Query 004428
Match_columns 754
No_of_seqs 250 out of 1161
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 00:56:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.8E-52 1.3E-56 457.9 40.2 360 222-728 48-410 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 4.1E-46 1.4E-50 400.1 36.3 383 222-735 7-392 (417)
3 3sqw_A ATP-dependent RNA helic 100.0 7.3E-45 2.5E-49 413.3 36.3 371 237-734 28-406 (579)
4 3i5x_A ATP-dependent RNA helic 100.0 1.8E-44 6.1E-49 406.1 35.9 371 237-734 79-457 (563)
5 2j0s_A ATP-dependent RNA helic 100.0 2.4E-44 8.4E-49 386.8 35.3 357 227-734 34-391 (410)
6 3eiq_A Eukaryotic initiation f 100.0 2.4E-42 8.3E-47 369.8 32.9 360 225-734 35-395 (414)
7 3fht_A ATP-dependent RNA helic 100.0 2.6E-41 9.1E-46 360.9 39.5 354 226-732 21-386 (412)
8 3fmp_B ATP-dependent RNA helic 100.0 2.5E-43 8.5E-48 389.8 20.5 350 227-727 89-447 (479)
9 3pey_A ATP-dependent RNA helic 100.0 9.7E-41 3.3E-45 353.2 39.0 354 228-736 3-370 (395)
10 1s2m_A Putative ATP-dependent 100.0 5.1E-41 1.7E-45 359.2 36.7 354 227-734 18-373 (400)
11 1xti_A Probable ATP-dependent 100.0 2.1E-40 7.1E-45 352.2 37.6 348 230-727 8-358 (391)
12 1hv8_A Putative ATP-dependent 100.0 4.3E-40 1.5E-44 344.9 36.1 347 229-734 5-353 (367)
13 1fuu_A Yeast initiation factor 100.0 3.5E-41 1.2E-45 357.9 20.2 356 225-734 16-374 (394)
14 1tf5_A Preprotein translocase 100.0 8.8E-40 3E-44 384.0 24.0 366 252-745 80-562 (844)
15 2z0m_A 337AA long hypothetical 100.0 2.7E-37 9.2E-42 320.6 33.0 328 237-734 1-330 (337)
16 3oiy_A Reverse gyrase helicase 100.0 2E-37 6.7E-42 335.6 27.5 330 253-736 19-376 (414)
17 2v1x_A ATP-dependent DNA helic 100.0 1.3E-35 4.3E-40 340.9 34.9 352 232-737 23-385 (591)
18 2fsf_A Preprotein translocase 100.0 4.2E-37 1.4E-41 360.9 22.6 361 258-746 75-601 (853)
19 3tbk_A RIG-I helicase domain; 100.0 4.8E-35 1.6E-39 323.8 30.6 348 258-729 5-510 (555)
20 4a2p_A RIG-I, retinoic acid in 100.0 6.7E-35 2.3E-39 323.8 29.2 110 616-728 388-510 (556)
21 1nkt_A Preprotein translocase 100.0 7.2E-35 2.5E-39 342.7 30.3 362 252-746 108-635 (922)
22 3fho_A ATP-dependent RNA helic 100.0 1.1E-35 3.7E-40 333.9 21.9 353 230-738 119-486 (508)
23 1oyw_A RECQ helicase, ATP-depe 100.0 4.7E-34 1.6E-38 322.8 31.8 344 230-736 2-353 (523)
24 2ykg_A Probable ATP-dependent 100.0 3.6E-33 1.2E-37 321.4 32.4 352 252-730 9-520 (696)
25 4ddu_A Reverse gyrase; topoiso 100.0 6.9E-34 2.4E-38 346.6 27.7 294 252-699 75-388 (1104)
26 1gku_B Reverse gyrase, TOP-RG; 100.0 3.5E-34 1.2E-38 347.9 22.5 312 232-698 32-352 (1054)
27 3l9o_A ATP-dependent RNA helic 100.0 1.4E-33 4.9E-38 343.9 25.0 348 230-735 162-607 (1108)
28 4a2q_A RIG-I, retinoic acid in 100.0 4.1E-32 1.4E-36 320.2 29.8 110 616-728 629-751 (797)
29 1wp9_A ATP-dependent RNA helic 100.0 3.2E-30 1.1E-34 276.6 33.1 332 258-728 10-477 (494)
30 4a2w_A RIG-I, retinoic acid in 100.0 3.1E-31 1E-35 318.7 27.3 109 617-728 630-751 (936)
31 2whx_A Serine protease/ntpase/ 100.0 2.9E-32 9.9E-37 314.7 13.1 310 235-734 155-492 (618)
32 2va8_A SSO2462, SKI2-type heli 100.0 3.7E-30 1.3E-34 299.2 30.7 338 229-727 7-409 (715)
33 4gl2_A Interferon-induced heli 100.0 2.1E-31 7.1E-36 306.9 19.0 106 618-727 400-519 (699)
34 2zj8_A DNA helicase, putative 100.0 5E-30 1.7E-34 298.8 30.5 339 230-729 1-390 (720)
35 2p6r_A Afuhel308 helicase; pro 100.0 1.9E-30 6.4E-35 301.6 24.6 342 231-730 2-392 (702)
36 2jlq_A Serine protease subunit 100.0 1E-31 3.6E-36 297.9 13.1 286 253-724 1-309 (451)
37 2xau_A PRE-mRNA-splicing facto 100.0 1.9E-29 6.5E-34 297.9 23.9 339 228-728 70-445 (773)
38 2xgj_A ATP-dependent RNA helic 100.0 1E-28 3.5E-33 298.9 30.0 325 258-735 87-509 (1010)
39 2wv9_A Flavivirin protease NS2 100.0 9.7E-32 3.3E-36 313.1 3.5 287 257-728 215-538 (673)
40 1yks_A Genome polyprotein [con 100.0 3.8E-31 1.3E-35 293.0 3.1 279 268-732 4-308 (440)
41 3fmo_B ATP-dependent RNA helic 100.0 4E-28 1.4E-32 255.9 24.1 205 227-567 89-297 (300)
42 4a4z_A Antiviral helicase SKI2 100.0 3.2E-28 1.1E-32 294.3 24.9 321 258-734 40-502 (997)
43 1wrb_A DJVLGB; RNA helicase, D 100.0 2E-28 6.9E-33 248.8 19.1 231 228-585 21-252 (253)
44 2eyq_A TRCF, transcription-rep 100.0 2.5E-27 8.6E-32 290.1 29.5 309 258-726 604-922 (1151)
45 4f92_B U5 small nuclear ribonu 100.0 4.8E-27 1.6E-31 296.4 32.0 346 253-737 923-1319(1724)
46 3o8b_A HCV NS3 protease/helica 100.0 8.4E-29 2.9E-33 287.3 14.8 273 260-727 220-515 (666)
47 3fe2_A Probable ATP-dependent 100.0 1.2E-27 4.1E-32 242.3 21.3 216 222-567 21-237 (242)
48 1gm5_A RECG; helicase, replica 100.0 5.9E-28 2E-32 285.2 19.0 329 240-735 356-709 (780)
49 2oca_A DAR protein, ATP-depend 99.9 8.6E-27 2.9E-31 259.2 25.0 318 258-724 114-453 (510)
50 2z83_A Helicase/nucleoside tri 99.9 1.3E-28 4.3E-33 274.0 9.9 275 263-726 12-313 (459)
51 3iuy_A Probable ATP-dependent 99.9 1E-26 3.6E-31 232.3 22.4 211 222-561 11-223 (228)
52 3bor_A Human initiation factor 99.9 3.8E-26 1.3E-30 230.9 22.6 206 223-561 23-229 (237)
53 1q0u_A Bstdead; DEAD protein, 99.9 3.7E-26 1.3E-30 227.4 20.0 208 229-567 3-211 (219)
54 2pl3_A Probable ATP-dependent 99.9 8.1E-26 2.8E-30 227.0 22.2 205 227-561 22-227 (236)
55 3ber_A Probable ATP-dependent 99.9 1E-25 3.5E-30 230.6 21.7 202 227-561 40-242 (249)
56 3dkp_A Probable ATP-dependent 99.9 8.2E-26 2.8E-30 228.2 20.7 215 223-567 18-240 (245)
57 2oxc_A Probable ATP-dependent 99.9 1.3E-25 4.5E-30 225.7 20.8 206 222-561 16-223 (230)
58 1vec_A ATP-dependent RNA helic 99.9 3.7E-25 1.3E-29 216.7 22.6 199 230-561 3-202 (206)
59 3h1t_A Type I site-specific re 99.9 5.8E-26 2E-30 258.1 18.8 319 258-715 179-544 (590)
60 1qde_A EIF4A, translation init 99.9 4.5E-25 1.5E-29 219.2 22.3 203 224-561 8-211 (224)
61 2gxq_A Heat resistant RNA depe 99.9 7.4E-25 2.5E-29 214.3 22.1 198 231-561 2-200 (207)
62 2fwr_A DNA repair protein RAD2 99.9 2.2E-25 7.4E-30 245.6 19.6 295 258-717 94-441 (472)
63 4f92_B U5 small nuclear ribonu 99.9 1E-24 3.5E-29 275.4 28.2 349 253-736 76-483 (1724)
64 3ly5_A ATP-dependent RNA helic 99.9 5.4E-25 1.8E-29 226.9 21.0 204 230-562 52-258 (262)
65 2v6i_A RNA helicase; membrane, 99.9 2.4E-25 8.1E-30 245.8 18.0 270 271-724 1-288 (431)
66 3rc3_A ATP-dependent RNA helic 99.9 4.5E-25 1.6E-29 257.1 19.9 288 260-733 143-451 (677)
67 1t6n_A Probable ATP-dependent 99.9 4.3E-24 1.5E-28 211.9 21.9 201 229-561 13-215 (220)
68 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 5.1E-22 1.8E-26 240.6 21.8 321 257-725 271-708 (1038)
69 3jux_A Protein translocase sub 99.9 3.4E-20 1.2E-24 215.2 34.6 123 617-745 473-604 (822)
70 3dmq_A RNA polymerase-associat 99.9 1.4E-21 4.9E-26 235.8 22.0 110 616-727 501-616 (968)
71 1z63_A Helicase of the SNF2/RA 99.9 6.4E-20 2.2E-24 203.5 29.8 108 617-726 340-453 (500)
72 2hjv_A ATP-dependent RNA helic 99.8 2E-20 6.7E-25 179.5 17.2 144 578-734 6-150 (163)
73 2rb4_A ATP-dependent RNA helic 99.8 3E-20 1E-24 180.0 16.1 143 579-733 5-154 (175)
74 2p6n_A ATP-dependent RNA helic 99.8 1.6E-20 5.3E-25 186.2 14.0 156 556-731 10-167 (191)
75 1fuk_A Eukaryotic initiation f 99.8 6.7E-20 2.3E-24 175.9 17.6 142 580-733 2-144 (165)
76 1t5i_A C_terminal domain of A 99.8 4.8E-20 1.6E-24 179.0 14.4 146 579-737 3-153 (172)
77 2d7d_A Uvrabc system protein B 99.8 4.5E-20 1.5E-24 214.6 14.3 117 617-735 444-565 (661)
78 3eaq_A Heat resistant RNA depe 99.8 1.9E-19 6.5E-24 180.6 14.3 120 615-736 28-151 (212)
79 2jgn_A DBX, DDX3, ATP-dependen 99.8 1.4E-19 4.8E-24 178.1 12.4 143 578-732 16-159 (185)
80 3i32_A Heat resistant RNA depe 99.8 5.3E-19 1.8E-23 187.6 16.1 144 581-737 2-149 (300)
81 1c4o_A DNA nucleotide excision 99.8 6.7E-19 2.3E-23 204.9 16.9 120 617-738 438-562 (664)
82 1z3i_X Similar to RAD54-like; 99.8 2.3E-16 7.8E-21 182.7 31.3 116 609-726 407-528 (644)
83 2yjt_D ATP-dependent RNA helic 99.6 7.9E-20 2.7E-24 176.4 0.0 147 581-739 3-153 (170)
84 3mwy_W Chromo domain-containin 99.7 1.9E-15 6.5E-20 178.9 32.8 108 617-726 571-684 (800)
85 3llm_A ATP-dependent RNA helic 99.7 6.3E-17 2.2E-21 163.6 15.4 166 258-561 62-230 (235)
86 2ipc_A Preprotein translocase 99.7 1.3E-14 4.3E-19 171.6 32.8 136 252-495 76-215 (997)
87 2vl7_A XPD; helicase, unknown 99.6 1.4E-14 4.7E-19 164.6 22.6 84 611-702 377-466 (540)
88 3b6e_A Interferon-induced heli 99.6 4.7E-15 1.6E-19 144.8 12.5 150 258-504 34-185 (216)
89 3crv_A XPD/RAD3 related DNA he 99.5 1.1E-12 3.6E-17 149.2 26.1 83 613-701 388-475 (551)
90 1rif_A DAR protein, DNA helica 99.5 2.2E-13 7.5E-18 140.9 15.2 152 258-549 114-265 (282)
91 1z5z_A Helicase of the SNF2/RA 99.4 1.2E-12 4.1E-17 136.7 15.3 123 600-726 96-224 (271)
92 4a15_A XPD helicase, ATP-depen 99.2 6.2E-10 2.1E-14 128.7 21.2 84 613-700 443-528 (620)
93 2fz4_A DNA repair protein RAD2 99.1 2.6E-10 8.8E-15 116.2 10.6 137 258-548 94-230 (237)
94 1w36_D RECD, exodeoxyribonucle 97.8 5E-05 1.7E-09 87.6 10.2 67 259-367 151-219 (608)
95 1gm5_A RECG; helicase, replica 82.5 2.5 8.5E-05 50.3 8.4 76 618-694 417-496 (780)
96 4b3f_X DNA-binding protein smu 80.4 3.4 0.00012 47.5 8.4 66 259-368 191-257 (646)
97 3oiy_A Reverse gyrase helicase 79.6 6.6 0.00022 41.7 9.8 78 617-694 63-145 (414)
98 3hgt_A HDA1 complex subunit 3; 77.5 16 0.00056 39.1 11.9 127 600-735 109-246 (328)
99 4ddu_A Reverse gyrase; topoiso 75.3 6.3 0.00021 48.7 9.0 80 617-696 120-204 (1104)
100 3lfu_A DNA helicase II; SF1 he 75.1 5.6 0.00019 45.1 8.1 33 618-650 347-379 (647)
101 2eyq_A TRCF, transcription-rep 74.6 4.3 0.00015 50.3 7.4 76 618-694 652-731 (1151)
102 2gk6_A Regulator of nonsense t 72.4 8 0.00027 44.4 8.5 67 258-367 181-247 (624)
103 1c4o_A DNA nucleotide excision 70.7 5.9 0.0002 46.1 6.9 25 347-371 56-80 (664)
104 1oyw_A RECQ helicase, ATP-depe 69.7 11 0.00038 42.2 8.8 65 609-675 58-122 (523)
105 3ber_A Probable ATP-dependent 68.7 23 0.00079 35.2 10.1 73 618-694 111-192 (249)
106 1uaa_A REP helicase, protein ( 65.4 13 0.00044 42.8 8.3 70 258-369 3-72 (673)
107 2xzl_A ATP-dependent helicase 65.4 11 0.00039 44.8 8.0 68 258-368 361-428 (802)
108 1t6n_A Probable ATP-dependent 63.6 31 0.0011 33.0 9.5 74 618-694 82-164 (220)
109 2wjy_A Regulator of nonsense t 63.3 15 0.00051 43.8 8.6 67 258-367 357-423 (800)
110 2v1x_A ATP-dependent DNA helic 63.2 15 0.00052 42.0 8.3 66 609-676 77-144 (591)
111 2rb4_A ATP-dependent RNA helic 62.8 22 0.00076 33.2 8.1 24 344-367 34-57 (175)
112 3u4q_A ATP-dependent helicase/ 61.6 14 0.00048 46.0 8.2 69 258-366 11-79 (1232)
113 2p6n_A ATP-dependent RNA helic 61.5 20 0.0007 34.5 7.8 23 345-367 55-77 (191)
114 3upu_A ATP-dependent DNA helic 59.7 18 0.00063 39.5 7.9 68 253-364 22-94 (459)
115 3fe2_A Probable ATP-dependent 59.5 43 0.0015 32.8 9.9 72 618-694 102-182 (242)
116 1pjr_A PCRA; DNA repair, DNA r 58.6 20 0.00069 41.8 8.4 33 618-650 351-383 (724)
117 3iuy_A Probable ATP-dependent 57.7 29 0.00099 33.5 8.2 74 617-694 93-173 (228)
118 2pl3_A Probable ATP-dependent 56.8 37 0.0013 32.9 8.8 73 617-694 96-177 (236)
119 2hjv_A ATP-dependent RNA helic 55.4 28 0.00095 32.2 7.3 23 345-367 36-58 (163)
120 1fuk_A Eukaryotic initiation f 52.7 29 0.001 32.0 7.0 23 345-367 31-53 (165)
121 2gxq_A Heat resistant RNA depe 50.4 56 0.0019 30.6 8.7 74 617-694 71-150 (207)
122 3e1s_A Exodeoxyribonuclease V, 50.2 36 0.0012 38.8 8.5 63 258-364 190-252 (574)
123 1xti_A Probable ATP-dependent 49.9 59 0.002 33.5 9.5 74 618-694 76-158 (391)
124 1t5i_A C_terminal domain of A 49.3 40 0.0014 31.6 7.4 23 345-367 32-54 (172)
125 3ly5_A ATP-dependent RNA helic 48.9 89 0.0031 31.1 10.4 74 617-694 125-207 (262)
126 3bor_A Human initiation factor 48.7 40 0.0014 33.0 7.6 75 617-694 97-179 (237)
127 2lnd_A De novo designed protei 47.4 96 0.0033 26.9 8.6 94 539-665 4-100 (112)
128 1fuu_A Yeast initiation factor 46.8 68 0.0023 33.0 9.4 73 617-694 88-168 (394)
129 1vec_A ATP-dependent RNA helic 45.6 84 0.0029 29.4 9.1 73 618-694 71-152 (206)
130 2jgn_A DBX, DDX3, ATP-dependen 43.2 32 0.0011 32.7 5.8 24 344-367 46-69 (185)
131 3eaq_A Heat resistant RNA depe 42.6 42 0.0014 32.6 6.6 22 346-367 33-54 (212)
132 2i4i_A ATP-dependent RNA helic 41.4 1.2E+02 0.0041 31.5 10.3 72 619-694 102-181 (417)
133 1qde_A EIF4A, translation init 40.6 41 0.0014 32.1 6.1 73 617-694 81-161 (224)
134 1hv8_A Putative ATP-dependent 39.7 1.2E+02 0.0041 30.6 9.8 73 617-694 73-153 (367)
135 2o0j_A Terminase, DNA packagin 38.8 76 0.0026 34.5 8.5 69 258-368 164-232 (385)
136 3cpe_A Terminase, DNA packagin 36.9 79 0.0027 35.9 8.6 69 258-368 164-232 (592)
137 2oxc_A Probable ATP-dependent 36.4 83 0.0028 30.4 7.6 73 617-694 91-172 (230)
138 3i32_A Heat resistant RNA depe 35.7 65 0.0022 33.5 7.1 23 345-367 29-51 (300)
139 1gku_B Reverse gyrase, TOP-RG; 35.1 79 0.0027 38.7 8.7 74 617-694 98-181 (1054)
140 3fht_A ATP-dependent RNA helic 35.1 93 0.0032 32.2 8.2 23 345-367 267-289 (412)
141 3pey_A ATP-dependent RNA helic 34.9 93 0.0032 31.8 8.1 24 344-367 243-266 (395)
142 1t1v_A SH3BGRL3, SH3 domain-bi 34.6 75 0.0026 26.5 6.2 59 619-677 2-69 (93)
143 1wp9_A ATP-dependent RNA helic 34.3 1.3E+02 0.0044 31.3 9.2 54 617-675 51-108 (494)
144 3tbk_A RIG-I helicase domain; 33.9 52 0.0018 35.6 6.3 54 618-675 52-109 (555)
145 1wrb_A DJVLGB; RNA helicase, D 33.1 1.3E+02 0.0043 29.4 8.4 72 619-694 101-180 (253)
146 2d7d_A Uvrabc system protein B 32.5 68 0.0023 37.1 7.2 25 347-371 60-84 (661)
147 3ipz_A Monothiol glutaredoxin- 32.5 1E+02 0.0035 26.8 6.8 61 617-677 16-82 (109)
148 1s2m_A Putative ATP-dependent 32.2 1.6E+02 0.0056 30.3 9.5 74 617-694 88-169 (400)
149 3eiq_A Eukaryotic initiation f 32.0 1.4E+02 0.0048 30.9 9.0 75 617-694 107-189 (414)
150 3zyw_A Glutaredoxin-3; metal b 31.3 1.1E+02 0.0038 26.8 6.9 60 617-677 14-80 (111)
151 2yan_A Glutaredoxin-3; oxidore 31.1 98 0.0033 26.4 6.4 57 618-674 16-78 (105)
152 2khp_A Glutaredoxin; thioredox 30.7 1.8E+02 0.0062 23.5 7.8 56 618-673 5-61 (92)
153 4a2p_A RIG-I, retinoic acid in 29.7 77 0.0026 34.4 6.7 73 618-694 55-136 (556)
154 3fmo_B ATP-dependent RNA helic 29.5 85 0.0029 32.2 6.7 70 618-694 162-241 (300)
155 4a2q_A RIG-I, retinoic acid in 28.7 91 0.0031 36.5 7.5 54 618-675 296-353 (797)
156 1g5t_A COB(I)alamin adenosyltr 27.7 61 0.0021 32.1 4.9 52 481-554 119-171 (196)
157 1a5t_A Delta prime, HOLB; zinc 27.0 1.3E+02 0.0046 31.1 7.7 33 479-514 105-137 (334)
158 1q0u_A Bstdead; DEAD protein, 26.8 62 0.0021 30.9 4.8 73 618-694 72-156 (219)
159 2j32_A Caspase-3; Pro-caspase3 26.7 1.2E+02 0.0041 30.8 7.1 48 619-667 17-78 (250)
160 2lqo_A Putative glutaredoxin R 25.1 2.1E+02 0.0073 24.4 7.4 55 619-674 4-61 (92)
161 1wik_A Thioredoxin-like protei 24.9 2E+02 0.0069 24.6 7.4 57 618-674 14-76 (109)
162 2j0s_A ATP-dependent RNA helic 24.1 2.4E+02 0.0084 29.1 9.2 73 617-694 104-185 (410)
163 2gno_A DNA polymerase III, gam 24.1 98 0.0034 32.2 6.0 33 479-514 79-111 (305)
164 2db3_A ATP-dependent RNA helic 22.7 2E+02 0.0069 30.7 8.4 73 618-694 129-209 (434)
165 2wci_A Glutaredoxin-4; redox-a 22.5 1.6E+02 0.0054 27.1 6.5 60 618-677 34-99 (135)
166 1u6t_A SH3 domain-binding glut 21.1 1.5E+02 0.0052 27.1 5.9 37 628-664 16-52 (121)
167 3dkp_A Probable ATP-dependent 21.0 77 0.0026 30.8 4.2 74 618-694 98-181 (245)
168 2wem_A Glutaredoxin-related pr 20.0 2.8E+02 0.0094 24.7 7.4 59 618-677 19-85 (118)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.8e-52 Score=457.91 Aligned_cols=360 Identities=17% Similarity=0.224 Sum_probs=289.8
Q ss_pred CcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHH
Q 004428 222 GECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMH 301 (754)
Q Consensus 222 ~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh 301 (754)
+.++|.++.+|.+++|++.|++++.++ |+.. |||+|++++|.+++++|++++++|| +|||.+|++|
T Consensus 48 ~~~~p~~~~~f~~~~l~~~l~~~l~~~----g~~~-pt~iQ~~ai~~i~~g~d~i~~a~TG---------sGKT~a~~lp 113 (434)
T 2db3_A 48 GSDVPQPIQHFTSADLRDIIIDNVNKS----GYKI-PTPIQKCSIPVISSGRDLMACAQTG---------SGKTAAFLLP 113 (434)
T ss_dssp SSSCCCCCCCGGGSCCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SSHHHHHHHH
T ss_pred CCCCCCCcCChhhcCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhcCCCEEEECCCC---------CCchHHHHHH
Confidence 456778889999999999999999874 8876 9999999999999999999999998 8999999999
Q ss_pred HHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccc
Q 004428 302 SLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDR 381 (754)
Q Consensus 302 ~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~R 381 (754)
+|+|+++.... .....|++|||+|||+||.|+.+.+.+++.... .+
T Consensus 114 il~~l~~~~~~---------------------------~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~-------~~ 159 (434)
T 2db3_A 114 ILSKLLEDPHE---------------------------LELGRPQVVIVSPTRELAIQIFNEARKFAFESY-------LK 159 (434)
T ss_dssp HHHHHHHSCCC---------------------------CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSS-------CC
T ss_pred HHHHHHhcccc---------------------------cccCCccEEEEecCHHHHHHHHHHHHHHhccCC-------cE
Confidence 99999865320 112368999999999999999999999875432 12
Q ss_pred cccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchh
Q 004428 382 FCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPIN 461 (754)
Q Consensus 382 f~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlg 461 (754)
....+|+. .... +.+... .+++||||||++
T Consensus 160 ~~~~~gg~-----------------------------------------------~~~~-~~~~l~--~~~~Ivv~Tp~~ 189 (434)
T 2db3_A 160 IGIVYGGT-----------------------------------------------SFRH-QNECIT--RGCHVVIATPGR 189 (434)
T ss_dssp CCEECTTS-----------------------------------------------CHHH-HHHHHT--TCCSEEEECHHH
T ss_pred EEEEECCC-----------------------------------------------CHHH-HHHHhh--cCCCEEEEChHH
Confidence 22334432 1111 111111 479999999999
Q ss_pred HHHHHhhhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEE
Q 004428 462 LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTV 540 (754)
Q Consensus 462 Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTl 540 (754)
|.+++.. ....|+.+.+|||||||+|+ |++...+..|+.++...| .||+|
T Consensus 190 l~~~l~~-------~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~----------------------~~q~l 240 (434)
T 2db3_A 190 LLDFVDR-------TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRP----------------------EHQTL 240 (434)
T ss_dssp HHHHHHT-------TSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCS----------------------SCEEE
T ss_pred HHHHHHh-------CCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCC----------------------CceEE
Confidence 9999873 34568999999999999999 555567777777654322 38999
Q ss_pred EEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCc
Q 004428 541 LLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGG 620 (754)
Q Consensus 541 lFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~ 620 (754)
+||||+++++..++..++.++. .+.+. ........+.|.+..+... .+.. .++..+.. ...+
T Consensus 241 ~~SAT~~~~~~~~~~~~l~~~~-~i~~~-----~~~~~~~~i~~~~~~~~~~-------~k~~----~l~~~l~~-~~~~ 302 (434)
T 2db3_A 241 MFSATFPEEIQRMAGEFLKNYV-FVAIG-----IVGGACSDVKQTIYEVNKY-------AKRS----KLIEILSE-QADG 302 (434)
T ss_dssp EEESCCCHHHHHHHHTTCSSCE-EEEES-----STTCCCTTEEEEEEECCGG-------GHHH----HHHHHHHH-CCTT
T ss_pred EEeccCCHHHHHHHHHhccCCE-EEEec-----cccccccccceEEEEeCcH-------HHHH----HHHHHHHh-CCCC
Confidence 9999999999999999988752 33332 1223456789988876532 2332 22222332 3345
Q ss_pred EEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCC
Q 004428 621 IMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPER 700 (754)
Q Consensus 621 tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~ 700 (754)
+||||++...+..|..+|++.++.+..+|+.++|.+|.+++..|++|+.+|||+|++++ ||+||++|++||||++|.+
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~--rGlDi~~v~~VI~~d~p~~ 380 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVAS--RGLDIKNIKHVINYDMPSK 380 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGT--SSCCCTTCCEEEESSCCSS
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhh--CCCCcccCCEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCchhhhccccCCCC-CceEEEEechh-cH
Q 004428 701 KEFYPEIVNMLEGSH-NMTCTVLFSRF-DM 728 (754)
Q Consensus 701 pefY~erigrt~ra~-~g~~~~L~sk~-D~ 728 (754)
++.|.||+||+||.+ .|.|++||++. |.
T Consensus 381 ~~~y~qriGR~gR~g~~G~a~~~~~~~~~~ 410 (434)
T 2db3_A 381 IDDYVHRIGRTGRVGNNGRATSFFDPEKDR 410 (434)
T ss_dssp HHHHHHHHTTSSCTTCCEEEEEEECTTTCG
T ss_pred HHHHHHHhcccccCCCCCEEEEEEeccccH
Confidence 999999999999997 79999999944 43
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.1e-46 Score=400.08 Aligned_cols=383 Identities=16% Similarity=0.183 Sum_probs=288.2
Q ss_pred CcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHH
Q 004428 222 GECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMH 301 (754)
Q Consensus 222 ~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh 301 (754)
+..+|+++.+|++++|++.|.++|..+ |+.. |||+|++++|.+++++|++++++|| +|||.+|++|
T Consensus 7 ~~~~p~~~~~f~~~~l~~~l~~~l~~~----~~~~-~~~~Q~~~i~~i~~~~~~lv~a~TG---------sGKT~~~~~~ 72 (417)
T 2i4i_A 7 GNNCPPHIESFSDVEMGEIIMGNIELT----RYTR-PTPVQKHAIPIIKEKRDLMACAQTG---------SGKTAAFLLP 72 (417)
T ss_dssp STTCCCCCSSGGGSCCCHHHHHHHHHH----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SCHHHHHHHH
T ss_pred CCcCCcccCCHhhCCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHccCCCEEEEcCCC---------CHHHHHHHHH
Confidence 456788889999999999999999886 7876 8999999999999999999999998 8999999999
Q ss_pred HHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccc
Q 004428 302 SLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDR 381 (754)
Q Consensus 302 ~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~R 381 (754)
+|++++..... ..+....+.. .+. ..-..|++|||+|||+||.|+.+.+.+++.... .+
T Consensus 73 ~l~~~~~~~~~-----~~~~~~~~~~--------~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-------~~ 131 (417)
T 2i4i_A 73 ILSQIYSDGPG-----EALRAMKENG--------RYG-RRKQYPISLVLAPTRELAVQIYEEARKFSYRSR-------VR 131 (417)
T ss_dssp HHHHHHHHCCC-----HHHHHHHHCB--------TTB-SCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSS-------CC
T ss_pred HHHHHHhcccc-----chhhcccccc--------ccc-cccCCccEEEECCcHHHHHHHHHHHHHHhCcCC-------ce
Confidence 99999865321 0010000000 000 001248999999999999999999999864321 11
Q ss_pred cccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchh
Q 004428 382 FCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPIN 461 (754)
Q Consensus 382 f~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlg 461 (754)
....+|+. .... .++-+. .+++||||||++
T Consensus 132 ~~~~~g~~-----------------------------------------------~~~~-~~~~~~--~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 132 PCVVYGGA-----------------------------------------------DIGQ-QIRDLE--RGCHLLVATPGR 161 (417)
T ss_dssp EEEECSSS-----------------------------------------------CHHH-HHHHHT--TCCSEEEECHHH
T ss_pred EEEEECCC-----------------------------------------------CHHH-HHHHhh--CCCCEEEEChHH
Confidence 12222322 1111 111111 468999999999
Q ss_pred HHHHHhhhhcccccCcccCCceeEEEEecchhhhhcC-chHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEE
Q 004428 462 LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQN-WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTV 540 (754)
Q Consensus 462 Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQN-w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTl 540 (754)
|..++.. ....++.+.++||||||.|+..+ +..+..++..+...+. ..+|++
T Consensus 162 l~~~l~~-------~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~--------------------~~~~~i 214 (417)
T 2i4i_A 162 LVDMMER-------GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPK--------------------GVRHTM 214 (417)
T ss_dssp HHHHHHT-------TSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCB--------------------TTBEEE
T ss_pred HHHHHHc-------CCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCc--------------------CCcEEE
Confidence 9998873 23458999999999999999544 4566666554332221 248999
Q ss_pred EEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhc-CCC
Q 004428 541 LLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDS-IQG 619 (754)
Q Consensus 541 lFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~-~~~ 619 (754)
+||||+++.+..++..++.++ ..+.+... ......+.|.+..++.. .+..+ ++..+... ...
T Consensus 215 ~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~i~~~~~~~~~~-------~~~~~----l~~~l~~~~~~~ 277 (417)
T 2i4i_A 215 MFSATFPKEIQMLARDFLDEY-IFLAVGRV-----GSTSENITQKVVWVEES-------DKRSF----LLDLLNATGKDS 277 (417)
T ss_dssp EEESCCCHHHHHHHHHHCSSC-EEEEEC---------CCSSEEEEEEECCGG-------GHHHH----HHHHHHTCCTTC
T ss_pred EEEEeCCHHHHHHHHHHcCCC-EEEEeCCC-----CCCccCceEEEEEeccH-------hHHHH----HHHHHHhcCCCC
Confidence 999999999999999888875 23333211 23456788888776532 23322 22222222 457
Q ss_pred cEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC
Q 004428 620 GIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE 699 (754)
Q Consensus 620 ~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~ 699 (754)
++||||++...+..|..+|++.++.+..+|+.+++.+|.++...|++|+.+|||+|+.+. +|+||++|++||+|++|.
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~--~Gidip~v~~Vi~~~~p~ 355 (417)
T 2i4i_A 278 LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAA--RGLDISNVKHVINFDLPS 355 (417)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHH--TTSCCCCEEEEEESSCCS
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhh--cCCCcccCCEEEEEcCCC
Confidence 899999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCchhhhccccCCCC-CceEEEEechhcHHHHHHHh
Q 004428 700 RKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIV 735 (754)
Q Consensus 700 ~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIV 735 (754)
++..|.||+||+||.+ .|.|++||++.|...+.+++
T Consensus 356 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 392 (417)
T 2i4i_A 356 DIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 392 (417)
T ss_dssp SHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHH
T ss_pred CHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHH
Confidence 9999999999999987 69999999999876655554
No 3
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=7.3e-45 Score=413.27 Aligned_cols=371 Identities=14% Similarity=0.136 Sum_probs=284.4
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhh--CCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccc
Q 004428 237 LKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCN--SYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVT 314 (754)
Q Consensus 237 L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~--~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~ 314 (754)
|++.|++++.++ |+.. |||+|+++||.++ .++|++++++|| +|||.+|+||+++++.+.+.
T Consensus 28 l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~il~~~~~dvlv~apTG---------sGKTl~~~lpil~~l~~~~~--- 90 (579)
T 3sqw_A 28 LDKEIHKAITRM----EFPG-LTPVQQKTIKPILSSEDHDVIARAKTG---------TGKTFAFLIPIFQHLINTKF--- 90 (579)
T ss_dssp SCHHHHHHHHTT----TCSS-CCHHHHHHHHHHHCSSSEEEEEECCTT---------SCHHHHHHHHHHHHHHHTTT---
T ss_pred CCHHHHHHHHHC----CCCC-CCHHHHHHHHHHHccCCCeEEEEcCCC---------cHHHHHHHHHHHHHHHhccc---
Confidence 899999998774 8876 8999999999999 789999999998 89999999999999987632
Q ss_pred cchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccC
Q 004428 315 KNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEED 394 (754)
Q Consensus 315 knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~ 394 (754)
.+-..|+||||+|||+||.|+.+.+.++....... ...+.
T Consensus 91 -------------------------~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~---~~~~~------------ 130 (579)
T 3sqw_A 91 -------------------------DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGL---KKYAC------------ 130 (579)
T ss_dssp -------------------------SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGG---TTSCE------------
T ss_pred -------------------------cccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccc---cceEE------------
Confidence 11235899999999999999999999985321100 00111
Q ss_pred cccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccc
Q 004428 395 KDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKE 474 (754)
Q Consensus 395 ~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~ 474 (754)
..+++| ..+....-++.. .+++||||||++|.+++...
T Consensus 131 --------------------------~~~~gg---------~~~~~~~~~l~~--~~~~IlV~Tp~~l~~~l~~~----- 168 (579)
T 3sqw_A 131 --------------------------VSLVGG---------TDFRAAMNKMNK--LRPNIVIATPGRLIDVLEKY----- 168 (579)
T ss_dssp --------------------------EEECTT---------SCHHHHHHHHHH--HCCSEEEECHHHHHHHHHHH-----
T ss_pred --------------------------EEEECC---------ccHHHHHHHHhc--CCCCEEEECHHHHHHHHHhc-----
Confidence 222232 111211111211 36899999999999998731
Q ss_pred cCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHH
Q 004428 475 QDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAF 553 (754)
Q Consensus 475 rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL 553 (754)
...+++.+.+|||||||.|+ |+++.++..|+..+...+.. ....+|+|+||||+++.+..+
T Consensus 169 -~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~-----------------~~~~~~~l~~SAT~~~~v~~~ 230 (579)
T 3sqw_A 169 -SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK-----------------SADNIKTLLFSATLDDKVQKL 230 (579)
T ss_dssp -HHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-----------------CTTCCEEEEEESSCCTHHHHH
T ss_pred -cccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcc-----------------cccCceEEEEeccCChHHHHH
Confidence 23468999999999999998 66677888888887554331 112379999999999999999
Q ss_pred HHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecchhcHH
Q 004428 554 FNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSSYFEFV 632 (754)
Q Consensus 554 ~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~Sy~d~v 632 (754)
+..++.++ ..+.+..... ........+.|.+...+.. ..++...+..++..+.. ....++||||++...+.
T Consensus 231 ~~~~l~~~-~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~ 302 (579)
T 3sqw_A 231 ANNIMNKK-ECLFLDTVDK-NEPEAHERIDQSVVISEKF------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTS 302 (579)
T ss_dssp TTTTCCSS-EEEEEESSCS-SSCSSCTTEEEEEEEESST------THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHH
T ss_pred HHHHcCCC-ceEEEeecCc-cccccccccceEEEEecch------hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHH
Confidence 98888774 3444432211 1112345677777765432 11222223334444443 34679999999999999
Q ss_pred HHHHHHHhC---CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhcc
Q 004428 633 RLRNFLKSQ---NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVN 709 (754)
Q Consensus 633 rlrn~Lk~~---~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erig 709 (754)
.|...|++. ++.+..+|+.+++.+|.+++..|++|+.+|||||++++ ||+||++|++||+|++|.+++.|.||+|
T Consensus 303 ~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~--~GiDip~v~~VI~~~~p~s~~~y~Qr~G 380 (579)
T 3sqw_A 303 FLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGA--RGMDFPNVHEVLQIGVPSELANYIHRIG 380 (579)
T ss_dssp HHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGT--SSCCCTTCCEEEEESCCSSTTHHHHHHT
T ss_pred HHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhh--cCCCcccCCEEEEcCCCCCHHHhhhhcc
Confidence 999999986 99999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ccCCCC-CceEEEEechhcHHHHHHH
Q 004428 710 MLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 710 rt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
|+||++ .|.|++++++.|...++.|
T Consensus 381 RagR~g~~g~~i~~~~~~e~~~~~~l 406 (579)
T 3sqw_A 381 RTARSGKEGSSVLFICKDELPFVREL 406 (579)
T ss_dssp TSSCTTCCEEEEEEEEGGGHHHHHHH
T ss_pred ccccCCCCceEEEEEcccHHHHHHHH
Confidence 999998 7999999999998777655
No 4
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.8e-44 Score=406.07 Aligned_cols=371 Identities=14% Similarity=0.136 Sum_probs=282.2
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhh--CCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccc
Q 004428 237 LKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCN--SYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVT 314 (754)
Q Consensus 237 L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~--~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~ 314 (754)
|++.+++++.+. |+.. |||+|+++||.++ .++|++++++|| +|||.+|++|+++++.+.+.
T Consensus 79 l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~l~~~~~~~lv~apTG---------sGKTl~~~lpil~~l~~~~~--- 141 (563)
T 3i5x_A 79 LDKEIHKAITRM----EFPG-LTPVQQKTIKPILSSEDHDVIARAKTG---------TGKTFAFLIPIFQHLINTKF--- 141 (563)
T ss_dssp SCHHHHHHHHTT----CCSS-CCHHHHHHHHHHHSSSSEEEEEECCTT---------SCHHHHHHHHHHHHHHHTTT---
T ss_pred CCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhcCCCCeEEEECCCC---------CCccHHHHHHHHHHHHhccc---
Confidence 889999998764 8876 8999999999998 789999999998 89999999999999987532
Q ss_pred cchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccC
Q 004428 315 KNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEED 394 (754)
Q Consensus 315 knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~ 394 (754)
.+-..++||||+|||+||.|+++.+.++......+ ...+.
T Consensus 142 -------------------------~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~---~~~~~------------ 181 (563)
T 3i5x_A 142 -------------------------DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGL---KKYAC------------ 181 (563)
T ss_dssp -------------------------SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGG---TTSCE------------
T ss_pred -------------------------cccCCeeEEEEcCcHHHHHHHHHHHHHHHhhcccc---CceeE------------
Confidence 01135799999999999999999999974321100 00111
Q ss_pred cccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccc
Q 004428 395 KDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKE 474 (754)
Q Consensus 395 ~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~ 474 (754)
..+.+| .......-++.. .++|||||||++|.+++...
T Consensus 182 --------------------------~~~~g~---------~~~~~~~~~~~~--~~~~Iiv~Tp~~l~~~l~~~----- 219 (563)
T 3i5x_A 182 --------------------------VSLVGG---------TDFRAAMNKMNK--LRPNIVIATPGRLIDVLEKY----- 219 (563)
T ss_dssp --------------------------EEECTT---------SCHHHHHHHHHH--HCCSEEEECHHHHHHHHHHH-----
T ss_pred --------------------------EEEECC---------cCHHHHHHHHhc--CCCCEEEECcHHHHHHHHhc-----
Confidence 222222 111111111211 36899999999999998731
Q ss_pred cCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHH
Q 004428 475 QDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAF 553 (754)
Q Consensus 475 rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL 553 (754)
...+++.+.+|||||||.|+ +++...+..|+..+...+.. ....+|+|+||||+++.+..+
T Consensus 220 -~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~-----------------~~~~~~~l~~SAT~~~~v~~~ 281 (563)
T 3i5x_A 220 -SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK-----------------SADNIKTLLFSATLDDKVQKL 281 (563)
T ss_dssp -HHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-----------------CTTCCEEEEEESSCCTHHHHH
T ss_pred -cccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhcccc-----------------CccCceEEEEEccCCHHHHHH
Confidence 13468999999999999998 55567788888777544321 112379999999999999999
Q ss_pred HHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecchhcHH
Q 004428 554 FNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSSYFEFV 632 (754)
Q Consensus 554 ~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~Sy~d~v 632 (754)
+..++.++ ..+.+..... ........+.|.+...+.. ..++...+..++..+.. ....++||||+|+..+.
T Consensus 282 ~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~ 353 (563)
T 3i5x_A 282 ANNIMNKK-ECLFLDTVDK-NEPEAHERIDQSVVISEKF------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTS 353 (563)
T ss_dssp TTTTCCSS-EEEEEESSCS-SSCSSCTTEEEEEEEESST------THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHH
T ss_pred HHHhcCCC-ceEEEeccCC-CCccccccCceEEEECchh------HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHH
Confidence 98888774 3444432211 1112345677777765432 11222233334444433 45679999999999999
Q ss_pred HHHHHHHhC---CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhcc
Q 004428 633 RLRNFLKSQ---NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVN 709 (754)
Q Consensus 633 rlrn~Lk~~---~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erig 709 (754)
.|..+|++. ++.+..+|+.+++.+|.++...|++|+++|||||++++ ||+||++|++||+|++|.++..|.||+|
T Consensus 354 ~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~--~GiDip~v~~VI~~~~p~s~~~y~Qr~G 431 (563)
T 3i5x_A 354 FLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGA--RGMDFPNVHEVLQIGVPSELANYIHRIG 431 (563)
T ss_dssp HHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGT--SSCCCTTCCEEEEESCCSSTTHHHHHHT
T ss_pred HHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhh--cCCCcccCCEEEEECCCCchhhhhhhcC
Confidence 999999986 99999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ccCCCC-CceEEEEechhcHHHHHHH
Q 004428 710 MLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 710 rt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
|+||.+ .|.|++|+++.|...++++
T Consensus 432 RagR~g~~g~~i~~~~~~e~~~~~~l 457 (563)
T 3i5x_A 432 RTARSGKEGSSVLFICKDELPFVREL 457 (563)
T ss_dssp TSSCTTCCEEEEEEEEGGGHHHHHHH
T ss_pred ccccCCCCceEEEEEchhHHHHHHHH
Confidence 999998 6899999999997666555
No 5
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.4e-44 Score=386.79 Aligned_cols=357 Identities=15% Similarity=0.215 Sum_probs=280.3
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHH
Q 004428 227 KDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHI 306 (754)
Q Consensus 227 ~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv 306 (754)
+...+|.+++|++.|+++|.+. |+.. |+|+|++++|.+++++|++.+++|| +|||.+|++++++++
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~ai~~i~~~~~~lv~a~TG---------sGKT~~~~~~~~~~l 99 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAY----GFEK-PSAIQQRAIKQIIKGRDVIAQSQSG---------TGKTATFSISVLQCL 99 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHH----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SSHHHHHHHHHHHTC
T ss_pred cCCCCHhhcCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------CCchHHHHHHHHHHH
Confidence 4467899999999999999885 7876 8999999999999999999999998 899999999999987
Q ss_pred hhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccccc
Q 004428 307 FRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEF 386 (754)
Q Consensus 307 ~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ef 386 (754)
... ...+++|||+|||+||.|+.+.+.+++.... .+....+
T Consensus 100 ~~~--------------------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-------~~~~~~~ 140 (410)
T 2j0s_A 100 DIQ--------------------------------VRETQALILAPTRELAVQIQKGLLALGDYMN-------VQCHACI 140 (410)
T ss_dssp CTT--------------------------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTTT-------CCEEEEC
T ss_pred hhc--------------------------------cCCceEEEEcCcHHHHHHHHHHHHHHhccCC-------eEEEEEE
Confidence 421 1247899999999999999999999875432 1111222
Q ss_pred CCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHH
Q 004428 387 GTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKM 466 (754)
Q Consensus 387 g~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI 466 (754)
|+. .... .++... ++++|||+||++|.+++
T Consensus 141 g~~-----------------------------------------------~~~~-~~~~~~--~~~~ivv~Tp~~l~~~l 170 (410)
T 2j0s_A 141 GGT-----------------------------------------------NVGE-DIRKLD--YGQHVVAGTPGRVFDMI 170 (410)
T ss_dssp TTS-----------------------------------------------CHHH-HHHHHH--HCCSEEEECHHHHHHHH
T ss_pred CCC-----------------------------------------------CHHH-HHHHhh--cCCCEEEcCHHHHHHHH
Confidence 222 1111 111111 46899999999999998
Q ss_pred hhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCC
Q 004428 467 TKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHP 546 (754)
Q Consensus 467 ~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~ 546 (754)
.. ....++.+.++||||||.|+..+| ...+...+..+|.. +|+++||||+
T Consensus 171 ~~-------~~~~~~~~~~vViDEah~~~~~~~--~~~~~~i~~~~~~~---------------------~~~i~~SAT~ 220 (410)
T 2j0s_A 171 RR-------RSLRTRAIKMLVLDEADEMLNKGF--KEQIYDVYRYLPPA---------------------TQVVLISATL 220 (410)
T ss_dssp HT-------TSSCCTTCCEEEEETHHHHTSTTT--HHHHHHHHTTSCTT---------------------CEEEEEESCC
T ss_pred Hh-------CCccHhheeEEEEccHHHHHhhhh--HHHHHHHHHhCccC---------------------ceEEEEEcCC
Confidence 72 344688999999999999984333 33444445555543 8999999999
Q ss_pred CHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEec
Q 004428 547 NPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLS 626 (754)
Q Consensus 547 ~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~ 626 (754)
++++..++..++.++ +.+..... ......+.|.+..+... +.++.. +...+.....+++||||+
T Consensus 221 ~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~------~~k~~~----l~~~~~~~~~~~~lVf~~ 284 (410)
T 2j0s_A 221 PHEILEMTNKFMTDP---IRILVKRD---ELTLEGIKQFFVAVERE------EWKFDT----LCDLYDTLTITQAVIFCN 284 (410)
T ss_dssp CHHHHTTGGGTCSSC---EEECCCGG---GCSCTTEEEEEEEESST------THHHHH----HHHHHHHHTSSEEEEECS
T ss_pred CHHHHHHHHHHcCCC---EEEEecCc---cccCCCceEEEEEeCcH------HhHHHH----HHHHHHhcCCCcEEEEEc
Confidence 999988887777764 23321111 12345788888877543 223332 222223334579999999
Q ss_pred chhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhh
Q 004428 627 SYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPE 706 (754)
Q Consensus 627 Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~e 706 (754)
+...+..|.++|.+.++.+..+|+.+++.+|.++...|++|+.+|||+|+.+. +|+||++|++||+|++|.++..|.|
T Consensus 285 ~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~--~Gidi~~v~~Vi~~~~p~s~~~~~Q 362 (410)
T 2j0s_A 285 TKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA--RGLDVPQVSLIINYDLPNNRELYIH 362 (410)
T ss_dssp SHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGS--SSCCCTTEEEEEESSCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhh--CcCCcccCCEEEEECCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 707 IVNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 707 rigrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
|+||+||.+ .|.|++|++..|...|++|
T Consensus 363 r~GR~gR~g~~g~~~~~~~~~~~~~~~~i 391 (410)
T 2j0s_A 363 RIGRSGRYGRKGVAINFVKNDDIRILRDI 391 (410)
T ss_dssp HHTTSSGGGCCEEEEEEEEGGGHHHHHHH
T ss_pred hcccccCCCCceEEEEEecHHHHHHHHHH
Confidence 999999986 7999999999997666543
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.4e-42 Score=369.78 Aligned_cols=360 Identities=15% Similarity=0.197 Sum_probs=267.7
Q ss_pred cCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHH
Q 004428 225 FLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLN 304 (754)
Q Consensus 225 ~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LN 304 (754)
.+....+|.++++++.+++.+.+. |+.. |+|+|+++++.+++++|+++++.|| +|||.+|++++++
T Consensus 35 ~~~~~~~f~~~~l~~~~~~~l~~~----~~~~-~~~~Q~~~i~~~~~~~~~lv~a~TG---------sGKT~~~~~~~~~ 100 (414)
T 3eiq_A 35 WNEIVDSFDDMNLSESLLRGIYAY----GFEK-PSAIQQRAILPCIKGYDVIAQAQSG---------TGKTATFAISILQ 100 (414)
T ss_dssp CCCCCCCGGGGCCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHTTCCEEECCCSC---------SSSHHHHHHHHHH
T ss_pred ccchhcCHhhCCCCHHHHHHHHHc----CCCC-CCHHHHHHhHHHhCCCCEEEECCCC---------CcccHHHHHHHHH
Confidence 334467899999999999999874 7765 8999999999999999999999998 8999999999999
Q ss_pred HHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccc
Q 004428 305 HIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCD 384 (754)
Q Consensus 305 Hv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ 384 (754)
++... ...+++|||+|||+||.|+.+.+.+++.... .+...
T Consensus 101 ~~~~~--------------------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-------~~~~~ 141 (414)
T 3eiq_A 101 QIELD--------------------------------LKATQALVLAPTRELAQQIQKVVMALGDYMG-------ASCHA 141 (414)
T ss_dssp HCCTT--------------------------------SCSCCEEEECSSHHHHHHHHHHHHHHGGGSC-------CCEEE
T ss_pred HHhhc--------------------------------CCceeEEEEeChHHHHHHHHHHHHHHhcccC-------ceEEE
Confidence 88532 1246899999999999999999999864321 11112
Q ss_pred ccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHH
Q 004428 385 EFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQ 464 (754)
Q Consensus 385 efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~ 464 (754)
.+|+. ......-++. ..+++|||+||++|.+
T Consensus 142 ~~~~~-----------------------------------------------~~~~~~~~~~--~~~~~iiv~T~~~l~~ 172 (414)
T 3eiq_A 142 CIGGT-----------------------------------------------NVRAEVQKLQ--MEAPHIIVGTPGRVFD 172 (414)
T ss_dssp CCCCT-----------------------------------------------THHHHHHHHT--TTCCSEEEECHHHHHH
T ss_pred EECCc-----------------------------------------------chHHHHHHHh--cCCCCEEEECHHHHHH
Confidence 22221 1111111221 1468999999999999
Q ss_pred HHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcC
Q 004428 465 KMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSY 544 (754)
Q Consensus 465 lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSA 544 (754)
++.. ....+..+.++||||||.|+.. .+...+...+..++.. +|+|++||
T Consensus 173 ~l~~-------~~~~~~~~~~vViDEah~~~~~--~~~~~~~~~~~~~~~~---------------------~~~i~~SA 222 (414)
T 3eiq_A 173 MLNR-------RYLSPKYIKMFVLDEADEMLSR--GFKDQIYDIFQKLNSN---------------------TQVVLLSA 222 (414)
T ss_dssp HHHH-------TSSCSTTCCEEEECSHHHHHHT--TTHHHHHHHHTTSCTT---------------------CEEEEECS
T ss_pred HHHc-------CCcccccCcEEEEECHHHhhcc--CcHHHHHHHHHhCCCC---------------------CeEEEEEE
Confidence 8863 3445788999999999998843 3334444555555543 89999999
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEE
Q 004428 545 HPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLF 624 (754)
Q Consensus 545 t~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIF 624 (754)
|+++.+..++..++.++. .+.+... ......+.|.+..+.... .++. .+...+.....+++|||
T Consensus 223 T~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~------~~~~----~l~~~~~~~~~~~~lvf 286 (414)
T 3eiq_A 223 TMPSDVLEVTKKFMRDPI-RILVKKE-----ELTLEGIRQFYINVEREE------WKLD----TLCDLYETLTITQAVIF 286 (414)
T ss_dssp CCCHHHHHHHTTTCSSCE-EECCCCC-----CCCTTSCCEEEEECSSST------THHH----HHHHHHHSSCCSSCEEE
T ss_pred ecCHHHHHHHHHHcCCCE-EEEecCC-----ccCCCCceEEEEEeChHH------hHHH----HHHHHHHhCCCCcEEEE
Confidence 999999999988877742 2222111 123456788877765432 2332 22222333456799999
Q ss_pred ecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCch
Q 004428 625 LSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFY 704 (754)
Q Consensus 625 v~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY 704 (754)
|++...+..+.++|++.++.+..+|+.+++.+|.+++..|++|+.+|||+|+.+. +|+||++|++||+|++|.++..|
T Consensus 287 ~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~--~Gidip~v~~Vi~~~~p~s~~~~ 364 (414)
T 3eiq_A 287 INTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLA--RGIDVQQVSLVINYDLPTNRENY 364 (414)
T ss_dssp CSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC----CCGGGCSCEEESSCCSSTHHH
T ss_pred eCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccc--cCCCccCCCEEEEeCCCCCHHHh
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hhhccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 705 PEIVNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 705 ~erigrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
.||+||+||.+ .|.|++||++.|...++++
T Consensus 365 ~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 395 (414)
T 3eiq_A 365 IHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 395 (414)
T ss_dssp HHHSCCC-------CEEEEECSTHHHHHHHH
T ss_pred hhhcCcccCCCCCceEEEEEcHHHHHHHHHH
Confidence 99999999987 6999999999887766544
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.6e-41 Score=360.86 Aligned_cols=354 Identities=17% Similarity=0.203 Sum_probs=272.2
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCC--ccEEEecCCCCccCCCCCCchhHHHHHHHHH
Q 004428 226 LKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSY--RDILHSNKKPFYLKGQEEDSNIMETYLMHSL 303 (754)
Q Consensus 226 ~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y--~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~L 303 (754)
+....+|.+++|++.+++++.+. |+.. |+|+|++++|.++++ +|++.+++|| +|||.+|+++++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~~~lv~apTG---------sGKT~~~~~~~~ 86 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAM----GFNR-PSKIQENALPLMLAEPPQNLIAQSQSG---------TGKTAAFVLAML 86 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHSSSCCCEEEECCTT---------SCHHHHHHHHHH
T ss_pred ccccCCHhhCCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhcCCCCeEEEECCCC---------chHHHHHHHHHH
Confidence 34567899999999999999875 7875 899999999999987 9999999998 899999999999
Q ss_pred HHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccc
Q 004428 304 NHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFC 383 (754)
Q Consensus 304 NHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~ 383 (754)
+++... -..+++|||+|||+||.|+.+.+.++....... +..
T Consensus 87 ~~~~~~--------------------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~------~~~ 128 (412)
T 3fht_A 87 SQVEPA--------------------------------NKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL------KLA 128 (412)
T ss_dssp HHCCTT--------------------------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTC------CEE
T ss_pred HHhhhc--------------------------------CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccc------eEE
Confidence 988532 125789999999999999999999986432111 111
Q ss_pred cccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHH
Q 004428 384 DEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLH 463 (754)
Q Consensus 384 ~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr 463 (754)
...|+. .+.+. . ...++||||||++|.
T Consensus 129 ~~~~~~-----------------------------------------------~~~~~-~-----~~~~~ivv~T~~~l~ 155 (412)
T 3fht_A 129 YAVRGN-----------------------------------------------KLERG-Q-----KISEQIVIGTPGTVL 155 (412)
T ss_dssp EECTTC-----------------------------------------------CCCTT-C-----CCCCSEEEECHHHHH
T ss_pred EeecCc-----------------------------------------------chhhh-h-----cCCCCEEEECchHHH
Confidence 111111 00000 0 135799999999999
Q ss_pred HHHhhhhcccccCcccCCceeEEEEecchhhhh-cCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEE
Q 004428 464 QKMTKAEENKEQDVDYLSSIEVLIIDHADIILM-QNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVL 541 (754)
Q Consensus 464 ~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTll 541 (754)
.++.. .....++.+.++||||||.|+. +.+ ..+..++ ..+|. .+|+++
T Consensus 156 ~~~~~------~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~---~~~~~---------------------~~~~i~ 205 (412)
T 3fht_A 156 DWCSK------LKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQ---RMLPR---------------------NCQMLL 205 (412)
T ss_dssp HHHTT------SCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHH---HTSCT---------------------TCEEEE
T ss_pred HHHHh------cCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHH---hhCCC---------------------CceEEE
Confidence 98862 2344578999999999999983 333 3344333 33343 279999
Q ss_pred EcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcE
Q 004428 542 LSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGI 621 (754)
Q Consensus 542 FSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~t 621 (754)
+|||+++.+..++..++.++. .+.+... ......+.|.+..+.. .+.++.. +...+.....+++
T Consensus 206 ~SAT~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~------~~~~~~~----l~~~~~~~~~~~~ 269 (412)
T 3fht_A 206 FSATFEDSVWKFAQKVVPDPN-VIKLKRE-----EETLDTIKQYYVLCSS------RDEKFQA----LCNLYGAITIAQA 269 (412)
T ss_dssp EESCCCHHHHHHHHHHSSSCE-EECCCGG-----GSSCTTEEEEEEECSS------HHHHHHH----HHHHHHHHSSSEE
T ss_pred EEeecCHHHHHHHHHhcCCCe-EEeeccc-----cccccCceEEEEEcCC------hHHHHHH----HHHHHhhcCCCCE
Confidence 999999999999988887742 2222211 1235567887776542 2334432 2222233356799
Q ss_pred EEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCC
Q 004428 622 MLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERK 701 (754)
Q Consensus 622 LIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~p 701 (754)
||||++...+..|..+|.+.++.+..+|+.+++.+|.+++..|++|+.+|||+|+.+. +|+||++|++||+|++|.++
T Consensus 270 lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~--~Gidip~~~~Vi~~~~p~~~ 347 (412)
T 3fht_A 270 MIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA--RGIDVEQVSVVINFDLPVDK 347 (412)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGT--SSCCCTTEEEEEESSCCBCS
T ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccc--cCCCccCCCEEEEECCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999999999999765
Q ss_pred ------CchhhhccccCCCC-CceEEEEechhc-HHHHH
Q 004428 702 ------EFYPEIVNMLEGSH-NMTCTVLFSRFD-MLRLE 732 (754)
Q Consensus 702 ------efY~erigrt~ra~-~g~~~~L~sk~D-~~~LE 732 (754)
..|.||+||+||.+ .|.|++|++..+ ...+.
T Consensus 348 ~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~ 386 (412)
T 3fht_A 348 DGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILN 386 (412)
T ss_dssp SSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHH
T ss_pred CCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHH
Confidence 58999999999987 699999998554 44343
No 8
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.5e-43 Score=389.80 Aligned_cols=350 Identities=16% Similarity=0.187 Sum_probs=154.6
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCC--ccEEEecCCCCccCCCCCCchhHHHHHHHHHH
Q 004428 227 KDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSY--RDILHSNKKPFYLKGQEEDSNIMETYLMHSLN 304 (754)
Q Consensus 227 ~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y--~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LN 304 (754)
....+|.+++|++.+++++.++ |+.. |||+|++++|.++++ +|++++++|| +|||.+|++|+++
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~----g~~~-p~~~Q~~ai~~il~~~~~~~l~~a~TG---------sGKT~~~~l~il~ 154 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAM----GFNR-PSKIQENALPLMLAEPPQNLIAQSQSG---------TGKTAAFVLAMLS 154 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHTSBSCCEEEEECCSS---------SSHHHHHHHHHHT
T ss_pred cCcCCHHHcCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHHcCCCCcEEEEcCCC---------CchhHHHHHHHHH
Confidence 3467899999999999999875 8876 899999999999987 9999999998 8999999999998
Q ss_pred HHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccc
Q 004428 305 HIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCD 384 (754)
Q Consensus 305 Hv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ 384 (754)
++... -..|+||||+|||+||.|+.+.+.++....... +...
T Consensus 155 ~l~~~--------------------------------~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~------~~~~ 196 (479)
T 3fmp_B 155 QVEPA--------------------------------NKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL------KLAY 196 (479)
T ss_dssp TCCTT--------------------------------SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTC------CEEE
T ss_pred HHhhc--------------------------------CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCc------eEEE
Confidence 87432 135789999999999999999998885432100 1111
Q ss_pred ccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHH
Q 004428 385 EFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQ 464 (754)
Q Consensus 385 efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~ 464 (754)
..|+. .+.+. . ...++||||||++|.+
T Consensus 197 ~~~~~-----------------------------------------------~~~~~-~-----~~~~~Ivv~Tp~~l~~ 223 (479)
T 3fmp_B 197 AVRGN-----------------------------------------------KLERG-Q-----KISEQIVIGTPGTVLD 223 (479)
T ss_dssp ESTTC-----------------------------------------------CCCTT-C-----CCCCSEEEECHHHHHH
T ss_pred EeCCc-----------------------------------------------ccccc-c-----cCCCCEEEECchHHHH
Confidence 11111 01110 0 1357999999999999
Q ss_pred HHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcC
Q 004428 465 KMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSY 544 (754)
Q Consensus 465 lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSA 544 (754)
++.+ .....++.+.++||||||+|+. ++.+...+...+..+|.. +|+|+|||
T Consensus 224 ~l~~------~~~~~~~~~~~iViDEah~~~~-~~~~~~~~~~i~~~~~~~---------------------~~~i~~SA 275 (479)
T 3fmp_B 224 WCSK------LKFIDPKKIKVFVLDEADVMIA-TQGHQDQSIRIQRMLPRN---------------------CQMLLFSA 275 (479)
T ss_dssp HHTT------SCCCCGGGCCEEEECCHHHHHT-STTHHHHHHHHHTTSCTT---------------------SEEEEEES
T ss_pred HHHh------cCCcCcccCCEEEEECHHHHhh-cCCcHHHHHHHHhhCCcc---------------------ceEEEEeC
Confidence 9862 2344579999999999999983 123333444445555543 89999999
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEE
Q 004428 545 HPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLF 624 (754)
Q Consensus 545 t~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIF 624 (754)
|+++++..++..++.++ ..|.+... ......+.|.+..+... +.++.. +...+.....+++|||
T Consensus 276 T~~~~~~~~~~~~~~~~-~~i~~~~~-----~~~~~~~~~~~~~~~~~------~~~~~~----l~~~~~~~~~~~~lvF 339 (479)
T 3fmp_B 276 TFEDSVWKFAQKVVPDP-NVIKLKRE-----EETLDTIKQYYVLCSSR------DEKFQA----LCNLYGAITIAQAMIF 339 (479)
T ss_dssp CCCHHHHHHHHHHSSSE-EEEEEC--------------------------------------------------------
T ss_pred CCCHHHHHHHHHHcCCC-eEEecccc-----ccCcCCceEEEEEeCCH------HHHHHH----HHHHHhhccCCceEEE
Confidence 99999999999888774 24444322 12345677777665431 223221 2222222345789999
Q ss_pred ecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCC----
Q 004428 625 LSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPER---- 700 (754)
Q Consensus 625 v~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~---- 700 (754)
|++...+.+|...|...++.+..+|+.+++.+|.+++..|++|+++|||+|++++ ||+||++|++||+|++|.+
T Consensus 340 ~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~--~GlDip~v~~VI~~d~p~~~~~~ 417 (479)
T 3fmp_B 340 CHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA--RGIDVEQVSVVINFDLPVDKDGN 417 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccc--cCCccccCCEEEEecCCCCCccC
Confidence 9999999999999999999999999999999999999999999999999999999 9999999999999999964
Q ss_pred --CCchhhhccccCCCC-CceEEEEechhc
Q 004428 701 --KEFYPEIVNMLEGSH-NMTCTVLFSRFD 727 (754)
Q Consensus 701 --pefY~erigrt~ra~-~g~~~~L~sk~D 727 (754)
...|.||+||+||.+ .|.|++||+..+
T Consensus 418 ~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 418 PDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp ------------------------------
T ss_pred CCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 578999999999987 599999998655
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=9.7e-41 Score=353.18 Aligned_cols=354 Identities=15% Similarity=0.209 Sum_probs=272.9
Q ss_pred CCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCC--ccEEEecCCCCccCCCCCCchhHHHHHHHHHHH
Q 004428 228 DDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSY--RDILHSNKKPFYLKGQEEDSNIMETYLMHSLNH 305 (754)
Q Consensus 228 ~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y--~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNH 305 (754)
...+|++++|++.|+++|.+. |+.. |+|+|+++++.++++ +|++.+++|| +|||.+|+++++++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~----~~~~-~~~~Q~~~i~~~~~~~~~~~lv~a~TG---------sGKT~~~~~~~~~~ 68 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAM----KFQK-PSKIQERALPLLLHNPPRNMIAQSQSG---------TGKTAAFSLTMLTR 68 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHCSSCCCEEEECCTT---------SCHHHHHHHHHHHH
T ss_pred cccCHhhCCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHHcCCCCeEEEECCCC---------CcHHHHHHHHHHHH
Confidence 357899999999999999885 7765 899999999999998 9999999998 89999999999998
Q ss_pred HhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccc
Q 004428 306 IFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDE 385 (754)
Q Consensus 306 v~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~e 385 (754)
+.... ..++||||+|||+||.|+.+.+.++..... + .....
T Consensus 69 ~~~~~--------------------------------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~------~~~~~ 109 (395)
T 3pey_A 69 VNPED--------------------------------ASPQAICLAPSRELARQTLEVVQEMGKFTK-I------TSQLI 109 (395)
T ss_dssp CCTTC--------------------------------CSCCEEEECSSHHHHHHHHHHHHHHTTTSC-C------CEEEE
T ss_pred hccCC--------------------------------CCccEEEECCCHHHHHHHHHHHHHHhcccC-e------eEEEE
Confidence 85320 247899999999999999999999864332 0 11111
Q ss_pred cCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHH
Q 004428 386 FGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQK 465 (754)
Q Consensus 386 fg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~l 465 (754)
+|+.. .+. ...+++|||+||++|..+
T Consensus 110 ~~~~~------------------------------------------------~~~------~~~~~~iiv~T~~~l~~~ 135 (395)
T 3pey_A 110 VPDSF------------------------------------------------EKN------KQINAQVIVGTPGTVLDL 135 (395)
T ss_dssp STTSS------------------------------------------------CTT------SCBCCSEEEECHHHHHHH
T ss_pred ecCch------------------------------------------------hhh------ccCCCCEEEEcHHHHHHH
Confidence 11110 000 013589999999999998
Q ss_pred HhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCC
Q 004428 466 MTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYH 545 (754)
Q Consensus 466 I~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt 545 (754)
+.. ....++.+.++||||||.|+.. |.....+...+..+|.. +|++++|||
T Consensus 136 ~~~-------~~~~~~~~~~iIiDEah~~~~~-~~~~~~~~~~~~~~~~~---------------------~~~i~~SAT 186 (395)
T 3pey_A 136 MRR-------KLMQLQKIKIFVLDEADNMLDQ-QGLGDQCIRVKRFLPKD---------------------TQLVLFSAT 186 (395)
T ss_dssp HHT-------TCBCCTTCCEEEEETHHHHHHS-TTHHHHHHHHHHTSCTT---------------------CEEEEEESC
T ss_pred HHc-------CCcccccCCEEEEEChhhhcCc-cccHHHHHHHHHhCCCC---------------------cEEEEEEec
Confidence 862 3446899999999999999852 22223333334444442 799999999
Q ss_pred CCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEE
Q 004428 546 PNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLF 624 (754)
Q Consensus 546 ~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIF 624 (754)
+++.+..++..++.++. .+.+... ......+.+.+..+.. ...++. ++..+.. ...+++|||
T Consensus 187 ~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~------~~~~~~-----~l~~~~~~~~~~~~lvf 249 (395)
T 3pey_A 187 FADAVRQYAKKIVPNAN-TLELQTN-----EVNVDAIKQLYMDCKN------EADKFD-----VLTELYGLMTIGSSIIF 249 (395)
T ss_dssp CCHHHHHHHHHHSCSCE-EECCCGG-----GCSCTTEEEEEEECSS------HHHHHH-----HHHHHHTTTTSSEEEEE
T ss_pred CCHHHHHHHHHhCCCCe-EEEcccc-----ccccccccEEEEEcCc------hHHHHH-----HHHHHHHhccCCCEEEE
Confidence 99999999988877642 2222111 1224567777776542 123332 3333322 345899999
Q ss_pred ecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC-----
Q 004428 625 LSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE----- 699 (754)
Q Consensus 625 v~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~----- 699 (754)
|++...+..+.++|+..++.+..+|+.+++.+|.+++..|++|+.+|||+|+.+. +|+||++|++||+|++|.
T Consensus 250 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~--~Gidip~~~~Vi~~~~p~~~~~~ 327 (395)
T 3pey_A 250 VATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLA--RGIDIPTVSMVVNYDLPTLANGQ 327 (395)
T ss_dssp CSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGS--SSCCCTTEEEEEESSCCBCTTSS
T ss_pred eCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhh--cCCCcccCCEEEEcCCCCCCcCC
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred -CCCchhhhccccCCCC-CceEEEEechhcH----HHHHHHhC
Q 004428 700 -RKEFYPEIVNMLEGSH-NMTCTVLFSRFDM----LRLERIVG 736 (754)
Q Consensus 700 -~pefY~erigrt~ra~-~g~~~~L~sk~D~----~~LErIVG 736 (754)
++..|.||+||+||.+ .|.|+++++..+. ..+++..+
T Consensus 328 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 328 ADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp BCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 8899999999999987 5899999986543 34455555
No 10
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.1e-41 Score=359.25 Aligned_cols=354 Identities=18% Similarity=0.246 Sum_probs=274.1
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHH
Q 004428 227 KDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHI 306 (754)
Q Consensus 227 ~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv 306 (754)
....+|++++|++.|+++|.+. |+.. |+|+|+++++.+++++|++.+++|| +|||.+|+++++.++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~i~~~~~~li~a~TG---------sGKT~~~~~~~~~~~ 83 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEA----GFEK-PSPIQEEAIPVAITGRDILARAKNG---------TGKTAAFVIPTLEKV 83 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHHTCCEEEECCTT---------SCHHHHHHHHHHHHC
T ss_pred cccCChhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhcCCCEEEECCCC---------cHHHHHHHHHHHHHH
Confidence 3457899999999999999885 7875 8999999999999999999999998 899999999999987
Q ss_pred hhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccccc
Q 004428 307 FRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEF 386 (754)
Q Consensus 307 ~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ef 386 (754)
... ...+++|||+|||+||.|+.+.+.++.+... + +....+
T Consensus 84 ~~~--------------------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~------~~~~~~ 124 (400)
T 1s2m_A 84 KPK--------------------------------LNKIQALIMVPTRELALQTSQVVRTLGKHCG-I------SCMVTT 124 (400)
T ss_dssp CTT--------------------------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTTT-C------CEEEEC
T ss_pred hhc--------------------------------cCCccEEEEcCCHHHHHHHHHHHHHHhcccC-c------eEEEEe
Confidence 432 1246899999999999999999999875432 0 111112
Q ss_pred CCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHH
Q 004428 387 GTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKM 466 (754)
Q Consensus 387 g~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI 466 (754)
|+. .......++. .+++|||+||++|..++
T Consensus 125 g~~-----------------------------------------------~~~~~~~~~~---~~~~Ivv~T~~~l~~~~ 154 (400)
T 1s2m_A 125 GGT-----------------------------------------------NLRDDILRLN---ETVHILVGTPGRVLDLA 154 (400)
T ss_dssp SSS-----------------------------------------------CHHHHHHHTT---SCCSEEEECHHHHHHHH
T ss_pred CCc-----------------------------------------------chHHHHHHhc---CCCCEEEEchHHHHHHH
Confidence 211 1111112221 46899999999999988
Q ss_pred hhhhcccccCcccCCceeEEEEecchhhhhcCch-HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCC
Q 004428 467 TKAEENKEQDVDYLSSIEVLIIDHADIILMQNWS-WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYH 545 (754)
Q Consensus 467 ~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~-hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt 545 (754)
.. ....++.+.++||||||.|+...|. .+..+ +..+|. .+|.+++|||
T Consensus 155 ~~-------~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i---~~~~~~---------------------~~~~i~lSAT 203 (400)
T 1s2m_A 155 SR-------KVADLSDCSLFIMDEADKMLSRDFKTIIEQI---LSFLPP---------------------THQSLLFSAT 203 (400)
T ss_dssp HT-------TCSCCTTCCEEEEESHHHHSSHHHHHHHHHH---HTTSCS---------------------SCEEEEEESC
T ss_pred Hh-------CCcccccCCEEEEeCchHhhhhchHHHHHHH---HHhCCc---------------------CceEEEEEec
Confidence 62 3456899999999999999854342 23323 333343 3799999999
Q ss_pred CCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEe
Q 004428 546 PNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFL 625 (754)
Q Consensus 546 ~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv 625 (754)
+++.+..++..++.++. .+.+... .....+.|.+..+... .+.... ..+ +.....+++||||
T Consensus 204 ~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~-------~k~~~l-~~~---~~~~~~~~~lVf~ 265 (400)
T 1s2m_A 204 FPLTVKEFMVKHLHKPY-EINLMEE------LTLKGITQYYAFVEER-------QKLHCL-NTL---FSKLQINQAIIFC 265 (400)
T ss_dssp CCHHHHHHHHHHCSSCE-EESCCSS------CBCTTEEEEEEECCGG-------GHHHHH-HHH---HHHSCCSEEEEEC
T ss_pred CCHHHHHHHHHHcCCCe-EEEeccc------cccCCceeEEEEechh-------hHHHHH-HHH---HhhcCCCcEEEEE
Confidence 99999998888877641 2221111 1234677777765432 222211 122 2233567999999
Q ss_pred cchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchh
Q 004428 626 SSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYP 705 (754)
Q Consensus 626 ~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~ 705 (754)
++......|.++|+..++.+..+|+.+++.+|.++...|++|+.+|||+|+.+. +|+||+++++||+|++|.++..|.
T Consensus 266 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~--~Gidip~~~~Vi~~~~p~s~~~~~ 343 (400)
T 1s2m_A 266 NSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLT--RGIDIQAVNVVINFDFPKTAETYL 343 (400)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSS--SSCCCTTEEEEEESSCCSSHHHHH
T ss_pred ecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc--cCCCccCCCEEEEeCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hhccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 706 EIVNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 706 erigrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
||+||+||.+ .|.|++||++.|...|++|
T Consensus 344 Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i 373 (400)
T 1s2m_A 344 HRIGRSGRFGHLGLAINLINWNDRFNLYKI 373 (400)
T ss_dssp HHHCBSSCTTCCEEEEEEECGGGHHHHHHH
T ss_pred HhcchhcCCCCCceEEEEeccchHHHHHHH
Confidence 9999999987 7999999999997666544
No 11
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.1e-40 Score=352.21 Aligned_cols=348 Identities=17% Similarity=0.191 Sum_probs=269.9
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
.+|++++|++.+++++.++ |+.. |+|+|+++++.++.++|++..++|| +|||.+|+++++.++...
T Consensus 8 ~~f~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~lv~a~TG---------sGKT~~~~~~~~~~l~~~ 73 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC----GFEH-PSEVQHECIPQAILGMDVLCQAKSG---------MGKTAVFVLATLQQLEPV 73 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH----SCCS-CCHHHHHHHHHHTTTCCEEEECSSC---------SSHHHHHHHHHHHHCCCC
T ss_pred CChhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhcCCcEEEECCCC---------CcHHHHHHHHHHHhhccc
Confidence 5699999999999999886 7876 8999999999999999999999998 899999999999987432
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
-..+++|||+|||+||.|+.+.+.++......+ +....+|+.
T Consensus 74 --------------------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~------~~~~~~g~~ 115 (391)
T 1xti_A 74 --------------------------------TGQVSVLVMCHTRELAFQISKEYERFSKYMPNV------KVAVFFGGL 115 (391)
T ss_dssp --------------------------------TTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTC------CEEEECTTS
T ss_pred --------------------------------CCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCe------EEEEEeCCC
Confidence 024789999999999999999999986532111 111112211
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
......-.+.. ..++|||+||.+|..++..
T Consensus 116 -----------------------------------------------~~~~~~~~~~~--~~~~iiv~T~~~l~~~~~~- 145 (391)
T 1xti_A 116 -----------------------------------------------SIKKDEEVLKK--NCPHIVVGTPGRILALARN- 145 (391)
T ss_dssp -----------------------------------------------CHHHHHHHHHH--SCCSEEEECHHHHHHHHHT-
T ss_pred -----------------------------------------------CHHHHHHHHhc--CCCCEEEECHHHHHHHHHc-
Confidence 11111111111 3579999999999998862
Q ss_pred hcccccCcccCCceeEEEEecchhhhh--cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIILM--QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mLm--QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
....++.+.++||||||.|+. ..+..+. ..+...|. .+|++++|||++
T Consensus 146 ------~~~~~~~~~~vViDEaH~~~~~~~~~~~~~---~~~~~~~~---------------------~~~~i~~SAT~~ 195 (391)
T 1xti_A 146 ------KSLNLKHIKHFILDECDKMLEQLDMRRDVQ---EIFRMTPH---------------------EKQVMMFSATLS 195 (391)
T ss_dssp ------TSSCCTTCSEEEECSHHHHTSSHHHHHHHH---HHHHTSCS---------------------SSEEEEEESSCC
T ss_pred ------CCccccccCEEEEeCHHHHhhccchHHHHH---HHHhhCCC---------------------CceEEEEEeeCC
Confidence 334689999999999999974 2233333 33344443 289999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
+.+..++..++.++ ..+.+.... ......+.+.+..+... .+.. .+...+.....+++||||++
T Consensus 196 ~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~-------~~~~----~l~~~l~~~~~~~~lvf~~~ 259 (391)
T 1xti_A 196 KEIRPVCRKFMQDP-MEIFVDDET----KLTLHGLQQYYVKLKDN-------EKNR----KLFDLLDVLEFNQVVIFVKS 259 (391)
T ss_dssp STHHHHHHHHCSSC-EEEECCCCC----CCCCTTCEEEEEECCGG-------GHHH----HHHHHHHHSCCSEEEEECSC
T ss_pred HHHHHHHHHHcCCC-eEEEecCcc----ccCcccceEEEEEcCch-------hHHH----HHHHHHHhcCCCcEEEEeCc
Confidence 99999998888774 233332211 11234677777765432 2222 22222333456899999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
...+..+..+|++.++.+..+|+.+++.+|.++...|++|+.+|||+|+.+. +|+||+++++||+|++|.++..|.||
T Consensus 260 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~--~Gidi~~~~~Vi~~~~p~s~~~~~Qr 337 (391)
T 1xti_A 260 VQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFG--RGMDIERVNIAFNYDMPEDSDTYLHR 337 (391)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCS--SCBCCTTEEEEEESSCCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhh--cCCCcccCCEEEEeCCCCCHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhc
Q 004428 708 VNMLEGSH-NMTCTVLFSRFD 727 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D 727 (754)
+||++|.+ .|.|++|++..+
T Consensus 338 ~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 338 VARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp HCBCSSSCCCCEEEEEECSHH
T ss_pred cccccCCCCceEEEEEEcccc
Confidence 99999987 799999998764
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.3e-40 Score=344.91 Aligned_cols=347 Identities=16% Similarity=0.236 Sum_probs=274.3
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCC-ccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSY-RDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIF 307 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y-~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ 307 (754)
..+|++++|++.+.++|.+. |+.. |+|+|+++++.++++ ++++..++|| +|||.+|+++++.++.
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~~l~~~~TG---------sGKT~~~~~~~~~~~~ 70 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNK----GFEK-PTDIQMKVIPLFLNDEYNIVAQARTG---------SGKTASFAIPLIELVN 70 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHH----TCCS-CCHHHHHHHHHHHHTCSEEEEECCSS---------SSHHHHHHHHHHHHSC
T ss_pred cCchhhcCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhCCCCCEEEECCCC---------ChHHHHHHHHHHHHhc
Confidence 45799999999999999886 7765 899999999999988 7999999998 8999999999998874
Q ss_pred hcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccC
Q 004428 308 RTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFG 387 (754)
Q Consensus 308 ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg 387 (754)
.. ..+++|||+|||+||.|+.+.+.++.+... .+....+|
T Consensus 71 ~~---------------------------------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-------~~v~~~~~ 110 (367)
T 1hv8_A 71 EN---------------------------------NGIEAIILTPTRELAIQVADEIESLKGNKN-------LKIAKIYG 110 (367)
T ss_dssp SS---------------------------------SSCCEEEECSCHHHHHHHHHHHHHHHCSSC-------CCEEEECT
T ss_pred cc---------------------------------CCCcEEEEcCCHHHHHHHHHHHHHHhCCCC-------ceEEEEEC
Confidence 21 246899999999999999999999865321 11222222
Q ss_pred CCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHh
Q 004428 388 TKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMT 467 (754)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~ 467 (754)
+. ... ...+.. .+++|||+||.+|...+.
T Consensus 111 ~~-----------------------------------------------~~~-~~~~~~---~~~~iiv~T~~~l~~~~~ 139 (367)
T 1hv8_A 111 GK-----------------------------------------------AIY-PQIKAL---KNANIVVGTPGRILDHIN 139 (367)
T ss_dssp TS-----------------------------------------------CHH-HHHHHH---HTCSEEEECHHHHHHHHH
T ss_pred Cc-----------------------------------------------chH-HHHhhc---CCCCEEEecHHHHHHHHH
Confidence 21 111 111111 258999999999999886
Q ss_pred hhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
. ....++.+.++||||||.+.... ....+...++..+.. +|.+++|||++
T Consensus 140 ~-------~~~~~~~~~~iIiDEah~~~~~~--~~~~~~~~~~~~~~~---------------------~~~i~~SAT~~ 189 (367)
T 1hv8_A 140 R-------GTLNLKNVKYFILDEADEMLNMG--FIKDVEKILNACNKD---------------------KRILLFSATMP 189 (367)
T ss_dssp T-------TCSCTTSCCEEEEETHHHHHTTT--THHHHHHHHHTSCSS---------------------CEEEEECSSCC
T ss_pred c-------CCcccccCCEEEEeCchHhhhhc--hHHHHHHHHHhCCCC---------------------ceEEEEeeccC
Confidence 2 33458899999999999998433 334444444444432 79999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
+.+..++..++.++. .+. . .....+.+.+..+.. ..++.. ++ .+......++||||++
T Consensus 190 ~~~~~~~~~~~~~~~-~~~--~-------~~~~~~~~~~~~~~~-------~~~~~~----l~-~~l~~~~~~~lvf~~~ 247 (367)
T 1hv8_A 190 REILNLAKKYMGDYS-FIK--A-------KINANIEQSYVEVNE-------NERFEA----LC-RLLKNKEFYGLVFCKT 247 (367)
T ss_dssp HHHHHHHHHHCCSEE-EEE--C-------CSSSSSEEEEEECCG-------GGHHHH----HH-HHHCSTTCCEEEECSS
T ss_pred HHHHHHHHHHcCCCe-EEE--e-------cCCCCceEEEEEeCh-------HHHHHH----HH-HHHhcCCCcEEEEECC
Confidence 999988888776642 111 1 123367777776543 234432 22 2233456789999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
..++..+.++|++.++.+..+|+.+++.+|.++...|++|+.+|||+|+.+. +|+||+++++||+|++|.++..|.+|
T Consensus 248 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~--~Gid~~~~~~Vi~~~~~~s~~~~~Q~ 325 (367)
T 1hv8_A 248 KRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMS--RGIDVNDLNCVINYHLPQNPESYMHR 325 (367)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHH--HHCCCSCCSEEEESSCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhh--cCCCcccCCEEEEecCCCCHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
+||++|.+ .|.|+++|++.|...++.|
T Consensus 326 ~GR~~R~g~~g~~~~~~~~~~~~~~~~i 353 (367)
T 1hv8_A 326 IGRTGRAGKKGKAISIINRREYKKLRYI 353 (367)
T ss_dssp STTTCCSSSCCEEEEEECTTSHHHHHHH
T ss_pred ccccccCCCccEEEEEEcHHHHHHHHHH
Confidence 99999987 7999999999998766554
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.5e-41 Score=357.88 Aligned_cols=356 Identities=15% Similarity=0.211 Sum_probs=156.8
Q ss_pred cCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHH
Q 004428 225 FLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLN 304 (754)
Q Consensus 225 ~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LN 304 (754)
..+...+|.+++|++.|++.|... |+.. |+|+|+++++.+++++|++.+++|| +|||.+|++++++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~i~~~~~~lv~~~TG---------sGKT~~~~~~~~~ 81 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGY----GFEE-PSAIQQRAIMPIIEGHDVLAQAQSG---------TGKTGTFSIAALQ 81 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHH----TCCS-CCHHHHHHHHHHHHTCCEEECCCSS---------HHHHHHHHHHHHH
T ss_pred cccccCChhhcCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------ChHHHHHHHHHHH
Confidence 345567899999999999999886 7766 8999999999999999999999998 9999999999999
Q ss_pred HHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccc
Q 004428 305 HIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCD 384 (754)
Q Consensus 305 Hv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ 384 (754)
++... ...+++|||+|||+||.|+.+.+.++..... .+...
T Consensus 82 ~l~~~--------------------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-------~~~~~ 122 (394)
T 1fuu_A 82 RIDTS--------------------------------VKAPQALMLAPTRELALQIQKVVMALAFHMD-------IKVHA 122 (394)
T ss_dssp HCCTT--------------------------------CCSCCEEEECSSHHHHHHHHHHHHHHTTTSC-------CCEEE
T ss_pred Hhhcc--------------------------------CCCCCEEEEcCCHHHHHHHHHHHHHHhccCC-------eeEEE
Confidence 87532 1357899999999999999999999865431 11111
Q ss_pred ccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHH
Q 004428 385 EFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQ 464 (754)
Q Consensus 385 efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~ 464 (754)
..|+. .... ..+.. .+++|||+||.+|..
T Consensus 123 ~~g~~-----------------------------------------------~~~~-~~~~~---~~~~i~v~T~~~l~~ 151 (394)
T 1fuu_A 123 CIGGT-----------------------------------------------SFVE-DAEGL---RDAQIVVGTPGRVFD 151 (394)
T ss_dssp ECSSC-----------------------------------------------CHHH-HHHHH---HHCSEEEECHHHHHH
T ss_pred EeCCC-----------------------------------------------chHH-HHhhc---CCCCEEEECHHHHHH
Confidence 22211 1111 11111 258999999999999
Q ss_pred HHhhhhcccccCcccCCceeEEEEecchhhhhcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEc
Q 004428 465 KMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLS 543 (754)
Q Consensus 465 lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFS 543 (754)
.+.. ....++.+.++|+||||.|+..+| ..+..++.. +|. .+|.+++|
T Consensus 152 ~~~~-------~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~---~~~---------------------~~~~i~~S 200 (394)
T 1fuu_A 152 NIQR-------RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL---LPP---------------------TTQVVLLS 200 (394)
T ss_dssp HHHT-------TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHH---SCT---------------------TCEEEEEC
T ss_pred HHHh-------CCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHh---CCC---------------------CceEEEEE
Confidence 8862 234588999999999999985444 445555544 333 27999999
Q ss_pred CCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhh-hcCCCcEE
Q 004428 544 YHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIK-DSIQGGIM 622 (754)
Q Consensus 544 At~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~-~~~~~~tL 622 (754)
||+++.+..++..++.++ ..+.+.... .....+.|.+..+... +.+.. .+..+. ....+++|
T Consensus 201 AT~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~------~~~~~-----~l~~~~~~~~~~~~l 263 (394)
T 1fuu_A 201 ATMPNDVLEVTTKFMRNP-VRILVKKDE-----LTLEGIKQFYVNVEEE------EYKYE-----CLTDLYDSISVTQAV 263 (394)
T ss_dssp SSCCHHHHHHHHHHCCSC-EEEEECC------------------------------------------------------
T ss_pred EecCHHHHHHHHHhcCCC-eEEEecCcc-----ccCCCceEEEEEcCch------hhHHH-----HHHHHHhcCCCCcEE
Confidence 999999999998888774 233332211 1234566666655432 11222 222222 22457899
Q ss_pred EEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCC
Q 004428 623 LFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKE 702 (754)
Q Consensus 623 IFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pe 702 (754)
|||++...+..+...|++.++.+..+|+.+++.+|.++...|++|+.+|||+|+.+. +|+||+++++||+|++|.++.
T Consensus 264 Vf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~--~Gldi~~~~~Vi~~~~p~s~~ 341 (394)
T 1fuu_A 264 IFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLA--RGIDVQQVSLVINYDLPANKE 341 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhh--cCCCcccCCEEEEeCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred chhhhccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 703 FYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 703 fY~erigrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
.|.||+||+||.+ .|.|++++++.|...++++
T Consensus 342 ~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l 374 (394)
T 1fuu_A 342 NYIHRIGRGGRFGRKGVAINFVTNEDVGAMREL 374 (394)
T ss_dssp ---------------------------------
T ss_pred HHHHHcCcccCCCCCceEEEEEchhHHHHHHHH
Confidence 9999999999987 7999999999886555443
No 14
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=8.8e-40 Score=384.00 Aligned_cols=366 Identities=11% Similarity=0.048 Sum_probs=243.7
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
.|+ . |||+|..++|++++|+ ++.++|| +|||.||+||++.+.+.
T Consensus 80 lG~-~-pt~VQ~~~ip~ll~G~--Iaea~TG---------eGKTlaf~LP~~l~aL~----------------------- 123 (844)
T 1tf5_A 80 TGM-F-PFKVQLMGGVALHDGN--IAEMKTG---------EGKTLTSTLPVYLNALT----------------------- 123 (844)
T ss_dssp HSC-C-CCHHHHHHHHHHHTTS--EEECCTT---------SCHHHHHHHHHHHHHTT-----------------------
T ss_pred cCC-C-CcHHHHHhhHHHhCCC--EEEccCC---------cHHHHHHHHHHHHHHHc-----------------------
Confidence 588 4 8999999999999999 8999998 99999999999955431
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
.+.||||+|||+||.|+.+.+..|....+ + +....+||.
T Consensus 124 ------------g~~vlVltptreLA~qd~e~~~~l~~~lg-l------~v~~i~gg~---------------------- 162 (844)
T 1tf5_A 124 ------------GKGVHVVTVNEYLASRDAEQMGKIFEFLG-L------TVGLNLNSM---------------------- 162 (844)
T ss_dssp ------------SSCEEEEESSHHHHHHHHHHHHHHHHHTT-C------CEEECCTTS----------------------
T ss_pred ------------CCCEEEEeCCHHHHHHHHHHHHHHHhhcC-C------eEEEEeCCC----------------------
Confidence 24699999999999999999999864321 1 222233332
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhH-HHHHhhhhcccccCcccCCceeEEEEec
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINL-HQKMTKAEENKEQDVDYLSSIEVLIIDH 490 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgL-r~lI~~~e~~k~rd~dfLSSIEiLVlDe 490 (754)
....+... |++||+||||+|| .+++...-. ..++...|+.+.++||||
T Consensus 163 -------------------------~~~~r~~~-----~~~dIv~gTpgrlgfD~L~D~m~-~~~~~l~lr~~~~lVlDE 211 (844)
T 1tf5_A 163 -------------------------SKDEKREA-----YAADITYSTNNELGFDYLRDNMV-LYKEQMVQRPLHFAVIDE 211 (844)
T ss_dssp -------------------------CHHHHHHH-----HHSSEEEEEHHHHHHHHHHHTTC-SSGGGCCCCCCCEEEEET
T ss_pred -------------------------CHHHHHHh-----cCCCEEEECchhhhHHHHHHhhh-cchhhhcccCCCEEEECc
Confidence 22223332 5799999999999 555432100 012334689999999999
Q ss_pred chhhh-hcC-c------------hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEE----------------
Q 004428 491 ADIIL-MQN-W------------SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTV---------------- 540 (754)
Q Consensus 491 AD~mL-mQN-w------------~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTl---------------- 540 (754)
||+|| +.. + .+...|-..+..+|.+ .|| .++. .-|||+
T Consensus 212 aD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~---~~y------~vd~---k~rq~~lt~~g~~~~e~~~~i~ 279 (844)
T 1tf5_A 212 VDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAE---KDY------TYDI---KTKAVQLTEEGMTKAEKAFGID 279 (844)
T ss_dssp HHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSS---SSB------CCCS---SSCCCCBCHHHHHHHHHHTTCS
T ss_pred hhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCccc---ccc------eecc---ccceEEecHHHHHHHHHHhCcc
Confidence 99998 432 1 1233444444555642 111 1221 238998
Q ss_pred -EEcCCCCH---HHHHHHH--Hhhc-C--C---CceEEEeecccCccc-------------------------cccccee
Q 004428 541 -LLSYHPNP---EINAFFN--HHCA-N--Y---QGKVKLACEYKGVLP-------------------------KVLLNVR 583 (754)
Q Consensus 541 -lFSAt~~p---einsL~~--~~~~-N--~---~G~Vkv~~~~~g~i~-------------------------~v~~~I~ 583 (754)
|||||+++ .|+.+++ .++. + | .|+|.+....+|.+- .+...|.
T Consensus 280 ~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It 359 (844)
T 1tf5_A 280 NLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATIT 359 (844)
T ss_dssp CTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEE
T ss_pred ccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceee
Confidence 99999874 4544432 2222 1 1 144444433333221 0001111
Q ss_pred EE------------------------------EEEeccCcc----------cchhHHHHHHHHHHHhHHhhhcCCCcEEE
Q 004428 584 QI------------------------------YERFNADSI----------AKADDARLEYFTKKVFPKIKDSIQGGIML 623 (754)
Q Consensus 584 Q~------------------------------f~r~~~~s~----------~~~~d~Rf~yF~~~iLp~l~~~~~~~tLI 623 (754)
+. +..++...+ ......|+...+..+. .+. ....++||
T Consensus 360 ~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~-~~~-~~~~pvLV 437 (844)
T 1tf5_A 360 FQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVA-QRY-MTGQPVLV 437 (844)
T ss_dssp HHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHH-HHH-HHTCCEEE
T ss_pred HHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHH-HHH-hcCCcEEE
Confidence 10 011111100 0123456654333221 111 13457999
Q ss_pred EecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC--------CCCeEEEc
Q 004428 624 FLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR--------GIQNLIIY 695 (754)
Q Consensus 624 Fv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk--------gV~~VIfY 695 (754)
||+|......|...|++.|+++..||+...++++..+...|+.| +||||||+|+ ||+||+ |+.|||||
T Consensus 438 ft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAg--RG~DI~l~~~V~~~ggl~VIn~ 513 (844)
T 1tf5_A 438 GTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAG--RGTDIKLGEGVKELGGLAVVGT 513 (844)
T ss_dssp EESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSS--TTCCCCCCTTSGGGTSEEEEES
T ss_pred EECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccc--cCcCccccchhhhcCCcEEEEe
Confidence 99999999999999999999999999998877776665566665 6999999999 999999 99999999
Q ss_pred cCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 696 SLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 696 ~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
++|.+++.|.||+|||||+| .|.+++++|..|. |-|+.|..+...++.
T Consensus 514 d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~--l~r~f~~~~~~~~~~ 562 (844)
T 1tf5_A 514 ERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE--LMRRFGAERTMAMLD 562 (844)
T ss_dssp SCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS--GGGSSHHHHHHHHHH
T ss_pred cCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH--HHHHHhHHHHHHHHH
Confidence 99999999999999999998 6999999998873 233455555555543
No 15
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.7e-37 Score=320.63 Aligned_cols=328 Identities=17% Similarity=0.224 Sum_probs=255.0
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccc
Q 004428 237 LKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKN 316 (754)
Q Consensus 237 L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~kn 316 (754)
|++.|.+++.++ |+.. |+|.|+++++.+++++|++..++|| +|||.+|+++++.+
T Consensus 1 l~~~i~~~l~~~----g~~~-l~~~Q~~~i~~i~~~~~~lv~~~TG---------sGKT~~~~~~~~~~----------- 55 (337)
T 2z0m_A 1 MNEKIEQAIREM----GFKN-FTEVQSKTIPLMLQGKNVVVRAKTG---------SGKTAAYAIPILEL----------- 55 (337)
T ss_dssp CCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SSHHHHHHHHHHHH-----------
T ss_pred CCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhcCCCEEEEcCCC---------CcHHHHHHHHHHhh-----------
Confidence 467788888774 8876 8999999999999999999999998 89999999998762
Q ss_pred hhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcc
Q 004428 317 DTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKD 396 (754)
Q Consensus 317 n~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~ 396 (754)
.+++|||+|||+||.|+.+.+.++.+... .+....+|+.
T Consensus 56 ---------------------------~~~~liv~P~~~L~~q~~~~~~~~~~~~~-------~~~~~~~~~~------- 94 (337)
T 2z0m_A 56 ---------------------------GMKSLVVTPTRELTRQVASHIRDIGRYMD-------TKVAEVYGGM------- 94 (337)
T ss_dssp ---------------------------TCCEEEECSSHHHHHHHHHHHHHHTTTSC-------CCEEEECTTS-------
T ss_pred ---------------------------cCCEEEEeCCHHHHHHHHHHHHHHhhhcC-------CcEEEEECCc-------
Confidence 14689999999999999999999865431 0111222221
Q ss_pred cchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccC
Q 004428 397 DDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQD 476 (754)
Q Consensus 397 ~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd 476 (754)
... ...+.. .+++|+|+||.+|..++.. .
T Consensus 95 ----------------------------------------~~~-~~~~~~---~~~~i~v~T~~~l~~~~~~-------~ 123 (337)
T 2z0m_A 95 ----------------------------------------PYK-AQINRV---RNADIVVATPGRLLDLWSK-------G 123 (337)
T ss_dssp ----------------------------------------CHH-HHHHHH---TTCSEEEECHHHHHHHHHT-------T
T ss_pred ----------------------------------------chH-HHHhhc---CCCCEEEECHHHHHHHHHc-------C
Confidence 111 112212 3589999999999998762 3
Q ss_pred cccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHH
Q 004428 477 VDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFN 555 (754)
Q Consensus 477 ~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~ 555 (754)
...++.+.++|+||||.|.. +.+..+..++.. .|. .+|++++|||+++.+..++.
T Consensus 124 ~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~---~~~---------------------~~~~~~~SAT~~~~~~~~~~ 179 (337)
T 2z0m_A 124 VIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQ---TSN---------------------RKITGLFSATIPEEIRKVVK 179 (337)
T ss_dssp SCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHH---CTT---------------------CSEEEEEESCCCHHHHHHHH
T ss_pred CcchhhCcEEEEEChHHhhccccHHHHHHHHhh---CCc---------------------ccEEEEEeCcCCHHHHHHHH
Confidence 44588999999999999984 334455555543 343 27899999999999999999
Q ss_pred HhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHH
Q 004428 556 HHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLR 635 (754)
Q Consensus 556 ~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlr 635 (754)
.++.++. .+ ... .....+.+.|..+..... ..+..+......++||||++..+...+.
T Consensus 180 ~~~~~~~-~~--~~~------~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~lvf~~~~~~~~~l~ 237 (337)
T 2z0m_A 180 DFITNYE-EI--EAC------IGLANVEHKFVHVKDDWR-------------SKVQALRENKDKGVIVFVRTRNRVAKLV 237 (337)
T ss_dssp HHSCSCE-EE--ECS------GGGGGEEEEEEECSSSSH-------------HHHHHHHTCCCSSEEEECSCHHHHHHHH
T ss_pred HhcCCce-ee--ecc------cccCCceEEEEEeChHHH-------------HHHHHHHhCCCCcEEEEEcCHHHHHHHH
Confidence 8887752 22 111 123457777777653211 1223344456789999999999999999
Q ss_pred HHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC
Q 004428 636 NFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH 715 (754)
Q Consensus 636 n~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~ 715 (754)
+.|+ .+..+|+.+++.+|.++...|++|+.+|||+|+.+. +|+||+++++||+|++|.++..|.+|+||+||.+
T Consensus 238 ~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~--~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g 311 (337)
T 2z0m_A 238 RLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVAS--RGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMG 311 (337)
T ss_dssp TTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHH--TTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGG
T ss_pred HHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccc--cCCCccCCCEEEEecCCCCHHHhhHhcCccccCC
Confidence 9887 588999999999999999999999999999999999 9999999999999999999999999999999987
Q ss_pred -CceEEEEechhcHHHHHHH
Q 004428 716 -NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 716 -~g~~~~L~sk~D~~~LErI 734 (754)
.|.|+++++ .|...+++|
T Consensus 312 ~~g~~~~~~~-~~~~~~~~i 330 (337)
T 2z0m_A 312 RKGEAITFIL-NEYWLEKEV 330 (337)
T ss_dssp CCEEEEEEES-SCHHHHHHH
T ss_pred CCceEEEEEe-CcHHHHHHH
Confidence 689999998 665444433
No 16
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2e-37 Score=335.60 Aligned_cols=330 Identities=14% Similarity=0.121 Sum_probs=235.4
Q ss_pred CCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccc
Q 004428 253 GGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGIL 332 (754)
Q Consensus 253 g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~ 332 (754)
|+ . |||+|++++|.+++++|++++++|| +|||.+|+++++.++.
T Consensus 19 ~~-~-~~~~Q~~~i~~i~~~~~~lv~apTG---------sGKT~~~l~~~~~~~~------------------------- 62 (414)
T 3oiy_A 19 GK-D-LTGYQRLWAKRIVQGKSFTMVAPTG---------VGKTTFGMMTALWLAR------------------------- 62 (414)
T ss_dssp SS-C-CCHHHHHHHHHHTTTCCEECCSCSS---------SSHHHHHHHHHHHHHT-------------------------
T ss_pred CC-C-CCHHHHHHHHHHhcCCCEEEEeCCC---------CCHHHHHHHHHHHHhc-------------------------
Confidence 55 3 8999999999999999999999998 8999999999988761
Q ss_pred cccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCC
Q 004428 333 IGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNS 412 (754)
Q Consensus 333 ~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~ 412 (754)
..++||||+|||+||.|+.+.+.++++ .. + +....+|+...
T Consensus 63 ----------~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~-~------~v~~~~g~~~~--------------------- 103 (414)
T 3oiy_A 63 ----------KGKKSALVFPTVTLVKQTLERLQKLAD-EK-V------KIFGFYSSMKK--------------------- 103 (414)
T ss_dssp ----------TTCCEEEEESSHHHHHHHHHHHHHHCC-SS-C------CEEECCTTSCH---------------------
T ss_pred ----------CCCEEEEEECCHHHHHHHHHHHHHHcc-CC-c------eEEEEECCCCh---------------------
Confidence 136899999999999999999999876 21 1 22223332210
Q ss_pred CCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecch
Q 004428 413 QKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHAD 492 (754)
Q Consensus 413 ~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD 492 (754)
+-....++.... ..++||||||++|.+++.. ..++.+.++||||||
T Consensus 104 ------------------------~~~~~~~~~l~~-~~~~Iiv~Tp~~l~~~l~~---------~~~~~~~~iViDEaH 149 (414)
T 3oiy_A 104 ------------------------EEKEKFEKSFEE-DDYHILVFSTQFVSKNREK---------LSQKRFDFVFVDDVD 149 (414)
T ss_dssp ------------------------HHHHHHHHHHHH-TCCSEEEEEHHHHHHCHHH---------HTTCCCSEEEESCHH
T ss_pred ------------------------hhHHHHHHHhhc-CCCCEEEECHHHHHHHHHH---------hccccccEEEEeChH
Confidence 000112221211 2389999999999988762 347799999999995
Q ss_pred ----------hhh--hcCchH-HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCC-CCHHHHHHHHHhh
Q 004428 493 ----------IIL--MQNWSW-LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYH-PNPEINAFFNHHC 558 (754)
Q Consensus 493 ----------~mL--mQNw~h-v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt-~~peinsL~~~~~ 558 (754)
+|+ ++++.. +..++..+...+. +.+++ .+..+|+++|||| .++.+...+.+.+
T Consensus 150 ~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~------~~~l~-------~~~~~~~i~~SAT~~~~~~~~~~~~~~ 216 (414)
T 3oiy_A 150 AVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI------YERPK-------NLKPGILVVSSATAKPRGIRPLLFRDL 216 (414)
T ss_dssp HHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC------CCCCT-------TCCCCEEEESSCCSSCCSSTTHHHHHH
T ss_pred hhhhccchhhhHHhhcCCcHHHHHHHHHhcccchh------hhhcc-------cCCCceEEEEecCCCcchhHHHHHHHh
Confidence 444 677777 7778877631100 00000 0134899999999 5655553333333
Q ss_pred cCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHH
Q 004428 559 ANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFL 638 (754)
Q Consensus 559 ~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~L 638 (754)
.+. .+.. .......+.|.+..++. ..++. .++.. ...++||||++...+.+|..+|
T Consensus 217 ~~~----~~~~-----~~~~~~~i~~~~~~~~~-------~~~l~----~~l~~----~~~~~lVF~~~~~~~~~l~~~L 272 (414)
T 3oiy_A 217 LNF----TVGR-----LVSVARNITHVRISSRS-------KEKLV----ELLEI----FRDGILIFAQTEEEGKELYEYL 272 (414)
T ss_dssp HSC----CSSC-----CCCCCCSEEEEEESSCC-------HHHHH----HHHHH----HCSSEEEEESSHHHHHHHHHHH
T ss_pred hcc----CcCc-----cccccccchheeeccCH-------HHHHH----HHHHH----cCCCEEEEECCHHHHHHHHHHH
Confidence 321 1111 11234567887765421 11111 22222 2489999999999999999999
Q ss_pred HhCCCceE-eecCCCCHHHHHHHHHHHhcCCccEEEE----cccccccCccccCC-CCeEEEccCC--CCCCchhhhccc
Q 004428 639 KSQNASFC-LLGDYTEPSDISRARVWFFEGKRKMILY----TERSHFYHRYKIRG-IQNLIIYSLP--ERKEFYPEIVNM 710 (754)
Q Consensus 639 k~~~~~f~-~Ihey~sq~~r~rar~~F~~G~~~ILL~----TErahffRr~dIkg-V~~VIfY~lP--~~pefY~erigr 710 (754)
++.++++. .+|+. +|. +..|++|+++|||+ |+.+. ||+||++ |++||+|++| .++..|.||+||
T Consensus 273 ~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~--~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR 344 (414)
T 3oiy_A 273 KRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLT--RGVDLPERIKYVIFWGTPSGPDVYTYIQASGR 344 (414)
T ss_dssp HHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCC--CCCCCTTTCCEEEEESCCTTTCHHHHHHHHGG
T ss_pred HHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhh--ccCccccccCEEEEECCCCCCCHHHHHHHhCc
Confidence 99999998 99994 333 99999999999999 99999 9999999 9999999999 999999999999
Q ss_pred cCCCC-----CceEEEEechhc-HHHHHHHhC
Q 004428 711 LEGSH-----NMTCTVLFSRFD-MLRLERIVG 736 (754)
Q Consensus 711 t~ra~-----~g~~~~L~sk~D-~~~LErIVG 736 (754)
+||.+ .|.|++|+...+ ...|++.++
T Consensus 345 ~gR~g~~~~~~g~~i~~~~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 345 SSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 376 (414)
T ss_dssp GCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred cccCCCCCCcceEEEEEEccHHHHHHHHHHhc
Confidence 99975 588998884332 245555555
No 17
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.3e-35 Score=340.92 Aligned_cols=352 Identities=11% Similarity=0.075 Sum_probs=258.2
Q ss_pred cCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCC
Q 004428 232 YSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRD 311 (754)
Q Consensus 232 f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~ 311 (754)
+.++++++.+.+.|.+.+ |+.. |+|+|+++|+.+++++|+++.++|| +|||.+|+||+|.+
T Consensus 23 ~~~~~l~~~l~~~L~~~f---g~~~-~rp~Q~~~i~~il~g~d~lv~~pTG---------sGKTl~~~lpal~~------ 83 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVF---KLEK-FRPLQLETINVTMAGKEVFLVMPTG---------GGKSLCYQLPALCS------ 83 (591)
T ss_dssp CSCSTTHHHHHHHHHHTS---CCCS-CCTTHHHHHHHHHTTCCEEEECCTT---------SCTTHHHHHHHHTS------
T ss_pred cccCCCCHHHHHHHHHHh---CCCC-CCHHHHHHHHHHHcCCCEEEEECCC---------ChHHHHHHHHHHHc------
Confidence 456889999999998853 7766 8999999999999999999999998 89999999999741
Q ss_pred ccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCcc
Q 004428 312 LVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKE 391 (754)
Q Consensus 312 ~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~ 391 (754)
.+++|||+|||+|+.|+++.|.++.-.. ....|+...
T Consensus 84 --------------------------------~g~~lVisP~~~L~~q~~~~l~~~gi~~-----------~~l~~~~~~ 120 (591)
T 2v1x_A 84 --------------------------------DGFTLVICPLISLMEDQLMVLKQLGISA-----------TMLNASSSK 120 (591)
T ss_dssp --------------------------------SSEEEEECSCHHHHHHHHHHHHHHTCCE-----------EECCSSCCH
T ss_pred --------------------------------CCcEEEEeCHHHHHHHHHHHHHhcCCcE-----------EEEeCCCCH
Confidence 1379999999999999999999873211 111221100
Q ss_pred ccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHh-hhcccCCCCEEEeCchhHH---HHHh
Q 004428 392 EEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIK-LYNDFYTSDMIVASPINLH---QKMT 467 (754)
Q Consensus 392 ~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lk-Lys~Fy~sDIIVASPlgLr---~lI~ 467 (754)
.-.+..+. +.......+|||+||.+|. .++.
T Consensus 121 ---------------------------------------------~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~ 155 (591)
T 2v1x_A 121 ---------------------------------------------EHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMS 155 (591)
T ss_dssp ---------------------------------------------HHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHH
T ss_pred ---------------------------------------------HHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHH
Confidence 00000111 1111246899999999874 2222
Q ss_pred hhhcccccCcccCCceeEEEEecchhhhhcCchH-----HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEE
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIILMQNWSW-----LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLL 542 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~h-----v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllF 542 (754)
.- .....++.|.++||||||.|+. |.| +..+-......| -+|+|+|
T Consensus 156 ~l-----~~~~~~~~i~~iViDEAH~is~--~g~dfr~~~~~l~~l~~~~~----------------------~~~ii~l 206 (591)
T 2v1x_A 156 RL-----EKAYEARRFTRIAVDEVHCCSQ--WGHDFRPDYKALGILKRQFP----------------------NASLIGL 206 (591)
T ss_dssp HH-----HHHHHTTCEEEEEEETGGGGST--TCTTCCGGGGGGGHHHHHCT----------------------TSEEEEE
T ss_pred HH-----HhhhhccCCcEEEEECcccccc--cccccHHHHHHHHHHHHhCC----------------------CCcEEEE
Confidence 10 0133578999999999999973 432 111100111112 2799999
Q ss_pred cCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhc-CCCcE
Q 004428 543 SYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDS-IQGGI 621 (754)
Q Consensus 543 SAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~-~~~~t 621 (754)
|||.++.+...+..++... ..+.+.... ..+.+...+.. ... ....++. .++..+... ...++
T Consensus 207 SAT~~~~v~~~i~~~l~~~-~~~~~~~~~------~r~nl~~~v~~--~~~---~~~~~~~----~l~~~l~~~~~~~~~ 270 (591)
T 2v1x_A 207 TATATNHVLTDAQKILCIE-KCFTFTASF------NRPNLYYEVRQ--KPS---NTEDFIE----DIVKLINGRYKGQSG 270 (591)
T ss_dssp ESSCCHHHHHHHHHHTTCC-SCEEEECCC------CCTTEEEEEEE--CCS---SHHHHHH----HHHHHHTTTTTTCEE
T ss_pred ecCCCHHHHHHHHHHhCCC-CcEEEecCC------CCcccEEEEEe--CCC---cHHHHHH----HHHHHHHHhccCCCe
Confidence 9999999988887776653 233332210 12233222221 111 1122332 344444332 45789
Q ss_pred EEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCC
Q 004428 622 MLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERK 701 (754)
Q Consensus 622 LIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~p 701 (754)
||||+|..++..|...|++.++.+..+|+.+++.+|.++...|++|+++|||+|+.+. +|+|+++|++||+|++|.++
T Consensus 271 IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~--~GID~p~V~~VI~~~~p~s~ 348 (591)
T 2v1x_A 271 IIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFG--MGIDKPDVRFVIHHSMSKSM 348 (591)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSC--TTCCCSCEEEEEESSCCSSH
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh--cCCCcccccEEEEeCCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999988 99999999999999999999
Q ss_pred CchhhhccccCCCC-CceEEEEechhcHHHHHHHhCc
Q 004428 702 EFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGS 737 (754)
Q Consensus 702 efY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt 737 (754)
+.|.|++||+||.| .|.|++||+..|...+..++..
T Consensus 349 ~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~~ 385 (591)
T 2v1x_A 349 ENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVM 385 (591)
T ss_dssp HHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTTT
T ss_pred HHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHhh
Confidence 99999999999987 6899999999999999888764
No 18
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=4.2e-37 Score=360.86 Aligned_cols=361 Identities=13% Similarity=0.065 Sum_probs=220.2
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|||+|..++|++++|+ ++.++|| +|||.||+||++.+.+.
T Consensus 75 p~~VQ~~~i~~ll~G~--Iaem~TG---------sGKTlaf~LP~l~~~l~----------------------------- 114 (853)
T 2fsf_A 75 HFDVQLLGGMVLNERC--IAEMRTG---------EGKTLTATLPAYLNALT----------------------------- 114 (853)
T ss_dssp CCHHHHHHHHHHHSSE--EEECCTT---------SCHHHHHHHHHHHHHTT-----------------------------
T ss_pred CChHHHhhcccccCCe--eeeecCC---------chHHHHHHHHHHHHHHc-----------------------------
Confidence 8999999999999999 8999998 99999999999976531
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
.++||||+|||+||.|+.+.+..++.... + +....||
T Consensus 115 ------g~~vlVltPTreLA~Q~~e~~~~l~~~lg-l------~v~~i~G------------------------------ 151 (853)
T 2fsf_A 115 ------GKGVHVVTVNDYLAQRDAENNRPLFEFLG-L------TVGINLP------------------------------ 151 (853)
T ss_dssp ------SSCCEEEESSHHHHHHHHHHHHHHHHHTT-C------CEEECCT------------------------------
T ss_pred ------CCcEEEEcCCHHHHHHHHHHHHHHHHhcC-C------eEEEEeC------------------------------
Confidence 24699999999999999999999864321 1 1222333
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhH-HHHHhhhhcccccCcccCCceeEEEEecchhhh-
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINL-HQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL- 495 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgL-r~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL- 495 (754)
| +....+.+. |++|||||||||| .+++...-. ..++...++.+.+|||||||+||
T Consensus 152 --------G---------~~~~~r~~~-----~~~dIvvgTpgrl~fDyLrd~~~-~~~~~~~~~~l~~lVlDEaD~mLi 208 (853)
T 2fsf_A 152 --------G---------MPAPAKREA-----YAADITYGTNNEYGFDYLRDNMA-FSPEERVQRKLHYALVDEVDSILI 208 (853)
T ss_dssp --------T---------CCHHHHHHH-----HHSSEEEEEHHHHHHHHHHHTTC-SSGGGCCCCSCCEEEESCHHHHTT
T ss_pred --------C---------CCHHHHHHh-----cCCCEEEECCchhhHHHHHhhhh-ccHhHhcccCCcEEEECchHHHHH
Confidence 2 222233333 4799999999999 787763110 01223468999999999999999
Q ss_pred hc----------------CchHHHHHHHHhccCCCCCC--------CCchhhhhhhhcccCCCccccEE-----------
Q 004428 496 MQ----------------NWSWLIEVVEQLNRIPSKQH--------GTDVMRIRQWYLDGYSRFYRQTV----------- 540 (754)
Q Consensus 496 mQ----------------Nw~hv~~Il~~Ln~~Pk~~h--------~~DfsRvR~w~L~~~ak~~RQTl----------- 540 (754)
+. ++..+..|+..| |+... ..|| .++. .-||++
T Consensus 209 D~a~tpLIiSg~~~~~~~~y~~i~~iv~~L---~~~~~~~~~~~~~~~dy------~vde---k~rqv~lte~g~~~~e~ 276 (853)
T 2fsf_A 209 DEARTPLIISGPAEDSSEMYKRVNKIIPHL---IRQEKEDSETFQGEGHF------SVDE---KSRQVNLTERGLVLIEE 276 (853)
T ss_dssp TTTTCEEEEEEC--------------------------------------------------------------------
T ss_pred hcCcccccccCCCccchhHHHHHHHHHHhc---hhhhccccccccccccc------eecc---ccceEEEcHHHHHHHHH
Confidence 33 345566666554 43100 0122 1111 125543
Q ss_pred -------------EEcCCCCHH---HHHHH--HHhhc---CC---CceEEEeecccCcc---------------------
Q 004428 541 -------------LLSYHPNPE---INAFF--NHHCA---NY---QGKVKLACEYKGVL--------------------- 575 (754)
Q Consensus 541 -------------lFSAt~~pe---insL~--~~~~~---N~---~G~Vkv~~~~~g~i--------------------- 575 (754)
|||||+++- |+..+ +.++. +| .|.|.+....+|.+
T Consensus 277 ~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~ 356 (853)
T 2fsf_A 277 LLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQ 356 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccce
Confidence 999998753 33221 11111 00 02221111111100
Q ss_pred ----cccccceeE-EE-----------------------------EEeccCc----------ccchhHHHHHHHHHHHhH
Q 004428 576 ----PKVLLNVRQ-IY-----------------------------ERFNADS----------IAKADDARLEYFTKKVFP 611 (754)
Q Consensus 576 ----~~v~~~I~Q-~f-----------------------------~r~~~~s----------~~~~~d~Rf~yF~~~iLp 611 (754)
+.+...|.| .| ..++... .-.....|++..+ .
T Consensus 357 I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~----~ 432 (853)
T 2fsf_A 357 IQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAII----E 432 (853)
T ss_dssp CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHH----H
T ss_pred ecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHH----H
Confidence 011122221 00 1111100 0012345665333 3
Q ss_pred Hhhh--cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCC
Q 004428 612 KIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGI 689 (754)
Q Consensus 612 ~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV 689 (754)
.|.. ....++||||+|......|...|++.|++...||+...++++..+...|+.| .||||||+|+ ||.||+.+
T Consensus 433 ~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAg--RGtDI~l~ 508 (853)
T 2fsf_A 433 DIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAG--RGTDIVLG 508 (853)
T ss_dssp HHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCS--SCSCCCTT
T ss_pred HHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEeccccc--CCcCccCC
Confidence 3322 2346799999999999999999999999999999998888887777889988 6999999999 99999974
Q ss_pred -------------------------------------CeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHH
Q 004428 690 -------------------------------------QNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRL 731 (754)
Q Consensus 690 -------------------------------------~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~L 731 (754)
.|||+|++|.++..|.||+|||||.| .|+++.++|..| .|
T Consensus 509 gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD--~l 586 (853)
T 2fsf_A 509 GSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED--AL 586 (853)
T ss_dssp CCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS--GG
T ss_pred CchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH--HH
Confidence 69999999999999999999999998 699999999888 34
Q ss_pred HHHhCchHHHHhhhc
Q 004428 732 ERIVGSAHAKKMVKS 746 (754)
Q Consensus 732 ErIVGt~ra~~m~~s 746 (754)
=|+.|..|...|+..
T Consensus 587 ~r~f~~~~~~~~~~~ 601 (853)
T 2fsf_A 587 MRIFASDRVSGMMRK 601 (853)
T ss_dssp GGTTCCHHHHTTGGG
T ss_pred HHHhhHHHHHHHHHh
Confidence 466888888777753
No 19
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.8e-35 Score=323.78 Aligned_cols=348 Identities=11% Similarity=0.090 Sum_probs=210.3
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|+|+|.++++.+++++|++.++.|| +|||.+|++++++++.+.+.
T Consensus 5 ~~~~Q~~~i~~~~~~~~~l~~~~tG---------sGKT~~~~~~~~~~~~~~~~-------------------------- 49 (555)
T 3tbk_A 5 PRNYQLELALPAKKGKNTIICAPTG---------CGKTFVSLLICEHHLKKFPC-------------------------- 49 (555)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTT---------SCHHHHHHHHHHHHHHTCCS--------------------------
T ss_pred CcHHHHHHHHHHhCCCCEEEEeCCC---------ChHHHHHHHHHHHHHHhccc--------------------------
Confidence 7999999999999999999999998 89999999999999975421
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
...++||||+|||+||.|+.+.+.++++... .+....+|+...
T Consensus 50 ----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-------~~~~~~~g~~~~-------------------------- 92 (555)
T 3tbk_A 50 ----GQKGKVVFFANQIPVYEQQATVFSRYFERLG-------YNIASISGATSD-------------------------- 92 (555)
T ss_dssp ----SCCCCEEEECSSHHHHHHHHHHHHHHHHTTT-------CCEEEECTTTGG--------------------------
T ss_pred ----CCCCEEEEEeCCHHHHHHHHHHHHHHhccCC-------cEEEEEcCCCcc--------------------------
Confidence 1257899999999999999999999865321 122223333210
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
....+.+ . .++||||+||++|..++.. .....++.+.++||||||.|...
T Consensus 93 -------------------~~~~~~~--~---~~~~i~v~T~~~l~~~~~~------~~~~~~~~~~~vViDEah~~~~~ 142 (555)
T 3tbk_A 93 -------------------SVSVQHI--I---EDNDIIILTPQILVNNLNN------GAIPSLSVFTLMIFDECHNTSKN 142 (555)
T ss_dssp -------------------GSCHHHH--H---HHCSEEEECHHHHHHHHHT------SSSCCGGGCSEEEETTGGGCSTT
T ss_pred -------------------hhhHHHH--h---cCCCEEEECHHHHHHHHhc------CcccccccCCEEEEECccccCCc
Confidence 0011111 1 2589999999999998862 12226899999999999999843
Q ss_pred CchHHHHHH-HHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHH----H---HHHHHHhhcCCC-ceEEEe
Q 004428 498 NWSWLIEVV-EQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE----I---NAFFNHHCANYQ-GKVKLA 568 (754)
Q Consensus 498 Nw~hv~~Il-~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pe----i---nsL~~~~~~N~~-G~Vkv~ 568 (754)
. ....++ ..+.... ........|+|++|||.+.. + ..-+...|.+.. ..+...
T Consensus 143 ~--~~~~~~~~~~~~~~----------------~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 204 (555)
T 3tbk_A 143 H--PYNQIMFRYLDHKL----------------GESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATV 204 (555)
T ss_dssp C--HHHHHHHHHHHHHT----------------SSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECC
T ss_pred c--hHHHHHHHHHHhhh----------------ccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeecc
Confidence 2 233333 2222111 11112347999999999541 1 111112222211 112211
Q ss_pred ecccCcccccccceeEEEEEeccCccc-----------------------------------------------------
Q 004428 569 CEYKGVLPKVLLNVRQIYERFNADSIA----------------------------------------------------- 595 (754)
Q Consensus 569 ~~~~g~i~~v~~~I~Q~f~r~~~~s~~----------------------------------------------------- 595 (754)
......+..........+..++.....
T Consensus 205 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 284 (555)
T 3tbk_A 205 RDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSV 284 (555)
T ss_dssp CSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhh
Confidence 100000000001111111111100000
Q ss_pred --------------------------------------------------------------------------------
Q 004428 596 -------------------------------------------------------------------------------- 595 (754)
Q Consensus 596 -------------------------------------------------------------------------------- 595 (754)
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (555)
T 3tbk_A 285 FQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSR 364 (555)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHH
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhcc
Confidence
Q ss_pred --chhHHHHHHHHHHHhHHh-hhcCCCcEEEEecchhcHHHHHHHHHhCC------------CceEeecCCCCHHHHHHH
Q 004428 596 --KADDARLEYFTKKVFPKI-KDSIQGGIMLFLSSYFEFVRLRNFLKSQN------------ASFCLLGDYTEPSDISRA 660 (754)
Q Consensus 596 --~~~d~Rf~yF~~~iLp~l-~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~------------~~f~~Ihey~sq~~r~ra 660 (754)
.....++..+.. +|..+ ......++||||++......|.++|+..+ ..+..+|+.+++.+|.++
T Consensus 365 ~~~~~~~k~~~l~~-~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~ 443 (555)
T 3tbk_A 365 DPSNENPKLRDLYL-VLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCV 443 (555)
T ss_dssp CGGGCCHHHHHHHH-HHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC------------------
T ss_pred CCCcCCHHHHHHHH-HHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHH
Confidence 000122222222 22222 22346899999999999999999999874 345556669999999999
Q ss_pred HHHHhc-CCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechhcHH
Q 004428 661 RVWFFE-GKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRFDML 729 (754)
Q Consensus 661 r~~F~~-G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~D~~ 729 (754)
+..|++ |+++|||+|+++. +|+||++|++||+|++|.+|..|.||+|| ||...|.|+.|+++.+..
T Consensus 444 ~~~F~~~g~~~vLvaT~~~~--~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 444 LEAFRASGDNNILIATSVAD--EGIDIAECNLVILYEYVGNVIKMIQTRGR-GRARDSKCFLLTSSADVI 510 (555)
T ss_dssp --------CCSEEEECCCTT--CCEETTSCSEEEEESCCSSCCCEECSSCC-CTTTSCEEEEEESCHHHH
T ss_pred HHHHhcCCCeeEEEEcchhh--cCCccccCCEEEEeCCCCCHHHHHHhcCc-CcCCCceEEEEEcCCCHH
Confidence 999999 9999999999999 99999999999999999999999999999 988889999999987654
No 20
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=6.7e-35 Score=323.83 Aligned_cols=110 Identities=9% Similarity=0.074 Sum_probs=60.0
Q ss_pred cCCCcEEEEecchhcHHHHHHHHHhC------------CCceEeecCCCCHHHHHHHHHHHhc-CCccEEEEcccccccC
Q 004428 616 SIQGGIMLFLSSYFEFVRLRNFLKSQ------------NASFCLLGDYTEPSDISRARVWFFE-GKRKMILYTERSHFYH 682 (754)
Q Consensus 616 ~~~~~tLIFv~Sy~d~vrlrn~Lk~~------------~~~f~~Ihey~sq~~r~rar~~F~~-G~~~ILL~TErahffR 682 (754)
....++||||++...+..|..+|++. |..+..+|+.+++.+|.+++..|++ |+++|||+|+++. +
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~--~ 465 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVAD--E 465 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchh--c
Confidence 45689999999999999999999876 4555556677999999999999999 9999999999999 9
Q ss_pred ccccCCCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechhcH
Q 004428 683 RYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRFDM 728 (754)
Q Consensus 683 r~dIkgV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~D~ 728 (754)
|+||++|++||+|++|.+|..|.||+|| ||...|.|+.|+++.+.
T Consensus 466 GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 466 GIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 510 (556)
T ss_dssp -------CEEEEETCCSCHHHHHHC---------CCEEEEESCHHH
T ss_pred CCCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCceEEEEEeCcch
Confidence 9999999999999999999999999999 99888999999998765
No 21
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=7.2e-35 Score=342.73 Aligned_cols=362 Identities=12% Similarity=0.053 Sum_probs=249.9
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
.|+ . |||+|..++|++++|+ ++.++|| +|||.+|+||++-+.+.
T Consensus 108 lG~-r-P~~VQ~~~ip~Ll~G~--Iaem~TG---------eGKTLa~~LP~~l~aL~----------------------- 151 (922)
T 1nkt_A 108 LDQ-R-PFDVQVMGAAALHLGN--VAEMKTG---------EGKTLTCVLPAYLNALA----------------------- 151 (922)
T ss_dssp HSC-C-CCHHHHHHHHHHHTTE--EEECCTT---------SCHHHHTHHHHHHHHTT-----------------------
T ss_pred cCC-C-CCHHHHHHHHhHhcCC--EEEecCC---------CccHHHHHHHHHHHHHh-----------------------
Confidence 476 3 8999999999999999 8999998 99999999999765541
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
.+.|+||+|||+||.|+.+.+..+....+ + +....+|+
T Consensus 152 ------------g~~v~VvTpTreLA~Qdae~m~~l~~~lG-L------sv~~i~gg----------------------- 189 (922)
T 1nkt_A 152 ------------GNGVHIVTVNDYLAKRDSEWMGRVHRFLG-L------QVGVILAT----------------------- 189 (922)
T ss_dssp ------------TSCEEEEESSHHHHHHHHHHHHHHHHHTT-C------CEEECCTT-----------------------
T ss_pred ------------CCCeEEEeCCHHHHHHHHHHHHHHHhhcC-C------eEEEEeCC-----------------------
Confidence 13699999999999999999998864322 1 11122332
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhH-HHHHhhhhcccccCcccCCceeEEEEec
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINL-HQKMTKAEENKEQDVDYLSSIEVLIIDH 490 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgL-r~lI~~~e~~k~rd~dfLSSIEiLVlDe 490 (754)
+....+.+. |++||+||||++| .+++...-. ..++...++.+.++||||
T Consensus 190 ------------------------~~~~~r~~~-----y~~DIvygTpgrlgfDyLrD~m~-~~~~~l~lr~l~~lIVDE 239 (922)
T 1nkt_A 190 ------------------------MTPDERRVA-----YNADITYGTNNEFGFDYLRDNMA-HSLDDLVQRGHHYAIVDE 239 (922)
T ss_dssp ------------------------CCHHHHHHH-----HHSSEEEEEHHHHHHHHHHHTTC-SSGGGCCCCCCCEEEETT
T ss_pred ------------------------CCHHHHHHh-----cCCCEEEECchHhhHHHHHhhhh-ccHhhhccCCCCEEEEeC
Confidence 222222332 5699999999999 677652110 012234688999999999
Q ss_pred chhhh-h----------------cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEE-------------
Q 004428 491 ADIIL-M----------------QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTV------------- 540 (754)
Q Consensus 491 AD~mL-m----------------QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTl------------- 540 (754)
||+|| + +++..+..|+..| |++ .| +.+|. .-||++
T Consensus 240 aDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L---~~~---~d------y~vDe---k~rqv~Lte~G~~~~e~~l 304 (922)
T 1nkt_A 240 VDSILIDEARTPLIISGPADGASNWYTEFARLAPLM---EKD---VH------YEVDL---RKRTVGVHEKGVEFVEDQL 304 (922)
T ss_dssp HHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHS---CBT---TT------EEEET---TTTEEEECHHHHHHHHHHH
T ss_pred hHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhC---ccc---cc------ceecc---CcceEEecHhHHHHHHHHh
Confidence 99999 3 3445666666654 532 12 22222 238999
Q ss_pred ----EEcCCCCH---HHHHHHHH--hhc-CC-----CceEEEeecccCccc-------------------------cccc
Q 004428 541 ----LLSYHPNP---EINAFFNH--HCA-NY-----QGKVKLACEYKGVLP-------------------------KVLL 580 (754)
Q Consensus 541 ----lFSAt~~p---einsL~~~--~~~-N~-----~G~Vkv~~~~~g~i~-------------------------~v~~ 580 (754)
|||||+++ .|+..++. ++. +. .|.|.+....+|.+- .+..
T Consensus 305 ~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~Tla 384 (922)
T 1nkt_A 305 GIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLA 384 (922)
T ss_dssp TCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEE
T ss_pred CCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccc
Confidence 99999985 44443222 221 10 134444333333211 0111
Q ss_pred cee-EEE-----------------------------EEeccCc----------ccchhHHHHHHHHHHHhHHhhh--cCC
Q 004428 581 NVR-QIY-----------------------------ERFNADS----------IAKADDARLEYFTKKVFPKIKD--SIQ 618 (754)
Q Consensus 581 ~I~-Q~f-----------------------------~r~~~~s----------~~~~~d~Rf~yF~~~iLp~l~~--~~~ 618 (754)
.|. |.| ..++... .-.....|++..+. .|.. ...
T Consensus 385 tIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~----~i~~~~~~g 460 (922)
T 1nkt_A 385 TITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVD----DVAERYAKG 460 (922)
T ss_dssp EECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHH----HHHHHHHTT
T ss_pred eeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHH----HHHHHHhcC
Confidence 222 111 1111100 00123456653333 3322 234
Q ss_pred CcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCC---------
Q 004428 619 GGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGI--------- 689 (754)
Q Consensus 619 ~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV--------- 689 (754)
.++||||.|......|...|++.|++...||+...++++..+...|+.| .|||||++|+ ||+||+.+
T Consensus 461 qpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAg--RGtDI~l~~~~~~~~~~ 536 (922)
T 1nkt_A 461 QPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAG--RGTDIVLGGNVDFLTDQ 536 (922)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCS--TTCCCCTTCCHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhh--cCccccCCCCHHHHHHH
Confidence 5799999999999999999999999999999998777777777788888 6999999999 99999986
Q ss_pred -------------------------------------------CeEEEccCCCCCCchhhhccccCCCC-CceEEEEech
Q 004428 690 -------------------------------------------QNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSR 725 (754)
Q Consensus 690 -------------------------------------------~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk 725 (754)
-|||+|++|.++..|.||+|||||.| .|+++.++|.
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSl 616 (922)
T 1nkt_A 537 RLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSL 616 (922)
T ss_dssp HHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEET
T ss_pred HHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEech
Confidence 49999999999999999999999998 6899999998
Q ss_pred hcHHHHHHHhCchHHHHhhhc
Q 004428 726 FDMLRLERIVGSAHAKKMVKS 746 (754)
Q Consensus 726 ~D~~~LErIVGt~ra~~m~~s 746 (754)
.|. |=|+.|..+...|+..
T Consensus 617 eD~--l~r~f~~~~~~~~~~~ 635 (922)
T 1nkt_A 617 GDE--LMRRFNGAALETLLTR 635 (922)
T ss_dssp TSH--HHHHTTHHHHHHHHHH
T ss_pred hHH--HHHHhhhHHHHHHHHH
Confidence 875 5567888888777753
No 22
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-35 Score=333.92 Aligned_cols=353 Identities=12% Similarity=0.155 Sum_probs=231.7
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCC--ccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHh
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSY--RDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIF 307 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y--~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ 307 (754)
..+...++.+.+++.|.+. |+.. |+|+|+++++.++++ +|++.++.|| +|||.+|+++++.++.
T Consensus 119 ~~~~~~~l~~~~~~~l~~~----g~~~-p~~~Q~~ai~~i~~~~~~~~ll~apTG---------sGKT~~~~~~il~~l~ 184 (508)
T 3fho_A 119 XXXXXXXXXXXXXXXXXXX----XXXX-XXKIQEKALPLLLSNPPRNMIGQSQSG---------TGKTAAFALTMLSRVD 184 (508)
T ss_dssp ------------------------CEE-CCCTTSSSHHHHHCSSCCCEEEECCSS---------TTSHHHHHHHHHHHSC
T ss_pred ccccccccccccccccccc----cccC-cHHHHHHHHHHHHcCCCCCEEEECCCC---------ccHHHHHHHHHHHHHH
Confidence 3455667778888877664 6655 899999999999998 9999999998 8999999999999885
Q ss_pred hcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccC
Q 004428 308 RTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFG 387 (754)
Q Consensus 308 ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg 387 (754)
+. ...++||||+|||+||.|+.+.+.++..... + +....++
T Consensus 185 ~~--------------------------------~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~-~------~~~~~~~ 225 (508)
T 3fho_A 185 AS--------------------------------VPKPQAICLAPSRELARQIMDVVTEMGKYTE-V------KTAFGIK 225 (508)
T ss_dssp TT--------------------------------CCSCCEEEECSCHHHHHHHHHHHHHHSTTSS-C------CEEC---
T ss_pred hC--------------------------------CCCceEEEEECcHHHHHHHHHHHHHhCCccC-e------eEEEEeC
Confidence 32 1357899999999999999999999865431 0 1111111
Q ss_pred CCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHh
Q 004428 388 TKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMT 467 (754)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~ 467 (754)
+. .. ... ..+++|||+||.+|..++.
T Consensus 226 ~~------------------------------------------------~~-~~~-----~~~~~Ivv~T~~~l~~~l~ 251 (508)
T 3fho_A 226 DS------------------------------------------------VP-KGA-----KIDAQIVIGTPGTVMDLMK 251 (508)
T ss_dssp -------------------------------------------------------------CCCCSEEEECHHHHHHHHH
T ss_pred Cc------------------------------------------------cc-ccc-----cCCCCEEEECHHHHHHHHH
Confidence 10 00 000 1258999999999999886
Q ss_pred hhhcccccCcccCCceeEEEEecchhhhh--cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCC
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIILM--QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYH 545 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mLm--QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt 545 (754)
. ....++.+.++||||||.+.. ..+..+..|+..+ |. ..|+|++|||
T Consensus 252 ~-------~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~---~~---------------------~~~~i~lSAT 300 (508)
T 3fho_A 252 R-------RQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLL---PR---------------------NTQIVLFSAT 300 (508)
T ss_dssp T-------TCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHS---CT---------------------TCEEEEEESC
T ss_pred c-------CCccccCCCEEEEechhhhcccCCcHHHHHHHHHhC---Cc---------------------CCeEEEEeCC
Confidence 2 233578999999999999984 2333444444443 33 2799999999
Q ss_pred CCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEe
Q 004428 546 PNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFL 625 (754)
Q Consensus 546 ~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv 625 (754)
+++.+..+...++.++ ..+.+... ......+.+.+..+... ..+... +...+.....+++||||
T Consensus 301 ~~~~~~~~~~~~~~~~-~~i~~~~~-----~~~~~~~~~~~~~~~~~------~~k~~~----l~~ll~~~~~~~~LVF~ 364 (508)
T 3fho_A 301 FSERVEKYAERFAPNA-NEIRLKTE-----ELSVEGIKQLYMDCQSE------EHKYNV----LVELYGLLTIGQSIIFC 364 (508)
T ss_dssp CSTHHHHHHHHHSTTC-EEECCCCC-----C----CCCCEEEEC--C------HHHHHH----HHHHHC---CCCEEEBC
T ss_pred CCHHHHHHHHHhcCCC-eEEEeccc-----cCCcccceEEEEECCch------HHHHHH----HHHHHHhcCCCcEEEEE
Confidence 9999999998887774 23322211 01234566666655322 233332 22222233468999999
Q ss_pred cchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCC------C
Q 004428 626 SSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLP------E 699 (754)
Q Consensus 626 ~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP------~ 699 (754)
++...+..+...|.+.++.+..+|+.+++.+|.+++..|++|+.+|||+|+.+. +|+||++|++||+|++| .
T Consensus 365 ~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~--~GiDip~v~~VI~~~~p~~~~~~~ 442 (508)
T 3fho_A 365 KKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIA--RGIDVSQVNLVVNYDMPLDQAGRP 442 (508)
T ss_dssp SSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-------CCCTTCCEEEC----CC-----
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhh--cCCCccCCCEEEEECCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999 99999999999999999 7
Q ss_pred CCCchhhhccccCCCC-CceEEEEech-hc---HHHHHHHhCch
Q 004428 700 RKEFYPEIVNMLEGSH-NMTCTVLFSR-FD---MLRLERIVGSA 738 (754)
Q Consensus 700 ~pefY~erigrt~ra~-~g~~~~L~sk-~D---~~~LErIVGt~ 738 (754)
++..|.+|+||+||.+ .|.|++|++. .| ...+++..+.+
T Consensus 443 s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~ 486 (508)
T 3fho_A 443 DPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRP 486 (508)
T ss_dssp CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCC
T ss_pred CHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCC
Confidence 8999999999999987 6899999984 33 55666666543
No 23
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4.7e-34 Score=322.84 Aligned_cols=344 Identities=13% Similarity=0.076 Sum_probs=251.5
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
.+|.+++|++.+.+.+.+.+ |+.. ++|+|.++|+.+++++|+++.++|| +|||.+|.+|+|.+
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~---g~~~-~r~~Q~~~i~~il~g~d~lv~apTG---------sGKTl~~~lp~l~~---- 64 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETF---GYQQ-FRPGQEEIIDTVLSGRDCLVVMPTG---------GGKSLCYQIPALLL---- 64 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTT---CCSS-CCTTHHHHHHHHHTTCCEEEECSCH---------HHHHHHHHHHHHHS----
T ss_pred CChhhCCCCHHHHHHHHHHh---CCCC-CCHHHHHHHHHHHcCCCEEEECCCC---------cHHHHHHHHHHHHh----
Confidence 57899999999999998853 7766 7999999999999999999999998 89999999999731
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
..++|||+|||+|+.|+++.+.++.-... ...|+.
T Consensus 65 ----------------------------------~g~~lvi~P~~aL~~q~~~~l~~~gi~~~-----------~l~~~~ 99 (523)
T 1oyw_A 65 ----------------------------------NGLTVVVSPLISLMKDQVDQLQANGVAAA-----------CLNSTQ 99 (523)
T ss_dssp ----------------------------------SSEEEEECSCHHHHHHHHHHHHHTTCCEE-----------EECTTS
T ss_pred ----------------------------------CCCEEEECChHHHHHHHHHHHHHcCCcEE-----------EEeCCC
Confidence 13589999999999999999988632110 011111
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHH-hhhcccCCCCEEEeCchhHHHHHhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSI-KLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~l-kLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
.. .-....+ .+.+ ...+|+|+||.+|....-
T Consensus 100 ~~---------------------------------------------~~~~~~~~~~~~--~~~~ilv~Tpe~l~~~~~- 131 (523)
T 1oyw_A 100 TR---------------------------------------------EQQLEVMTGCRT--GQIRLLYIAPERLMLDNF- 131 (523)
T ss_dssp CH---------------------------------------------HHHHHHHHHHHH--TCCSEEEECHHHHTSTTH-
T ss_pred CH---------------------------------------------HHHHHHHHHHhc--CCCCEEEECHHHHhChHH-
Confidence 00 0000001 1111 358999999999953211
Q ss_pred hhcccccCcccCCceeEEEEecchhhhhcCchH-----HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEc
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILMQNWSW-----LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLS 543 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~h-----v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFS 543 (754)
.+......+.++||||||.|.. |.| ...|...+...|. .|+|++|
T Consensus 132 ------~~~l~~~~~~~vViDEaH~i~~--~g~~fr~~~~~l~~l~~~~~~----------------------~~~i~lS 181 (523)
T 1oyw_A 132 ------LEHLAHWNPVLLAVDEAHCISQ--WGHDFRPEYAALGQLRQRFPT----------------------LPFMALT 181 (523)
T ss_dssp ------HHHHTTSCEEEEEESSGGGGCT--TSSCCCHHHHGGGGHHHHCTT----------------------SCEEEEE
T ss_pred ------HHHHhhCCCCEEEEeCccccCc--CCCccHHHHHHHHHHHHhCCC----------------------CCEEEEe
Confidence 0111247899999999999973 432 2222222222222 7899999
Q ss_pred CCCCHHHHHHHHHhhc-CCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEE
Q 004428 544 YHPNPEINAFFNHHCA-NYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIM 622 (754)
Q Consensus 544 At~~peinsL~~~~~~-N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tL 622 (754)
||.++.+..-+.+.+. +.+ .+.+... ..+++.. ...... .+.. .++..+......++|
T Consensus 182 AT~~~~~~~~i~~~l~~~~~-~~~~~~~-------~r~~l~~--~v~~~~-------~~~~----~l~~~l~~~~~~~~I 240 (523)
T 1oyw_A 182 ATADDTTRQDIVRLLGLNDP-LIQISSF-------DRPNIRY--MLMEKF-------KPLD----QLMRYVQEQRGKSGI 240 (523)
T ss_dssp SCCCHHHHHHHHHHHTCCSC-EEEECCC-------CCTTEEE--EEEECS-------SHHH----HHHHHHHHTTTCCEE
T ss_pred CCCCHHHHHHHHHHhCCCCC-eEEeCCC-------CCCceEE--EEEeCC-------CHHH----HHHHHHHhcCCCcEE
Confidence 9999987654433332 222 2222111 1123322 222211 1222 233334444557899
Q ss_pred EEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCC
Q 004428 623 LFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKE 702 (754)
Q Consensus 623 IFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pe 702 (754)
|||+|......+...|++.++.+..+|+.+++.+|.++...|++|+.+|||+|+.+. +|+|+++|+.||+|++|.+++
T Consensus 241 Vf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~--~GiD~p~v~~VI~~~~p~s~~ 318 (523)
T 1oyw_A 241 IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG--MGINKPNVRFVVHFDIPRNIE 318 (523)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSC--TTTCCTTCCEEEESSCCSSHH
T ss_pred EEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh--CCCCccCccEEEEECCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999988 999999999999999999999
Q ss_pred chhhhccccCCCC-CceEEEEechhcHHHHHHHhC
Q 004428 703 FYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVG 736 (754)
Q Consensus 703 fY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVG 736 (754)
.|.+++||+||.+ .|.|+.||+..|...+..++.
T Consensus 319 ~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 319 SYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp HHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 9999999999988 689999999999877766654
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.6e-33 Score=321.43 Aligned_cols=352 Identities=14% Similarity=0.123 Sum_probs=202.7
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
.|+.. |+|+|.++++.+++++|++++++|| +|||.+|++++++++.+.+.
T Consensus 9 ~g~~~-lr~~Q~~~i~~~l~g~~~iv~~~TG---------sGKTl~~~~~i~~~l~~~~~-------------------- 58 (696)
T 2ykg_A 9 YSPFK-PRNYQLELALPAMKGKNTIICAPTG---------CGKTFVSLLICEHHLKKFPQ-------------------- 58 (696)
T ss_dssp TC--C-CCHHHHHHHHHHHTTCCEEEECCTT---------SSHHHHHHHHHHHHHHHSCT--------------------
T ss_pred cCCCC-ccHHHHHHHHHHHcCCCEEEEcCCC---------chHHHHHHHHHHHHHHhCcc--------------------
Confidence 46665 8999999999999999999999998 89999999999999865411
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
| ..+++|||+|||+||.|+++.+.++++... .+....+|+...
T Consensus 59 ---------~-~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~-------~~v~~~~g~~~~-------------------- 101 (696)
T 2ykg_A 59 ---------G-QKGKVVFFANQIPVYEQNKSVFSKYFERHG-------YRVTGISGATAE-------------------- 101 (696)
T ss_dssp ---------T-CCCCEEEECSSHHHHHHHHHHHHHHTTTTT-------CCEEEECSSSCS--------------------
T ss_pred ---------C-CCCeEEEEECCHHHHHHHHHHHHHHhccCC-------ceEEEEeCCccc--------------------
Confidence 1 236899999999999999999999975431 122223333210
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcc-cCCceeEEEEec
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVD-YLSSIEVLIIDH 490 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~d-fLSSIEiLVlDe 490 (754)
......+ . .++||||+||++|...+.. +.. .|+.+.+|||||
T Consensus 102 -------------------------~~~~~~~--~---~~~~Iiv~Tp~~L~~~l~~-------~~~~~l~~~~~vViDE 144 (696)
T 2ykg_A 102 -------------------------NVPVEQI--V---ENNDIIILTPQILVNNLKK-------GTIPSLSIFTLMIFDE 144 (696)
T ss_dssp -------------------------SSCHHHH--H---HTCSEEEECHHHHHHHHHT-------TSSCCGGGCSEEEEET
T ss_pred -------------------------cccHHHh--c---cCCCEEEECHHHHHHHHhc-------CcccccccccEEEEeC
Confidence 0111122 1 2589999999999999872 233 589999999999
Q ss_pred chhhhhcCchHHHHHHHH-hccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC-------HH-HHHHHHHhhcCC
Q 004428 491 ADIILMQNWSWLIEVVEQ-LNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN-------PE-INAFFNHHCANY 561 (754)
Q Consensus 491 AD~mLmQNw~hv~~Il~~-Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~-------pe-insL~~~~~~N~ 561 (754)
||.+. ++.....++.. +... +........|.|++|||.. .+ ++.++ ..|.+.
T Consensus 145 aH~~~--~~~~~~~i~~~~l~~~----------------~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~-~~~~~l 205 (696)
T 2ykg_A 145 CHNTS--KQHPYNMIMFNYLDQK----------------LGGSSGPLPQVIGLTASVGVGDAKTTDEALDYIC-KLCASL 205 (696)
T ss_dssp GGGCS--TTCHHHHHHHHHHHHH----------------HTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHH-HHHHHT
T ss_pred CCccc--CcccHHHHHHHHHHHh----------------hcccCCCCCeEEEEeCccccCccccHHHHHHHHH-HHHHhc
Confidence 99988 33333433321 1110 0011123478999999997 33 34443 333321
Q ss_pred CceEEEe-e--------------------cc--cC----ccccccccee-------------------------------
Q 004428 562 QGKVKLA-C--------------------EY--KG----VLPKVLLNVR------------------------------- 583 (754)
Q Consensus 562 ~G~Vkv~-~--------------------~~--~g----~i~~v~~~I~------------------------------- 583 (754)
...+... . .. .. .+..+...+.
T Consensus 206 ~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (696)
T 2ykg_A 206 DASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIV 285 (696)
T ss_dssp TCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHH
T ss_pred CCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHH
Confidence 1111000 0 00 00 0000000000
Q ss_pred ---------EEEEE---------------------------------------------eccCcccc-------------
Q 004428 584 ---------QIYER---------------------------------------------FNADSIAK------------- 596 (754)
Q Consensus 584 ---------Q~f~r---------------------------------------------~~~~s~~~------------- 596 (754)
+.-.. +.......
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (696)
T 2ykg_A 286 TVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL 365 (696)
T ss_dssp HHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTH
T ss_pred HHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 00000 00000000
Q ss_pred -----------hhHHHHHHHHHHHhHHhh-hcCCCcEEEEecchhcHHHHHHHHHhCC----CceEeec--------CCC
Q 004428 597 -----------ADDARLEYFTKKVFPKIK-DSIQGGIMLFLSSYFEFVRLRNFLKSQN----ASFCLLG--------DYT 652 (754)
Q Consensus 597 -----------~~d~Rf~yF~~~iLp~l~-~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~----~~f~~Ih--------ey~ 652 (754)
....++..+.. +|.... .....++||||++...+..|..+|+..+ +++..+| +.+
T Consensus 366 ~~l~~~~~~~~~~~~k~~~L~~-ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~ 444 (696)
T 2ykg_A 366 QELESVSRDPSNENPKLEDLCF-ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 444 (696)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHH-HHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-------------
T ss_pred HHHHHHhcCCCCCCHHHHHHHH-HHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCC
Confidence 01122222221 222111 1245789999999999999999999988 8999994 599
Q ss_pred CHHHHHHHHHHHhc-CCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechhcHHH
Q 004428 653 EPSDISRARVWFFE-GKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRFDMLR 730 (754)
Q Consensus 653 sq~~r~rar~~F~~-G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~D~~~ 730 (754)
++.+|.++...|++ |+++|||+|+++. +|+||++|++||+||+|.+++-|.||+|| ||...|.|+.|+++.|...
T Consensus 445 ~~~eR~~v~~~F~~~g~~~vLVaT~v~~--~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 445 TLPAQKCILDAFKASGDHNILIATSVAD--EGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIE 520 (696)
T ss_dssp ----------------CCSCSEEEESSC--CC---CCCSEEEEESCC--CCCC----------CCCEEEEEESCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCccEEEEechhh--cCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcCCCceEEEEecCCCHHH
Confidence 99999999999998 9999999999999 99999999999999999999999999999 9998899999999887633
No 25
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=6.9e-34 Score=346.56 Aligned_cols=294 Identities=15% Similarity=0.125 Sum_probs=207.7
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
.|+ . |||+|++++|.+++++|++++++|| +|||.+|+++++..+.
T Consensus 75 ~gf-~-pt~iQ~~ai~~il~g~dvlv~ApTG---------SGKTl~~l~~il~~~~------------------------ 119 (1104)
T 4ddu_A 75 FGK-D-LTGYQRLWAKRIVQGKSFTMVAPTG---------VGKTTFGMMTALWLAR------------------------ 119 (1104)
T ss_dssp SSS-C-CCHHHHHHHHHHTTTCCEEECCSTT---------CCHHHHHHHHHHHHHT------------------------
T ss_pred cCC-C-CCHHHHHHHHHHHcCCCEEEEeCCC---------CcHHHHHHHHHHHHHh------------------------
Confidence 466 3 8999999999999999999999998 8999988888777661
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
..++||||+|||+||.|+++.+.+++ ... + +....+|+...
T Consensus 120 -----------~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~-i------~v~~l~Gg~~~-------------------- 160 (1104)
T 4ddu_A 120 -----------KGKKSALVFPTVTLVKQTLERLQKLA-DEK-V------KIFGFYSSMKK-------------------- 160 (1104)
T ss_dssp -----------TTCCEEEEESSHHHHHHHHHHHHTTS-CTT-S------CEEEECTTCCT--------------------
T ss_pred -----------cCCeEEEEechHHHHHHHHHHHHHhh-CCC-C------eEEEEeCCCCH--------------------
Confidence 13689999999999999999999976 211 1 22223333210
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
+-..+.+..... ..+|||||||++|.+++.. ..++.+.+||||||
T Consensus 161 -------------------------~er~~~~~~l~~-g~~~IlV~Tp~rL~~~l~~---------l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 161 -------------------------EEKEKFEKSFEE-DDYHILVFSTQFVSKNREK---------LSQKRFDFVFVDDV 205 (1104)
T ss_dssp -------------------------THHHHHHHHHHT-SCCSEEEEEHHHHHHSHHH---------HHTSCCSEEEESCH
T ss_pred -------------------------HHHHHHHHHHhC-CCCCEEEECHHHHHHHHHh---------hcccCcCEEEEeCC
Confidence 001112222221 2489999999999988762 34789999999999
Q ss_pred ----------hhhh--hcCchH-HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCC-CCHHHHHHHHHh
Q 004428 492 ----------DIIL--MQNWSW-LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYH-PNPEINAFFNHH 557 (754)
Q Consensus 492 ----------D~mL--mQNw~h-v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt-~~peinsL~~~~ 557 (754)
|+|| |++... +..|++.+... . ++.+++ .+..+|+|+|||| .+..+...+.+.
T Consensus 206 H~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~-~-----~~~~~~-------~~~~~q~ll~SAT~~p~~~~~~~~~~ 272 (1104)
T 4ddu_A 206 DAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQG-K-----IYERPK-------NLKPGILVVSSATAKPRGIRPLLFRD 272 (1104)
T ss_dssp HHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHT-S-----CCCCCS-------SCCCCEEEEECBSSCCCSSTTHHHHH
T ss_pred CccccccccchhhhHhcCCCHHHHHHHHHhcccc-h-----hhhhhc-------cCCCceEEEEcCCCCcHHHHHHHhhc
Confidence 6776 455556 77788776410 0 000100 1134899999999 555555333222
Q ss_pred hcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHH
Q 004428 558 CANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNF 637 (754)
Q Consensus 558 ~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~ 637 (754)
... +.+... ......+.|.+..++. ...+. .+|.. ..+++||||++...+.+|..+
T Consensus 273 ~l~----i~v~~~-----~~~~~~i~~~~~~~~k-------~~~L~----~ll~~----~~~~~LVF~~s~~~a~~l~~~ 328 (1104)
T 4ddu_A 273 LLN----FTVGRL-----VSVARNITHVRISSRS-------KEKLV----ELLEI----FRDGILIFAQTEEEGKELYEY 328 (1104)
T ss_dssp HTC----CCCCBC-----CCCCCCEEEEEESCCC-------HHHHH----HHHHH----HCSSEEEEESSSHHHHHHHHH
T ss_pred cee----EEeccC-----CCCcCCceeEEEecCH-------HHHHH----HHHHh----cCCCEEEEECcHHHHHHHHHH
Confidence 222 222111 1234568887765421 11211 22222 248999999999999999999
Q ss_pred HHhCCCceE-eecCCCCHHHHHHHHHHHhcCCccEEEE----cccccccCccccCC-CCeEEEccCCC
Q 004428 638 LKSQNASFC-LLGDYTEPSDISRARVWFFEGKRKMILY----TERSHFYHRYKIRG-IQNLIIYSLPE 699 (754)
Q Consensus 638 Lk~~~~~f~-~Ihey~sq~~r~rar~~F~~G~~~ILL~----TErahffRr~dIkg-V~~VIfY~lP~ 699 (754)
|+..++.+. .+|+ +|.+ +..|++|+++|||+ |++++ ||+||++ |++|||||+|.
T Consensus 329 L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~Tdvla--rGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 329 LKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLT--RGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHC--CSCCCTTTCCEEEEESCCE
T ss_pred HHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeE--ecCcCCCCCCEEEEECCCC
Confidence 999999998 9999 3555 99999999999999 99999 9999999 99999999999
No 26
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.5e-34 Score=347.94 Aligned_cols=312 Identities=9% Similarity=0.085 Sum_probs=214.9
Q ss_pred cCCCCCCHHH-HHHHHHHhhh-CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 232 YSDYGLKPKL-YKHWLDIYNK-SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 232 f~~l~L~~~L-~~~~~~~~~~-~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
+..+++.+.+ .+.+.+.+.+ .|+. | |+|+++||.+++++|++++++|| +|||. |+||++.++...
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~g~~--p-~iQ~~ai~~il~g~dvlv~apTG---------SGKTl-~~lp~l~~~~~~ 98 (1054)
T 1gku_B 32 ASLCLFPEDFLLKEFVEFFRKCVGEP--R-AIQKMWAKRILRKESFAATAPTG---------VGKTS-FGLAMSLFLALK 98 (1054)
T ss_dssp CCCSCCTTHHHHHHHHHHHHTTTCSC--C-HHHHHHHHHHHTTCCEECCCCBT---------SCSHH-HHHHHHHHHHTT
T ss_pred ccccccccccchHHHHHHHHHhcCCC--H-HHHHHHHHHHHhCCCEEEEcCCC---------CCHHH-HHHHHHHHHhhc
Confidence 3344454443 2334443333 5765 7 99999999999999999999998 89997 999999988531
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
.+++|||+|||+||.|+.+.+.+++.... +....+....+|+.
T Consensus 99 ----------------------------------~~~~lil~PtreLa~Q~~~~l~~l~~~~~---i~~~~~v~~~~Gg~ 141 (1054)
T 1gku_B 99 ----------------------------------GKRCYVIFPTSLLVIQAAETIRKYAEKAG---VGTENLIGYYHGRI 141 (1054)
T ss_dssp ----------------------------------SCCEEEEESCHHHHHHHHHHHHHHHTTTC---CSGGGSEEECCSSC
T ss_pred ----------------------------------CCeEEEEeccHHHHHHHHHHHHHHHhhcC---CCccceEEEEeCCC
Confidence 36899999999999999999999875432 10001222223322
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccH--HHHhhhcccCCCCEEEeCchhHHHHHh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTR--KSIKLYNDFYTSDMIVASPINLHQKMT 467 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~tr--k~lkLys~Fy~sDIIVASPlgLr~lI~ 467 (754)
.... ..++.+. ++|||||||++|.+++.
T Consensus 142 -----------------------------------------------~~~~~~~~~~~l~---~~~IlV~TP~~L~~~l~ 171 (1054)
T 1gku_B 142 -----------------------------------------------PKREKENFMQNLR---NFKIVITTTQFLSKHYR 171 (1054)
T ss_dssp -----------------------------------------------CSHHHHHHHHSGG---GCSEEEEEHHHHHHCST
T ss_pred -----------------------------------------------ChhhHHHHHhhcc---CCCEEEEcHHHHHHHHH
Confidence 1111 1233333 28999999999999875
Q ss_pred hhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
+ |+.+.+|||||||.|+. +..++..++..+...+.- ..+. ....+|+++||||.+
T Consensus 172 -------~----L~~l~~lViDEah~~l~-~~~~~~~i~~~lgf~~~~---------~~~~----~~~~~q~~l~SAT~t 226 (1054)
T 1gku_B 172 -------E----LGHFDFIFVDDVDAILK-ASKNVDKLLHLLGFHYDL---------KTKS----WVGEARGCLMVSTAT 226 (1054)
T ss_dssp -------T----SCCCSEEEESCHHHHHT-STHHHHHHHHHTTEEEET---------TTTE----EEECCSSEEEECCCC
T ss_pred -------H----hccCCEEEEeChhhhhh-ccccHHHHHHHhCcchhh---------hhhh----cccCCceEEEEecCC
Confidence 1 78999999999999986 235677777766432210 0011 123489999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
+. ..+...++.++. .+.+... ......|.|.+. +. . +.. .|..+.....+++||||++
T Consensus 227 ~~-~~~~~~~~~~~~-~i~v~~~-----~~~~~~i~~~~~--~~-~-------k~~-----~L~~ll~~~~~~~LVF~~t 284 (1054)
T 1gku_B 227 AK-KGKKAELFRQLL-NFDIGSS-----RITVRNVEDVAV--ND-E-------SIS-----TLSSILEKLGTGGIIYART 284 (1054)
T ss_dssp SC-CCTTHHHHHHHH-CCCCSCC-----EECCCCEEEEEE--SC-C-------CTT-----TTHHHHTTSCSCEEEEESS
T ss_pred Cc-hhHHHHHhhcce-EEEccCc-----ccCcCCceEEEe--ch-h-------HHH-----HHHHHHhhcCCCEEEEEcC
Confidence 98 644444444421 1222111 123446777666 21 1 111 2223333335789999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEE----cccccccCccccCCC-CeEEEccCC
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILY----TERSHFYHRYKIRGI-QNLIIYSLP 698 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~----TErahffRr~dIkgV-~~VIfY~lP 698 (754)
...+.+|..+|+.. +++..+|+.+ .+++..|++|+.+|||+ |+++. ||+||++| ++||+|++|
T Consensus 285 ~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~--rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 285 GEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLV--RGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp HHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC--------CCSCCTTTCCEEEEESCC
T ss_pred HHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeE--eccccCCcccEEEEeCCC
Confidence 99999999999988 9999999987 37889999999999999 99999 99999995 999999999
No 27
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=343.89 Aligned_cols=348 Identities=11% Similarity=0.051 Sum_probs=242.8
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
..|..+++.+.+...+.. .++.. |||+|+++++.+++++|+++++.|| +|||.+|+++++.++..
T Consensus 162 ~~~~~~~l~~~~~~~~~~----~~~f~-ltp~Q~~AI~~i~~g~dvLV~ApTG---------SGKTlva~l~i~~~l~~- 226 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEAR----TYPFT-LDPFQDTAISCIDRGESVLVSAHTS---------AGKTVVAEYAIAQSLKN- 226 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSS----CCSSC-CCHHHHHHHHHHTTTCCEEEECCSS---------SHHHHHHHHHHHHHHHT-
T ss_pred CCcccCCCChhhhHHHHH----hCCCC-CCHHHHHHHHHHHcCCCEEEECCCC---------CChHHHHHHHHHHHHhc-
Confidence 346666666665544422 23333 7999999999999999999999998 89999999999998731
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
.++||||+|||+||.|+.+.+.++.+...
T Consensus 227 ----------------------------------g~rvlvl~PtraLa~Q~~~~l~~~~~~Vg----------------- 255 (1108)
T 3l9o_A 227 ----------------------------------KQRVIYTSPIKALSNQKYRELLAEFGDVG----------------- 255 (1108)
T ss_dssp ----------------------------------TCEEEEEESSHHHHHHHHHHHHHHTSSEE-----------------
T ss_pred ----------------------------------CCeEEEEcCcHHHHHHHHHHHHHHhCCcc-----------------
Confidence 25899999999999999999998764211
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
++.|. +.+. .+++|||+||++|+.++..
T Consensus 256 ---------------------------------lltGd--------~~~~----------~~~~IlV~Tpe~L~~~L~~- 283 (1108)
T 3l9o_A 256 ---------------------------------LMTGD--------ITIN----------PDAGCLVMTTEILRSMLYR- 283 (1108)
T ss_dssp ---------------------------------EECSS--------CBCC----------CSCSEEEEEHHHHHHHHHH-
T ss_pred ---------------------------------EEeCc--------cccC----------CCCCEEEeChHHHHHHHHc-
Confidence 01110 1111 2589999999999998873
Q ss_pred hcccccCcccCCceeEEEEecchhhhhcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIILMQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
+..+|+.+.+|||||||+|+...+ ..+..|+.. +|.. +|+|+||||++.
T Consensus 284 ------~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~---l~~~---------------------~qvl~lSATipn 333 (1108)
T 3l9o_A 284 ------GSEVMREVAWVIFDEVHYMRDKERGVVWEETIIL---LPDK---------------------VRYVFLSATIPN 333 (1108)
T ss_dssp ------CSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHH---SCTT---------------------SEEEEEECSCSS
T ss_pred ------CccccccCCEEEEhhhhhccccchHHHHHHHHHh---cCCC---------------------ceEEEEcCCCCC
Confidence 345689999999999999984322 234444444 4543 899999999874
Q ss_pred --HHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEE---------EeccCcccchhH------------------
Q 004428 549 --EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYE---------RFNADSIAKADD------------------ 599 (754)
Q Consensus 549 --einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~---------r~~~~s~~~~~d------------------ 599 (754)
++..++.....++. .|...... ...+++.+. .++.........
T Consensus 334 ~~e~a~~l~~~~~~~~-~vi~~~~r-------p~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (1108)
T 3l9o_A 334 AMEFAEWICKIHSQPC-HIVYTNFR-------PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNS 405 (1108)
T ss_dssp CHHHHHHHHHHTCSCE-EEEEECCC-------SSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----------
T ss_pred HHHHHHHHHhhcCCCe-EEEecCCC-------cccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccc
Confidence 46666665544432 22211110 111222221 111110000000
Q ss_pred ---------------HH--HHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCc------------------
Q 004428 600 ---------------AR--LEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNAS------------------ 644 (754)
Q Consensus 600 ---------------~R--f~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~------------------ 644 (754)
.+ ..--+..++..+......++||||++...+..+...|...++.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~ 485 (1108)
T 3l9o_A 406 TDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIAL 485 (1108)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTH
T ss_pred cccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhh
Confidence 00 0001113444444556679999999999999999998654333
Q ss_pred ---------------------eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCc
Q 004428 645 ---------------------FCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEF 703 (754)
Q Consensus 645 ---------------------f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pef 703 (754)
++.+|+.+++.+|..+...|++|.++|||||++++ +|+||++|++||+|+.|-++.-
T Consensus 486 l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla--~GIDiP~v~~VI~~~~~~d~~~ 563 (1108)
T 3l9o_A 486 LPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFS--IGLNMPAKTVVFTSVRKWDGQQ 563 (1108)
T ss_dssp HHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCC--SCCCC--CEEEESCSEEESSSC
T ss_pred cchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHh--cCCCCCCceEEEecCcccCccc
Confidence 68899999999999999999999999999999999 9999999999999998766664
Q ss_pred --------hhhhccccCCCC---CceEEEEechh-cHHHHHHHh
Q 004428 704 --------YPEIVNMLEGSH---NMTCTVLFSRF-DMLRLERIV 735 (754)
Q Consensus 704 --------Y~erigrt~ra~---~g~~~~L~sk~-D~~~LErIV 735 (754)
|.||+||+||.+ .|.|+.|++.. +...+.+++
T Consensus 564 ~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~ 607 (1108)
T 3l9o_A 564 FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 607 (1108)
T ss_dssp EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHH
T ss_pred cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHh
Confidence 999999999987 68899998765 444455444
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.1e-32 Score=320.16 Aligned_cols=110 Identities=9% Similarity=0.074 Sum_probs=65.6
Q ss_pred cCCCcEEEEecchhcHHHHHHHHHhC------------CCceEeecCCCCHHHHHHHHHHHhc-CCccEEEEcccccccC
Q 004428 616 SIQGGIMLFLSSYFEFVRLRNFLKSQ------------NASFCLLGDYTEPSDISRARVWFFE-GKRKMILYTERSHFYH 682 (754)
Q Consensus 616 ~~~~~tLIFv~Sy~d~vrlrn~Lk~~------------~~~f~~Ihey~sq~~r~rar~~F~~-G~~~ILL~TErahffR 682 (754)
....++||||++......|..+|+.. |.....+|+.+++.+|.+++..|++ |+++|||+|+++. +
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~--~ 706 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVAD--E 706 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchh--c
Confidence 45689999999999999999999874 5566677888999999999999999 9999999999999 9
Q ss_pred ccccCCCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechhcH
Q 004428 683 RYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRFDM 728 (754)
Q Consensus 683 r~dIkgV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~D~ 728 (754)
|+||++|++||+|++|.+|.-|.||+|| ||...|.|+.|+++.+.
T Consensus 707 GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 707 GIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (797)
T ss_dssp ----CCCSEEEEESCCSCHHHHHTC--------CCCEEEEECCHHH
T ss_pred CCCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCceEEEEEeCCcH
Confidence 9999999999999999999999999999 99988999999998765
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=3.2e-30 Score=276.57 Aligned_cols=332 Identities=13% Similarity=0.121 Sum_probs=229.9
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|.|.|+++++.++++ +++.++.|| +|||.+++++++.++.+.
T Consensus 10 l~~~Q~~~i~~~~~~-~~ll~~~tG---------~GKT~~~~~~~~~~~~~~---------------------------- 51 (494)
T 1wp9_A 10 PRIYQEVIYAKCKET-NCLIVLPTG---------LGKTLIAMMIAEYRLTKY---------------------------- 51 (494)
T ss_dssp CCHHHHHHHHHGGGS-CEEEECCTT---------SCHHHHHHHHHHHHHHHS----------------------------
T ss_pred ccHHHHHHHHHHhhC-CEEEEcCCC---------CCHHHHHHHHHHHHHhcC----------------------------
Confidence 689999999999999 999999998 899999999999987511
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
.+++|||+|||+||.|+.+.+.++..... .++....|+.
T Consensus 52 ------~~~~liv~P~~~L~~q~~~~~~~~~~~~~-------~~v~~~~g~~---------------------------- 90 (494)
T 1wp9_A 52 ------GGKVLMLAPTKPLVLQHAESFRRLFNLPP-------EKIVALTGEK---------------------------- 90 (494)
T ss_dssp ------CSCEEEECSSHHHHHHHHHHHHHHBCSCG-------GGEEEECSCS----------------------------
T ss_pred ------CCeEEEEECCHHHHHHHHHHHHHHhCcch-------hheEEeeCCc----------------------------
Confidence 35799999999999999999999863210 0111112211
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhh-h
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL-M 496 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-m 496 (754)
.. ....+++ ..++|||+||..|...+.. ....+..+.++||||||.+. .
T Consensus 91 -------------------~~-~~~~~~~---~~~~ivv~T~~~l~~~~~~-------~~~~~~~~~~vIiDEaH~~~~~ 140 (494)
T 1wp9_A 91 -------------------SP-EERSKAW---ARAKVIVATPQTIENDLLA-------GRISLEDVSLIVFDEAHRAVGN 140 (494)
T ss_dssp -------------------CH-HHHHHHH---HHCSEEEECHHHHHHHHHT-------TSCCTTSCSEEEEETGGGCSTT
T ss_pred -------------------ch-hhhhhhc---cCCCEEEecHHHHHHHHhc-------CCcchhhceEEEEECCcccCCC
Confidence 00 1112222 2589999999999998762 33458899999999999997 3
Q ss_pred cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC---HHHHHHHHHhhcCCCceEEEeecccC
Q 004428 497 QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN---PEINAFFNHHCANYQGKVKLACEYKG 573 (754)
Q Consensus 497 QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~---peinsL~~~~~~N~~G~Vkv~~~~~g 573 (754)
.+|..+...+.. .++ .++.|++|||.. .++..++..... ..+.+......
T Consensus 141 ~~~~~~~~~~~~---~~~---------------------~~~~l~lTaTp~~~~~~~~~l~~~l~~---~~~~~~~~~~~ 193 (494)
T 1wp9_A 141 YAYVFIAREYKR---QAK---------------------NPLVIGLTASPGSTPEKIMEVINNLGI---EHIEYRSENSP 193 (494)
T ss_dssp CHHHHHHHHHHH---HCS---------------------SCCEEEEESCSCSSHHHHHHHHHHTTC---CEEEECCTTST
T ss_pred CcHHHHHHHHHh---cCC---------------------CCeEEEEecCCCCCcHHHHHHHHhcCh---heeeccCCCcH
Confidence 344444433332 222 278999999997 346666654321 11222111100
Q ss_pred cccccccceeEEEEEeccCcccc---------------------------------------------------------
Q 004428 574 VLPKVLLNVRQIYERFNADSIAK--------------------------------------------------------- 596 (754)
Q Consensus 574 ~i~~v~~~I~Q~f~r~~~~s~~~--------------------------------------------------------- 596 (754)
.+........-.+..+..+....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (494)
T 1wp9_A 194 DVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLL 273 (494)
T ss_dssp TTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHH
T ss_pred HHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHH
Confidence 00000011111111111000000
Q ss_pred ------------------------------------------------------------------hhHHHHHHHHHHHh
Q 004428 597 ------------------------------------------------------------------ADDARLEYFTKKVF 610 (754)
Q Consensus 597 ------------------------------------------------------------------~~d~Rf~yF~~~iL 610 (754)
....++..+. .+|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~-~~l 352 (494)
T 1wp9_A 274 LYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLK-EII 352 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHH-HHH
Confidence 0011222211 122
Q ss_pred HHhh-hcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecC--------CCCHHHHHHHHHHHhcCCccEEEEccccccc
Q 004428 611 PKIK-DSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGD--------YTEPSDISRARVWFFEGKRKMILYTERSHFY 681 (754)
Q Consensus 611 p~l~-~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihe--------y~sq~~r~rar~~F~~G~~~ILL~TErahff 681 (754)
..+. .....++||||++......|..+|+..++.+..+|| .+++.+|.+++..|++|+++|||+|+.+.
T Consensus 353 ~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~-- 430 (494)
T 1wp9_A 353 REQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGE-- 430 (494)
T ss_dssp HHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGG--
T ss_pred HHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccc--
Confidence 2221 135689999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CccccCCCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechhcH
Q 004428 682 HRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRFDM 728 (754)
Q Consensus 682 Rr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~D~ 728 (754)
+|+||+++++||+|++|.+|..|.+|+||++|.+.|.|+.|+++.+.
T Consensus 431 ~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~ 477 (494)
T 1wp9_A 431 EGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTR 477 (494)
T ss_dssp GGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEETTSH
T ss_pred cCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCCceEEEEEecCCH
Confidence 99999999999999999999999999999999999999999998754
No 30
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.98 E-value=3.1e-31 Score=318.68 Aligned_cols=109 Identities=9% Similarity=0.072 Sum_probs=66.1
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhC------------CCceEeecCCCCHHHHHHHHHHHhc-CCccEEEEcccccccCc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQ------------NASFCLLGDYTEPSDISRARVWFFE-GKRKMILYTERSHFYHR 683 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~------------~~~f~~Ihey~sq~~r~rar~~F~~-G~~~ILL~TErahffRr 683 (754)
...++||||++......|..+|++. |..+..+|+.+++.+|.+++..|++ |+++|||+|+++. +|
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~--eG 707 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVAD--EG 707 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchh--cC
Confidence 4589999999999999999999987 5566667888999999999999999 9999999999999 99
Q ss_pred cccCCCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechhcH
Q 004428 684 YKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRFDM 728 (754)
Q Consensus 684 ~dIkgV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~D~ 728 (754)
+||++|++||+||+|.++.-|.||+|| ||...|.|+.|+++.+.
T Consensus 708 IDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 708 IDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (936)
T ss_dssp --CCCCSEEEEESCCSCSHHHHCC--------CCCEEEEESCHHH
T ss_pred CcchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCCEEEEEEeCCCH
Confidence 999999999999999999999999999 99988999999987654
No 31
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.97 E-value=2.9e-32 Score=314.68 Aligned_cols=310 Identities=12% Similarity=0.076 Sum_probs=219.8
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccc
Q 004428 235 YGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVT 314 (754)
Q Consensus 235 l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~ 314 (754)
+++++.+++++.. .. ..|||+|++++|.+++++|++++++|| +|||.+|++|+|+++++.
T Consensus 155 l~~~~~~~~~l~~-----~~-~~~lpiq~~~i~~l~~g~dvlv~a~TG---------SGKT~~~~lpil~~l~~~----- 214 (618)
T 2whx_A 155 VTKSGDYVSAITQ-----AE-RIGEPDYEVDEDIFRKKRLTIMDLHPG---------AGKTKRILPSIVREALKR----- 214 (618)
T ss_dssp -------CEECBC-----CC-CCCCCCCCCCGGGGSTTCEEEECCCTT---------SSTTTTHHHHHHHHHHHT-----
T ss_pred ccchHHHHHHHhh-----cc-ccCCCccccCHHHHhcCCeEEEEcCCC---------CCHHHHHHHHHHHHHHhC-----
Confidence 5566665554433 12 348999999999999999999999998 899999999999998641
Q ss_pred cchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccC
Q 004428 315 KNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEED 394 (754)
Q Consensus 315 knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~ 394 (754)
.+++|||+|||+||.|+.+.+..+. + + |...
T Consensus 215 -----------------------------~~~vLvl~PtreLa~Qi~~~l~~~~-------v----~----~~~~----- 245 (618)
T 2whx_A 215 -----------------------------RLRTLILAPTRVVAAEMEEALRGLP-------I----R----YQTP----- 245 (618)
T ss_dssp -----------------------------TCCEEEEESSHHHHHHHHHHTTTSC-------E----E----ECCT-----
T ss_pred -----------------------------CCeEEEEcChHHHHHHHHHHhcCCc-------e----e----Eecc-----
Confidence 3689999999999999998765211 1 0 1100
Q ss_pred cccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccc
Q 004428 395 KDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKE 474 (754)
Q Consensus 395 ~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~ 474 (754)
.+.... -.+..|.++|.+.|...+-.
T Consensus 246 -----------------------------------------------~l~~~~-tp~~~i~~~t~~~l~~~l~~------ 271 (618)
T 2whx_A 246 -----------------------------------------------AVKSDH-TGREIVDLMCHATFTTRLLS------ 271 (618)
T ss_dssp -----------------------------------------------TSSCCC-CSSSCEEEEEHHHHHHHHHH------
T ss_pred -----------------------------------------------cceecc-CCCceEEEEChHHHHHHHhc------
Confidence 000000 01234555666666544431
Q ss_pred cCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHH
Q 004428 475 QDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFF 554 (754)
Q Consensus 475 rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~ 554 (754)
+ ..|+.+.++||||||+|-|.+...+..|+..+.. | .+|+|+||||+++.+..++
T Consensus 272 -~-~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~-~----------------------~~q~il~SAT~~~~~~~~~ 326 (618)
T 2whx_A 272 -S-TRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEM-G----------------------EAAAIFMTATPPGSTDPFP 326 (618)
T ss_dssp -C-SSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHH-T----------------------SCEEEEECSSCTTCCCSSC
T ss_pred -c-ccccCCeEEEEECCCCCCccHHHHHHHHHHHhcc-c----------------------CccEEEEECCCchhhhhhh
Confidence 1 3589999999999999977766677777766521 1 2899999999998754332
Q ss_pred HHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHH
Q 004428 555 NHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRL 634 (754)
Q Consensus 555 ~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrl 634 (754)
. .|+ -.+.+... ++... +. .++..+.. ..+++||||+|...+.+|
T Consensus 327 ~---~~~-~~~~v~~~------------------~~~~~--------~~----~ll~~l~~-~~~~~LVF~~s~~~a~~l 371 (618)
T 2whx_A 327 Q---SNS-PIEDIERE------------------IPERS--------WN----TGFDWITD-YQGKTVWFVPSIKAGNDI 371 (618)
T ss_dssp C---CSS-CEEEEECC------------------CCSSC--------CS----SSCHHHHH-CCSCEEEECSSHHHHHHH
T ss_pred c---cCC-ceeeeccc------------------CCHHH--------HH----HHHHHHHh-CCCCEEEEECChhHHHHH
Confidence 2 121 12222111 01000 00 12222322 357999999999999999
Q ss_pred HHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeE--------------------EE
Q 004428 635 RNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNL--------------------II 694 (754)
Q Consensus 635 rn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~V--------------------If 694 (754)
...|++.++++..+|+ .+|.+++..|++|+.+||||||++. ||+||+ |++| |+
T Consensus 372 ~~~L~~~g~~v~~lhg----~~R~~~l~~F~~g~~~VLVaTdv~~--rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~ 444 (618)
T 2whx_A 372 ANCLRKSGKRVIQLSR----KTFDTEYPKTKLTDWDFVVTTDISE--MGANFR-AGRVIDPRRCLKPVILTDGPERVILA 444 (618)
T ss_dssp HHHHHHTTCCEEEECT----TTHHHHTTHHHHSCCSEEEECGGGG--TTCCCC-CSEEEECCEEEEEEEECSSSCEEEEE
T ss_pred HHHHHHcCCcEEEECh----HHHHHHHHhhcCCCcEEEEECcHHH--cCcccC-ceEEEECcceecceecccCCCceEEc
Confidence 9999999999999998 3788899999999999999999999 999996 9998 77
Q ss_pred ccCCCCCCchhhhccccCCCC--CceEEEEec---hhcH---HHHHHH
Q 004428 695 YSLPERKEFYPEIVNMLEGSH--NMTCTVLFS---RFDM---LRLERI 734 (754)
Q Consensus 695 Y~lP~~pefY~erigrt~ra~--~g~~~~L~s---k~D~---~~LErI 734 (754)
|++|.++..|.||+||+||++ .|.|++|++ ..|. ..||+.
T Consensus 445 ~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~ 492 (618)
T 2whx_A 445 GPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAK 492 (618)
T ss_dssp EEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHH
T ss_pred ccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhH
Confidence 888999999999999999986 789999998 5654 445543
No 32
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.97 E-value=3.7e-30 Score=299.21 Aligned_cols=338 Identities=11% Similarity=0.037 Sum_probs=239.8
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhh-hhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSL-CNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIF 307 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~-i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ 307 (754)
.++|++++|++.+.+.+.+. |+.. ++|+|.++|+. +.++++++++++|| +|||.+|.+++++++.
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~----g~~~-l~~~Q~~~i~~~~~~~~~~lv~apTG---------sGKT~~~~l~il~~~~ 72 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKR----GIKK-LNPPQTEAVKKGLLEGNRLLLTSPTG---------SGKTLIAEMGIISFLL 72 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTT----SCCB-CCHHHHHHHHTTTTTTCCEEEECCTT---------SCHHHHHHHHHHHHHH
T ss_pred cCcHHHcCCCHHHHHHHHhC----CCCC-CCHHHHHHHHHHhcCCCcEEEEcCCC---------CcHHHHHHHHHHHHHH
Confidence 35799999999999888763 7765 79999999999 78999999999998 8999999999999986
Q ss_pred hcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccC
Q 004428 308 RTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFG 387 (754)
Q Consensus 308 ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg 387 (754)
+. ..++||++|||+||.|+++.+..+.... + +.....|
T Consensus 73 ~~----------------------------------~~~il~i~P~r~La~q~~~~~~~~~~~g--~------~v~~~~G 110 (715)
T 2va8_A 73 KN----------------------------------GGKAIYVTPLRALTNEKYLTFKDWELIG--F------KVAMTSG 110 (715)
T ss_dssp HS----------------------------------CSEEEEECSCHHHHHHHHHHHGGGGGGT--C------CEEECCS
T ss_pred HC----------------------------------CCeEEEEeCcHHHHHHHHHHHHHhhcCC--C------EEEEEeC
Confidence 32 2589999999999999999996553221 0 1111122
Q ss_pred CCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHh
Q 004428 388 TKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMT 467 (754)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~ 467 (754)
+.. ... +.+ ..++|||+||+.|..++.
T Consensus 111 ~~~----------------------------------------------~~~-~~~------~~~~Iiv~Tpe~l~~~~~ 137 (715)
T 2va8_A 111 DYD----------------------------------------------TDD-AWL------KNYDIIITTYEKLDSLWR 137 (715)
T ss_dssp CSS----------------------------------------------SCC-GGG------GGCSEEEECHHHHHHHHH
T ss_pred CCC----------------------------------------------Cch-hhc------CCCCEEEEcHHHHHHHHh
Confidence 110 000 111 258999999999999886
Q ss_pred hhhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCC
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHP 546 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~ 546 (754)
. +..+|+.+.++||||||.+.. +....+..++..+. ..|.|++|||+
T Consensus 138 ~-------~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~-------------------------~~~ii~lSATl 185 (715)
T 2va8_A 138 H-------RPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK-------------------------RRNLLALSATI 185 (715)
T ss_dssp H-------CCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-------------------------TSEEEEEESCC
T ss_pred C-------ChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc-------------------------cCcEEEEcCCC
Confidence 2 345699999999999999874 33345666665542 27999999999
Q ss_pred CHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEE-----------EeccCc--ccchhHHHHHHHHHHHhHHh
Q 004428 547 NPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYE-----------RFNADS--IAKADDARLEYFTKKVFPKI 613 (754)
Q Consensus 547 ~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~-----------r~~~~s--~~~~~d~Rf~yF~~~iLp~l 613 (754)
+. ...+. .++.. .+ +..... ...+.+.+. .+.... .....+..+. .+...+
T Consensus 186 ~n-~~~~~-~~l~~---~~-~~~~~r------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 249 (715)
T 2va8_A 186 SN-YKQIA-KWLGA---EP-VATNWR------PVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIA----YTLDSL 249 (715)
T ss_dssp TT-HHHHH-HHHTC---EE-EECCCC------SSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHH----HHHHHH
T ss_pred CC-HHHHH-HHhCC---Cc-cCCCCC------CCCceEEEEecCCcccceeeecCcchhhhcccchHHHH----HHHHHH
Confidence 73 23333 33321 11 111100 001111111 111100 0000122222 122222
Q ss_pred hhcCCCcEEEEecchhcHHHHHHHHHhCC------------------------------------CceEeecCCCCHHHH
Q 004428 614 KDSIQGGIMLFLSSYFEFVRLRNFLKSQN------------------------------------ASFCLLGDYTEPSDI 657 (754)
Q Consensus 614 ~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~------------------------------------~~f~~Ihey~sq~~r 657 (754)
...+++||||++..+...+...|.+.. ..+..+|+.+++.+|
T Consensus 250 --~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r 327 (715)
T 2va8_A 250 --SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALR 327 (715)
T ss_dssp --TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred --hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHH
Confidence 245899999999999999999998642 248889999999999
Q ss_pred HHHHHHHhcCCccEEEEcccccccCccccCCCCeEEE----cc-------CCCCCCchhhhccccCCCC---CceEEEEe
Q 004428 658 SRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLII----YS-------LPERKEFYPEIVNMLEGSH---NMTCTVLF 723 (754)
Q Consensus 658 ~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIf----Y~-------lP~~pefY~erigrt~ra~---~g~~~~L~ 723 (754)
.++...|.+|.++|||+|+.+. +|++|+++..||+ |+ .|.++..|.+|+||+||.+ .|.|+.|+
T Consensus 328 ~~v~~~f~~g~~~vlvaT~~l~--~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~ 405 (715)
T 2va8_A 328 DLIEEGFRQRKIKVIVATPTLA--AGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVV 405 (715)
T ss_dssp HHHHHHHHTTCSCEEEECGGGG--GSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEEC
T ss_pred HHHHHHHHcCCCeEEEEChHHh--cccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEe
Confidence 9999999999999999999999 9999999999999 99 8999999999999999987 68999999
Q ss_pred chhc
Q 004428 724 SRFD 727 (754)
Q Consensus 724 sk~D 727 (754)
+..+
T Consensus 406 ~~~~ 409 (715)
T 2va8_A 406 RDKE 409 (715)
T ss_dssp SCGG
T ss_pred CCch
Confidence 8776
No 33
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=2.1e-31 Score=306.92 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=91.6
Q ss_pred CCcEEEEecchhcHHHHHHHHHhC------CCceEeecCC--------CCHHHHHHHHHHHhcCCccEEEEcccccccCc
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQ------NASFCLLGDY--------TEPSDISRARVWFFEGKRKMILYTERSHFYHR 683 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~------~~~f~~Ihey--------~sq~~r~rar~~F~~G~~~ILL~TErahffRr 683 (754)
..++||||++......|..+|+.. |+.+..+|+. +++.+|.+++..|++|+++|||+|+.+. +|
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~--~G 477 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAE--EG 477 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCC--TT
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccc--cC
Confidence 689999999999999999999987 8999999999 9999999999999999999999999999 99
Q ss_pred cccCCCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechhc
Q 004428 684 YKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRFD 727 (754)
Q Consensus 684 ~dIkgV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~D 727 (754)
+||++|++||+||+|.++.-|.||+||.++. |.+++||+..+
T Consensus 478 IDip~v~~VI~~d~p~s~~~~~Qr~GRArr~--g~~~~l~~~~~ 519 (699)
T 4gl2_A 478 LDIKECNIVIRYGLVTNEIAMVQARGRARAD--ESTYVLVAHSG 519 (699)
T ss_dssp SCCCSCCCCEEESCCCCHHHHHHHHTTSCSS--SCEEEEEEESS
T ss_pred CccccCCEEEEeCCCCCHHHHHHHcCCCCCC--CceEEEEEeCC
Confidence 9999999999999999999999999995443 46666665443
No 34
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.97 E-value=5e-30 Score=298.78 Aligned_cols=339 Identities=12% Similarity=0.077 Sum_probs=246.3
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhh-hhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSL-CNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~-i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
++|.+++|++.+.+.+.+. |+.. ++|+|.++++. +.++++++++++|| +|||.+|.+++++++.+
T Consensus 1 ~~f~~l~l~~~~~~~l~~~----g~~~-l~~~Q~~~i~~~~~~~~~~lv~apTG---------sGKT~~~~l~il~~~~~ 66 (720)
T 2zj8_A 1 MRVDELRVDERIKSTLKER----GIES-FYPPQAEALKSGILEGKNALISIPTA---------SGKTLIAEIAMVHRILT 66 (720)
T ss_dssp CBGGGCCSCHHHHHHHHHT----TCCB-CCHHHHHHHTTTGGGTCEEEEECCGG---------GCHHHHHHHHHHHHHHH
T ss_pred CcHhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhcCCCcEEEEcCCc---------cHHHHHHHHHHHHHHHh
Confidence 3589999999999888774 7765 79999999998 88999999999998 89999999999999863
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
. .+++||++|||+||.|+++.+.++.+.. + +.....|+
T Consensus 67 ~----------------------------------~~~~l~i~P~raLa~q~~~~~~~l~~~g--~------~v~~~~G~ 104 (720)
T 2zj8_A 67 Q----------------------------------GGKAVYIVPLKALAEEKFQEFQDWEKIG--L------RVAMATGD 104 (720)
T ss_dssp H----------------------------------CSEEEEECSSGGGHHHHHHHTGGGGGGT--C------CEEEECSC
T ss_pred C----------------------------------CCEEEEEcCcHHHHHHHHHHHHHHHhcC--C------EEEEecCC
Confidence 2 2589999999999999999996654321 0 11112221
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
. ....+.+ ..++|||+||++|..++..
T Consensus 105 ~-----------------------------------------------~~~~~~~------~~~~Iiv~Tpe~l~~~~~~ 131 (720)
T 2zj8_A 105 Y-----------------------------------------------DSKDEWL------GKYDIIIATAEKFDSLLRH 131 (720)
T ss_dssp S-----------------------------------------------SCCCGGG------GGCSEEEECHHHHHHHHHH
T ss_pred C-----------------------------------------------Ccccccc------CCCCEEEECHHHHHHHHHc
Confidence 1 1111111 2589999999999988762
Q ss_pred hhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
+..+|+.+.++||||||.|.. +...++..++..+.. -.|.|++|||++
T Consensus 132 -------~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~------------------------~~~ii~lSATl~ 180 (720)
T 2zj8_A 132 -------GSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLG------------------------KAQIIGLSATIG 180 (720)
T ss_dssp -------TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBT------------------------TBEEEEEECCCS
T ss_pred -------ChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhc------------------------CCeEEEEcCCcC
Confidence 345689999999999999984 556677777766631 279999999997
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEE-----EeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEE
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYE-----RFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIM 622 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~-----r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tL 622 (754)
. ...+. .++.. .+ +..... ...+.+.+. .+..... ...+.... ++..+.. ..+++|
T Consensus 181 n-~~~~~-~~l~~---~~-~~~~~r------p~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~-~~~~~L 241 (720)
T 2zj8_A 181 N-PEELA-EWLNA---EL-IVSDWR------PVKLRRGVFYQGFVTWEDGSI-DRFSSWEE-----LVYDAIR-KKKGAL 241 (720)
T ss_dssp C-HHHHH-HHTTE---EE-EECCCC------SSEEEEEEEETTEEEETTSCE-EECSSTTH-----HHHHHHH-TTCCEE
T ss_pred C-HHHHH-HHhCC---cc-cCCCCC------CCcceEEEEeCCeeeccccch-hhhhHHHH-----HHHHHHh-CCCCEE
Confidence 4 23333 23321 11 111100 011221111 0110000 00111121 1222211 358999
Q ss_pred EEecchhcHHHHHHHHHhC------------------C---------------CceEeecCCCCHHHHHHHHHHHhcCCc
Q 004428 623 LFLSSYFEFVRLRNFLKSQ------------------N---------------ASFCLLGDYTEPSDISRARVWFFEGKR 669 (754)
Q Consensus 623 IFv~Sy~d~vrlrn~Lk~~------------------~---------------~~f~~Ihey~sq~~r~rar~~F~~G~~ 669 (754)
|||++..++..+...|.+. + ..+..+|+.+++.+|.++...|++|.+
T Consensus 242 VF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~ 321 (720)
T 2zj8_A 242 IFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGII 321 (720)
T ss_dssp EECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSS
T ss_pred EEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCC
Confidence 9999999999999999753 1 248899999999999999999999999
Q ss_pred cEEEEcccccccCccccCCCCeEEE----cc----CCCCCCchhhhccccCCCC---CceEEEEechhcHH
Q 004428 670 KMILYTERSHFYHRYKIRGIQNLII----YS----LPERKEFYPEIVNMLEGSH---NMTCTVLFSRFDML 729 (754)
Q Consensus 670 ~ILL~TErahffRr~dIkgV~~VIf----Y~----lP~~pefY~erigrt~ra~---~g~~~~L~sk~D~~ 729 (754)
+|||+|+.+. +|++|+++..||+ |+ .|.++..|.+|+||+||.+ .|.|+.|++..+..
T Consensus 322 ~vlvaT~~l~--~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 322 KAVVATPTLS--AGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp CEEEECSTTG--GGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred eEEEECcHhh--ccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH
Confidence 9999999999 9999999999999 77 6899999999999999987 58899999988743
No 35
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.97 E-value=1.9e-30 Score=301.58 Aligned_cols=342 Identities=10% Similarity=0.076 Sum_probs=241.1
Q ss_pred CcCCCC--CCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 231 LYSDYG--LKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 231 ~f~~l~--L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
+|++++ |++.+.+.+.+ .|+.. ++|+|+++++.+.++++++++++|| +|||.+|.+++++++.+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~----~g~~~-l~~~Q~~~i~~i~~~~~~lv~apTG---------sGKT~~~~l~il~~~~~ 67 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKE----EGIEE-LFPPQAEAVEKVFSGKNLLLAMPTA---------AGKTLLAEMAMVREAIK 67 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHC----C---C-CCCCCHHHHHHHTTCSCEEEECSSH---------HHHHHHHHHHHHHHHHT
T ss_pred chhhhhhccCHHHHHHHHh----CCCCC-CCHHHHHHHHHHhCCCcEEEEcCCc---------cHHHHHHHHHHHHHHHh
Confidence 467776 77777777655 47765 7999999999999999999999998 99999999999998752
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
.+++||++|||+||.|+++.+.++....- +.....|+
T Consensus 68 -----------------------------------~~~~l~i~P~r~La~q~~~~~~~~~~~g~--------~v~~~~G~ 104 (702)
T 2p6r_A 68 -----------------------------------GGKSLYVVPLRALAGEKYESFKKWEKIGL--------RIGISTGD 104 (702)
T ss_dssp -----------------------------------TCCEEEEESSHHHHHHHHHHHTTTTTTTC--------CEEEECSS
T ss_pred -----------------------------------CCcEEEEeCcHHHHHHHHHHHHHHHhcCC--------EEEEEeCC
Confidence 24799999999999999999965543211 11112221
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
.. ...+. ...++|||+||++|..++..
T Consensus 105 ~~-----------------------------------------------~~~~~------~~~~~Iiv~Tpe~l~~~l~~ 131 (702)
T 2p6r_A 105 YE-----------------------------------------------SRDEH------LGDCDIIVTTSEKADSLIRN 131 (702)
T ss_dssp CB-----------------------------------------------CCSSC------STTCSEEEEEHHHHHHHHHT
T ss_pred CC-----------------------------------------------cchhh------ccCCCEEEECHHHHHHHHHc
Confidence 10 00000 12589999999999998862
Q ss_pred hhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
+..+|+.+.++||||||.|.. +...++..++..+..++. ..|.|++|||++
T Consensus 132 -------~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~---------------------~~~ii~lSATl~ 183 (702)
T 2p6r_A 132 -------RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK---------------------ALRVIGLSATAP 183 (702)
T ss_dssp -------TCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCT---------------------TCEEEEEECCCT
T ss_pred -------ChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCc---------------------CceEEEECCCcC
Confidence 345699999999999999884 444566666666543222 279999999998
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEE------EeccCcccchhHHHHHHHHHHHhHHhhhcCCCcE
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYE------RFNADSIAKADDARLEYFTKKVFPKIKDSIQGGI 621 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~------r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~t 621 (754)
. ...+.. ++.. .+ +..... ...+.+.+. ..+........-.... ++..+. ...+++
T Consensus 184 n-~~~~~~-~l~~---~~-~~~~~r------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~ 245 (702)
T 2p6r_A 184 N-VTEIAE-WLDA---DY-YVSDWR------PVPLVEGVLCEGTLELFDGAFSTSRRVKFEE-----LVEECV-AENGGV 245 (702)
T ss_dssp T-HHHHHH-HTTC---EE-EECCCC------SSCEEEEEECSSEEEEEETTEEEEEECCHHH-----HHHHHH-HTTCCE
T ss_pred C-HHHHHH-HhCC---Cc-ccCCCC------CccceEEEeeCCeeeccCcchhhhhhhhHHH-----HHHHHH-hcCCCE
Confidence 4 344443 3321 11 111100 011222111 1111000000000111 222222 245899
Q ss_pred EEEecchhcHHHHHHHHHhC------------------------------CCceEeecCCCCHHHHHHHHHHHhcCCccE
Q 004428 622 MLFLSSYFEFVRLRNFLKSQ------------------------------NASFCLLGDYTEPSDISRARVWFFEGKRKM 671 (754)
Q Consensus 622 LIFv~Sy~d~vrlrn~Lk~~------------------------------~~~f~~Ihey~sq~~r~rar~~F~~G~~~I 671 (754)
||||++..+...+...|.+. +..+..+|+.+++.+|.++...|++|+++|
T Consensus 246 LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~v 325 (702)
T 2p6r_A 246 LVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKV 325 (702)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCE
T ss_pred EEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeE
Confidence 99999999999999998753 135778999999999999999999999999
Q ss_pred EEEcccccccCccccCCCCeEEE----cc---CCCCCCchhhhccccCCCC---CceEEEEechhcHHH
Q 004428 672 ILYTERSHFYHRYKIRGIQNLII----YS---LPERKEFYPEIVNMLEGSH---NMTCTVLFSRFDMLR 730 (754)
Q Consensus 672 LL~TErahffRr~dIkgV~~VIf----Y~---lP~~pefY~erigrt~ra~---~g~~~~L~sk~D~~~ 730 (754)
||+|+.+. +|++|+++..||+ |+ .|.++..|.+|+||+||.+ .|.|+.|++..+...
T Consensus 326 lvaT~~l~--~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 326 VVATPTLA--AGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp EEECSTTT--SSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred EEECcHHh--ccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHH
Confidence 99999999 9999999999999 76 7999999999999999987 689999999887543
No 36
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.97 E-value=1e-31 Score=297.91 Aligned_cols=286 Identities=12% Similarity=0.065 Sum_probs=205.1
Q ss_pred CCCCCCCHHHHHHhhhhhCCccE-EEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 253 GGNDFHSSKQRSFFSLCNSYRDI-LHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 253 g~~~~pTpiQ~~~ip~i~~y~Dv-l~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
|+.+ |||+|+ +||.+++++|+ +++++|| +|||.+|++|+|.++++.
T Consensus 1 G~~q-~~~iq~-~i~~~l~~~~~~lv~a~TG---------sGKT~~~~~~~l~~~~~~---------------------- 47 (451)
T 2jlq_A 1 GSAM-GEPDYE-VDEDIFRKKRLTIMDLHPG---------AGKTKRILPSIVREALLR---------------------- 47 (451)
T ss_dssp CCCC-CSCCCC-CCGGGGSTTCEEEECCCTT---------SSCCTTHHHHHHHHHHHT----------------------
T ss_pred CCCC-CCCcHH-HHHHHHhcCCeEEEECCCC---------CCHhhHHHHHHHHHHHhc----------------------
Confidence 4444 899986 79999999998 8899998 899999999999998632
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
.+++|||+|||+||.|+.+.+..+. + .|.....
T Consensus 48 ------------~~~~lvl~Ptr~La~Q~~~~l~g~~-------v--------~~~~~~~-------------------- 80 (451)
T 2jlq_A 48 ------------RLRTLILAPTRVVAAEMEEALRGLP-------I--------RYQTPAV-------------------- 80 (451)
T ss_dssp ------------TCCEEEEESSHHHHHHHHHHTTTSC-------E--------EECCTTC--------------------
T ss_pred ------------CCcEEEECCCHHHHHHHHHHhcCce-------e--------eeeeccc--------------------
Confidence 3689999999999999998774221 1 0110000
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
+ .+ ...+..|.|+||+.|...+.. ...|+.+.++|||||
T Consensus 81 -~--~~------------------------------~~~~~~i~~~t~~~l~~~l~~--------~~~l~~~~~iViDEa 119 (451)
T 2jlq_A 81 -K--SD------------------------------HTGREIVDLMCHATFTTRLLS--------STRVPNYNLIVMDEA 119 (451)
T ss_dssp -S--CC------------------------------CCSSCCEEEEEHHHHHHHHHH--------CSCCCCCSEEEEETT
T ss_pred -c--cc------------------------------CCCCceEEEEChHHHHHHhhC--------cccccCCCEEEEeCC
Confidence 0 00 013568999999998877652 235899999999999
Q ss_pred hhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecc
Q 004428 492 DIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEY 571 (754)
Q Consensus 492 D~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~ 571 (754)
|.|-+. +..+..++......| -+|+|+||||+++.+..++ ..++ ..+.+....
T Consensus 120 h~~~~~-~~~~~~~~~~~~~~~----------------------~~~~i~~SAT~~~~~~~~~---~~~~-~~~~~~~~~ 172 (451)
T 2jlq_A 120 HFTDPC-SVAARGYISTRVEMG----------------------EAAAIFMTATPPGSTDPFP---QSNS-PIEDIEREI 172 (451)
T ss_dssp TCCSHH-HHHHHHHHHHHHHTT----------------------SCEEEEECSSCTTCCCSSC---CCSS-CEEEEECCC
T ss_pred ccCCcc-hHHHHHHHHHhhcCC----------------------CceEEEEccCCCccchhhh---cCCC-ceEecCccC
Confidence 987322 222222222211112 2899999999987653321 1222 122221000
Q ss_pred cCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCC
Q 004428 572 KGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDY 651 (754)
Q Consensus 572 ~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey 651 (754)
+ .+.| . .++..+. ...+++||||++..++..|...|++.++.+..+|+.
T Consensus 173 --------p--~~~~---~-----------------~~~~~l~-~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~ 221 (451)
T 2jlq_A 173 --------P--ERSW---N-----------------TGFDWIT-DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK 221 (451)
T ss_dssp --------C--SSCC---S-----------------SSCHHHH-HCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred --------C--chhh---H-----------------HHHHHHH-hCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHH
Confidence 0 0000 0 0011111 235799999999999999999999999999999996
Q ss_pred CCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEcc--------------------CCCCCCchhhhcccc
Q 004428 652 TEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYS--------------------LPERKEFYPEIVNML 711 (754)
Q Consensus 652 ~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~--------------------lP~~pefY~erigrt 711 (754)
+. .+++..|++|+.+|||+|+++. ||+||++ .+||+|+ +|.++..|.||+||+
T Consensus 222 ~~----~~~~~~f~~g~~~vLVaT~v~~--~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRa 294 (451)
T 2jlq_A 222 TF----DTEYPKTKLTDWDFVVTTDISE--MGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRI 294 (451)
T ss_dssp TH----HHHGGGGGSSCCSEEEECGGGG--SSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTS
T ss_pred HH----HHHHHhhccCCceEEEECCHHH--hCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhcccc
Confidence 54 4688999999999999999999 9999999 9999999 999999999999999
Q ss_pred CCCC--CceEEEEec
Q 004428 712 EGSH--NMTCTVLFS 724 (754)
Q Consensus 712 ~ra~--~g~~~~L~s 724 (754)
||.+ .|.|+.++.
T Consensus 295 GR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 295 GRNPAQEDDQYVFSG 309 (451)
T ss_dssp SCCTTCCCEEEEECS
T ss_pred CCCCCCCccEEEEeC
Confidence 9988 567766654
No 37
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.97 E-value=1.9e-29 Score=297.86 Aligned_cols=339 Identities=17% Similarity=0.146 Sum_probs=242.1
Q ss_pred CCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhC-CccEEEecCCCCccCCCCCCchhHHHHHHHHHHHH
Q 004428 228 DDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNS-YRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHI 306 (754)
Q Consensus 228 ~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~-y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv 306 (754)
++..|.++++++.+.+.+... + .+|+++|++.|+.++. +++++++++|| +|||. +||++ +
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r----~--~lP~~~q~~~i~~~l~~~~~vii~gpTG---------SGKTt--llp~l--l 130 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIR----R--ELPVHAQRDEFLKLYQNNQIMVFVGETG---------SGKTT--QIPQF--V 130 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHH----T--TSGGGGGHHHHHHHHHHCSEEEEECCTT---------SSHHH--HHHHH--H
T ss_pred CCCCccccCCCHHHHHHHHHh----h--cCChHHHHHHHHHHHhCCCeEEEECCCC---------CCHHH--HHHHH--H
Confidence 457799999999999998875 3 4699999999988875 56899999998 88998 56766 2
Q ss_pred hhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccccc
Q 004428 307 FRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEF 386 (754)
Q Consensus 307 ~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ef 386 (754)
+.... ..| ..+++||++|||+||.|+.+.+.+..... + ...+
T Consensus 131 ~~~~~---------------------------~~~-~g~~ilvl~P~r~La~q~~~~l~~~~~~~----v------~~~v 172 (773)
T 2xau_A 131 LFDEM---------------------------PHL-ENTQVACTQPRRVAAMSVAQRVAEEMDVK----L------GEEV 172 (773)
T ss_dssp HHHHC---------------------------GGG-GTCEEEEEESCHHHHHHHHHHHHHHTTCC----B------TTTE
T ss_pred HHhcc---------------------------ccC-CCceEEecCchHHHHHHHHHHHHHHhCCc----h------hhee
Confidence 21100 011 13679999999999999998776543211 0 0111
Q ss_pred CCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHH
Q 004428 387 GTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKM 466 (754)
Q Consensus 387 g~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI 466 (754)
|.. +.+.... -...+|+|+|||.|...+
T Consensus 173 G~~----------------------------------------------i~~~~~~------~~~~~I~v~T~G~l~r~l 200 (773)
T 2xau_A 173 GYS----------------------------------------------IRFENKT------SNKTILKYMTDGMLLREA 200 (773)
T ss_dssp EEE----------------------------------------------ETTEEEC------CTTCSEEEEEHHHHHHHH
T ss_pred cce----------------------------------------------ecccccc------CCCCCEEEECHHHHHHHH
Confidence 100 1111000 035899999999999876
Q ss_pred hhhhcccccCcccCCceeEEEEecchh-hhhcCchHHHHHHHHhc-cCCCCCCCCchhhhhhhhcccCCCccccEEEEcC
Q 004428 467 TKAEENKEQDVDYLSSIEVLIIDHADI-ILMQNWSWLIEVVEQLN-RIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSY 544 (754)
Q Consensus 467 ~~~e~~k~rd~dfLSSIEiLVlDeAD~-mLmQNw~hv~~Il~~Ln-~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSA 544 (754)
-. + ..|+.+.+|||||||. ++.. +.+..+++.+. ..| -.|+|++||
T Consensus 201 ~~-------~-~~l~~~~~lIlDEah~R~ld~--d~~~~~l~~l~~~~~----------------------~~~iIl~SA 248 (773)
T 2xau_A 201 ME-------D-HDLSRYSCIILDEAHERTLAT--DILMGLLKQVVKRRP----------------------DLKIIIMSA 248 (773)
T ss_dssp HH-------S-TTCTTEEEEEECSGGGCCHHH--HHHHHHHHHHHHHCT----------------------TCEEEEEES
T ss_pred hh-------C-ccccCCCEEEecCccccccch--HHHHHHHHHHHHhCC----------------------CceEEEEec
Confidence 52 2 3599999999999995 6632 22233332221 112 279999999
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEE
Q 004428 545 HPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLF 624 (754)
Q Consensus 545 t~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIF 624 (754)
|++++ .+..++.+.+ .+.+ .|. ...|.+.|....... ...-.+..++..+.....+++|||
T Consensus 249 T~~~~---~l~~~~~~~~-vi~v----~gr----~~pv~~~~~~~~~~~-------~~~~~l~~l~~~~~~~~~g~iLVF 309 (773)
T 2xau_A 249 TLDAE---KFQRYFNDAP-LLAV----PGR----TYPVELYYTPEFQRD-------YLDSAIRTVLQIHATEEAGDILLF 309 (773)
T ss_dssp CSCCH---HHHHHTTSCC-EEEC----CCC----CCCEEEECCSSCCSC-------HHHHHHHHHHHHHHHSCSCEEEEE
T ss_pred cccHH---HHHHHhcCCC-cccc----cCc----ccceEEEEecCCchh-------HHHHHHHHHHHHHHhcCCCCEEEE
Confidence 99864 2345665532 2222 121 124666554432211 111112233333333457899999
Q ss_pred ecchhcHHHHHHHHHh-----------CCCceEeecCCCCHHHHHHHHHHHh-----cCCccEEEEcccccccCccccCC
Q 004428 625 LSSYFEFVRLRNFLKS-----------QNASFCLLGDYTEPSDISRARVWFF-----EGKRKMILYTERSHFYHRYKIRG 688 (754)
Q Consensus 625 v~Sy~d~vrlrn~Lk~-----------~~~~f~~Ihey~sq~~r~rar~~F~-----~G~~~ILL~TErahffRr~dIkg 688 (754)
|++..+..++...|.+ .++.+..+|+.+++.+|.++...|. .|+.+|||||++|. +|+||++
T Consensus 310 ~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae--~GidIp~ 387 (773)
T 2xau_A 310 LTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAE--TSLTIDG 387 (773)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHH--HTCCCTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHH--hCcCcCC
Confidence 9999999999999985 6888999999999999999999999 99999999999999 9999999
Q ss_pred CCeEEEccC------------------CCCCCchhhhccccCCCCCceEEEEechhcH
Q 004428 689 IQNLIIYSL------------------PERKEFYPEIVNMLEGSHNMTCTVLFSRFDM 728 (754)
Q Consensus 689 V~~VIfY~l------------------P~~pefY~erigrt~ra~~g~~~~L~sk~D~ 728 (754)
|.+||+|++ |.+...|.||+||+||...|.|+.||++.+.
T Consensus 388 v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 388 IVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHH
T ss_pred eEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHh
Confidence 999999888 8899999999999999988999999998876
No 38
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1e-28 Score=298.94 Aligned_cols=325 Identities=11% Similarity=0.063 Sum_probs=233.2
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
++|+|+++++.+.++++++++++|| +|||.+|.++++..+.
T Consensus 87 L~~~Q~eai~~l~~g~~vLV~apTG---------SGKTlva~lai~~~l~------------------------------ 127 (1010)
T 2xgj_A 87 LDPFQDTAISCIDRGESVLVSAHTS---------AGKTVVAEYAIAQSLK------------------------------ 127 (1010)
T ss_dssp CCHHHHHHHHHHHHTCEEEEECCTT---------SCHHHHHHHHHHHHHH------------------------------
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCC---------CChHHHHHHHHHHHhc------------------------------
Confidence 7999999999999999999999998 8999999999988762
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
. .++|||++|||+||.|+...|.++.+...
T Consensus 128 --~---g~rvL~l~PtkaLa~Q~~~~l~~~~~~vg--------------------------------------------- 157 (1010)
T 2xgj_A 128 --N---KQRVIYTSPIKALSNQKYRELLAEFGDVG--------------------------------------------- 157 (1010)
T ss_dssp --T---TCEEEEEESSHHHHHHHHHHHHHHHSCEE---------------------------------------------
T ss_pred --c---CCeEEEECChHHHHHHHHHHHHHHhCCEE---------------------------------------------
Confidence 1 25899999999999999999998754110
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
++.|+ .... ..++|||+||.+|+.++.. +..+|+.+.++||||||.|...
T Consensus 158 -----lltGd--------~~~~----------~~~~IvV~Tpe~L~~~L~~-------~~~~l~~l~lVViDEaH~l~d~ 207 (1010)
T 2xgj_A 158 -----LMTGD--------ITIN----------PDAGCLVMTTEILRSMLYR-------GSEVMREVAWVIFDEVHYMRDK 207 (1010)
T ss_dssp -----EECSS--------CEEC----------TTCSEEEEEHHHHHHHHHH-------TCTTGGGEEEEEEETGGGGGCT
T ss_pred -----EEeCC--------CccC----------CCCCEEEEcHHHHHHHHHc-------CcchhhcCCEEEEechhhhccc
Confidence 11111 1111 2479999999999988862 4567999999999999999843
Q ss_pred Cch-HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHH--HHHHHHHhhcCCCceEEEeecccCc
Q 004428 498 NWS-WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE--INAFFNHHCANYQGKVKLACEYKGV 574 (754)
Q Consensus 498 Nw~-hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pe--insL~~~~~~N~~G~Vkv~~~~~g~ 574 (754)
.+. .+..++.. +|.. .|+|++|||++.. +...+.....++ ..+.....
T Consensus 208 ~rg~~~e~il~~---l~~~---------------------~~il~LSATi~n~~e~a~~l~~~~~~~-~~vi~~~~---- 258 (1010)
T 2xgj_A 208 ERGVVWEETIIL---LPDK---------------------VRYVFLSATIPNAMEFAEWICKIHSQP-CHIVYTNF---- 258 (1010)
T ss_dssp TTHHHHHHHHHH---SCTT---------------------CEEEEEECCCTTHHHHHHHHHHHHTSC-EEEEEECC----
T ss_pred chhHHHHHHHHh---cCCC---------------------CeEEEEcCCCCCHHHHHHHHHhhcCCC-eEEEecCC----
Confidence 222 23344433 3543 7999999999753 333333333322 12222111
Q ss_pred ccccccceeEEEEE---------eccCcccchh----------------------HH------HH-------HHHHHHHh
Q 004428 575 LPKVLLNVRQIYER---------FNADSIAKAD----------------------DA------RL-------EYFTKKVF 610 (754)
Q Consensus 575 i~~v~~~I~Q~f~r---------~~~~s~~~~~----------------------d~------Rf-------~yF~~~iL 610 (754)
-...+.+.+.. ++........ .. +- .--+..++
T Consensus 259 ---rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~ 335 (1010)
T 2xgj_A 259 ---RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIV 335 (1010)
T ss_dssp ---CSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHH
T ss_pred ---CcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHH
Confidence 01224443332 1110000000 00 00 00112244
Q ss_pred HHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCc---------------------------------------eEeecCC
Q 004428 611 PKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNAS---------------------------------------FCLLGDY 651 (754)
Q Consensus 611 p~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~---------------------------------------f~~Ihey 651 (754)
..+......++||||+|...+..+...|...++. ++.+|+.
T Consensus 336 ~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hgg 415 (1010)
T 2xgj_A 336 KMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSG 415 (1010)
T ss_dssp HHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTT
T ss_pred HHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCC
Confidence 4444445668999999999999999999876553 6779999
Q ss_pred CCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEE----ccC----CCCCCchhhhccccCCCC---CceEE
Q 004428 652 TEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLII----YSL----PERKEFYPEIVNMLEGSH---NMTCT 720 (754)
Q Consensus 652 ~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIf----Y~l----P~~pefY~erigrt~ra~---~g~~~ 720 (754)
+++.+|..+...|++|.++|||||+.++ +|+||+++..||+ |++ |.++..|.||+||+||.+ .|.|+
T Consensus 416 l~~~eR~~ve~~F~~G~ikVLVAT~~la--~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi 493 (1010)
T 2xgj_A 416 LLPILKEVIEILFQEGFLKVLFATETFS--IGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVI 493 (1010)
T ss_dssp SCHHHHHHHHHHHHTTCCSEEEEEGGGG--GSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEehHhh--ccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEE
Confidence 9999999999999999999999999999 9999999999999 999 899999999999999987 49999
Q ss_pred EEechh-cHHHHHHHh
Q 004428 721 VLFSRF-DMLRLERIV 735 (754)
Q Consensus 721 ~L~sk~-D~~~LErIV 735 (754)
.|++.. +...+.+++
T Consensus 494 ~l~~~~~e~~~~~~l~ 509 (1010)
T 2xgj_A 494 MMIDEKMEPQVAKGMV 509 (1010)
T ss_dssp EEECSCCCHHHHHHHH
T ss_pred EEECCCCCHHHHHHHH
Confidence 999865 555566554
No 39
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.96 E-value=9.7e-32 Score=313.08 Aligned_cols=287 Identities=11% Similarity=0.058 Sum_probs=198.4
Q ss_pred CCCHHHH-----HHhhhhh------CCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcc
Q 004428 257 FHSSKQR-----SFFSLCN------SYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKV 325 (754)
Q Consensus 257 ~pTpiQ~-----~~ip~i~------~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~ 325 (754)
.|||||+ ++||.++ +++|++.+++|| +|||.+|++++|+++.+.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTG---------SGKTl~~ll~il~~l~~~---------------- 269 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPG---------AGKTRRILPQIIKDAIQK---------------- 269 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTT---------TTTTTTHHHHHHHHHHHT----------------
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCC---------CCHHHHHHHHHHHHHHhC----------------
Confidence 3899999 9999998 999999999998 899999999999998632
Q ss_pred ccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhccc
Q 004428 326 SAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIR 405 (754)
Q Consensus 326 ~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~ 405 (754)
.+++|||+|||+||.|+.+.+..+.-. |...
T Consensus 270 ------------------~~~~lilaPTr~La~Q~~~~l~~~~i~---------------~~~~---------------- 300 (673)
T 2wv9_A 270 ------------------RLRTAVLAPTRVVAAEMAEALRGLPVR---------------YLTP---------------- 300 (673)
T ss_dssp ------------------TCCEEEEESSHHHHHHHHHHTTTSCCE---------------ECCC----------------
T ss_pred ------------------CCcEEEEccHHHHHHHHHHHHhcCCee---------------eecc----------------
Confidence 368999999999999999877644210 0000
Q ss_pred ccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhccc-ccCcccCCcee
Q 004428 406 GTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENK-EQDVDYLSSIE 484 (754)
Q Consensus 406 n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k-~rd~dfLSSIE 484 (754)
.++ .|+||++|.+++....... -.....|+.+.
T Consensus 301 ------------------------------------~l~----------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~ 334 (673)
T 2wv9_A 301 ------------------------------------AVQ----------REHSGNEIVDVMCHATLTHRLMSPLRVPNYN 334 (673)
T ss_dssp -------------------------------------------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCS
T ss_pred ------------------------------------ccc----------ccCCHHHHHHHHHhhhhHHHHhcccccccce
Confidence 000 0445554443332100000 00112589999
Q ss_pred EEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCce
Q 004428 485 VLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGK 564 (754)
Q Consensus 485 iLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~ 564 (754)
+|||||||+|-......+..+...+. +. .+|+|+||||+++.+..+... +. .
T Consensus 335 lvViDEaH~~~~~~~~~~~~l~~~~~--~~---------------------~~~vl~~SAT~~~~i~~~~~~---~~--~ 386 (673)
T 2wv9_A 335 LFVMDEAHFTDPASIAARGYIATRVE--AG---------------------EAAAIFMTATPPGTSDPFPDT---NS--P 386 (673)
T ss_dssp EEEEESTTCCCHHHHHHHHHHHHHHH--TT---------------------SCEEEEECSSCTTCCCSSCCC---SS--C
T ss_pred EEEEeCCcccCccHHHHHHHHHHhcc--cc---------------------CCcEEEEcCCCChhhhhhccc---CC--c
Confidence 99999999982211111222222221 11 389999999999775432211 11 1
Q ss_pred EEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCc
Q 004428 565 VKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNAS 644 (754)
Q Consensus 565 Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~ 644 (754)
+. .+...+..... . .++..+.. ..+++|||||+..+...|...|++.++.
T Consensus 387 i~-----------------~v~~~~~~~~~----~--------~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~ 436 (673)
T 2wv9_A 387 VH-----------------DVSSEIPDRAW----S--------SGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAGKR 436 (673)
T ss_dssp EE-----------------EEECCCCSSCC----S--------SCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTCC
T ss_pred eE-----------------EEeeecCHHHH----H--------HHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCCe
Confidence 11 11111111111 0 12222222 4679999999999999999999999999
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEE--------------------ccCCCCCCch
Q 004428 645 FCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLII--------------------YSLPERKEFY 704 (754)
Q Consensus 645 f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIf--------------------Y~lP~~pefY 704 (754)
+..+|+ ++|.+++..|++|+++|||+|+++. +|+||+ |.+||+ |++|.++..|
T Consensus 437 v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e--~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y 509 (673)
T 2wv9_A 437 VIQLNR----KSYDTEYPKCKNGDWDFVITTDISE--MGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASA 509 (673)
T ss_dssp EEEECS----SSHHHHGGGGGTCCCSEEEECGGGG--TTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHH
T ss_pred EEEeCh----HHHHHHHHHHHCCCceEEEECchhh--cceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHH
Confidence 999999 4788899999999999999999999 999999 999998 6799999999
Q ss_pred hhhccccCCC-C-CceEEEEe---chhcH
Q 004428 705 PEIVNMLEGS-H-NMTCTVLF---SRFDM 728 (754)
Q Consensus 705 ~erigrt~ra-~-~g~~~~L~---sk~D~ 728 (754)
.||+||+||. + .|.|++|+ +..|.
T Consensus 510 ~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~ 538 (673)
T 2wv9_A 510 AQRRGRVGRNPSQIGDEYHYGGGTSEDDT 538 (673)
T ss_dssp HHHHTTSSCCSSCCCEEEEECSCCCCCCT
T ss_pred HHHhhccCCCCCCCCEEEEEEecCChhHH
Confidence 9999999998 4 68999996 45564
No 40
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.96 E-value=3.8e-31 Score=293.00 Aligned_cols=279 Identities=14% Similarity=0.106 Sum_probs=188.3
Q ss_pred hhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceE
Q 004428 268 LCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKV 347 (754)
Q Consensus 268 ~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkV 347 (754)
.+++++|++.+++|| +|||.+|++++++++.+. .+++
T Consensus 4 ~l~~g~~vlv~a~TG---------SGKT~~~l~~~l~~~~~~----------------------------------~~~~ 40 (440)
T 1yks_A 4 MLKKGMTTVLDFHPG---------AGKTRRFLPQILAECARR----------------------------------RLRT 40 (440)
T ss_dssp TTSTTCEEEECCCTT---------SSTTTTHHHHHHHHHHHT----------------------------------TCCE
T ss_pred HhhCCCCEEEEcCCC---------CCHHHHHHHHHHHHHHhc----------------------------------CCeE
Confidence 467899999999998 899999999999998632 3689
Q ss_pred EEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCC
Q 004428 348 LILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGN 427 (754)
Q Consensus 348 LIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN 427 (754)
|||+|||+||.|+.+.+..+. +. +..
T Consensus 41 lil~Ptr~La~Q~~~~l~~~~-------v~--------~~~--------------------------------------- 66 (440)
T 1yks_A 41 LVLAPTRVVLSEMKEAFHGLD-------VK--------FHT--------------------------------------- 66 (440)
T ss_dssp EEEESSHHHHHHHHHHTTTSC-------EE--------EES---------------------------------------
T ss_pred EEEcchHHHHHHHHHHHhcCC-------eE--------Eec---------------------------------------
Confidence 999999999999998776431 10 000
Q ss_pred CCCcccccccccHHHHhhhcccCCCCE-EEeCchhHHHHHhhhhcc-cccCcccCCceeEEEEecchhhhhcCchHHHHH
Q 004428 428 NDDNFSIGIKFTRKSIKLYNDFYTSDM-IVASPINLHQKMTKAEEN-KEQDVDYLSSIEVLIIDHADIILMQNWSWLIEV 505 (754)
Q Consensus 428 ~dD~FriGik~trk~lkLys~Fy~sDI-IVASPlgLr~lI~~~e~~-k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~I 505 (754)
..+ +|+||++|.+++....-. .-.....++.+.++||||||+|-+.....+..+
T Consensus 67 ------------------------~~~~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~ 122 (440)
T 1yks_A 67 ------------------------QAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWA 122 (440)
T ss_dssp ------------------------SCCCCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHH
T ss_pred ------------------------ccceeccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHH
Confidence 000 266777666554321000 001122489999999999999832222222222
Q ss_pred HHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEE
Q 004428 506 VEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQI 585 (754)
Q Consensus 506 l~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~ 585 (754)
...+. +. .+|+|+||||+++.+..++. . .+.+.. +
T Consensus 123 ~~~~~--~~---------------------~~~~l~~SAT~~~~~~~~~~----~-~~~~~~-----------------~ 157 (440)
T 1yks_A 123 AHRAR--AN---------------------ESATILMTATPPGTSDEFPH----S-NGEIED-----------------V 157 (440)
T ss_dssp HHHHH--TT---------------------SCEEEEECSSCTTCCCSSCC----C-SSCEEE-----------------E
T ss_pred HHHhc--cC---------------------CceEEEEeCCCCchhhhhhh----c-CCCeeE-----------------e
Confidence 22221 11 28999999999987543321 1 112211 1
Q ss_pred EEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHh
Q 004428 586 YERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFF 665 (754)
Q Consensus 586 f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~ 665 (754)
-..++.... . .++..+.. ..+++|||||+...+..+...|++.++++..+|+ .+|.+++..|+
T Consensus 158 ~~~~~~~~~----~--------~~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~ 220 (440)
T 1yks_A 158 QTDIPSEPW----N--------TGHDWILA-DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIK 220 (440)
T ss_dssp ECCCCSSCC----S--------SSCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC-------
T ss_pred eeccChHHH----H--------HHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhc
Confidence 111111111 0 11222222 3579999999999999999999999999999999 46788999999
Q ss_pred cCCccEEEEcccccccCccccCCCCeEEE-------------------ccCCCCCCchhhhccccCCC-C-CceEEEEe-
Q 004428 666 EGKRKMILYTERSHFYHRYKIRGIQNLII-------------------YSLPERKEFYPEIVNMLEGS-H-NMTCTVLF- 723 (754)
Q Consensus 666 ~G~~~ILL~TErahffRr~dIkgV~~VIf-------------------Y~lP~~pefY~erigrt~ra-~-~g~~~~L~- 723 (754)
+|+++|||+|+++. +|+||+ |++||+ |++|.++..|.||+||+||. + .|.|++||
T Consensus 221 ~g~~~vLVaT~v~e--~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 221 QKKPDFILATDIAE--MGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp -CCCSEEEESSSTT--CCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred CCCceEEEECChhh--eeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 99999999999999 999999 999996 99999999999999999997 3 79999997
Q ss_pred --chhcHHHHH
Q 004428 724 --SRFDMLRLE 732 (754)
Q Consensus 724 --sk~D~~~LE 732 (754)
++.|...+.
T Consensus 298 ~~~~~~~~~l~ 308 (440)
T 1yks_A 298 PTSENNAHHVC 308 (440)
T ss_dssp CCCCCCTTBHH
T ss_pred cCChhhhhhhh
Confidence 566644443
No 41
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.96 E-value=4e-28 Score=255.93 Aligned_cols=205 Identities=17% Similarity=0.231 Sum_probs=158.6
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCC--ccEEEecCCCCccCCCCCCchhHHHHHHHHHH
Q 004428 227 KDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSY--RDILHSNKKPFYLKGQEEDSNIMETYLMHSLN 304 (754)
Q Consensus 227 ~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y--~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LN 304 (754)
....+|.+++|++.|+++|..+ |+.. |||+|+++||.++++ +|++++++|| +|||.+|+||+|+
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~----g~~~-pt~iQ~~ai~~il~~~~~~~l~~a~TG---------sGKT~a~~lp~l~ 154 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAM----GFNR-PSKIQENALPLMLAEPPQNLIAQSQSG---------TGKTAAFVLAMLS 154 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHTSSSCCCEEEECCTT---------SSHHHHHHHHHHH
T ss_pred CCcCCHhhcCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHHcCCCCeEEEECCCC---------CCccHHHHHHHHH
Confidence 3467899999999999999885 8876 899999999999998 9999999998 8999999999999
Q ss_pred HHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccc
Q 004428 305 HIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCD 384 (754)
Q Consensus 305 Hv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ 384 (754)
++... -..|++|||+|||+||.|+.+.+.+++..... .+...
T Consensus 155 ~l~~~--------------------------------~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~------~~~~~ 196 (300)
T 3fmo_B 155 QVEPA--------------------------------NKYPQCLCLSPTYELALQTGKVIEQMGKFYPE------LKLAY 196 (300)
T ss_dssp HCCTT--------------------------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT------CCEEE
T ss_pred hhhcc--------------------------------CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCC------cEEEE
Confidence 98532 12589999999999999999999998653211 11222
Q ss_pred ccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHH
Q 004428 385 EFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQ 464 (754)
Q Consensus 385 efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~ 464 (754)
.+|+. .+.+.. ..++|||||||++|.+
T Consensus 197 ~~~~~-----------------------------------------------~~~~~~------~~~~~IlV~TP~~l~~ 223 (300)
T 3fmo_B 197 AVRGN-----------------------------------------------KLERGQ------KISEQIVIGTPGTVLD 223 (300)
T ss_dssp ESTTC-----------------------------------------------CCCTTC------CCCCSEEEECHHHHHH
T ss_pred EeCCc-----------------------------------------------cHhhhh------cCCCCEEEECHHHHHH
Confidence 22222 111111 1468999999999999
Q ss_pred HHhhhhcccccCcccCCceeEEEEecchhhhh-cC-chHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEE
Q 004428 465 KMTKAEENKEQDVDYLSSIEVLIIDHADIILM-QN-WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLL 542 (754)
Q Consensus 465 lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QN-w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllF 542 (754)
++.+ .....|+.+.+|||||||+|+. +. +.++..|+ ..+|+. +|+|+|
T Consensus 224 ~l~~------~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~---~~~~~~---------------------~q~i~~ 273 (300)
T 3fmo_B 224 WCSK------LKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQ---RMLPRN---------------------CQMLLF 273 (300)
T ss_dssp HHTT------TCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHH---TTSCTT---------------------CEEEEE
T ss_pred HHHh------cCCCChhhceEEEEeCHHHHhhccCcHHHHHHHH---HhCCCC---------------------CEEEEE
Confidence 9962 2344589999999999999994 33 34444444 444543 899999
Q ss_pred cCCCCHHHHHHHHHhhcCCCceEEE
Q 004428 543 SYHPNPEINAFFNHHCANYQGKVKL 567 (754)
Q Consensus 543 SAt~~peinsL~~~~~~N~~G~Vkv 567 (754)
|||+++++..++..++.|+ ..|.+
T Consensus 274 SAT~~~~v~~~a~~~l~~p-~~i~~ 297 (300)
T 3fmo_B 274 SATFEDSVWKFAQKVVPDP-NVIKL 297 (300)
T ss_dssp ESCCCHHHHHHHHHHSSSC-EEEEE
T ss_pred eccCCHHHHHHHHHHCCCC-eEEEe
Confidence 9999999999999999985 45555
No 42
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.96 E-value=3.2e-28 Score=294.27 Aligned_cols=321 Identities=11% Similarity=0.090 Sum_probs=226.1
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
++|+|.++++.+++++|++++++|| +|||.+|+++++..+.
T Consensus 40 l~~~Q~~aI~~il~g~~vlv~apTG---------sGKTlv~~~~i~~~~~------------------------------ 80 (997)
T 4a4z_A 40 LDTFQKEAVYHLEQGDSVFVAAHTS---------AGKTVVAEYAIAMAHR------------------------------ 80 (997)
T ss_dssp CCHHHHHHHHHHHTTCEEEEECCTT---------SCSHHHHHHHHHHHHH------------------------------
T ss_pred CCHHHHHHHHHHHcCCCEEEEECCC---------CcHHHHHHHHHHHHHh------------------------------
Confidence 6999999999999999999999998 8999999999887642
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
..+++|||+|||+||.|+++.+.++.+... + ....|
T Consensus 81 -----~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~---v------~~l~G------------------------------ 116 (997)
T 4a4z_A 81 -----NMTKTIYTSPIKALSNQKFRDFKETFDDVN---I------GLITG------------------------------ 116 (997)
T ss_dssp -----TTCEEEEEESCGGGHHHHHHHHHTTC--CC---E------EEECS------------------------------
T ss_pred -----cCCeEEEEeCCHHHHHHHHHHHHHHcCCCe---E------EEEeC------------------------------
Confidence 136899999999999999999998653211 1 11111
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
| .... ..++|||+||++|+..+.. ...+|+.+.++||||||.|...
T Consensus 117 --------~---------~~~~----------~~~~IlV~Tpe~L~~~l~~-------~~~~l~~l~lvViDEaH~l~d~ 162 (997)
T 4a4z_A 117 --------D---------VQIN----------PDANCLIMTTEILRSMLYR-------GADLIRDVEFVIFDEVHYVNDQ 162 (997)
T ss_dssp --------S---------CEEC----------TTSSEEEEEHHHHHHHHHH-------TCSGGGGEEEEEECCTTCCCTT
T ss_pred --------C---------CccC----------CCCCEEEECHHHHHHHHHh-------CchhhcCCCEEEEECccccccc
Confidence 1 1111 2479999999999998862 4557899999999999988744
Q ss_pred Cch-HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHH--HHHHHHHhhcCCCceEEEeecccCc
Q 004428 498 NWS-WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE--INAFFNHHCANYQGKVKLACEYKGV 574 (754)
Q Consensus 498 Nw~-hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pe--insL~~~~~~N~~G~Vkv~~~~~g~ 574 (754)
.+. .+..++.+ +|.. .|+|++|||.+.. +...+.... .+.+.+.... +
T Consensus 163 ~~g~~~e~ii~~---l~~~---------------------v~iIlLSAT~~n~~ef~~~l~~~~---~~~~~vi~~~-~- 213 (997)
T 4a4z_A 163 DRGVVWEEVIIM---LPQH---------------------VKFILLSATVPNTYEFANWIGRTK---QKNIYVISTP-K- 213 (997)
T ss_dssp CTTCCHHHHHHH---SCTT---------------------CEEEEEECCCTTHHHHHHHHHHHH---TCCEEEEECS-S-
T ss_pred chHHHHHHHHHh---cccC---------------------CCEEEEcCCCCChHHHHHHHhccc---CCceEEEecC-C-
Confidence 333 34455544 3443 7999999998743 333332211 1222221110 0
Q ss_pred ccccccceeEEEE-------EeccCcccc---------------------------------------------------
Q 004428 575 LPKVLLNVRQIYE-------RFNADSIAK--------------------------------------------------- 596 (754)
Q Consensus 575 i~~v~~~I~Q~f~-------r~~~~s~~~--------------------------------------------------- 596 (754)
-...+.+.+. .++......
T Consensus 214 ---r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~ 290 (997)
T 4a4z_A 214 ---RPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNS 290 (997)
T ss_dssp ---CSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC---------------------------------------
T ss_pred ---CCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 0111222111 111000000
Q ss_pred ----------------------------hhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCC-----
Q 004428 597 ----------------------------ADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNA----- 643 (754)
Q Consensus 597 ----------------------------~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~----- 643 (754)
..... ...++..+......++||||+|...+..+..+|...++
T Consensus 291 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e 366 (997)
T 4a4z_A 291 TRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKT----WPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKE 366 (997)
T ss_dssp --------------------------CCCCTTH----HHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHH
T ss_pred cccccccccccccccccccccccccccccchhH----HHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHH
Confidence 00001 12344445555678999999999999999999987766
Q ss_pred ----------------------------------ceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCC
Q 004428 644 ----------------------------------SFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGI 689 (754)
Q Consensus 644 ----------------------------------~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV 689 (754)
.+..+|+.+++.+|..+...|.+|.++|||+|+.++ +|+||++
T Consensus 367 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a--~GIDiP~- 443 (997)
T 4a4z_A 367 KSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFA--MGLNLPT- 443 (997)
T ss_dssp HHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHH--HSCCCCC-
T ss_pred HHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhh--CCCCCCC-
Confidence 368999999999999999999999999999999999 9999999
Q ss_pred CeEEEccCCC---------CCCchhhhccccCCCC---CceEEEEec--hhcHHHHHHH
Q 004428 690 QNLIIYSLPE---------RKEFYPEIVNMLEGSH---NMTCTVLFS--RFDMLRLERI 734 (754)
Q Consensus 690 ~~VIfY~lP~---------~pefY~erigrt~ra~---~g~~~~L~s--k~D~~~LErI 734 (754)
.+||++++|. ++.-|.||+||+||.+ .|.|+.++. ..+...++++
T Consensus 444 ~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 444 RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHH
T ss_pred ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHH
Confidence 7888877777 8999999999999976 578888873 3455555544
No 43
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.96 E-value=2e-28 Score=248.83 Aligned_cols=231 Identities=20% Similarity=0.229 Sum_probs=165.1
Q ss_pred CCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHh
Q 004428 228 DDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIF 307 (754)
Q Consensus 228 ~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ 307 (754)
++.+|.+++|++.+++++..+ |+.. |||+|++++|.+++++|++++++|| +|||.+|++|+++++.
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~i~~~~~~l~~a~TG---------sGKT~~~~~~~l~~l~ 86 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLA----SYQR-PTPIQKNAIPAILEHRDIMACAQTG---------SGKTAAFLIPIINHLV 86 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTT----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SSHHHHHHHHHHHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------ChHHHHHHHHHHHHHH
Confidence 678899999999999888663 7775 8999999999999999999999998 8999999999999998
Q ss_pred hcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccC
Q 004428 308 RTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFG 387 (754)
Q Consensus 308 ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg 387 (754)
..+..- .+......|++|||+|||+||.|+.+.+.+++.... .+....+|
T Consensus 87 ~~~~~~-----------------------~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-------~~~~~~~g 136 (253)
T 1wrb_A 87 CQDLNQ-----------------------QRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTP-------LRSCVVYG 136 (253)
T ss_dssp TTCC-----------------------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSS-------CCEEEECS
T ss_pred hhcccc-----------------------ccccccCCceEEEEECCHHHHHHHHHHHHHHhccCC-------ceEEEEEC
Confidence 653210 000112358999999999999999999998864321 12222233
Q ss_pred CCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHh
Q 004428 388 TKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMT 467 (754)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~ 467 (754)
+. .... ..+... .++|||||||++|..++.
T Consensus 137 ~~-----------------------------------------------~~~~-~~~~~~--~~~~Ivv~Tp~~l~~~l~ 166 (253)
T 1wrb_A 137 GA-----------------------------------------------DTHS-QIREVQ--MGCHLLVATPGRLVDFIE 166 (253)
T ss_dssp SS-----------------------------------------------CSHH-HHHHHS--SCCSEEEECHHHHHHHHH
T ss_pred CC-----------------------------------------------CHHH-HHHHhC--CCCCEEEECHHHHHHHHH
Confidence 22 1111 111121 468999999999999987
Q ss_pred hhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCC
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHP 546 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~ 546 (754)
. ....++.+.++||||||+|+ ++++.++..|+..++. |. ...+|+|+||||+
T Consensus 167 ~-------~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~-~~-------------------~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 167 K-------NKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNM-PS-------------------GINRQTLMFSATF 219 (253)
T ss_dssp T-------TSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCC-CC-------------------GGGCEEEEEESSC
T ss_pred c-------CCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccC-CC-------------------CCCcEEEEEEEeC
Confidence 3 33468999999999999998 5566788888876543 32 0138999999999
Q ss_pred CHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEE
Q 004428 547 NPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQI 585 (754)
Q Consensus 547 ~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~ 585 (754)
++++..+++.++.|+ ..|.+... ......|+|.
T Consensus 220 ~~~~~~~~~~~l~~~-~~i~~~~~-----~~~~~~i~q~ 252 (253)
T 1wrb_A 220 PKEIQKLAADFLYNY-IFMTVGRV-----GSTSDSIKQE 252 (253)
T ss_dssp CHHHHHHHHHHCSSC-EEEEEC-----------------
T ss_pred CHHHHHHHHHHcCCC-EEEEECCC-----CCCcCCceec
Confidence 999999999999985 35554322 1234567764
No 44
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.96 E-value=2.5e-27 Score=290.11 Aligned_cols=309 Identities=12% Similarity=0.088 Sum_probs=221.4
Q ss_pred CCHHHHHHhhhhhC----Cc--cEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 258 HSSKQRSFFSLCNS----YR--DILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 258 pTpiQ~~~ip~i~~----y~--Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
+||.|+++++.+++ ++ |++.++.|| +|||.+|+++++..+..
T Consensus 604 ~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TG---------sGKT~val~aa~~~~~~----------------------- 651 (1151)
T 2eyq_A 604 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVG---------FGKTEVAMRAAFLAVDN----------------------- 651 (1151)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCCEEEEECCCC---------TTTHHHHHHHHHHHHTT-----------------------
T ss_pred CCHHHHHHHHHHHHHHhcCCcCcEEEECCCC---------CCHHHHHHHHHHHHHHh-----------------------
Confidence 69999999999876 66 999999998 89999999999876531
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
.++||||+|||+||.|+.+.+.+..+... +.+. ...|..
T Consensus 652 ------------g~~vlvlvPt~~La~Q~~~~~~~~~~~~~-i~v~------~l~~~~---------------------- 690 (1151)
T 2eyq_A 652 ------------HKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIE------MISRFR---------------------- 690 (1151)
T ss_dssp ------------TCEEEEECSSHHHHHHHHHHHHHHSTTTT-CCEE------EESTTS----------------------
T ss_pred ------------CCeEEEEechHHHHHHHHHHHHHHhhcCC-CeEE------EEeCCC----------------------
Confidence 25899999999999999999998764321 1110 001100
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
+.+-.+..++-... ..+||||+||..|.. + ..++.+.+||||||
T Consensus 691 -----------------------~~~~~~~~~~~l~~-g~~dIvV~T~~ll~~-----------~-~~~~~l~lvIiDEa 734 (1151)
T 2eyq_A 691 -----------------------SAKEQTQILAEVAE-GKIDILIGTHKLLQS-----------D-VKFKDLGLLIVDEE 734 (1151)
T ss_dssp -----------------------CHHHHHHHHHHHHT-TCCSEEEECTHHHHS-----------C-CCCSSEEEEEEESG
T ss_pred -----------------------CHHHHHHHHHHHhc-CCCCEEEECHHHHhC-----------C-ccccccceEEEech
Confidence 00111122222221 358999999965531 1 24789999999999
Q ss_pred hhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecc
Q 004428 492 DIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEY 571 (754)
Q Consensus 492 D~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~ 571 (754)
|++-.. ...++..+. . .+|+|++|||..|....+....+.++ .+....
T Consensus 735 H~~g~~----~~~~l~~l~---~---------------------~~~vl~lSATp~p~~l~~~~~~~~~~----~~i~~~ 782 (1151)
T 2eyq_A 735 HRFGVR----HKERIKAMR---A---------------------NVDILTLTATPIPRTLNMAMSGMRDL----SIIATP 782 (1151)
T ss_dssp GGSCHH----HHHHHHHHH---T---------------------TSEEEEEESSCCCHHHHHHHTTTSEE----EECCCC
T ss_pred HhcChH----HHHHHHHhc---C---------------------CCCEEEEcCCCChhhHHHHHhcCCCc----eEEecC
Confidence 996432 233333331 1 27999999999988776665544442 221110
Q ss_pred cCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC--CCceEeec
Q 004428 572 KGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ--NASFCLLG 649 (754)
Q Consensus 572 ~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~--~~~f~~Ih 649 (754)
. .....+++.+...+. . . ....++..+. ..+++||||++..+..++...|++. ++.++.+|
T Consensus 783 ~----~~r~~i~~~~~~~~~-------~-~---i~~~il~~l~--~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lh 845 (1151)
T 2eyq_A 783 P----ARRLAVKTFVREYDS-------M-V---VREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 845 (1151)
T ss_dssp C----CBCBCEEEEEEECCH-------H-H---HHHHHHHHHT--TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECC
T ss_pred C----CCccccEEEEecCCH-------H-H---HHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 0 011234444433221 1 1 1123333332 3578999999999999999999987 89999999
Q ss_pred CCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCC-CCCCchhhhccccCCCC-CceEEEEechh
Q 004428 650 DYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLP-ERKEFYPEIVNMLEGSH-NMTCTVLFSRF 726 (754)
Q Consensus 650 ey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP-~~pefY~erigrt~ra~-~g~~~~L~sk~ 726 (754)
+.+++.+|.+++..|++|+++|||+|+++. +|+||+++++||+++.+ -++..|.||+||+||.+ .|.|+.++...
T Consensus 846 g~~~~~eR~~il~~F~~g~~~VLVaT~v~e--~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 846 GQMRERELERVMNDFHHQRFNVLVCTTIIE--TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp SSCCHHHHHHHHHHHHTTSCCEEEESSTTG--GGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEECCcce--eeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 999999999999999999999999999999 99999999999999884 46677999999999988 78999988754
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.95 E-value=4.8e-27 Score=296.42 Aligned_cols=346 Identities=11% Similarity=0.094 Sum_probs=238.9
Q ss_pred CCCCCCCHHHHHHhhhhhC-CccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 253 GGNDFHSSKQRSFFSLCNS-YRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 253 g~~~~pTpiQ~~~ip~i~~-y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
+|.. ++|+|.++|+.+++ ..+|+++|+|| +|||.+|.++|++++.+.
T Consensus 923 ~f~~-fnpiQ~q~~~~l~~~~~nvlv~APTG---------SGKTliaelail~~l~~~---------------------- 970 (1724)
T 4f92_B 923 KFPF-FNPIQTQVFNTVYNSDDNVFVGAPTG---------SGKTICAEFAILRMLLQS---------------------- 970 (1724)
T ss_dssp TCSB-CCHHHHHHHHHHHSCCSCEEEECCTT---------SCCHHHHHHHHHHHHHHC----------------------
T ss_pred cCCC-CCHHHHHHHHHHhcCCCcEEEEeCCC---------CCchHHHHHHHHHHHHhC----------------------
Confidence 5654 79999999999865 56799999998 899999999999999753
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHh-CCcccccccccccccccccCCCccccCcccchhhhcccccccC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRL-TPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKS 410 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L-~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~ 410 (754)
...|||+++|||+||.|++..+.+. +.... + +..
T Consensus 971 -----------~~~kavyi~P~raLa~q~~~~~~~~f~~~~g-~------~V~--------------------------- 1005 (1724)
T 4f92_B 971 -----------SEGRCVYITPMEALAEQVYMDWYEKFQDRLN-K------KVV--------------------------- 1005 (1724)
T ss_dssp -----------TTCCEEEECSCHHHHHHHHHHHHHHHTTTSC-C------CEE---------------------------
T ss_pred -----------CCCEEEEEcChHHHHHHHHHHHHHHhchhcC-C------EEE---------------------------
Confidence 1247999999999999999999764 33221 1 111
Q ss_pred CCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEec
Q 004428 411 NSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDH 490 (754)
Q Consensus 411 ~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDe 490 (754)
.+.|+ ... ..++. .++|||||||.+|..++... ....+|+.|.++||||
T Consensus 1006 ------------~ltGd--------~~~---~~~~~---~~~~IiV~TPEkld~llr~~-----~~~~~l~~v~lvViDE 1054 (1724)
T 4f92_B 1006 ------------LLTGE--------TST---DLKLL---GKGNIIISTPEKWDILSRRW-----KQRKNVQNINLFVVDE 1054 (1724)
T ss_dssp ------------ECCSC--------HHH---HHHHH---HHCSEEEECHHHHHHHHTTT-----TTCHHHHSCSEEEECC
T ss_pred ------------EEECC--------CCc---chhhc---CCCCEEEECHHHHHHHHhCc-----ccccccceeeEEEeec
Confidence 12221 111 11222 24899999999998877531 2345689999999999
Q ss_pred chhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhc-CCCceEEEee
Q 004428 491 ADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCA-NYQGKVKLAC 569 (754)
Q Consensus 491 AD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~-N~~G~Vkv~~ 569 (754)
||.|..+.-..+..++..|.. +..+...-.|.|++|||++. ...++. ++. +..+...+.+
T Consensus 1055 ~H~l~d~rg~~le~il~rl~~-----------------i~~~~~~~~riI~lSATl~N-~~dla~-WL~~~~~~~~~~~~ 1115 (1724)
T 4f92_B 1055 VHLIGGENGPVLEVICSRMRY-----------------ISSQIERPIRIVALSSSLSN-AKDVAH-WLGCSATSTFNFHP 1115 (1724)
T ss_dssp GGGGGSTTHHHHHHHHHHHHH-----------------HHHTTSSCCEEEEEESCBTT-HHHHHH-HHTCCSTTEEECCG
T ss_pred hhhcCCCCCccHHHHHHHHHH-----------------HHhhcCCCceEEEEeCCCCC-HHHHHH-HhCCCCCCeEEeCC
Confidence 998775443445555544321 11111223799999999962 344443 332 2222222222
Q ss_pred cccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecchhcHHHHHHHHHhC-------
Q 004428 570 EYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSSYFEFVRLRNFLKSQ------- 641 (754)
Q Consensus 570 ~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~Sy~d~vrlrn~Lk~~------- 641 (754)
.. =..++++.++-++... ...|+.-..+.+...+.. ...+++||||+|+..+..++..|.+.
T Consensus 1116 ~~------RPvpL~~~i~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~ 1185 (1724)
T 4f92_B 1116 NV------RPVPLELHIQGFNISH----TQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQR 1185 (1724)
T ss_dssp GG------CSSCEEEEEEEECCCS----HHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCT
T ss_pred CC------CCCCeEEEEEeccCCC----chhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccch
Confidence 11 0124555555555432 233444333333333333 45678999999999998887766321
Q ss_pred ---------------------------CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEE-
Q 004428 642 ---------------------------NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI- 693 (754)
Q Consensus 642 ---------------------------~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI- 693 (754)
..-++..|+.+++.+|......|++|.++|||||+.++ +|++++.+..||
T Consensus 1186 ~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA--~GVnlPa~~VVI~ 1263 (1724)
T 4f92_B 1186 QRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLC--WGMNVAAHLVIIM 1263 (1724)
T ss_dssp TTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGS--SSCCCCBSEEEEE
T ss_pred hhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHH--cCCCCCccEEEEe
Confidence 12367789999999999999999999999999999999 999999988888
Q ss_pred ---------EccCCCCCCchhhhccccCCCC---CceEEEEechhcHHHHHHHhCc
Q 004428 694 ---------IYSLPERKEFYPEIVNMLEGSH---NMTCTVLFSRFDMLRLERIVGS 737 (754)
Q Consensus 694 ---------fY~lP~~pefY~erigrt~ra~---~g~~~~L~sk~D~~~LErIVGt 737 (754)
++..|-.+..|.||+||+||++ .|.|+.|+...+...+++.++.
T Consensus 1264 ~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~ 1319 (1724)
T 4f92_B 1264 DTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYE 1319 (1724)
T ss_dssp CSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTS
T ss_pred cCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCC
Confidence 2345677889999999999987 5889999888888777776654
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.95 E-value=8.4e-29 Score=287.25 Aligned_cols=273 Identities=12% Similarity=0.012 Sum_probs=195.1
Q ss_pred HHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccccc
Q 004428 260 SKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLD 339 (754)
Q Consensus 260 piQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RD 339 (754)
+.|+++++.+.+++|++.+++|| +|||.+|.+++++.
T Consensus 220 ~~q~~i~~~L~~~~~vlv~ApTG---------SGKT~a~~l~ll~~---------------------------------- 256 (666)
T 3o8b_A 220 TDNSSPPAVPQSFQVAHLHAPTG---------SGKSTKVPAAYAAQ---------------------------------- 256 (666)
T ss_dssp CCCCSCCCCCSSCEEEEEECCTT---------SCTTTHHHHHHHHT----------------------------------
T ss_pred HHHHHHHHHHHcCCeEEEEeCCc---------hhHHHHHHHHHHHC----------------------------------
Confidence 35566666667899999999998 89999999998751
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCC
Q 004428 340 RGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSD 419 (754)
Q Consensus 340 QGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D 419 (754)
..+||||+|||+||.|+.+.+.+..... + ...+
T Consensus 257 ----g~~vLVl~PTReLA~Qia~~l~~~~g~~----v------g~~v--------------------------------- 289 (666)
T 3o8b_A 257 ----GYKVLVLNPSVAATLGFGAYMSKAHGID----P------NIRT--------------------------------- 289 (666)
T ss_dssp ----TCCEEEEESCHHHHHHHHHHHHHHHSCC----C------EEEC---------------------------------
T ss_pred ----CCeEEEEcchHHHHHHHHHHHHHHhCCC----e------eEEE---------------------------------
Confidence 1379999999999999998776543211 0 0011
Q ss_pred ceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCc
Q 004428 420 YQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNW 499 (754)
Q Consensus 420 ~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw 499 (754)
+| .. + ..+++|+||||++|. . .....++.+.+||||||+.+-|++.
T Consensus 290 -----G~----------~~----~-----~~~~~IlV~TPGrLl---~-------~~~l~l~~l~~lVlDEAH~l~~~~~ 335 (666)
T 3o8b_A 290 -----GV----------RT----I-----TTGAPVTYSTYGKFL---A-------DGGCSGGAYDIIICDECHSTDSTTI 335 (666)
T ss_dssp -----SS----------CE----E-----CCCCSEEEEEHHHHH---H-------TTSCCTTSCSEEEETTTTCCSHHHH
T ss_pred -----Cc----------Ee----c-----cCCCCEEEECcHHHH---h-------CCCcccCcccEEEEccchhcCccHH
Confidence 11 00 0 146899999999983 3 1234588999999999955446665
Q ss_pred hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCcccc--EEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccc
Q 004428 500 SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQ--TVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPK 577 (754)
Q Consensus 500 ~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQ--TllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~ 577 (754)
..+..|++.+ |. .|| .+++|||+++.+. .+.+....+.....
T Consensus 336 ~~l~~Il~~l---~~---------------------~~~~llil~SAT~~~~i~-------~~~p~i~~v~~~~~----- 379 (666)
T 3o8b_A 336 LGIGTVLDQA---ET---------------------AGARLVVLATATPPGSVT-------VPHPNIEEVALSNT----- 379 (666)
T ss_dssp HHHHHHHHHT---TT---------------------TTCSEEEEEESSCTTCCC-------CCCTTEEEEECBSC-----
T ss_pred HHHHHHHHhh---hh---------------------cCCceEEEECCCCCcccc-------cCCcceEEEeeccc-----
Confidence 6677776665 33 266 5666999997421 11111111111100
Q ss_pred cccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHH
Q 004428 578 VLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDI 657 (754)
Q Consensus 578 v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r 657 (754)
..+ .+.. . .++ +.....+++||||+++.++.+|...|++.++.+..+|+.++|.+
T Consensus 380 --~~i-----~~~~-~---------------~~~-l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e- 434 (666)
T 3o8b_A 380 --GEI-----PFYG-K---------------AIP-IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV- 434 (666)
T ss_dssp --SSE-----EETT-E---------------EEC-GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-
T ss_pred --chh-----HHHH-h---------------hhh-hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-
Confidence 001 0000 0 000 11124689999999999999999999999999999999999986
Q ss_pred HHHHHHHhcCCccEEEEcccccccCccccCCCCeEE----------Ecc-----------CCCCCCchhhhccccCCCCC
Q 004428 658 SRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI----------IYS-----------LPERKEFYPEIVNMLEGSHN 716 (754)
Q Consensus 658 ~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI----------fY~-----------lP~~pefY~erigrt~ra~~ 716 (754)
|+++..+|||+||+++ ||+||+ |++|| ||| +|.+++.|.||+||+||...
T Consensus 435 ------r~~~~~~VLVATdVae--rGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGRg~~ 505 (666)
T 3o8b_A 435 ------IPTIGDVVVVATDALM--TGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRR 505 (666)
T ss_dssp ------SCSSSCEEEEECTTHH--HHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCSSSC
T ss_pred ------HHhCCCcEEEECChHH--ccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCCCCC
Confidence 5667779999999999 999996 99988 788 99999999999999999447
Q ss_pred ceEEEEechhc
Q 004428 717 MTCTVLFSRFD 727 (754)
Q Consensus 717 g~~~~L~sk~D 727 (754)
|. +.||++.|
T Consensus 506 G~-i~lvt~~e 515 (666)
T 3o8b_A 506 GI-YRFVTPGE 515 (666)
T ss_dssp EE-EEESCCCC
T ss_pred CE-EEEEecch
Confidence 88 89998765
No 47
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.95 E-value=1.2e-27 Score=242.34 Aligned_cols=216 Identities=17% Similarity=0.148 Sum_probs=164.4
Q ss_pred CcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHH
Q 004428 222 GECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMH 301 (754)
Q Consensus 222 ~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh 301 (754)
+...|++..+|.+++|++.+++.+.+. |+.. |||+|++++|.+++++|++++++|| +|||.+|++|
T Consensus 21 ~~~~p~~~~~f~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~g~~~l~~apTG---------sGKT~~~~l~ 86 (242)
T 3fe2_A 21 GHNCPKPVLNFYEANFPANVMDVIARQ----NFTE-PTAIQAQGWPVALSGLDMVGVAQTG---------SGKTLSYLLP 86 (242)
T ss_dssp SSCCCCCCSSTTTTTCCHHHHHHHHTT----TCCS-CCHHHHHHHHHHHHTCCEEEEECTT---------SCHHHHHHHH
T ss_pred CCCCCCccCCHhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCc---------CHHHHHHHHH
Confidence 345677889999999999999998874 8876 8999999999999999999999998 8999999999
Q ss_pred HHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccc
Q 004428 302 SLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDR 381 (754)
Q Consensus 302 ~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~R 381 (754)
+++++.+.+.. ..-..|++|||+|||+||.|+.+.+.++..... .+
T Consensus 87 ~l~~l~~~~~~---------------------------~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~-------~~ 132 (242)
T 3fe2_A 87 AIVHINHQPFL---------------------------ERGDGPICLVLAPTRELAQQVQQVAAEYCRACR-------LK 132 (242)
T ss_dssp HHHHHHTSCCC---------------------------CTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTT-------CC
T ss_pred HHHHHHhcccc---------------------------ccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcC-------ce
Confidence 99999754210 001358899999999999999999998854321 12
Q ss_pred cccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchh
Q 004428 382 FCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPIN 461 (754)
Q Consensus 382 f~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlg 461 (754)
....+|+. ......-.+. .++||||+||++
T Consensus 133 ~~~~~g~~-----------------------------------------------~~~~~~~~~~---~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 133 STCIYGGA-----------------------------------------------PKGPQIRDLE---RGVEICIATPGR 162 (242)
T ss_dssp EEEECTTS-----------------------------------------------CHHHHHHHHH---HCCSEEEECHHH
T ss_pred EEEEECCC-----------------------------------------------ChHHHHHHhc---CCCCEEEECHHH
Confidence 22233322 1111111121 368999999999
Q ss_pred HHHHHhhhhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEE
Q 004428 462 LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTV 540 (754)
Q Consensus 462 Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTl 540 (754)
|.+++.. ....++.+.++||||||.|+. ++...+..|+ ..+|.+ +|++
T Consensus 163 l~~~l~~-------~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~---~~~~~~---------------------~q~~ 211 (242)
T 3fe2_A 163 LIDFLEC-------GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIV---DQIRPD---------------------RQTL 211 (242)
T ss_dssp HHHHHHH-------TSCCCTTCCEEEETTHHHHHHTTCHHHHHHHH---TTSCSS---------------------CEEE
T ss_pred HHHHHHc-------CCCCcccccEEEEeCHHHHhhhCcHHHHHHHH---HhCCcc---------------------ceEE
Confidence 9999863 334689999999999999984 4444555554 444543 8999
Q ss_pred EEcCCCCHHHHHHHHHhhcCCCceEEE
Q 004428 541 LLSYHPNPEINAFFNHHCANYQGKVKL 567 (754)
Q Consensus 541 lFSAt~~peinsL~~~~~~N~~G~Vkv 567 (754)
+||||+++++..+++.++.|+ -.|.+
T Consensus 212 ~~SAT~~~~~~~~~~~~l~~~-~~i~~ 237 (242)
T 3fe2_A 212 MWSATWPKEVRQLAEDFLKDY-IHINI 237 (242)
T ss_dssp EEESCCCHHHHHHHHHHCSSC-EEEEE
T ss_pred EEEeecCHHHHHHHHHHCCCC-EEEEe
Confidence 999999999999999999985 34443
No 48
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.95 E-value=5.9e-28 Score=285.24 Aligned_cols=329 Identities=13% Similarity=0.135 Sum_probs=219.9
Q ss_pred HHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCC------ccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCcc
Q 004428 240 KLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSY------RDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLV 313 (754)
Q Consensus 240 ~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y------~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V 313 (754)
.+++.+.+. .++ . |||.|+++++.+.++ .|++.++.|| +|||.+|++++++++..
T Consensus 356 ~~~~~~~~~---lpf-~-lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TG---------SGKTlvall~il~~l~~----- 416 (780)
T 1gm5_A 356 KLAEEFIKS---LPF-K-LTNAQKRAHQEIRNDMISEKPMNRLLQGDVG---------SGKTVVAQLAILDNYEA----- 416 (780)
T ss_dssp HHHHHHHHH---SSS-C-CCHHHHHHHHHHHHHHHSSSCCCCEEECCSS---------SSHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHh---CCC-C-CCHHHHHHHHHHHhhccccCCCcEEEEcCCC---------CCHHHHHHHHHHHHHHc-----
Confidence 344554433 466 4 899999999999876 5999999998 89999999999998731
Q ss_pred ccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCcccc
Q 004428 314 TKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEE 393 (754)
Q Consensus 314 ~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~ 393 (754)
.++||||+|||+||.|+.+.+.++.+... + +....+|+...
T Consensus 417 ------------------------------g~qvlvlaPtr~La~Q~~~~l~~~~~~~g-i------~v~~l~G~~~~-- 457 (780)
T 1gm5_A 417 ------------------------------GFQTAFMVPTSILAIQHYRRTVESFSKFN-I------HVALLIGATTP-- 457 (780)
T ss_dssp ------------------------------TSCEEEECSCHHHHHHHHHHHHHHHTCSS-C------CEEECCSSSCH--
T ss_pred ------------------------------CCeEEEEeCcHHHHHHHHHHHHHHhhhcC-c------eEEEEeCCCCH--
Confidence 25799999999999999999998864321 1 12222232210
Q ss_pred CcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhccc
Q 004428 394 DKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENK 473 (754)
Q Consensus 394 ~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k 473 (754)
+-.+..+.-... ..+||||+||..|...
T Consensus 458 -------------------------------------------~~r~~~~~~l~~-g~~~IvVgT~~ll~~~-------- 485 (780)
T 1gm5_A 458 -------------------------------------------SEKEKIKSGLRN-GQIDVVIGTHALIQED-------- 485 (780)
T ss_dssp -------------------------------------------HHHHHHHHHHHS-SCCCEEEECTTHHHHC--------
T ss_pred -------------------------------------------HHHHHHHHHHhc-CCCCEEEECHHHHhhh--------
Confidence 001112221111 3589999999876431
Q ss_pred ccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHH
Q 004428 474 EQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAF 553 (754)
Q Consensus 474 ~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL 553 (754)
..++.+.++||||||+|-...+. .+ +. . ....|+|++|||..|....+
T Consensus 486 ----~~~~~l~lVVIDEaHr~g~~qr~-------~l-------------------~~-~-~~~~~vL~mSATp~p~tl~~ 533 (780)
T 1gm5_A 486 ----VHFKNLGLVIIDEQHRFGVKQRE-------AL-------------------MN-K-GKMVDTLVMSATPIPRSMAL 533 (780)
T ss_dssp ----CCCSCCCEEEEESCCCC-----C-------CC-------------------CS-S-SSCCCEEEEESSCCCHHHHH
T ss_pred ----hhccCCceEEecccchhhHHHHH-------HH-------------------HH-h-CCCCCEEEEeCCCCHHHHHH
Confidence 24788999999999996311110 00 00 0 12379999999998876554
Q ss_pred HHHhhcCCCceEEEeec-ccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh--cCCCcEEEEecch--
Q 004428 554 FNHHCANYQGKVKLACE-YKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD--SIQGGIMLFLSSY-- 628 (754)
Q Consensus 554 ~~~~~~N~~G~Vkv~~~-~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy-- 628 (754)
.. ..+.. +.+... ..| ...|...+. ... +.. .++..+.. ....+++||||+.
T Consensus 534 ~~--~g~~~--~s~i~~~p~~-----r~~i~~~~~--~~~--------~~~----~l~~~i~~~l~~g~qvlVf~~~ie~ 590 (780)
T 1gm5_A 534 AF--YGDLD--VTVIDEMPPG-----RKEVQTMLV--PMD--------RVN----EVYEFVRQEVMRGGQAFIVYPLIEE 590 (780)
T ss_dssp HH--TCCSS--CEEECCCCSS-----CCCCEECCC--CSS--------THH----HHHHHHHHHTTTSCCBCCBCCCC--
T ss_pred HH--hCCcc--eeeeeccCCC-----CcceEEEEe--ccc--------hHH----HHHHHHHHHHhcCCcEEEEecchhh
Confidence 32 22211 222111 011 112222111 111 111 12222222 2356899999965
Q ss_pred ------hcHHHHHHHHHh---CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC
Q 004428 629 ------FEFVRLRNFLKS---QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE 699 (754)
Q Consensus 629 ------~d~vrlrn~Lk~---~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~ 699 (754)
..+..+...|++ .++.+..+|+.+++.+|.+++..|++|+++|||+|+++. +|+||++|++||+|++|.
T Consensus 591 se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie--~GIDiP~v~~VIi~d~~r 668 (780)
T 1gm5_A 591 SDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE--VGIDVPRANVMVIENPER 668 (780)
T ss_dssp ------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC--SCSCCTTCCEEEBCSCSS
T ss_pred hhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC--ccccCCCCCEEEEeCCCC
Confidence 447788888988 478999999999999999999999999999999999999 999999999999999997
Q ss_pred C-CCchhhhccccCCCC-CceEEEEech---hcHHHHHHHh
Q 004428 700 R-KEFYPEIVNMLEGSH-NMTCTVLFSR---FDMLRLERIV 735 (754)
Q Consensus 700 ~-pefY~erigrt~ra~-~g~~~~L~sk---~D~~~LErIV 735 (754)
. ...|.+|+||+||.+ .|.|+.++++ .+..+|+.+.
T Consensus 669 ~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl~~l~ 709 (780)
T 1gm5_A 669 FGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLRFFT 709 (780)
T ss_dssp SCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHHHHHH
Confidence 4 566778999999987 6899999873 3344555444
No 49
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.95 E-value=8.6e-27 Score=259.23 Aligned_cols=318 Identities=9% Similarity=0.085 Sum_probs=215.5
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|+|.|.++++.+++++|++.++.|| +|||.+|+++++..+...
T Consensus 114 l~~~Q~~ai~~~~~~~~~ll~~~tG---------sGKT~~~~~~~~~~~~~~---------------------------- 156 (510)
T 2oca_A 114 PHWYQKDAVFEGLVNRRRILNLPTS---------AGRSLIQALLARYYLENY---------------------------- 156 (510)
T ss_dssp CCHHHHHHHHHHHHHSEEEEECCST---------TTHHHHHHHHHHHHHHHC----------------------------
T ss_pred CCHHHHHHHHHHHhcCCcEEEeCCC---------CCHHHHHHHHHHHHHhCC----------------------------
Confidence 7999999999999999999999998 899999999888776421
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
+++||||+||++||.|+.+.+.++..... .+....+|+.
T Consensus 157 ------~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~-------~~v~~~~~~~---------------------------- 195 (510)
T 2oca_A 157 ------EGKILIIVPTTALTTQMADDFVDYRLFSH-------AMIKKIGGGA---------------------------- 195 (510)
T ss_dssp ------SSEEEEEESSHHHHHHHHHHHHHTTSSCG-------GGEEECGGGC----------------------------
T ss_pred ------CCeEEEEECcHHHHHHHHHHHHHhhcCCc-------cceEEEecCC----------------------------
Confidence 34899999999999999999988743221 0111112211
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
. ...+ + ..+++|+|+||..|... ...++..+.++||||||++..
T Consensus 196 ----------~---------~~~~---~---~~~~~I~i~T~~~l~~~----------~~~~~~~~~liIiDE~H~~~~- 239 (510)
T 2oca_A 196 ----------S---------KDDK---Y---KNDAPVVVGTWQTVVKQ----------PKEWFSQFGMMMNDECHLATG- 239 (510)
T ss_dssp ----------C---------TTGG---G---CTTCSEEEEEHHHHTTS----------CGGGGGGEEEEEEETGGGCCH-
T ss_pred ----------c---------cccc---c---ccCCcEEEEeHHHHhhc----------hhhhhhcCCEEEEECCcCCCc-
Confidence 0 0001 1 14689999999976431 224678899999999999874
Q ss_pred CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHH-hhcCCCceEEEeecc-----
Q 004428 498 NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNH-HCANYQGKVKLACEY----- 571 (754)
Q Consensus 498 Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~-~~~N~~G~Vkv~~~~----- 571 (754)
.++..++ ..++. .++.|++|||.+.....++.. .+.. .+.+....
T Consensus 240 --~~~~~il---~~~~~---------------------~~~~l~lSATp~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 290 (510)
T 2oca_A 240 --KSISSII---SGLNN---------------------CMFKFGLSGSLRDGKANIMQYVGMFG---EIFKPVTTSKLME 290 (510)
T ss_dssp --HHHHHHG---GGCTT---------------------CCEEEEEESCGGGCSSCHHHHHHHHC---SEECCCCCC----
T ss_pred --ccHHHHH---Hhccc---------------------CcEEEEEEeCCCCCcccHHHhHHhhC---CeEEeeCHHHHhh
Confidence 2333333 33332 278999999997654222211 1111 11111100
Q ss_pred cCcccccccceeEEEEEeccC--------cccc------hhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHH
Q 004428 572 KGVLPKVLLNVRQIYERFNAD--------SIAK------ADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNF 637 (754)
Q Consensus 572 ~g~i~~v~~~I~Q~f~r~~~~--------s~~~------~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~ 637 (754)
.|.+. ...+..+....+.. .... ....|.... ..++..+.......+|||++ ......|.+.
T Consensus 291 ~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~ 366 (510)
T 2oca_A 291 DGQVT--ELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWI-AKLAIKLAQKDENAFVMFKH-VSHGKAIFDL 366 (510)
T ss_dssp -------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHH-HHHHHHHHTTTCEEEEEESS-HHHHHHHHHH
T ss_pred CCcCC--CceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHH-HHHHHHHHhcCCCeEEEEec-HHHHHHHHHH
Confidence 11111 11233333332210 0000 001122221 22233322224455666666 8888899999
Q ss_pred HHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc-ccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCCC
Q 004428 638 LKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT-ERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHN 716 (754)
Q Consensus 638 Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T-ErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~~ 716 (754)
|.+.+..+..+|+.+++.+|.+++..|++|+.+|||+| +.+. +|+||++|++||+|++|.++..|.+++||+||.+.
T Consensus 367 L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~--~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~ 444 (510)
T 2oca_A 367 IKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS--TGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHG 444 (510)
T ss_dssp HHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH--HSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTC
T ss_pred HHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh--cccccccCcEEEEeCCCCCHHHHHHHHhcccccCC
Confidence 99998899999999999999999999999999999999 9999 99999999999999999999999999999999875
Q ss_pred ce-EEEEec
Q 004428 717 MT-CTVLFS 724 (754)
Q Consensus 717 g~-~~~L~s 724 (754)
+. ++.+|+
T Consensus 445 ~~~~v~i~~ 453 (510)
T 2oca_A 445 SKTIATVWD 453 (510)
T ss_dssp CCCCCEEEE
T ss_pred CCceEEEEE
Confidence 43 555555
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.95 E-value=1.3e-28 Score=273.95 Aligned_cols=275 Identities=11% Similarity=0.098 Sum_probs=190.1
Q ss_pred HHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCC
Q 004428 263 RSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGF 342 (754)
Q Consensus 263 ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGf 342 (754)
......+.+++|++++++|| +|||.+|++|+|+++++.
T Consensus 12 ~~~~~~l~~~~~vlv~a~TG---------sGKT~~~~l~il~~~~~~--------------------------------- 49 (459)
T 2z83_A 12 RGSPNMLRKRQMTVLDLHPG---------SGKTRKILPQIIKDAIQQ--------------------------------- 49 (459)
T ss_dssp ---CGGGSTTCEEEECCCTT---------SCTTTTHHHHHHHHHHHT---------------------------------
T ss_pred HHHHHHHhcCCcEEEECCCC---------CCHHHHHHHHHHHHHHhC---------------------------------
Confidence 33366678899999999998 899999999999998632
Q ss_pred CCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCcee
Q 004428 343 TRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQI 422 (754)
Q Consensus 343 tRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~ 422 (754)
.+++|||+|||+||.|+.+.+..+. + ++. -+.
T Consensus 50 -~~~~lvl~Ptr~La~Q~~~~l~g~~-------v----~~~--~~~---------------------------------- 81 (459)
T 2z83_A 50 -RLRTAVLAPTRVVAAEMAEALRGLP-------V----RYQ--TSA---------------------------------- 81 (459)
T ss_dssp -TCCEEEEECSHHHHHHHHHHTTTSC-------E----EEC--C------------------------------------
T ss_pred -CCcEEEECchHHHHHHHHHHhcCce-------E----eEE--ecc----------------------------------
Confidence 3689999999999999998876221 1 000 000
Q ss_pred eccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhh-----hhc
Q 004428 423 LFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADII-----LMQ 497 (754)
Q Consensus 423 lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~m-----LmQ 497 (754)
+.+. -+ .+.-|.+.|.+.|...+-. ...|+.+.++||||||.+ +.
T Consensus 82 ---------------~~~~----~t--~~~~i~~~~~~~l~~~l~~--------~~~l~~~~~iViDEaH~~~~~~~~~- 131 (459)
T 2z83_A 82 ---------------VQRE----HQ--GNEIVDVMCHATLTHRLMS--------PNRVPNYNLFVMDEAHFTDPASIAA- 131 (459)
T ss_dssp ---------------------------CCCSEEEEEHHHHHHHHHS--------CC-CCCCSEEEESSTTCCSHHHHHH-
T ss_pred ---------------cccC----CC--CCcEEEEEchHHHHHHhhc--------cccccCCcEEEEECCccCCchhhHH-
Confidence 0000 00 1234666777766544431 135899999999999983 32
Q ss_pred CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccc
Q 004428 498 NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPK 577 (754)
Q Consensus 498 Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~ 577 (754)
+.++..+. ..| .+|+|+||||+++++..+... +.+ +...
T Consensus 132 -~~~~~~~~----~~~----------------------~~~~il~SAT~~~~~~~~~~~---~~p--i~~~--------- 170 (459)
T 2z83_A 132 -RGYIATKV----ELG----------------------EAAAIFMTATPPGTTDPFPDS---NAP--IHDL--------- 170 (459)
T ss_dssp -HHHHHHHH----HTT----------------------SCEEEEECSSCTTCCCSSCCC---SSC--EEEE---------
T ss_pred -HHHHHHHh----ccC----------------------CccEEEEEcCCCcchhhhccC---CCC--eEEe---------
Confidence 22333222 112 289999999999765332211 111 1110
Q ss_pred cccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHH
Q 004428 578 VLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDI 657 (754)
Q Consensus 578 v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r 657 (754)
.+ .++.... .. ++..+. ...+++||||++...+..|.+.|++.++.+..+|+. +|
T Consensus 171 -----~~---~~~~~~~----~~--------~~~~l~-~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R 225 (459)
T 2z83_A 171 -----QD---EIPDRAW----SS--------GYEWIT-EYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SY 225 (459)
T ss_dssp -----EC---CCCSSCC----SS--------CCHHHH-HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CC
T ss_pred -----cc---cCCcchh----HH--------HHHHHH-hcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HH
Confidence 00 0111100 00 111111 236799999999999999999999999999999983 67
Q ss_pred HHHHHHHhcCCccEEEEcccccccCccccCCCCeEEE--------------------ccCCCCCCchhhhccccCCCC--
Q 004428 658 SRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLII--------------------YSLPERKEFYPEIVNMLEGSH-- 715 (754)
Q Consensus 658 ~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIf--------------------Y~lP~~pefY~erigrt~ra~-- 715 (754)
.++...|++|+.+|||+|+++. ||+||++ .+||+ |++|.++..|.||+||+||.+
T Consensus 226 ~~~~~~f~~g~~~iLVaT~v~~--~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~ 302 (459)
T 2z83_A 226 DTEYPKCKNGDWDFVITTDISE--MGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ 302 (459)
T ss_dssp CCCGGGSSSCCCSEEEESSCC-----CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC
T ss_pred HHHHhhccCCCceEEEECChHH--hCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCC
Confidence 7889999999999999999999 9999999 99999 789999999999999999987
Q ss_pred CceEEEEechh
Q 004428 716 NMTCTVLFSRF 726 (754)
Q Consensus 716 ~g~~~~L~sk~ 726 (754)
.|.|++|++..
T Consensus 303 ~G~~~~~~~~~ 313 (459)
T 2z83_A 303 VGDEYHYGGAT 313 (459)
T ss_dssp CCEEEEECSCC
T ss_pred CCeEEEEEccc
Confidence 68999999875
No 51
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.95 E-value=1e-26 Score=232.35 Aligned_cols=211 Identities=19% Similarity=0.201 Sum_probs=161.0
Q ss_pred CcccCCCCCCcCC-CCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHH
Q 004428 222 GECFLKDDNLYSD-YGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLM 300 (754)
Q Consensus 222 ~~~~~~~~~~f~~-l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~L 300 (754)
...+|++..+|.+ +++++.+++++.+. |+.. |||+|++++|.+++++|++++++|| +|||.+|++
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~l~~apTG---------sGKT~~~~l 76 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRV----GILK-PTPIQSQAWPIILQGIDLIVVAQTG---------TGKTLSYLM 76 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHH----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SCHHHHHHH
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------ChHHHHHHH
Confidence 4568888999999 89999999999886 7876 8999999999999999999999998 899999999
Q ss_pred HHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccc
Q 004428 301 HSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHID 380 (754)
Q Consensus 301 h~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~ 380 (754)
|++.++...... + ..-..+++|||+|||+||.|+.+.+.++.... .
T Consensus 77 ~~~~~l~~~~~~-------------------------~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~--------~ 122 (228)
T 3iuy_A 77 PGFIHLDSQPIS-------------------------R-EQRNGPGMLVLTPTRELALHVEAECSKYSYKG--------L 122 (228)
T ss_dssp HHHHHHC-----------------------------------CCCSEEEECSSHHHHHHHHHHHHHHCCTT--------C
T ss_pred HHHHHHHhccch-------------------------h-hccCCCcEEEEeCCHHHHHHHHHHHHHhcccC--------c
Confidence 999999643210 0 01135899999999999999999999986322 1
Q ss_pred ccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCch
Q 004428 381 RFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPI 460 (754)
Q Consensus 381 Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPl 460 (754)
+....+|+... .-..+.+. .++||||+||+
T Consensus 123 ~~~~~~~~~~~---------------------------------------------~~~~~~~~-----~~~~iiv~Tp~ 152 (228)
T 3iuy_A 123 KSICIYGGRNR---------------------------------------------NGQIEDIS-----KGVDIIIATPG 152 (228)
T ss_dssp CEEEECC---------------------------------------------------CHHHHH-----SCCSEEEECHH
T ss_pred eEEEEECCCCh---------------------------------------------HHHHHHhc-----CCCCEEEECHH
Confidence 22233443210 00111221 46899999999
Q ss_pred hHHHHHhhhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccE
Q 004428 461 NLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQT 539 (754)
Q Consensus 461 gLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQT 539 (754)
+|..++.. ....++.+.++||||||+|+ +++...+..|+..+ |. .+|+
T Consensus 153 ~l~~~~~~-------~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~---~~---------------------~~~~ 201 (228)
T 3iuy_A 153 RLNDLQMN-------NSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDV---RP---------------------DRQT 201 (228)
T ss_dssp HHHHHHHT-------TCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHS---CS---------------------SCEE
T ss_pred HHHHHHHc-------CCcCcccceEEEEECHHHHhccchHHHHHHHHHhC---Cc---------------------CCeE
Confidence 99998862 34468999999999999998 44455667666554 33 2899
Q ss_pred EEEcCCCCHHHHHHHHHhhcCC
Q 004428 540 VLLSYHPNPEINAFFNHHCANY 561 (754)
Q Consensus 540 llFSAt~~peinsL~~~~~~N~ 561 (754)
++||||+++++..++..++.|+
T Consensus 202 l~~SAT~~~~~~~~~~~~l~~p 223 (228)
T 3iuy_A 202 VMTSATWPDTVRQLALSYLKDP 223 (228)
T ss_dssp EEEESCCCHHHHHHHHTTCSSC
T ss_pred EEEEeeCCHHHHHHHHHHCCCC
Confidence 9999999999999999999885
No 52
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.94 E-value=3.8e-26 Score=230.94 Aligned_cols=206 Identities=16% Similarity=0.212 Sum_probs=155.6
Q ss_pred cccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHH
Q 004428 223 ECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHS 302 (754)
Q Consensus 223 ~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~ 302 (754)
.+.|....+|.+++|++.|++++.+. |+.. |+|+|+++++.+++++|++++++|| +|||.+|++++
T Consensus 23 ~~~~~~~~~f~~l~l~~~l~~~l~~~----g~~~-~~~~Q~~ai~~i~~~~~~li~apTG---------sGKT~~~~l~~ 88 (237)
T 3bor_A 23 SNWNEIVDNFDDMNLKESLLRGIYAY----GFEK-PSAIQQRAIIPCIKGYDVIAQAQSG---------TGKTATFAISI 88 (237)
T ss_dssp ----CCCCSGGGSCCCHHHHHHHHHH----TCCS-CCHHHHHHHHHHHTTCCEEECCCSS---------HHHHHHHHHHH
T ss_pred CCCCCccCChhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------CcHHHHHHHHH
Confidence 34556678899999999999999875 7875 8999999999999999999999998 99999999999
Q ss_pred HHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccc
Q 004428 303 LNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRF 382 (754)
Q Consensus 303 LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf 382 (754)
++++... ...+++|||+|||+||.|+.+.+.+++.... .+.
T Consensus 89 l~~l~~~--------------------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-------~~~ 129 (237)
T 3bor_A 89 LQQLEIE--------------------------------FKETQALVLAPTRELAQQIQKVILALGDYMG-------ATC 129 (237)
T ss_dssp HHHCCTT--------------------------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTTT-------CCE
T ss_pred HHHHHhc--------------------------------CCCceEEEEECcHHHHHHHHHHHHHHhhhcC-------ceE
Confidence 9988422 1257899999999999999999999875431 122
Q ss_pred ccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhH
Q 004428 383 CDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINL 462 (754)
Q Consensus 383 ~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgL 462 (754)
...+|+... .-....+ .. ..++|||+||++|
T Consensus 130 ~~~~g~~~~---------------------------------------------~~~~~~l--~~--~~~~Ilv~Tp~~l 160 (237)
T 3bor_A 130 HACIGGTNV---------------------------------------------RNEMQKL--QA--EAPHIVVGTPGRV 160 (237)
T ss_dssp EEECC--------------------------------------------------------------CCCSEEEECHHHH
T ss_pred EEEECCCch---------------------------------------------HHHHHHH--hc--CCCCEEEECHHHH
Confidence 223333210 0000111 11 2489999999999
Q ss_pred HHHHhhhhcccccCcccCCceeEEEEecchhhhhcC-chHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEE
Q 004428 463 HQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQN-WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVL 541 (754)
Q Consensus 463 r~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQN-w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTll 541 (754)
..++.. ....++.+.++||||||+|+..+ ...+..|+..+ |.. +|+|+
T Consensus 161 ~~~l~~-------~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~---~~~---------------------~~~i~ 209 (237)
T 3bor_A 161 FDMLNR-------RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL---NTS---------------------IQVVL 209 (237)
T ss_dssp HHHHHT-------TSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHS---CTT---------------------CEEEE
T ss_pred HHHHHh-------CCcCcccCcEEEECCchHhhccCcHHHHHHHHHhC---CCC---------------------CeEEE
Confidence 998862 34568899999999999998544 45566666554 332 89999
Q ss_pred EcCCCCHHHHHHHHHhhcCC
Q 004428 542 LSYHPNPEINAFFNHHCANY 561 (754)
Q Consensus 542 FSAt~~peinsL~~~~~~N~ 561 (754)
||||+++++..+++.++.|+
T Consensus 210 ~SAT~~~~~~~~~~~~l~~p 229 (237)
T 3bor_A 210 LSATMPTDVLEVTKKFMRDP 229 (237)
T ss_dssp ECSSCCHHHHHHHHHHCSSC
T ss_pred EEEecCHHHHHHHHHHCCCC
Confidence 99999999999999999885
No 53
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.94 E-value=3.7e-26 Score=227.39 Aligned_cols=208 Identities=13% Similarity=0.218 Sum_probs=156.5
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
..+|.+++|++.+++++.+. |+.. |+|+|+++++.+++++|++++++|| +|||.+|++|+++++.+
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~lv~a~TG---------sGKT~~~~~~~l~~l~~ 68 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTL----RFYK-PTEIQERIIPGALRGESMVGQSQTG---------TGKTHAYLLPIMEKIKP 68 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHHTCCEEEECCSS---------HHHHHHHHHHHHHHCCT
T ss_pred CCCHhhCCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------ChHHHHHHHHHHHHHHh
Confidence 35799999999999999874 7776 8999999999999999999999998 99999999999999853
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
.+ ..+++|||+|||+||.|+.+.+.++...... ....+....+|+
T Consensus 69 ~~--------------------------------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~---~~~~~~~~~~g~ 113 (219)
T 1q0u_A 69 ER--------------------------------AEVQAVITAPTRELATQIYHETLKITKFCPK---DRMIVARCLIGG 113 (219)
T ss_dssp TS--------------------------------CSCCEEEECSSHHHHHHHHHHHHHHHTTSCG---GGCCCEEEECCC
T ss_pred Cc--------------------------------CCceEEEEcCcHHHHHHHHHHHHHHhhhccc---ccceEEEEEeCC
Confidence 21 2478999999999999999999988643210 001122222332
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
.. .. +..+.+. .++||||+||++|..++..
T Consensus 114 ~~-----------------------------------------------~~-~~~~~~~--~~~~Iiv~Tp~~l~~~l~~ 143 (219)
T 1q0u_A 114 TD-----------------------------------------------KQ-KALEKLN--VQPHIVIGTPGRINDFIRE 143 (219)
T ss_dssp SH-----------------------------------------------HH-HTTCCCS--SCCSEEEECHHHHHHHHHT
T ss_pred CC-----------------------------------------------HH-HHHHHcC--CCCCEEEeCHHHHHHHHHc
Confidence 21 01 1111111 3689999999999998862
Q ss_pred hhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
....++.+.++||||||.|+. ++...+..|+. .+|+. +|+++||||++
T Consensus 144 -------~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~---~~~~~---------------------~~~l~~SAT~~ 192 (219)
T 1q0u_A 144 -------QALDVHTAHILVVDEADLMLDMGFITDVDQIAA---RMPKD---------------------LQMLVFSATIP 192 (219)
T ss_dssp -------TCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHH---TSCTT---------------------CEEEEEESCCC
T ss_pred -------CCCCcCcceEEEEcCchHHhhhChHHHHHHHHH---hCCcc---------------------cEEEEEecCCC
Confidence 334589999999999999984 33445555544 44543 89999999999
Q ss_pred HHHHHHHHHhhcCCCceEEE
Q 004428 548 PEINAFFNHHCANYQGKVKL 567 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv 567 (754)
+++..+++.++.|+ ..|.+
T Consensus 193 ~~~~~~~~~~~~~p-~~~~~ 211 (219)
T 1q0u_A 193 EKLKPFLKKYMENP-TFVHV 211 (219)
T ss_dssp GGGHHHHHHHCSSC-EEEEC
T ss_pred HHHHHHHHHHcCCC-eEEEe
Confidence 99999999999985 34544
No 54
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.94 E-value=8.1e-26 Score=227.02 Aligned_cols=205 Identities=21% Similarity=0.234 Sum_probs=156.4
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHH
Q 004428 227 KDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHI 306 (754)
Q Consensus 227 ~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv 306 (754)
+...+|++++|++.+++++.+. |+.. |+|+|++++|.+++++|++++++|| +|||.+|++|+++++
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~----~~~~-~~~~Q~~~i~~~~~~~~~li~a~TG---------sGKT~~~~~~~l~~l 87 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQEA----QYRL-VTEIQKQTIGLALQGKDVLGAAKTG---------SGKTLAFLVPVLEAL 87 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHHT----TCCB-CCHHHHHHHHHHHTTCCEEEECCTT---------SCHHHHHHHHHHHHH
T ss_pred cccCCHhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEEeCCC---------CcHHHHHHHHHHHHH
Confidence 3467799999999999999874 7765 8999999999999999999999998 899999999999999
Q ss_pred hhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccccc
Q 004428 307 FRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEF 386 (754)
Q Consensus 307 ~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ef 386 (754)
++.+. .....+++|||+|||+||.|+.+.+.++..... .+....+
T Consensus 88 ~~~~~----------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-------~~~~~~~ 132 (236)
T 2pl3_A 88 YRLQW----------------------------TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHD-------FSAGLII 132 (236)
T ss_dssp HHTTC----------------------------CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSS-------CCEEEEC
T ss_pred Hhhcc----------------------------cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC-------eeEEEEE
Confidence 86421 001257899999999999999999999865321 1111122
Q ss_pred CCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHH
Q 004428 387 GTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKM 466 (754)
Q Consensus 387 g~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI 466 (754)
|+. .... ..+.. .++||||+||++|..++
T Consensus 133 g~~-----------------------------------------------~~~~-~~~~~---~~~~iiv~Tp~~l~~~l 161 (236)
T 2pl3_A 133 GGK-----------------------------------------------DLKH-EAERI---NNINILVCTPGRLLQHM 161 (236)
T ss_dssp CC-------------------------------------------------CHH-HHHHH---TTCSEEEECHHHHHHHH
T ss_pred CCC-----------------------------------------------CHHH-HHHhC---CCCCEEEECHHHHHHHH
Confidence 221 1111 11111 46899999999999988
Q ss_pred hhhhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCC
Q 004428 467 TKAEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYH 545 (754)
Q Consensus 467 ~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt 545 (754)
.. .....++.+.++||||||+|+. ++...+..|+. .+|.. +|+++||||
T Consensus 162 ~~------~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~---~~~~~---------------------~~~l~~SAT 211 (236)
T 2pl3_A 162 DE------TVSFHATDLQMLVLDEADRILDMGFADTMNAVIE---NLPKK---------------------RQTLLFSAT 211 (236)
T ss_dssp HH------CSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHH---TSCTT---------------------SEEEEEESS
T ss_pred Hh------cCCcccccccEEEEeChHHHhcCCcHHHHHHHHH---hCCCC---------------------CeEEEEEee
Confidence 63 1234588999999999999984 33445555544 44543 899999999
Q ss_pred CCHHHHHHHHHhhcCC
Q 004428 546 PNPEINAFFNHHCANY 561 (754)
Q Consensus 546 ~~peinsL~~~~~~N~ 561 (754)
+++.+..+++.++.|+
T Consensus 212 ~~~~~~~~~~~~~~~p 227 (236)
T 2pl3_A 212 QTKSVKDLARLSLKNP 227 (236)
T ss_dssp CCHHHHHHHHHSCSSC
T ss_pred CCHHHHHHHHHhCCCC
Confidence 9999999999999885
No 55
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.94 E-value=1e-25 Score=230.56 Aligned_cols=202 Identities=20% Similarity=0.244 Sum_probs=156.4
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHH
Q 004428 227 KDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHI 306 (754)
Q Consensus 227 ~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv 306 (754)
....+|.+++|++.+++++..+ |+.. |+|+|++++|.+++++|++++++|| +|||.+|++++++++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~i~~~~~~lv~a~TG---------sGKT~~~~~~il~~l 105 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQL----GWTK-PTKIQIEAIPLALQGRDIIGLAETG---------SGKTGAFALPILNAL 105 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SCHHHHHHHHHHHHH
T ss_pred cccCCHHHcCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhCCCCEEEEcCCC---------CCchhHhHHHHHHHH
Confidence 3457899999999999999875 7765 8999999999999999999999998 899999999999999
Q ss_pred hhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccccc
Q 004428 307 FRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEF 386 (754)
Q Consensus 307 ~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ef 386 (754)
.+.. .++++|||+|||+||.|+.+.+.+++.... .+....+
T Consensus 106 ~~~~--------------------------------~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~-------~~~~~~~ 146 (249)
T 3ber_A 106 LETP--------------------------------QRLFALVLTPTRELAFQISEQFEALGSSIG-------VQSAVIV 146 (249)
T ss_dssp HHSC--------------------------------CSSCEEEECSSHHHHHHHHHHHHHHHGGGT-------CCEEEEC
T ss_pred hcCC--------------------------------CCceEEEEeCCHHHHHHHHHHHHHHhccCC-------eeEEEEE
Confidence 7541 257899999999999999999998854321 1112222
Q ss_pred CCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHH
Q 004428 387 GTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKM 466 (754)
Q Consensus 387 g~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI 466 (754)
|+. ...+....+. .+++||||||++|..++
T Consensus 147 g~~-----------------------------------------------~~~~~~~~~~---~~~~I~v~Tp~~l~~~l 176 (249)
T 3ber_A 147 GGI-----------------------------------------------DSMSQSLALA---KKPHIIIATPGRLIDHL 176 (249)
T ss_dssp TTS-----------------------------------------------CHHHHHHHHH---TCCSEEEECHHHHHHHH
T ss_pred CCC-----------------------------------------------ChHHHHHHhc---CCCCEEEECHHHHHHHH
Confidence 221 1111111221 47999999999999988
Q ss_pred hhhhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCC
Q 004428 467 TKAEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYH 545 (754)
Q Consensus 467 ~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt 545 (754)
.. .....++.+.++||||||+|+. ++...+..|+. .+|.. +|+|+||||
T Consensus 177 ~~------~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~---~~~~~---------------------~~~l~~SAT 226 (249)
T 3ber_A 177 EN------TKGFNLRALKYLVMDEADRILNMDFETEVDKILK---VIPRD---------------------RKTFLFSAT 226 (249)
T ss_dssp HH------STTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHH---SSCSS---------------------SEEEEEESS
T ss_pred Hc------CCCcCccccCEEEEcChhhhhccChHHHHHHHHH---hCCCC---------------------CeEEEEecc
Confidence 63 1223489999999999999984 33445555554 44543 899999999
Q ss_pred CCHHHHHHHHHhhcCC
Q 004428 546 PNPEINAFFNHHCANY 561 (754)
Q Consensus 546 ~~peinsL~~~~~~N~ 561 (754)
+++++..+++.++.|+
T Consensus 227 ~~~~v~~~~~~~l~~p 242 (249)
T 3ber_A 227 MTKKVQKLQRAALKNP 242 (249)
T ss_dssp CCHHHHHHHHHHCSSC
T ss_pred CCHHHHHHHHHHCCCC
Confidence 9999999999999985
No 56
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.94 E-value=8.2e-26 Score=228.20 Aligned_cols=215 Identities=15% Similarity=0.157 Sum_probs=159.7
Q ss_pred cccCCCCCCcCCC----CCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHH
Q 004428 223 ECFLKDDNLYSDY----GLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETY 298 (754)
Q Consensus 223 ~~~~~~~~~f~~l----~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay 298 (754)
..+|.++.+|.++ +|++.|++++.+. |+.. |||+|++++|.+++++|++++++|| +|||.+|
T Consensus 18 ~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~l~~a~TG---------sGKT~~~ 83 (245)
T 3dkp_A 18 TDLPDPIATFQQLDQEYKINSRLLQNILDA----GFQM-PTPIQMQAIPVMLHGRELLASAPTG---------SGKTLAF 83 (245)
T ss_dssp SSCCCCCSSHHHHHHHHCCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SCHHHHH
T ss_pred CCCCCcccCHHHhhhccCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------CcHHHHH
Confidence 4566778888877 8999999999875 8876 8999999999999999999999998 8999999
Q ss_pred HHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccc
Q 004428 299 LMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEH 378 (754)
Q Consensus 299 ~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~n 378 (754)
++|+++++.+.. -..++||||+|||+||.|+.+.+.++.....
T Consensus 84 ~l~~l~~l~~~~-------------------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~------ 126 (245)
T 3dkp_A 84 SIPILMQLKQPA-------------------------------NKGFRALIISPTRELASQIHRELIKISEGTG------ 126 (245)
T ss_dssp HHHHHHHHCSCC-------------------------------SSSCCEEEECSSHHHHHHHHHHHHHHTTTSC------
T ss_pred HHHHHHHHhhcc-------------------------------cCCceEEEEeCCHHHHHHHHHHHHHHhcccC------
Confidence 999999985421 1247899999999999999999999865432
Q ss_pred ccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeC
Q 004428 379 IDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVAS 458 (754)
Q Consensus 379 k~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVAS 458 (754)
.+....+|+.... . .+. .. ...++||||||
T Consensus 127 -~~~~~~~~~~~~~-------------------------------------~------~~~----~~--~~~~~~I~v~T 156 (245)
T 3dkp_A 127 -FRIHMIHKAAVAA-------------------------------------K------KFG----PK--SSKKFDILVTT 156 (245)
T ss_dssp -CCEECCCHHHHHH-------------------------------------T------TTS----TT--SCCCCCEEEEC
T ss_pred -ceEEEEecCccHH-------------------------------------H------Hhh----hh--hcCCCCEEEEC
Confidence 1111112211000 0 000 00 01468999999
Q ss_pred chhHHHHHhhhhcccccCcccCCceeEEEEecchhhhh----cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCC
Q 004428 459 PINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILM----QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSR 534 (754)
Q Consensus 459 PlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm----QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak 534 (754)
|++|..++.. ......|+.+.++||||||.|+. +++..+..++..+. +.
T Consensus 157 p~~l~~~l~~-----~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~--~~-------------------- 209 (245)
T 3dkp_A 157 PNRLIYLLKQ-----DPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT--SH-------------------- 209 (245)
T ss_dssp HHHHHHHHHS-----SSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCC--CT--------------------
T ss_pred HHHHHHHHHh-----CCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcC--CC--------------------
Confidence 9999999863 12234589999999999999984 34455555554431 11
Q ss_pred ccccEEEEcCCCCHHHHHHHHHhhcCCCceEEE
Q 004428 535 FYRQTVLLSYHPNPEINAFFNHHCANYQGKVKL 567 (754)
Q Consensus 535 ~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv 567 (754)
.+|+++||||+++++..+++.++.|+ ..|.+
T Consensus 210 -~~~~~~~SAT~~~~v~~~~~~~l~~p-~~i~~ 240 (245)
T 3dkp_A 210 -KVRRAMFSATFAYDVEQWCKLNLDNV-ISVSI 240 (245)
T ss_dssp -TCEEEEEESSCCHHHHHHHHHHSSSC-EEEEE
T ss_pred -CcEEEEEeccCCHHHHHHHHHhCCCC-EEEEe
Confidence 27999999999999999999999885 34443
No 57
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.94 E-value=1.3e-25 Score=225.68 Aligned_cols=206 Identities=17% Similarity=0.173 Sum_probs=154.9
Q ss_pred CcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHH
Q 004428 222 GECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMH 301 (754)
Q Consensus 222 ~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh 301 (754)
+...|.+..+|.+++|++.+.+.+.+. |+.. |+|+|++++|.+++++|++++++|| +|||.+|+++
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~l~~a~TG---------sGKT~~~~l~ 81 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAA----GFER-PSPVQLKAIPLGRCGLDLIVQAKSG---------TGKTCVFSTI 81 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SSHHHHHHHH
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------CcHHHHHHHH
Confidence 345566678899999999999999874 7865 8999999999999999999999998 8999999999
Q ss_pred HHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccc
Q 004428 302 SLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDR 381 (754)
Q Consensus 302 ~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~R 381 (754)
++.++.... ..+++|||+|||+||.|+.+.+.++......+ +
T Consensus 82 ~l~~l~~~~--------------------------------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~------~ 123 (230)
T 2oxc_A 82 ALDSLVLEN--------------------------------LSTQILILAPTREIAVQIHSVITAIGIKMEGL------E 123 (230)
T ss_dssp HHHHCCTTS--------------------------------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTC------C
T ss_pred HHHHHHhcC--------------------------------CCceEEEEeCCHHHHHHHHHHHHHHhcccCCc------e
Confidence 999985320 24789999999999999999999986432101 1
Q ss_pred cccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchh
Q 004428 382 FCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPIN 461 (754)
Q Consensus 382 f~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlg 461 (754)
....+| | ..... ..+.. .++||||+||++
T Consensus 124 ~~~~~g--------------------------------------~---------~~~~~-~~~~~---~~~~Iiv~Tp~~ 152 (230)
T 2oxc_A 124 CHVFIG--------------------------------------G---------TPLSQ-DKTRL---KKCHIAVGSPGR 152 (230)
T ss_dssp EEEECT--------------------------------------T---------SCHHH-HHHHT---TSCSEEEECHHH
T ss_pred EEEEeC--------------------------------------C---------CCHHH-HHHhc---cCCCEEEECHHH
Confidence 111122 1 11111 12222 468999999999
Q ss_pred HHHHHhhhhcccccCcccCCceeEEEEecchhhh-hc-CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccE
Q 004428 462 LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL-MQ-NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQT 539 (754)
Q Consensus 462 Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQ-Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQT 539 (754)
|..++.. ....++.+.++||||||+|+ ++ ++..+..|+..+ |.. +|+
T Consensus 153 l~~~~~~-------~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~---~~~---------------------~~~ 201 (230)
T 2oxc_A 153 IKQLIEL-------DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSL---PAS---------------------KQM 201 (230)
T ss_dssp HHHHHHT-------TSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHS---CSS---------------------CEE
T ss_pred HHHHHhc-------CCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhC---CCC---------------------CeE
Confidence 9998862 33458899999999999998 43 456677776654 432 799
Q ss_pred EEEcCCCCHHHHHHHHHhhcCC
Q 004428 540 VLLSYHPNPEINAFFNHHCANY 561 (754)
Q Consensus 540 llFSAt~~peinsL~~~~~~N~ 561 (754)
|+||||+++++..++..++.|+
T Consensus 202 l~lSAT~~~~~~~~~~~~~~~p 223 (230)
T 2oxc_A 202 LAVSATYPEFLANALTKYMRDP 223 (230)
T ss_dssp EEEESCCCHHHHHHHTTTCSSC
T ss_pred EEEEeccCHHHHHHHHHHcCCC
Confidence 9999999999999999988875
No 58
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=3.7e-25 Score=216.68 Aligned_cols=199 Identities=22% Similarity=0.342 Sum_probs=154.2
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
++|++++|++.|++++.+. |+.. |+|+|+++++.+++++|++++++|| +|||.+|++|+++++...
T Consensus 3 ~~f~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~lv~apTG---------sGKT~~~~~~~~~~~~~~ 68 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEM----GWEK-PSPIQEESIPIALSGRDILARAKNG---------TGKSGAYLIPLLERLDLK 68 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTT----TCCS-CCHHHHHHHHHHHTTCCEEEECCSS---------STTHHHHHHHHHHHCCTT
T ss_pred CChhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHccCCCEEEECCCC---------CchHHHHHHHHHHHhccc
Confidence 5699999999999999874 7765 8999999999999999999999998 899999999999988532
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
...+++|||+|||+||.|+.+.+.++...... .+....+|+.
T Consensus 69 --------------------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~------~~~~~~~g~~ 110 (206)
T 1vec_A 69 --------------------------------KDNIQAMVIVPTRELALQVSQICIQVSKHMGG------AKVMATTGGT 110 (206)
T ss_dssp --------------------------------SCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS------CCEEEECSSS
T ss_pred --------------------------------CCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC------ceEEEEeCCc
Confidence 12478999999999999999999998653210 1111122211
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
.......++. .+++|||+||++|..++..
T Consensus 111 -----------------------------------------------~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~- 139 (206)
T 1vec_A 111 -----------------------------------------------NLRDDIMRLD---DTVHVVIATPGRILDLIKK- 139 (206)
T ss_dssp -----------------------------------------------CHHHHHHHTT---SCCSEEEECHHHHHHHHHT-
T ss_pred -----------------------------------------------cHHHHHHhcC---CCCCEEEeCHHHHHHHHHc-
Confidence 1111112221 4689999999999998862
Q ss_pred hcccccCcccCCceeEEEEecchhhhhcC-chHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIILMQN-WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mLmQN-w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
....++.+.++||||||.|+..+ +..+..++..+ |+. +|+++||||+++
T Consensus 140 ------~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~---~~~---------------------~~~l~~SAT~~~ 189 (206)
T 1vec_A 140 ------GVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL---PKN---------------------RQILLYSATFPL 189 (206)
T ss_dssp ------TCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHS---CTT---------------------CEEEEEESCCCH
T ss_pred ------CCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhC---Ccc---------------------ceEEEEEeeCCH
Confidence 34568999999999999998543 45556665543 432 899999999999
Q ss_pred HHHHHHHHhhcCC
Q 004428 549 EINAFFNHHCANY 561 (754)
Q Consensus 549 einsL~~~~~~N~ 561 (754)
++..+++.++.|+
T Consensus 190 ~~~~~~~~~l~~p 202 (206)
T 1vec_A 190 SVQKFMNSHLEKP 202 (206)
T ss_dssp HHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999885
No 59
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.93 E-value=5.8e-26 Score=258.13 Aligned_cols=319 Identities=12% Similarity=0.034 Sum_probs=185.2
Q ss_pred CCHHHHHHhhhhhC-----CccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccc
Q 004428 258 HSSKQRSFFSLCNS-----YRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGIL 332 (754)
Q Consensus 258 pTpiQ~~~ip~i~~-----y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~ 332 (754)
++|.|.++++.+.. .++++.++.|| +|||.+ +++++.++++..-.
T Consensus 179 lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TG---------sGKT~~-~~~~~~~l~~~~~~-------------------- 228 (590)
T 3h1t_A 179 PRYYQQIAINRAVQSVLQGKKRSLITMATG---------TGKTVV-AFQISWKLWSARWN-------------------- 228 (590)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEEECTT---------SCHHHH-HHHHHHHHHHTTCC--------------------
T ss_pred chHHHHHHHHHHHHHHhcCCCceEEEecCC---------CChHHH-HHHHHHHHHhcccc--------------------
Confidence 79999999998875 46689999998 899999 56677777654200
Q ss_pred cccccccCCCCCceEEEEccchhHHHHHH-HHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 333 IGDAFLDRGFTRPKVLILLPLKSIALNVV-KRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 333 ~~~~~RDQGftRPkVLIL~PTRelA~qIv-~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
+......++||||+||++||.|+. +.+..+.....
T Consensus 229 -----~~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~~~~~~--------------------------------------- 264 (590)
T 3h1t_A 229 -----RTGDYRKPRILFLADRNVLVDDPKDKTFTPFGDARH--------------------------------------- 264 (590)
T ss_dssp -----SSCSSSCCCEEEEEC-----------CCTTTCSSEE---------------------------------------
T ss_pred -----cccccCCCeEEEEeCCHHHHHHHHHHHHHhcchhhh---------------------------------------
Confidence 001124589999999999999998 55544322110
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
...+ ..+ -.+.+|+|+||.+|...+... +......+..+.++|||||
T Consensus 265 -----------~~~~--------------~~~-----~~~~~I~v~T~~~l~~~~~~~---~~~~~~~~~~~~lvIiDEa 311 (590)
T 3h1t_A 265 -----------KIEG--------------GKV-----VKSREIYFAIYQSIASDERRP---GLYKEFPQDFFDLIIIDEC 311 (590)
T ss_dssp -----------ECCC----------------C-----CSSCSEEEEEGGGC------C---CGGGGSCTTSCSEEEESCC
T ss_pred -----------hhhc--------------cCC-----CCCCcEEEEEhhhhccccccc---cccccCCCCccCEEEEECC
Confidence 0000 000 135799999999999876411 0011112567899999999
Q ss_pred hhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEee-c
Q 004428 492 DIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLAC-E 570 (754)
Q Consensus 492 D~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~-~ 570 (754)
|++.......+..|++++ |. ++.|+||||.......-...++.++.-...+.. .
T Consensus 312 H~~~~~~~~~~~~il~~~---~~----------------------~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i 366 (590)
T 3h1t_A 312 HRGSARDNSNWREILEYF---EP----------------------AFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGI 366 (590)
T ss_dssp C---------CHHHHHHS---TT----------------------SEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHH
T ss_pred ccccccchHHHHHHHHhC---Cc----------------------ceEEEeccccccccchhHHHHcCCceEecCHHHHh
Confidence 999743223344555554 21 679999999774322112222222110000000 0
Q ss_pred ccCcccccccceeEEEEEec--------------------------cCccc--chhHHHHHHHHHHHhHHhhh-cCCCcE
Q 004428 571 YKGVLPKVLLNVRQIYERFN--------------------------ADSIA--KADDARLEYFTKKVFPKIKD-SIQGGI 621 (754)
Q Consensus 571 ~~g~i~~v~~~I~Q~f~r~~--------------------------~~s~~--~~~d~Rf~yF~~~iLp~l~~-~~~~~t 621 (754)
..|.+ ....-.-...+ ..... -....|.......+...+.. ...+++
T Consensus 367 ~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~ 442 (590)
T 3h1t_A 367 DDGFL----APYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKT 442 (590)
T ss_dssp HHTSS----CCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEE
T ss_pred hCCcc----CCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccE
Confidence 00100 00000000000 00000 00122333333333332332 235799
Q ss_pred EEEecchhcHHHHHHHHHhCCCc--------eEeecCCCCHHHHHHHHHHHhcCCcc---EEEEcccccccCccccCCCC
Q 004428 622 MLFLSSYFEFVRLRNFLKSQNAS--------FCLLGDYTEPSDISRARVWFFEGKRK---MILYTERSHFYHRYKIRGIQ 690 (754)
Q Consensus 622 LIFv~Sy~d~vrlrn~Lk~~~~~--------f~~Ihey~sq~~r~rar~~F~~G~~~---ILL~TErahffRr~dIkgV~ 690 (754)
||||++...+.+|...|++.+.. +..+|+.+++ +|.+++..|++|+.+ ||++|+.+. +|+||++|+
T Consensus 443 lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~--~GiDip~v~ 519 (590)
T 3h1t_A 443 IVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLT--TGVDAPTCK 519 (590)
T ss_dssp EEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTT--TTCCCTTEE
T ss_pred EEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhh--cCccchhee
Confidence 99999999999999999876443 6789998765 799999999999877 899999999 999999999
Q ss_pred eEEEccCCCCCCchhhhccccCCCC
Q 004428 691 NLIIYSLPERKEFYPEIVNMLEGSH 715 (754)
Q Consensus 691 ~VIfY~lP~~pefY~erigrt~ra~ 715 (754)
+||+|++|.++..|.|++||++|.+
T Consensus 520 ~Vi~~~~~~s~~~~~Q~iGR~~R~~ 544 (590)
T 3h1t_A 520 NVVLARVVNSMSEFKQIVGRGTRLR 544 (590)
T ss_dssp EEEEESCCCCHHHHHHHHTTSCCCB
T ss_pred EEEEEecCCChHHHHHHHhhhcccC
Confidence 9999999999999999999999965
No 60
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.93 E-value=4.5e-25 Score=219.21 Aligned_cols=203 Identities=18% Similarity=0.258 Sum_probs=156.7
Q ss_pred ccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHH
Q 004428 224 CFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSL 303 (754)
Q Consensus 224 ~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~L 303 (754)
..++...+|.+++|++.+++.+.+. |+.. |+|+|+++++.+++++|++++++|| +|||.+|+++++
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~lv~~pTG---------sGKT~~~~~~~l 73 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGY----GFEE-PSAIQQRAIMPIIEGHDVLAQAQSG---------TGKTGTFSIAAL 73 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHH----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SSHHHHHHHHHH
T ss_pred ccCcccCChhhcCCCHHHHHHHHHC----CCCC-CcHHHHHHHHHHhcCCCEEEECCCC---------CcHHHHHHHHHH
Confidence 4556678899999999999999875 7765 8999999999999999999999998 899999999999
Q ss_pred HHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccc
Q 004428 304 NHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFC 383 (754)
Q Consensus 304 NHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~ 383 (754)
+++... ...+++|||+|||+||.|+.+.+.+++.... .+..
T Consensus 74 ~~l~~~--------------------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-------~~~~ 114 (224)
T 1qde_A 74 QRIDTS--------------------------------VKAPQALMLAPTRELALQIQKVVMALAFHMD-------IKVH 114 (224)
T ss_dssp HHCCTT--------------------------------CCSCCEEEECSSHHHHHHHHHHHHHHTTTSC-------CCEE
T ss_pred HHHhcc--------------------------------CCCceEEEEECCHHHHHHHHHHHHHHhcccC-------ceEE
Confidence 988432 1357899999999999999999999875431 1222
Q ss_pred cccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHH
Q 004428 384 DEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLH 463 (754)
Q Consensus 384 ~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr 463 (754)
..+|+.. ... ..+. +..++|||+||++|.
T Consensus 115 ~~~g~~~-----------------------------------------------~~~-~~~~---~~~~~iiv~Tp~~l~ 143 (224)
T 1qde_A 115 ACIGGTS-----------------------------------------------FVE-DAEG---LRDAQIVVGTPGRVF 143 (224)
T ss_dssp EECC-------------------------------------------------------------CTTCSEEEECHHHHH
T ss_pred EEeCCcc-----------------------------------------------hHH-HHhc---CCCCCEEEECHHHHH
Confidence 2233221 000 1111 134899999999999
Q ss_pred HHHhhhhcccccCcccCCceeEEEEecchhhhhcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEE
Q 004428 464 QKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLL 542 (754)
Q Consensus 464 ~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllF 542 (754)
.++.. ....++.+.++||||||.|+..+| ..+..++.. +|.. +|+++|
T Consensus 144 ~~~~~-------~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~---~~~~---------------------~~~i~l 192 (224)
T 1qde_A 144 DNIQR-------RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL---LPPT---------------------TQVVLL 192 (224)
T ss_dssp HHHHT-------TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHH---SCTT---------------------CEEEEE
T ss_pred HHHHh-------CCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHh---CCcc---------------------CeEEEE
Confidence 98862 244589999999999999985444 345555544 3432 799999
Q ss_pred cCCCCHHHHHHHHHhhcCC
Q 004428 543 SYHPNPEINAFFNHHCANY 561 (754)
Q Consensus 543 SAt~~peinsL~~~~~~N~ 561 (754)
|||+++++..+++.++.|+
T Consensus 193 SAT~~~~~~~~~~~~~~~p 211 (224)
T 1qde_A 193 SATMPNDVLEVTTKFMRNP 211 (224)
T ss_dssp ESSCCHHHHHHHHHHCSSC
T ss_pred EeecCHHHHHHHHHHCCCC
Confidence 9999999999999999885
No 61
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.93 E-value=7.4e-25 Score=214.32 Aligned_cols=198 Identities=20% Similarity=0.307 Sum_probs=154.1
Q ss_pred CcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcC
Q 004428 231 LYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTR 310 (754)
Q Consensus 231 ~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr 310 (754)
+|.+++|++.+++.+.+. |+.. |+|+|+++++.+++++|++.+++|| +|||.+|++++++++...+
T Consensus 2 ~f~~~~l~~~l~~~l~~~----~~~~-~~~~Q~~~i~~~~~~~~~li~~~TG---------sGKT~~~~~~~~~~l~~~~ 67 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGR----GLTT-PTPIQAAALPLALEGKDLIGQARTG---------TGKTLAFALPIAERLAPSQ 67 (207)
T ss_dssp CGGGSCCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SCHHHHHHHHHHHHCCCCC
T ss_pred ChhhcCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHcCCCCEEEECCCC---------ChHHHHHHHHHHHHHhhcc
Confidence 589999999999999874 7765 8999999999999999999999998 8999999999999986431
Q ss_pred CccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCc
Q 004428 311 DLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKK 390 (754)
Q Consensus 311 ~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~ 390 (754)
. + -..|++|||+|||+||.|+.+.+.++.+.. +....+|+.
T Consensus 68 ~--------------------------~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~---------~~~~~~~~~- 108 (207)
T 2gxq_A 68 E--------------------------R---GRKPRALVLTPTRELALQVASELTAVAPHL---------KVVAVYGGT- 108 (207)
T ss_dssp C--------------------------T---TCCCSEEEECSSHHHHHHHHHHHHHHCTTS---------CEEEECSSS-
T ss_pred c--------------------------c---CCCCcEEEEECCHHHHHHHHHHHHHHhhcc---------eEEEEECCC-
Confidence 1 0 125899999999999999999999986532 122233322
Q ss_pred cccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhh
Q 004428 391 EEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAE 470 (754)
Q Consensus 391 ~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e 470 (754)
......-.+. .+++|+|+||++|..++..
T Consensus 109 ----------------------------------------------~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~-- 137 (207)
T 2gxq_A 109 ----------------------------------------------GYGKQKEALL---RGADAVVATPGRALDYLRQ-- 137 (207)
T ss_dssp ----------------------------------------------CSHHHHHHHH---HCCSEEEECHHHHHHHHHH--
T ss_pred ----------------------------------------------ChHHHHHHhh---CCCCEEEECHHHHHHHHHc--
Confidence 1111111122 3689999999999998863
Q ss_pred cccccCcccCCceeEEEEecchhhhhcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHH
Q 004428 471 ENKEQDVDYLSSIEVLIIDHADIILMQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE 549 (754)
Q Consensus 471 ~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pe 549 (754)
....++.+.++||||||.|+..+| ..+..++.. +|.. +|+++||||+++.
T Consensus 138 -----~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~---~~~~---------------------~~~i~~SAT~~~~ 188 (207)
T 2gxq_A 138 -----GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSA---TPPS---------------------RQTLLFSATLPSW 188 (207)
T ss_dssp -----TSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHT---SCTT---------------------SEEEEECSSCCHH
T ss_pred -----CCcchhhceEEEEEChhHhhccchHHHHHHHHHh---CCcc---------------------CeEEEEEEecCHH
Confidence 234589999999999999985444 455555543 4432 8999999999999
Q ss_pred HHHHHHHhhcCC
Q 004428 550 INAFFNHHCANY 561 (754)
Q Consensus 550 insL~~~~~~N~ 561 (754)
+..+++.++.|+
T Consensus 189 ~~~~~~~~~~~p 200 (207)
T 2gxq_A 189 AKRLAERYMKNP 200 (207)
T ss_dssp HHHHHHHHCSSC
T ss_pred HHHHHHHHcCCC
Confidence 999999999885
No 62
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.93 E-value=2.2e-25 Score=245.65 Aligned_cols=295 Identities=11% Similarity=0.041 Sum_probs=198.0
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|+|.|+++++.++++.+++.++.|| +|||.+|+++++..
T Consensus 94 l~~~Q~~ai~~i~~~~~~ll~~~TG---------sGKT~~~l~~i~~~-------------------------------- 132 (472)
T 2fwr_A 94 LRDYQEKALERWLVDKRGCIVLPTG---------SGKTHVAMAAINEL-------------------------------- 132 (472)
T ss_dssp BCHHHHHHHHHHTTTTEEEEECCTT---------SCHHHHHHHHHHHH--------------------------------
T ss_pred cCHHHHHHHHHHHhcCCEEEEeCCC---------CCHHHHHHHHHHHc--------------------------------
Confidence 7999999999999999999999998 89999999987642
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
..++|||||||+||.|+.+.+.++ +.. +. ..
T Consensus 133 ------~~~~Lvl~P~~~L~~Q~~~~~~~~-~~~---------~v-~~-------------------------------- 163 (472)
T 2fwr_A 133 ------STPTLIVVPTLALAEQWKERLGIF-GEE---------YV-GE-------------------------------- 163 (472)
T ss_dssp ------CSCEEEEESSHHHHHHHHHHGGGG-CGG---------GE-EE--------------------------------
T ss_pred ------CCCEEEEECCHHHHHHHHHHHHhC-CCc---------ce-EE--------------------------------
Confidence 136899999999999999998885 110 01 11
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
+.|... ..++|+|+||..|...+.. +...+.++||||||.+...
T Consensus 164 ------~~g~~~--------------------~~~~Ivv~T~~~l~~~~~~----------~~~~~~liIvDEaH~~~~~ 207 (472)
T 2fwr_A 164 ------FSGRIK--------------------ELKPLTVSTYDSAYVNAEK----------LGNRFMLLIFDEVHHLPAE 207 (472)
T ss_dssp ------BSSSCB--------------------CCCSEEEEEHHHHHHTHHH----------HTTTCSEEEEETGGGTTST
T ss_pred ------ECCCcC--------------------CcCCEEEEEcHHHHHHHHH----------hcCCCCEEEEECCcCCCCh
Confidence 222110 1379999999999876541 2245899999999999855
Q ss_pred CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH-------------------HHHHHHHHhh
Q 004428 498 NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP-------------------EINAFFNHHC 558 (754)
Q Consensus 498 Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p-------------------einsL~~~~~ 558 (754)
.|.. +++.+ +. ++.|++|||... .+..+...++
T Consensus 208 ~~~~---~~~~~---~~----------------------~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l 259 (472)
T 2fwr_A 208 SYVQ---IAQMS---IA----------------------PFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHL 259 (472)
T ss_dssp TTHH---HHHTC---CC----------------------SEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCC
T ss_pred HHHH---HHHhc---CC----------------------CeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcC
Confidence 4543 33322 22 578999999972 1222211111
Q ss_pred cCCCc-eEEEeec------ccCcccc-------------cccceeEEEEEec-cCcc-------------cchhHHHHHH
Q 004428 559 ANYQG-KVKLACE------YKGVLPK-------------VLLNVRQIYERFN-ADSI-------------AKADDARLEY 604 (754)
Q Consensus 559 ~N~~G-~Vkv~~~------~~g~i~~-------------v~~~I~Q~f~r~~-~~s~-------------~~~~d~Rf~y 604 (754)
.++.- .+.+... +...... ....+.+.+.... .... ......++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 339 (472)
T 2fwr_A 260 AKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRK 339 (472)
T ss_dssp CSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHH
T ss_pred CCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHH
Confidence 11100 0001000 0000000 0000000000000 0000 0001122221
Q ss_pred HHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCcc
Q 004428 605 FTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRY 684 (754)
Q Consensus 605 F~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~ 684 (754)
+...+......++||||++......|..+|. +..+|+.+++.+|.+++..|++|+++|||+|+.+. +|+
T Consensus 340 ----l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~--~Gl 408 (472)
T 2fwr_A 340 ----LREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLD--EGI 408 (472)
T ss_dssp ----HHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCC--SSS
T ss_pred ----HHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchh--cCc
Confidence 2122233456899999999999999999884 56799999999999999999999999999999999 999
Q ss_pred ccCCCCeEEEccCCCCCCchhhhccccCCCCCc
Q 004428 685 KIRGIQNLIIYSLPERKEFYPEIVNMLEGSHNM 717 (754)
Q Consensus 685 dIkgV~~VIfY~lP~~pefY~erigrt~ra~~g 717 (754)
||+++++||+|++|.++..|.+++||++|.+.+
T Consensus 409 dlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~ 441 (472)
T 2fwr_A 409 DVPDANVGVIMSGSGSAREYIQRLGRILRPSKG 441 (472)
T ss_dssp CSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTT
T ss_pred ccccCcEEEEECCCCCHHHHHHHHhhccCCCCC
Confidence 999999999999999999999999999998755
No 63
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.93 E-value=1e-24 Score=275.36 Aligned_cols=349 Identities=12% Similarity=0.127 Sum_probs=236.4
Q ss_pred CCCCCCCHHHHHHhhhhh-CCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 253 GGNDFHSSKQRSFFSLCN-SYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 253 g~~~~pTpiQ~~~ip~i~-~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
|+.. ++|+|.++||.++ +.++|++||+|| +|||.++.|+||+.|.+.+..-
T Consensus 76 g~~~-ln~iQs~~~~~al~~~~N~lv~APTG---------sGKTlva~l~il~~l~~~~~~~------------------ 127 (1724)
T 4f92_B 76 GFKT-LNRIQSKLYRAALETDENLLLCAPTG---------AGKTNVALMCMLREIGKHINMD------------------ 127 (1724)
T ss_dssp TCSB-CCHHHHHTHHHHHTCCCCEEEECCTT---------SCCHHHHHHHHHHHHGGGCCTT------------------
T ss_pred CCCC-CCHHHHHHHHHHHcCCCcEEEEeCCc---------chHHHHHHHHHHHHHHhhcccc------------------
Confidence 5665 6899999999876 588999999998 8999999999999998764310
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
.... -.+.|||+++|||+||.|++..+.+.....+ + +....+|+.
T Consensus 128 ---~~~~---~~~~k~lyiaP~kALa~e~~~~l~~~~~~~g-i------~V~~~tGd~---------------------- 172 (1724)
T 4f92_B 128 ---GTIN---VDDFKIIYIAPMRSLVQEMVGSFGKRLATYG-I------TVAELTGDH---------------------- 172 (1724)
T ss_dssp ---SSCC---TTSCEEEEECSSHHHHHHHHHHHHHHHTTTT-C------CEEECCSSC----------------------
T ss_pred ---cccc---CCCCEEEEECCHHHHHHHHHHHHHHHHhhCC-C------EEEEEECCC----------------------
Confidence 0000 1246899999999999999999987543321 1 122222321
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
..+++.+ ..+||||+||.+|..++.. ..+..+|+.|.++||||+
T Consensus 173 -------------------------~~~~~~~------~~~~IlVtTpEkld~llr~-----~~~~~~l~~v~~vIiDEv 216 (1724)
T 4f92_B 173 -------------------------QLCKEEI------SATQIIVCTPEKWDIITRK-----GGERTYTQLVRLIILDEI 216 (1724)
T ss_dssp -------------------------SSCCTTG------GGCSEEEECHHHHHHHTTS-----STTHHHHTTEEEEEETTG
T ss_pred -------------------------CCCcccc------CCCCEEEECHHHHHHHHcC-----CccchhhcCcCEEEEecc
Confidence 1111111 2589999999999766642 123346899999999999
Q ss_pred hhhhhcCch-HHHHHHHHh----ccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhc-CCCceE
Q 004428 492 DIILMQNWS-WLIEVVEQL----NRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCA-NYQGKV 565 (754)
Q Consensus 492 D~mLmQNw~-hv~~Il~~L----n~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~-N~~G~V 565 (754)
|.+-. .-. +++.++..+ ...+. ..|.|++|||++. +..++ +++. +....+
T Consensus 217 H~l~d-~RG~~lE~~l~rl~~~~~~~~~---------------------~~riI~LSATl~N-~~dvA-~wL~~~~~~~~ 272 (1724)
T 4f92_B 217 HLLHD-DRGPVLEALVARAIRNIEMTQE---------------------DVRLIGLSATLPN-YEDVA-TFLRVDPAKGL 272 (1724)
T ss_dssp GGGGS-TTHHHHHHHHHHHHHHHHHHTC---------------------CCEEEEEECSCTT-HHHHH-HHTTCCHHHHE
T ss_pred hhcCC-ccHHHHHHHHHHHHHHHHhCCC---------------------CCcEEEEecccCC-HHHHH-HHhCCCCCCCe
Confidence 85433 222 334343322 11222 2689999999973 34444 3332 211112
Q ss_pred EE-eecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecchhcHHHHHHHHHhC--
Q 004428 566 KL-ACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSSYFEFVRLRNFLKSQ-- 641 (754)
Q Consensus 566 kv-~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~Sy~d~vrlrn~Lk~~-- 641 (754)
.+ ...+ -..+++|.|.-+.... ...+++..-..+...+.. ...+++||||+|+.++.+++.+|.+.
T Consensus 273 ~~~~~~~------RPvpL~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~ 342 (1724)
T 4f92_B 273 FYFDNSF------RPVPLEQTYVGITEKK----AIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCL 342 (1724)
T ss_dssp EECCGGG------CSSCEEEECCEECCCC----HHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHH
T ss_pred EEECCCC------ccCccEEEEeccCCcc----hhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHh
Confidence 21 1111 1235777777665432 234444333333333433 24568999999999999998888541
Q ss_pred -----------------------------------CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCcccc
Q 004428 642 -----------------------------------NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKI 686 (754)
Q Consensus 642 -----------------------------------~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dI 686 (754)
..-++.-|+.+++.+|...-..|++|.++|||||..++ +|+++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa--~GVNl 420 (1724)
T 4f92_B 343 EKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLA--WGVNL 420 (1724)
T ss_dssp HTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHH--HHSCC
T ss_pred hccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhH--hhCCC
Confidence 11256779999999999999999999999999999999 99999
Q ss_pred CCCCeEEE----ccC------CCCCCchhhhccccCCCC---CceEEEEechhcHHHHHHHhC
Q 004428 687 RGIQNLII----YSL------PERKEFYPEIVNMLEGSH---NMTCTVLFSRFDMLRLERIVG 736 (754)
Q Consensus 687 kgV~~VIf----Y~l------P~~pefY~erigrt~ra~---~g~~~~L~sk~D~~~LErIVG 736 (754)
+.+..||. |++ |-.+..|.+|+||+||++ .|.|+.+.++.|......++.
T Consensus 421 Pa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~ 483 (1724)
T 4f92_B 421 PAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLN 483 (1724)
T ss_dssp CBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTT
T ss_pred CCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHc
Confidence 99888874 554 557888999999999987 588888888777655544443
No 64
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.93 E-value=5.4e-25 Score=226.88 Aligned_cols=204 Identities=21% Similarity=0.235 Sum_probs=152.1
Q ss_pred CCcCCCC--CCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHh
Q 004428 230 NLYSDYG--LKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIF 307 (754)
Q Consensus 230 ~~f~~l~--L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ 307 (754)
.+|.+++ |++.+++++.+. |+.. |+|+|.+++|.++.++|++++++|| +|||.+|++|+|+++.
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~lv~a~TG---------sGKT~~~~l~~l~~l~ 117 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEM----GFTN-MTEIQHKSIRPLLEGRDLLAAAKTG---------SGKTLAFLIPAVELIV 117 (262)
T ss_dssp GCC-----CCCHHHHHHHHHT----TCCB-CCHHHHHHHHHHHHTCCCEECCCTT---------SCHHHHHHHHHHHHHH
T ss_pred CChhHhccccCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCcEEEEccCC---------CCchHHHHHHHHHHHH
Confidence 4577777 999999999875 8876 8999999999999999999999998 8999999999999998
Q ss_pred hcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccC
Q 004428 308 RTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFG 387 (754)
Q Consensus 308 ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg 387 (754)
+.+.. . ...+++|||+|||+||.|+++.+.++..... .+....+|
T Consensus 118 ~~~~~-------------------------~---~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~-------~~~~~~~g 162 (262)
T 3ly5_A 118 KLRFM-------------------------P---RNGTGVLILSPTRELAMQTFGVLKELMTHHV-------HTYGLIMG 162 (262)
T ss_dssp HTTCC-------------------------G---GGCCCEEEECSSHHHHHHHHHHHHHHTTTCC-------SCEEEECS
T ss_pred hcccc-------------------------c---cCCceEEEEeCCHHHHHHHHHHHHHHHhhcC-------ceEEEEEC
Confidence 65320 0 0246899999999999999999999875432 11112222
Q ss_pred CCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHh
Q 004428 388 TKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMT 467 (754)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~ 467 (754)
+. .......++. .+++|||+||++|..++.
T Consensus 163 ~~-----------------------------------------------~~~~~~~~~~---~~~~Iiv~Tp~~l~~~~~ 192 (262)
T 3ly5_A 163 GS-----------------------------------------------NRSAEAQKLG---NGINIIVATPGRLLDHMQ 192 (262)
T ss_dssp SS-----------------------------------------------CHHHHHHHHH---HCCSEEEECHHHHHHHHH
T ss_pred CC-----------------------------------------------CHHHHHHHhc---CCCCEEEEcHHHHHHHHH
Confidence 21 1111122222 358999999999999886
Q ss_pred hhhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCC
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHP 546 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~ 546 (754)
. .....++.+.++||||||+|+. ++...+..|+..+ |.. +|+|+||||+
T Consensus 193 ~------~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~---~~~---------------------~q~l~~SAT~ 242 (262)
T 3ly5_A 193 N------TPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL---PTR---------------------RQTMLFSATQ 242 (262)
T ss_dssp H------CTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHS---CSS---------------------SEEEEECSSC
T ss_pred c------cCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhC---CCC---------------------CeEEEEEecC
Confidence 3 1223588999999999999984 4445666666554 443 8999999999
Q ss_pred CHHHHHHHHHhhcCCC
Q 004428 547 NPEINAFFNHHCANYQ 562 (754)
Q Consensus 547 ~peinsL~~~~~~N~~ 562 (754)
++++..+++.++++.+
T Consensus 243 ~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 243 TRKVEDLARISLKKEP 258 (262)
T ss_dssp CHHHHHHHHHHCSSCC
T ss_pred CHHHHHHHHHHcCCCC
Confidence 9999999998887653
No 65
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.93 E-value=2.4e-25 Score=245.84 Aligned_cols=270 Identities=10% Similarity=0.068 Sum_probs=183.2
Q ss_pred CCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEE
Q 004428 271 SYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLIL 350 (754)
Q Consensus 271 ~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL 350 (754)
.++|++.+++|| +|||.+|++++|+++++. .++||||
T Consensus 1 kg~~~lv~a~TG---------sGKT~~~l~~~l~~~~~~----------------------------------g~~~lvl 37 (431)
T 2v6i_A 1 KRELTVLDLHPG---------AGKTRRVLPQLVREAVKK----------------------------------RLRTVIL 37 (431)
T ss_dssp -CCEEEEECCTT---------SCTTTTHHHHHHHHHHHT----------------------------------TCCEEEE
T ss_pred CCCEEEEEcCCC---------CCHHHHHHHHHHHHHHhC----------------------------------CCCEEEE
Confidence 378999999998 899999999999988632 2689999
Q ss_pred ccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCC
Q 004428 351 LPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDD 430 (754)
Q Consensus 351 ~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD 430 (754)
+|||+||.|+.+.+..+ .+. + .+ |.
T Consensus 38 ~Pt~~La~Q~~~~~~~~-------~v~----~---~~--------------------------------------~~--- 62 (431)
T 2v6i_A 38 APTRVVASEMYEALRGE-------PIR----Y---MT--------------------------------------PA--- 62 (431)
T ss_dssp ESSHHHHHHHHHHTTTS-------CEE----E---C--------------------------------------------
T ss_pred CcHHHHHHHHHHHhCCC-------eEE----E---Ee--------------------------------------cC---
Confidence 99999999998766411 010 0 01 10
Q ss_pred cccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhc
Q 004428 431 NFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLN 510 (754)
Q Consensus 431 ~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln 510 (754)
+ .. .-+ .+.-+.+.|.+.|...+-. ...|+.+.++||||||++-+..+..+..+....
T Consensus 63 -----~--~~----~~~--~~~~~~~~~~~~l~~~l~~--------~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~- 120 (431)
T 2v6i_A 63 -----V--QS----ERT--GNEIVDFMCHSTFTMKLLQ--------GVRVPNYNLYIMDEAHFLDPASVAARGYIETRV- 120 (431)
T ss_dssp -------------------CCCSEEEEEHHHHHHHHHH--------TCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-
T ss_pred -----c--cc----cCC--CCceEEEEchHHHHHHHhc--------CccccCCCEEEEeCCccCCccHHHHHHHHHHHh-
Confidence 0 00 000 1234556677766544431 124889999999999998443233333333222
Q ss_pred cCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEec
Q 004428 511 RIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFN 590 (754)
Q Consensus 511 ~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~ 590 (754)
..+ .+|+|+||||+++.+..+... +.+ .+.+. ..++
T Consensus 121 ~~~----------------------~~~~l~~SAT~~~~~~~~~~~---~~~-i~~~~------------------~~~~ 156 (431)
T 2v6i_A 121 SMG----------------------DAGAIFMTATPPGTTEAFPPS---NSP-IIDEE------------------TRIP 156 (431)
T ss_dssp HTT----------------------SCEEEEEESSCTTCCCSSCCC---SSC-CEEEE------------------CCCC
T ss_pred hCC----------------------CCcEEEEeCCCCcchhhhcCC---CCc-eeecc------------------ccCC
Confidence 111 389999999999854322110 110 01110 0111
Q ss_pred cCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCcc
Q 004428 591 ADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRK 670 (754)
Q Consensus 591 ~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ 670 (754)
.... . .++..+.. ..+++|||||+..+...+...|++.++.+..+|+. +|.+++..|++|+.+
T Consensus 157 ~~~~--------~----~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~ 219 (431)
T 2v6i_A 157 DKAW--------N----SGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD 219 (431)
T ss_dssp SSCC--------S----SCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS
T ss_pred HHHH--------H----HHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe
Confidence 1110 0 12222322 35789999999999999999999999999999985 577899999999999
Q ss_pred EEEEcccccccCccccCCCCe-----------------EEEccCCCCCCchhhhccccCCCC-CceEEEEec
Q 004428 671 MILYTERSHFYHRYKIRGIQN-----------------LIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFS 724 (754)
Q Consensus 671 ILL~TErahffRr~dIkgV~~-----------------VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~s 724 (754)
|||+|+++. +|+||+ +.+ ||+|+.|.++..|.||+||+||.+ .+.|..+|.
T Consensus 220 vLVaT~v~e--~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 220 FVITTDISE--MGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEECGGGG--TSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred EEEECchHH--cCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 999999999 999998 877 578899999999999999999987 333444443
No 66
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.93 E-value=4.5e-25 Score=257.15 Aligned_cols=288 Identities=13% Similarity=0.060 Sum_probs=196.2
Q ss_pred HHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccccc
Q 004428 260 SKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLD 339 (754)
Q Consensus 260 piQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RD 339 (754)
|.|..-....++++||+++++|| +|||. ++|.++.+.
T Consensus 143 p~~~~p~ar~l~rk~vlv~apTG---------SGKT~----~al~~l~~~------------------------------ 179 (677)
T 3rc3_A 143 PPNWYPDARAMQRKIIFHSGPTN---------SGKTY----HAIQKYFSA------------------------------ 179 (677)
T ss_dssp GGGGCHHHHTSCCEEEEEECCTT---------SSHHH----HHHHHHHHS------------------------------
T ss_pred hhhhCHHHHhcCCCEEEEEcCCC---------CCHHH----HHHHHHHhc------------------------------
Confidence 33433334457899999999998 89997 666666532
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCC
Q 004428 340 RGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSD 419 (754)
Q Consensus 340 QGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D 419 (754)
+++||++|||+||.|+.+.+.++... + ....|
T Consensus 180 -----~~gl~l~PtR~LA~Qi~~~l~~~g~~-----v------~lltG-------------------------------- 211 (677)
T 3rc3_A 180 -----KSGVYCGPLKLLAHEIFEKSNAAGVP-----C------DLVTG-------------------------------- 211 (677)
T ss_dssp -----SSEEEEESSHHHHHHHHHHHHHTTCC-----E------EEECS--------------------------------
T ss_pred -----CCeEEEeCHHHHHHHHHHHHHhcCCc-----E------EEEEC--------------------------------
Confidence 23599999999999999998876211 1 01111
Q ss_pred ceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCc
Q 004428 420 YQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNW 499 (754)
Q Consensus 420 ~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw 499 (754)
+.+++|+||||+.+++-.+- ...+.+..+.++||||||.|+...|
T Consensus 212 -------------------------------~~~~iv~TpGr~~~il~~T~----e~~~l~~~v~lvVIDEaH~l~d~~~ 256 (677)
T 3rc3_A 212 -------------------------------EERVTVQPNGKQASHVSCTV----EMCSVTTPYEVAVIDEIQMIRDPAR 256 (677)
T ss_dssp -------------------------------SCEECCSTTCCCCSEEEEEG----GGCCSSSCEEEEEECSGGGGGCTTT
T ss_pred -------------------------------CeeEEecCCCcccceeEecH----hHhhhcccCCEEEEecceecCCccc
Confidence 12234455555444442110 1133578899999999999984434
Q ss_pred h-HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCccccc
Q 004428 500 S-WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKV 578 (754)
Q Consensus 500 ~-hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v 578 (754)
. .+..++..+ |. ..+|++++|||. +.+..++.... ..+.+.....
T Consensus 257 g~~~~~~l~~l---~~--------------------~~i~il~~SAT~-~~i~~l~~~~~----~~~~v~~~~r------ 302 (677)
T 3rc3_A 257 GWAWTRALLGL---CA--------------------EEVHLCGEPAAI-DLVMELMYTTG----EEVEVRDYKR------ 302 (677)
T ss_dssp HHHHHHHHHHC---CE--------------------EEEEEEECGGGH-HHHHHHHHHHT----CCEEEEECCC------
T ss_pred hHHHHHHHHcc---Cc--------------------cceEEEeccchH-HHHHHHHHhcC----CceEEEEeee------
Confidence 3 445555443 31 138999999994 55666654431 1233321100
Q ss_pred ccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHH
Q 004428 579 LLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDIS 658 (754)
Q Consensus 579 ~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~ 658 (754)
...+. +... .+..+. ....+.+|||+|..+..++...|.+.++.++.+|+.+++.+|.
T Consensus 303 ~~~l~-----~~~~----------------~l~~l~-~~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~ 360 (677)
T 3rc3_A 303 LTPIS-----VLDH----------------ALESLD-NLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKL 360 (677)
T ss_dssp SSCEE-----ECSS----------------CCCSGG-GCCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHH
T ss_pred cchHH-----HHHH----------------HHHHHH-hcCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHH
Confidence 00010 0000 000111 1246779999999999999999999999999999999999999
Q ss_pred HHHHHHhc--CCccEEEEcccccccCccccCCCCeEEEccC--------------CCCCCchhhhccccCCCCC----ce
Q 004428 659 RARVWFFE--GKRKMILYTERSHFYHRYKIRGIQNLIIYSL--------------PERKEFYPEIVNMLEGSHN----MT 718 (754)
Q Consensus 659 rar~~F~~--G~~~ILL~TErahffRr~dIkgV~~VIfY~l--------------P~~pefY~erigrt~ra~~----g~ 718 (754)
+....|++ |+++|||||+.+. +|+|| +|++||+|++ |.++..|.||+||+||.+. |.
T Consensus 361 ~~~~~F~~~~g~~~VLVATdi~e--~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~ 437 (677)
T 3rc3_A 361 AQAKKFNDPNDPCKILVATDAIG--MGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGE 437 (677)
T ss_dssp HHHHHHHCTTSSCCEEEECGGGG--SSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEE
T ss_pred HHHHHHHccCCCeEEEEeCcHHH--CCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEE
Confidence 99999999 9999999999999 99999 9999999999 7788999999999999872 55
Q ss_pred EEEEechhcHHHHHH
Q 004428 719 CTVLFSRFDMLRLER 733 (754)
Q Consensus 719 ~~~L~sk~D~~~LEr 733 (754)
|+.+ +..|...+.+
T Consensus 438 v~~l-~~~d~~~~~~ 451 (677)
T 3rc3_A 438 VTTM-NHEDLSLLKE 451 (677)
T ss_dssp EEES-STTHHHHHHH
T ss_pred EEEE-ecchHHHHHH
Confidence 5544 4445444443
No 67
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=4.3e-24 Score=211.92 Aligned_cols=201 Identities=17% Similarity=0.227 Sum_probs=152.3
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
..+|++++|++.|++++.+. |+.. |+|+|+++++.+++++|++.+++|| +|||.+|++++++++.+
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~li~~~TG---------sGKT~~~~~~~~~~~~~ 78 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDC----GFEH-PSEVQHECIPQAILGMDVLCQAKSG---------MGKTAVFVLATLQQLEP 78 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHT----TCCC-CCHHHHHHHHHHHTTCCEEEECCTT---------SCHHHHHHHHHHHHCCC
T ss_pred CCCHhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------CchhhhhhHHHHHhhhc
Confidence 46799999999999999874 7765 8999999999999999999999998 89999999999998742
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
. ...+++|||+|||+||.|+.+.+.++...... .+....+|+
T Consensus 79 ~--------------------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~------~~v~~~~g~ 120 (220)
T 1t6n_A 79 V--------------------------------TGQVSVLVMCHTRELAFQISKEYERFSKYMPN------VKVAVFFGG 120 (220)
T ss_dssp C--------------------------------TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT------CCEEEESCC
T ss_pred c--------------------------------CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC------ceEEEEeCC
Confidence 1 12478999999999999999999988643210 111112222
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
. ......-.+.. ..++|||+||++|..++..
T Consensus 121 ~-----------------------------------------------~~~~~~~~~~~--~~~~i~v~T~~~l~~~~~~ 151 (220)
T 1t6n_A 121 L-----------------------------------------------SIKKDEEVLKK--NCPHIVVGTPGRILALARN 151 (220)
T ss_dssp S-----------------------------------------------CHHHHHHHHHH--SCCSEEEECHHHHHHHHHT
T ss_pred C-----------------------------------------------ChHHHHHHHhc--CCCCEEEeCHHHHHHHHHh
Confidence 1 11111111211 3579999999999998862
Q ss_pred hhcccccCcccCCceeEEEEecchhhhh--cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILM--QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHP 546 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLm--QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~ 546 (754)
....++.+.++||||||.|+. ++|..+..++. .+|.. +|+|+||||+
T Consensus 152 -------~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~---~~~~~---------------------~~~i~~SAT~ 200 (220)
T 1t6n_A 152 -------KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFR---MTPHE---------------------KQVMMFSATL 200 (220)
T ss_dssp -------TSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHH---TSCSS---------------------SEEEEEESCC
T ss_pred -------CCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHH---hCCCc---------------------CeEEEEEeec
Confidence 334589999999999999984 33444444443 34432 8999999999
Q ss_pred CHHHHHHHHHhhcCC
Q 004428 547 NPEINAFFNHHCANY 561 (754)
Q Consensus 547 ~peinsL~~~~~~N~ 561 (754)
++++..+++.++.|+
T Consensus 201 ~~~~~~~~~~~~~~p 215 (220)
T 1t6n_A 201 SKEIRPVCRKFMQDP 215 (220)
T ss_dssp CTTTHHHHHTTCSSC
T ss_pred CHHHHHHHHHHcCCC
Confidence 999999999999885
No 68
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.88 E-value=5.1e-22 Score=240.64 Aligned_cols=321 Identities=11% Similarity=0.052 Sum_probs=208.9
Q ss_pred CCCHHHHHHhhhhhC--------------CccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhh
Q 004428 257 FHSSKQRSFFSLCNS--------------YRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAK 322 (754)
Q Consensus 257 ~pTpiQ~~~ip~i~~--------------y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~ 322 (754)
.|+|.|..+++.++. +++.++.+.|| +|||.++ ++++ +++..
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TG---------SGKT~t~-~~l~-~ll~~------------- 326 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTG---------SGKTLTS-FKAA-RLATE------------- 326 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTT---------SSHHHHH-HHHH-HHHTT-------------
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCC---------CCHHHHH-HHHH-HHHHh-------------
Confidence 389999999999875 37899999998 8999996 7777 44321
Q ss_pred hccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhh
Q 004428 323 NKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQ 402 (754)
Q Consensus 323 ~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~ 402 (754)
.+ ..++||||||+|+|+.|+.+.+.++++.. + .|+..
T Consensus 327 -----------------~~-~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~----v---------~~~~s------------ 363 (1038)
T 2w00_A 327 -----------------LD-FIDKVFFVVDRKDLDYQTMKEYQRFSPDS----V---------NGSEN------------ 363 (1038)
T ss_dssp -----------------CT-TCCEEEEEECGGGCCHHHHHHHHTTSTTC----S---------SSSCC------------
T ss_pred -----------------cC-CCceEEEEeCcHHHHHHHHHHHHHhcccc----c---------ccccC------------
Confidence 00 12589999999999999999998876421 1 11110
Q ss_pred cccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCc
Q 004428 403 NIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSS 482 (754)
Q Consensus 403 ~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSS 482 (754)
..-.++.++ . .+++||||||.+|..++... .....++.
T Consensus 364 ---------------------------------~~~l~~~L~--~--~~~~IiVtTiqkl~~~l~~~-----~~~~~~~~ 401 (1038)
T 2w00_A 364 ---------------------------------TAGLKRNLD--K--DDNKIIVTTIQKLNNLMKAE-----SDLPVYNQ 401 (1038)
T ss_dssp ---------------------------------CHHHHHHHH--C--SSCCEEEEEHHHHHHHHHHC-----CCCGGGGS
T ss_pred ---------------------------------HHHHHHHhc--C--CCCCEEEEEHHHHHHHHhcc-----cchhcccc
Confidence 001122222 1 36899999999999988621 11223667
Q ss_pred eeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHH--------HHHHH
Q 004428 483 IEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE--------INAFF 554 (754)
Q Consensus 483 IEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pe--------insL~ 554 (754)
..++|+||||++..+. ....|++.+ |. +|.|.||||.... ...+|
T Consensus 402 ~~lvIiDEAHrs~~~~--~~~~I~~~~---p~----------------------a~~lgfTATP~~~~~~~~~~~t~~~F 454 (1038)
T 2w00_A 402 QVVFIFDECHRSQFGE--AQKNLKKKF---KR----------------------YYQFGFTGTPIFPENALGSETTASVF 454 (1038)
T ss_dssp CEEEEEESCCTTHHHH--HHHHHHHHC---SS----------------------EEEEEEESSCCCSTTCTTSCCHHHHH
T ss_pred ccEEEEEccchhcchH--HHHHHHHhC---Cc----------------------ccEEEEeCCccccccchhhhHHHHHh
Confidence 8999999999987422 233444443 42 7999999999753 33344
Q ss_pred HHhhcCCCceEEEee-cccCcccccccceeEEEEEecc---------C----------cccchhHHHHHHHHHHHhHHhh
Q 004428 555 NHHCANYQGKVKLAC-EYKGVLPKVLLNVRQIYERFNA---------D----------SIAKADDARLEYFTKKVFPKIK 614 (754)
Q Consensus 555 ~~~~~N~~G~Vkv~~-~~~g~i~~v~~~I~Q~f~r~~~---------~----------s~~~~~d~Rf~yF~~~iLp~l~ 614 (754)
...+..|. +.. ...|.+ .++...|..+.. . ... ..+.|....+..|+..+.
T Consensus 455 G~~i~~Y~----l~~AI~dg~l----~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l-~~~~ri~~I~~~Il~~~~ 525 (1038)
T 2w00_A 455 GRELHSYV----ITDAIRDEKV----LKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAF-LHPMRIQEITQYILNNFR 525 (1038)
T ss_dssp CSEEEEEC----HHHHHHHTSS----CCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTT-TCHHHHHHHHHHHHHHHH
T ss_pred CCeeEeec----HHHHHhCCCc----CCeEEEEEeccchhhhccccccHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence 22111110 000 001211 112211111100 0 000 123344433444444432
Q ss_pred hc--------CCCcEEEEecchhcHHHHHHHHHhCC------------Cce-EeecCC----------C----------C
Q 004428 615 DS--------IQGGIMLFLSSYFEFVRLRNFLKSQN------------ASF-CLLGDY----------T----------E 653 (754)
Q Consensus 615 ~~--------~~~~tLIFv~Sy~d~vrlrn~Lk~~~------------~~f-~~Ihey----------~----------s 653 (754)
.. ...++||||+|...+.++...|++.+ +.+ +.+|+. + +
T Consensus 526 ~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~ 605 (1038)
T 2w00_A 526 QKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMD 605 (1038)
T ss_dssp HHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSC
T ss_pred HhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccc
Confidence 21 23579999999999999999998654 555 455542 1 2
Q ss_pred H-----------------------------HHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCch
Q 004428 654 P-----------------------------SDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFY 704 (754)
Q Consensus 654 q-----------------------------~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY 704 (754)
+ ..|..+...|++|+++|||+||++. +|+|++.+ +|++++.|...+.|
T Consensus 606 ~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~ll--tGfDiP~l-~tlylDkpl~~~~l 682 (1038)
T 2w00_A 606 SSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFL--TGFDAPTL-NTLFVDKNLRYHGL 682 (1038)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTS--SSCCCTTE-EEEEEESCCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHH--hCcCcccc-cEEEEccCCCccce
Confidence 2 2477888999999999999999999 99999999 89999999999999
Q ss_pred hhhccccCCCCC-----ceEEEEech
Q 004428 705 PEIVNMLEGSHN-----MTCTVLFSR 725 (754)
Q Consensus 705 ~erigrt~ra~~-----g~~~~L~sk 725 (754)
+|++||++|... |.++.++..
T Consensus 683 iQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 683 MQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp HHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred eehhhccCcCCCCCCCcEEEEEcccc
Confidence 999999999752 566666553
No 69
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.88 E-value=3.4e-20 Score=215.25 Aligned_cols=123 Identities=16% Similarity=0.056 Sum_probs=107.2
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC--------C
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR--------G 688 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk--------g 688 (754)
...++||||+|......|.+.|++.|++...||+. |.+|.+++-.+.-+...|||||++|+ ||+||+ |
T Consensus 473 ~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgk--q~~rE~~ii~~ag~~g~VtVATdmAg--RGtDI~lg~~V~~~G 548 (822)
T 3jux_A 473 KGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAK--YHEKEAEIVAKAGQKGMVTIATNMAG--RGTDIKLGPGVAELG 548 (822)
T ss_dssp HTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSC--HHHHHHHHHHHHHSTTCEEEEETTTT--TTCCCCCCTTTTTTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCC--chHHHHHHHHhCCCCCeEEEEcchhh--CCcCccCCcchhhcC
Confidence 35689999999999999999999999999999997 66666655444433447999999999 999999 8
Q ss_pred CCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 689 IQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 689 V~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
+.|||||++|.++..|.||+|||||+| .|++++++|..|. |-|+.|.++...|+.
T Consensus 549 glhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~--l~r~fg~~~~~~~m~ 604 (822)
T 3jux_A 549 GLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD--LLRIFGSEQIGKVMN 604 (822)
T ss_dssp SCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH--HHHHTTHHHHHHHHH
T ss_pred CCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH--HHHhhhHHHHHHHHH
Confidence 889999999999999999999999998 6999999999883 346789999888886
No 70
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.87 E-value=1.4e-21 Score=235.77 Aligned_cols=110 Identities=12% Similarity=0.223 Sum_probs=99.7
Q ss_pred cCCCcEEEEecchhcHHHHHHHHHh-CCCceEeecCCCCHHHHHHHHHHHhcCC--ccEEEEcccccccCccccCCCCeE
Q 004428 616 SIQGGIMLFLSSYFEFVRLRNFLKS-QNASFCLLGDYTEPSDISRARVWFFEGK--RKMILYTERSHFYHRYKIRGIQNL 692 (754)
Q Consensus 616 ~~~~~tLIFv~Sy~d~vrlrn~Lk~-~~~~f~~Ihey~sq~~r~rar~~F~~G~--~~ILL~TErahffRr~dIkgV~~V 692 (754)
....++||||++...+..|..+|+. .|+++..+||.+++.+|.+++..|++|+ ++|||+|+++. +|+||+++++|
T Consensus 501 ~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~--~GlDl~~~~~V 578 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGS--EGRNFQFASHM 578 (968)
T ss_dssp TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTT--CSSCCTTCCEE
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhh--cCCCcccCcEE
Confidence 4578999999999999999999995 6999999999999999999999999998 99999999999 99999999999
Q ss_pred EEccCCCCCCchhhhccccCCCC-Cce--EEEEechhc
Q 004428 693 IIYSLPERKEFYPEIVNMLEGSH-NMT--CTVLFSRFD 727 (754)
Q Consensus 693 IfY~lP~~pefY~erigrt~ra~-~g~--~~~L~sk~D 727 (754)
|+|++|.+|..|.|++||++|.| .+. ++.+++...
T Consensus 579 I~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 579 VMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKT 616 (968)
T ss_dssp ECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTS
T ss_pred EEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCCh
Confidence 99999999999999999999987 343 444455443
No 71
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.86 E-value=6.4e-20 Score=203.48 Aligned_cols=108 Identities=11% Similarity=0.016 Sum_probs=93.2
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHhcC-Ccc-EEEEcccccccCccccCCCCeEE
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQ-NASFCLLGDYTEPSDISRARVWFFEG-KRK-MILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~-~~~f~~Ihey~sq~~r~rar~~F~~G-~~~-ILL~TErahffRr~dIkgV~~VI 693 (754)
...++|||+++......|..+|++. ++.+..+||.+++.+|.+++..|++| .++ ||++|+.+. +|+++.++++||
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~--~Glnl~~~~~vi 417 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGG--FGINLTSANRVI 417 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC---CCCCCTTCSEEE
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccccc--CCCchhhCCEEE
Confidence 4579999999999999999999986 99999999999999999999999999 565 899999999 999999999999
Q ss_pred EccCCCCCCchhhhccccCCCCC---ceEEEEechh
Q 004428 694 IYSLPERKEFYPEIVNMLEGSHN---MTCTVLFSRF 726 (754)
Q Consensus 694 fY~lP~~pefY~erigrt~ra~~---g~~~~L~sk~ 726 (754)
+|++|-+|..|.+++||++|.|. ..+.-|+++.
T Consensus 418 ~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 418 HFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp ESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred EeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 99999999999999999999872 3445566654
No 72
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.85 E-value=2e-20 Score=179.49 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=124.8
Q ss_pred cccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHH
Q 004428 578 VLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDI 657 (754)
Q Consensus 578 v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r 657 (754)
...+|+|.|..++. +.|+..+.. + +.....+++||||++...+..|...|+..++.+..+|+.+++.+|
T Consensus 6 ~~~~i~~~~~~~~~-------~~K~~~L~~-l---l~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r 74 (163)
T 2hjv_A 6 TTRNIEHAVIQVRE-------ENKFSLLKD-V---LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDR 74 (163)
T ss_dssp CCCCEEEEEEECCG-------GGHHHHHHH-H---HHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred CcccceEEEEECCh-------HHHHHHHHH-H---HHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHH
Confidence 35579999998763 235543222 2 233456799999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 658 SRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 658 ~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
.+++..|++|+.+|||+|+.+. +|+||+++++||+|++|.++..|.||+||++|.+ .|.|++|++..|...+.+|
T Consensus 75 ~~~~~~f~~g~~~vlv~T~~~~--~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i 150 (163)
T 2hjv_A 75 FDVMNEFKRGEYRYLVATDVAA--RGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADI 150 (163)
T ss_dssp HHHHHHHHTTSCSEEEECGGGT--TTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEECChhh--cCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHH
Confidence 9999999999999999999999 9999999999999999999999999999999987 7999999999887555433
No 73
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=3e-20 Score=179.97 Aligned_cols=143 Identities=14% Similarity=0.140 Sum_probs=120.3
Q ss_pred ccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHH
Q 004428 579 LLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDIS 658 (754)
Q Consensus 579 ~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~ 658 (754)
..+|+|.|..++. .+.|+..+. ..+.....+++||||++...+..|..+|...++.+..+|+.+++.+|.
T Consensus 5 ~~~i~q~~~~~~~------~~~K~~~L~----~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~ 74 (175)
T 2rb4_A 5 LNNIRQYYVLCEH------RKDKYQALC----NIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRA 74 (175)
T ss_dssp BCCEEEEEEECSS------HHHHHHHHH----HHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHH
T ss_pred cCCceEEEEEcCC------hHhHHHHHH----HHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHH
Confidence 4579999998763 234655322 222333567999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCC------CCCCchhhhccccCCCC-CceEEEEechhcHHHH
Q 004428 659 RARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLP------ERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRL 731 (754)
Q Consensus 659 rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP------~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~L 731 (754)
+++..|++|+++|||+|+.+. ||+||+++++||+|++| .++..|.||+||+||.+ .|.|++|++..|...+
T Consensus 75 ~~~~~f~~g~~~vLvaT~~~~--~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~ 152 (175)
T 2rb4_A 75 SIIQRFRDGKEKVLITTNVCA--RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSL 152 (175)
T ss_dssp HHHHHHHTTSCSEEEECCSCC--TTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHH
T ss_pred HHHHHHHcCCCeEEEEecchh--cCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHH
Confidence 999999999999999999999 99999999999999999 88999999999999987 6899999998886554
Q ss_pred HH
Q 004428 732 ER 733 (754)
Q Consensus 732 Er 733 (754)
.+
T Consensus 153 ~~ 154 (175)
T 2rb4_A 153 MK 154 (175)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 74
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=186.16 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=119.0
Q ss_pred HhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHH
Q 004428 556 HHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLR 635 (754)
Q Consensus 556 ~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlr 635 (754)
.++.|+ ..|.+... ......|.|.|..++. ..|+.++. .+.....+++||||++...+..|.
T Consensus 10 ~~~~~p-~~i~v~~~-----~~~~~~i~q~~~~~~~-------~~K~~~L~-----~~l~~~~~~~lVF~~~~~~~~~l~ 71 (191)
T 2p6n_A 10 GVDLGT-ENLYFQSM-----GAASLDVIQEVEYVKE-------EAKMVYLL-----ECLQKTPPPVLIFAEKKADVDAIH 71 (191)
T ss_dssp ------------------------CCSEEEEEECCG-------GGHHHHHH-----HHHTTSCSCEEEECSCHHHHHHHH
T ss_pred cccCCC-EEEEECCC-----CCCCcCceEEEEEcCh-------HHHHHHHH-----HHHHhCCCCEEEEECCHHHHHHHH
Confidence 355554 34544322 2346789999998763 23554322 233334568999999999999999
Q ss_pred HHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC
Q 004428 636 NFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH 715 (754)
Q Consensus 636 n~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~ 715 (754)
.+|+..++.+..+|+.+++.+|.+++..|++|+.+|||+|+++. ||+||++|++||+|++|.++..|.||+||+||.+
T Consensus 72 ~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~--~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g 149 (191)
T 2p6n_A 72 EYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS--KGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSG 149 (191)
T ss_dssp HHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHH--TTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC--
T ss_pred HHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchh--cCCCcccCCEEEEeCCCCCHHHHHHHhCccccCC
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999997
Q ss_pred -CceEEEEechh-cHHHH
Q 004428 716 -NMTCTVLFSRF-DMLRL 731 (754)
Q Consensus 716 -~g~~~~L~sk~-D~~~L 731 (754)
.|.|++|++.. |...+
T Consensus 150 ~~g~~i~l~~~~~~~~~~ 167 (191)
T 2p6n_A 150 NTGIATTFINKACDESVL 167 (191)
T ss_dssp -CCEEEEEECTTSCHHHH
T ss_pred CCcEEEEEEcCchhHHHH
Confidence 79999999976 54433
No 75
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.83 E-value=6.7e-20 Score=175.85 Aligned_cols=142 Identities=12% Similarity=0.141 Sum_probs=118.6
Q ss_pred cceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHH
Q 004428 580 LNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISR 659 (754)
Q Consensus 580 ~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~r 659 (754)
.+|+|.|..++.. +.|+..+ ...+.....+++||||++...+..|...|+..++.+..+|+.+++.+|.+
T Consensus 2 ~~i~~~~~~~~~~------~~K~~~l----~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 71 (165)
T 1fuk_A 2 EGIKQFYVNVEEE------EYKYECL----TDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDT 71 (165)
T ss_dssp --CEEEEEEEESG------GGHHHHH----HHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred CCcEEEEEECCcc------hhHHHHH----HHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHH
Confidence 3588999987642 2244422 22223335689999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHH
Q 004428 660 ARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLER 733 (754)
Q Consensus 660 ar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LEr 733 (754)
++..|++|+.+|||+|+.+. +|+||+++++||+|++|.++..|.||+||+||.+ .|.|++|++..|...+.+
T Consensus 72 ~~~~f~~g~~~vlv~T~~~~--~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~ 144 (165)
T 1fuk_A 72 IMKEFRSGSSRILISTDLLA--RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRE 144 (165)
T ss_dssp HHHHHHTTSCSEEEEEGGGT--TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHH
T ss_pred HHHHHHcCCCEEEEEcChhh--cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHH
Confidence 99999999999999999999 9999999999999999999999999999999987 699999999888655533
No 76
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.82 E-value=4.8e-20 Score=179.00 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=122.9
Q ss_pred ccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHH
Q 004428 579 LLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDIS 658 (754)
Q Consensus 579 ~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~ 658 (754)
...|+|.|..++. +.|+..+ +..+......++||||++...+..|...|...++.+..+|+.+++.+|.
T Consensus 3 ~~~i~q~~~~~~~-------~~K~~~L----~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~ 71 (172)
T 1t5i_A 3 LHGLQQYYVKLKD-------NEKNRKL----FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERL 71 (172)
T ss_dssp --CCEEEEEECCG-------GGHHHHH----HHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH
T ss_pred cCCeEEEEEECCh-------HHHHHHH----HHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHH
Confidence 3568999998764 2355422 2223334567999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechh-cH---HHHHH
Q 004428 659 RARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRF-DM---LRLER 733 (754)
Q Consensus 659 rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~-D~---~~LEr 733 (754)
+++..|++|+.+|||+|+.+. ||+||+++++||+|++|.++..|.||+||++|.+ .|.|++|++.. |. ..|++
T Consensus 72 ~~~~~f~~g~~~vLvaT~~~~--~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~ 149 (172)
T 1t5i_A 72 SRYQQFKDFQRRILVATNLFG--RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 149 (172)
T ss_dssp HHHHHHHTTSCSEEEESSCCS--TTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcEEEECCchh--cCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999987 68999999865 33 34455
Q ss_pred HhCc
Q 004428 734 IVGS 737 (754)
Q Consensus 734 IVGt 737 (754)
.++.
T Consensus 150 ~~~~ 153 (172)
T 1t5i_A 150 RFEV 153 (172)
T ss_dssp HHCC
T ss_pred HHhc
Confidence 5444
No 77
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.82 E-value=4.5e-20 Score=214.59 Aligned_cols=117 Identities=8% Similarity=-0.039 Sum_probs=108.6
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEcc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYS 696 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~ 696 (754)
...++||||+|...+.+|..+|+..++++..+|+.+++.+|.+++..|+.|+++|||+|++++ ||+||++|++||+|+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~--~GlDip~v~lVi~~d 521 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR--EGLDIPEVSLVAILD 521 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCS--TTCCCTTEEEEEETT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhh--CCcccCCCCEEEEeC
Confidence 346999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred C-----CCCCCchhhhccccCCCCCceEEEEechhcHHHHHHHh
Q 004428 697 L-----PERKEFYPEIVNMLEGSHNMTCTVLFSRFDMLRLERIV 735 (754)
Q Consensus 697 l-----P~~pefY~erigrt~ra~~g~~~~L~sk~D~~~LErIV 735 (754)
+ |.++..|.||+||+||+..|.|++|+++.+...+..|-
T Consensus 522 ~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 522 ADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp TTCCTTTTSHHHHHHHHHTTTTSTTCEEEEECSSCCHHHHHHHH
T ss_pred cccccCCCCHHHHHHHhCcccCCCCCEEEEEEeCCCHHHHHHHH
Confidence 8 99999999999999999889999999987764444433
No 78
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.80 E-value=1.9e-19 Score=180.56 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=110.6
Q ss_pred hcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEE
Q 004428 615 DSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLII 694 (754)
Q Consensus 615 ~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIf 694 (754)
....+++||||++......|...|.+.++.+..+|+.+++.+|.+++..|++|+++|||+|+++. ||+||++|++||+
T Consensus 28 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~--~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 28 VASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA--RGLDIPQVDLVVH 105 (212)
T ss_dssp HHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTT--CSSSCCCBSEEEE
T ss_pred hCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhh--cCCCCccCcEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHH---HHHhC
Q 004428 695 YSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRL---ERIVG 736 (754)
Q Consensus 695 Y~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~L---ErIVG 736 (754)
|++|.++..|.||+||+||.+ .|.|++||+..|...+ ++.++
T Consensus 106 ~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 151 (212)
T 3eaq_A 106 YRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 151 (212)
T ss_dssp SSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHS
T ss_pred CCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhc
Confidence 999999999999999999997 7999999998885544 44444
No 79
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=178.05 Aligned_cols=143 Identities=14% Similarity=0.149 Sum_probs=109.4
Q ss_pred cccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHH
Q 004428 578 VLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDI 657 (754)
Q Consensus 578 v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r 657 (754)
...+|.|.|..++.. .|+..+.. +|... ....++||||++...+..|..+|+..++.+..+|+.+++.+|
T Consensus 16 ~~~~i~q~~~~v~~~-------~K~~~L~~-ll~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r 85 (185)
T 2jgn_A 16 TSENITQKVVWVEES-------DKRSFLLD-LLNAT--GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 85 (185)
T ss_dssp CCTTEEEEEEECCGG-------GHHHHHHH-HHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------
T ss_pred CCCCceEEEEEeCcH-------HHHHHHHH-HHHhc--CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHH
Confidence 456899999987632 34443322 32221 145789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHH
Q 004428 658 SRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLE 732 (754)
Q Consensus 658 ~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LE 732 (754)
.+++..|++|+++|||+|+.+. +|+||+++.+||+|++|.++..|.+|+||++|.+ .|.|++|++..|...+.
T Consensus 86 ~~~~~~f~~g~~~vLvaT~~~~--~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~ 159 (185)
T 2jgn_A 86 EEALHQFRSGKSPILVATAVAA--RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK 159 (185)
T ss_dssp CHHHHHHHHTSSSEEEEEC--------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHH
T ss_pred HHHHHHHHcCCCeEEEEcChhh--cCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHH
Confidence 9999999999999999999999 9999999999999999999999999999999987 79999999988854443
No 80
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.79 E-value=5.3e-19 Score=187.63 Aligned_cols=144 Identities=17% Similarity=0.181 Sum_probs=119.8
Q ss_pred ceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHH
Q 004428 581 NVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRA 660 (754)
Q Consensus 581 ~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~ra 660 (754)
.++|.+..+... .|+..... + +.....+++||||++......|...|...++.+..+|+.+++.+|.++
T Consensus 2 ~v~~~~i~~~~~-------~K~~~L~~-l---l~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~ 70 (300)
T 3i32_A 2 TYEEEAVPAPVR-------GRLEVLSD-L---LYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERV 70 (300)
T ss_dssp CSEEEEEECCSS-------SHHHHHHH-H---HHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHH
T ss_pred ceEEEEEECCHH-------HHHHHHHH-H---HHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHH
Confidence 467888876643 24442221 2 223347899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHH---HHHHhC
Q 004428 661 RVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLR---LERIVG 736 (754)
Q Consensus 661 r~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~---LErIVG 736 (754)
+..|++|+++|||+|+++. ||+||++|++||||++|.++..|.||+||+||.+ .|.|+.||+..|... |++.++
T Consensus 71 ~~~f~~g~~~vLVaT~va~--~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~ 148 (300)
T 3i32_A 71 MGAFRQGEVRVLVATDVAA--RGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 148 (300)
T ss_dssp HHHHHHTSCCEEEECSTTT--CSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHT
T ss_pred HHHhhcCCceEEEEechhh--cCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhC
Confidence 9999999999999999999 9999999999999999999999999999999997 799999999888544 455554
Q ss_pred c
Q 004428 737 S 737 (754)
Q Consensus 737 t 737 (754)
.
T Consensus 149 ~ 149 (300)
T 3i32_A 149 R 149 (300)
T ss_dssp C
T ss_pred C
Confidence 3
No 81
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.79 E-value=6.7e-19 Score=204.88 Aligned_cols=120 Identities=8% Similarity=-0.058 Sum_probs=110.3
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEcc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYS 696 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~ 696 (754)
...++||||+|...+.+|..+|.+.++.+..+|+.+++.+|.+++..|+.|+++|||+|+.++ +|+||++|++||+|+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~--~GlDip~v~lVI~~d 515 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLR--EGLDIPEVSLVAILD 515 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCC--TTCCCTTEEEEEETT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhh--cCccCCCCCEEEEeC
Confidence 357999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred C-----CCCCCchhhhccccCCCCCceEEEEechhcHHHHHHHhCch
Q 004428 697 L-----PERKEFYPEIVNMLEGSHNMTCTVLFSRFDMLRLERIVGSA 738 (754)
Q Consensus 697 l-----P~~pefY~erigrt~ra~~g~~~~L~sk~D~~~LErIVGt~ 738 (754)
+ |.++..|.||+||+||.+.|.|+++++..+...+..|-.+.
T Consensus 516 ~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~~~~~~i~~~~ 562 (664)
T 1c4o_A 516 ADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAIEETN 562 (664)
T ss_dssp TTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCCHHHHHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHCccCcCCCCEEEEEEcCCCHHHHHHHHHHH
Confidence 8 99999999999999999999999999887765554444433
No 82
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.76 E-value=2.3e-16 Score=182.66 Aligned_cols=116 Identities=7% Similarity=0.047 Sum_probs=102.0
Q ss_pred HhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCcc---EEEEcccccccCccc
Q 004428 609 VFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRK---MILYTERSHFYHRYK 685 (754)
Q Consensus 609 iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~---ILL~TErahffRr~d 685 (754)
+|..+......++|||+........|..+|...++.++.|||.+++.+|.+++..|.+|... |||+|+.+. .|++
T Consensus 407 ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g--~Gln 484 (644)
T 1z3i_X 407 ILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGG--CGLN 484 (644)
T ss_dssp HHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSC--TTCC
T ss_pred HHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEeccccc--CCcc
Confidence 44444333567999999999999999999999999999999999999999999999999764 899999999 9999
Q ss_pred cCCCCeEEEccCCCCCCchhhhccccCCCCC---ceEEEEechh
Q 004428 686 IRGIQNLIIYSLPERKEFYPEIVNMLEGSHN---MTCTVLFSRF 726 (754)
Q Consensus 686 IkgV~~VIfY~lP~~pefY~erigrt~ra~~---g~~~~L~sk~ 726 (754)
+.++++||+|++|-+|..|.+++||+.|.|. ..+.-|+++.
T Consensus 485 l~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 485 LIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp CTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred cccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 9999999999999999999999999999873 3455566654
No 83
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.61 E-value=7.9e-20 Score=176.44 Aligned_cols=147 Identities=15% Similarity=0.236 Sum_probs=122.6
Q ss_pred ceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHH
Q 004428 581 NVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRA 660 (754)
Q Consensus 581 ~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~ra 660 (754)
+|.|.|..++.. +.|+..+. .+ +.....+++||||++...+..|..+|+..++.+..+|+.+++.+|.++
T Consensus 3 ~i~~~~~~~~~~------~~k~~~l~-~l---l~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~ 72 (170)
T 2yjt_D 3 KIHQWYYRADDL------EHKTALLV-HL---LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEA 72 (170)
Confidence 477888776531 23443221 12 222345789999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHH---HHHHhC
Q 004428 661 RVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLR---LERIVG 736 (754)
Q Consensus 661 r~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~---LErIVG 736 (754)
+..|++|+.+|||+|+.+. +|+||+++++||+|++|.++..|.||+||+||.+ .|.|++|++..|... +++..+
T Consensus 73 ~~~f~~g~~~vLvaT~~~~--~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (170)
T 2yjt_D 73 IKRLTEGRVNVLVATDVAA--RGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIE 150 (170)
Confidence 9999999999999999999 9999999999999999999999999999999987 789999998887544 455555
Q ss_pred chH
Q 004428 737 SAH 739 (754)
Q Consensus 737 t~r 739 (754)
.+.
T Consensus 151 ~~~ 153 (170)
T 2yjt_D 151 EPI 153 (170)
Confidence 443
No 84
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.9e-15 Score=178.94 Aligned_cols=108 Identities=10% Similarity=0.051 Sum_probs=98.6
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCcc---EEEEcccccccCccccCCCCeEE
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRK---MILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~---ILL~TErahffRr~dIkgV~~VI 693 (754)
...++|||+........|..+|...++.++.|||.+++.+|.+++..|.+|... |||+|..+. .|+++..+.+||
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg--~GlNL~~a~~VI 648 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGG--LGINLMTADTVV 648 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHT--TTCCCTTCCEEE
T ss_pred CCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccccc--CCCCccccceEE
Confidence 346999999999999999999999999999999999999999999999997654 999999999 999999999999
Q ss_pred EccCCCCCCchhhhccccCCCC---CceEEEEechh
Q 004428 694 IYSLPERKEFYPEIVNMLEGSH---NMTCTVLFSRF 726 (754)
Q Consensus 694 fY~lP~~pefY~erigrt~ra~---~g~~~~L~sk~ 726 (754)
+|++|-+|..+..++||+.|-| ...++-|+++.
T Consensus 649 ~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 649 IFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp ESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred EecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 9999999999999999999877 34566677755
No 85
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.71 E-value=6.3e-17 Score=163.64 Aligned_cols=166 Identities=13% Similarity=0.130 Sum_probs=118.0
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
.+++|.++++.+.++++++.+++|| +|||.+|.+++++++.....
T Consensus 62 ~~~~q~~~i~~i~~g~~~~i~g~TG---------sGKTt~~~~~~~~~~~~~~~-------------------------- 106 (235)
T 3llm_A 62 VKKFESEILEAISQNSVVIIRGATG---------CGKTTQVPQFILDDFIQNDR-------------------------- 106 (235)
T ss_dssp GGGGHHHHHHHHHHCSEEEEECCTT---------SSHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred hHHHHHHHHHHHhcCCEEEEEeCCC---------CCcHHhHHHHHhcchhhcCC--------------------------
Confidence 3789999999999999999999998 89999999999999875411
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
...+++|+++|||++|.|+.+.+.......- ....|.
T Consensus 107 ----~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~----------~~~~g~----------------------------- 143 (235)
T 3llm_A 107 ----AAECNIVVTQPRRISAVSVAERVAFERGEEP----------GKSCGY----------------------------- 143 (235)
T ss_dssp ----GGGCEEEEEESSHHHHHHHHHHHHHTTTCCT----------TSSEEE-----------------------------
T ss_pred ----CCceEEEEeccchHHHHHHHHHHHHHhcccc----------CceEEE-----------------------------
Confidence 1257899999999999999988876543210 000000
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhh-h-
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADII-L- 495 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~m-L- 495 (754)
++.+.++.. -.+++|+||||++|.+++.. .|+.+.+|||||||.+ +
T Consensus 144 -----------------~~~~~~~~~-----~~~~~Ivv~Tpg~l~~~l~~----------~l~~~~~lVlDEah~~~~~ 191 (235)
T 3llm_A 144 -----------------SVRFESILP-----RPHASIMFCTVGVLLRKLEA----------GIRGISHVIVDEIHERDIN 191 (235)
T ss_dssp -----------------EETTEEECC-----CSSSEEEEEEHHHHHHHHHH----------CCTTCCEEEECCTTSCCHH
T ss_pred -----------------eechhhccC-----CCCCeEEEECHHHHHHHHHh----------hhcCCcEEEEECCccCCcc
Confidence 011111000 03589999999999999862 3899999999999996 5
Q ss_pred hcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCC
Q 004428 496 MQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANY 561 (754)
Q Consensus 496 mQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~ 561 (754)
|.+. ..+..++. ..|. +|+|+||||++.+. +.+++.+.
T Consensus 192 ~~~~~~~l~~i~~---~~~~----------------------~~~il~SAT~~~~~---~~~~~~~~ 230 (235)
T 3llm_A 192 TDFLLVVLRDVVQ---AYPE----------------------VRIVLMSATIDTSM---FCEYFFNC 230 (235)
T ss_dssp HHHHHHHHHHHHH---HCTT----------------------SEEEEEECSSCCHH---HHHHTTSC
T ss_pred hHHHHHHHHHHHh---hCCC----------------------CeEEEEecCCCHHH---HHHHcCCC
Confidence 3322 12333332 2232 79999999999876 55666553
No 86
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.69 E-value=1.3e-14 Score=171.60 Aligned_cols=136 Identities=13% Similarity=0.026 Sum_probs=100.1
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
.|+ . |||+|..++|++++|+ ++.++|| +|||.+|+||++-+.+.
T Consensus 76 lG~-~-Pt~VQ~~~ip~LlqG~--IaeakTG---------eGKTLvf~Lp~~L~aL~----------------------- 119 (997)
T 2ipc_A 76 LGM-R-HFDVQLIGGAVLHEGK--IAEMKTG---------EGKTLVATLAVALNALT----------------------- 119 (997)
T ss_dssp TCC-C-CCHHHHHHHHHHHTTS--EEECCST---------HHHHHHHHHHHHHHHTT-----------------------
T ss_pred hCC-C-CcHHHHhhcccccCCc--eeeccCC---------CchHHHHHHHHHHHHHh-----------------------
Confidence 577 3 8999999999999998 8999998 99999999999755541
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
| .+|+||+|||+||.|+.+.+..|....+ + +....+|
T Consensus 120 ---------G---~qv~VvTPTreLA~Qdae~m~~l~~~lG-L------sv~~i~G------------------------ 156 (997)
T 2ipc_A 120 ---------G---KGVHVVTVNDYLARRDAEWMGPVYRGLG-L------SVGVIQH------------------------ 156 (997)
T ss_dssp ---------C---SCCEEEESSHHHHHHHHHHHHHHHHTTT-C------CEEECCT------------------------
T ss_pred ---------C---CCEEEEeCCHHHHHHHHHHHHHHHHhcC-C------eEEEEeC------------------------
Confidence 1 2589999999999999999999864332 1 1112222
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhH-HHHHhhhhcccccCcccCC---ceeEEE
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINL-HQKMTKAEENKEQDVDYLS---SIEVLI 487 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgL-r~lI~~~e~~k~rd~dfLS---SIEiLV 487 (754)
| +....+... |++||+||||++| .++|..... ...+...++ .+.++|
T Consensus 157 --------------g---------~~~~~r~~a-----y~~DIvyGTpgrlgfDyLrd~m~-~~~~~l~~r~d~~l~~lI 207 (997)
T 2ipc_A 157 --------------A---------STPAERRKA-----YLADVTYVTNSELGFDYLRDNMA-ISPDQLVLRHDHPLHYAI 207 (997)
T ss_dssp --------------T---------CCHHHHHHH-----HTSSEEEEEHHHHHHHHHHHTSC-SSTTTCCSCSSSSSCEEE
T ss_pred --------------C---------CCHHHHHHH-----cCCCEEEECchhhhhHHHHHhhh-cchhhcccccCCCcceEE
Confidence 2 222222332 5799999999999 888863110 001223477 899999
Q ss_pred Eecchhhh
Q 004428 488 IDHADIIL 495 (754)
Q Consensus 488 lDeAD~mL 495 (754)
|||||.||
T Consensus 208 IDEaDsmL 215 (997)
T 2ipc_A 208 IDEVDSIL 215 (997)
T ss_dssp ETTHHHHT
T ss_pred EechHHHH
Confidence 99999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.63 E-value=1.4e-14 Score=164.55 Aligned_cols=84 Identities=14% Similarity=0.273 Sum_probs=54.4
Q ss_pred HHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEE--EcccccccCccccCC
Q 004428 611 PKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMIL--YTERSHFYHRYKIRG 688 (754)
Q Consensus 611 p~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL--~TErahffRr~dIkg 688 (754)
..+.....+++|||+|||.....+...|+. +. +.+++.. .++.+.++.|+.|. .||+ +|+.+. +|+|++|
T Consensus 377 ~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~--EGiD~~~ 448 (540)
T 2vl7_A 377 KRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKES--EGVEFRE 448 (540)
T ss_dssp HHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC--------------
T ss_pred HHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCcee--cceecCC
Confidence 334445678999999999999999988865 22 3444443 56888999999875 7888 778755 9999999
Q ss_pred ----CCeEEEccCCCCCC
Q 004428 689 ----IQNLIIYSLPERKE 702 (754)
Q Consensus 689 ----V~~VIfY~lP~~pe 702 (754)
+++||+++||--+.
T Consensus 449 ~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 449 KENLFESLVLAGLPYPNV 466 (540)
T ss_dssp ---CEEEEEEESCCCCCT
T ss_pred CcccccEEEEECCCCCCC
Confidence 89999999994443
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.59 E-value=4.7e-15 Score=144.78 Aligned_cols=150 Identities=14% Similarity=0.119 Sum_probs=98.5
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|+|.|.++++.++++++++..++|| +|||.+|++++++++...+.
T Consensus 34 l~~~Q~~~i~~~~~~~~~li~~~tG---------sGKT~~~~~~~~~~~~~~~~-------------------------- 78 (216)
T 3b6e_A 34 LRPYQMEVAQPALEGKNIIICLPTG---------SGKTRVAVYIAKDHLDKKKK-------------------------- 78 (216)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECSCH---------HHHHHHHHHHHHHHHHHHHH--------------------------
T ss_pred chHHHHHHHHHHhcCCCEEEEcCCC---------CCHHHHHHHHHHHHHhhccc--------------------------
Confidence 7999999999999999999999998 99999999999998864310
Q ss_pred ccCCCCCceEEEEccchhHHHH-HHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALN-VVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSK 416 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~q-Iv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~K 416 (754)
....+++|||+|||+||.| +.+.+.++....- +....+|+...
T Consensus 79 ---~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~--------~v~~~~g~~~~------------------------- 122 (216)
T 3b6e_A 79 ---ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWY--------RVIGLSGDTQL------------------------- 122 (216)
T ss_dssp ---TTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTS--------CEEECCC---C-------------------------
T ss_pred ---ccCCCcEEEEECHHHHHHHHHHHHHHHHhccCc--------eEEEEeCCccc-------------------------
Confidence 0124689999999999999 6677777754311 11122221100
Q ss_pred CCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhh-
Q 004428 417 PSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL- 495 (754)
Q Consensus 417 P~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL- 495 (754)
......+ . .+++|+|+||..|...+..... ......++..+.++||||||.|+
T Consensus 123 --------------------~~~~~~~--~---~~~~i~v~T~~~l~~~~~~~~~-~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 123 --------------------KISFPEV--V---KSCDIIISTAQILENSLLNLEN-GEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp --------------------CCCHHHH--H---HHCSEEEEEHHHHHHHHHC--------CCCGGGCSEEEETTC-----
T ss_pred --------------------chhHHhh--c---cCCCEEEECHHHHHHHHhccCc-ccccccchhcccEEEEECchhhcc
Confidence 0011111 1 2489999999999998863110 00112458899999999999998
Q ss_pred hcCchHHHH
Q 004428 496 MQNWSWLIE 504 (754)
Q Consensus 496 mQNw~hv~~ 504 (754)
.+.|..+..
T Consensus 177 ~~~~~~~~~ 185 (216)
T 3b6e_A 177 EAVYNNIMR 185 (216)
T ss_dssp --CHHHHHH
T ss_pred CCcHHHHHH
Confidence 446766543
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.53 E-value=1.1e-12 Score=149.21 Aligned_cols=83 Identities=11% Similarity=0.145 Sum_probs=58.8
Q ss_pred hhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC---C-
Q 004428 613 IKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR---G- 688 (754)
Q Consensus 613 l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk---g- 688 (754)
+.....+++|||+|||..-..+... .+.....=...++ +...+..|+....-||++|=+..|+-|+|++ |
T Consensus 388 l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~ 461 (551)
T 3crv_A 388 IYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRS 461 (551)
T ss_dssp HHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEE
T ss_pred HHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCc
Confidence 3345678999999999888777752 2333322222333 3456777754445899999877888999999 5
Q ss_pred -CCeEEEccCCCCC
Q 004428 689 -IQNLIIYSLPERK 701 (754)
Q Consensus 689 -V~~VIfY~lP~~p 701 (754)
.+.||..+||--+
T Consensus 462 ~l~~viI~~lPfp~ 475 (551)
T 3crv_A 462 LISDVVIVGIPYPP 475 (551)
T ss_dssp SEEEEEEESCCCCC
T ss_pred ceeEEEEEcCCCCC
Confidence 8999999999643
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.49 E-value=2.2e-13 Score=140.88 Aligned_cols=152 Identities=10% Similarity=0.050 Sum_probs=107.8
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|+|.|+++++.++.+.+.+.++.|| +|||.++++.++.++.+.
T Consensus 114 l~~~Q~~ai~~~l~~~~~ll~~~tG---------sGKT~~~~~~~~~~~~~~---------------------------- 156 (282)
T 1rif_A 114 PHWYQKDAVFEGLVNRRRILNLPTS---------AGRSLIQALLARYYLENY---------------------------- 156 (282)
T ss_dssp CCHHHHHHHHHHHHHSEEEECCCTT---------SCHHHHHHHHHHHHHHHC----------------------------
T ss_pred ccHHHHHHHHHHHhcCCeEEEcCCC---------CCcHHHHHHHHHHHHHcC----------------------------
Confidence 7899999999988888888899998 899999999888776421
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
..+||||+|||+||.|+.+.+.++..... .+....+|+.
T Consensus 157 ------~~~~lil~Pt~~L~~q~~~~l~~~~~~~~-------~~~~~~~~~~---------------------------- 195 (282)
T 1rif_A 157 ------EGKILIIVPTTALTTQMADDFVDYRLFSH-------AMIKKIGGGA---------------------------- 195 (282)
T ss_dssp ------SSEEEEECSSHHHHHHHHHHHHHHTSCCG-------GGEEECSTTC----------------------------
T ss_pred ------CCeEEEEECCHHHHHHHHHHHHHhccccc-------ceEEEEeCCC----------------------------
Confidence 23799999999999999999998854221 1122222221
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
..+. . ...+++|+|+||..|... ...++..+.++||||||+|.-
T Consensus 196 ----------~~~~------------~---~~~~~~I~v~T~~~l~~~----------~~~~~~~~~~vIiDEaH~~~~- 239 (282)
T 1rif_A 196 ----------SKDD------------K---YKNDAPVVVGTWQTVVKQ----------PKEWFSQFGMMMNDECHLATG- 239 (282)
T ss_dssp ----------SSTT------------C---CCTTCSEEEECHHHHTTS----------CGGGGGGEEEEEEETGGGCCH-
T ss_pred ----------cchh------------h---hccCCcEEEEchHHHHhh----------HHHHHhhCCEEEEECCccCCc-
Confidence 1000 1 114689999999876432 123678999999999999983
Q ss_pred CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHH
Q 004428 498 NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE 549 (754)
Q Consensus 498 Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pe 549 (754)
..+..++ ..++. .+|+|+||||.+..
T Consensus 240 --~~~~~il---~~~~~---------------------~~~~l~lSATp~~~ 265 (282)
T 1rif_A 240 --KSISSII---SGLNN---------------------CMFKFGLSGSLRDG 265 (282)
T ss_dssp --HHHHHHT---TTCTT---------------------CCEEEEECSSCCTT
T ss_pred --ccHHHHH---HHhhc---------------------CCeEEEEeCCCCCc
Confidence 2333333 33322 38999999999754
No 91
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.43 E-value=1.2e-12 Score=136.67 Aligned_cols=123 Identities=11% Similarity=0.041 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHhcC-Ccc-EEEEcc
Q 004428 600 ARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ-NASFCLLGDYTEPSDISRARVWFFEG-KRK-MILYTE 676 (754)
Q Consensus 600 ~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~-~~~f~~Ihey~sq~~r~rar~~F~~G-~~~-ILL~TE 676 (754)
.|+..+. .+|..+.. ...++|||+.+......|..+|.+. ++.+..|||.+++.+|.+++..|++| .++ |||+|+
T Consensus 96 ~K~~~L~-~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 96 GKMIRTM-EIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp HHHHHHH-HHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred HHHHHHH-HHHHHHHh-CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 4565444 35555533 3579999999999999999999985 99999999999999999999999999 778 799999
Q ss_pred cccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC---CceEEEEechh
Q 004428 677 RSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH---NMTCTVLFSRF 726 (754)
Q Consensus 677 rahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~---~g~~~~L~sk~ 726 (754)
.+. +|+++.++++||+||+|-+|..|.+++||++|.| ...++.|+++.
T Consensus 174 ~~g--~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 174 AGG--FGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp TTC--CCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhc--CCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 999 9999999999999999999999999999999987 24456677754
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.19 E-value=6.2e-10 Score=128.74 Aligned_cols=84 Identities=13% Similarity=0.148 Sum_probs=59.7
Q ss_pred hhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCC--CC
Q 004428 613 IKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRG--IQ 690 (754)
Q Consensus 613 l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkg--V~ 690 (754)
+.....+++|||+|||.--..+...|+ .+..- ..-.++..++...+..|+ |+-.||++|-+..|.-|+|++| .+
T Consensus 443 l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~ 518 (620)
T 4a15_A 443 IILKVKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELE 518 (620)
T ss_dssp HHHHHCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCC
T ss_pred HHHhCCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceE
Confidence 333457899999999999888888887 33332 333334568899999999 9999999999888999999998 78
Q ss_pred eEEEccCCCC
Q 004428 691 NLIIYSLPER 700 (754)
Q Consensus 691 ~VIfY~lP~~ 700 (754)
.||..+||--
T Consensus 519 ~viI~~lPfp 528 (620)
T 4a15_A 519 MIILAGLPFP 528 (620)
T ss_dssp EEEESSCCCC
T ss_pred EEEEEcCCCC
Confidence 9999999954
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.09 E-value=2.6e-10 Score=116.16 Aligned_cols=137 Identities=12% Similarity=0.033 Sum_probs=99.3
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
++|.|+++++.++...+++.++.|| +|||.++++.+...
T Consensus 94 l~~~Q~~ai~~~~~~~~~ll~~~tG---------~GKT~~a~~~~~~~-------------------------------- 132 (237)
T 2fz4_A 94 LRDYQEKALERWLVDKRGCIVLPTG---------SGKTHVAMAAINEL-------------------------------- 132 (237)
T ss_dssp CCHHHHHHHHHHTTTSEEEEEESSS---------TTHHHHHHHHHHHS--------------------------------
T ss_pred cCHHHHHHHHHHHhCCCEEEEeCCC---------CCHHHHHHHHHHHc--------------------------------
Confidence 6899999999999999999999998 89999988876431
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
..++||++||++|+.|+.+.+.++. .. +. ..+
T Consensus 133 ------~~~~liv~P~~~L~~q~~~~~~~~~-~~---------~v-~~~------------------------------- 164 (237)
T 2fz4_A 133 ------STPTLIVVPTLALAEQWKERLGIFG-EE---------YV-GEF------------------------------- 164 (237)
T ss_dssp ------CSCEEEEESSHHHHHHHHHHHGGGC-GG---------GE-EEE-------------------------------
T ss_pred ------CCCEEEEeCCHHHHHHHHHHHHhCC-CC---------eE-EEE-------------------------------
Confidence 1358999999999999999988741 10 00 112
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
.|... ...+|+|+||..|...+.. +...+.+|||||||.+...
T Consensus 165 -------~g~~~--------------------~~~~i~v~T~~~l~~~~~~----------~~~~~~llIiDEaH~l~~~ 207 (237)
T 2fz4_A 165 -------SGRIK--------------------ELKPLTVSTYDSAYVNAEK----------LGNRFMLLIFDEVHHLPAE 207 (237)
T ss_dssp -------SSSCB--------------------CCCSEEEEEHHHHHHTHHH----------HTTTCSEEEEECSSCCCTT
T ss_pred -------eCCCC--------------------CcCCEEEEeHHHHHhhHHH----------hcccCCEEEEECCccCCCh
Confidence 22110 1479999999998765541 2345899999999999754
Q ss_pred CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 498 NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 498 Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
.|. .+++.+ +. ++.|++|||...
T Consensus 208 ~~~---~i~~~~---~~----------------------~~~l~LSATp~r 230 (237)
T 2fz4_A 208 SYV---QIAQMS---IA----------------------PFRLGLTATFER 230 (237)
T ss_dssp THH---HHHHTC---CC----------------------SEEEEEEESCC-
T ss_pred HHH---HHHHhc---cC----------------------CEEEEEecCCCC
Confidence 443 333332 21 678999999874
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.79 E-value=5e-05 Score=87.61 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=56.0
Q ss_pred CHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhH--HHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccc
Q 004428 259 SSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIM--ETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDA 336 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt--~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~ 336 (754)
++.|+.+++.++.+++++.++.+| |||| .++++++|.++...
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pG---------TGKTt~l~~ll~~l~~~~~~--------------------------- 194 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPG---------TGKTTTVAKLLAALIQMADG--------------------------- 194 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTT---------STHHHHHHHHHHHHHHTCSS---------------------------
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCC---------CCHHHHHHHHHHHHHHhhhc---------------------------
Confidence 689999999999999999999887 8898 78888888765211
Q ss_pred cccCCCCCceEEEEccchhHHHHHHHHHHHh
Q 004428 337 FLDRGFTRPKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 337 ~RDQGftRPkVLIL~PTRelA~qIv~~l~~L 367 (754)
..++||+++||+.+|.++.+.+..+
T Consensus 195 ------~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 195 ------ERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp ------CCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred ------CCCeEEEEeCChhHHHHHHHHHHHH
Confidence 1368999999999999998877654
No 95
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=82.47 E-value=2.5 Score=50.33 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=61.0
Q ss_pred CCcEEEEecchh----cHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEE
Q 004428 618 QGGIMLFLSSYF----EFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 618 ~~~tLIFv~Sy~----d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI 693 (754)
..++||.+|+.. -+.+++.++...+++++.+|+.++.+++.+.+..+.+|..+|+|+|- +.|.....+.++..||
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~-~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTH-ALIQEDVHFKNLGLVI 495 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECT-THHHHCCCCSCCCEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH-HHHhhhhhccCCceEE
Confidence 468999999975 45555566656689999999999999999999999999999999995 3344556677777777
Q ss_pred E
Q 004428 694 I 694 (754)
Q Consensus 694 f 694 (754)
.
T Consensus 496 I 496 (780)
T 1gm5_A 496 I 496 (780)
T ss_dssp E
T ss_pred e
Confidence 4
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=80.43 E-value=3.4 Score=47.53 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=50.2
Q ss_pred CHHHHHHhhhhhCCccEEEe-cCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 259 SSKQRSFFSLCNSYRDILHS-NKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~Dvl~~-a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
.+-|++++-.+++.+|+... ++= +||||.. +++++.++++.
T Consensus 191 N~~Q~~AV~~al~~~~~~lI~GPP---------GTGKT~t-i~~~I~~l~~~---------------------------- 232 (646)
T 4b3f_X 191 DTSQKEAVLFALSQKELAIIHGPP---------GTGKTTT-VVEIILQAVKQ---------------------------- 232 (646)
T ss_dssp CHHHHHHHHHHHHCSSEEEEECCT---------TSCHHHH-HHHHHHHHHHT----------------------------
T ss_pred CHHHHHHHHHHhcCCCceEEECCC---------CCCHHHH-HHHHHHHHHhC----------------------------
Confidence 57899999988888887553 332 3899975 56777777642
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLT 368 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~ 368 (754)
..+|||++||..+|-.|++.|....
T Consensus 233 ------~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 233 ------GLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp ------TCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred ------CCeEEEEcCchHHHHHHHHHHHhcC
Confidence 2479999999999999999987653
No 97
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=79.58 E-value=6.6 Score=41.74 Aligned_cols=78 Identities=5% Similarity=0.042 Sum_probs=61.9
Q ss_pred CCCcEEEEecchhcHHHHHHHHHh---CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccc-c-cccCccccCCCCe
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKS---QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTER-S-HFYHRYKIRGIQN 691 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~---~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEr-a-hffRr~dIkgV~~ 691 (754)
...++||.+|+..=...+.+.|++ .+++++.+++..+..++...+..+..|..+|+|+|-- + .+++.+....++.
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 457899999999888888888877 6899999999999999988899999999999999842 2 1223344556666
Q ss_pred EEE
Q 004428 692 LII 694 (754)
Q Consensus 692 VIf 694 (754)
||.
T Consensus 143 iVi 145 (414)
T 3oiy_A 143 VFV 145 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 98
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=77.50 E-value=16 Score=39.14 Aligned_cols=127 Identities=6% Similarity=-0.027 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccccc
Q 004428 600 ARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSH 679 (754)
Q Consensus 600 ~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErah 679 (754)
.||. |+.++|+.+.. ...++|||+....-.+-|-.||...+++++-+.|-+..++ .+. .+..+.|.|.|= +.
T Consensus 109 GKf~-~L~~LL~~l~~-~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Llts-ag 180 (328)
T 3hgt_A 109 GKFS-VLRDLINLVQE-YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSS-EG 180 (328)
T ss_dssp HHHH-HHHHHHHHHTT-SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEES-SC
T ss_pred ccHH-HHHHHHHHHHh-CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----ccCCceEEEEEC-CC
Confidence 4676 55678888865 4579999999999999999999999999999999865533 221 245666666652 32
Q ss_pred ccCcc-----ccCCCCeEEEccCCCCCCch-hh---hccccCC--CCCceEEEEechhcHHHHHHHh
Q 004428 680 FYHRY-----KIRGIQNLIIYSLPERKEFY-PE---IVNMLEG--SHNMTCTVLFSRFDMLRLERIV 735 (754)
Q Consensus 680 ffRr~-----dIkgV~~VIfY~lP~~pefY-~e---rigrt~r--a~~g~~~~L~sk~D~~~LErIV 735 (754)
- =|. ...+...||-||.=-||..= .+ |+-|++. .....++-|++..-....+.-+
T Consensus 181 ~-~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 181 I-NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp C-CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred C-CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 1 123 26899999999998888862 22 2335531 1235677777765544443333
No 99
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=75.27 E-value=6.3 Score=48.66 Aligned_cols=80 Identities=5% Similarity=0.012 Sum_probs=66.4
Q ss_pred CCCcEEEEecchhcHHHHHHHHHh---CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-cc-cccCccccCCCCe
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKS---QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RS-HFYHRYKIRGIQN 691 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~---~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-ra-hffRr~dIkgV~~ 691 (754)
...++||.+|+..=+..+.+.|++ .++.++.+|+.++..++.+.+..+..|..+|+|+|- ++ .+...+..++++.
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 457899999999999999998888 678999999999999999999999999999999994 22 2223466788999
Q ss_pred EEEcc
Q 004428 692 LIIYS 696 (754)
Q Consensus 692 VIfY~ 696 (754)
||.=.
T Consensus 200 lViDE 204 (1104)
T 4ddu_A 200 VFVDD 204 (1104)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 88743
No 100
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=75.13 E-value=5.6 Score=45.06 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=28.9
Q ss_pred CCcEEEEecchhcHHHHHHHHHhCCCceEeecC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGD 650 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihe 650 (754)
.+-+.|.+++......|...|...||++....+
T Consensus 347 ~~diaVL~r~~~~~~~l~~~l~~~~Ip~~~~~~ 379 (647)
T 3lfu_A 347 LAECAILYRSNAQSRVLEEALLQASMPYRIYGG 379 (647)
T ss_dssp GGGEEEEESSGGGHHHHHHHHHHTTCCEEESSS
T ss_pred ccCEEEEEeCchhHHHHHHHHHHCCCCEEEeCC
Confidence 567999999999999999999999999986543
No 101
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=74.58 E-value=4.3 Score=50.27 Aligned_cols=76 Identities=9% Similarity=0.162 Sum_probs=58.4
Q ss_pred CCcEEEEecchhcHHHHHH----HHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEE
Q 004428 618 QGGIMLFLSSYFEFVRLRN----FLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn----~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI 693 (754)
..++||.||+..=+..+.+ .|...++.+..++++.+.+++...+..+..|.+.|+|+|=.. +.+.+.++++..||
T Consensus 652 g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~l-l~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 652 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL-LQSDVKFKDLGLLI 730 (1151)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHH-HHSCCCCSSEEEEE
T ss_pred CCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHH-HhCCccccccceEE
Confidence 4689999999865554444 444457899999999999999999999999999999999322 22556666666666
Q ss_pred E
Q 004428 694 I 694 (754)
Q Consensus 694 f 694 (754)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 4
No 102
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=72.43 E-value=8 Score=44.41 Aligned_cols=67 Identities=12% Similarity=0.007 Sum_probs=50.3
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
.++-|+.++-.++...=++..+..| ||||.. +.+++.++++.
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppG---------TGKT~~-~~~~i~~l~~~---------------------------- 222 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPG---------TGKTVT-SATIVYHLARQ---------------------------- 222 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTT---------SCHHHH-HHHHHHHHHTS----------------------------
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCC---------CCHHHH-HHHHHHHHHHc----------------------------
Confidence 3688999998887655556666555 899975 45677777642
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHh
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L 367 (754)
...+|||++||..+|.++.+.|.+.
T Consensus 223 -----~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 223 -----GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp -----SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred -----CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 1247999999999999999998865
No 103
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=70.67 E-value=5.9 Score=46.05 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.9
Q ss_pred EEEEccchhHHHHHHHHHHHhCCcc
Q 004428 347 VLILLPLKSIALNVVKRLIRLTPDA 371 (754)
Q Consensus 347 VLIL~PTRelA~qIv~~l~~L~~~~ 371 (754)
+|||+|+..+|.|+.+.|..+.+..
T Consensus 56 ~lvv~~~~~~A~ql~~el~~~~~~~ 80 (664)
T 1c4o_A 56 ALVLAPNKILAAQLAAEFRELFPEN 80 (664)
T ss_dssp EEEEESSHHHHHHHHHHHHHHCTTS
T ss_pred EEEEecCHHHHHHHHHHHHHHCCCC
Confidence 8999999999999999999997653
No 104
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=69.70 E-value=11 Score=42.18 Aligned_cols=65 Identities=8% Similarity=0.023 Sum_probs=56.6
Q ss_pred HhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc
Q 004428 609 VFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT 675 (754)
Q Consensus 609 iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T 675 (754)
++|.+.. .+.+||.+|+..=.......|+..++.+..+++..+..++...+..+..|..+||++|
T Consensus 58 ~lp~l~~--~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~T 122 (523)
T 1oyw_A 58 QIPALLL--NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIA 122 (523)
T ss_dssp HHHHHHS--SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEEC
T ss_pred HHHHHHh--CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEEC
Confidence 3555543 4789999999988888888899999999999999999999999999999999999888
No 105
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=68.71 E-value=23 Score=35.23 Aligned_cols=73 Identities=11% Similarity=0.107 Sum_probs=51.1
Q ss_pred CCcEEEEecchhcHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-cc----cccCccccCC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKS----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RS----HFYHRYKIRG 688 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-ra----hffRr~dIkg 688 (754)
..++||.+|+..-...+.+.+++ .++.+..+++..+.....+.+ .+..+|+|+|- ++ ...+.+.+..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 45799999998766666655544 489999999988876654443 35789999993 22 1124566778
Q ss_pred CCeEEE
Q 004428 689 IQNLII 694 (754)
Q Consensus 689 V~~VIf 694 (754)
++.||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 888885
No 106
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=65.43 E-value=13 Score=42.81 Aligned_cols=70 Identities=11% Similarity=0.046 Sum_probs=49.4
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
.||-|++++-.. ..-+++.|.-| +|||.+-+-.+ -|++..
T Consensus 3 L~~~Q~~av~~~--~~~~lV~AgaG---------SGKT~~l~~ri-~~ll~~---------------------------- 42 (673)
T 1uaa_A 3 LNPGQQQAVEFV--TGPCLVLAGAG---------SGKTRVITNKI-AHLIRG---------------------------- 42 (673)
T ss_dssp CCHHHHHHHHCC--SSEEEECCCTT---------SCHHHHHHHHH-HHHHHH----------------------------
T ss_pred CCHHHHHHHhCC--CCCEEEEeCCC---------CChHHHHHHHH-HHHHHh----------------------------
Confidence 478999998753 45677766555 88997554444 444432
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTP 369 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~ 369 (754)
.|....++|+|+.|+.+|.++.+.+.++.+
T Consensus 43 --~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 43 --CGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp --HCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred --cCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 122345799999999999999999998754
No 107
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=65.36 E-value=11 Score=44.78 Aligned_cols=68 Identities=15% Similarity=0.084 Sum_probs=50.8
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
.++-|++++-.+++..=++..+.-| ||||.. +.+++.++++.
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppG---------TGKT~~-i~~~i~~l~~~---------------------------- 402 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPG---------TGKTVT-SATIVYHLSKI---------------------------- 402 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTT---------SSHHHH-HHHHHHHHHHH----------------------------
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCC---------CCHHHH-HHHHHHHHHhC----------------------------
Confidence 3688999999887754456666554 899865 45677777542
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLT 368 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~ 368 (754)
...+|||++||..+|.++.+.|.++.
T Consensus 403 -----~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 403 -----HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp -----HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred -----CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 02479999999999999999998763
No 108
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=63.59 E-value=31 Score=33.01 Aligned_cols=74 Identities=8% Similarity=0.038 Sum_probs=52.1
Q ss_pred CCcEEEEecchhcHHHHHHHHHhC-----CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-ccc---ccCccccCC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQ-----NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RSH---FYHRYKIRG 688 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~-----~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-rah---ffRr~dIkg 688 (754)
..++||.||+..-...+.+.+++. ++.+..+++..+..+..+ .+..+..+|+|+|- ++. .-..+.+..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999987777776666543 789999999888766543 44567789999993 221 013356777
Q ss_pred CCeEEE
Q 004428 689 IQNLII 694 (754)
Q Consensus 689 V~~VIf 694 (754)
++.||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888885
No 109
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=63.34 E-value=15 Score=43.76 Aligned_cols=67 Identities=12% Similarity=0.007 Sum_probs=50.1
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
.++-|++++-.++...=++..+.-| ||||.. +.+++.++++.
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppG---------TGKT~t-i~~~i~~l~~~---------------------------- 398 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPG---------TGKTVT-SATIVYHLARQ---------------------------- 398 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTT---------SCHHHH-HHHHHHHHHTT----------------------------
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCC---------CCHHHH-HHHHHHHHHHc----------------------------
Confidence 3788999998887755455555554 899875 45777777642
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHh
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L 367 (754)
...+|||++||..+|.++.+.|.+.
T Consensus 399 -----~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 399 -----GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp -----CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred -----CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 1247999999999999999998765
No 110
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=63.23 E-value=15 Score=42.00 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=55.9
Q ss_pred HhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHH--hcCCccEEEEcc
Q 004428 609 VFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWF--FEGKRKMILYTE 676 (754)
Q Consensus 609 iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F--~~G~~~ILL~TE 676 (754)
++|.+.. .+.+||.+|+..=.......|++.++.+..+++.++..++......+ ..|..+||++|-
T Consensus 77 ~lpal~~--~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 77 QLPALCS--DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp HHHHHTS--SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred HHHHHHc--CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 5566543 46899999999888888888888899999999999999998888887 578999999985
No 111
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=62.83 E-value=22 Score=33.23 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=21.1
Q ss_pred CceEEEEccchhHHHHHHHHHHHh
Q 004428 344 RPKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 344 RPkVLIL~PTRelA~qIv~~l~~L 367 (754)
..++||.|+|+..|..+...|.+.
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~ 57 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD 57 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc
Confidence 358999999999999999988765
No 112
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=61.60 E-value=14 Score=45.97 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=52.7
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
.||-|+++|-.- +..+++.|.-| +|||.+-+--++..|...+.
T Consensus 11 ~t~eQ~~~i~~~--~~~~~v~a~AG---------SGKT~vl~~ri~~ll~~~~~-------------------------- 53 (1232)
T 3u4q_A 11 WTDDQWNAIVST--GQDILVAAAAG---------SGKTAVLVERMIRKITAEEN-------------------------- 53 (1232)
T ss_dssp CCHHHHHHHHCC--SSCEEEEECTT---------CCHHHHHHHHHHHHHSCSSS--------------------------
T ss_pred CCHHHHHHHhCC--CCCEEEEecCC---------CcHHHHHHHHHHHHHhcCCC--------------------------
Confidence 589999998764 78888887655 89999888777777754321
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHH
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIR 366 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~ 366 (754)
+...-++|||++|+.+|..+-+.|..
T Consensus 54 ---~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 54 ---PIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp ---CCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred ---CCCccceEEEeccHHHHHHHHHHHHH
Confidence 11223799999999999999888876
No 113
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=61.50 E-value=20 Score=34.47 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.8
Q ss_pred ceEEEEccchhHHHHHHHHHHHh
Q 004428 345 PKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 345 PkVLIL~PTRelA~qIv~~l~~L 367 (754)
+++||.|+|+..|..+.+.|...
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~ 77 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK 77 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHc
Confidence 57999999999999999998775
No 114
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=59.67 E-value=18 Score=39.54 Aligned_cols=68 Identities=10% Similarity=0.127 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHHHhhhhhCC----c-cEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccc
Q 004428 253 GGNDFHSSKQRSFFSLCNSY----R-DILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSA 327 (754)
Q Consensus 253 g~~~~pTpiQ~~~ip~i~~y----~-Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~ 327 (754)
.+.. .|+-|++++-.+... . -++..+.-| ||||. .+.+++.++...
T Consensus 22 ~~~~-Ln~~Q~~av~~~~~~i~~~~~~~li~G~aG---------TGKT~-ll~~~~~~l~~~------------------ 72 (459)
T 3upu_A 22 TFDD-LTEGQKNAFNIVMKAIKEKKHHVTINGPAG---------TGATT-LTKFIIEALIST------------------ 72 (459)
T ss_dssp CSSC-CCHHHHHHHHHHHHHHHSSSCEEEEECCTT---------SCHHH-HHHHHHHHHHHT------------------
T ss_pred cccc-CCHHHHHHHHHHHHHHhcCCCEEEEEeCCC---------CCHHH-HHHHHHHHHHhc------------------
Confidence 3444 478899888876433 3 566666555 89994 445777777532
Q ss_pred ccccccccccccCCCCCceEEEEccchhHHHHHHHHH
Q 004428 328 KEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRL 364 (754)
Q Consensus 328 ~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l 364 (754)
|. .+||+++||..+|..+.+.+
T Consensus 73 -------------~~--~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 73 -------------GE--TGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp -------------TC--CCEEEEESSHHHHHHHHHHH
T ss_pred -------------CC--ceEEEecCcHHHHHHHHhhh
Confidence 11 36999999999887776554
No 115
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=59.47 E-value=43 Score=32.79 Aligned_cols=72 Identities=6% Similarity=-0.046 Sum_probs=51.3
Q ss_pred CCcEEEEecchhcHHHHHHHH----HhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-----cccccCccccCC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFL----KSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-----RSHFYHRYKIRG 688 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~L----k~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-----rahffRr~dIkg 688 (754)
..++||.+|+..-...+.+.+ ...++.+..+++..+.....+.+. . ..+|+|+|= ... ...+.+..
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~-~~~~~~~~ 176 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLE-CGKTNLRR 176 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHH-HTSCCCTT
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHH-cCCCCccc
Confidence 567999999987665554444 456899999999988877665543 2 488999993 221 23456788
Q ss_pred CCeEEE
Q 004428 689 IQNLII 694 (754)
Q Consensus 689 V~~VIf 694 (754)
++.||.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 888886
No 116
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=58.56 E-value=20 Score=41.79 Aligned_cols=33 Identities=9% Similarity=0.193 Sum_probs=29.3
Q ss_pred CCcEEEEecchhcHHHHHHHHHhCCCceEeecC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGD 650 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihe 650 (754)
.+-+.|.+++......|...|.+.||++....+
T Consensus 351 ~~diAIL~R~~~~~~~le~~L~~~gIPy~~~g~ 383 (724)
T 1pjr_A 351 YRDFAVLYRTNAQSRVMEEMLLKANIPYQIVGG 383 (724)
T ss_dssp GGGEEEEESSGGGHHHHHHHHHHTTCCEEEETS
T ss_pred hhheeeeeecchhHHHHHHHHHHcCCCEEEeCC
Confidence 467999999999999999999999999987765
No 117
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=57.74 E-value=29 Score=33.47 Aligned_cols=74 Identities=11% Similarity=0.062 Sum_probs=48.5
Q ss_pred CCCcEEEEecchhcHHHHHHHHHh---CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-cc---cccCccccCCC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKS---QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RS---HFYHRYKIRGI 689 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~---~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-ra---hffRr~dIkgV 689 (754)
...++||.+|+..-...+.+.+++ .++..+.+++..+.....+.+ . ...+|+|+|- ++ ..-+.+.++.+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 456799999999988888888876 478888888877655543332 2 3489999993 21 12235567888
Q ss_pred CeEEE
Q 004428 690 QNLII 694 (754)
Q Consensus 690 ~~VIf 694 (754)
+.||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88886
No 118
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=56.80 E-value=37 Score=32.89 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=47.8
Q ss_pred CCCcEEEEecchhcHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-ccc-c-c--CccccC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKS----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RSH-F-Y--HRYKIR 687 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-rah-f-f--Rr~dIk 687 (754)
...++||.+|+..-...+.+.+++ .++.+..+++..+.....+.+ +..+|+|+|- ++. + . ..+...
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 356899999998777666666654 458889999987765544332 4689999993 221 1 1 135667
Q ss_pred CCCeEEE
Q 004428 688 GIQNLII 694 (754)
Q Consensus 688 gV~~VIf 694 (754)
.++.||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7877775
No 119
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=55.42 E-value=28 Score=32.20 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=20.9
Q ss_pred ceEEEEccchhHHHHHHHHHHHh
Q 004428 345 PKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 345 PkVLIL~PTRelA~qIv~~l~~L 367 (754)
.++||.|+|+..|..+.+.|...
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~ 58 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL 58 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT
T ss_pred CcEEEEECCHHHHHHHHHHHHHc
Confidence 47999999999999999999875
No 120
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=52.74 E-value=29 Score=32.02 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=20.7
Q ss_pred ceEEEEccchhHHHHHHHHHHHh
Q 004428 345 PKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 345 PkVLIL~PTRelA~qIv~~l~~L 367 (754)
.++||.|+|++.|..+.+.|.+.
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~ 53 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRND 53 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCEEEEECCHHHHHHHHHHHHHc
Confidence 57999999999999999998875
No 121
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=50.38 E-value=56 Score=30.57 Aligned_cols=74 Identities=7% Similarity=-0.011 Sum_probs=51.7
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-ccc---ccCccccCCCC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQ--NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RSH---FYHRYKIRGIQ 690 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~--~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-rah---ffRr~dIkgV~ 690 (754)
...++||.+|+..-...+.+.+++. ++.+..+++..+.....+.+. ...+|+|+|- ++. ..+.+.+..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3468999999998888888888764 578888888877655444332 3588999994 211 11345677788
Q ss_pred eEEE
Q 004428 691 NLII 694 (754)
Q Consensus 691 ~VIf 694 (754)
.||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 122
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=50.24 E-value=36 Score=38.79 Aligned_cols=63 Identities=14% Similarity=0.012 Sum_probs=44.4
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
.++-|+.++..++..+-++..+.-| ||||.+ +..++..+. .
T Consensus 190 L~~~Q~~Av~~~~~~~~~~I~G~pG---------TGKTt~-i~~l~~~l~-~---------------------------- 230 (574)
T 3e1s_A 190 LSEEQASVLDQLAGHRLVVLTGGPG---------TGKSTT-TKAVADLAE-S---------------------------- 230 (574)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCTT---------SCHHHH-HHHHHHHHH-H----------------------------
T ss_pred CCHHHHHHHHHHHhCCEEEEEcCCC---------CCHHHH-HHHHHHHHH-h----------------------------
Confidence 4789999999998888787766554 899944 222333221 1
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHH
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRL 364 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l 364 (754)
+| .+||+++||..+|.++.+.+
T Consensus 231 --~g---~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 231 --LG---LEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp --TT---CCEEEEESSHHHHHHHHHHH
T ss_pred --cC---CeEEEecCcHHHHHHhHhhh
Confidence 22 47999999999998877643
No 123
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=49.92 E-value=59 Score=33.47 Aligned_cols=74 Identities=8% Similarity=0.038 Sum_probs=50.7
Q ss_pred CCcEEEEecchhcHHHHHHHHHhC-----CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-ccc---ccCccccCC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQ-----NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RSH---FYHRYKIRG 688 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~-----~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-rah---ffRr~dIkg 688 (754)
..++||.||+..-...+...+++. ++.+..+++..+..+..+ .+..+..+|+|+|- ++. ....+.+..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999988777777766653 789999999888766543 34567789999993 221 012244556
Q ss_pred CCeEEE
Q 004428 689 IQNLII 694 (754)
Q Consensus 689 V~~VIf 694 (754)
++.||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 666664
No 124
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=49.35 E-value=40 Score=31.60 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=20.9
Q ss_pred ceEEEEccchhHHHHHHHHHHHh
Q 004428 345 PKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 345 PkVLIL~PTRelA~qIv~~l~~L 367 (754)
.++||.|+|+..|..+.+.|...
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~ 54 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQ 54 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT
T ss_pred CcEEEEECCHHHHHHHHHHHHhc
Confidence 47999999999999999999875
No 125
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=48.89 E-value=89 Score=31.12 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=50.2
Q ss_pred CCCcEEEEecchhcHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-cc----cccCccccC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKS----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RS----HFYHRYKIR 687 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-ra----hffRr~dIk 687 (754)
...++||.+|+..-+..+.+.|++ .++.+..+.+........+. +..| .+|+|+|- ++ ....++.++
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 356799999999776666555554 57788889998876655443 3344 89999992 11 111245677
Q ss_pred CCCeEEE
Q 004428 688 GIQNLII 694 (754)
Q Consensus 688 gV~~VIf 694 (754)
.++.||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888876
No 126
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=48.70 E-value=40 Score=32.95 Aligned_cols=75 Identities=7% Similarity=0.003 Sum_probs=43.8
Q ss_pred CCCcEEEEecchhcHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc-cccc--c-cCccccCC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKS----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT-ERSH--F-YHRYKIRG 688 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T-Erah--f-fRr~dIkg 688 (754)
...++||.+|+..-+..+.+.+++ .++.+..+++..+... .+..+..+..+|+|+| +++. . -+.+.+..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 346899999998877777766654 3677777777655433 3345567889999999 3321 1 12355677
Q ss_pred CCeEEE
Q 004428 689 IQNLII 694 (754)
Q Consensus 689 V~~VIf 694 (754)
++.||+
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888775
No 127
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=47.43 E-value=96 Score=26.94 Aligned_cols=94 Identities=21% Similarity=0.359 Sum_probs=61.5
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCC
Q 004428 539 TVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQ 618 (754)
Q Consensus 539 TllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~ 618 (754)
.||.-+|-+.-|.++-.+--.||+|+.- |...+ ..|.| .|+..+++ ..
T Consensus 4 vllvistdtniissvqerakhnypgryi---------------------rtats----sqdir------diiksmkd-ng 51 (112)
T 2lnd_A 4 VLLVISTDTNIISSVQERAKHNYPGRYI---------------------RTATS----SQDIR------DIIKSMKD-NG 51 (112)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHSCTTTE---------------------EEECS----HHHHH------HHHHHHTT-CC
T ss_pred EEEEEecCchHHHHHHHHhhcCCCCcee---------------------eeccc----hhhHH------HHHHHHHh-cC
Confidence 4566677777777777777788887621 11111 11322 35444543 44
Q ss_pred CcEEEEec--chhcHHHHHHHHHhCCCceEeecCCCCHHHHH-HHHHHHh
Q 004428 619 GGIMLFLS--SYFEFVRLRNFLKSQNASFCLLGDYTEPSDIS-RARVWFF 665 (754)
Q Consensus 619 ~~tLIFv~--Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~-rar~~F~ 665 (754)
.+.+|||+ |..|.....|--+++|+++..+-. +.+.+.. |.|...+
T Consensus 52 kplvvfvngasqndvnefqneakkegvsydvlks-tdpeeltqrvreflk 100 (112)
T 2lnd_A 52 KPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKS-TDPEELTQRVREFLK 100 (112)
T ss_dssp SCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEEC-CCHHHHHHHHHHHHH
T ss_pred CeEEEEecCcccccHHHHHHHHHhcCcchhhhcc-CCHHHHHHHHHHHHH
Confidence 78999998 678899999999999999998876 5555554 4444443
No 128
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=46.78 E-value=68 Score=32.96 Aligned_cols=73 Identities=8% Similarity=0.064 Sum_probs=47.9
Q ss_pred CCCcEEEEecchhcHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-c---ccccCccccCC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKS----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-R---SHFYHRYKIRG 688 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-r---ahffRr~dIkg 688 (754)
...++||.||+..-...+.+.+++ .++.+..+++..+..+....+. ..+|+|+|- + ....+.+.+..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 356899999998776666665543 5789999999998776554433 467888882 1 11112344556
Q ss_pred CCeEEE
Q 004428 689 IQNLII 694 (754)
Q Consensus 689 V~~VIf 694 (754)
+..||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 666664
No 129
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=45.59 E-value=84 Score=29.38 Aligned_cols=73 Identities=11% Similarity=0.052 Sum_probs=50.1
Q ss_pred CCcEEEEecchhcHHHHHHHHHh----C-CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-ccc--cc-CccccCC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKS----Q-NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RSH--FY-HRYKIRG 688 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~----~-~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-rah--ff-Rr~dIkg 688 (754)
..++||.+|+..-...+.+.+++ . ++.+..+++..+..+..+. ..+..+|+|+|- ++. .. +.+.+.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR----LDDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh----cCCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 45799999998777666666654 2 7888999998887654433 245789999994 321 01 2345677
Q ss_pred CCeEEE
Q 004428 689 IQNLII 694 (754)
Q Consensus 689 V~~VIf 694 (754)
++.||+
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888875
No 130
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=43.23 E-value=32 Score=32.74 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=21.2
Q ss_pred CceEEEEccchhHHHHHHHHHHHh
Q 004428 344 RPKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 344 RPkVLIL~PTRelA~qIv~~l~~L 367 (754)
..++||.|+|+..|..+.+.|...
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~ 69 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE 69 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc
Confidence 357999999999999999998875
No 131
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=42.57 E-value=42 Score=32.62 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=20.3
Q ss_pred eEEEEccchhHHHHHHHHHHHh
Q 004428 346 KVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 346 kVLIL~PTRelA~qIv~~l~~L 367 (754)
++||.|||+..|..+.+.|.+.
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~ 54 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRL 54 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHc
Confidence 7999999999999999998875
No 132
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=41.45 E-value=1.2e+02 Score=31.53 Aligned_cols=72 Identities=10% Similarity=0.025 Sum_probs=48.5
Q ss_pred CcEEEEecchhcHHHHHHHHH----hCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-ccc---ccCccccCCCC
Q 004428 619 GGIMLFLSSYFEFVRLRNFLK----SQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RSH---FYHRYKIRGIQ 690 (754)
Q Consensus 619 ~~tLIFv~Sy~d~vrlrn~Lk----~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-rah---ffRr~dIkgV~ 690 (754)
.++||.+|+..-...+.+.++ ..++..+.+++..+..+..+.+ ....+|+|+|- ++. ....+.+..++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL----ERGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh----hCCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 579999999977766666654 4578899999988877654433 24578999994 221 11234566666
Q ss_pred eEEE
Q 004428 691 NLII 694 (754)
Q Consensus 691 ~VIf 694 (754)
.||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 133
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=40.58 E-value=41 Score=32.14 Aligned_cols=73 Identities=8% Similarity=0.079 Sum_probs=42.9
Q ss_pred CCCcEEEEecchhcHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-ccc---ccCccccCC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKS----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RSH---FYHRYKIRG 688 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-rah---ffRr~dIkg 688 (754)
...++||.+|+..-...+.+.+++ .++.+..+++..+..+..+. +. ..+|+|+|- ++. .-+.+.+..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 346899999998776666665553 57888999998776554432 22 389999994 211 113455677
Q ss_pred CCeEEE
Q 004428 689 IQNLII 694 (754)
Q Consensus 689 V~~VIf 694 (754)
+..||+
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777775
No 134
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=39.74 E-value=1.2e+02 Score=30.59 Aligned_cols=73 Identities=7% Similarity=0.020 Sum_probs=46.4
Q ss_pred CCCcEEEEecchhcHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccc-c---ccCccccCC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKS----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERS-H---FYHRYKIRG 688 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEra-h---ffRr~dIkg 688 (754)
...++||.+|+..-...+.+.+++ .++.+..+++........+... ..+|+|+|--. . .-..+.+..
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCccccc
Confidence 456899999998766666666654 5788899998887665444332 56888888321 1 001234556
Q ss_pred CCeEEE
Q 004428 689 IQNLII 694 (754)
Q Consensus 689 V~~VIf 694 (754)
++.||.
T Consensus 148 ~~~iIi 153 (367)
T 1hv8_A 148 VKYFIL 153 (367)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 666664
No 135
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=38.79 E-value=76 Score=34.50 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=46.4
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
++|-|+..+-.+...+=+++....+ .|||.+.+.=++-+++..
T Consensus 164 L~p~Qk~il~~l~~~R~~vi~~sRq---------~GKT~l~a~~~l~~a~~~---------------------------- 206 (385)
T 2o0j_A 164 LRDYQRDMLKIMSSKRMTVCNLSRQ---------LGKTTVVAIFLAHFVCFN---------------------------- 206 (385)
T ss_dssp CCHHHHHHHHHHHHSSEEEEEECSS---------SCHHHHHHHHHHHHHHSS----------------------------
T ss_pred CCHHHHHHHHhhccCcEEEEEEcCc---------CChhHHHHHHHHHHHHhC----------------------------
Confidence 5899999988765444444443333 467766665555444321
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLT 368 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~ 368 (754)
...+|+++.||++.|..+.+.+..+.
T Consensus 207 -----~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 207 -----KDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp -----SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred -----CCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 13579999999999998888777664
No 136
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=36.92 E-value=79 Score=35.90 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=48.7
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
++|.|+.++-.+...+-+++....+ .|||.+.+.=++-+++..
T Consensus 164 l~p~Q~~i~~~l~~~r~~~i~~~Rq---------~GKS~~~a~~~l~~~~~~---------------------------- 206 (592)
T 3cpe_A 164 LRDYQRDMLKIMSSKRMTVCNLSRQ---------LGKTTVVAIFLAHFVCFN---------------------------- 206 (592)
T ss_dssp CCHHHHHHHHHHHHCSEEEEEECSS---------SCHHHHHHHHHHHHHHTS----------------------------
T ss_pred CCHHHHHHHHhhccccEEEEEEcCc---------cChHHHHHHHHHHHHHhC----------------------------
Confidence 5899999988775555566655544 567776665555455422
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLT 368 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~ 368 (754)
...+++++.||++.|..+.+.+..+.
T Consensus 207 -----~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 207 -----KDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp -----SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred -----CCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 13579999999999999998877664
No 137
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=36.37 E-value=83 Score=30.41 Aligned_cols=73 Identities=11% Similarity=0.058 Sum_probs=50.1
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhC-----CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-cccc---cCccccC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQ-----NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RSHF---YHRYKIR 687 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~-----~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-rahf---fRr~dIk 687 (754)
...++||.+|+..-...+.+.+++. ++.+..+++..+..+..+.+ ...+|+|+|- ++.. -..+.+.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3468999999987777777766652 78889999988876655433 3589999984 2210 1234566
Q ss_pred CCCeEEE
Q 004428 688 GIQNLII 694 (754)
Q Consensus 688 gV~~VIf 694 (754)
.++.||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 7777775
No 138
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=35.66 E-value=65 Score=33.54 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.1
Q ss_pred ceEEEEccchhHHHHHHHHHHHh
Q 004428 345 PKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 345 PkVLIL~PTRelA~qIv~~l~~L 367 (754)
.++||.|||++.|..+.+.|...
T Consensus 29 ~~~LVF~~t~~~~~~l~~~L~~~ 51 (300)
T 3i32_A 29 DRAMVFTRTKAETEEIAQGLLRL 51 (300)
T ss_dssp SSEEEECSSHHHHHHHHHHHHTT
T ss_pred CCEEEEECCHHHHHHHHHHHHhC
Confidence 37999999999999999888764
No 139
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=35.15 E-value=79 Score=38.72 Aligned_cols=74 Identities=4% Similarity=0.033 Sum_probs=53.8
Q ss_pred CCCcEEEEecchhcHHHHHHHHH----hCCC----ceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-ccc-ccCcccc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLK----SQNA----SFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RSH-FYHRYKI 686 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk----~~~~----~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-rah-ffRr~dI 686 (754)
...++||.+|+..-+..+...|+ ..++ .++.++|.++..++.+....+.+ .+|+|+|- ++. ++++ +
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~--L 173 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRE--L 173 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTT--S
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHH--h
Confidence 35689999999976666555554 4577 89999999999988777777777 99999995 221 2222 5
Q ss_pred CCCCeEEE
Q 004428 687 RGIQNLII 694 (754)
Q Consensus 687 kgV~~VIf 694 (754)
..++.||.
T Consensus 174 ~~l~~lVi 181 (1054)
T 1gku_B 174 GHFDFIFV 181 (1054)
T ss_dssp CCCSEEEE
T ss_pred ccCCEEEE
Confidence 56777664
No 140
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=35.08 E-value=93 Score=32.16 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=21.2
Q ss_pred ceEEEEccchhHHHHHHHHHHHh
Q 004428 345 PKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 345 PkVLIL~PTRelA~qIv~~l~~L 367 (754)
.++||.||++..|..+.+.|.+.
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~ 289 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE 289 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC
Confidence 58999999999999999999876
No 141
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=34.89 E-value=93 Score=31.79 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=21.5
Q ss_pred CceEEEEccchhHHHHHHHHHHHh
Q 004428 344 RPKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 344 RPkVLIL~PTRelA~qIv~~l~~L 367 (754)
..++||.|+++..|..+.+.|...
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~ 266 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE 266 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc
Confidence 468999999999999999999875
No 142
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=34.65 E-value=75 Score=26.53 Aligned_cols=59 Identities=10% Similarity=0.092 Sum_probs=37.7
Q ss_pred CcEEEEecch-hcH------HHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHh--cCCccEEEEccc
Q 004428 619 GGIMLFLSSY-FEF------VRLRNFLKSQNASFCLLGDYTEPSDISRARVWFF--EGKRKMILYTER 677 (754)
Q Consensus 619 ~~tLIFv~Sy-~d~------vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~--~G~~~ILL~TEr 677 (754)
.++.||..+. -.+ .+++.+|...+++|..+.=..+...+..-+...- ...++.++.-+.
T Consensus 2 ~~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~g~ 69 (93)
T 1t1v_A 2 SGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNH 69 (93)
T ss_dssp CCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTE
T ss_pred CCEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEECCE
Confidence 4567776653 334 6999999999999988766666554444333332 116777766554
No 143
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=34.27 E-value=1.3e+02 Score=31.32 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=40.5
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhC-CC---ceEeecCCCCHHHHHHHHHHHhcCCccEEEEc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQ-NA---SFCLLGDYTEPSDISRARVWFFEGKRKMILYT 675 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~-~~---~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T 675 (754)
...++||.||+..-...+.+.|++. ++ .+..+|+.....++..... ..+|+|+|
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T 108 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVAT 108 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEEC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEec
Confidence 4679999999987777777777654 55 8999999998887654332 35788877
No 144
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=33.87 E-value=52 Score=35.57 Aligned_cols=54 Identities=11% Similarity=0.244 Sum_probs=36.9
Q ss_pred CCcEEEEecchhcHHH----HHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc
Q 004428 618 QGGIMLFLSSYFEFVR----LRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT 675 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vr----lrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T 675 (754)
..++||.||+..-... ++.++...++.++.++|..+.....+.+. +..+|+|+|
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T 109 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILT 109 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEEC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEEC
Confidence 6789999999755444 44444455999999999996655432221 236777777
No 145
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=33.13 E-value=1.3e+02 Score=29.40 Aligned_cols=72 Identities=6% Similarity=0.033 Sum_probs=48.4
Q ss_pred CcEEEEecchhcHHHHHHHHH----hCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-cccc---cCccccCCCC
Q 004428 619 GGIMLFLSSYFEFVRLRNFLK----SQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RSHF---YHRYKIRGIQ 690 (754)
Q Consensus 619 ~~tLIFv~Sy~d~vrlrn~Lk----~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-rahf---fRr~dIkgV~ 690 (754)
.++||.+|+..-...+.+.++ ..++.++.+++..+..+..+.+ ....+|+|+|- ++.- -..+.+..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 589999999876666555554 4578888888888766544432 35689999994 3321 1234667788
Q ss_pred eEEE
Q 004428 691 NLII 694 (754)
Q Consensus 691 ~VIf 694 (754)
.||+
T Consensus 177 ~lVi 180 (253)
T 1wrb_A 177 YIVL 180 (253)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 146
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=32.50 E-value=68 Score=37.12 Aligned_cols=25 Identities=16% Similarity=0.289 Sum_probs=23.0
Q ss_pred EEEEccchhHHHHHHHHHHHhCCcc
Q 004428 347 VLILLPLKSIALNVVKRLIRLTPDA 371 (754)
Q Consensus 347 VLIL~PTRelA~qIv~~l~~L~~~~ 371 (754)
+|||+|+..+|.|+.+.|..+.+..
T Consensus 60 ~lvv~~~~~~A~~l~~el~~~~~~~ 84 (661)
T 2d7d_A 60 TLVIAHNKTLAGQLYSEFKEFFPNN 84 (661)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCTTS
T ss_pred EEEEECCHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999997653
No 147
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=32.48 E-value=1e+02 Score=26.80 Aligned_cols=61 Identities=10% Similarity=-0.052 Sum_probs=40.1
Q ss_pred CCCcEEEEecc------hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 004428 617 IQGGIMLFLSS------YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTER 677 (754)
Q Consensus 617 ~~~~tLIFv~S------y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEr 677 (754)
...+++||..+ +--+.+++.+|...++.|..+.=......+..-....-...++.+..-+.
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi~g~ 82 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYIGGE 82 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEETTE
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEECCE
Confidence 35789999874 88899999999999999887654333333333223223345666655444
No 148
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=32.23 E-value=1.6e+02 Score=30.33 Aligned_cols=74 Identities=8% Similarity=-0.006 Sum_probs=48.0
Q ss_pred CCCcEEEEecchhcHHHHHHHHH----hCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-cc---cccCccccCC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLK----SQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RS---HFYHRYKIRG 688 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk----~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-ra---hffRr~dIkg 688 (754)
...++||.+|+..-...+.+.++ ..++.+..+++.....+.... ..+..+|+|+|- ++ ..-+...+.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 34589999999876655555554 447889999998876554332 346789999992 21 0012345666
Q ss_pred CCeEEE
Q 004428 689 IQNLII 694 (754)
Q Consensus 689 V~~VIf 694 (754)
+..||.
T Consensus 164 ~~~vIi 169 (400)
T 1s2m_A 164 CSLFIM 169 (400)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777765
No 149
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=31.97 E-value=1.4e+02 Score=30.85 Aligned_cols=75 Identities=8% Similarity=-0.089 Sum_probs=48.3
Q ss_pred CCCcEEEEecchhcHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccc----ccccCccccCC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKS----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTER----SHFYHRYKIRG 688 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEr----ahffRr~dIkg 688 (754)
...++||.+|+..-...+.+.+++ .++.+..+.+..+.... ......+..+|+|+|-- ....+.+....
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 456899999998776666666654 57788887777665443 34456688899999931 11112244556
Q ss_pred CCeEEE
Q 004428 689 IQNLII 694 (754)
Q Consensus 689 V~~VIf 694 (754)
++.||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 666654
No 150
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=31.26 E-value=1.1e+02 Score=26.82 Aligned_cols=60 Identities=10% Similarity=0.060 Sum_probs=40.5
Q ss_pred CCCcEEEEe------cchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHH-hcCCccEEEEccc
Q 004428 617 IQGGIMLFL------SSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWF-FEGKRKMILYTER 677 (754)
Q Consensus 617 ~~~~tLIFv------~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F-~~G~~~ILL~TEr 677 (754)
...+++||. +.+--+.+++++|...+++|..+.=......+ ..+..+ -...++.+..-+.
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~-~~l~~~~g~~tvP~ifi~g~ 80 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVR-QGLKAYSSWPTYPQLYVSGE 80 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHH-HHHHHHHTCCSSCEEEETTE
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHH-HHHHHHHCCCCCCEEEECCE
Confidence 357899999 67888999999999999998876544443333 333333 2335666665554
No 151
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=31.11 E-value=98 Score=26.38 Aligned_cols=57 Identities=9% Similarity=0.061 Sum_probs=38.2
Q ss_pred CCcEEEEe------cchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEE
Q 004428 618 QGGIMLFL------SSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILY 674 (754)
Q Consensus 618 ~~~tLIFv------~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~ 674 (754)
..+++||. +.+-.+.+++.+|...++.|..+.=......+..-...+-...++.++.
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~i 78 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLYV 78 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEEE
Confidence 45799998 6778999999999999999877765544433333333333345666543
No 152
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=30.65 E-value=1.8e+02 Score=23.54 Aligned_cols=56 Identities=11% Similarity=0.090 Sum_probs=37.0
Q ss_pred CCcEEEEe-cchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEE
Q 004428 618 QGGIMLFL-SSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMIL 673 (754)
Q Consensus 618 ~~~tLIFv-~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL 673 (754)
+..+++|. +..-.+.+++.+|.+.++.|..+.=......+..-+..+-.+.+++++
T Consensus 5 m~~v~ly~~~~C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l~ 61 (92)
T 2khp_A 5 MVDVIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIF 61 (92)
T ss_dssp CCCEEEEECTTCHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHTSSCCCEEE
T ss_pred cccEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 34577776 567889999999999999988776554443333333344445666553
No 153
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=29.75 E-value=77 Score=34.39 Aligned_cols=73 Identities=10% Similarity=0.078 Sum_probs=41.3
Q ss_pred CCcEEEEecchhcHHHHHHHH----HhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-ccc--ccCc-c-ccCC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFL----KSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RSH--FYHR-Y-KIRG 688 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~L----k~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-rah--ffRr-~-dIkg 688 (754)
..++||.+|+..-...+.+.| ...++.+..++|..+.....+.+. ...+|+|+|= ++. ..++ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999986555544444 445999999999986655432221 1367888773 211 0011 2 4556
Q ss_pred CCeEEE
Q 004428 689 IQNLII 694 (754)
Q Consensus 689 V~~VIf 694 (754)
++.||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 666665
No 154
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=29.49 E-value=85 Score=32.19 Aligned_cols=70 Identities=4% Similarity=0.030 Sum_probs=47.9
Q ss_pred CCcEEEEecchhcHHHHHHHHHh-----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-cc-ccc---CccccC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKS-----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RS-HFY---HRYKIR 687 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~-----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-ra-hff---Rr~dIk 687 (754)
..++||.+|++.-+..+.+.++. .++.+..+.+........ ....+|||+|= ++ .+. +.+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 34799999999888877776664 257777777766543221 45678999993 32 111 346788
Q ss_pred CCCeEEE
Q 004428 688 GIQNLII 694 (754)
Q Consensus 688 gV~~VIf 694 (754)
.++.||.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 8999886
No 155
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=28.70 E-value=91 Score=36.49 Aligned_cols=54 Identities=9% Similarity=0.100 Sum_probs=35.2
Q ss_pred CCcEEEEecchhcHHHHHHHH----HhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc
Q 004428 618 QGGIMLFLSSYFEFVRLRNFL----KSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT 675 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~L----k~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T 675 (754)
.+++||.||+..-...+.+.| ...++.++.+||..+...+.+.+. +..+|+|+|
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~T 353 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVT 353 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEEC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEc
Confidence 678999999986655554444 445999999999987665433321 357899988
No 156
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=27.73 E-value=61 Score=32.15 Aligned_cols=52 Identities=21% Similarity=0.347 Sum_probs=38.8
Q ss_pred CceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEE-cCCCCHHHHHHH
Q 004428 481 SSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLL-SYHPNPEINAFF 554 (754)
Q Consensus 481 SSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllF-SAt~~peinsL~ 554 (754)
...++|||||+-..+--.|-.+..|++.|...|. ++.+++ +-..++++..++
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~----------------------~~~vIlTGr~ap~~l~e~A 171 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPG----------------------HQTVIITGRGCHRDILDLA 171 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCT----------------------TCEEEEECSSCCHHHHHHC
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcC----------------------CCEEEEECCCCcHHHHHhC
Confidence 4588999999998876677778888888877665 455555 556667676665
No 157
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=26.95 E-value=1.3e+02 Score=31.08 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=22.7
Q ss_pred cCCceeEEEEecchhhhhcCchHHHHHHHHhccCCC
Q 004428 479 YLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPS 514 (754)
Q Consensus 479 fLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk 514 (754)
+.+.-.++||||||.|-. +-...+++.|...|.
T Consensus 105 ~~~~~kvviIdead~l~~---~a~naLLk~lEep~~ 137 (334)
T 1a5t_A 105 RLGGAKVVWVTDAALLTD---AAANALLKTLEEPPA 137 (334)
T ss_dssp TTSSCEEEEESCGGGBCH---HHHHHHHHHHTSCCT
T ss_pred ccCCcEEEEECchhhcCH---HHHHHHHHHhcCCCC
Confidence 345689999999999853 234456666665554
No 158
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=26.77 E-value=62 Score=30.92 Aligned_cols=73 Identities=7% Similarity=-0.053 Sum_probs=45.9
Q ss_pred CCcEEEEecchhcHHHHHHHHHh----C----CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-ccc---ccCccc
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKS----Q----NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RSH---FYHRYK 685 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~----~----~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-rah---ffRr~d 685 (754)
..++||.+|+..-...+.+.+++ . ++.+..+++..+..+..+. .....+|+|+|- ++. .-+.+.
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK----LNVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC----CSSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH----cCCCCCEEEeCHHHHHHHHHcCCCC
Confidence 46899999998776666665543 2 6888888887754432221 124678999993 211 012345
Q ss_pred cCCCCeEEE
Q 004428 686 IRGIQNLII 694 (754)
Q Consensus 686 IkgV~~VIf 694 (754)
+..++.||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 667777775
No 159
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=26.72 E-value=1.2e+02 Score=30.77 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=41.2
Q ss_pred CcEEEEecchh--------------cHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC
Q 004428 619 GGIMLFLSSYF--------------EFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEG 667 (754)
Q Consensus 619 ~~tLIFv~Sy~--------------d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G 667 (754)
+-+||+.+..| |...|++.|+..|+.+ .++.+.+..++.+++..|..-
T Consensus 17 g~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~~ 78 (250)
T 2j32_A 17 GLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEV-RNKNDLTREEIVELMRDVSKE 78 (250)
T ss_dssp EEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred cEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHHHHHh
Confidence 45788877554 9999999999999985 678899999999999999764
No 160
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=25.14 E-value=2.1e+02 Score=24.40 Aligned_cols=55 Identities=7% Similarity=0.062 Sum_probs=38.0
Q ss_pred CcEEEEec-chhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC--ccEEEE
Q 004428 619 GGIMLFLS-SYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK--RKMILY 674 (754)
Q Consensus 619 ~~tLIFv~-Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~--~~ILL~ 674 (754)
..+.||.. .+-.+.+++++|++.|++|..+.=..+...+...+.. ..|. +++++.
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~-~~G~~tVP~I~i 61 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSV-NGGNRTVPTVKF 61 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHH-SSSSSCSCEEEE
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHH-cCCCCEeCEEEE
Confidence 45777865 4578999999999999999988777666665544332 2342 455544
No 161
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=24.89 E-value=2e+02 Score=24.61 Aligned_cols=57 Identities=9% Similarity=0.051 Sum_probs=37.4
Q ss_pred CCcEEEEec------chhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEE
Q 004428 618 QGGIMLFLS------SYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILY 674 (754)
Q Consensus 618 ~~~tLIFv~------Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~ 674 (754)
..+++||.. .+-.+.+++.+|...++.|..+.=......+..-....-...+++++.
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~ifi 76 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYV 76 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEEC
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 456888876 667899999999999999988776655433332222222234555543
No 162
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=24.14 E-value=2.4e+02 Score=29.14 Aligned_cols=73 Identities=12% Similarity=0.023 Sum_probs=48.0
Q ss_pred CCCcEEEEecchhcHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-----cccccCccccC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKS----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-----RSHFYHRYKIR 687 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-----rahffRr~dIk 687 (754)
...++||.+|+..-...+.+.|++ .++.+..+++.....+..+.+. ...+|+|+|- ... .+.+...
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l~-~~~~~~~ 178 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMIR-RRSLRTR 178 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHH-TTSSCCT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHHH-hCCccHh
Confidence 457899999998777777766654 4688888998888776555432 2458888883 211 1234455
Q ss_pred CCCeEEE
Q 004428 688 GIQNLII 694 (754)
Q Consensus 688 gV~~VIf 694 (754)
.++.||.
T Consensus 179 ~~~~vVi 185 (410)
T 2j0s_A 179 AIKMLVL 185 (410)
T ss_dssp TCCEEEE
T ss_pred heeEEEE
Confidence 5666654
No 163
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=24.08 E-value=98 Score=32.15 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=23.0
Q ss_pred cCCceeEEEEecchhhhhcCchHHHHHHHHhccCCC
Q 004428 479 YLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPS 514 (754)
Q Consensus 479 fLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk 514 (754)
+.+.-.++||||||.|-- +-...+++.|..+|.
T Consensus 79 ~~~~~kvviIdead~lt~---~a~naLLk~LEep~~ 111 (305)
T 2gno_A 79 ELYTRKYVIVHDCERMTQ---QAANAFLKALEEPPE 111 (305)
T ss_dssp SSSSSEEEEETTGGGBCH---HHHHHTHHHHHSCCT
T ss_pred ccCCceEEEeccHHHhCH---HHHHHHHHHHhCCCC
Confidence 456789999999999852 223456666666664
No 164
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=22.66 E-value=2e+02 Score=30.72 Aligned_cols=73 Identities=7% Similarity=0.018 Sum_probs=48.6
Q ss_pred CCcEEEEecchhcHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-ccc-c-cC-ccccCCC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKS----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTE-RSH-F-YH-RYKIRGI 689 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TE-rah-f-fR-r~dIkgV 689 (754)
..++||.+|+..-+..+.+.+++ .++.++.+++..+.....+.+ ....+|+|+|= ++. + .+ .+.+..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 45899999999877777666654 468888999988876654432 24588999982 221 0 01 2345666
Q ss_pred CeEEE
Q 004428 690 QNLII 694 (754)
Q Consensus 690 ~~VIf 694 (754)
+.||.
T Consensus 205 ~~lVl 209 (434)
T 2db3_A 205 RFVVL 209 (434)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 66664
No 165
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=22.52 E-value=1.6e+02 Score=27.05 Aligned_cols=60 Identities=10% Similarity=0.020 Sum_probs=38.3
Q ss_pred CCcEEEEec------chhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 004428 618 QGGIMLFLS------SYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTER 677 (754)
Q Consensus 618 ~~~tLIFv~------Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEr 677 (754)
..+++||.. .+-.+.+++.+|...++.|..+.=......+..-....-.-.++++..-+.
T Consensus 34 ~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~VfI~G~ 99 (135)
T 2wci_A 34 ENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGE 99 (135)
T ss_dssp HCSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTE
T ss_pred cCCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEEECCE
Confidence 357889976 678899999999999999888765544433333222222224555544433
No 166
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=21.07 E-value=1.5e+02 Score=27.07 Aligned_cols=37 Identities=11% Similarity=-0.023 Sum_probs=31.2
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHH
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWF 664 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F 664 (754)
+.++.+++.+|...++.|..+.=.++...|...+...
T Consensus 16 kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 16 KKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhc
Confidence 3445799999999999999988888888888877776
No 167
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=20.97 E-value=77 Score=30.77 Aligned_cols=74 Identities=7% Similarity=-0.051 Sum_probs=46.4
Q ss_pred CCcEEEEecchhcHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc-ccc----c-ccCccccC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKS----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT-ERS----H-FYHRYKIR 687 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T-Era----h-ffRr~dIk 687 (754)
..++||.+|+..-...+.+.+++ .++.+..+++...... .......+..+|+|+| +++ . ....+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 34799999998777777666655 4777777765432211 1112235678999999 222 1 01246788
Q ss_pred CCCeEEE
Q 004428 688 GIQNLII 694 (754)
Q Consensus 688 gV~~VIf 694 (754)
+++.||.
T Consensus 175 ~~~~lVi 181 (245)
T 3dkp_A 175 SVEWLVV 181 (245)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 8888886
No 168
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=20.01 E-value=2.8e+02 Score=24.71 Aligned_cols=59 Identities=7% Similarity=0.023 Sum_probs=39.1
Q ss_pred CCcEEEEecc------hhcHHHHHHHHHhCCCc-eEeecCCCCHHHHHHHHHHH-hcCCccEEEEccc
Q 004428 618 QGGIMLFLSS------YFEFVRLRNFLKSQNAS-FCLLGDYTEPSDISRARVWF-FEGKRKMILYTER 677 (754)
Q Consensus 618 ~~~tLIFv~S------y~d~vrlrn~Lk~~~~~-f~~Ihey~sq~~r~rar~~F-~~G~~~ILL~TEr 677 (754)
..+++||..+ +--+.+++.+|.+.+++ |..+.=......+. .+..+ -...++.+..-+.
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~-~l~~~tg~~tvP~vfI~g~ 85 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQ-GIKDYSNWPTIPQVYLNGE 85 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHH-HHHHHHTCCSSCEEEETTE
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHH-HHHHHhCCCCcCeEEECCE
Confidence 3689999884 88899999999999995 77665444433333 33333 2334666665554
Done!