~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEr 677 (754)
.++.||. +..--+.+++.+|...++.|..+.=......+.......-.+.+++|+.-++
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~ 61 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQ 61 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence 3567777 6778889999999999999987655544433333333333346777765544
No 227
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=39.20 E-value=59 Score=33.91 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=43.8
Q ss_pred ceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEc-CCCCHHHHHHHHH
Q 004428 482 SIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLS-YHPNPEINAFFNH 556 (754)
Q Consensus 482 SIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFS-At~~peinsL~~~ 556 (754)
+..++||||.-.+|-..|=.+..|++.|+..|.. |.++|+ -..++++..++.-
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~----------------------~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLKARPEH----------------------THVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCC----------------------cEEEEECCCCCHHHHHHHHH
Confidence 5889999999999988888899999999988874 677775 5667778888754
No 228
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=39.07 E-value=1.2e+02 Score=36.11 Aligned_cols=72 Identities=7% Similarity=0.018 Sum_probs=49.0
Q ss_pred CcEEEEecchhcHHHHHHHHH----hCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-ccc--ccC--ccccCCC
Q 004428 619 GGIMLFLSSYFEFVRLRNFLK----SQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RSH--FYH--RYKIRGI 689 (754)
Q Consensus 619 ~~tLIFv~Sy~d~vrlrn~Lk----~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-rah--ffR--r~dIkgV 689 (754)
.++||.+|+..-+..+.+.++ ..++.+..+++..+.....+.+ .+..+|||+|= ++. ..+ .+.+..+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l----~~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELL----QQGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHH----hCCCCEEEECHHHHHHHHHhccccchhhe
Confidence 589999999877766665554 4578899999988876654443 35678999992 211 112 3566777
Q ss_pred CeEEE
Q 004428 690 QNLII 694 (754)
Q Consensus 690 ~~VIf 694 (754)
+.||.
T Consensus 161 ~~lVi 165 (572)
T PRK04537 161 EICVL 165 (572)
T ss_pred eeeEe
Confidence 77775
No 229
>PF13871 Helicase_C_4: Helicase_C-like
Probab=38.99 E-value=42 Score=36.68 Aligned_cols=55 Identities=11% Similarity=0.168 Sum_probs=43.6
Q ss_pred HHHHHHhcCCccEEEEcccccccCcccc--------CCCCeEEEccCCCCCCchhhhccccCCCC
Q 004428 659 RARVWFFEGKRKMILYTERSHFYHRYKI--------RGIQNLIIYSLPERKEFYPEIVNMLEGSH 715 (754)
Q Consensus 659 rar~~F~~G~~~ILL~TErahffRr~dI--------kgV~~VIfY~lP~~pefY~erigrt~ra~ 715 (754)
+.+..|.+|++.|+|.|+-+. =|+-+ .--+.-|...||-+++--+...|||-|++
T Consensus 52 ~e~~~F~~g~k~v~iis~Ags--tGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsn 114 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGS--TGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSN 114 (278)
T ss_pred HHHHHHhCCCceEEEEecccc--cccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccc
Confidence 568899999999999998544 33332 23345577899999999999999999987
No 230
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=38.12 E-value=50 Score=39.46 Aligned_cols=52 Identities=8% Similarity=0.005 Sum_probs=47.6
Q ss_pred cEEEEecchhcHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc
Q 004428 620 GIMLFLSSYFEFVRLRNFLKS----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT 675 (754)
Q Consensus 620 ~tLIFv~Sy~d~vrlrn~Lk~----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T 675 (754)
-.|||.|+..-++.|.++|+. -++.+.+|-|.+++.+..|.+++ +=.|.|||
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVAT 320 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVAT 320 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEec
Confidence 389999999999999999975 59999999999999999999887 66899998
No 231
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=37.64 E-value=85 Score=40.45 Aligned_cols=77 Identities=13% Similarity=0.172 Sum_probs=65.7
Q ss_pred CCCcEEEEecch----hcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeE
Q 004428 617 IQGGIMLFLSSY----FEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNL 692 (754)
Q Consensus 617 ~~~~tLIFv~Sy----~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~V 692 (754)
...+|.|.|||. ..|...+..|+.-.+.+..++-+.+.++....+...++|++.|+|=|=+.- -..+.+++.-.|
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-~kdv~FkdLGLl 720 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-SKDVKFKDLGLL 720 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-CCCcEEecCCeE
Confidence 357899999998 567777777777788999999999999999999999999999999998874 356777777777
Q ss_pred EE
Q 004428 693 II 694 (754)
Q Consensus 693 If 694 (754)
|-
T Consensus 721 II 722 (1139)
T COG1197 721 II 722 (1139)
T ss_pred EE
Confidence 73
No 232
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=37.54 E-value=3.8e+02 Score=33.59 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=47.0
Q ss_pred CCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhccc
Q 004428 452 SDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDG 531 (754)
Q Consensus 452 sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~ 531 (754)
--|+|.|==.++..+. ..-+-.+.+||+||+|++=-+ + ..++..|..+-.
T Consensus 355 ~~vli~sye~~~~~~~---------~il~~~~glLVcDEGHrlkN~--~--s~~~kaL~~l~t----------------- 404 (776)
T KOG0390|consen 355 TPVLIISYETASDYCR---------KILLIRPGLLVCDEGHRLKNS--D--SLTLKALSSLKT----------------- 404 (776)
T ss_pred EEEEeccHHHHHHHHH---------HHhcCCCCeEEECCCCCccch--h--hHHHHHHHhcCC-----------------
Confidence 4466666666666554 234678999999999999522 1 122233322211
Q ss_pred CCCccccEEEEcCCCCH-HHHHHHHHhhcCCCceE
Q 004428 532 YSRFYRQTVLLSYHPNP-EINAFFNHHCANYQGKV 565 (754)
Q Consensus 532 ~ak~~RQTllFSAt~~p-einsL~~~~~~N~~G~V 565 (754)
+--||+|.|.-. ++..+|+-.+.=.||.+
T Consensus 405 -----~rRVLLSGTp~QNdl~EyFnlL~fvrP~~L 434 (776)
T KOG0390|consen 405 -----PRRVLLTGTPIQNDLKEYFNLLDFVRPGFL 434 (776)
T ss_pred -----CceEEeeCCcccccHHHHHHHHhhcChhhc
Confidence 334788888764 48888876665434443
No 233
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=35.77 E-value=1.6e+02 Score=33.84 Aligned_cols=71 Identities=8% Similarity=0.068 Sum_probs=48.0
Q ss_pred CcEEEEecchhcHHHHHHHHH----hCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc-----ccccccCccccCCC
Q 004428 619 GGIMLFLSSYFEFVRLRNFLK----SQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT-----ERSHFYHRYKIRGI 689 (754)
Q Consensus 619 ~~tLIFv~Sy~d~vrlrn~Lk----~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T-----ErahffRr~dIkgV 689 (754)
.++||.+|+..-+..+.+.++ ..++....+++..+....... ..+..+|+|+| +..+ -+.++++.|
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~----l~~~~~IiV~TP~rL~~~~~-~~~~~l~~v 150 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK----LRGGVDVLVATPGRLLDLEH-QNAVKLDQV 150 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHH----HcCCCcEEEEChHHHHHHHH-cCCcccccc
Confidence 369999999987666655554 457788888888776553322 24778999999 2221 244567777
Q ss_pred CeEEE
Q 004428 690 QNLII 694 (754)
Q Consensus 690 ~~VIf 694 (754)
+.||.
T Consensus 151 ~~lVi 155 (456)
T PRK10590 151 EILVL 155 (456)
T ss_pred eEEEe
Confidence 77775
No 234
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=35.36 E-value=1.3e+02 Score=37.22 Aligned_cols=96 Identities=10% Similarity=0.099 Sum_probs=74.0
Q ss_pred CcEEEEecchhcH-HHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHh--cCCccEEEEcccccccCccccCCCCeEEEc
Q 004428 619 GGIMLFLSSYFEF-VRLRNFLKSQNASFCLLGDYTEPSDISRARVWFF--EGKRKMILYTERSHFYHRYKIRGIQNLIIY 695 (754)
Q Consensus 619 ~~tLIFv~Sy~d~-vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~--~G~~~ILL~TErahffRr~dIkgV~~VIfY 695 (754)
+-.+|.|+-...+ .-|+.+|++.+..+..|||-...++|......|. +|..+|||.+=-|. -=|+.+-|..|+|..
T Consensus 746 keK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAG-GVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 746 KEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAG-GVGLNLIGANHLILV 824 (901)
T ss_pred cceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccC-cceeeecccceEEEE
Confidence 3455556544443 2356789999999999999999999999999994 46688888764442 358899999999999
Q ss_pred cCCCCCCchhhhccccCCCC
Q 004428 696 SLPERKEFYPEIVNMLEGSH 715 (754)
Q Consensus 696 ~lP~~pefY~erigrt~ra~ 715 (754)
||==||..=..-|-|+=|-|
T Consensus 825 DlHWNPaLEqQAcDRIYR~G 844 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMG 844 (901)
T ss_pred ecccCHHHHHHHHHHHHHhc
Confidence 99999988777666665544
No 235
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=35.18 E-value=49 Score=31.75 Aligned_cols=66 Identities=15% Similarity=0.094 Sum_probs=37.2
Q ss_pred CCCcEEEEec------chhcHHHHHHHHHhCCCceEee----cCCCCHHHHHHHHHHHhcCC-ccEEEEcccccccC
Q 004428 617 IQGGIMLFLS------SYFEFVRLRNFLKSQNASFCLL----GDYTEPSDISRARVWFFEGK-RKMILYTERSHFYH 682 (754)
Q Consensus 617 ~~~~tLIFv~------Sy~d~vrlrn~Lk~~~~~f~~I----hey~sq~~r~rar~~F~~G~-~~ILL~TErahffR 682 (754)
.....|||+. .+.++..++++|...|++-..| +...+......++..+..-. .+|+|.|+-+|=.|
T Consensus 36 g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~s~~T~ena~~~~~~~~~~~~~~iilVT~~~H~~R 112 (155)
T PF02698_consen 36 GYAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPKSTNTYENARFSKRLLKERGWQSIILVTSPYHMRR 112 (155)
T ss_dssp HHT--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE----SHHHHHHHHHHHHHT-SSS-EEEE--CCCHHH
T ss_pred CCCCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCCCCCHHHHHHHHHHHHHhhcCCeEEEECCHHHHHH
Confidence 4456688887 6679999999999999885444 34445555555666666433 59999999998444
No 236
>PRK06893 DNA replication initiation factor; Validated
Probab=34.90 E-value=28 Score=36.16 Aligned_cols=21 Identities=14% Similarity=0.560 Sum_probs=16.8
Q ss_pred CCceeEEEEecchhhh-hcCch
Q 004428 480 LSSIEVLIIDHADIIL-MQNWS 500 (754)
Q Consensus 480 LSSIEiLVlDeAD~mL-mQNw~ 500 (754)
+.+.++||||+.|.+. ...|+
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~ 110 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWE 110 (229)
T ss_pred cccCCEEEEeChhhhcCChHHH
Confidence 4577899999999986 55575
No 237
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=34.32 E-value=68 Score=32.17 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=40.6
Q ss_pred CceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEE-cCCCCHHHHHHHH
Q 004428 481 SSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLL-SYHPNPEINAFFN 555 (754)
Q Consensus 481 SSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllF-SAt~~peinsL~~ 555 (754)
....+|||||+-..+-.+|-....|++.|...|. ++.+++ +-..|+++..++.
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~----------------------~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPE----------------------DLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCC----------------------CCEEEEECCCCCHHHHHhCc
Confidence 3568999999999988888888899999887776 455555 5666677776663
No 238
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=33.97 E-value=1.5e+02 Score=32.96 Aligned_cols=90 Identities=16% Similarity=0.270 Sum_probs=55.7
Q ss_pred HHhhhcccCCCCEEEeCch-------------h---HHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHH
Q 004428 442 SIKLYNDFYTSDMIVASPI-------------N---LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEV 505 (754)
Q Consensus 442 ~lkLys~Fy~sDIIVASPl-------------g---Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~I 505 (754)
+-+++..-.++|+++-+|- + +|.+++.. .-.-..+.-.|+|||++|.|-.+ ....+
T Consensus 62 ~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~l~~~~-----~~~p~~~~~kV~iiEp~~~Ld~~---a~naL 133 (325)
T PRK08699 62 SCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREIIDNV-----YLTSVRGGLRVILIHPAESMNLQ---AANSL 133 (325)
T ss_pred HHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHHHHHHH-----hhCcccCCceEEEEechhhCCHH---HHHHH
Confidence 4445555577888888873 2 24444321 11123467789999999999643 23345
Q ss_pred HHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCC
Q 004428 506 VEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANY 561 (754)
Q Consensus 506 l~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~ 561 (754)
++.|..+|. .-++++.++.+..+...+...|.-+
T Consensus 134 Lk~LEep~~----------------------~~~~Ilvth~~~~ll~ti~SRc~~~ 167 (325)
T PRK08699 134 LKVLEEPPP----------------------QVVFLLVSHAADKVLPTIKSRCRKM 167 (325)
T ss_pred HHHHHhCcC----------------------CCEEEEEeCChHhChHHHHHHhhhh
Confidence 555544443 3578887777777777777778753
No 239
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=33.57 E-value=28 Score=40.18 Aligned_cols=11 Identities=9% Similarity=0.187 Sum_probs=4.8
Q ss_pred chhHHHHHHHH
Q 004428 292 SNIMETYLMHS 302 (754)
Q Consensus 292 tgkt~ay~Lh~ 302 (754)
.-+-+||+-++
T Consensus 204 RPLE~AY~Scl 214 (458)
T PF10446_consen 204 RPLEAAYISCL 214 (458)
T ss_pred chHHHHHHHHH
Confidence 33444554443
No 240
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=33.34 E-value=1.8e+02 Score=24.39 Aligned_cols=63 Identities=8% Similarity=0.050 Sum_probs=42.5
Q ss_pred EEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCcccc
Q 004428 622 MLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKI 686 (754)
Q Consensus 622 LIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dI 686 (754)
|...++.-.+.+++++|.+.+++|..++-......+..... .-...+++++.-+. .++.||+-
T Consensus 3 ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~-~g~~~vP~v~~~g~-~~~~G~~~ 65 (72)
T TIGR02194 3 VYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKA-QGFRQVPVIVADGD-LSWSGFRP 65 (72)
T ss_pred EEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCcccCEEEECCC-cEEeccCH
Confidence 34447888999999999999999998887766655554432 22235788877543 23455553
No 241
>PRK13766 Hef nuclease; Provisional
Probab=33.30 E-value=1.3e+02 Score=36.95 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=50.2
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhC-C---CceEeecCCCCHHHHHHHHHHHhcCCccEEEEccccc----ccCccccCC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQ-N---ASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSH----FYHRYKIRG 688 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~-~---~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErah----ffRr~dIkg 688 (754)
..+++||.+|+..-.......|++. + ..+..+++..+..+|.... . ...|+++|-... ...++.+..
T Consensus 57 ~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~---~--~~~iiv~T~~~l~~~l~~~~~~~~~ 131 (773)
T PRK13766 57 KGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELW---E--KAKVIVATPQVIENDLIAGRISLED 131 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHH---h--CCCEEEECHHHHHHHHHcCCCChhh
Confidence 4579999999987775555555542 3 3788899999888765433 2 357999885311 125667777
Q ss_pred CCeEEEcc
Q 004428 689 IQNLIIYS 696 (754)
Q Consensus 689 V~~VIfY~ 696 (754)
+..||+=.
T Consensus 132 ~~liVvDE 139 (773)
T PRK13766 132 VSLLIFDE 139 (773)
T ss_pred CcEEEEEC
Confidence 77777654
No 242
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=32.80 E-value=42 Score=43.08 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=18.4
Q ss_pred hhhhhhcCccHHHHHHHHhccCCcchhhHHHH
Q 004428 56 VEEIIYKEPSVYDNLLMKLGSSSESVADAFKI 87 (754)
Q Consensus 56 ~~~~~~~~~~~y~~ll~~~~~~~~~~~~~~~~ 87 (754)
+++....-|.+-..-|-+=++++...++..-+
T Consensus 1692 ddeaqd~iptprrrrllsgnttndtnaDnEEr 1723 (3015)
T KOG0943|consen 1692 DDEAQDDIPTPRRRRLLSGNTTNDTNADNEER 1723 (3015)
T ss_pred CccccccCCCchhhhhccCCccCccccchhhh
Confidence 44444445555566666667777766655444
No 243
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=32.29 E-value=35 Score=42.18 Aligned_cols=6 Identities=50% Similarity=0.240 Sum_probs=2.3
Q ss_pred HHHHHh
Q 004428 69 NLLMKL 74 (754)
Q Consensus 69 ~ll~~~ 74 (754)
.||.-|
T Consensus 627 ~ll~vl 632 (784)
T PF04931_consen 627 LLLDVL 632 (784)
T ss_pred HHHHHh
Confidence 333333
No 244
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=32.25 E-value=53 Score=39.17 Aligned_cols=68 Identities=10% Similarity=0.024 Sum_probs=38.4
Q ss_pred CCCceEeecCCCCHHHHHHHHHHHhcCCcc----EEE-Eccc---------ccccCccccCCCCeEEEccCCCCCCchhh
Q 004428 641 QNASFCLLGDYTEPSDISRARVWFFEGKRK----MIL-YTER---------SHFYHRYKIRGIQNLIIYSLPERKEFYPE 706 (754)
Q Consensus 641 ~~~~f~~Ihey~sq~~r~rar~~F~~G~~~----ILL-~TEr---------ahffRr~dIkgV~~VIfY~lP~~pefY~e 706 (754)
.+-++..-.+-.+-.....-+..+..|.++ +|. ..|+ .+|-+|...=-|.+.++++=|..+..+..
T Consensus 306 Lgep~~~~~~~~~~~~L~~rre~y~~~~vP~~v~~ltagVDvQ~~rle~~v~gwg~~~e~w~Id~~~i~g~~~~~~~w~~ 385 (557)
T PF05876_consen 306 LGEPWEDKGEAPDWEELLARREDYPRGEVPDGVLFLTAGVDVQDDRLEVEVVGWGPGEESWLIDYGVIPGDPADPEVWDA 385 (557)
T ss_pred cccCccccccccchHHHHHhhcccccccCCCCceEEEEEEEecCCEEEEEEEEECCCCcEEEEEEEEEeCCCCchHHHHH
Confidence 355555554444445555555556555542 332 2444 33444444446777788888888887766
Q ss_pred hc
Q 004428 707 IV 708 (754)
Q Consensus 707 ri 708 (754)
+-
T Consensus 386 L~ 387 (557)
T PF05876_consen 386 LD 387 (557)
T ss_pred HH
Confidence 63
No 245
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=31.99 E-value=2.8e+02 Score=31.37 Aligned_cols=69 Identities=13% Similarity=0.079 Sum_probs=44.4
Q ss_pred EeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEec-----chhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHH
Q 004428 588 RFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLS-----SYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRAR 661 (754)
Q Consensus 588 r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~-----Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar 661 (754)
.+.|+......+.|+++... .+.+....+||.|+. .-.++..|++.|++.|+++..|..+.+++ +.+.+
T Consensus 288 ~~~C~~~~~p~~~R~~~i~~----lv~~~~~DGVI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L~iE~D~~~~-~gQi~ 361 (377)
T TIGR03190 288 RPACPTKDYPVHTRYDHVLG----LAKEYNVQGAIFLQQKFCDPHEGDYPDLKRHLEANGIPTLFLEFDITNP-IGPFR 361 (377)
T ss_pred CCCCCCcCCCHHHHHHHHHH----HHHHhCCCEEEEecccCCCcchhhhHHHHHHHHHCCCCEEEEecCCCCc-hHHHH
Confidence 34554432234668875443 234445677777654 33788899999999999999997666543 44433
No 246
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=31.51 E-value=1.9e+02 Score=35.89 Aligned_cols=74 Identities=14% Similarity=0.207 Sum_probs=63.0
Q ss_pred CCcEEEEecchhcHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEE
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQ-NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLII 694 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~-~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIf 694 (754)
..++||-||....-.++-+.|+.. |.+++.+|...++++|.+...+.+.|+.+|.|=|=-|-|- -+++...||-
T Consensus 245 GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~---Pf~~LGLIIv 319 (730)
T COG1198 245 GKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL---PFKNLGLIIV 319 (730)
T ss_pred CCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC---chhhccEEEE
Confidence 478999999988888888887753 7999999999999999999999999999999988777654 5667777763
No 247
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=31.37 E-value=1.5e+02 Score=38.54 Aligned_cols=68 Identities=15% Similarity=-0.002 Sum_probs=51.8
Q ss_pred HhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhc--CCccEEEEc-ccc
Q 004428 609 VFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFE--GKRKMILYT-ERS 678 (754)
Q Consensus 609 iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~--G~~~ILL~T-Era 678 (754)
.||.|.. .+-+||.+|...-..--...|...++.++.|++.++..+..+.+..+.. |+.+||+.| |++
T Consensus 493 QLPAL~~--~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL 563 (1195)
T PLN03137 493 QLPALIC--PGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKV 563 (1195)
T ss_pred HHHHHHc--CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHh
Confidence 5566643 4679999998765543334456679999999999999988888888876 999999988 443
No 248
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=30.79 E-value=68 Score=38.14 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=15.0
Q ss_pred CCchhhhcCCCCCHHHHHHHhc
Q 004428 178 ASSFHEHFGYNLSKEEVDDLSK 199 (754)
Q Consensus 178 ~d~F~~Hf~~~~~~~~~~~l~~ 199 (754)
.--|-..+.++.++++|...-.
T Consensus 293 ~tVFvRNL~fD~tEEel~~~fs 314 (678)
T KOG0127|consen 293 KTVFVRNLPFDTTEEELKEHFS 314 (678)
T ss_pred ceEEEecCCccccHHHHHHHHH
Confidence 3457777777778888876543
No 249
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=30.56 E-value=49 Score=40.39 Aligned_cols=8 Identities=25% Similarity=0.667 Sum_probs=3.3
Q ss_pred chhHHHHH
Q 004428 459 PINLHQKM 466 (754)
Q Consensus 459 PlgLr~lI 466 (754)
|+-|+++|
T Consensus 480 p~alk~~i 487 (822)
T KOG2141|consen 480 PLALKDII 487 (822)
T ss_pred hHHHHHHH
Confidence 44444433
No 250
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=29.43 E-value=1.2e+02 Score=35.64 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=19.4
Q ss_pred CceEEEEccchhHHHHHHHHHHHh
Q 004428 344 RPKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 344 RPkVLIL~PTRelA~qIv~~l~~L 367 (754)
+|++||.|+||..|..+.+.|...
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~ 390 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVV 390 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhc
Confidence 578999999999988888777653
No 251
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=28.70 E-value=1.9e+02 Score=32.53 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=22.8
Q ss_pred CCceeEEEEecchhhhhcCchHHHHHHHHhccCCC
Q 004428 480 LSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPS 514 (754)
Q Consensus 480 LSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk 514 (754)
.+.-.|+|||+||+|-.+ --..+++.|--+|.
T Consensus 130 ~~~~kV~iI~~ae~m~~~---AaNaLLKtLEEPp~ 161 (342)
T PRK06964 130 RGGARVVVLYPAEALNVA---AANALLKTLEEPPP 161 (342)
T ss_pred cCCceEEEEechhhcCHH---HHHHHHHHhcCCCc
Confidence 456679999999999643 34456666666775
No 252
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=28.31 E-value=2.5e+02 Score=35.33 Aligned_cols=129 Identities=11% Similarity=0.120 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHhHHhhh--cCCCcEEEEecchhcHHHHHHHHHhCCCceEee-cCCCCHHHHHHHHHHHhcCC-ccEEE
Q 004428 598 DDARLEYFTKKVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLL-GDYTEPSDISRARVWFFEGK-RKMIL 673 (754)
Q Consensus 598 ~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~I-hey~sq~~r~rar~~F~~G~-~~ILL 673 (754)
...+|. .+++.+.. ....++||-..|+..-..+.+.|++.+|+-..| ..|- .+..-.-+ ..|+ --|-|
T Consensus 411 ~~~K~~----Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h---~~EA~Iia-~AG~~gaVTi 482 (822)
T COG0653 411 EEEKFK----AIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH---AREAEIIA-QAGQPGAVTI 482 (822)
T ss_pred hHHHHH----HHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH---HHHHHHHh-hcCCCCcccc
Confidence 345554 67777754 356899999999999999999999999998444 4443 22222222 3454 37889
Q ss_pred EcccccccCccccCCCCeEEEccCCCCCCchh-----hhc---------------cccCCCCCceEEEEechhcHHHHHH
Q 004428 674 YTERSHFYHRYKIRGIQNLIIYSLPERKEFYP-----EIV---------------NMLEGSHNMTCTVLFSRFDMLRLER 733 (754)
Q Consensus 674 ~TErahffRr~dIkgV~~VIfY~lP~~pefY~-----eri---------------grt~ra~~g~~~~L~sk~D~~~LEr 733 (754)
+|-.|. ||-||+=.. +|++-. |+| ||.||-|+..+..+|...+- .|-|
T Consensus 483 ATNMAG--RGTDIkLg~---------~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD-~L~r 550 (822)
T COG0653 483 ATNMAG--RGTDIKLGG---------NPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED-DLMR 550 (822)
T ss_pred cccccc--CCcccccCC---------CHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH-HHHH
Confidence 999999 999997433 333111 111 34444445555556655543 3456
Q ss_pred HhCchHHHHhhhc
Q 004428 734 IVGSAHAKKMVKS 746 (754)
Q Consensus 734 IVGt~ra~~m~~s 746 (754)
+.|..+...|+.-
T Consensus 551 ~F~~d~~~~~~~~ 563 (822)
T COG0653 551 RFASDRLPALMDK 563 (822)
T ss_pred HhcchhhHHHHHh
Confidence 6677777777754
No 253
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=28.30 E-value=3e+02 Score=21.69 Aligned_cols=56 Identities=13% Similarity=0.014 Sum_probs=35.4
Q ss_pred EEEEe-cchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc
Q 004428 621 IMLFL-SSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE 676 (754)
Q Consensus 621 tLIFv-~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE 676 (754)
+.||. +..-.+.+++.+|.+.++.|..+.-......+..-....-....++|+.-+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~ 58 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFING 58 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECC
Confidence 44555 677889999999999999988776655544222222222224566666543
No 254
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=28.17 E-value=4.9e+02 Score=32.88 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=38.3
Q ss_pred hhhcccCCCCEEEeCchhHH-HHHhhhhcccccCcccCCceeEEEEecchhhhhcCc--hHHHHHHHHhc
Q 004428 444 KLYNDFYTSDMIVASPINLH-QKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNW--SWLIEVVEQLN 510 (754)
Q Consensus 444 kLys~Fy~sDIIVASPlgLr-~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw--~hv~~Il~~Ln 510 (754)
++|. ..-||++||-=|. |++. +...++.|..+|+|+||++. +|+ .++..++..-|
T Consensus 3 ~ly~---~ggi~~~T~rIl~~DlL~--------~ri~~~~itgiiv~~Ahr~~-~~~~eaFI~rlyr~~n 60 (814)
T TIGR00596 3 KVYL---EGGIFSITSRILVVDLLT--------GIIPPELITGILVLRADRII-ESSQEAFILRLYRQKN 60 (814)
T ss_pred hHhh---cCCEEEEechhhHhHHhc--------CCCCHHHccEEEEeeccccc-ccccHHHHHHHHHHhC
Confidence 3554 4789999997765 3554 23458999999999999996 344 35555554444
No 255
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=28.16 E-value=71 Score=34.10 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=31.2
Q ss_pred HHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEe
Q 004428 441 KSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIID 489 (754)
Q Consensus 441 k~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlD 489 (754)
.++++... ..+..-||||+|+..+++. -++ .++....+|||
T Consensus 187 ~~~k~~k~-~~v~~gIgTp~Ri~~lv~~------~~f-~~~~lk~iIlD 227 (271)
T KOG3089|consen 187 AQVKLLKK-RVVHLGIGTPGRIKELVKQ------GGF-NLSPLKFIILD 227 (271)
T ss_pred HHHHHHhh-cceeEeecCcHHHHHHHHh------cCC-CCCcceeEEee
Confidence 35565544 6788999999999999974 233 48899999887
No 256
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=27.60 E-value=56 Score=35.43 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=33.0
Q ss_pred cccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHH
Q 004428 435 GIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQ 508 (754)
Q Consensus 435 Gik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~ 508 (754)
||..-|..+|.|++-. -.+---.-.++||||||.|-.+--.-+...++.
T Consensus 91 GIDvVRn~IK~FAQ~k-------------------------v~lp~grhKIiILDEADSMT~gAQQAlRRtMEi 139 (333)
T KOG0991|consen 91 GIDVVRNKIKMFAQKK-------------------------VTLPPGRHKIIILDEADSMTAGAQQALRRTMEI 139 (333)
T ss_pred ccHHHHHHHHHHHHhh-------------------------ccCCCCceeEEEeeccchhhhHHHHHHHHHHHH
Confidence 8999999999887521 011113567999999999975433455555554
No 257
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=27.57 E-value=2.4e+02 Score=28.00 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=35.2
Q ss_pred cEEEEecc-------hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHH
Q 004428 620 GIMLFLSS-------YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWF 664 (754)
Q Consensus 620 ~tLIFv~S-------y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F 664 (754)
+++||..| +.+..+++.+|+..++.|..+.=.+....+..-+...
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~ 52 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELL 52 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh
Confidence 46777776 8999999999999999999888777766565544433
No 258
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=27.30 E-value=2.1e+02 Score=31.81 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=23.9
Q ss_pred cCCceeEEEEecchhhhhcCchHHHHHHHHhccCCC
Q 004428 479 YLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPS 514 (754)
Q Consensus 479 fLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk 514 (754)
+.+.-.|+|||+||+|-. +-...+++.|-.+|.
T Consensus 103 ~~~~~kv~iI~~a~~m~~---~aaNaLLK~LEEPp~ 135 (328)
T PRK05707 103 QLGGRKVVLIEPAEAMNR---NAANALLKSLEEPSG 135 (328)
T ss_pred ccCCCeEEEECChhhCCH---HHHHHHHHHHhCCCC
Confidence 356678999999999964 334566667766675
No 259
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=27.16 E-value=2.1e+02 Score=32.38 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=22.2
Q ss_pred CCceeEEEEecchhhhhcCchHHHHHHHHhccCCC
Q 004428 480 LSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPS 514 (754)
Q Consensus 480 LSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk 514 (754)
.+.-.|+|||+||.|-. .-...+++.|..+|.
T Consensus 139 ~~~~kVviIDead~m~~---~aanaLLK~LEepp~ 170 (365)
T PRK07471 139 EGGWRVVIVDTADEMNA---NAANALLKVLEEPPA 170 (365)
T ss_pred cCCCEEEEEechHhcCH---HHHHHHHHHHhcCCC
Confidence 45678999999999853 334456666666664
No 260
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=27.04 E-value=5.8e+02 Score=32.46 Aligned_cols=82 Identities=15% Similarity=0.246 Sum_probs=55.6
Q ss_pred cCCCcEEEEecchhcHHHHHHHHH------hC-CCceEeecCCCCHHHHHHHHHHHhcCC--------ccEEEEcccccc
Q 004428 616 SIQGGIMLFLSSYFEFVRLRNFLK------SQ-NASFCLLGDYTEPSDISRARVWFFEGK--------RKMILYTERSHF 680 (754)
Q Consensus 616 ~~~~~tLIFv~Sy~d~vrlrn~Lk------~~-~~~f~~Ihey~sq~~r~rar~~F~~G~--------~~ILL~TErahf 680 (754)
....++|||.|||.--.++..+.+ .. ++.- .+.|=.+..+-..++..|.++- +-+.|+---.+
T Consensus 559 vVp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVS- 636 (945)
T KOG1132|consen 559 VVPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVS- 636 (945)
T ss_pred hcccceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEeccccc-
Confidence 456789999999965555533332 21 2222 5667667777777788886543 34556666666
Q ss_pred cCccccCC--CCeEEEccCCCC
Q 004428 681 YHRYKIRG--IQNLIIYSLPER 700 (754)
Q Consensus 681 fRr~dIkg--V~~VIfY~lP~~ 700 (754)
.|+|+.+ -+-||--+||--
T Consensus 637 -EGlDFsD~~~RaVI~tGlPyP 657 (945)
T KOG1132|consen 637 -EGLDFSDDNGRAVIITGLPYP 657 (945)
T ss_pred -CCCCccccCCceeEEecCCCC
Confidence 9999976 788999999953
No 261
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=26.87 E-value=99 Score=31.53 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=39.8
Q ss_pred ceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEE-cCCCCHHHHHHHH
Q 004428 482 SIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLL-SYHPNPEINAFFN 555 (754)
Q Consensus 482 SIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllF-SAt~~peinsL~~ 555 (754)
...+|||||+-..+..+|=....|++.|...|.. ..+++ .-..|+++..++.
T Consensus 97 ~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~----------------------~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 97 ELDLVLLDELTYALKYGYLDVEEVVEALQERPGH----------------------QHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCC----------------------CEEEEECCCCCHHHHHhCc
Confidence 5689999999999987887788888888877763 44444 5666777877764
No 262
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=26.54 E-value=1.1e+02 Score=37.09 Aligned_cols=73 Identities=12% Similarity=0.250 Sum_probs=57.7
Q ss_pred HHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC
Q 004428 608 KVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR 687 (754)
Q Consensus 608 ~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk 687 (754)
.+.|.+.+...+.+.|-|+++.|+..+-..|+ ++.+|+-+...=+.|.+|.+=|++| +-.|+.+
T Consensus 645 ~ii~~mkk~~~etiaVi~kt~~d~~~~~d~lr----------e~~~~r~I~k~nq~f~~~~~vipvy-----~aKGlEF- 708 (747)
T COG3973 645 DIIPRMKKRGSETIAVICKTDHDCKAVMDSLR----------EKDSQRTIAKENQRFHHGSDVIPVY-----DAKGLEF- 708 (747)
T ss_pred HHHHHHHhcCCCceEEECCcHHHHHHHHHHHh----------hcchhhHHHhhcccccCCceEEEee-----eccccee-
Confidence 35666666677888999999999999888887 6678888888888899999888876 2366655
Q ss_pred CCCeEEEccCC
Q 004428 688 GIQNLIIYSLP 698 (754)
Q Consensus 688 gV~~VIfY~lP 698 (754)
.|||-|++-
T Consensus 709 --D~viv~d~s 717 (747)
T COG3973 709 --DHVIVVDPS 717 (747)
T ss_pred --eeEEEecch
Confidence 588999975
No 263
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=26.07 E-value=1e+02 Score=38.68 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=22.1
Q ss_pred CCceeEEEEecchhhhhcCchHHHHHHHHhccCCC
Q 004428 480 LSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPS 514 (754)
Q Consensus 480 LSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk 514 (754)
.+.-.|+||||||.|-.+-+. .+++.|...|.
T Consensus 118 ~~~~KV~IIDEad~lt~~a~N---aLLK~LEEpP~ 149 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFN---ALLKIVEEPPE 149 (824)
T ss_pred cCCceEEEEechhhcCHHHHH---HHHHHHhCCCC
Confidence 356789999999999754444 45555555565
No 264
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=25.98 E-value=1.8e+02 Score=24.29 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=37.3
Q ss_pred EEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 004428 621 IMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTER 677 (754)
Q Consensus 621 tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEr 677 (754)
.||.|-.++|...+.+.+.. +..+.+++|-....+..+.+..+... .+|++++|-
T Consensus 2 ~l~ivEg~~da~~~~~~~~~-~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~ 56 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGF-GGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDP 56 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCC-CEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCC
Confidence 57888999999988887753 34556666655444444455555554 679999984
No 265
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=25.83 E-value=2.9e+02 Score=21.98 Aligned_cols=55 Identities=7% Similarity=0.085 Sum_probs=35.5
Q ss_pred EEEe-cchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc
Q 004428 622 MLFL-SSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE 676 (754)
Q Consensus 622 LIFv-~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE 676 (754)
.+|. +..-.+.+++..|.+.++.+..+.-.........-+.....+.+++|+--+
T Consensus 3 ~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~ 58 (73)
T cd02976 3 TVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGD 58 (73)
T ss_pred EEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECC
Confidence 4444 457788999999999999988876554433333333333456788887543
No 266
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=24.62 E-value=65 Score=32.70 Aligned_cols=28 Identities=32% Similarity=0.467 Sum_probs=19.5
Q ss_pred ceeEEEEecchhhh-hcCchHHHHHHHHh
Q 004428 482 SIEVLIIDHADIIL-MQNWSWLIEVVEQL 509 (754)
Q Consensus 482 SIEiLVlDeAD~mL-mQNw~hv~~Il~~L 509 (754)
..-++||||.|.=| .+|+..+..++..+
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~ 186 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKEL 186 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccc
Confidence 45799999999988 56666666665543
No 267
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=24.50 E-value=2.4e+02 Score=30.30 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=39.5
Q ss_pred cHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhh
Q 004428 630 EFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPE 706 (754)
Q Consensus 630 d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~e 706 (754)
|+..+...|+..+..++.+..|.-..+-.++. +.-..++++.+|... |++ .++.|||..+.....-|.+
T Consensus 68 d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~---k~~~~~l~~iDD~~~--~~~---~~D~vin~~~~~~~~~y~~ 136 (279)
T TIGR03590 68 DALELINLLEEEKFDILIVDHYGLDADWEKLI---KEFGRKILVIDDLAD--RPH---DCDLLLDQNLGADASDYQG 136 (279)
T ss_pred hHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHH---HHhCCeEEEEecCCC--CCc---CCCEEEeCCCCcCHhHhcc
Confidence 44455555555555566666664444433332 233458888888765 555 6677887766544444543
No 268
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=24.18 E-value=74 Score=28.99 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=16.5
Q ss_pred eEEEEecchhhhhcCchHHHHHHHHhc
Q 004428 484 EVLIIDHADIILMQNWSWLIEVVEQLN 510 (754)
Q Consensus 484 EiLVlDeAD~mLmQNw~hv~~Il~~Ln 510 (754)
-+|||||||.|. +.+.+..+...+|
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLN 113 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTC
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHh
Confidence 899999999974 3444444444333
No 269
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=24.12 E-value=3.7e+02 Score=24.30 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=27.7
Q ss_pred CCcEEEEe------cchhcHHHHHHHHHhCCCceEeecC
Q 004428 618 QGGIMLFL------SSYFEFVRLRNFLKSQNASFCLLGD 650 (754)
Q Consensus 618 ~~~tLIFv------~Sy~d~vrlrn~Lk~~~~~f~~Ihe 650 (754)
..+++||. |.+--+.+++++|...+++|..+.=
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di 49 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNV 49 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEEC
Confidence 57899997 4577888999999999999987643
No 270
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=23.72 E-value=2.7e+02 Score=33.84 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=47.5
Q ss_pred CHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccc
Q 004428 259 SSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFL 338 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~R 338 (754)
++.|+.++-..+..+-++.+..-| ||||.. +..+|..+++..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpG---------TGKTt~-v~~ll~~l~~~~---------------------------- 195 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPG---------TGKTTT-VAKLLAALIQLA---------------------------- 195 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCC---------CCHHHH-HHHHHHHHHHhc----------------------------
Confidence 579999999999988888866555 888743 223333333210
Q ss_pred cCCCCCceEEEEccchhHHHHHHHHHHHh
Q 004428 339 DRGFTRPKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 339 DQGftRPkVLIL~PTRelA~qIv~~l~~L 367 (754)
++ ...+|++++||...|.++.+.+...
T Consensus 196 -~~-~~~~i~l~APTgkAA~rL~e~~~~~ 222 (615)
T PRK10875 196 -DG-ERCRIRLAAPTGKAAARLTESLGKA 222 (615)
T ss_pred -CC-CCcEEEEECCcHHHHHHHHHHHHhh
Confidence 00 1357999999999999999877643
No 271
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=23.49 E-value=2.6e+02 Score=33.84 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=23.8
Q ss_pred cCCceeEEEEecchhhhhcCchHHHHHHHHhccCCC
Q 004428 479 YLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPS 514 (754)
Q Consensus 479 fLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk 514 (754)
|.+.-.++||||||.|-.. ....+++.|..+|.
T Consensus 129 ~~a~~KVvIIDEad~Ls~~---a~naLLKtLEePp~ 161 (598)
T PRK09111 129 VSARYKVYIIDEVHMLSTA---AFNALLKTLEEPPP 161 (598)
T ss_pred hcCCcEEEEEEChHhCCHH---HHHHHHHHHHhCCC
Confidence 5678899999999998643 34456666666665
No 272
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=23.43 E-value=2.7e+02 Score=31.05 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=37.5
Q ss_pred cCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhh
Q 004428 479 YLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHC 558 (754)
Q Consensus 479 fLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~ 558 (754)
+.+.-.|+|||+||.|-.+ --..+++.|--+|. +=.+++.++.+..+-..+..-|
T Consensus 105 ~~~~~kV~iI~~ae~m~~~---AaNaLLKtLEEPp~----------------------~t~fiL~t~~~~~lLpTI~SRC 159 (319)
T PRK06090 105 QLNGYRLFVIEPADAMNES---ASNALLKTLEEPAP----------------------NCLFLLVTHNQKRLLPTIVSRC 159 (319)
T ss_pred ccCCceEEEecchhhhCHH---HHHHHHHHhcCCCC----------------------CeEEEEEECChhhChHHHHhcc
Confidence 3566899999999999643 34566777777776 3345566666555555555556
Q ss_pred cC
Q 004428 559 AN 560 (754)
Q Consensus 559 ~N 560 (754)
..
T Consensus 160 q~ 161 (319)
T PRK06090 160 QQ 161 (319)
T ss_pred ee
Confidence 64
No 273
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=23.42 E-value=1.3e+02 Score=36.68 Aligned_cols=75 Identities=12% Similarity=0.119 Sum_probs=61.3
Q ss_pred CCcEEEEecc----hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEE
Q 004428 618 QGGIMLFLSS----YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 618 ~~~tLIFv~S----y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI 693 (754)
..++.+-+|| ...|..++++|...|+.++.+-|.++.++|..++....+|.++|+|=|=-. |.-.-.+.+.-.||
T Consensus 311 G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL-iQd~V~F~~LgLVI 389 (677)
T COG1200 311 GYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL-IQDKVEFHNLGLVI 389 (677)
T ss_pred CCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh-hhcceeecceeEEE
Confidence 4578889998 478999999999999999999999999999999999999999999988533 44444444444444
No 274
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.32 E-value=1.1e+02 Score=36.07 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=19.8
Q ss_pred ceeEEEEecchhhhhcCchHHHHHHHHhccCCC
Q 004428 482 SIEVLIIDHADIILMQNWSWLIEVVEQLNRIPS 514 (754)
Q Consensus 482 SIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk 514 (754)
.-.|+||||||.|-- +-...+++.|...|.
T Consensus 121 ~~KV~IIDEah~Ls~---~A~NALLKtLEEPp~ 150 (484)
T PRK14956 121 KYKVYIIDEVHMLTD---QSFNALLKTLEEPPA 150 (484)
T ss_pred CCEEEEEechhhcCH---HHHHHHHHHhhcCCC
Confidence 357999999998853 334445666655554
No 275
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=22.79 E-value=3.7e+02 Score=22.61 Aligned_cols=53 Identities=11% Similarity=-0.009 Sum_probs=36.4
Q ss_pred ecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 004428 625 LSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTER 677 (754)
Q Consensus 625 v~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEr 677 (754)
-++.-.+.+++++|++.++.|..++-......+..-...--...++.++.-+.
T Consensus 6 ~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~ 58 (79)
T TIGR02181 6 KPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDV 58 (79)
T ss_pred cCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence 36788999999999999999988877766544443332222335677766554
No 276
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.79 E-value=3.3e+02 Score=34.05 Aligned_cols=104 Identities=17% Similarity=0.284 Sum_probs=64.2
Q ss_pred CCcccccccccHHHHhhhcccCCCCEE-EeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHH
Q 004428 429 DDNFSIGIKFTRKSIKLYNDFYTSDMI-VASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVE 507 (754)
Q Consensus 429 dD~FriGik~trk~lkLys~Fy~sDII-VASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~ 507 (754)
-|.||+|. ..+++.|....+..+. +.+|--|...|.. ++..+++|||=|=++.- + ..+...+.
T Consensus 223 ~Dt~RigA---~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-----------~~~~D~VLIDTAGRs~~-d-~~l~eel~ 286 (767)
T PRK14723 223 TDSFRIGA---LEQLRIYGRILGVPVHAVKDAADLRFALAA-----------LGDKHLVLIDTVGMSQR-D-RNVSEQIA 286 (767)
T ss_pred CcccchHH---HHHHHHHHHhCCCCccccCCHHHHHHHHHH-----------hcCCCEEEEeCCCCCcc-C-HHHHHHHH
Confidence 46788886 3578889888887664 5688888887762 44557999999987651 1 11222222
Q ss_pred HhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC-HHHHHHHHHhhc----CCCceEEEe
Q 004428 508 QLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN-PEINAFFNHHCA----NYQGKVKLA 568 (754)
Q Consensus 508 ~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~-peinsL~~~~~~----N~~G~Vkv~ 568 (754)
.+... ....+=-|++|||.. ..++.++..|.. ++.|.|-.+
T Consensus 287 ~l~~~--------------------~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTK 332 (767)
T PRK14723 287 MLCGV--------------------GRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITK 332 (767)
T ss_pred HHhcc--------------------CCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEec
Confidence 22110 011234578888876 457778877754 455555433
No 277
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=22.78 E-value=2.7e+02 Score=30.72 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=22.7
Q ss_pred cCCceeEEEEecchhhhhcCchHHHHHHHHhccCC
Q 004428 479 YLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIP 513 (754)
Q Consensus 479 fLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~P 513 (754)
+.+.-.|+|||+||.|-.. -...+++.|-.+|
T Consensus 121 ~~~~~kVvII~~ae~m~~~---aaNaLLK~LEEPp 152 (314)
T PRK07399 121 LEAPRKVVVIEDAETMNEA---AANALLKTLEEPG 152 (314)
T ss_pred ccCCceEEEEEchhhcCHH---HHHHHHHHHhCCC
Confidence 4567789999999999543 3445666666666
No 278
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=22.75 E-value=73 Score=41.17 Aligned_cols=47 Identities=26% Similarity=0.318 Sum_probs=30.0
Q ss_pred CCCCCceeeccCCCCCcccc-ccccc--HHHHhhhcccCCCCEEEeCchh
Q 004428 415 SKPSDYQILFGGNNDDNFSI-GIKFT--RKSIKLYNDFYTSDMIVASPIN 461 (754)
Q Consensus 415 ~KP~D~~~lF~GN~dD~Fri-Gik~t--rk~lkLys~Fy~sDIIVASPlg 461 (754)
..|..-+.+||.=.+|.||- |--|. ..+|.+......+-+.-|+||-
T Consensus 2056 ~~~L~AqrlfgdilndafR~mgrmfa~eEAkinf~E~~ekall~pA~pG~ 2105 (3015)
T KOG0943|consen 2056 NHPLHAQRLFGDILNDAFREMGRMFAREEAKINFLEGREKALLLPARPGM 2105 (3015)
T ss_pred CCcchHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccCCCCc
Confidence 46777778888877788873 22222 2345555555667788888875
No 279
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=22.70 E-value=2.6e+02 Score=31.14 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=40.7
Q ss_pred HHhhhcccCCCCEEEeCchh---------HHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccC
Q 004428 442 SIKLYNDFYTSDMIVASPIN---------LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRI 512 (754)
Q Consensus 442 ~lkLys~Fy~sDIIVASPlg---------Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~ 512 (754)
+-+++..-.++|+.+-+|-+ +|.++... .-.-+.+.-.|+|||+||.|-. .--..+++.|--+
T Consensus 64 sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~-----~~~~~~g~~kV~iI~~ae~m~~---~AaNaLLKtLEEP 135 (334)
T PRK07993 64 GCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL-----YEHARLGGAKVVWLPDAALLTD---AAANALLKTLEEP 135 (334)
T ss_pred HHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH-----hhccccCCceEEEEcchHhhCH---HHHHHHHHHhcCC
Confidence 33444445678888777742 33433311 1122467889999999999963 2345677788777
Q ss_pred CC
Q 004428 513 PS 514 (754)
Q Consensus 513 Pk 514 (754)
|.
T Consensus 136 p~ 137 (334)
T PRK07993 136 PE 137 (334)
T ss_pred CC
Confidence 76
No 280
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=22.67 E-value=2.4e+02 Score=31.06 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=35.9
Q ss_pred ccCCCCEEEeCchh-------HHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCC
Q 004428 448 DFYTSDMIVASPIN-------LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPS 514 (754)
Q Consensus 448 ~Fy~sDIIVASPlg-------Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk 514 (754)
...++|+++-.|-| +|.++... ...-.-+.-.|+|||+||+|-.. --..+++.|--+|.
T Consensus 68 ~~~HPD~~~i~p~~~~I~idqIR~l~~~~-----~~~p~~~~~kV~II~~ad~m~~~---AaNaLLKtLEEPp~ 133 (290)
T PRK07276 68 QGEFSDVTVIEPQGQVIKTDTIRELVKNF-----SQSGYEGKQQVFIIKDADKMHVN---AANSLLKVIEEPQS 133 (290)
T ss_pred cCCCCCeeeecCCCCcCCHHHHHHHHHHH-----hhCcccCCcEEEEeehhhhcCHH---HHHHHHHHhcCCCC
Confidence 34678888877754 33333210 01112455689999999999643 34456677777775
No 281
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=22.42 E-value=63 Score=29.01 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=30.0
Q ss_pred HHHHHhCCCceEeecCCCCHHHHH----HHHHHHhcCCccEEEEc
Q 004428 635 RNFLKSQNASFCLLGDYTEPSDIS----RARVWFFEGKRKMILYT 675 (754)
Q Consensus 635 rn~Lk~~~~~f~~Ihey~sq~~r~----rar~~F~~G~~~ILL~T 675 (754)
..+|++.|+.+..+..++...+.. .....+++|++.++|.|
T Consensus 23 a~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~ 67 (95)
T PF02142_consen 23 AKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINT 67 (95)
T ss_dssp HHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEe
Confidence 477889999987777776666444 48999999999988766
No 282
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=22.40 E-value=1.6e+02 Score=29.60 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=41.3
Q ss_pred CcEEEEec--chhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccc
Q 004428 619 GGIMLFLS--SYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHF 680 (754)
Q Consensus 619 ~~tLIFv~--Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahf 680 (754)
.+-+|||+ +..||.+|++...-.| -++|--|-.-.-=.+++.+=..|-+-+|||||-+-+
T Consensus 16 tg~~VYvNyG~~eDf~~L~~~V~v~G--kIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~ 77 (153)
T cd02131 16 QAEVVDVQYGSVEDLRRIRDNMNVTN--QIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDL 77 (153)
T ss_pred EEEEEEecCCCHHHHHHHHhCCCccc--eEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhc
Confidence 56799999 9999999986311112 233444444344445666778999999999998764
No 283
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.33 E-value=75 Score=40.10 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=11.5
Q ss_pred hhhHHHHHhhhhcCCCCcccc
Q 004428 81 VADAFKIRQRQEEGRSDSEEE 101 (754)
Q Consensus 81 ~~~~~~~r~~~~~~~~~~~~~ 101 (754)
...|.+-|...+++.+.+.++
T Consensus 874 Lp~ala~ra~~~ee~~~e~~~ 894 (1010)
T KOG1991|consen 874 LPEALAERAQVEEEDSEEGEE 894 (1010)
T ss_pred HHHHHHHHHHhhccccccccC
Confidence 446666666666655444443
No 284
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=22.27 E-value=4.2e+02 Score=23.11 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=41.1
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhC---CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQ---NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTER 677 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~---~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEr 677 (754)
...++||++|+..-...+...+... ++.+..++++....... ........|+++|-=
T Consensus 29 ~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~~ 88 (144)
T cd00046 29 KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGTPG 88 (144)
T ss_pred cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEECcH
Confidence 4589999999998887777777543 37888888877666555 223456777887765
No 285
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=21.96 E-value=2.9e+02 Score=33.34 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=45.3
Q ss_pred CHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHH--HHHHHHHHHHhhcCCccccchhhhhhhccccccccccccc
Q 004428 259 SSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIME--TYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDA 336 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~--ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~ 336 (754)
.+.|+.++-.++..+=++.+..-| ||||. +.+|.+|....+.
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpG---------TGKTt~v~~ll~~l~~~~~~--------------------------- 190 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPG---------TGKTTTVARLLLALVKQSPK--------------------------- 190 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCC---------CCHHHHHHHHHHHHHHhccc---------------------------
Confidence 368999999998877666655443 77774 3444444322110
Q ss_pred cccCCCCCceEEEEccchhHHHHHHHHHHH
Q 004428 337 FLDRGFTRPKVLILLPLKSIALNVVKRLIR 366 (754)
Q Consensus 337 ~RDQGftRPkVLIL~PTRelA~qIv~~l~~ 366 (754)
+| .++|++.+||--.|.++.+.+..
T Consensus 191 ---~~--~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 191 ---QG--KLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred ---cC--CCcEEEECCcHHHHHHHHHHHHh
Confidence 12 46899999999999998877754
No 286
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=21.87 E-value=3.2e+02 Score=30.45 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=24.5
Q ss_pred CCceeEEEEecchhhhhcCchHHHHHHHHhccCCC
Q 004428 480 LSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPS 514 (754)
Q Consensus 480 LSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk 514 (754)
.+.-.|+|||+||.|- -.-...+++.|--+|.
T Consensus 111 ~g~~kV~iI~~ae~m~---~~AaNaLLKtLEEPp~ 142 (319)
T PRK08769 111 YGIAQVVIVDPADAIN---RAACNALLKTLEEPSP 142 (319)
T ss_pred cCCcEEEEeccHhhhC---HHHHHHHHHHhhCCCC
Confidence 4556899999999995 3456677788877776
No 287
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=21.54 E-value=2.4e+02 Score=34.54 Aligned_cols=48 Identities=10% Similarity=0.246 Sum_probs=35.8
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecC--CCCHHHHHHHHHHH
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGD--YTEPSDISRARVWF 664 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihe--y~sq~~r~rar~~F 664 (754)
..+-+.|.+++......|...|.+.||++....+ .....++.-.+..+
T Consensus 343 ~~~diAVL~R~~~~~~~l~~~L~~~gIP~~~~g~~~f~~r~eikdlla~L 392 (726)
T TIGR01073 343 KYGDFAILYRTNAQSRVFEETLLKANIPYKIVGGLKFYDRKEIKDILAYL 392 (726)
T ss_pred CcCCEEEEEeCchhHHHHHHHHHHcCCCEEEeCCcccccCHHHHHHHHHH
Confidence 3567889999999999999999999999987765 23444444444444
No 288
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=21.28 E-value=1.2e+02 Score=34.00 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=21.0
Q ss_pred CceeEEEEecchhhhhcCchHHHHHHHHhccCCC
Q 004428 481 SSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPS 514 (754)
Q Consensus 481 SSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk 514 (754)
+.-.|+|||+||.|-. .-...+++.|-.+|.
T Consensus 140 g~~rVviIDeAd~l~~---~aanaLLk~LEEpp~ 170 (351)
T PRK09112 140 GNWRIVIIDPADDMNR---NAANAILKTLEEPPA 170 (351)
T ss_pred CCceEEEEEchhhcCH---HHHHHHHHHHhcCCC
Confidence 4568999999999953 233445666655554
No 289
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=21.09 E-value=29 Score=32.30 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=0.0
Q ss_pred CCCCCCcccccccCCcccCCCCcccccccccccCCCCCccccccCCCCCCCCCccccCCCchhhhcC
Q 004428 120 GEGTDSESRNCTTEGTLQQPGSIGIREQNEDADSVASDTDEEHGLGLNGQPSSEASAHASSFHEHFG 186 (754)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~d~F~~Hf~ 186 (754)
+++.|+++.++ ++++..+|..|++|++|.+++++. ....|-.|++
T Consensus 7 eg~~dse~dsd--------EdeeeededEEedDddddee~de~--------------p~p~fgea~~ 51 (101)
T PF09026_consen 7 EGEEDSESDSD--------EDEEEEDEDEEEDDDDDDEEEDEV--------------PVPEFGEAMA 51 (101)
T ss_dssp -------------------------------------------------------------HHHHHH
T ss_pred ccCcccccccc--------cchhhhhhcccccccccccccccc--------------cchhHHHHHh
No 290
>PRK07413 hypothetical protein; Validated
Probab=20.99 E-value=1.4e+02 Score=34.25 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=42.8
Q ss_pred ceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCC--CCHHHHHHHH
Q 004428 482 SIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYH--PNPEINAFFN 555 (754)
Q Consensus 482 SIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt--~~peinsL~~ 555 (754)
..++|||||+-..+..+|=....|++.|+..|. .+.++++-- .|+++..++.
T Consensus 305 ~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~----------------------~~evVLTGR~~ap~~lie~AD 358 (382)
T PRK07413 305 LYKTIILDELNPTVDLELLPVEPIVQTLLRKPR----------------------DTEVIITGRCKNQPAYFDLAS 358 (382)
T ss_pred CCCEEEEechHHHHHCCCccHHHHHHHHHhCCC----------------------CCEEEEeCCCCCCHHHHHhCc
Confidence 357999999999998888888899999988886 578888776 5778887774
No 291
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=20.97 E-value=78 Score=39.01 Aligned_cols=8 Identities=0% Similarity=0.285 Sum_probs=3.1
Q ss_pred HHHHHHhc
Q 004428 68 DNLLMKLG 75 (754)
Q Consensus 68 ~~ll~~~~ 75 (754)
++.|.++.
T Consensus 849 ~~ImKTI~ 856 (960)
T KOG1189|consen 849 TKIMKTIT 856 (960)
T ss_pred HHHhhhhc
Confidence 33343333
No 292
>PTZ00110 helicase; Provisional
Probab=20.83 E-value=3.9e+02 Score=31.71 Aligned_cols=71 Identities=6% Similarity=-0.027 Sum_probs=46.9
Q ss_pred CcEEEEecchhcHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc-----ccccccCccccCCC
Q 004428 619 GGIMLFLSSYFEFVRLRNFLKS----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT-----ERSHFYHRYKIRGI 689 (754)
Q Consensus 619 ~~tLIFv~Sy~d~vrlrn~Lk~----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T-----ErahffRr~dIkgV 689 (754)
..+||.+|+..=+..+.+.+++ .++..+.+.+..+.....+.+ .. .+.|||+| +.+. -+...++.|
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l---~~-~~~IlVaTPgrL~d~l~-~~~~~l~~v 278 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYAL---RR-GVEILIACPGRLIDFLE-SNVTNLRRV 278 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHH---Hc-CCCEEEECHHHHHHHHH-cCCCChhhC
Confidence 4689999999888888777765 357777787777665544333 33 47899999 3332 122445666
Q ss_pred CeEEE
Q 004428 690 QNLII 694 (754)
Q Consensus 690 ~~VIf 694 (754)
+.||.
T Consensus 279 ~~lVi 283 (545)
T PTZ00110 279 TYLVL 283 (545)
T ss_pred cEEEe
Confidence 66663
No 293
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.79 E-value=3.1e+02 Score=33.28 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=23.3
Q ss_pred cCCceeEEEEecchhhhhcCchHHHHHHHHhccCCC
Q 004428 479 YLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPS 514 (754)
Q Consensus 479 fLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk 514 (754)
|.+.=.++|||+||.|-...+. .+++.|..+|.
T Consensus 118 ~~~~~KVvIIdea~~Ls~~a~n---aLLK~LEepp~ 150 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQAAFN---AFLKTLEEPPS 150 (614)
T ss_pred ccCCcEEEEEECcccCCHHHHH---HHHHHHhCCCC
Confidence 6678899999999999654444 44555555665
No 294
>PRK05642 DNA replication initiation factor; Validated
Probab=20.62 E-value=66 Score=33.68 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=19.5
Q ss_pred CCceeEEEEecchhhh-hcCchH-HHHHHHH
Q 004428 480 LSSIEVLIIDHADIIL-MQNWSW-LIEVVEQ 508 (754)
Q Consensus 480 LSSIEiLVlDeAD~mL-mQNw~h-v~~Il~~ 508 (754)
+.++++||||..+.+. ...|.. +.++++.
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~ 125 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNR 125 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHH
Confidence 4466799999999885 456743 5555443
No 295
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=20.43 E-value=2e+02 Score=28.31 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=43.8
Q ss_pred cCCCCEEEeCchhH-----HHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhh
Q 004428 449 FYTSDMIVASPINL-----HQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMR 523 (754)
Q Consensus 449 Fy~sDIIVASPlgL-----r~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsR 523 (754)
...+|+++..|.+- .+-|..-...- ...-+-+...|+|||+||.|-..- ...+++.|-..|.
T Consensus 65 ~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~-~~~~~~~~~KviiI~~ad~l~~~a---~NaLLK~LEepp~--------- 131 (162)
T PF13177_consen 65 GNHPDFIIIKPDKKKKSIKIDQIREIIEFL-SLSPSEGKYKVIIIDEADKLTEEA---QNALLKTLEEPPE--------- 131 (162)
T ss_dssp T-CTTEEEEETTTSSSSBSHHHHHHHHHHC-TSS-TTSSSEEEEEETGGGS-HHH---HHHHHHHHHSTTT---------
T ss_pred ccCcceEEEecccccchhhHHHHHHHHHHH-HHHHhcCCceEEEeehHhhhhHHH---HHHHHHHhcCCCC---------
Confidence 45788888887753 22221100000 011122457799999999996432 3345556666665
Q ss_pred hhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhc
Q 004428 524 IRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCA 559 (754)
Q Consensus 524 vR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~ 559 (754)
.-.+++.++.+..|-..+..-|.
T Consensus 132 -------------~~~fiL~t~~~~~il~TI~SRc~ 154 (162)
T PF13177_consen 132 -------------NTYFILITNNPSKILPTIRSRCQ 154 (162)
T ss_dssp -------------TEEEEEEES-GGGS-HHHHTTSE
T ss_pred -------------CEEEEEEECChHHChHHHHhhce
Confidence 34566666666555544444444
Done!