Query 004430
Match_columns 754
No_of_seqs 386 out of 2238
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 23:19:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 99.9 3.8E-28 8.2E-33 281.2 11.6 422 222-692 115-606 (775)
2 COG0326 HtpG Molecular chapero 99.9 1.7E-23 3.8E-28 237.9 13.2 170 237-416 9-208 (623)
3 PTZ00130 heat shock protein 90 99.9 1.2E-22 2.6E-27 237.8 17.9 198 201-416 41-270 (814)
4 PRK05218 heat shock protein 90 99.9 4.1E-21 8.8E-26 223.0 22.8 308 237-625 8-350 (613)
5 PRK14083 HSP90 family protein; 99.9 8.1E-21 1.8E-25 219.4 20.8 303 237-625 5-330 (601)
6 PTZ00272 heat shock protein 83 99.9 1E-20 2.3E-25 220.9 20.1 169 237-416 7-205 (701)
7 KOG1845 MORC family ATPases [C 99.8 3.6E-22 7.9E-27 231.8 4.3 335 292-694 1-357 (775)
8 KOG0019 Molecular chaperone (H 99.7 2.9E-18 6.2E-23 192.7 10.4 160 248-418 51-236 (656)
9 KOG0020 Endoplasmic reticulum 99.7 5.9E-18 1.3E-22 185.5 8.3 158 249-418 90-282 (785)
10 PF13589 HATPase_c_3: Histidin 99.7 1.2E-17 2.5E-22 159.4 3.3 96 255-355 3-99 (137)
11 PF07496 zf-CW: CW-type Zinc F 99.6 2.9E-16 6.3E-21 126.2 1.3 45 644-688 1-49 (50)
12 PRK00095 mutL DNA mismatch rep 99.4 2.2E-11 4.7E-16 142.5 23.0 138 236-387 3-147 (617)
13 TIGR00585 mutl DNA mismatch re 99.3 1.3E-11 2.8E-16 133.1 12.2 139 236-387 3-148 (312)
14 COG0323 MutL DNA mismatch repa 99.2 2.3E-11 4.9E-16 142.6 11.5 138 236-386 4-148 (638)
15 COG1389 DNA topoisomerase VI, 99.1 2.4E-10 5.2E-15 126.4 10.4 145 242-391 19-183 (538)
16 KOG1979 DNA mismatch repair pr 98.9 3.4E-09 7.3E-14 119.8 9.4 140 235-386 7-152 (694)
17 KOG1978 DNA mismatch repair pr 98.8 1E-08 2.2E-13 118.3 8.5 137 238-386 3-145 (672)
18 PRK14868 DNA topoisomerase VI 98.8 6.3E-08 1.4E-12 114.1 14.5 94 254-353 46-149 (795)
19 PRK04184 DNA topoisomerase VI 98.7 9.9E-08 2.1E-12 109.8 14.3 96 255-353 37-142 (535)
20 TIGR01052 top6b DNA topoisomer 98.6 2.3E-07 4.9E-12 105.9 11.5 97 253-354 27-133 (488)
21 PRK05559 DNA topoisomerase IV 98.4 8.3E-07 1.8E-11 104.6 11.4 122 253-388 36-175 (631)
22 TIGR01055 parE_Gneg DNA topois 98.4 1.2E-06 2.6E-11 103.1 10.4 120 255-388 31-168 (625)
23 PF02518 HATPase_c: Histidine 98.2 9.2E-07 2E-11 80.0 4.3 88 255-350 6-98 (111)
24 PRK05644 gyrB DNA gyrase subun 98.2 8.1E-06 1.8E-10 96.5 12.4 120 255-388 38-173 (638)
25 PRK14939 gyrB DNA gyrase subun 98.2 8.6E-06 1.9E-10 97.5 12.3 119 255-388 38-173 (756)
26 TIGR01059 gyrB DNA gyrase, B s 98.2 9.1E-06 2E-10 96.4 11.8 121 254-388 30-166 (654)
27 PRK14867 DNA topoisomerase VI 98.2 6.7E-06 1.4E-10 96.8 10.5 94 255-353 37-140 (659)
28 smart00433 TOP2c Topoisomerase 98.2 6.4E-06 1.4E-10 96.7 10.3 116 258-388 5-138 (594)
29 KOG1977 DNA mismatch repair pr 98.0 4.4E-06 9.6E-11 96.6 3.8 65 239-311 5-70 (1142)
30 TIGR01058 parE_Gpos DNA topois 97.5 0.00041 9E-09 82.2 10.1 120 255-389 35-172 (637)
31 PLN03237 DNA topoisomerase 2; 97.3 0.00088 1.9E-08 84.6 10.1 86 255-349 78-179 (1465)
32 smart00387 HATPase_c Histidine 97.2 0.00069 1.5E-08 58.4 6.2 73 255-335 6-80 (111)
33 COG3290 CitA Signal transducti 97.2 0.00069 1.5E-08 77.9 7.5 84 254-349 427-518 (537)
34 COG0187 GyrB Type IIA topoisom 97.2 0.00097 2.1E-08 77.8 8.7 121 255-389 37-175 (635)
35 cd00075 HATPase_c Histidine ki 97.2 0.00061 1.3E-08 57.8 5.3 86 256-350 2-93 (103)
36 PRK10604 sensor protein RstB; 97.1 0.0011 2.5E-08 74.2 8.1 89 255-350 320-411 (433)
37 PRK09470 cpxA two-component se 97.1 0.0013 2.9E-08 72.7 8.1 89 255-350 354-445 (461)
38 PRK10364 sensor protein ZraS; 97.0 0.0019 4E-08 72.6 8.0 84 254-350 348-436 (457)
39 PRK09467 envZ osmolarity senso 97.0 0.0022 4.7E-08 70.9 8.2 88 254-350 331-421 (435)
40 PRK09303 adaptive-response sen 96.8 0.0036 7.8E-08 69.3 8.7 90 255-352 273-367 (380)
41 TIGR02938 nifL_nitrog nitrogen 96.8 0.0027 5.9E-08 70.0 7.7 85 255-349 388-481 (494)
42 PHA02569 39 DNA topoisomerase 96.8 0.0038 8.2E-08 73.8 9.2 118 257-389 48-185 (602)
43 TIGR01386 cztS_silS_copS heavy 96.8 0.0035 7.6E-08 69.1 8.4 87 255-348 354-445 (457)
44 COG0642 BaeS Signal transducti 96.8 0.0023 4.9E-08 65.4 6.1 71 253-334 227-298 (336)
45 PRK10755 sensor protein BasS/P 96.8 0.0027 5.8E-08 68.6 6.8 87 254-351 247-338 (356)
46 PRK11086 sensory histidine kin 96.7 0.0047 1E-07 69.9 8.5 82 255-349 434-522 (542)
47 PRK11006 phoR phosphate regulo 96.7 0.0049 1.1E-07 68.7 8.4 89 254-349 317-410 (430)
48 PRK15053 dpiB sensor histidine 96.6 0.0044 9.5E-08 70.9 7.9 85 255-349 433-526 (545)
49 TIGR02966 phoR_proteo phosphat 96.6 0.0074 1.6E-07 63.0 8.7 89 255-350 230-323 (333)
50 PRK11100 sensory histidine kin 96.5 0.0065 1.4E-07 67.2 8.1 89 254-350 368-461 (475)
51 PRK10549 signal transduction h 96.5 0.0072 1.6E-07 67.3 8.4 89 255-350 353-446 (466)
52 TIGR02916 PEP_his_kin putative 96.4 0.0066 1.4E-07 72.3 7.3 83 255-350 580-668 (679)
53 PTZ00109 DNA gyrase subunit b; 96.4 0.011 2.4E-07 72.0 9.1 121 255-389 130-307 (903)
54 PLN03128 DNA topoisomerase 2; 96.2 0.011 2.4E-07 74.2 8.3 122 255-389 53-195 (1135)
55 PTZ00108 DNA topoisomerase 2-l 96.2 0.021 4.6E-07 72.7 10.7 122 255-389 58-203 (1388)
56 PRK11360 sensory histidine kin 96.2 0.012 2.7E-07 66.4 7.8 83 255-350 501-589 (607)
57 PRK10815 sensor protein PhoQ; 96.1 0.011 2.5E-07 67.7 7.2 84 255-349 379-465 (485)
58 PRK15347 two component system 96.0 0.018 3.9E-07 70.1 8.5 86 255-351 514-603 (921)
59 PRK11091 aerobic respiration c 96.0 0.019 4E-07 69.2 8.5 93 255-352 399-495 (779)
60 COG4191 Signal transduction hi 95.8 0.014 3E-07 68.1 5.8 59 254-318 497-559 (603)
61 PRK10337 sensor protein QseC; 95.7 0.02 4.3E-07 63.7 6.9 83 255-349 353-438 (449)
62 PRK13837 two-component VirA-li 95.6 0.024 5.3E-07 69.2 7.7 90 255-351 561-664 (828)
63 TIGR03785 marine_sort_HK prote 95.4 0.039 8.5E-07 66.4 8.2 89 255-350 598-691 (703)
64 TIGR01925 spIIAB anti-sigma F 95.4 0.044 9.5E-07 51.6 6.9 81 254-348 39-124 (137)
65 PRK11466 hybrid sensory histid 95.3 0.043 9.3E-07 67.1 8.3 87 255-352 562-652 (914)
66 PRK09835 sensor kinase CusS; P 95.3 0.037 8.1E-07 61.8 7.2 88 254-349 375-468 (482)
67 TIGR02956 TMAO_torS TMAO reduc 95.2 0.046 1E-06 67.0 8.3 88 255-352 580-673 (968)
68 PRK11073 glnL nitrogen regulat 95.0 0.046 1E-06 58.6 6.4 89 255-350 238-336 (348)
69 PRK10490 sensor protein KdpD; 94.9 0.056 1.2E-06 66.9 7.7 88 255-351 779-871 (895)
70 PRK10547 chemotaxis protein Ch 94.8 0.071 1.5E-06 64.0 8.1 87 257-351 388-512 (670)
71 PRK10841 hybrid sensory kinase 94.8 0.075 1.6E-06 66.0 8.5 89 255-351 563-656 (924)
72 PRK11107 hybrid sensory histid 94.6 0.09 2E-06 64.0 8.5 95 255-352 409-508 (919)
73 PRK10618 phosphotransfer inter 94.1 0.15 3.2E-06 63.4 8.8 93 255-352 566-662 (894)
74 KOG0787 Dehydrogenase kinase [ 94.0 0.13 2.8E-06 57.4 7.1 74 255-334 261-349 (414)
75 COG3850 NarQ Signal transducti 93.8 0.11 2.3E-06 60.4 6.2 76 255-353 482-559 (574)
76 PRK13557 histidine kinase; Pro 93.7 0.2 4.3E-06 56.5 8.2 92 255-351 278-383 (540)
77 PF13581 HATPase_c_2: Histidin 93.5 0.14 3E-06 47.3 5.6 78 254-346 31-113 (125)
78 PRK09959 hybrid sensory histid 93.5 0.2 4.3E-06 63.4 8.6 93 255-351 829-925 (1197)
79 PRK03660 anti-sigma F factor; 93.3 0.26 5.6E-06 46.8 7.1 45 254-304 39-88 (146)
80 TIGR01924 rsbW_low_gc serine-p 93.1 0.19 4.1E-06 49.6 6.0 85 254-348 42-131 (159)
81 PRK04069 serine-protein kinase 93.0 0.16 3.4E-06 50.1 5.2 52 255-312 43-99 (161)
82 COG4585 Signal transduction hi 92.8 0.14 3E-06 56.4 5.2 71 254-350 279-353 (365)
83 COG0643 CheA Chemotaxis protei 92.3 0.37 8E-06 58.5 8.1 101 236-352 422-563 (716)
84 PRK11644 sensory histidine kin 90.8 0.24 5.2E-06 57.3 4.3 45 255-305 411-456 (495)
85 PRK10600 nitrate/nitrite senso 90.3 0.26 5.7E-06 57.4 4.1 47 254-306 469-516 (569)
86 COG2205 KdpD Osmosensitive K+ 89.9 0.59 1.3E-05 56.8 6.6 59 256-318 777-836 (890)
87 PF07744 SPOC: SPOC domain; I 89.5 0.2 4.4E-06 46.3 1.9 45 70-114 66-119 (119)
88 COG3920 Signal transduction hi 89.3 0.39 8.4E-06 50.2 4.0 46 255-305 123-174 (221)
89 COG5002 VicK Signal transducti 88.5 0.51 1.1E-05 52.6 4.4 71 256-334 344-417 (459)
90 COG2972 Predicted signal trans 87.7 0.89 1.9E-05 52.1 5.9 54 254-311 350-407 (456)
91 COG2172 RsbW Anti-sigma regula 87.7 1.1 2.4E-05 44.0 5.7 85 253-351 39-129 (146)
92 PRK13560 hypothetical protein; 87.5 0.57 1.2E-05 55.7 4.4 44 257-305 714-762 (807)
93 COG5000 NtrY Signal transducti 85.8 0.94 2E-05 53.6 4.8 51 256-312 602-661 (712)
94 COG4192 Signal transduction hi 84.3 1.7 3.7E-05 50.0 5.8 60 254-318 564-626 (673)
95 COG4251 Bacteriophytochrome (l 81.3 2.2 4.7E-05 50.8 5.3 70 235-313 620-692 (750)
96 smart00249 PHD PHD zinc finger 80.8 1.4 3E-05 33.3 2.4 33 642-674 10-45 (47)
97 PRK10935 nitrate/nitrite senso 79.1 2.2 4.7E-05 49.1 4.4 46 255-305 472-518 (565)
98 PRK13559 hypothetical protein; 78.9 1.9 4.2E-05 46.6 3.7 47 255-305 268-319 (361)
99 COG4564 Signal transduction hi 74.3 4.2 9E-05 45.3 4.6 63 268-353 374-439 (459)
100 PF00628 PHD: PHD-finger; Int 59.6 2 4.3E-05 34.1 -1.0 34 641-674 9-46 (51)
101 COG3852 NtrB Signal transducti 58.4 14 0.0003 41.1 4.7 58 255-312 242-309 (363)
102 COG3851 UhpB Signal transducti 57.3 13 0.00027 42.2 4.2 46 254-305 410-456 (497)
103 KOG0355 DNA topoisomerase type 44.8 40 0.00086 41.7 6.0 45 255-307 54-102 (842)
104 COG3275 LytS Putative regulato 40.7 25 0.00055 41.1 3.4 57 237-305 445-507 (557)
105 COG2865 Predicted transcriptio 39.2 16 0.00035 42.6 1.7 69 253-335 269-352 (467)
106 TIGR03047 PS_II_psb28 photosys 36.6 16 0.00034 34.6 0.9 17 82-98 84-100 (109)
107 PF03912 Psb28: Psb28 protein; 35.4 14 0.00031 34.9 0.4 15 84-98 86-100 (108)
108 PRK13610 photosystem II reacti 35.1 16 0.00036 34.6 0.7 17 82-98 91-107 (113)
109 PLN00039 photosystem II reacti 34.5 18 0.0004 34.3 0.9 17 82-98 85-101 (111)
110 PRK13612 photosystem II reacti 33.5 20 0.00042 34.2 0.9 17 82-98 87-103 (113)
111 PRK13611 photosystem II reacti 32.8 20 0.00044 33.6 0.9 17 82-98 80-96 (104)
112 PF14501 HATPase_c_5: GHKL dom 32.8 74 0.0016 28.5 4.6 42 254-301 5-51 (100)
113 CHL00128 psbW photosystem II p 32.3 21 0.00045 34.0 0.9 17 82-98 87-103 (113)
114 cd00594 KU Ku-core domain; inc 24.9 78 0.0017 33.6 3.8 67 49-116 87-161 (272)
115 KOG1973 Chromatin remodeling p 24.3 34 0.00074 37.1 1.0 30 644-674 230-263 (274)
116 PF05180 zf-DNL: DNL zinc fing 23.6 36 0.00079 29.6 0.8 23 640-662 23-45 (66)
117 smart00559 Ku78 Ku70 and Ku80 23.1 90 0.002 30.3 3.6 66 50-116 35-109 (140)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=3.8e-28 Score=281.17 Aligned_cols=422 Identities=21% Similarity=0.230 Sum_probs=293.5
Q ss_pred CCceeeecCCCCceeeecCHHHHHHhhccccCCHHHHHHHHHhccccc---CCCccEEEEEecccccCCCCcCEEEEE--
Q 004430 222 EPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA---KATKLEISIESIYFKKAGKDIPMLSII-- 296 (754)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~p~fL~slst~hi~~pf~AIaELIDNA~DA---gAt~V~I~I~~~~~~~~~~~~~~L~I~-- 296 (754)
.+.-+...+.++-.+++++|+|||+++|+| .|.++|++||+|||+|. +|+.+.|. .+ ++.-+.....++|.
T Consensus 115 a~~~~~~~~~G~~~~iivhpkflhsnatsh-k~a~~a~aeLldnalDEi~~~~tf~~vd--~I-~p~~d~~i~a~~v~~~ 190 (775)
T KOG1845|consen 115 AELDVIIGKSGGTLHIIVHPKFLHSNATSH-KWAKGAIAELLDNALDEITNGATFVRVD--YI-NPVMDIFIRALVVQLK 190 (775)
T ss_pred ccccceeccCCceeEEEEehhhhcCCCccc-ccccChhhhhccccccccccccceEEee--ee-cccccccceeEEeecc
Confidence 344446666666799999999999999999 89999999999999998 46665443 21 11112224455555
Q ss_pred ---eCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCceeeeecccccceEEEEEeeCC------CCceeEEEEEec--C
Q 004430 297 ---DDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTAD------SRSIAFLSQSLN--Q 365 (754)
Q Consensus 297 ---DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g------~~sv~~ls~sf~--~ 365 (754)
|||+||.++-+..+|.+|++.+. +-...+||||+||+++.|++|.+++|++|..+ .+++|+++++|. +
T Consensus 191 ~~s~~gg~~~~~~i~~~m~l~~~~k~-e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t 269 (775)
T KOG1845|consen 191 RISDDGGGMKPEVIRKCMSLGYSSKK-EANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKT 269 (775)
T ss_pred ceeccccccCHHHHHHHHHhhhhhhh-hhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeeccc
Confidence 77999999999999999998875 33689999999999999999999999999432 568999999994 5
Q ss_pred CCeeEEEec----cccCCCCc-EEEEEeccccchhhhhhhhh-----hhhcCCCchh--hHHHh-h------hc----cc
Q 004430 366 GKDNLEIPI----VSYYRKGQ-FMELDTVVQSEATAKYNLKS-----IKEFSPFNKY--LIGEK-A------GL----FQ 422 (754)
Q Consensus 366 g~~~i~VPi----~~~~~~Gt-~I~l~l~~~~e~~~~~~L~~-----I~kySpF~s~--pI~e~-~------~~----~~ 422 (754)
+.++++||+ ..++.... +..+..+.. ..|..++.+ +++|+||.+. .+.+. . .. +.
T Consensus 270 ~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~--~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~~~~ 347 (775)
T KOG1845|consen 270 GKRDFIVPMRLIKMDYEKSDQLWQGILYKSG--VDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGHQFN 347 (775)
T ss_pred cCCceeEecchhhhhhhcccccccceeeccc--cccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcchhh
Confidence 788999999 44443211 111112211 224444444 9999999984 22220 0 01 22
Q ss_pred -cCCCCcEEEEEeccCCC---CceeeeccCCCCCCCCCCcCcceeecccccCCCCcccccCcchhhHHHHHhhhhcC--C
Q 004430 423 -DKCTGTQIYIWNLDQWG---SNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLV--P 496 (754)
Q Consensus 423 -~~~~GT~IiI~NLrr~~---~~~ELdF~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~p~~ySLRaYLSiLYL~--P 496 (754)
...+||.+|+|++++|. +-.++||+.+ +++|. ....++++.|.++||+. +
T Consensus 348 ~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~--------~~~i~----------------~~~~~~~~s~~sil~~~~~~ 403 (775)
T KOG1845|consen 348 IMNKPGTDVIIYNLRRWKGDEGILELDFDLD--------PHVIP----------------WTYCHSHLSEASILLLTRRL 403 (775)
T ss_pred hccCCCceeeeechhhhcccccceeeccccC--------ccccc----------------ccchhhhhhcccccchhccc
Confidence 25799999999997663 3478888765 24442 13456889999999974 8
Q ss_pred CeEEEEcCeeecccccccccCceeee--cccccc-------eEEEEEEccccccc-ccccceEEEEEeCeeee----eee
Q 004430 497 RMKIYVQGSLVRSRPLAKSLNKTCVE--TGIIMG-------KSAHLTLGRCQLEW-EQMNCGIFLYWHGRLIE----AYK 562 (754)
Q Consensus 497 rm~I~LnG~kV~~~~i~~~L~~~~v~--~~~~~~-------k~V~It~Gf~k~e~-~~~~~Gi~VY~nnRLIk----~~~ 562 (754)
+|.+.+.|+.+.++.+.....++... .+.... .......||.+... ....+|+.|||.+|||. ++|
T Consensus 404 ~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~~~~ 483 (775)
T KOG1845|consen 404 RFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCRPFV 483 (775)
T ss_pred cchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcchhhccccee
Confidence 99999999999999888766554321 111100 11122445555432 23456999999999999 999
Q ss_pred eccccccCCCCCceEEEEEecCcccccCCCceecccCccCccCchHHHHHHHHHHHHHHHHHhhcccccccccc---cCC
Q 004430 563 RVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKD---GAL 639 (754)
Q Consensus 563 kVg~q~~~~~~grGVIGVve~~~l~~p~~~~~~pthnKQdFe~t~~y~~L~~~L~e~l~eYW~~~~~~~~~~~~---~~~ 639 (754)
|.++. .+..++++++++..++ . +++|++|+|+++-.-..++.+..++++.||...++.+.+... ..+
T Consensus 484 k~~n~--~~s~~~~~~~il~~n~-~-------~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q~~~~~ 553 (775)
T KOG1845|consen 484 KIDNA--TGSLGQAVIPILVGNF-V-------ETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQLQKER 553 (775)
T ss_pred eecCC--Cccccccccceecccc-c-------ccCCCccccccccccccchhhhhhcccccccccccccCccchhhhhhh
Confidence 99985 5579999999999984 3 469999999999999999999999999999999998876521 111
Q ss_pred CC-----CCCceeeCccchhhccCCCCCCCCCCCCCceecCCC---CCCCCCCCcccccCC
Q 004430 640 YK-----PDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP---FEGLCDLPEQKVDAG 692 (754)
Q Consensus 640 ~~-----~~~~WVQCd~C~KWR~Lp~~~~~~~lp~~W~C~mn~---~~~sC~~pEe~~~~~ 692 (754)
+. ....=-||- += ++. ...--..|+|..++ .++.|+-+-...+.+
T Consensus 554 ~~~~~~~Ke~~~~~~~---~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (775)
T KOG1845|consen 554 ESTTTVVKEEKPENNH---LS--SSK---RTQRRKSTGRAISVAVEKFNLRSGPNGRGQID 606 (775)
T ss_pred cccceeecccccccch---hc--chh---ccccccccccccccchhhhccccccCCcCCcc
Confidence 11 011112221 11 111 12334689999998 357776665555444
No 2
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.7e-23 Score=237.85 Aligned_cols=170 Identities=25% Similarity=0.337 Sum_probs=137.3
Q ss_pred eecCHH-HHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCcCEEEEEeCC
Q 004430 237 VRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDG 299 (754)
Q Consensus 237 ~~v~p~-fL~slst~hi~~pf~AIaELIDNA~DAg----------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG 299 (754)
|.++-+ .|+.+..+.|+....+|||||+||.||. ...+.|.|.. +.+..+|+|.|||
T Consensus 9 Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~------Dk~~kTLtI~DNG 82 (623)
T COG0326 9 FQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISF------DKDNKTLTISDNG 82 (623)
T ss_pred hhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEE------cccCCEEEEEeCC
Confidence 444444 5566688889999999999999999992 2356666653 4567899999999
Q ss_pred CCCCHHhHHHhhh-cccCCC--------CC-CCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCee
Q 004430 300 HGMTHQDVVRMTY-FGHKQP--------DA-DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 369 (754)
Q Consensus 300 ~GMt~eeL~~~l~-fG~S~k--------~~-~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~ 369 (754)
+|||++|+++.++ .+.|.. .. ++...||||||||||||| ++++|+|+||+.+..... .|.+ .|.++
T Consensus 83 IGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~~~~~-~W~S--~g~g~ 158 (623)
T COG0326 83 IGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGEDEAY-HWES--DGEGE 158 (623)
T ss_pred CCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheee-eeeeEEEEeccCCCCcce-EEEE--cCCCc
Confidence 9999999999885 333321 11 367899999999999999 999999999999975444 7776 67788
Q ss_pred EEEeccccCCC-CcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHHH
Q 004430 370 LEIPIVSYYRK-GQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (754)
Q Consensus 370 i~VPi~~~~~~-Gt~I~l~l~~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (754)
++|....-+.. ||.|+|+++++. +++.+|.|+. |++||.|+.+||..
T Consensus 159 ytv~~~~~~~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~ 208 (623)
T COG0326 159 YTVEDIDKEPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYI 208 (623)
T ss_pred eEEeeccCCCCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEE
Confidence 88888777774 999999999764 7889999976 99999999999974
No 3
>PTZ00130 heat shock protein 90; Provisional
Probab=99.89 E-value=1.2e-22 Score=237.81 Aligned_cols=198 Identities=23% Similarity=0.320 Sum_probs=149.5
Q ss_pred CCCccccCCCCCcccccCCCCCCceeeecCCCCceeeecCHH-HHHHhhccccCCHHHHHHHHHhcccccCC--------
Q 004430 201 FSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAKA-------- 271 (754)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~p~-fL~slst~hi~~pf~AIaELIDNA~DAgA-------- 271 (754)
-.|.|-.|.-|-+.|++....-. ......|++.-+ .|+-++.+.|+++..||+|||+||+||.+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~-------~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt 113 (814)
T PTZ00130 41 EKEEVKKDRDNIPEIEDGEKPTS-------GIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLS 113 (814)
T ss_pred CcchhhcccccCcccccCCCCCc-------ccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcC
Confidence 34666777777776766543221 122334666554 55666888999999999999999999964
Q ss_pred --------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-cccCCCC---------CCCCCcccccCcee
Q 004430 272 --------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPD---------ADDPNRIGRFGVGF 333 (754)
Q Consensus 272 --------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~---------~~~~~~IGqfGvGf 333 (754)
..+.|.|.. +....+|+|.|||+|||++|+.+.|+ +++|... ..+...||||||||
T Consensus 114 ~~~~~~~~~~~~I~I~~------D~~~~tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGF 187 (814)
T PTZ00130 114 DESVLGEEKKLEIRISA------NKEKNILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGF 187 (814)
T ss_pred CchhcCCCCCceEEEEE------CCCCCEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccch
Confidence 467777763 34567999999999999999998764 5554311 12467999999999
Q ss_pred eeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEecccc---CCCCcEEEEEecccc-chhhhhhhhh-hhhcCC
Q 004430 334 KTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSY---YRKGQFMELDTVVQS-EATAKYNLKS-IKEFSP 408 (754)
Q Consensus 334 KsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i~VPi~~~---~~~Gt~I~l~l~~~~-e~~~~~~L~~-I~kySp 408 (754)
||+|| ++++|.|.||+.+. .++.|.+ .|...+.|...+- ..+||+|+||++++. ++...+.|+. |.+||.
T Consensus 188 YSaFm-VAdkV~V~Trs~~~--~~~~W~s--~g~g~y~I~e~~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~ 262 (814)
T PTZ00130 188 YSAFL-VADKVIVYTKNNND--EQYIWES--TADAKFTIYKDPRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQ 262 (814)
T ss_pred hheee-ecCEEEEEEcCCCC--ceEEEEE--CCCCcEEEEECCCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhc
Confidence 99999 99999999998773 4688887 4555666654332 358999999999765 6888888866 999999
Q ss_pred CchhhHHH
Q 004430 409 FNKYLIGE 416 (754)
Q Consensus 409 F~s~pI~e 416 (754)
|+.+||..
T Consensus 263 fI~~PI~l 270 (814)
T PTZ00130 263 FIQYPIYL 270 (814)
T ss_pred cCCCCEEE
Confidence 99999974
No 4
>PRK05218 heat shock protein 90; Provisional
Probab=99.87 E-value=4.1e-21 Score=222.99 Aligned_cols=308 Identities=20% Similarity=0.242 Sum_probs=192.8
Q ss_pred eecCH-HHHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCcCEEEEEeCC
Q 004430 237 VRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDG 299 (754)
Q Consensus 237 ~~v~p-~fL~slst~hi~~pf~AIaELIDNA~DAg----------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG 299 (754)
|+++- +.|..++.+.|+++..+|+|||+||+||. +....|.|.. +.+...|+|.|||
T Consensus 8 Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~------d~~~~~i~I~DnG 81 (613)
T PRK05218 8 FQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISF------DKEARTLTISDNG 81 (613)
T ss_pred hhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEE------cCCCCeEEEEECC
Confidence 44444 45666788889999999999999999993 3455666543 2345579999999
Q ss_pred CCCCHHhHHHhh-hcccCCCC----------CCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCe
Q 004430 300 HGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD 368 (754)
Q Consensus 300 ~GMt~eeL~~~l-~fG~S~k~----------~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~ 368 (754)
+||+.+|+...+ ..|.|.+. ..+...||+||+||+|+++ ++++|+|.||+.+....++.|.+ +|..
T Consensus 82 ~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~~~~~~~~w~~--~g~~ 158 (613)
T PRK05218 82 IGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFM-VADKVTVITRSAGPAAEAVRWES--DGEG 158 (613)
T ss_pred CCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhh-ccCEEEEEEcCCCCCCceEEEEE--eCCc
Confidence 999999999865 46665321 1246899999999988665 99999999999774456888876 4444
Q ss_pred eEEEeccccCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHHHhhhccccCCCCcEEEEEeccCCCCceeeec
Q 004430 369 NLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEW 446 (754)
Q Consensus 369 ~i~VPi~~~~~~Gt~I~l~l~~~~-e~~~~~~L~~-I~kySpF~s~pI~e~~~~~~~~~~GT~IiI~NLrr~~~~~ELdF 446 (754)
.+.+-...-..+||+|+++++.+. ++.+.+.++. |.+||.|..+||...-.. .....+...+ |
T Consensus 159 ~~~i~~~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~~~~~--~~~in~~~~~-------------w 223 (613)
T PRK05218 159 EYTIEEIEKEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKLEKEE--EETINSASAL-------------W 223 (613)
T ss_pred eeEEeECCCCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEEeccc--ceeecCCccc-------------e
Confidence 555544333468999999998764 5666777765 999999999887521000 0000111111 1
Q ss_pred cCCCCCCCCCCcCcceeecccccCCCCcccccCcchhhHHHHHhhhh---cCCCeEEEEcCee-ecccccccccCceeee
Q 004430 447 DNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIF---LVPRMKIYVQGSL-VRSRPLAKSLNKTCVE 522 (754)
Q Consensus 447 ~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~p~~ySLRaYLSiLY---L~Prm~I~LnG~k-V~~~~i~~~L~~~~v~ 522 (754)
... ..|+. +.-...|..-++ -+|-+.|.++..- +..+-+ .+
T Consensus 224 ~~~--------~~~i~-------------------~~~~~~fy~~~~~~~~~pl~~i~~~~e~~~~~~gl--------l~ 268 (613)
T PRK05218 224 TRS--------KSEIT-------------------DEEYKEFYKHLAHDFDDPLFWIHNNVEGPFEYTGL--------LY 268 (613)
T ss_pred ecC--------Ccccc-------------------HHHHHHHhhhhcccccCCcEEEEcccCCceEEEEE--------EE
Confidence 111 01210 001112222222 2344444432211 111111 00
Q ss_pred cccccceEEEEEEcccccccccccceEEEEEeCeeeeee-eeccccccCCCCCceEEEEEecCcccccCCCceecccCcc
Q 004430 523 TGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAY-KRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQ 601 (754)
Q Consensus 523 ~~~~~~k~V~It~Gf~k~e~~~~~~Gi~VY~nnRLIk~~-~kVg~q~~~~~~grGVIGVve~~~l~~p~~~~~~pthnKQ 601 (754)
.|.. ..+++-. .....|+.+|.|+|+|.-. ..+-|. .-+=|-|||+.+.| | |+-+..
T Consensus 269 iP~~------~~~~~~~---~~~~~~~~lyvn~v~I~d~~~~lLP~-----wl~Fv~GVVDs~dL--p------lnvSRE 326 (613)
T PRK05218 269 IPKK------APFDLFN---RDRKGGLKLYVKRVFIMDDAEELLPE-----YLRFVKGVIDSEDL--P------LNVSRE 326 (613)
T ss_pred eCCC------Cccchhh---hcccccEEEEECcEEeeCchhhhchH-----HHhheEEEeecCCC--C------CccCHH
Confidence 1110 0011110 1246899999999999754 335554 45667889999976 2 367888
Q ss_pred CccCchHHHHHHHHHHHHHHHHHh
Q 004430 602 GFLDCEPYARLEEWLGKVADEYWD 625 (754)
Q Consensus 602 dFe~t~~y~~L~~~L~e~l~eYW~ 625 (754)
.+.++..++++.+.|.+++.++..
T Consensus 327 ~lq~~~~l~~i~~~l~~kv~~~l~ 350 (613)
T PRK05218 327 ILQEDRVVKKIRKAITKKVLDELE 350 (613)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999888887766553
No 5
>PRK14083 HSP90 family protein; Provisional
Probab=99.86 E-value=8.1e-21 Score=219.36 Aligned_cols=303 Identities=16% Similarity=0.173 Sum_probs=196.6
Q ss_pred eecCHH-HHHHhhccccCCHHHHHHHHHhcccccCCC----------ccEEEEEecccccCCCCcCEEEEEeCCCCCCHH
Q 004430 237 VRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (754)
Q Consensus 237 ~~v~p~-fL~slst~hi~~pf~AIaELIDNA~DAgAt----------~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (754)
|+++-+ .|+.++.+.|+++..+|+|||+||+||++. .|.|.+. +.+...|+|.|||+||+.+
T Consensus 5 Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-------d~~~~~l~I~DnGiGmt~e 77 (601)
T PRK14083 5 FQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELT-------DAGGGTLIVEDNGIGLTEE 77 (601)
T ss_pred chHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-------cCCCcEEEEEeCCCCCCHH
Confidence 344433 566678888999999999999999999764 4555541 1246799999999999999
Q ss_pred hHHHhh-hcccCCCCCC-----CCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEecc--cc
Q 004430 306 DVVRMT-YFGHKQPDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV--SY 377 (754)
Q Consensus 306 eL~~~l-~fG~S~k~~~-----~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i~VPi~--~~ 377 (754)
++.+.+ .+|.|.+... +...||+||+||+|++| +|+++.|.||+.+. ..++.|.+..++ .+.+... .-
T Consensus 78 el~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~-vad~v~V~Tr~~~~-~~~~~W~~~~~g--~y~i~~~~~~~ 153 (601)
T PRK14083 78 EVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFL-VADEIVVVSRSAKD-GPAVEWRGKADG--TYSVRKLETER 153 (601)
T ss_pred HHHHHHhhhccchhhhhhhcccccccccccccceEEEEE-ecCEEEEEeccCCC-CceEEEEECCCC--ceEEEeCCCCC
Confidence 999864 6887766431 35789999999998887 99999999999752 567888875444 4555432 33
Q ss_pred CCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHHHhhhccccCCCCcEEEEEeccCCCCceeeeccCCCCCCCC
Q 004430 378 YRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSS 455 (754)
Q Consensus 378 ~~~Gt~I~l~l~~~~-e~~~~~~L~~-I~kySpF~s~pI~e~~~~~~~~~~GT~IiI~NLrr~~~~~ELdF~~d~~~~~~ 455 (754)
..+||+|+++++++. ++..++.++. |.+||.|..+||... |+...|-.. ..-|..+
T Consensus 154 ~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l~---------~~~~~iN~~-------~~lW~~~------ 211 (601)
T PRK14083 154 AEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRVE---------GEKGGVNET-------PPPWTRD------ 211 (601)
T ss_pred CCCCCEEEEEecCchhhhccHHHHHHHHHHHhccCCCCcccC---------CceeeecCC-------CCCccCC------
Confidence 358999999998654 5666667654 999999999999731 111111000 0011111
Q ss_pred CCcCcceeecccccCCCCcccccCcchhhHHHHHhhhhc-CCCeEEEEcCeeecccccccccCceeeecccccceEEEEE
Q 004430 456 FHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFL-VPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLT 534 (754)
Q Consensus 456 ~~~~DI~i~~~~~~~~~~q~~~~~p~~ySLRaYLSiLYL-~Prm~I~LnG~kV~~~~i~~~L~~~~v~~~~~~~k~V~It 534 (754)
+.+|. ..+.-..+|...+|= +|-..|.++-.- ... ..+-..
T Consensus 212 --~~eit-----------------~~~eey~~Fyk~~~~~~Pl~~ih~~~e~---~~~----------------~~~Ly~ 253 (601)
T PRK14083 212 --YPDPE-----------------TRREALLAYGEELLGFTPLDVIPLDVPS---GGL----------------EGVAYV 253 (601)
T ss_pred --ccccC-----------------ccHHHHHHHHHHhcCCCchheeeecccc---hhh----------------eEEEEe
Confidence 11220 011223455555553 465555544221 000 111112
Q ss_pred EcccccccccccceEEEEEeCeeeeee-eeccccccCCCCCceEEEEEecCcccccCCCceecccCccCccCchHHHHHH
Q 004430 535 LGRCQLEWEQMNCGIFLYWHGRLIEAY-KRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLE 613 (754)
Q Consensus 535 ~Gf~k~e~~~~~~Gi~VY~nnRLIk~~-~kVg~q~~~~~~grGVIGVve~~~l~~p~~~~~~pthnKQdFe~t~~y~~L~ 613 (754)
++-.... ....|+-+|+|+=||..- .-+-|. .-+=|=|||+.+.| | ++-+...+.+...++++.
T Consensus 254 iP~~~~~--~~~~~v~LY~~rVfI~d~~~~lLP~-----wl~FvrGVVDS~DL--p------LNvSRE~LQ~~~~l~~ir 318 (601)
T PRK14083 254 LPYAVSP--AARRKHRVYLKRMLLSEEAENLLPD-----WAFFVRCVVNTDEL--R------PTASREALYEDDALAAVR 318 (601)
T ss_pred cCCCCCc--cccCceEEEeeeeEeecchhhhhHH-----HHHHheeeeecCCC--C------CccCHHHHccCHHHHHHH
Confidence 2221111 134699999999999643 335553 44667799999976 2 367777889999999999
Q ss_pred HHHHHHHHHHHh
Q 004430 614 EWLGKVADEYWD 625 (754)
Q Consensus 614 ~~L~e~l~eYW~ 625 (754)
+.|.+++.++..
T Consensus 319 ~~i~kki~~~L~ 330 (601)
T PRK14083 319 EELGEAIRKWLI 330 (601)
T ss_pred HHHHHHHHHHHH
Confidence 888888765543
No 6
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.86 E-value=1e-20 Score=220.90 Aligned_cols=169 Identities=23% Similarity=0.301 Sum_probs=130.1
Q ss_pred eecCHH-HHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCcCEEEEEeCC
Q 004430 237 VRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 299 (754)
Q Consensus 237 ~~v~p~-fL~slst~hi~~pf~AIaELIDNA~DAgA----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG 299 (754)
|+..-+ .|+-+..+.|+++..+|||||+||.||.. ..+.|.|.. +.+...|+|.|||
T Consensus 7 Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~------d~~~~~L~I~DnG 80 (701)
T PTZ00272 7 FQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVP------DKENKTLTVEDNG 80 (701)
T ss_pred cHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEE------cCCCCEEEEEECC
Confidence 444433 45666888899999999999999999942 345666653 3346799999999
Q ss_pred CCCCHHhHHHhhh-cccCCC--------CCCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeE
Q 004430 300 HGMTHQDVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL 370 (754)
Q Consensus 300 ~GMt~eeL~~~l~-fG~S~k--------~~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i 370 (754)
+||+++|+.+.|+ ++.|.. ...+...||||||||+|++| +|++|.|.||+.+. .++.|.+ .+...+
T Consensus 81 iGMt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fm-vad~V~V~Srs~~~--~~~~W~s--~~~g~y 155 (701)
T PTZ00272 81 IGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYL-VADRVTVTSKNNSD--ESYVWES--SAGGTF 155 (701)
T ss_pred CCCCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEE-eccEEEEEEecCCC--ceEEEEE--CCCCcE
Confidence 9999999988764 555422 12246799999999999998 99999999998764 5888988 444556
Q ss_pred EEecc-cc-CCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHHH
Q 004430 371 EIPIV-SY-YRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (754)
Q Consensus 371 ~VPi~-~~-~~~Gt~I~l~l~~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (754)
.|-.. .. ..+||+|+|+++++. ++...+.++. |.+||.|+.+||..
T Consensus 156 ~i~~~~~~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l 205 (701)
T PTZ00272 156 TITSTPESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIEL 205 (701)
T ss_pred EEEeCCCCCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEE
Confidence 65432 22 258999999999875 6788888866 99999999999974
No 7
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=3.6e-22 Score=231.79 Aligned_cols=335 Identities=21% Similarity=0.256 Sum_probs=243.9
Q ss_pred EEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecC--CCee
Q 004430 292 MLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ--GKDN 369 (754)
Q Consensus 292 ~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~--g~~~ 369 (754)
+|++.|||.||+++++..+..|+. ....+|+||+|+|+++|++|+++.++|+....+++++++++|.+ ..+.
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~------~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~~~s~~~~sqt~~e~~~~~~ 74 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAV------GLYGIGDYGNGLKSGSMRIGKDFILFTKKESTMSCLFLSQTFHESEADDA 74 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhcc------cccccccccCcccccccccCcccceeeccccccceeeeeccccccccccc
Confidence 478999999999999999998833 46789999999999999999999999999999999999999964 4567
Q ss_pred EEEeccccCCCCcEEEEEeccccchhhhhhhhhhhhcCCCchhhHHHhhhcccc--CCC-CcEEEEEeccCC-CCceeee
Q 004430 370 LEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQD--KCT-GTQIYIWNLDQW-GSNYCLE 445 (754)
Q Consensus 370 i~VPi~~~~~~Gt~I~l~l~~~~e~~~~~~L~~I~kySpF~s~pI~e~~~~~~~--~~~-GT~IiI~NLrr~-~~~~ELd 445 (754)
+.||+++|+.++..|.. .....++++|+.||+|... ..+.+.++. ... ||.++|.|+++. .+.++++
T Consensus 75 vvvP~~t~~~~~~~~~~-------~k~~~~l~~~~c~sfwKag--~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk 145 (775)
T KOG1845|consen 75 VVVPCPTFNPRTREIVT-------EKFAFSLEAIYCRSFWKAG--DYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHK 145 (775)
T ss_pred ceecccccccccccccc-------cccccccchhhhcCccccc--chhcccccceeccCCceeEEEEehhhhcCCCcccc
Confidence 89999999998876644 1234578899999999973 122233321 234 588888888876 4678889
Q ss_pred ccCCCCCCCCCCcCcceeecccccCCCCcccccCcchhhHHHHHhhhhcCCCeEEEEcCeeecccccccccC--ceeeec
Q 004430 446 WDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLN--KTCVET 523 (754)
Q Consensus 446 F~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~p~~ySLRaYLSiLYL~Prm~I~LnG~kV~~~~i~~~L~--~~~v~~ 523 (754)
|..| ..||+|+++- +.++-. +.|+.++|+.|+|.|++++..|+...+..+-. .+++.+
T Consensus 146 ~a~~--------a~aeLldnal---------DEi~~~---~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~ 205 (775)
T KOG1845|consen 146 WAKG--------AIAELLDNAL---------DEITNG---ATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIR 205 (775)
T ss_pred cccC--------hhhhhccccc---------cccccc---cceEEeeeecccccccceeEEeeccceeccccccCHHHHH
Confidence 8776 4788876531 122222 44599999999999999999999887543321 122111
Q ss_pred c----------cccceEEEEEEcccccccccccceEEEEEeCeeeeeeeeccccccCCCCCceEEEEEecCcccccCCCc
Q 004430 524 G----------IIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGL 593 (754)
Q Consensus 524 ~----------~~~~k~V~It~Gf~k~e~~~~~~Gi~VY~nnRLIk~~~kVg~q~~~~~~grGVIGVve~~~l~~p~~~~ 593 (754)
. +...+..+...||.... ...|..+|+-+|. +...+.++.+.||++..+||..
T Consensus 206 ~~m~l~~~~k~e~~~tv~q~~~gfktst---~rlGa~~i~~~R~---------~~~~~~kstqsiglls~tfL~~----- 268 (775)
T KOG1845|consen 206 KCMSLGYSSKKEANSTVGQYGNGFKTST---MRLGADAIVFSRC---------ESRRGLKSTQSIGLLSYTFLRK----- 268 (775)
T ss_pred HHHHhhhhhhhhhhhhhhhhccccccch---hhhccceeEeehh---------hhhccCCcceeEEEEEEeeecc-----
Confidence 0 11112334456666532 2389999999987 3334567899999999998754
Q ss_pred eecccCccCccCchHHHHHHHHHHHHHHHHHhhccccccccc--ccCCCCCCCceeeCccchhhccCCCCCCCCCCCCCc
Q 004430 594 VWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVK--DGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEW 671 (754)
Q Consensus 594 ~~pthnKQdFe~t~~y~~L~~~L~e~l~eYW~~~~~~~~~~~--~~~~~~~~~~WVQCd~C~KWR~Lp~~~~~~~lp~~W 671 (754)
|+ |+||..+- +|++...+...++|.. +-+.+ +..-..+..... .|+||+..+...+ .++..|
T Consensus 269 ---t~-~~d~iv~~---~~i~~~~e~~~~~~~~----i~~~s~~~~~~n~~i~~~~---~~L~w~p~~~~~~--~l~q~~ 332 (775)
T KOG1845|consen 269 ---TG-KRDFIVPM---RLIKMDYEKSDQLWQG----ILYKSGVDWAVNLEIEVTE---RFLKWSPYSHLLD--LLGQNS 332 (775)
T ss_pred ---cc-CCceeEec---chhhhhhhcccccccc----eeeccccccceeeeeHHHH---HHhhcCccccHHH--Hhhhhh
Confidence 78 99999877 8888888888999865 21111 111111111111 7999999999875 788999
Q ss_pred eecCCCC--CCCCCCCcccccCCce
Q 004430 672 FCYMKPF--EGLCDLPEQKVDAGVV 694 (754)
Q Consensus 672 ~C~mn~~--~~sC~~pEe~~~~~~~ 694 (754)
+|+.++. +..|.++.......++
T Consensus 333 v~~~~~~~ef~~~~~~~~~~g~~~I 357 (775)
T KOG1845|consen 333 VQYSKDFPEFGHQFNIMNKPGTDVI 357 (775)
T ss_pred hhhccccchhcchhhhccCCCceee
Confidence 9999974 6889999987776655
No 8
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.9e-18 Score=192.69 Aligned_cols=160 Identities=28% Similarity=0.362 Sum_probs=126.7
Q ss_pred hccccCCHHHHHHHHHhcccccC--------------CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-
Q 004430 248 GQAHSGWIFGAIAELVDNSRDAK--------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY- 312 (754)
Q Consensus 248 st~hi~~pf~AIaELIDNA~DAg--------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~- 312 (754)
..+.|+.-..+++|||+||.||. ...+.|.|.. +.+...|+|.|+|+|||++||.++++
T Consensus 51 i~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~------nk~~~tlti~DtGIGMTk~dLvnnLGT 124 (656)
T KOG0019|consen 51 AKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKALPELEIRIIT------NKDKRTITIQDTGIGMTKEDLVNNLGT 124 (656)
T ss_pred HHHhhcchHHHHHhhhccccchHHHHHHHhhcCccccccceeEEecc------CCCcceEEEEecCCCcCHHHHHhhhhh
Confidence 55566677899999999999993 2456676653 45688999999999999999999986
Q ss_pred ccc--------CCC-CCCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEeccccCCCCcE
Q 004430 313 FGH--------KQP-DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQF 383 (754)
Q Consensus 313 fG~--------S~k-~~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i~VPi~~~~~~Gt~ 383 (754)
... ..+ ..++..+|||||+|||||++ ++++|.|+||+.+.. ++.|.+ .+...+.|-..+--.+||.
T Consensus 125 IAkSGtK~Fmealkea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~~e--~y~Wes--~~~gs~~v~~~~~~~rGTk 199 (656)
T KOG0019|consen 125 IAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPADE--GLQWTS--NGRGSYEIAEASGLRTGTK 199 (656)
T ss_pred hhhcccHHHHHHHHhcccchhhhhhcccchhhhhh-hhheeEEeeccCCCc--ceeeec--CCCCceEEeeccCccccce
Confidence 222 223 34567899999999999999 999999999999875 677766 3444566655444678999
Q ss_pred EEEEecc-ccchhhhhhhhh-hhhcCCCchhhHHHhh
Q 004430 384 MELDTVV-QSEATAKYNLKS-IKEFSPFNKYLIGEKA 418 (754)
Q Consensus 384 I~l~l~~-~~e~~~~~~L~~-I~kySpF~s~pI~e~~ 418 (754)
|++++++ +.++.++..++. |.+||.|+.+||....
T Consensus 200 i~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~~ 236 (656)
T KOG0019|consen 200 IVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLNG 236 (656)
T ss_pred EEeeehhhhhhhccHhHHHHHHhhccccccccchhhh
Confidence 9999997 457888888866 9999999999998543
No 9
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5.9e-18 Score=185.46 Aligned_cols=158 Identities=23% Similarity=0.339 Sum_probs=120.9
Q ss_pred ccccCCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh
Q 004430 249 QAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 312 (754)
Q Consensus 249 t~hi~~pf~AIaELIDNA~DAgA----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (754)
.+.|++-..+|+|||+||.||-. ..++|.|.. +.....|.|.|.|+||++++|+++++
T Consensus 90 NSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~------Dke~klLhi~DtGiGMT~edLi~NLG 163 (785)
T KOG0020|consen 90 NSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKA------DKEKKLLHITDTGIGMTREDLIKNLG 163 (785)
T ss_pred HHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEee------chhhCeeeEecccCCccHHHHHHhhh
Confidence 34566778999999999999932 456666664 45678999999999999999999986
Q ss_pred -cccCC--------CCCC-----CCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEeccccC
Q 004430 313 -FGHKQ--------PDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYY 378 (754)
Q Consensus 313 -fG~S~--------k~~~-----~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i~VPi~~~~ 378 (754)
+..|. .... ....|||||+|||+|++ +++.|.|+||+++.. .++|.+- ...+.|....|.
T Consensus 164 TIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfL-VAD~vvVtsKhNdD~--QyiWESd---an~FsvseDprg 237 (785)
T KOG0020|consen 164 TIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFL-VADRVVVTSKHNDDS--QYIWESD---ANSFSVSEDPRG 237 (785)
T ss_pred hhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhh-hcceEEEEeccCCcc--ceeeecc---CcceeeecCCCC
Confidence 22221 1111 24799999999999988 999999999998863 3566652 236666555554
Q ss_pred ---CCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHHHhh
Q 004430 379 ---RKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEKA 418 (754)
Q Consensus 379 ---~~Gt~I~l~l~~~~-e~~~~~~L~~-I~kySpF~s~pI~e~~ 418 (754)
.+||.|+++++++. +++++..++. |.+||.|+++||..+.
T Consensus 238 ~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lWs 282 (785)
T KOG0020|consen 238 NTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLWS 282 (785)
T ss_pred CcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeeee
Confidence 58999999999875 6788888865 9999999999998654
No 10
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.68 E-value=1.2e-17 Score=159.39 Aligned_cols=96 Identities=34% Similarity=0.518 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCC-CCCCcccccCcee
Q 004430 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA-DDPNRIGRFGVGF 333 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~-~~~~~IGqfGvGf 333 (754)
+..||+|||+||+||+|++|.|.|... ..+...|.|.|||.||+.++|..++.+|.+.+.. .....+|+||+|+
T Consensus 3 ~~~al~ElI~Ns~DA~a~~I~I~i~~~-----~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~ 77 (137)
T PF13589_consen 3 PEDALRELIDNSIDAGATNIKISIDED-----KKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGL 77 (137)
T ss_dssp CTHHHHHHHHHHHHHHHHHEEEEEEEE-----TTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGC
T ss_pred HHHHHHHHHHHHHHccCCEEEEEEEcC-----CCCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEH
Confidence 478999999999999999999999852 2356899999999999999999999999887641 1367899999999
Q ss_pred eeecccccceEEEEEeeCCCCc
Q 004430 334 KTGAMRLGKDALVLTQTADSRS 355 (754)
Q Consensus 334 KsAsmrLg~~v~V~SK~~g~~s 355 (754)
|.|++.+|+.+.|+|++.+...
T Consensus 78 k~A~~~~~~~~~v~S~~~~~~~ 99 (137)
T PF13589_consen 78 KLAIFSLGDRVEVISKTNGESF 99 (137)
T ss_dssp GGGGGGTEEEEEEEEESTTSSS
T ss_pred HHHHHHhcCEEEEEEEECCCCc
Confidence 9999999999999999998754
No 11
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=99.58 E-value=2.9e-16 Score=126.17 Aligned_cols=45 Identities=44% Similarity=1.005 Sum_probs=31.3
Q ss_pred CceeeCccchhhccCCCCCCC--CCCCCCceecCCCC--CCCCCCCccc
Q 004430 644 QEWVQCNKCRKWRMLDPGFDT--KSLPVEWFCYMKPF--EGLCDLPEQK 688 (754)
Q Consensus 644 ~~WVQCd~C~KWR~Lp~~~~~--~~lp~~W~C~mn~~--~~sC~~pEe~ 688 (754)
+.|||||.|+|||+||.+++. ..+|+.|+|+||++ .++|++|||.
T Consensus 1 ~~WVQCd~C~KWR~lp~~~~~~~~~~~d~W~C~~n~~~~~~sC~~pee~ 49 (50)
T PF07496_consen 1 DYWVQCDSCLKWRRLPEEVDPIREELPDPWYCSMNPDPPFNSCDAPEEI 49 (50)
T ss_dssp -EEEE-TTT--EEEE-CCHHCTSCCSSTT--GGGSS-CCC-STTS--SS
T ss_pred CeEEECCCCCceeeCChhhCcccccCCCeEEcCCCCCCCCCCCCCcccC
Confidence 479999999999999999877 78999999999986 5999999985
No 12
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.40 E-value=2.2e-11 Score=142.54 Aligned_cols=138 Identities=20% Similarity=0.261 Sum_probs=98.1
Q ss_pred eeecCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcc
Q 004430 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFG 314 (754)
Q Consensus 236 ~~~v~p~fL~sl-st~hi~~pf~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG 314 (754)
+..+++..++.+ |...+.+|..+|+|||+||+||||+.|+|.+.. .+...|+|.|||+||+.+++..++...
T Consensus 3 I~~L~~~v~~~IaAgevI~~~~svvkElveNsiDAgat~I~v~i~~-------~g~~~i~V~DnG~Gi~~~~~~~~~~~~ 75 (617)
T PRK00095 3 IQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIEE-------GGLKLIRVRDNGCGISKEDLALALARH 75 (617)
T ss_pred ceECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhCCCCEEEEEEEe-------CCeEEEEEEEcCCCCCHHHHHHHhhcc
Confidence 568899999999 556678999999999999999999999999963 356789999999999999999887644
Q ss_pred cCCCCCC--C---CCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEecccc-CCCCcEEEEE
Q 004430 315 HKQPDAD--D---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSY-YRKGQFMELD 387 (754)
Q Consensus 315 ~S~k~~~--~---~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i~VPi~~~-~~~Gt~I~l~ 387 (754)
.++|-.. + ....|..|.|+.+.+ .++ +++|.||+.+.. .|+ ...|..|.- +..... ...||.|++.
T Consensus 76 ~tsKi~~~~dl~~~~t~GfrGeAL~sI~-~vs-~l~i~s~~~~~~-~~~-~~~~~~G~~---~~~~~~~~~~GT~V~v~ 147 (617)
T PRK00095 76 ATSKIASLDDLEAIRTLGFRGEALPSIA-SVS-RLTLTSRTADAA-EGW-QIVYEGGEI---VEVKPAAHPVGTTIEVR 147 (617)
T ss_pred CCCCCCChhHhhccccCCcchhHHHhhh-hce-EEEEEEecCCCC-ceE-EEEecCCcC---cceecccCCCCCEEEec
Confidence 4444221 2 255677777774433 354 799999987642 232 233544421 111111 2479998874
No 13
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=1.3e-11 Score=133.08 Aligned_cols=139 Identities=19% Similarity=0.253 Sum_probs=96.6
Q ss_pred eeecCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcc
Q 004430 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFG 314 (754)
Q Consensus 236 ~~~v~p~fL~sl-st~hi~~pf~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG 314 (754)
+.++++...+.+ |...+.++..||.|||+||+||+|+.|.|.+.. .+...|.|.|||.||+.+++..++.-+
T Consensus 3 I~~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~~I~i~~~~-------~~~~~i~V~DnG~Gi~~~~l~~~~~~~ 75 (312)
T TIGR00585 3 IKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEE-------GGLKLIEVSDNGSGIDKEDLPLACERH 75 (312)
T ss_pred CeECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHCCCCEEEEEEEe-------CCEEEEEEEecCCCCCHHHHHHHhhCC
Confidence 567899999999 446678999999999999999999999988863 234469999999999999999887544
Q ss_pred cCCCCC-----CCCCcccccCceeeeecccccceEEEEEee-CCCCceeEEEEEecCCCeeEEEeccccCCCCcEEEEE
Q 004430 315 HKQPDA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQT-ADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 387 (754)
Q Consensus 315 ~S~k~~-----~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~-~g~~sv~~ls~sf~~g~~~i~VPi~~~~~~Gt~I~l~ 387 (754)
.+.|.. ......|..|.|+.+. ..++ +++|.||+ .+. ..++.+. . +|. .+.-....-...||.|++.
T Consensus 76 ~tsk~~~~~~~~~~~~~G~rG~al~si-~~~s-~~~i~S~~~~~~-~~~~~~~-~-~g~-~~~~~~~~~~~~GTtV~v~ 148 (312)
T TIGR00585 76 ATSKIQSFEDLERIETLGFRGEALASI-SSVS-RLTITTKTSAAD-GLAWQAL-L-EGG-MIEEIKPAPRPVGTTVEVR 148 (312)
T ss_pred CcCCCCChhHhhcccccCccchHHHHH-HhhC-cEEEEEeecCCC-cceEEEE-E-CCC-cCcccccccCCCccEEEEc
Confidence 433321 1246789999998543 3355 89999998 343 3444443 2 222 1110111223579998774
No 14
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.25 E-value=2.3e-11 Score=142.57 Aligned_cols=138 Identities=22% Similarity=0.312 Sum_probs=97.4
Q ss_pred eeecCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-c
Q 004430 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 313 (754)
Q Consensus 236 ~~~v~p~fL~sl-st~hi~~pf~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-f 313 (754)
+..+++...+.+ |...+..|..+++|||+||+||||++|+|.++ .+|...|.|.|||+||+++|+.-++. +
T Consensus 4 Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAGAt~I~I~ve-------~gG~~~I~V~DNG~Gi~~~Dl~la~~rH 76 (638)
T COG0323 4 IRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVE-------GGGLKLIRVRDNGSGIDKEDLPLALLRH 76 (638)
T ss_pred ceeCCHHHHHHhcccceeecHHHHHHHHHhcccccCCCEEEEEEc-------cCCccEEEEEECCCCCCHHHHHHHHhhh
Confidence 577899999999 55677899999999999999999999999998 46778899999999999999988754 5
Q ss_pred ccCCC-CCCCCCcccccCceeeeec---ccccceEEEEEeeCCCCceeEEEEEecCCCeeE-EEeccccCCCCcEEEE
Q 004430 314 GHKQP-DADDPNRIGRFGVGFKTGA---MRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL-EIPIVSYYRKGQFMEL 386 (754)
Q Consensus 314 G~S~k-~~~~~~~IGqfGvGfKsAs---mrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i-~VPi~~~~~~Gt~I~l 386 (754)
.+|.= ...|...|-.| ||..-+ ++--.+++|.||+.+. . ..|+.+.+|..-. .+. +.-...||+|++
T Consensus 77 aTSKI~~~~DL~~I~Tl--GFRGEAL~SIasVsrlti~Srt~~~-~--~~~~~~~~g~~~~~~~~-p~a~~~GTtVeV 148 (638)
T COG0323 77 ATSKIASLEDLFRIRTL--GFRGEALASIASVSRLTITSRTAEA-S--EGTQIYAEGGGMEVTVK-PAAHPVGTTVEV 148 (638)
T ss_pred ccccCCchhHHHHhhcc--CccHHHHHHHHhhheeEEEeecCCc-C--ceEEEEecCCccccccc-CCCCCCCCEEEe
Confidence 54432 22344455555 787533 3445899999995553 2 2344443433222 221 122234998876
No 15
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.11 E-value=2.4e-10 Score=126.37 Aligned_cols=145 Identities=20% Similarity=0.224 Sum_probs=105.3
Q ss_pred HHHHHh-----hccccCCHHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhh
Q 004430 242 SYLQTL-----GQAHSGWIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 311 (754)
Q Consensus 242 ~fL~sl-----st~hi~~pf~AIaELIDNA~DAgA-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l 311 (754)
.|+.+| -+.-+.++.+.|.|||+||+||.. ..|.|.|+.. +.+...+.|+|||.|++.+.+.+.|
T Consensus 19 EFF~kNk~mlGf~~p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~-----~~d~y~v~veDNGpGIP~e~IPkvF 93 (538)
T COG1389 19 EFFRKNKEMLGFDGPIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERI-----GKDHYKVIVEDNGPGIPEEQIPKVF 93 (538)
T ss_pred HHHHhCHHhcCCCCchhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEec-----CCceEEEEEecCCCCCChhHhHHHH
Confidence 466555 123346788999999999999953 6788888753 4567889999999999999999988
Q ss_pred h-cccCCCCCCCCCcccccCceeeeec----ccccceEEEEEeeCCCCceeEEEEEecC-CCeeEEEeccccC----CCC
Q 004430 312 Y-FGHKQPDADDPNRIGRFGVGFKTGA----MRLGKDALVLTQTADSRSIAFLSQSLNQ-GKDNLEIPIVSYY----RKG 381 (754)
Q Consensus 312 ~-fG~S~k~~~~~~~IGqfGvGfKsAs----mrLg~~v~V~SK~~g~~sv~~ls~sf~~-g~~~i~VPi~~~~----~~G 381 (754)
+ +-++++-....+..||+|+|.+.|. |..|+.+.|+|++.++..+..++...+. .++..+|.-..++ -+|
T Consensus 94 Gk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hG 173 (538)
T COG1389 94 GKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHG 173 (538)
T ss_pred HHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCc
Confidence 6 3333333235788999999997654 5779999999999987666666655443 2334444442232 379
Q ss_pred cEEEEEeccc
Q 004430 382 QFMELDTVVQ 391 (754)
Q Consensus 382 t~I~l~l~~~ 391 (754)
|.|+++++..
T Consensus 174 T~Vel~~~~~ 183 (538)
T COG1389 174 TRVELELKGV 183 (538)
T ss_pred eEEEEEeccc
Confidence 9999998754
No 16
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.91 E-value=3.4e-09 Score=119.83 Aligned_cols=140 Identities=21% Similarity=0.350 Sum_probs=104.2
Q ss_pred eeeecCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhh-h
Q 004430 235 NFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-Y 312 (754)
Q Consensus 235 ~~~~v~p~fL~sl-st~hi~~pf~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l-~ 312 (754)
.+-+++..+++++ +...|..|..||.|||.||+||++|.|.|.+. ++|-..|.|.|||.||.++||.-+. +
T Consensus 7 ~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk-------~GGLKLlQisDnG~GI~reDl~ilCeR 79 (694)
T KOG1979|consen 7 KIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANSTSIDVLVK-------DGGLKLLQISDNGSGIRREDLPILCER 79 (694)
T ss_pred hhhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCCceEEEEEe-------cCCeEEEEEecCCCccchhhhHHHHHH
Confidence 4678999999999 45667899999999999999999999999886 5677888999999999999997654 5
Q ss_pred cccCCCC-CCCCCcccccCceeee---ecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEeccccCCCCcEEEE
Q 004430 313 FGHKQPD-ADDPNRIGRFGVGFKT---GAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMEL 386 (754)
Q Consensus 313 fG~S~k~-~~~~~~IGqfGvGfKs---AsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i~VPi~~~~~~Gt~I~l 386 (754)
|.+|.-. -++...+..| ||.. |+++-..+|+|.||..+.... |-.+|.+|.=. .-|.+.--.+||.|++
T Consensus 80 ftTSKL~kFEDL~~lsTy--GFRGEALASiShVA~VtV~TK~~~~~ca--yrasY~DGkm~-~~pKpcAgk~GT~I~v 152 (694)
T KOG1979|consen 80 FTTSKLTKFEDLFSLSTY--GFRGEALASISHVAHVTVTTKTAEGKCA--YRASYRDGKMI-ATPKPCAGKQGTIITV 152 (694)
T ss_pred hhhhhcchhHHHHhhhhc--CccHHHHhhhhheeEEEEEEeecCceee--eEEEeeccccc-cCCCCccCCCceEEEe
Confidence 7766422 2456677777 5764 667778999999999987432 23344444311 1244444457888876
No 17
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.79 E-value=1e-08 Score=118.27 Aligned_cols=137 Identities=18% Similarity=0.245 Sum_probs=88.1
Q ss_pred ecCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHh-hhccc
Q 004430 238 RADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRM-TYFGH 315 (754)
Q Consensus 238 ~v~p~fL~sl-st~hi~~pf~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~-l~fG~ 315 (754)
+++++..|.+ +.+.+.++..|++|||+||+||||+.|+|.+. +.|...|.|.|||+|++..++.-+ +..-.
T Consensus 3 ~i~~~tvhrI~S~qvI~sl~sAVKELvENSiDAGAT~I~I~~k-------dyG~d~IEV~DNG~GI~~~n~~~l~lkh~T 75 (672)
T KOG1978|consen 3 QIPKDTVHRICSSQVITSLVSAVKELVENSIDAGATAIDIKVK-------DYGSDSIEVSDNGSGISATDFEGLALKHTT 75 (672)
T ss_pred CCChhhhhccccCCeeccHHHHHHHHHhcCcccCCceeeEecC-------CCCcceEEEecCCCCCCccchhhhhhhhhh
Confidence 5778888999 55666789999999999999999999999987 457889999999999999998764 22222
Q ss_pred CC-CCCCCCCcccccCceeeeecc-ccc--ceEEEEEeeCCCCceeEEEEEecCCCeeEEEeccccCCCCcEEEE
Q 004430 316 KQ-PDADDPNRIGRFGVGFKTGAM-RLG--KDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMEL 386 (754)
Q Consensus 316 S~-k~~~~~~~IGqfGvGfKsAsm-rLg--~~v~V~SK~~g~~sv~~ls~sf~~g~~~i~VPi~~~~~~Gt~I~l 386 (754)
|. ..-+| ...-+-.||..-++ +|| .+|+|.|++... .+|..+.--+.| .+.--...-...||+|.+
T Consensus 76 SKi~~f~D--l~~l~T~GFRGEALSsLCa~~dv~I~Trt~~~-~vgt~l~~Dh~G--~I~~k~~~ar~~GTTV~v 145 (672)
T KOG1978|consen 76 SKIVSFAD--LAVLFTLGFRGEALSSLCALGDVMISTRSHSA-KVGTRLVYDHDG--HIIQKKPVARGRGTTVMV 145 (672)
T ss_pred hcccchhh--hhhhhhhhhHHHHHHhhhhccceEEEEeeccC-ccceeEEEccCC--ceeeeccccCCCCCEEEH
Confidence 21 11112 22334457765433 233 688888888732 333333221222 222111122346888764
No 18
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.78 E-value=6.3e-08 Score=114.06 Aligned_cols=94 Identities=24% Similarity=0.315 Sum_probs=69.4
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-cccCCCCCCCCCccc
Q 004430 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAgAt-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~~~~~IG 327 (754)
++..+|.|||+||+||++. .|.|.+.. ......|.|.|||.||+++++.+++. |.++.+........|
T Consensus 46 ~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~------~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG 119 (795)
T PRK14868 46 GLVTAVKEAVDNALDATEEAGILPDIYVEIEE------VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRG 119 (795)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCceEEEEEEE------CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCC
Confidence 4678999999999999865 46666653 22345799999999999999999985 654444222235678
Q ss_pred ccCceeeeecc----cccceEEEEEeeCCC
Q 004430 328 RFGVGFKTGAM----RLGKDALVLTQTADS 353 (754)
Q Consensus 328 qfGvGfKsAsm----rLg~~v~V~SK~~g~ 353 (754)
+.|+|+.++.. .-|..+.|.|+..+.
T Consensus 120 ~rG~GLglai~~sqlt~GgpI~I~S~~~~~ 149 (795)
T PRK14868 120 QQGIGISAAVLYSQLTSGKPAKITSRTQGS 149 (795)
T ss_pred CCceehHHHHHHHHHcCCCcEEEEeCCCCC
Confidence 89999976542 347789999987664
No 19
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.74 E-value=9.9e-08 Score=109.79 Aligned_cols=96 Identities=25% Similarity=0.393 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-cccCCCCCCCCCcccc
Q 004430 255 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGR 328 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~~~~~IGq 328 (754)
+..+|.|||+||+||.+. .|.|.+.... .+.+...|.|.|||.||+++++..++. |..+.+........|+
T Consensus 37 L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~---~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~ 113 (535)
T PRK04184 37 LYTTVKELVDNSLDACEEAGILPDIKIEIKRVD---EGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQ 113 (535)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEEEcc---CCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCC
Confidence 578999999999999865 4666665310 022356799999999999999999874 4343332111356799
Q ss_pred cCceeeeecc----cccceEEEEEeeCCC
Q 004430 329 FGVGFKTGAM----RLGKDALVLTQTADS 353 (754)
Q Consensus 329 fGvGfKsAsm----rLg~~v~V~SK~~g~ 353 (754)
+|+|+..+.. ..|..+.|.|+..+.
T Consensus 114 ~GLGLsiv~~isq~~~G~~I~V~S~~~~g 142 (535)
T PRK04184 114 QGIGISAAVLYAQMTTGKPVRVISSTGGS 142 (535)
T ss_pred CCcchHHHHHHHHHhcCCcEEEEEecCCC
Confidence 9999976542 235678999987654
No 20
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.59 E-value=2.3e-07 Score=105.87 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-cccCCCCCCCCCcc
Q 004430 253 GWIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRI 326 (754)
Q Consensus 253 ~~pf~AIaELIDNA~DAgAt-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~~~~~I 326 (754)
..+..++.|||+||+||.++ .|.|.+... +.+...|+|.|||.||+.+++..++. |.++.+........
T Consensus 27 ~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~-----g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~ 101 (488)
T TIGR01052 27 RSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI-----GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSR 101 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccC
Confidence 35679999999999999875 567766531 11234799999999999999999875 44444432234567
Q ss_pred cccCceeeeecc----cccceEEEEEeeCCCC
Q 004430 327 GRFGVGFKTGAM----RLGKDALVLTQTADSR 354 (754)
Q Consensus 327 GqfGvGfKsAsm----rLg~~v~V~SK~~g~~ 354 (754)
|.+|+|+.++.+ ..|..+.|.|+..+..
T Consensus 102 G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~ 133 (488)
T TIGR01052 102 GQQGIGISGAVLYSQMTTGKPVKVISSTGGEI 133 (488)
T ss_pred CCccEehhHHHHHHHHcCCceEEEEEecCCce
Confidence 999999975543 3456699999988653
No 21
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.44 E-value=8.3e-07 Score=104.63 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHhccccc----CCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHH--------hhh-cccCCCC
Q 004430 253 GWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPD 319 (754)
Q Consensus 253 ~~pf~AIaELIDNA~DA----gAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-fG~S~k~ 319 (754)
.-+...+.|||+||+|+ .|+.|.|.|.. ...|+|.|||.||+.+.... +|. +..+.|-
T Consensus 36 ~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~---------dg~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf 106 (631)
T PRK05559 36 RGLHHLVQEVIDNSVDEALAGHGKRIEVTLHA---------DGSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKF 106 (631)
T ss_pred chhhhhhhhhhccccchhhcCCCCEEEEEEeC---------CCcEEEEEcCCCCCcccccccCCcchheeeeeccccCcc
Confidence 46788999999999998 78999999873 24899999999999988776 443 1222221
Q ss_pred C--CCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEecc-cc--CCCCcEEEEEe
Q 004430 320 A--DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV-SY--YRKGQFMELDT 388 (754)
Q Consensus 320 ~--~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i~VPi~-~~--~~~Gt~I~l~l 388 (754)
. .-....|..|+|.+++. .++..+.|.|++++.. +.++|..|.-.-.++.. .. ...||.|++.+
T Consensus 107 ~~~~yk~SgGl~GvGls~vN-alS~~l~V~s~r~g~~----~~~~f~~G~~~~~l~~~~~~~~~~~GT~V~f~P 175 (631)
T PRK05559 107 SNKAYKFSGGLHGVGVSVVN-ALSSRLEVEVKRDGKV----YRQRFEGGDPVGPLEVVGTAGKRKTGTRVRFWP 175 (631)
T ss_pred CCccccccCcccccchhhhh-hheeeEEEEEEeCCeE----EEEEEECCcCccCccccccccCCCCCcEEEEEE
Confidence 1 12367899999995544 4889999999987642 45566544221111111 11 45799998755
No 22
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.38 E-value=1.2e-06 Score=103.13 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=81.6
Q ss_pred HHHHHHHHHhcccc---c-CCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHh--------HHHhhh-cccCCCCC-
Q 004430 255 IFGAIAELVDNSRD---A-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPDA- 320 (754)
Q Consensus 255 pf~AIaELIDNA~D---A-gAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-fG~S~k~~- 320 (754)
+...+.||||||+| | +|+.|.|.|.. ...|+|.|||.||+.++ +.-+|+ .-.+.|-.
T Consensus 31 ~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~---------d~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~ 101 (625)
T TIGR01055 31 PNHLVQEVIDNSVDEALAGFASIIMVILHQ---------DQSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSN 101 (625)
T ss_pred cceeehhhhhcccchhhcCCCCEEEEEEeC---------CCeEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCC
Confidence 45689999999999 9 69999999873 26899999999999888 555553 22222211
Q ss_pred -CCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEecc-cc--CCCCcEEEEEe
Q 004430 321 -DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV-SY--YRKGQFMELDT 388 (754)
Q Consensus 321 -~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i~VPi~-~~--~~~Gt~I~l~l 388 (754)
.-....|..|+|+++.. .++..+.|.|++.+.. +.++|..|.-...++.. .. ...||.|++.+
T Consensus 102 ~~~~~SgG~~GvGls~vn-alS~~l~v~~~r~g~~----~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~F~P 168 (625)
T TIGR01055 102 KNYHFSGGLHGVGISVVN-ALSKRVKIKVYRQGKL----YSIAFENGAKVTDLISAGTCGKRLTGTSVHFTP 168 (625)
T ss_pred CcceecCCCcchhHHHHH-HhcCeEEEEEEECCeE----EEEEEECCeEccccccccccCCCCCCeEEEEEE
Confidence 12357888999996544 4899999999988753 55666544321112211 22 23799998754
No 23
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.24 E-value=9.2e-07 Score=80.01 Aligned_cols=88 Identities=20% Similarity=0.320 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004430 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt--~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvG 332 (754)
+..+|.||++||+++... .|.|.+.. ..+...|.|.|||.||+.+++.+++.-+.+.+. +....+.+|+|
T Consensus 6 l~~il~~ll~Na~~~~~~~~~I~i~~~~------~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~--~~~~~~g~GlG 77 (111)
T PF02518_consen 6 LRQILSELLDNAIKHSPEGGKIDITIEE------DDDHLSIEISDNGVGIPPEELEKLFEPFFTSDK--SETSISGHGLG 77 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHTSEEEEEEEE------ETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS--SSGGSSSSSHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEE------ecCeEEEEEEeccccccccccccchhhcccccc--cccccCCCChH
Confidence 567999999999999754 78887775 335788999999999999999998763333222 34556679999
Q ss_pred eeeecc---cccceEEEEEee
Q 004430 333 FKTGAM---RLGKDALVLTQT 350 (754)
Q Consensus 333 fKsAsm---rLg~~v~V~SK~ 350 (754)
|+.+.. .++-++.+.+..
T Consensus 78 L~~~~~~~~~~~g~l~~~~~~ 98 (111)
T PF02518_consen 78 LYIVKQIAERHGGELTIESSE 98 (111)
T ss_dssp HHHHHHHHHHTTEEEEEEEET
T ss_pred HHHHHHHHHHCCCEEEEEEcC
Confidence 975432 345556666653
No 24
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.21 E-value=8.1e-06 Score=96.51 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcccc---cC-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHH--------Hhhhcc-cCCCC--
Q 004430 255 IFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV--------RMTYFG-HKQPD-- 319 (754)
Q Consensus 255 pf~AIaELIDNA~D---Ag-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~--------~~l~fG-~S~k~-- 319 (754)
+...+.|||+||+| || |+.|+|.|.. ...|+|.|||.||+.+.-. .+|..- .+.+-
T Consensus 38 l~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~ 108 (638)
T PRK05644 38 LHHLVYEIVDNSIDEALAGYCDHIEVTINE---------DGSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGG 108 (638)
T ss_pred HHhhhHHhhhcccccccCCCCCEEEEEEeC---------CCcEEEEEeCccccCCccCCCCCCchHHheeeecccCccCC
Confidence 45688999999999 99 9999999973 2389999999999986322 122211 11121
Q ss_pred CCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEec-cccCCCCcEEEEEe
Q 004430 320 ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSYYRKGQFMELDT 388 (754)
Q Consensus 320 ~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i~VPi-~~~~~~Gt~I~l~l 388 (754)
..-....|..|+|.++... ++..++|.|++++. .+.+.|..|.-.-.++. ..-...||.|+..+
T Consensus 109 ~~yk~s~G~~G~Gls~vna-lS~~~~v~t~r~g~----~~~~~~~~G~~~~~~~~~~~~~~~GT~I~F~P 173 (638)
T PRK05644 109 GGYKVSGGLHGVGVSVVNA-LSTWLEVEVKRDGK----IYYQEYERGVPVTPLEVIGETDETGTTVTFKP 173 (638)
T ss_pred CcccccCCccccchhhhhh-eeceEEEEEEeCCc----EEEEEEECCeEccCccccCCcCCCCcEEEEEE
Confidence 1123478999999965544 89999999998775 23455544422111111 11235799998643
No 25
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.20 E-value=8.6e-06 Score=97.47 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcccc---cC-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHH----------hHHHhhhcccCCCCC
Q 004430 255 IFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ----------DVVRMTYFGHKQPDA 320 (754)
Q Consensus 255 pf~AIaELIDNA~D---Ag-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e----------eL~~~l~fG~S~k~~ 320 (754)
+...+.||||||+| || |+.|+|.|.. ...|+|.|||.||+.+ |+.-. ....+.|-.
T Consensus 38 Lhhlv~EivdNaiDE~~AG~a~~I~V~i~~---------dgsIsV~DnGrGIPvd~h~~~g~~~~Elvlt-~lhAggKfd 107 (756)
T PRK14939 38 LHHMVYEVVDNAIDEALAGHCDDITVTIHA---------DGSVSVSDNGRGIPTDIHPEEGVSAAEVIMT-VLHAGGKFD 107 (756)
T ss_pred hhhhhhHhhcccccccccCCCCEEEEEEcC---------CCeEEEEEcCCcccCCcccccCCchhhheee-eecccCCCC
Confidence 45789999999999 99 9999999873 2489999999999987 32211 111122211
Q ss_pred C--CCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEe-ccccCCCCcEEEEEe
Q 004430 321 D--DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IVSYYRKGQFMELDT 388 (754)
Q Consensus 321 ~--~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i~VP-i~~~~~~Gt~I~l~l 388 (754)
. -.-.-|..|+|.++.. .++..+.|.|++++.. +.++|..|.-.-.+. +..-...||.|++.+
T Consensus 108 ~~~ykvSgGlhGvG~svvN-AlS~~l~v~v~r~gk~----~~q~f~~G~~~~~l~~~g~~~~~GT~V~F~P 173 (756)
T PRK14939 108 QNSYKVSGGLHGVGVSVVN-ALSEWLELTIRRDGKI----HEQEFEHGVPVAPLKVVGETDKTGTEVRFWP 173 (756)
T ss_pred CCcccccCCccCccceEee-hccCeEEEEEEeCCeE----EEEEEecCccccCccccCCcCCCCcEEEEEE
Confidence 1 1336789999995544 4899999999987752 556665543111111 111235799988754
No 26
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.18 E-value=9.1e-06 Score=96.41 Aligned_cols=121 Identities=17% Similarity=0.114 Sum_probs=78.0
Q ss_pred CHHHHHHHHHhcccc---cC-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHH--------Hhhhc-ccCCCC-
Q 004430 254 WIFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV--------RMTYF-GHKQPD- 319 (754)
Q Consensus 254 ~pf~AIaELIDNA~D---Ag-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~--------~~l~f-G~S~k~- 319 (754)
-+...+.|||+||+| || |+.|.|.|.. ...|+|.|||.||+.+--. ..+.. ..+.+-
T Consensus 30 gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~kf~ 100 (654)
T TIGR01059 30 GLHHLVYEVVDNSIDEAMAGYCDTINVTIND---------DGSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKFD 100 (654)
T ss_pred hHHhhhHHhhhccccccccCCCCEEEEEEeC---------CCcEEEEEeCCCcCccccCcCCCCchHHheeeecccCccC
Confidence 356789999999999 99 9999999973 2359999999999986211 11221 111221
Q ss_pred -CCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEec-cccCCCCcEEEEEe
Q 004430 320 -ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSYYRKGQFMELDT 388 (754)
Q Consensus 320 -~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i~VPi-~~~~~~Gt~I~l~l 388 (754)
..-....|..|+|+++.. .+++.++|.|++++.. +.++|..|.-.-.+.. ..-...||.|+...
T Consensus 101 ~~~~k~s~G~~G~gl~~in-alS~~l~v~~~~~g~~----~~~~~~~G~~~~~l~~~~~~~~~GT~V~F~p 166 (654)
T TIGR01059 101 KDSYKVSGGLHGVGVSVVN-ALSEWLEVTVFRDGKI----YRQEFERGIPLGPLEVVGETKKTGTTVRFWP 166 (654)
T ss_pred CCcceecCCccchhHHHHH-HhcCeEEEEEEECCeE----EEEEEeCCCcccCceeccCCCCCCcEEEEEE
Confidence 112457899999996554 4899999999987753 4555654432110001 11234799988654
No 27
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.17 E-value=6.7e-06 Score=96.77 Aligned_cols=94 Identities=26% Similarity=0.284 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-cccCCCCCCCCCcccc
Q 004430 255 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGR 328 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~~~~~IGq 328 (754)
+..++.|||+||+||++. .|.|.+... +.+...|.|.|||.||+++++..++. |-.+.|-.......|.
T Consensus 37 L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~-----g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~ 111 (659)
T PRK14867 37 MTTIIHELVTNSLDACEEAEILPDIKVEIEKL-----GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQ 111 (659)
T ss_pred HHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCC
Confidence 448899999999999875 577776531 12234699999999999999999885 3333332112356788
Q ss_pred cCceeeeec----ccccceEEEEEeeCCC
Q 004430 329 FGVGFKTGA----MRLGKDALVLTQTADS 353 (754)
Q Consensus 329 fGvGfKsAs----mrLg~~v~V~SK~~g~ 353 (754)
.|+|+.++. +..|..+.|.|+..+.
T Consensus 112 rG~GLa~a~~vsql~~G~pI~I~S~~g~G 140 (659)
T PRK14867 112 QGIGAAGVLLFSQITTGKPLKITTSTGDG 140 (659)
T ss_pred CcccHHHHHHHHHHhcCCcEEEEEEcCCC
Confidence 999996654 2347778999987554
No 28
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.17 E-value=6.4e-06 Score=96.70 Aligned_cols=116 Identities=20% Similarity=0.240 Sum_probs=74.4
Q ss_pred HHHHHHhcccccC----CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHH--------hhhcc-cCCCC--CCC
Q 004430 258 AIAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTYFG-HKQPD--ADD 322 (754)
Q Consensus 258 AIaELIDNA~DAg----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~fG-~S~k~--~~~ 322 (754)
.+.|||+||+||+ |+.|+|.|+. . ..|+|.|||.||+.+.... ++..- .+.+- ...
T Consensus 5 ~v~ElvdNAiD~~~~g~at~I~V~i~~-------~--g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~ 75 (594)
T smart00433 5 LVDEIVDNAADEALAGYMDTIKVTIDK-------D--NSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAY 75 (594)
T ss_pred EEeeehhcccchhccCCCCEEEEEEeC-------C--CeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCc
Confidence 4789999999997 9999999973 1 3999999999998644321 11111 11121 112
Q ss_pred CCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecC-CCe--eEEEeccccCCCCcEEEEEe
Q 004430 323 PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ-GKD--NLEIPIVSYYRKGQFMELDT 388 (754)
Q Consensus 323 ~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~-g~~--~i~VPi~~~~~~Gt~I~l~l 388 (754)
....|..|+|+++.. .++..++|.|++.+.. +.++|.. |.- ...+ ...-...||.|+..+
T Consensus 76 k~s~G~~G~Gls~vn-alS~~l~v~~~~~g~~----~~~~~~~~G~~~~~~~~-~~~~~~~GT~V~F~P 138 (594)
T smart00433 76 KVSGGLHGVGASVVN-ALSTEFEVEVARDGKE----YKQSFSNNGKPLSEPKI-IGDTKKDGTKVTFKP 138 (594)
T ss_pred cccCCcccchHHHHH-HhcCceEEEEEeCCcE----EEEEEeCCCeECcccee-cCCCCCCCcEEEEEE
Confidence 457899999995544 4889999999998753 4455533 321 1111 111235799988643
No 29
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.97 E-value=4.4e-06 Score=96.56 Aligned_cols=65 Identities=26% Similarity=0.336 Sum_probs=53.2
Q ss_pred cCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhh
Q 004430 239 ADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 311 (754)
Q Consensus 239 v~p~fL~sl-st~hi~~pf~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l 311 (754)
++..+=+++ |...+.++..++.|||-||+||+|+.|.|.+.. ....+.|.|||.||+++||..+-
T Consensus 5 L~~~V~~~lrSg~~~~sla~~VeElv~NSiDA~At~V~v~V~~--------~t~sv~ViDdG~G~~rdDl~~lg 70 (1142)
T KOG1977|consen 5 LSVEVQAKLRSGLAISSLAQCVEELVLNSIDAEATCVAVRVNM--------ETFSVQVIDDGFGMGRDDLEKLG 70 (1142)
T ss_pred cchhHHHHHhccchHHHHHHHHHHHHhhccccCceEEEEEecC--------ceeEEEEEecCCCccHHHHHHHH
Confidence 444555666 444556788999999999999999999999875 35789999999999999998753
No 30
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.48 E-value=0.00041 Score=82.23 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=74.4
Q ss_pred HHHHHHHHHhccccc----CCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHH--------hhhc-ccCCCCC-
Q 004430 255 IFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTYF-GHKQPDA- 320 (754)
Q Consensus 255 pf~AIaELIDNA~DA----gAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~f-G~S~k~~- 320 (754)
+...+.|+||||+|- .++.|+|.|.. ...++|.|||.||+.+--.. .|+. -.+.+-.
T Consensus 35 L~hlv~EIvdNavDE~~ag~~~~I~V~i~~---------dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~ 105 (637)
T TIGR01058 35 LHHLVWEIVDNSVDEVLAGYADNITVTLHK---------DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQ 105 (637)
T ss_pred hheehhhhhcchhhhhhcCCCcEEEEEEcC---------CCeEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCC
Confidence 345678999999993 57899998872 35899999999998642110 1111 1111211
Q ss_pred -CCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCC-C--eeEEEeccccCCCCcEEEEEec
Q 004430 321 -DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG-K--DNLEIPIVSYYRKGQFMELDTV 389 (754)
Q Consensus 321 -~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g-~--~~i~VPi~~~~~~Gt~I~l~l~ 389 (754)
.-.-.-|..|+|.+.. =.|+..+.|.++++|. .+.++|..| . ....+. ..-...||.|+..+.
T Consensus 106 ~~ykvSGGlhGvG~svv-NAlS~~~~V~v~r~gk----~~~q~f~~Gg~~~~~l~~~-~~~~~~GT~V~F~PD 172 (637)
T TIGR01058 106 GGYKTAGGLHGVGASVV-NALSSWLEVTVKRDGQ----IYQQRFENGGKIVQSLKKI-GTTKKTGTLVHFHPD 172 (637)
T ss_pred CcccccCCccccccccc-ceeeceEEEEEEECCE----EEEEEEecCCcCcCCcccc-cCCCCCceEEEEEeC
Confidence 1234568999999544 4489999999987774 355666543 2 111111 122357998876553
No 31
>PLN03237 DNA topoisomerase 2; Provisional
Probab=97.28 E-value=0.00088 Score=84.62 Aligned_cols=86 Identities=21% Similarity=0.374 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHH----h--hhccc---CCCCC
Q 004430 255 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR----M--TYFGH---KQPDA 320 (754)
Q Consensus 255 pf~AIaELIDNA~DAg-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~----~--l~fG~---S~k~~ 320 (754)
+.-.+-|+|+||+|-. .+.|+|.|+. ....|+|.|||.||+-+--.. . +-||+ +.+-.
T Consensus 78 L~kifdEIldNAvDe~~r~g~~~~I~V~I~~--------~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFd 149 (1465)
T PLN03237 78 LYKIFDEILVNAADNKQRDPKMDSLRVVIDV--------EQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYD 149 (1465)
T ss_pred hhhhHHHHhhhhHhHHhhcCCCCEEEEEEEc--------CCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCC
Confidence 4567899999999963 4788888873 246899999999998652110 0 11222 22211
Q ss_pred --CCCCcccccCceeeeecccccceEEEEEe
Q 004430 321 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQ 349 (754)
Q Consensus 321 --~~~~~IGqfGvGfKsAsmrLg~~v~V~SK 349 (754)
.-.-.-|+.|+|.+.+- .|+..+.|.++
T Consensus 150 d~~yKvSGGlhGVGasvvN-aLS~~f~Vev~ 179 (1465)
T PLN03237 150 DNEKKTTGGRNGYGAKLTN-IFSTEFVIETA 179 (1465)
T ss_pred CCcceeeccccccCccccc-cccCeeEEEEE
Confidence 12457799999995444 48999999997
No 32
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.24 E-value=0.00069 Score=58.44 Aligned_cols=73 Identities=18% Similarity=0.368 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004430 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt--~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvG 332 (754)
+..++.||++||+++... .|.|.+.. ..+...+.|.|+|.||+.+++...+..+.+... .....++.|+|
T Consensus 6 l~~~~~~l~~n~~~~~~~~~~v~i~~~~------~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~--~~~~~~~~g~g 77 (111)
T smart00387 6 LRQVLSNLLDNAIKYTPEGGRITVTLER------DGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG--RSRKIGGTGLG 77 (111)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC--CCCCCCccccc
Confidence 567899999999999875 66666653 334578999999999999999887754433321 22345668889
Q ss_pred eee
Q 004430 333 FKT 335 (754)
Q Consensus 333 fKs 335 (754)
++.
T Consensus 78 l~~ 80 (111)
T smart00387 78 LSI 80 (111)
T ss_pred HHH
Confidence 864
No 33
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.21 E-value=0.00069 Score=77.86 Aligned_cols=84 Identities=21% Similarity=0.310 Sum_probs=66.0
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccc
Q 004430 254 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAgA-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGq 328 (754)
...+.+.-|||||+||-+ ..|++.+.. .++...|.|.|||+||+++....++..|.|.|. -+.
T Consensus 427 ~litIlGNLidNA~eA~~~~~~~k~I~l~i~~------~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~------~~~ 494 (537)
T COG3290 427 DLVTILGNLIDNALEALLAPEENKEIELSLSD------RGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN------TGG 494 (537)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEEEe------cCCEEEEEEeCCCCCCChHHHHHHHhcCccccC------CCC
Confidence 567899999999999966 567777764 456778899999999999999999999999875 234
Q ss_pred cCceeee---ecccccceEEEEEe
Q 004430 329 FGVGFKT---GAMRLGKDALVLTQ 349 (754)
Q Consensus 329 fGvGfKs---AsmrLg~~v~V~SK 349 (754)
-|+|++. ..=++|..+.|.+.
T Consensus 495 rGiGL~Lvkq~V~~~~G~I~~~s~ 518 (537)
T COG3290 495 RGIGLYLVKQLVERLGGSIEVESE 518 (537)
T ss_pred CchhHHHHHHHHHHcCceEEEeeC
Confidence 4888763 23366777777775
No 34
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.00097 Score=77.77 Aligned_cols=121 Identities=20% Similarity=0.212 Sum_probs=78.2
Q ss_pred HHHHHHHHHhccccc----CCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhH--------HHhhh-cccCCCCCC
Q 004430 255 IFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDAD 321 (754)
Q Consensus 255 pf~AIaELIDNA~DA----gAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-fG~S~k~~~ 321 (754)
+...+.|.||||+|. .++.|+|.|.. ...|+|.|||.||+-+-= .-.|. +-...|-..
T Consensus 37 LhHlv~EVvDNsiDEalaG~~~~I~V~l~~---------d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~ 107 (635)
T COG0187 37 LHHLVWEVVDNSIDEALAGYADRIDVTLHE---------DGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDN 107 (635)
T ss_pred ceeeEeEeeechHhHHhhCcCcEEEEEEcC---------CCeEEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCC
Confidence 345688999999997 37899998863 579999999999987652 11222 111112111
Q ss_pred C--CCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCe--eEE-EeccccCCCCcEEEEEec
Q 004430 322 D--PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NLE-IPIVSYYRKGQFMELDTV 389 (754)
Q Consensus 322 ~--~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~--~i~-VPi~~~~~~Gt~I~l~l~ 389 (754)
+ .-.=|..|+|. |+.=.|+..+.|.+++++. .+.+.|..|.- .+. +-...-...||.|...+.
T Consensus 108 ~~YkvSGGLHGVG~-SVVNALS~~l~v~v~r~gk----~y~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~PD 175 (635)
T COG0187 108 DSYKVSGGLHGVGV-SVVNALSTWLEVEVKRDGK----IYRQRFERGVPVTPLEVIGSTDTKKTGTKVRFKPD 175 (635)
T ss_pred CccEeecCCCccce-EEEecccceEEEEEEECCE----EEEEEEeCCCcCCCceecccCCCCCCccEEEEEcC
Confidence 1 34557889998 5555699999999999875 35566654432 121 111233456999877654
No 35
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.19 E-value=0.00061 Score=57.80 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=55.9
Q ss_pred HHHHHHHHhcccccCC---CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004430 256 FGAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 256 f~AIaELIDNA~DAgA---t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvG 332 (754)
..++.||++||+++++ ..|.|.+.. ..+...+.|.|+|.||++..+...+...... ......+..|+|
T Consensus 2 ~~~~~~ll~Na~~~~~~~~~~v~i~~~~------~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~---~~~~~~~~~g~g 72 (103)
T cd00075 2 QQVLLNLLSNAIKHTPEGGGRITISVER------DGDHLEIRVEDNGPGIPEEDLERIFERFSDG---SRSRKGGGTGLG 72 (103)
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---CCCCCCCccccC
Confidence 3689999999999987 455555543 3345678999999999999988876432111 112334567888
Q ss_pred eeeec---ccccceEEEEEee
Q 004430 333 FKTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 333 fKsAs---mrLg~~v~V~SK~ 350 (754)
++.+. .+.+..+.+.+..
T Consensus 73 l~~~~~~~~~~~g~~~~~~~~ 93 (103)
T cd00075 73 LSIVKKLVELHGGRIEVESEP 93 (103)
T ss_pred HHHHHHHHHHcCCEEEEEeCC
Confidence 86432 1244566665543
No 36
>PRK10604 sensor protein RstB; Provisional
Probab=97.12 E-value=0.0011 Score=74.22 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCceee
Q 004430 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGfK 334 (754)
+..++..||+||+.++...|.|.+.. ..+.-.|.|.|||.||+++++.+.+.-.+..... ....-|.+|+|+.
T Consensus 320 l~~vl~NLl~NAik~~~~~I~I~~~~------~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~-~~~~~~g~GLGL~ 392 (433)
T PRK10604 320 MERVLDNLLNNALRYAHSRVRVSLLL------DGNQACLIVEDDGPGIPPEERERVFEPFVRLDPS-RDRATGGCGLGLA 392 (433)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEE------ECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCC-CCCCCCCccchHH
Confidence 55789999999999988888888764 2345679999999999999999987633322111 1223456899985
Q ss_pred ee---cccccceEEEEEee
Q 004430 335 TG---AMRLGKDALVLTQT 350 (754)
Q Consensus 335 sA---smrLg~~v~V~SK~ 350 (754)
-+ .-..|.++.|.+..
T Consensus 393 ivk~i~~~~gG~i~v~s~~ 411 (433)
T PRK10604 393 IVHSIALAMGGSVNCDESE 411 (433)
T ss_pred HHHHHHHHCCCEEEEEecC
Confidence 32 23456667766653
No 37
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.09 E-value=0.0013 Score=72.75 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCceee
Q 004430 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGfK 334 (754)
+..++.+||+||+.++...|.|.+.. ..+.-.|+|.|||.||+++++.+.+.-.++.... .....+.+|+|+.
T Consensus 354 l~~~l~nli~NA~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~-~~~~~~g~GlGL~ 426 (461)
T PRK09470 354 LASALENIVRNALRYSHTKIEVAFSV------DKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEA-RDRESGGTGLGLA 426 (461)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEE------ECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcc-cCCCCCCcchhHH
Confidence 45678999999999988888887764 2345679999999999999999887533322111 1123356789985
Q ss_pred ee---cccccceEEEEEee
Q 004430 335 TG---AMRLGKDALVLTQT 350 (754)
Q Consensus 335 sA---smrLg~~v~V~SK~ 350 (754)
-+ ....+.++.+.|..
T Consensus 427 iv~~~v~~~~G~l~~~s~~ 445 (461)
T PRK09470 427 IVENAIQQHRGWVKAEDSP 445 (461)
T ss_pred HHHHHHHHCCCEEEEEECC
Confidence 32 22356666666543
No 38
>PRK10364 sensor protein ZraS; Provisional
Probab=96.98 E-value=0.0019 Score=72.57 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=58.6
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCc
Q 004430 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAgA--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGv 331 (754)
.+..++..||+||+++.+ ..|.|.+.. ..+.-.|.|.|||.||+++.+.+++.-+.+.+. +..|+
T Consensus 348 ~l~~il~NLl~NA~k~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~-------~g~Gl 414 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIGQHGVISVTASE------SGAGVKISVTDSGKGIAADQLEAIFTPYFTTKA-------EGTGL 414 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEE------eCCeEEEEEEECCCCCCHHHHHHHhCccccCCC-------CCCcc
Confidence 356789999999999843 467776653 234568999999999999999999875555442 23588
Q ss_pred eeeeec---ccccceEEEEEee
Q 004430 332 GFKTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 332 GfKsAs---mrLg~~v~V~SK~ 350 (754)
|+..+- -..|.++.+.+..
T Consensus 415 GL~iv~~~v~~~gG~i~i~s~~ 436 (457)
T PRK10364 415 GLAVVHNIVEQHGGTIQVASQE 436 (457)
T ss_pred cHHHHHHHHHHCCCEEEEEeCC
Confidence 875322 2356666666543
No 39
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.95 E-value=0.0022 Score=70.86 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=59.3
Q ss_pred CHHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCcee
Q 004430 254 WIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGf 333 (754)
.+..++.+||+||+.++...|.|.+.. ..+.-.|+|.|||.||+++++.+++.-++.... ... .+.+|+|+
T Consensus 331 ~l~~il~NLl~NA~k~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~--~~~-~~g~GlGL 401 (435)
T PRK09467 331 AIKRALANLVVNAARYGNGWIKVSSGT------EGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDS--ARG-SSGTGLGL 401 (435)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEEe------cCCEEEEEEEecCCCcCHHHHHHhcCCcccCCC--CCC-CCCeehhH
Confidence 345789999999999998888887764 234467999999999999999988764332211 111 24578887
Q ss_pred eee---cccccceEEEEEee
Q 004430 334 KTG---AMRLGKDALVLTQT 350 (754)
Q Consensus 334 KsA---smrLg~~v~V~SK~ 350 (754)
.-+ .-..|.++.+.+..
T Consensus 402 ~iv~~i~~~~~g~l~i~~~~ 421 (435)
T PRK09467 402 AIVKRIVDQHNGKVELGNSE 421 (435)
T ss_pred HHHHHHHHHCCCEEEEEECC
Confidence 532 11245566665543
No 40
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.84 E-value=0.0036 Score=69.26 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004430 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt--~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvG 332 (754)
+..+|..||+||+.+... .|.|.+... ..+.-.|.|.|||.||+.+++.+++.-..+.+. ....+.+|+|
T Consensus 273 l~qvl~NLl~NAik~~~~~~~I~i~~~~~-----~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~---~~~~~G~GLG 344 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPEGGTITLSMLHR-----TTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR---DEGTEGYGIG 344 (380)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEEec-----CCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC---CCCCCccccc
Confidence 457899999999999764 444443220 223457999999999999999998863333221 1223457888
Q ss_pred eeee---cccccceEEEEEeeCC
Q 004430 333 FKTG---AMRLGKDALVLTQTAD 352 (754)
Q Consensus 333 fKsA---smrLg~~v~V~SK~~g 352 (754)
+..+ .-..|.++.|.|...+
T Consensus 345 L~i~~~iv~~~gG~i~v~s~~~~ 367 (380)
T PRK09303 345 LSVCRRIVRVHYGQIWVDSEPGQ 367 (380)
T ss_pred HHHHHHHHHHcCCEEEEEecCCC
Confidence 8532 2246777777765443
No 41
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.83 E-value=0.0027 Score=70.03 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcccccCCC------ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccc
Q 004430 255 IFGAIAELVDNSRDAKAT------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt------~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGq 328 (754)
+..+|.+|+.||+++.+. .|.|.+.. ..+.-.|+|.|||.||+.+...+.|.-.++.+.. ..+.
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~------~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~----~~~G 457 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTAL------NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG----SRKH 457 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC----CCCC
Confidence 457899999999998533 24444332 3456689999999999999999988643333321 1334
Q ss_pred cCceeeeec---ccccceEEEEEe
Q 004430 329 FGVGFKTGA---MRLGKDALVLTQ 349 (754)
Q Consensus 329 fGvGfKsAs---mrLg~~v~V~SK 349 (754)
-|+|+..+- -..|..+.|.|.
T Consensus 458 ~GlGL~i~~~iv~~~gG~i~~~s~ 481 (494)
T TIGR02938 458 IGMGLSVAQEIVADHGGIIDLDDD 481 (494)
T ss_pred CcccHHHHHHHHHHcCCEEEEEEC
Confidence 578875321 135667766654
No 42
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=96.82 E-value=0.0038 Score=73.84 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=72.7
Q ss_pred HHHHHHHhccccc------C-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHH--h--h-----hccc---CC
Q 004430 257 GAIAELVDNSRDA------K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--M--T-----YFGH---KQ 317 (754)
Q Consensus 257 ~AIaELIDNA~DA------g-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--~--l-----~fG~---S~ 317 (754)
..+.|+||||+|- | ++.|+|.|+ ...++|.|||.||+-+--.. - + -|+. +.
T Consensus 48 hi~~EIldNavDe~~~~~~g~~~~I~V~i~----------dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGg 117 (602)
T PHA02569 48 KIIDEIIDNSVDEAIRTNFKFANKIDVTIK----------NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGS 117 (602)
T ss_pred eeeehhhhhhhhhhhccCCCCCcEEEEEEc----------CCEEEEEECCCcccCCcccccccccccceEEEEEeecccc
Confidence 4577999999995 2 567777764 35899999999997643211 0 1 1221 11
Q ss_pred CC-CCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEeccccCCCCcEEEEEec
Q 004430 318 PD-ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTV 389 (754)
Q Consensus 318 k~-~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i~VPi~~~~~~Gt~I~l~l~ 389 (754)
+- ..-.-.-|..|+|.+ +.=.|+..+.|.++..+. .+.++|..|.....++...-..+||.|+..+.
T Consensus 118 kFd~~ykvSGGlhGVG~s-vvNaLS~~~~V~v~~~~~----~~~q~f~~G~~~~~~~~~~~~~~GT~V~F~PD 185 (602)
T PHA02569 118 NFDDTNRVTGGMNGVGSS-LTNFFSVLFIGETCDGKN----EVTVNCSNGAENISWSTKPGKGKGTSVTFIPD 185 (602)
T ss_pred ccCCcceeeCCcCCccce-eeeccchhhheEEEcCCE----EEEEEecCCcccCCcccCCCCCCccEEEEEEC
Confidence 21 112456789999995 444589999998865553 25667755532222222223357998877653
No 43
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.81 E-value=0.0035 Score=69.08 Aligned_cols=87 Identities=20% Similarity=0.184 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004430 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvG 332 (754)
+..++.+||+||++++. ..|.|.+.. .++...|+|.|||.||+++++.+.+.-+++.+... ...-+..|+|
T Consensus 354 l~~~~~nll~Nai~~~~~~~~I~i~~~~------~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~-~~~~~g~GlG 426 (457)
T TIGR01386 354 FRRAISNLLSNALRHTPDGGTITVRIER------RSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPAR-SNSGEGTGLG 426 (457)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHhccccccCCccc-CCCCCCcccc
Confidence 56789999999999874 456666653 23456799999999999999998875333322111 1123447888
Q ss_pred eeeec---ccccceEEEEE
Q 004430 333 FKTGA---MRLGKDALVLT 348 (754)
Q Consensus 333 fKsAs---mrLg~~v~V~S 348 (754)
++.+. -+.|..+.+.+
T Consensus 427 L~i~~~~~~~~~G~~~~~~ 445 (457)
T TIGR01386 427 LAIVRSIMEAHGGRASAES 445 (457)
T ss_pred HHHHHHHHHHCCCEEEEEe
Confidence 75321 23455555555
No 44
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.77 E-value=0.0023 Score=65.38 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHhcccccCC-CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCc
Q 004430 253 GWIFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (754)
Q Consensus 253 ~~pf~AIaELIDNA~DAgA-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGv 331 (754)
.++..+|..||+||++|.. ..|.|.+.. ..+.-.|.|.|||.||+++.+...+..+.+.+... . ..|+
T Consensus 227 ~~l~~vl~nLi~NAi~~~~~~~i~i~~~~------~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~--~---g~Gl 295 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTPGGEITISVRQ------DDEQVTISVEDTGPGIPEEELERIFEPFFRTDKSR--S---GTGL 295 (336)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEEe------cCCeEEEEEEcCCCCCCHHHHHHhccCeeccCCCC--C---CCCc
Confidence 3566799999999999994 778777764 12246899999999999999888876555444211 1 3566
Q ss_pred eee
Q 004430 332 GFK 334 (754)
Q Consensus 332 GfK 334 (754)
|++
T Consensus 296 GL~ 298 (336)
T COG0642 296 GLA 298 (336)
T ss_pred cHH
Confidence 664
No 45
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.76 E-value=0.0027 Score=68.63 Aligned_cols=87 Identities=14% Similarity=0.225 Sum_probs=59.9
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCc
Q 004430 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAgA--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGv 331 (754)
++..++..||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+.+.-++.... .-+..|+
T Consensus 247 ~l~~il~nLi~NA~k~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~g~Gl 315 (356)
T PRK10755 247 LLRLLLRNLVENAHRYSPEGSTITIKLSQ------EDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS-----RYGGIGL 315 (356)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC-----CCCCcCH
Confidence 556889999999999863 567777653 334568999999999999999998764332211 1245788
Q ss_pred eeeee---cccccceEEEEEeeC
Q 004430 332 GFKTG---AMRLGKDALVLTQTA 351 (754)
Q Consensus 332 GfKsA---smrLg~~v~V~SK~~ 351 (754)
|++.+ .-..|..+.+.|...
T Consensus 316 GL~i~~~i~~~~gg~i~i~s~~~ 338 (356)
T PRK10755 316 GLSIVSRITQLHHGQFFLQNRQE 338 (356)
T ss_pred HHHHHHHHHHHCCCEEEEEECCC
Confidence 87532 224566777766543
No 46
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.70 E-value=0.0047 Score=69.94 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcccccCC----CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccC
Q 004430 255 IFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFG 330 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfG 330 (754)
+..++.+|++||+++.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+.+.-+.+.+. +..|
T Consensus 434 l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~-------~g~G 500 (542)
T PRK11086 434 LITILGNLIENALEAVGGEEGGEISVSLHY------RNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKG-------SNRG 500 (542)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHHhCCCccCC-------CCCc
Confidence 55789999999999842 356666553 334567899999999999999998865554432 1348
Q ss_pred ceeeeec---ccccceEEEEEe
Q 004430 331 VGFKTGA---MRLGKDALVLTQ 349 (754)
Q Consensus 331 vGfKsAs---mrLg~~v~V~SK 349 (754)
+|+..+- -..|..+.|.|.
T Consensus 501 lGL~iv~~iv~~~~G~i~v~s~ 522 (542)
T PRK11086 501 VGLYLVKQSVENLGGSIAVESE 522 (542)
T ss_pred CcHHHHHHHHHHcCCEEEEEeC
Confidence 8875321 234556666554
No 47
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.68 E-value=0.0049 Score=68.72 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=57.2
Q ss_pred CHHHHHHHHHhcccccCCC--ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCc
Q 004430 254 WIFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAgAt--~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGv 331 (754)
.+..++..|++||+++... .|.|.+.. ..+.-.|+|.|||.||+++++.+++.-.+..+.. .....|..|+
T Consensus 317 ~l~~vl~NLl~NAik~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~~G~GL 389 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEGTHITVRWQR------VPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKA-RSRQTGGSGL 389 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHhccCcccccCC-CCCCCCCCch
Confidence 3567899999999999654 45555442 2345679999999999999999987633322211 1122345688
Q ss_pred eeeeec---ccccceEEEEEe
Q 004430 332 GFKTGA---MRLGKDALVLTQ 349 (754)
Q Consensus 332 GfKsAs---mrLg~~v~V~SK 349 (754)
|+..+- -..|.++.|.|.
T Consensus 390 GL~ivk~iv~~~gG~i~i~s~ 410 (430)
T PRK11006 390 GLAIVKHALSHHDSRLEIESE 410 (430)
T ss_pred HHHHHHHHHHHCCCEEEEEec
Confidence 875321 234566666654
No 48
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.65 E-value=0.0044 Score=70.90 Aligned_cols=85 Identities=19% Similarity=0.259 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcccccC------CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccc
Q 004430 255 IFGAIAELVDNSRDAK------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (754)
Q Consensus 255 pf~AIaELIDNA~DAg------At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGq 328 (754)
+...+.+|++||+++. ...|.|.+.. ..+.-.|.|.|||.||++++..+.+.-|++.+. ..-|.
T Consensus 433 l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~----~~~~g 502 (545)
T PRK15053 433 FAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------EGDDVVIEVADQGCGVPESLRDKIFEQGVSTRA----DEPGE 502 (545)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE------CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCC----CCCCC
Confidence 4568999999999983 3567766653 334567899999999999999999876666442 11234
Q ss_pred cCceeeeec---ccccceEEEEEe
Q 004430 329 FGVGFKTGA---MRLGKDALVLTQ 349 (754)
Q Consensus 329 fGvGfKsAs---mrLg~~v~V~SK 349 (754)
.|+|++.+- -..|..+.|.|.
T Consensus 503 ~GlGL~ivk~iv~~~~G~i~v~s~ 526 (545)
T PRK15053 503 HGIGLYLIASYVTRCGGVITLEDN 526 (545)
T ss_pred ceeCHHHHHHHHHHcCCEEEEEEC
Confidence 588885322 134555655553
No 49
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.61 E-value=0.0074 Score=62.96 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004430 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt--~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvG 332 (754)
+..++.+||.||+++... .|.|.+.. ..+...|.|.|||.||+++.+.+++......... .....+..|+|
T Consensus 230 l~~vl~nll~Nai~~~~~~~~i~i~~~~------~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~-~~~~~~g~glG 302 (333)
T TIGR02966 230 LRSAFSNLVSNAIKYTPEGGTITVRWRR------DGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKS-RSRDTGGTGLG 302 (333)
T ss_pred HHHHHHHHHHHhheeCCCCCeEEEEEEE------cCCEEEEEEEecCCCCCHHHHhhhccCceecCcc-cccCCCCCccc
Confidence 567899999999998654 45555543 2334679999999999999999988643322111 11122345888
Q ss_pred eeeec---ccccceEEEEEee
Q 004430 333 FKTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 333 fKsAs---mrLg~~v~V~SK~ 350 (754)
++.+- -..|.++.+.|..
T Consensus 303 L~~~~~~~~~~gG~i~~~s~~ 323 (333)
T TIGR02966 303 LAIVKHVLSRHHARLEIESEL 323 (333)
T ss_pred HHHHHHHHHHCCCEEEEEecC
Confidence 86422 2356677766644
No 50
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.53 E-value=0.0065 Score=67.20 Aligned_cols=89 Identities=20% Similarity=0.226 Sum_probs=59.3
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCc
Q 004430 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAgA--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGv 331 (754)
++..++.+||.||+.+.. ..|.|.+.. .++...|+|.|||.||+.+++.+.+.-.++.+.. ...-+..|+
T Consensus 368 ~l~~vl~nli~Na~~~~~~~~~i~i~~~~------~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~--~~~~~~~Gl 439 (475)
T PRK11100 368 LLRQALGNLLDNAIDFSPEGGTITLSAEV------DGEQVALSVEDQGPGIPDYALPRIFERFYSLPRP--ANGRKSTGL 439 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC--CCCCCCcch
Confidence 467899999999999864 467776653 3356779999999999999999987644332211 111234588
Q ss_pred eeeeec---ccccceEEEEEee
Q 004430 332 GFKTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 332 GfKsAs---mrLg~~v~V~SK~ 350 (754)
|++.+- ..+|..+.+.|..
T Consensus 440 GL~i~~~~~~~~~G~i~i~s~~ 461 (475)
T PRK11100 440 GLAFVREVARLHGGEVTLRNRP 461 (475)
T ss_pred hHHHHHHHHHHCCCEEEEEEcC
Confidence 876422 2355666666643
No 51
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.52 E-value=0.0072 Score=67.30 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004430 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt--~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvG 332 (754)
+..++.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+++++.+++.-.+..+.. .....|..|+|
T Consensus 353 l~qvl~nll~NAi~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~-~~~~~~g~GlG 425 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDSGGSLHISAEQ------RDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGS-RNRASGGSGLG 425 (466)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEE------cCCEEEEEEEecCCCcCHHHHHHhccCcccCCCC-cCCCCCCCcHH
Confidence 457899999999998654 56666553 3345678999999999999999887532222211 12234567888
Q ss_pred eeee---cccccceEEEEEee
Q 004430 333 FKTG---AMRLGKDALVLTQT 350 (754)
Q Consensus 333 fKsA---smrLg~~v~V~SK~ 350 (754)
+..+ .-..|.++.+.+..
T Consensus 426 L~iv~~i~~~~~G~l~~~s~~ 446 (466)
T PRK10549 426 LAICLNIVEAHNGRIIAAHSP 446 (466)
T ss_pred HHHHHHHHHHcCCEEEEEECC
Confidence 8532 22456666666643
No 52
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.37 E-value=0.0066 Score=72.32 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHh-HHHhhhcccCCCCCCCCCcccccCc
Q 004430 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD-VVRMTYFGHKQPDADDPNRIGRFGV 331 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee-L~~~l~fG~S~k~~~~~~~IGqfGv 331 (754)
...++.+||+||+++.. ..|.|.+.. .++.-.|.|.|||.||+++. ..+.+...++.+. +..|+
T Consensus 580 l~~vl~nLl~NAik~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~-------~G~GL 646 (679)
T TIGR02916 580 LERVLGHLVQNALEATPGEGRVAIRVER------ECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG-------AGMGI 646 (679)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEE------cCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC-------CCcch
Confidence 44689999999999964 467777663 23566899999999999998 5666654443331 34688
Q ss_pred eeeeec---ccccceEEEEEee
Q 004430 332 GFKTGA---MRLGKDALVLTQT 350 (754)
Q Consensus 332 GfKsAs---mrLg~~v~V~SK~ 350 (754)
|++.+- -..|.++.|.|..
T Consensus 647 GL~i~~~iv~~~gG~i~v~s~~ 668 (679)
T TIGR02916 647 GVYECRQYVEEIGGRIEVESTP 668 (679)
T ss_pred hHHHHHHHHHHcCCEEEEEecC
Confidence 876432 2356667666643
No 53
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=96.36 E-value=0.011 Score=71.97 Aligned_cols=121 Identities=18% Similarity=0.238 Sum_probs=75.9
Q ss_pred HHHHHHHHHhccccc----CCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHH--------hhh-------ccc
Q 004430 255 IFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-------FGH 315 (754)
Q Consensus 255 pf~AIaELIDNA~DA----gAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-------fG~ 315 (754)
+...+.|+||||+|. .++.|+|.|.. ...++|.|||.||+-+.-.. .|. |+.
T Consensus 130 LhhLv~EIlDNSVDE~laG~~~~I~V~i~~---------DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~ 200 (903)
T PTZ00109 130 LHQLLFEILDNSVDEYLAGECNKITVVLHK---------DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKFQD 200 (903)
T ss_pred ceEEEEEEeeccchhhccCCCcEEEEEEcC---------CCeEEEEeCCccccccccccCCCcceeEEEEEeccCccccC
Confidence 345688999999996 26888888862 36899999999998643221 111 322
Q ss_pred CC-------------------C---------------C--CCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEE
Q 004430 316 KQ-------------------P---------------D--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFL 359 (754)
Q Consensus 316 S~-------------------k---------------~--~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~l 359 (754)
.. + . ..=.-.-|..|+|. ++.=.|+..+.|.+++++. .+
T Consensus 201 ~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~-SVVNALS~~l~VeV~RdGK----~y 275 (903)
T PTZ00109 201 TFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGL-SVVNALSSFLKVDVFKGGK----IY 275 (903)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcce-eeeeeccCeEEEEEEECCE----EE
Confidence 10 0 0 00024678999999 4555599999999999885 46
Q ss_pred EEEecCCCeeEEEecc--ccCCCCcEEEEEec
Q 004430 360 SQSLNQGKDNLEIPIV--SYYRKGQFMELDTV 389 (754)
Q Consensus 360 s~sf~~g~~~i~VPi~--~~~~~Gt~I~l~l~ 389 (754)
.++|..|.-.-.+.+. .-...||.|...+.
T Consensus 276 ~q~F~rG~~v~pLkvig~~~~~tGT~VtF~PD 307 (903)
T PTZ00109 276 SIELSKGKVTKPLSVFSCPLKKRGTTIHFLPD 307 (903)
T ss_pred EEEeCCCcccCCccccCCcCCCCceEEEEEeC
Confidence 6777655311111111 11347898876553
No 54
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.21 E-value=0.011 Score=74.19 Aligned_cols=122 Identities=18% Similarity=0.251 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHH----h--hhccc---CCCCC
Q 004430 255 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR----M--TYFGH---KQPDA 320 (754)
Q Consensus 255 pf~AIaELIDNA~DAg-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~----~--l~fG~---S~k~~ 320 (754)
+...+-|+|+||+|-. ++.|+|.|+. +...|+|.|||.||+-+--.. . +-||. +.+-.
T Consensus 53 L~ki~dEIldNAvDe~~~~g~~~~I~V~i~~--------~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFd 124 (1135)
T PLN03128 53 LYKIFDEILVNAADNKQRDPSMDSLKVDIDV--------EQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFD 124 (1135)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCcEEEEEEEc--------CCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccC
Confidence 4567899999999963 3788888873 246899999999998652211 0 11221 22211
Q ss_pred --CCCCcccccCceeeeecccccceEEEEEe--eCCCCceeEEEEEecCCCeeEEEecc-cc--CCCCcEEEEEec
Q 004430 321 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQ--TADSRSIAFLSQSLNQGKDNLEIPIV-SY--YRKGQFMELDTV 389 (754)
Q Consensus 321 --~~~~~IGqfGvGfKsAsmrLg~~v~V~SK--~~g~~sv~~ls~sf~~g~~~i~VPi~-~~--~~~Gt~I~l~l~ 389 (754)
.-.-.-|+.|+|.+.+- .++..+.|.++ ++|. .+.++|..|......|.. .. ..+||+|+..+.
T Consensus 125 d~~ykvSGGlhGvGasvvN-aLS~~f~Vev~d~r~gk----~y~q~f~~G~~~~~~p~i~~~~~~~~GT~ItF~PD 195 (1135)
T PLN03128 125 DNEKKTTGGRNGYGAKLAN-IFSTEFTVETADGNRGK----KYKQVFTNNMSVKSEPKITSCKASENWTKITFKPD 195 (1135)
T ss_pred CccceeeccccCCCCeEEE-eecCeEEEEEEECCCCe----EEEEEeCCCcccCCCceeccCCCCCCceEEEEEEC
Confidence 12457899999995544 48999999998 4443 355677555322222322 22 247898877653
No 55
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.20 E-value=0.021 Score=72.72 Aligned_cols=122 Identities=19% Similarity=0.257 Sum_probs=77.0
Q ss_pred HHHHHHHHHhcccccC--------CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHH--h----hhccc---CC
Q 004430 255 IFGAIAELVDNSRDAK--------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--M----TYFGH---KQ 317 (754)
Q Consensus 255 pf~AIaELIDNA~DAg--------At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--~----l~fG~---S~ 317 (754)
+.-.+-|+|+||+|-. ++.|+|.|+. +...|+|.|||.||+-+--.. + +-||+ +.
T Consensus 58 L~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~--------d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGg 129 (1388)
T PTZ00108 58 LYKIFDEILVNAADNKARDKGGHRMTYIKVTIDE--------ENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSS 129 (1388)
T ss_pred hhhhHHHHhhhhhhhhcccCCCCCccEEEEEEec--------cCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccc
Confidence 4567899999999952 4788888873 236899999999997643111 0 11332 22
Q ss_pred CC--CCCCCcccccCceeeeecccccceEEEEEeeC--CCCceeEEEEEecCCCeeEEEecc-cc-C-CCCcEEEEEec
Q 004430 318 PD--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA--DSRSIAFLSQSLNQGKDNLEIPIV-SY-Y-RKGQFMELDTV 389 (754)
Q Consensus 318 k~--~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~--g~~sv~~ls~sf~~g~~~i~VPi~-~~-~-~~Gt~I~l~l~ 389 (754)
+- ..-...-|+.|+|.+.+- .++..+.|.++.. +. .+.++|..|-....-|.. +. . .+||.|+..+.
T Consensus 130 kfdd~~yKvSGGlhGVGasvvN-alS~~f~Vev~r~~~gk----~y~q~f~~Gm~~~~~p~i~~~~~~~~GT~VtF~PD 203 (1388)
T PTZ00108 130 NYDDTEKRVTGGRNGFGAKLTN-IFSTKFTVECVDSKSGK----KFKMTWTDNMSKKSEPRITSYDGKKDYTKVTFYPD 203 (1388)
T ss_pred cCCCCceeeecccccCCccccc-cccceEEEEEEECCCCC----EEEEEecCCCcCCCCCccCCCCCCCCceEEEEEeC
Confidence 21 112457899999995544 4899999999988 54 355666544212122222 22 2 47898877653
No 56
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.16 E-value=0.012 Score=66.40 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcccccCCCc--cEEEEEecccccCCCCc-CEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCc
Q 004430 255 IFGAIAELVDNSRDAKATK--LEISIESIYFKKAGKDI-PMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt~--V~I~I~~~~~~~~~~~~-~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGv 331 (754)
+..++.+||+||+.+.... |.|.+.. ..+. ..|.|.|||.||+.+++.+.+..+.+.+. +..|+
T Consensus 501 l~~~~~nli~na~~~~~~~~~i~v~~~~------~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~-------~g~gl 567 (607)
T PRK11360 501 LKQVLLNILINAVQAISARGKIRIRTWQ------YSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKA-------KGTGL 567 (607)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEEE------cCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCC-------CCCch
Confidence 5678999999999986544 4554432 1223 78999999999999999888765443331 23477
Q ss_pred eeeee---cccccceEEEEEee
Q 004430 332 GFKTG---AMRLGKDALVLTQT 350 (754)
Q Consensus 332 GfKsA---smrLg~~v~V~SK~ 350 (754)
|+..+ .-.+|.++.+.|..
T Consensus 568 GL~~~~~~~~~~~G~i~~~s~~ 589 (607)
T PRK11360 568 GLALSQRIINAHGGDIEVESEP 589 (607)
T ss_pred hHHHHHHHHHHcCCEEEEEEcC
Confidence 76532 12356677766643
No 57
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.11 E-value=0.011 Score=67.74 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCceee
Q 004430 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGfK 334 (754)
...++..||+||+++....+.|.+.. ..+.-.|.|.|||.||+++++.+.+.-++.... ..+..|+|+.
T Consensus 379 l~~vl~NLi~NAik~~~~~i~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~-----~~~G~GLGL~ 447 (485)
T PRK10815 379 FMEVMGNVLDNACKYCLEFVEISARQ------TDEHLHIVVEDDGPGIPESKRELIFDRGQRADT-----LRPGQGLGLS 447 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEE------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCC-----CCCCcchhHH
Confidence 45799999999999988878887763 234567999999999999999888753332211 1124688885
Q ss_pred eec---ccccceEEEEEe
Q 004430 335 TGA---MRLGKDALVLTQ 349 (754)
Q Consensus 335 sAs---mrLg~~v~V~SK 349 (754)
.+- -..|.++.|.|.
T Consensus 448 Ivk~iv~~~gG~i~v~s~ 465 (485)
T PRK10815 448 VAREITEQYEGKISAGDS 465 (485)
T ss_pred HHHHHHHHcCCEEEEEEC
Confidence 321 134555555543
No 58
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=95.99 E-value=0.018 Score=70.09 Aligned_cols=86 Identities=10% Similarity=0.183 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCcee
Q 004430 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGf 333 (754)
+..+|..||+||+++.. ..|.|.+.. ..+.-.|+|.|||.||+++++.+.+.-.+..+. ..|..|+|+
T Consensus 514 l~~il~NLl~NAik~~~~g~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~g~GLGL 582 (921)
T PRK15347 514 LRQILVNLLGNAVKFTETGGIRLRVKR------HEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADT-----HSQGTGLGL 582 (921)
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCC-----CCCCCchHH
Confidence 55789999999999853 467777653 234567999999999999999998763332221 124568887
Q ss_pred eeec---ccccceEEEEEeeC
Q 004430 334 KTGA---MRLGKDALVLTQTA 351 (754)
Q Consensus 334 KsAs---mrLg~~v~V~SK~~ 351 (754)
..+- -.+|.++.|.|...
T Consensus 583 ~i~~~~~~~~gG~i~i~s~~~ 603 (921)
T PRK15347 583 TIASSLAKMMGGELTLFSTPG 603 (921)
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 5322 24577787777544
No 59
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.97 E-value=0.019 Score=69.19 Aligned_cols=93 Identities=14% Similarity=0.238 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCcee
Q 004430 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGf 333 (754)
+..+|..||+||+++.. ..|.|.+... ..+.-.|.|.|||.||+.+++.+++...++.+........+.-|+|+
T Consensus 399 l~qvl~NLl~NAik~~~~g~v~i~~~~~-----~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL 473 (779)
T PRK11091 399 LRQILWNLISNAVKFTQQGGVTVRVRYE-----EGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGL 473 (779)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEEc-----cCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHH
Confidence 45789999999999864 4577766531 13346789999999999999999986333332211223345567887
Q ss_pred eee---cccccceEEEEEeeCC
Q 004430 334 KTG---AMRLGKDALVLTQTAD 352 (754)
Q Consensus 334 KsA---smrLg~~v~V~SK~~g 352 (754)
..+ .-..|.++.|.|....
T Consensus 474 ~i~~~iv~~~gG~i~v~s~~g~ 495 (779)
T PRK11091 474 AVSKRLAQAMGGDITVTSEEGK 495 (779)
T ss_pred HHHHHHHHHcCCEEEEEecCCC
Confidence 422 1246888888876543
No 60
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=95.75 E-value=0.014 Score=68.08 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=46.7
Q ss_pred CHHHHHHHHHhcccccCC----CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCC
Q 004430 254 WIFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQP 318 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAgA----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k 318 (754)
-+...+-.||.||+||-+ ..|.|.... .++.-.|+|.|||.|+.++-+.++|...++.|
T Consensus 497 RLeQVLvNLl~NALDA~~~~~~~~i~i~~~~------~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK 559 (603)
T COG4191 497 RLEQVLVNLLQNALDAMAGQEDRRLSIRAQR------EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTK 559 (603)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeeEEEEEe------cCCeEEEEEccCCCCCCHHHHHhhcCCccccC
Confidence 478899999999999954 567776653 44567899999999999999999987434334
No 61
>PRK10337 sensor protein QseC; Provisional
Probab=95.73 E-value=0.02 Score=63.68 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCceee
Q 004430 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGfK 334 (754)
+..++.+||+||+.+....-.|.+... ...|+|.|||.||+++++.+.+.-.+..+. ...+.+|+|+.
T Consensus 353 l~~vl~Nli~NA~k~~~~~~~i~i~~~--------~~~i~i~D~G~Gi~~~~~~~if~~f~~~~~----~~~~g~GlGL~ 420 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSPQGSVVDVTLN--------ARNFTVRDNGPGVTPEALARIGERFYRPPG----QEATGSGLGLS 420 (449)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEE--------eeEEEEEECCCCCCHHHHHHhcccccCCCC----CCCCccchHHH
Confidence 456899999999999765434444321 237999999999999999988753222111 12245788875
Q ss_pred ee---cccccceEEEEEe
Q 004430 335 TG---AMRLGKDALVLTQ 349 (754)
Q Consensus 335 sA---smrLg~~v~V~SK 349 (754)
-+ .-+.|.++.+.+.
T Consensus 421 iv~~i~~~~gg~l~~~s~ 438 (449)
T PRK10337 421 IVRRIAKLHGMNVSFGNA 438 (449)
T ss_pred HHHHHHHHcCCEEEEEec
Confidence 32 1234566666554
No 62
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=95.63 E-value=0.024 Score=69.15 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeccccc---------CCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCC
Q 004430 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKK---------AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP 323 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA--t~V~I~I~~~~~~~---------~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~ 323 (754)
+..++..||+||+++.. ..|.|.+....... ..++.-.|.|.|||.||+++++.+++.-.++.+.
T Consensus 561 L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~---- 636 (828)
T PRK13837 561 LQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA---- 636 (828)
T ss_pred HHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC----
Confidence 55789999999999843 56776665310000 0123457899999999999999998864333221
Q ss_pred CcccccCceeeee---cccccceEEEEEeeC
Q 004430 324 NRIGRFGVGFKTG---AMRLGKDALVLTQTA 351 (754)
Q Consensus 324 ~~IGqfGvGfKsA---smrLg~~v~V~SK~~ 351 (754)
+..|+|+..+ .-..|.++.|.|...
T Consensus 637 ---~G~GLGL~i~~~iv~~~gG~i~v~s~~g 664 (828)
T PRK13837 637 ---GGTGLGLATVHGIVSAHAGYIDVQSTVG 664 (828)
T ss_pred ---CCCcchHHHHHHHHHHCCCEEEEEecCC
Confidence 5568887532 224677788777543
No 63
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=95.39 E-value=0.039 Score=66.44 Aligned_cols=89 Identities=16% Similarity=0.173 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004430 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvG 332 (754)
+..++..||+||+++.. ..|.|.+.. ..+.-.|+|.|||.||+++++.+.+.-..+.+.. .....+..|+|
T Consensus 598 L~~il~NLI~NAik~s~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~-~~~~~~g~GLG 670 (703)
T TIGR03785 598 IAQMLDKLVDNAREFSPEDGLIEVGLSQ------NKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQ-GAQDQPHLGLG 670 (703)
T ss_pred HHHHHHHHHHHHHHHCCCCCeEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCC-CCCCCCCccHH
Confidence 45789999999999854 346666553 3345679999999999999999988644332211 11122347888
Q ss_pred eeee---cccccceEEEEEee
Q 004430 333 FKTG---AMRLGKDALVLTQT 350 (754)
Q Consensus 333 fKsA---smrLg~~v~V~SK~ 350 (754)
++.+ ....|.++.+.+..
T Consensus 671 L~Ivr~Iv~~~gG~I~v~s~~ 691 (703)
T TIGR03785 671 LYIVRLIADFHQGRIQAENRQ 691 (703)
T ss_pred HHHHHHHHHHcCCEEEEEECC
Confidence 8643 22456667666654
No 64
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=95.39 E-value=0.044 Score=51.63 Aligned_cols=81 Identities=20% Similarity=0.145 Sum_probs=48.1
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccc
Q 004430 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAg-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGq 328 (754)
.+..++.||+.||+..+ ...|.|.+.. ..+...|.|.|+|.||+. +.+.+....+.+. ..+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~------~~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~-----~~~~ 105 (137)
T TIGR01925 39 DIKTAVSEAVTNAIIHGYEENCEGVVYISATI------EDHEVYITVRDEGIGIEN--LEEAREPLYTSKP-----ELER 105 (137)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEEE------eCCEEEEEEEEcCCCcCc--hhHhhCCCcccCC-----CCCC
Confidence 35588999999999753 2457776653 234567899999999973 3344432222221 1234
Q ss_pred cCceeeeecccccceEEEEE
Q 004430 329 FGVGFKTGAMRLGKDALVLT 348 (754)
Q Consensus 329 fGvGfKsAsmrLg~~v~V~S 348 (754)
-|+|+... -+++.++.+.+
T Consensus 106 ~GlGL~lv-~~~~~~l~~~~ 124 (137)
T TIGR01925 106 SGMGFTVM-ENFMDDVSVDS 124 (137)
T ss_pred CcccHHHH-HHhCCcEEEEE
Confidence 57777432 23445555544
No 65
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=95.32 E-value=0.043 Score=67.05 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCcee
Q 004430 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGf 333 (754)
+..++..||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+.+.-.+... ...|..|+|+
T Consensus 562 l~qil~NLl~NAik~~~~g~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-----~~~~g~GLGL 630 (914)
T PRK11466 562 IRQVITNLLSNALRFTDEGSIVLRSRT------DGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVS-----GKRGGTGLGL 630 (914)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHhchhhcCC-----CCCCCCcccH
Confidence 45688999999999853 456666653 23456799999999999999999876333221 1225578887
Q ss_pred eee---cccccceEEEEEeeCC
Q 004430 334 KTG---AMRLGKDALVLTQTAD 352 (754)
Q Consensus 334 KsA---smrLg~~v~V~SK~~g 352 (754)
..+ .-.+|.++.|.|...+
T Consensus 631 ~i~~~l~~~~gG~i~v~s~~~~ 652 (914)
T PRK11466 631 TISSRLAQAMGGELSATSTPEV 652 (914)
T ss_pred HHHHHHHHHcCCEEEEEecCCC
Confidence 532 2246888888876543
No 66
>PRK09835 sensor kinase CusS; Provisional
Probab=95.30 E-value=0.037 Score=61.82 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=57.6
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-cccCCCCCCCCCcccccC
Q 004430 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFG 330 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAgA--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~~~~~IGqfG 330 (754)
.+..++.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++...+. |-..... ....-+..|
T Consensus 375 ~l~~vl~nll~Na~~~~~~~~~I~i~~~~------~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~--~~~~~~g~G 446 (482)
T PRK09835 375 MLRRAISNLLSNALRYTPAGEAITVRCQE------VDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPS--RQRKGEGSG 446 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEE------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC--CCCCCCCcc
Confidence 356899999999999854 346666653 23346799999999999999998875 3222211 112224578
Q ss_pred ceeeee---cccccceEEEEEe
Q 004430 331 VGFKTG---AMRLGKDALVLTQ 349 (754)
Q Consensus 331 vGfKsA---smrLg~~v~V~SK 349 (754)
+|+.-+ .-..|.++.+.|.
T Consensus 447 lGL~i~~~i~~~~~g~i~~~s~ 468 (482)
T PRK09835 447 IGLAIVKSIVVAHKGTVAVTSD 468 (482)
T ss_pred hHHHHHHHHHHHCCCEEEEEEC
Confidence 888532 2235666666654
No 67
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=95.25 E-value=0.046 Score=67.04 Aligned_cols=88 Identities=16% Similarity=0.257 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCc-CEEEEEeCCCCCCHHhHHHhhh-cccCCCCCCCCCcccccCc
Q 004430 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDI-PMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGV 331 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA-t~V~I~I~~~~~~~~~~~~-~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~~~~~IGqfGv 331 (754)
+..+|..||+||+.+.. ..|.|.+.. ..+. -.|.|.|+|.||+++++.+++. |.... . ....|..|+
T Consensus 580 l~~il~nLi~NAik~~~~g~i~i~~~~------~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-~---~~~~~g~GL 649 (968)
T TIGR02956 580 IRQVLINLVGNAIKFTDRGSVVLRVSL------NDDSSLLFEVEDTGCGIAEEEQATLFDAFTQAD-G---RRRSGGTGL 649 (968)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEEEE------cCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccC-C---CCCCCCccH
Confidence 45789999999999854 457777654 2233 6799999999999999999875 43322 1 222355688
Q ss_pred eeeee---cccccceEEEEEeeCC
Q 004430 332 GFKTG---AMRLGKDALVLTQTAD 352 (754)
Q Consensus 332 GfKsA---smrLg~~v~V~SK~~g 352 (754)
|+..+ .-.+|.++.|.|...+
T Consensus 650 GL~i~~~l~~~~gG~i~~~s~~~~ 673 (968)
T TIGR02956 650 GLAISQRLVEAMDGELGVESELGV 673 (968)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCC
Confidence 88532 2246778888776543
No 68
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=94.98 E-value=0.046 Score=58.58 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEecccc--cCCCC----cCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCccc
Q 004430 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFK--KAGKD----IPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 327 (754)
Q Consensus 255 pf~AIaELIDNA~DAg-At~V~I~I~~~~~~--~~~~~----~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IG 327 (754)
+..++..||+||+++. .....|.+...... ....+ ...|.|.|||.||+++.+.+.+.-+++.+. +
T Consensus 238 l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~-------~ 310 (348)
T PRK11073 238 IEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE-------G 310 (348)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC-------C
Confidence 5688999999999985 33333433321100 00000 136899999999999998887753333321 2
Q ss_pred ccCceeeee---cccccceEEEEEee
Q 004430 328 RFGVGFKTG---AMRLGKDALVLTQT 350 (754)
Q Consensus 328 qfGvGfKsA---smrLg~~v~V~SK~ 350 (754)
.-|+|+..+ .-..|.++.|.|..
T Consensus 311 g~GlGL~i~~~iv~~~gG~i~~~s~~ 336 (348)
T PRK11073 311 GTGLGLSIARNLIDQHSGKIEFTSWP 336 (348)
T ss_pred CccCCHHHHHHHHHHcCCeEEEEecC
Confidence 347777422 22456667776643
No 69
>PRK10490 sensor protein KdpD; Provisional
Probab=94.90 E-value=0.056 Score=66.89 Aligned_cols=88 Identities=13% Similarity=0.128 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004430 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt--~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvG 332 (754)
+..++..||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+++++.+++.-.++.+. ....+..|+|
T Consensus 779 L~qVL~NLL~NAik~s~~g~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~---~~~~~G~GLG 849 (895)
T PRK10490 779 FERVLINLLENAVKYAGAQAEIGIDAHV------EGERLQLDVWDNGPGIPPGQEQLIFDKFARGNK---ESAIPGVGLG 849 (895)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHhcCCCccCCC---CCCCCCccHH
Confidence 567899999999998643 46665543 234567999999999999999988863332221 1122346788
Q ss_pred eeeec---ccccceEEEEEeeC
Q 004430 333 FKTGA---MRLGKDALVLTQTA 351 (754)
Q Consensus 333 fKsAs---mrLg~~v~V~SK~~ 351 (754)
+..+- -..|.++.+.|...
T Consensus 850 L~Ivk~ive~hGG~I~v~s~~~ 871 (895)
T PRK10490 850 LAICRAIVEVHGGTIWAENRPE 871 (895)
T ss_pred HHHHHHHHHHcCCEEEEEECCC
Confidence 75321 23567777766443
No 70
>PRK10547 chemotaxis protein CheA; Provisional
Probab=94.85 E-value=0.071 Score=64.04 Aligned_cols=87 Identities=20% Similarity=0.325 Sum_probs=54.7
Q ss_pred HHHHHHHhcccccCC--------------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHH-------------
Q 004430 257 GAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR------------- 309 (754)
Q Consensus 257 ~AIaELIDNA~DAgA--------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~------------- 309 (754)
..|..||.||+|+|- ..|.|.... ..+.-.|.|.|||.||+++.+.+
T Consensus 388 dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~------~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~l 461 (670)
T PRK10547 388 DPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEH------QGGNICIEVTDDGAGLNRERILAKAASQGLAVSENM 461 (670)
T ss_pred HHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccC
Confidence 457799999999862 245665543 23456789999999999987753
Q ss_pred --------hhhcccCCCCCCCCCcccccCceeee---ecccccceEEEEEeeC
Q 004430 310 --------MTYFGHKQPDADDPNRIGRFGVGFKT---GAMRLGKDALVLTQTA 351 (754)
Q Consensus 310 --------~l~fG~S~k~~~~~~~IGqfGvGfKs---AsmrLg~~v~V~SK~~ 351 (754)
.|.-|++.+.. ...+...|+|+.- ..-.++..+.|.|...
T Consensus 462 s~~e~~~lIF~pgfst~~~--~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g 512 (670)
T PRK10547 462 SDEEVGMLIFAPGFSTAEQ--VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQG 512 (670)
T ss_pred CHHHHHHHhhcCCcccccc--cccCCCCchhHHHHHHHHHHcCCEEEEEecCC
Confidence 22224444321 1223446888742 2335777888877543
No 71
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=94.80 E-value=0.075 Score=66.03 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-cccCCCCCCCCCcccccCce
Q 004430 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~~~~~IGqfGvG 332 (754)
+..+|..||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+.+. |-..... .....+..|+|
T Consensus 563 L~qvl~NLl~NAik~t~~G~I~I~v~~------~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~--~~~~~~GtGLG 634 (924)
T PRK10841 563 LQQVISNLLSNAIKFTDTGCIVLHVRV------DGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTG--VQRNFQGTGLG 634 (924)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEE------eCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCC--CCCCCCCeehh
Confidence 45789999999999853 346666553 23456789999999999999999875 3222111 11222446888
Q ss_pred eeeec---ccccceEEEEEeeC
Q 004430 333 FKTGA---MRLGKDALVLTQTA 351 (754)
Q Consensus 333 fKsAs---mrLg~~v~V~SK~~ 351 (754)
+..+. -..|.++.|.|...
T Consensus 635 L~I~k~lv~~~gG~I~v~S~~g 656 (924)
T PRK10841 635 LAICEKLINMMDGDISVDSEPG 656 (924)
T ss_pred HHHHHHHHHHCCCEEEEEEcCC
Confidence 75321 24678888887644
No 72
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=94.64 E-value=0.09 Score=63.98 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-cccCCCCCCCCCcccccCce
Q 004430 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~~~~~IGqfGvG 332 (754)
+..+|..||+||+.+.. ..|.|.+.... .......-.|.|.|||.||+++++.+.+. |-..... .....|..|+|
T Consensus 409 l~~vl~NLl~NAik~~~~g~v~i~v~~~~-~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--~~~~~~g~GLG 485 (919)
T PRK11107 409 LQQIITNLVGNAIKFTESGNIDILVELRA-LSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADAS--ISRRHGGTGLG 485 (919)
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEEEe-cCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCC--CCCCCCCcchh
Confidence 45789999999999854 34555554211 00011134689999999999999998875 4322111 12234567888
Q ss_pred eeee---cccccceEEEEEeeCC
Q 004430 333 FKTG---AMRLGKDALVLTQTAD 352 (754)
Q Consensus 333 fKsA---smrLg~~v~V~SK~~g 352 (754)
+.-+ .-..|.++.|.|...+
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~~ 508 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPNR 508 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCCC
Confidence 7532 2246788888886543
No 73
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=94.13 E-value=0.15 Score=63.36 Aligned_cols=93 Identities=14% Similarity=0.184 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCcee
Q 004430 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGf 333 (754)
+..+|..||+||+.+.+ ..|.|.+.... ...+.-.|.|.|+|.||+++++.+++.-..+.+.. ...-+..|+|+
T Consensus 566 L~QVL~NLL~NAik~t~~G~I~I~v~~~~---~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~--~~~~~GtGLGL 640 (894)
T PRK10618 566 LRKILLLLLNYAITTTAYGKITLEVDQDE---SSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQG--DRYGKASGLTF 640 (894)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcc---CCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCC--CCCCCCcChhH
Confidence 45789999999999854 35666665310 01234578999999999999999987522222211 11123457776
Q ss_pred eee---cccccceEEEEEeeCC
Q 004430 334 KTG---AMRLGKDALVLTQTAD 352 (754)
Q Consensus 334 KsA---smrLg~~v~V~SK~~g 352 (754)
..+ .-..|.++.|.|...+
T Consensus 641 aI~k~Lve~~GG~I~v~S~~g~ 662 (894)
T PRK10618 641 FLCNQLCRKLGGHLTIKSREGL 662 (894)
T ss_pred HHHHHHHHHcCCEEEEEECCCC
Confidence 321 2246888888886543
No 74
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=94.02 E-value=0.13 Score=57.41 Aligned_cols=74 Identities=23% Similarity=0.456 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcccccC----------CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCC--C
Q 004430 255 IFGAIAELVDNSRDAK----------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD--D 322 (754)
Q Consensus 255 pf~AIaELIDNA~DAg----------At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~--~ 322 (754)
+.-.+-||..||..|. -..|+|.+-. +++...+.|.|-|+|++++++.+++.|++|..... +
T Consensus 261 L~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~------gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d 334 (414)
T KOG0787|consen 261 LYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAK------GDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSD 334 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEec------CCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCC
Confidence 5568899999999992 2447777763 45567889999999999999999999998865321 1
Q ss_pred ---CCcccccCceee
Q 004430 323 ---PNRIGRFGVGFK 334 (754)
Q Consensus 323 ---~~~IGqfGvGfK 334 (754)
....--||-|+-
T Consensus 335 ~~~~~plaGfG~GLP 349 (414)
T KOG0787|consen 335 NNRTAPLAGFGFGLP 349 (414)
T ss_pred CCCcCcccccccCCc
Confidence 234445666653
No 75
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=93.81 E-value=0.11 Score=60.37 Aligned_cols=76 Identities=17% Similarity=0.388 Sum_probs=55.7
Q ss_pred HHHHHHHHHhccccc-CCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCcee
Q 004430 255 IFGAIAELVDNSRDA-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (754)
Q Consensus 255 pf~AIaELIDNA~DA-gAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGf 333 (754)
....++|-+.||+.. .|++|+|.+.. ..+...++|+|||+|++..+ ...|.||+-.
T Consensus 482 lLqIvREAlsNa~KHa~As~i~V~~~~------~~g~~~~~VeDnG~Gi~~~~-----------------e~~gHyGL~I 538 (574)
T COG3850 482 LLQIVREALSNAIKHAQASEIKVTVSQ------NDGQVTLTVEDNGVGIDEAA-----------------EPSGHYGLNI 538 (574)
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEEe------cCCeEEEEEeeCCcCCCCcc-----------------CCCCCcchHH
Confidence 457799999999975 79999999874 33788999999999987642 4567887664
Q ss_pred ee-ecccccceEEEEEeeCCC
Q 004430 334 KT-GAMRLGKDALVLTQTADS 353 (754)
Q Consensus 334 Ks-AsmrLg~~v~V~SK~~g~ 353 (754)
-. =+=+|+..+.|..+..+.
T Consensus 539 M~ERA~~L~~~L~i~~~~~gG 559 (574)
T COG3850 539 MRERAQRLGGQLRIRRREGGG 559 (574)
T ss_pred HHHHHHHhcCeEEEeecCCCC
Confidence 10 112577777777765553
No 76
>PRK13557 histidine kinase; Provisional
Probab=93.68 E-value=0.2 Score=56.48 Aligned_cols=92 Identities=16% Similarity=0.184 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcccccCCCc--cEEEEEeccccc---------CCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCC
Q 004430 255 IFGAIAELVDNSRDAKATK--LEISIESIYFKK---------AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP 323 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt~--V~I~I~~~~~~~---------~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~ 323 (754)
+..++..|+.||+++.... +.|......... ..++.-.|.|.|||.||++++..+++...++.+.
T Consensus 278 l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~---- 353 (540)
T PRK13557 278 AEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE---- 353 (540)
T ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC----
Confidence 4578999999999985433 444332110000 0112346999999999999999888864443332
Q ss_pred CcccccCceeee---ecccccceEEEEEeeC
Q 004430 324 NRIGRFGVGFKT---GAMRLGKDALVLTQTA 351 (754)
Q Consensus 324 ~~IGqfGvGfKs---AsmrLg~~v~V~SK~~ 351 (754)
..+..|+|+.. ..-.+|..+.|.|...
T Consensus 354 -~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~ 383 (540)
T PRK13557 354 -EGKGTGLGLSMVYGFAKQSGGAVRIYSEVG 383 (540)
T ss_pred -CCCCCCccHHHHHHHHHHCCCEEEEEecCC
Confidence 12345778642 2234677888877543
No 77
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=93.54 E-value=0.14 Score=47.34 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=50.6
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccc
Q 004430 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAgAt-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGq 328 (754)
....|+.|++.||+..+.. .|.|.+.. ..+.-.|.|.|+|.|+++..+.....-.. .....
T Consensus 31 ~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~------~~~~l~i~v~D~G~~~d~~~~~~~~~~~~--------~~~~~ 96 (125)
T PF13581_consen 31 DLELAVSEALTNAVEHGYPGDPDGPVDVRLEV------DPDRLRISVRDNGPGFDPEQLPQPDPWEP--------DSLRE 96 (125)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEE------cCCEEEEEEEECCCCCChhhccCcccccC--------CCCCC
Confidence 3568999999999999753 56666553 34567899999999999987544321110 11222
Q ss_pred cCceeeeecccccceEEE
Q 004430 329 FGVGFKTGAMRLGKDALV 346 (754)
Q Consensus 329 fGvGfKsAsmrLg~~v~V 346 (754)
-|.|+... -++.+++.+
T Consensus 97 ~G~Gl~li-~~l~D~~~~ 113 (125)
T PF13581_consen 97 GGRGLFLI-RSLMDEVDY 113 (125)
T ss_pred CCcCHHHH-HHHHcEEEE
Confidence 36666422 246788877
No 78
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=93.49 E-value=0.2 Score=63.36 Aligned_cols=93 Identities=11% Similarity=0.164 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcccccCCC-ccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCcee
Q 004430 255 IFGAIAELVDNSRDAKAT-KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt-~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGf 333 (754)
+..+|..||+||+++... .+.|.+.... .......-.|.|.|||.||+++++.+++...++.+. ....+..|+|+
T Consensus 829 l~qvl~NLl~NAik~~~~g~i~i~~~~~~-~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~---~~~~~G~GLGL 904 (1197)
T PRK09959 829 FKQVLSNLLSNALKFTTEGAVKITTSLGH-IDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA---GRQQTGSGLGL 904 (1197)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEee-ecCCceEEEEEEEEcCCCCCHHHHHHhhcccccccc---CCCCCCcCchH
Confidence 557899999999999643 4455443210 000112245799999999999999998763332221 11223468887
Q ss_pred eee---cccccceEEEEEeeC
Q 004430 334 KTG---AMRLGKDALVLTQTA 351 (754)
Q Consensus 334 KsA---smrLg~~v~V~SK~~ 351 (754)
..+ .-..|.++.|.|...
T Consensus 905 ~i~~~iv~~~gG~i~v~s~~~ 925 (1197)
T PRK09959 905 MICKELIKNMQGDLSLESHPG 925 (1197)
T ss_pred HHHHHHHHHcCCEEEEEeCCC
Confidence 532 124677888877644
No 79
>PRK03660 anti-sigma F factor; Provisional
Probab=93.29 E-value=0.26 Score=46.81 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=32.8
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCcCEEEEEeCCCCCCH
Q 004430 254 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 304 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAgA-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ 304 (754)
.+..++.||+.||+..+. ..|.|.+.. ..+...++|.|+|.||+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~------~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 39 EIKTAVSEAVTNAIIHGYENNPDGVVYIEVEI------EEEELEITVRDEGKGIED 88 (146)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE------CCCEEEEEEEEccCCCCh
Confidence 356889999999997542 346666553 234567899999999975
No 80
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=93.10 E-value=0.19 Score=49.56 Aligned_cols=85 Identities=18% Similarity=0.092 Sum_probs=53.7
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccc
Q 004430 254 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAgA-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGq 328 (754)
..--|+.|++.||+..+- ..|.|.+.. ..+...+.|.|+|.||+++.+...+......... +....|
T Consensus 42 ~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~------~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~-~~~~~~- 113 (159)
T TIGR01924 42 DLKIAVSEACTNAVKHAYKEGENGEIGISFHI------YEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPI-DDLREG- 113 (159)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEEEEE------eCCEEEEEEEEcccccCchhhccccCCCCCCCCc-ccCCCC-
Confidence 456899999999998852 356666653 3456788999999999988776544321111110 111223
Q ss_pred cCceeeeecccccceEEEEE
Q 004430 329 FGVGFKTGAMRLGKDALVLT 348 (754)
Q Consensus 329 fGvGfKsAsmrLg~~v~V~S 348 (754)
|.|+...- +|.+++.+.+
T Consensus 114 -G~GL~Li~-~L~D~v~~~~ 131 (159)
T TIGR01924 114 -GLGLFLIE-TLMDEVEVYE 131 (159)
T ss_pred -ccCHHHHH-HhccEEEEEe
Confidence 77875432 4677777765
No 81
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=92.98 E-value=0.16 Score=50.12 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh
Q 004430 255 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 312 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (754)
+-.|+.|++.||+..+- ..|.|.+.. ..+...+.|.|+|.||+.+.+...+.
T Consensus 43 l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~------~~~~l~i~V~D~G~g~d~~~~~~~~~ 99 (161)
T PRK04069 43 MKIAVSEACTNAVQHAYKEDEVGEIHIRFEI------YEDRLEIVVADNGVSFDYETLKSKLG 99 (161)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEEEEE------ECCEEEEEEEECCcCCChHHhccccC
Confidence 45799999999998864 246666553 34578899999999999888766554
No 82
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=92.82 E-value=0.14 Score=56.38 Aligned_cols=71 Identities=24% Similarity=0.376 Sum_probs=53.0
Q ss_pred CHHHHHHHHHhccccc-CCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCce
Q 004430 254 WIFGAIAELVDNSRDA-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 254 ~pf~AIaELIDNA~DA-gAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvG 332 (754)
.++-++.|.|.|++.. +|+++.|.+.. .++.-.|.|.|||.|.+.+... | |.|
T Consensus 279 ~l~rivQEaltN~~rHa~A~~v~V~l~~------~~~~l~l~V~DnG~Gf~~~~~~------------------~--~~G 332 (365)
T COG4585 279 ALFRIVQEALTNAIRHAQATEVRVTLER------TDDELRLEVIDNGVGFDPDKEG------------------G--GFG 332 (365)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEEEE------cCCEEEEEEEECCcCCCccccC------------------C--Ccc
Confidence 4788999999999987 68999999985 3456899999999998765521 2 334
Q ss_pred eee---ecccccceEEEEEee
Q 004430 333 FKT---GAMRLGKDALVLTQT 350 (754)
Q Consensus 333 fKs---AsmrLg~~v~V~SK~ 350 (754)
+++ =...+|..+.|.|..
T Consensus 333 L~~mreRv~~lgG~l~i~S~~ 353 (365)
T COG4585 333 LLGMRERVEALGGTLTIDSAP 353 (365)
T ss_pred hhhHHHHHHHcCCEEEEEecC
Confidence 432 123478888888866
No 83
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=92.30 E-value=0.37 Score=58.47 Aligned_cols=101 Identities=23% Similarity=0.335 Sum_probs=67.0
Q ss_pred eeecCHHHHHHhhccccCCHHHHHHHHHhcccccCC--------------CccEEEEEecccccCCCCcCEEEEEeCCCC
Q 004430 236 FVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGHG 301 (754)
Q Consensus 236 ~~~v~p~fL~slst~hi~~pf~AIaELIDNA~DAgA--------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~G 301 (754)
...++..+|..|+ ..|..||-||+|.|- -.|.+.-.. .++.-.|.|.|||.|
T Consensus 422 ~telDksIlE~l~--------dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~------~gn~ivIev~DDG~G 487 (716)
T COG0643 422 DTELDKSILERLG--------DPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYH------EGNNIVIEVSDDGAG 487 (716)
T ss_pred CeeehHHHHHHhc--------ccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEc------CCCeEEEEEeeCCCC
Confidence 3567778887664 346789999999972 234444332 445667899999999
Q ss_pred CCHHhHHH-hhh-----------------------cccCCCCCCCCCcccccCcee---eeecccccceEEEEEeeCC
Q 004430 302 MTHQDVVR-MTY-----------------------FGHKQPDADDPNRIGRFGVGF---KTGAMRLGKDALVLTQTAD 352 (754)
Q Consensus 302 Mt~eeL~~-~l~-----------------------fG~S~k~~~~~~~IGqfGvGf---KsAsmrLg~~v~V~SK~~g 352 (754)
|+++.+.+ ++. -|+|.+. .-..+.--|||| |+..-+||..+.|.|+...
T Consensus 488 id~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~--~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~ 563 (716)
T COG0643 488 IDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAE--QVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGK 563 (716)
T ss_pred CCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcch--hhhcccCCccCHHHHHHHHHHcCCEEEEEecCCC
Confidence 99998764 332 2444442 223444458897 4556678888888886554
No 84
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=90.76 E-value=0.24 Score=57.30 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHH
Q 004430 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (754)
Q Consensus 255 pf~AIaELIDNA~DAg-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (754)
...++.|+++||+.+. +..|.|.+.. .++.-.|+|.|||.||+++
T Consensus 411 L~ril~nlL~NAiKha~~~~I~I~l~~------~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 411 LFRVCQEGLNNIVKHADASAVTLQGWQ------QDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEE------cCCEEEEEEEECCCCCCcC
Confidence 5678999999999874 4667777653 2345679999999999865
No 85
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=90.29 E-value=0.26 Score=57.42 Aligned_cols=47 Identities=17% Similarity=0.343 Sum_probs=36.6
Q ss_pred CHHHHHHHHHhcccccC-CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHh
Q 004430 254 WIFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 306 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAg-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee 306 (754)
+....+.|+|+||+.+. ++.|.|.+.. ..+.-.|.|.|||.||+++.
T Consensus 469 ~l~~il~ell~NA~kha~a~~i~V~~~~------~~~~~~l~V~D~G~Gi~~~~ 516 (569)
T PRK10600 469 HLLQIAREALSNALKHAQASEVVVTVAQ------NQNQVKLSVQDNGCGVPENA 516 (569)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEE------cCCEEEEEEEECCCCCCccc
Confidence 36788999999999864 5677777753 33456799999999998753
No 86
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=89.89 E-value=0.59 Score=56.82 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=43.7
Q ss_pred HHHHHHHHhcccccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-cccCCC
Q 004430 256 FGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP 318 (754)
Q Consensus 256 f~AIaELIDNA~DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k 318 (754)
..+|.-|||||.....+..+|.|.... ..+.-.+.|.|+|.|++.+++.+.|. |-...+
T Consensus 777 eQVLiNLleNA~Kyap~~s~I~I~~~~----~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~ 836 (890)
T COG2205 777 EQVLINLLENALKYAPPGSEIRINAGV----ERENVVFSVIDEGPGIPEGELERIFDKFYRGNK 836 (890)
T ss_pred HHHHHHHHHHHHhhCCCCCeEEEEEEE----ecceEEEEEEeCCCCCChhHHHHhhhhhhcCCC
Confidence 478999999999987654444444211 34567899999999999999999985 544333
No 87
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=89.52 E-value=0.2 Score=46.31 Aligned_cols=45 Identities=16% Similarity=0.538 Sum_probs=35.5
Q ss_pred Ccccccc-CC--CCCchhhhHHHHHHHhhcCCeEEEEEece------eEEEEeC
Q 004430 70 SHCFLSP-AP--ECSRDHNEWRRFLIYLQGRDMVAIAKFKF------WEFYILP 114 (754)
Q Consensus 70 ~~~~~~p-~~--~~~~~~~ew~~f~~~l~~~~~~~~~~~~~------~~~~~~~ 114 (754)
-.+++.+ .| .++.+...+.+|..||...+|+|||.++. ..|||+|
T Consensus 66 ~v~v~~~~~~~~~~~~~~~~~~~l~~Yl~~k~r~GVv~~~~~~~~~~~dlYl~P 119 (119)
T PF07744_consen 66 DVCVVALSSPESDSNSDRRPFQKLVDYLKSKQRAGVVSVGNSPSGQVKDLYLFP 119 (119)
T ss_dssp EEEEEEE-SSHHHHHHHHHHHHHTHHHHHHHTEEEEEEE--TT--S-EEEEEE-
T ss_pred eEEEEEEcCCcccCHHHHHHHHHHHHHHhhCCEEEEEecCCCCCCceeEEEEcC
Confidence 4455555 34 67888999999999999999999999995 8899998
No 88
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=89.34 E-value=0.39 Score=50.19 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEecccccCCCC-cCEEEEEeCCCCCCHH
Q 004430 255 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKD-IPMLSIIDDGHGMTHQ 305 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA-----t~V~I~I~~~~~~~~~~~-~~~L~I~DNG~GMt~e 305 (754)
+--++-||+.||+..++ ..|.|.+... ..+ ...++|+|||.|++.+
T Consensus 123 Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~-----~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 123 LGLIVHELVTNALKHAFLSRPGGEIRITLSRE-----GDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEc-----CCCCeEEEEEEECCCCCCCC
Confidence 34689999999999875 4577777641 112 3689999999998654
No 89
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=88.55 E-value=0.51 Score=52.56 Aligned_cols=71 Identities=17% Similarity=0.369 Sum_probs=51.1
Q ss_pred HHHHHHHHhcccccC--CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh-cccCCCCCCCCCcccccCce
Q 004430 256 FGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 332 (754)
Q Consensus 256 f~AIaELIDNA~DAg--At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~~~~~IGqfGvG 332 (754)
...|-.+|.||+..+ ..+|.|.+.. ....-.++|.|.|.|++++++.+.+. |-.-.+. +....|--|+|
T Consensus 344 tQVldNii~NA~KYsP~Gg~Itv~~~~------~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkA--RsR~~gGTGLG 415 (459)
T COG5002 344 TQVLDNIISNALKYSPDGGRITVSVKQ------RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKA--RSRKMGGTGLG 415 (459)
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEEEee------eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhh--hhhcCCCCchh
Confidence 467888999999885 4567776653 23356789999999999999999885 5443332 34566767888
Q ss_pred ee
Q 004430 333 FK 334 (754)
Q Consensus 333 fK 334 (754)
+.
T Consensus 416 La 417 (459)
T COG5002 416 LA 417 (459)
T ss_pred HH
Confidence 74
No 90
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=87.72 E-value=0.89 Score=52.08 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=39.6
Q ss_pred CHHHHHHHHHhcccccCC----CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhh
Q 004430 254 WIFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 311 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAgA----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l 311 (754)
.|.-.|-=||+||+-||- ....|.+.... ..+.-.+.|.|||.||+++......
T Consensus 350 ~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~----~~~~i~i~i~Dng~g~~~~~~~~~~ 407 (456)
T COG2972 350 DPKLVLQPLVENAIEHGIEPKRPGGSIAISAKK----QDDVIQISISDNGPGIDEEKLEGLS 407 (456)
T ss_pred CchHHHhHHHHHHHHHhcccCCCCCEEEEEEEE----cCCEEEEEEeeCCCCCChhHHHHHH
Confidence 578889999999999973 33445444311 2456778999999999998876654
No 91
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=87.68 E-value=1.1 Score=44.05 Aligned_cols=85 Identities=19% Similarity=0.191 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHhcccccCC------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcc
Q 004430 253 GWIFGAIAELVDNSRDAKA------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRI 326 (754)
Q Consensus 253 ~~pf~AIaELIDNA~DAgA------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~I 326 (754)
...-.|+.|++.|++.++- ..|.|.+.. ..+...++|+|.|.|+ +++...+.-+.... .....
T Consensus 39 ~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~------~~~~~~i~i~D~G~~~--~~~~~~~~~~~~~~---~~~~~ 107 (146)
T COG2172 39 ADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSL------DDGKLEIRIWDQGPGI--EDLEESLGPGDTTA---EGLQE 107 (146)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEE------cCCeEEEEEEeCCCCC--CCHHHhcCCCCCCC---ccccc
Confidence 3567999999999998842 345554443 3456889999999554 45555555442222 12233
Q ss_pred cccCceeeeecccccceEEEEEeeC
Q 004430 327 GRFGVGFKTGAMRLGKDALVLTQTA 351 (754)
Q Consensus 327 GqfGvGfKsAsmrLg~~v~V~SK~~ 351 (754)
| |.|| ....++.+++.+.....
T Consensus 108 ~--G~Gl-~l~~~~~D~~~~~~~~~ 129 (146)
T COG2172 108 G--GLGL-FLAKRLMDEFSYERSED 129 (146)
T ss_pred c--cccH-HHHhhhheeEEEEeccC
Confidence 3 6666 33445667777764333
No 92
>PRK13560 hypothetical protein; Provisional
Probab=87.48 E-value=0.57 Score=55.71 Aligned_cols=44 Identities=27% Similarity=0.437 Sum_probs=31.5
Q ss_pred HHHHHHHhcccccC-----CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHH
Q 004430 257 GAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (754)
Q Consensus 257 ~AIaELIDNA~DAg-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (754)
..|.+|+.||+++. +..|.|.+... ..+.-.|+|.|||+||+++
T Consensus 714 ~il~NLl~NAik~~~~~~~~~~i~i~~~~~-----~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 714 LIISELLSNALKHAFPDGAAGNIKVEIREQ-----GDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHHhhccCCCCceEEEEEEEc-----CCCEEEEEEEeCCCcCCcc
Confidence 47889999999973 23455555431 2345679999999999875
No 93
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=85.82 E-value=0.94 Score=53.61 Aligned_cols=51 Identities=18% Similarity=0.347 Sum_probs=38.7
Q ss_pred HHHHHHHHhcccccCC---------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhh
Q 004430 256 FGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 312 (754)
Q Consensus 256 f~AIaELIDNA~DAgA---------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (754)
-.++-.|+.||.+|.+ ..|.+..+. .++.-.+.|.|||.|.+.+...+++.
T Consensus 602 ~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~------~~g~i~v~V~DNGkG~p~e~r~r~~E 661 (712)
T COG5000 602 GQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDD------ADGRIVVDVIDNGKGFPRENRHRALE 661 (712)
T ss_pred HHHHHHHHHhHHHHhhhcccccCCcceEEEEEec------CCCeEEEEEecCCCCCChHHhhhhcc
Confidence 3688899999999842 124444442 45677899999999999999999875
No 94
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=84.31 E-value=1.7 Score=49.99 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=45.5
Q ss_pred CHHHHHHHHHhcccccCC---CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCC
Q 004430 254 WIFGAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQP 318 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAgA---t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k 318 (754)
.....+-.|+-||+||.. ..|+|.+.. ...+..+|.|.|||.|-+.+-+.+.+...+++|
T Consensus 564 ~ieQVlvNl~~NaldA~~h~~p~i~~~~~~-----~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK 626 (673)
T COG4192 564 SIEQVLVNLIVNALDASTHFAPWIKLIALG-----TEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSK 626 (673)
T ss_pred hHHHHHHHHHHHHHhhhccCCceEEEEeec-----CcccceEEEEecCCCCCchhHHHHhcCCccccc
Confidence 467889999999999964 445655542 134567899999999999998888887544444
No 95
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=81.27 E-value=2.2 Score=50.84 Aligned_cols=70 Identities=21% Similarity=0.267 Sum_probs=49.5
Q ss_pred eeeecCHHHHHHhhccccCCHHHHHHHHHhcccccCC---CccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhh
Q 004430 235 NFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 311 (754)
Q Consensus 235 ~~~~v~p~fL~slst~hi~~pf~AIaELIDNA~DAgA---t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l 311 (754)
..+++.+ |..+...-+ -.-..+..||.||+..+. ..|+|..+. ..+..++.|.|||.|++++-+.+.+
T Consensus 620 aei~i~~--lp~v~~d~~-~l~qv~~NLi~Naik~~~~e~~~i~I~~~r------~ed~~t~sV~dng~Gi~~a~~~riF 690 (750)
T COG4251 620 AEIRIAP--LPVVAADAT-QLGQVFQNLIANAIKFGGPENPDIEISAER------QEDEWTFSVRDNGIGIDPAYFERIF 690 (750)
T ss_pred ceEEecc--cceeecCHH-HHHHHHHHHHhhheecCCCCCCceEEeeec------cCCceEEEecCCCCCcCHHHHHHHH
Confidence 3344555 444433221 244677899999998864 567777665 4467899999999999999999987
Q ss_pred hc
Q 004430 312 YF 313 (754)
Q Consensus 312 ~f 313 (754)
.+
T Consensus 691 ~i 692 (750)
T COG4251 691 VI 692 (750)
T ss_pred HH
Confidence 63
No 96
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=79.05 E-value=2.2 Score=49.09 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCcCEEEEEeCCCCCCHH
Q 004430 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (754)
....+.+|+.||+.+.. ..+.|.+... ..+.-.|.|.|||.||+++
T Consensus 472 l~qv~~nll~NA~k~~~~~~i~i~~~~~-----~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHANASEIAVSCVTN-----PDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEEc-----CCCEEEEEEEECCcCcCCC
Confidence 45689999999998643 4566666531 1345679999999999863
No 98
>PRK13559 hypothetical protein; Provisional
Probab=78.90 E-value=1.9 Score=46.60 Aligned_cols=47 Identities=15% Similarity=0.053 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCcCEEEEEeCCCCCCHH
Q 004430 255 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (754)
Q Consensus 255 pf~AIaELIDNA~DAgA-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (754)
+..++.|||.||+.+++ ..|.|.+... ...+...|.+.|||.||+.+
T Consensus 268 l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~----~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 268 LGLVLHELAVNAIKHGALSADQGRISISWKPS----PEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHhHHHhccccCCCcEEEEEEEec----CCCCeEEEEEECCCCCCCCC
Confidence 45789999999999853 3566665211 13345688999999997654
No 99
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=74.25 E-value=4.2 Score=45.31 Aligned_cols=63 Identities=22% Similarity=0.414 Sum_probs=43.9
Q ss_pred ccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCceeeee--cc-cccceE
Q 004430 268 DAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTG--AM-RLGKDA 344 (754)
Q Consensus 268 DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGfKsA--sm-rLg~~v 344 (754)
-|||++|.|.+.. ..+.-.+.|.|||.|++-.+...-+ .|+|+.-- -| .+|..+
T Consensus 374 Ha~Atrv~ill~~------~~d~vql~vrDnG~GF~~~~~~~~~-----------------~GiGLRNMrERma~~GG~~ 430 (459)
T COG4564 374 HAGATRVTILLQQ------MGDMVQLMVRDNGVGFSVKEALQKR-----------------HGIGLRNMRERMAHFGGEL 430 (459)
T ss_pred hcCCeEEEEEecc------CCcceEEEEecCCCCccchhhccCc-----------------cccccccHHHHHHHhCceE
Confidence 3589999998874 4567789999999999887753321 47777521 01 267888
Q ss_pred EEEEeeCCC
Q 004430 345 LVLTQTADS 353 (754)
Q Consensus 345 ~V~SK~~g~ 353 (754)
.|.|-..|+
T Consensus 431 ~v~s~p~GT 439 (459)
T COG4564 431 EVESSPQGT 439 (459)
T ss_pred EEEecCCCc
Confidence 888866654
No 100
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=59.58 E-value=2 Score=34.07 Aligned_cols=34 Identities=24% Similarity=0.735 Sum_probs=22.9
Q ss_pred CCCCceeeCccchhhccCCC-CCC---CCCCCCCceec
Q 004430 641 KPDQEWVQCNKCRKWRMLDP-GFD---TKSLPVEWFCY 674 (754)
Q Consensus 641 ~~~~~WVQCd~C~KWR~Lp~-~~~---~~~lp~~W~C~ 674 (754)
.....|||||.|.+|-...= +.. .......|+|.
T Consensus 9 ~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~ 46 (51)
T PF00628_consen 9 DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCP 46 (51)
T ss_dssp CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSH
T ss_pred CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECc
Confidence 34679999999999988762 221 12233489985
No 101
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=58.42 E-value=14 Score=41.12 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcccccCCC----ccEEEEEeccc------ccCCCCcCEEEEEeCCCCCCHHhHHHhhh
Q 004430 255 IFGAIAELVDNSRDAKAT----KLEISIESIYF------KKAGKDIPMLSIIDDGHGMTHQDVVRMTY 312 (754)
Q Consensus 255 pf~AIaELIDNA~DAgAt----~V~I~I~~~~~------~~~~~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (754)
+..++-.||.||..|.+. .=.|.+..... ..-..-.-.|.|.|||.|++.+-....|.
T Consensus 242 liQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~ 309 (363)
T COG3852 242 LIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFY 309 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccc
Confidence 568999999999999762 12233322100 00001123578999999999887777765
No 102
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=57.28 E-value=13 Score=42.16 Aligned_cols=46 Identities=28% Similarity=0.394 Sum_probs=36.4
Q ss_pred CHHHHHHHHHhccc-ccCCCccEEEEEecccccCCCCcCEEEEEeCCCCCCHH
Q 004430 254 WIFGAIAELVDNSR-DAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (754)
Q Consensus 254 ~pf~AIaELIDNA~-DAgAt~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (754)
.++-..-|++.|=. -|.|+.|+|.+-. +++.-.+.|+|||.|++..
T Consensus 410 TLyRl~QE~LNNI~KHA~AS~V~i~l~~------~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 410 TLYRLCQELLNNICKHADASAVTIQLWQ------QDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred eHHHHHHHHHHHHHhccccceEEEEEee------CCcEEEEEEecCCcCCCCC
Confidence 37788899999977 4689999998763 3445789999999998653
No 103
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=44.85 E-value=40 Score=41.72 Aligned_cols=45 Identities=18% Similarity=0.429 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcccc-c-C--CCccEEEEEecccccCCCCcCEEEEEeCCCCCCHHhH
Q 004430 255 IFGAIAELVDNSRD-A-K--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 307 (754)
Q Consensus 255 pf~AIaELIDNA~D-A-g--At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL 307 (754)
++..+-|++.||.| . + -..|.+.|+ .+...+.|.+||.|+.-+..
T Consensus 54 l~ki~dEilvNaadk~rd~~m~~i~v~i~--------~e~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 54 LYKIFDEILVNAADKQRDPKMNTIKVTID--------KEKNEISVYNNGKGIPVTIH 102 (842)
T ss_pred HHHHHHHHhhcccccccCCCcceeEEEEc--------cCCCEEEEEeCCCcceeeec
Confidence 56778999999999 2 2 245666665 35689999999999986654
No 104
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=40.71 E-value=25 Score=41.11 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=39.7
Q ss_pred eecCHHHHHHhhccccCCHHHHHHHHHhcccccCC------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHH
Q 004430 237 VRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (754)
Q Consensus 237 ~~v~p~fL~slst~hi~~pf~AIaELIDNA~DAgA------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (754)
+.+++++.. .++ |.-.|-=||.||+..|- -.|.|.+.. .+..-.+.|+|||.|+.++
T Consensus 445 i~id~~l~~----~~i--P~filQPLVENAIKHG~~~~~~~g~V~I~V~~------~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 445 IDIDEELRQ----VQI--PSFILQPLVENAIKHGISQLKDTGRVTISVEK------EDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred EecCHHHhh----ccC--chhhhhHHHHHHHHhcccchhcCCceEEEEEE------eCCeEEEEEecCCCCcCCC
Confidence 455555443 222 55567889999998863 457777664 3345789999999999986
No 105
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=39.20 E-value=16 Score=42.55 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCcCEEEEEeCCC---CCCHHhHHHhhhcccCCCCC----
Q 004430 253 GWIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGH---GMTHQDVVRMTYFGHKQPDA---- 320 (754)
Q Consensus 253 ~~pf~AIaELIDNA~DAg-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~---GMt~eeL~~~l~fG~S~k~~---- 320 (754)
..|..||+|+|-||+=.. +..|+|.+. ...|.|.-.|. ||+++++.+- .|..+-
T Consensus 269 dyP~~alREai~NAv~HRDYs~~~~~v~I~iy----------dDRieI~NPGgl~~gi~~~~l~~~----~s~~RNp~LA 334 (467)
T COG2865 269 DYPLEALREAIINAVIHRDYSIRGRNVHIEIY----------DDRIEITNPGGLPPGITPEDLLKG----RSKSRNPVLA 334 (467)
T ss_pred cCCHHHHHHHHHHHHHhhccccCCCceEEEEE----------CCeEEEECCCCCCCCCChhHcccC----CCcccCHHHH
Confidence 358899999999999542 347777775 36899998886 8888876553 221110
Q ss_pred ---CCCCcccccCceeee
Q 004430 321 ---DDPNRIGRFGVGFKT 335 (754)
Q Consensus 321 ---~~~~~IGqfGvGfKs 335 (754)
.+...+-++|.|+..
T Consensus 335 ~~l~~~~liE~~GSGi~r 352 (467)
T COG2865 335 KVLRDMGLIEERGSGIRR 352 (467)
T ss_pred HHHHHhhhHHHhCccHHH
Confidence 135677789999853
No 106
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=36.57 E-value=16 Score=34.62 Aligned_cols=17 Identities=24% Similarity=0.821 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 004430 82 RDHNEWRRFLIYLQGRD 98 (754)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (754)
+...+|++||||..+++
T Consensus 84 ~s~~~WdRFMRFmeRYA 100 (109)
T TIGR03047 84 KSEDEWDRFMRFMERYA 100 (109)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 107
>PF03912 Psb28: Psb28 protein; InterPro: IPR005610 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein Psb28 (PsbW) found in PSII, where it is a subunit of the oxygen-evolving complex. Psb28 appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of Psb28, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 1 Psb28.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0016020 membrane; PDB: 2KVO_A.
Probab=35.42 E-value=14 Score=34.90 Aligned_cols=15 Identities=27% Similarity=0.831 Sum_probs=12.8
Q ss_pred hhhHHHHHHHhhcCC
Q 004430 84 HNEWRRFLIYLQGRD 98 (754)
Q Consensus 84 ~~ew~~f~~~l~~~~ 98 (754)
..+|++||||+.+++
T Consensus 86 ~~~WdRFMRFMeRYA 100 (108)
T PF03912_consen 86 EEEWDRFMRFMERYA 100 (108)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 469999999998764
No 108
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=35.13 E-value=16 Score=34.64 Aligned_cols=17 Identities=12% Similarity=0.378 Sum_probs=13.9
Q ss_pred chhhhHHHHHHHhhcCC
Q 004430 82 RDHNEWRRFLIYLQGRD 98 (754)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (754)
+...+|++||||..+++
T Consensus 91 ~s~~~WdRFMRFMeRYA 107 (113)
T PRK13610 91 NSEEAFERFMRFASRYA 107 (113)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998775
No 109
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=34.47 E-value=18 Score=34.31 Aligned_cols=17 Identities=29% Similarity=0.794 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 004430 82 RDHNEWRRFLIYLQGRD 98 (754)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (754)
+...+|++||||..+++
T Consensus 85 ~s~~~WdRFMRFMeRYA 101 (111)
T PLN00039 85 RSPREWDRFMRFMERYA 101 (111)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 110
>PRK13612 photosystem II reaction center protein Psb28; Provisional
Probab=33.45 E-value=20 Score=34.23 Aligned_cols=17 Identities=24% Similarity=0.792 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 004430 82 RDHNEWRRFLIYLQGRD 98 (754)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (754)
+...+|++||||..+++
T Consensus 87 ~s~~~WdRFMRFMeRYA 103 (113)
T PRK13612 87 KSEQEWDRFMRFMERYA 103 (113)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 111
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=32.79 E-value=20 Score=33.63 Aligned_cols=17 Identities=29% Similarity=0.729 Sum_probs=14.1
Q ss_pred chhhhHHHHHHHhhcCC
Q 004430 82 RDHNEWRRFLIYLQGRD 98 (754)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (754)
+...+|++||||..+++
T Consensus 80 ~s~~~wdRFMRFmeRYA 96 (104)
T PRK13611 80 ETEAEWDRFLRFMERFS 96 (104)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 35679999999998775
No 112
>PF14501 HATPase_c_5: GHKL domain
Probab=32.78 E-value=74 Score=28.50 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=27.4
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCcCEEEEEeCCCC
Q 004430 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHG 301 (754)
Q Consensus 254 ~pf~AIaELIDNA~DAg-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~G 301 (754)
++-..|.-|+|||++|. ...|.|.+.. ..+...|.|.-...+
T Consensus 5 dl~~il~nlldNAiea~~~~~~~~~I~i~~~~------~~~~~~i~i~N~~~~ 51 (100)
T PF14501_consen 5 DLCRILGNLLDNAIEACKKYEDKRFISISIRE------ENGFLVIIIENSCEK 51 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEe------cCCEEEEEEEECCCC
Confidence 35578999999999983 3456666653 334556666665444
No 113
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=32.26 E-value=21 Score=34.03 Aligned_cols=17 Identities=18% Similarity=0.729 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 004430 82 RDHNEWRRFLIYLQGRD 98 (754)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (754)
+...+|++||||..+++
T Consensus 87 ~s~~~WdRFMRFMeRYA 103 (113)
T CHL00128 87 KNPEAWDRFMRFMERYA 103 (113)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 114
>cd00594 KU Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen recognized by the sera of patients with an autoimmunity disease. In eukaryotes, the Ku heterodimer contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by non-homologous end-joining. The bacterial Ku homologs does not contain the conserved N-terminal extension that is present in the eukaryotic Ku protein.
Probab=24.86 E-value=78 Score=33.58 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=50.5
Q ss_pred CCccccccccccccee---eccCCCccccccCCCCCchhhhHHHHHHHhhcCCeEEEEEecee-----EEEEeCCC
Q 004430 49 LPHHWNVNDIVPTSKI---ILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFW-----EFYILPPD 116 (754)
Q Consensus 49 ~p~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~ew~~f~~~l~~~~~~~~~~~~~~-----~~~~~~~~ 116 (754)
-+..+.|.+|+|.+-+ -+.+.++++. |.........--.-+.+=|...++|||+++-.- .|..|-|.
T Consensus 87 ~~~~l~ilgF~~~~~i~~~~~~~~s~~l~-P~~~~~~s~~af~aL~~am~~~~kvai~r~v~r~~~~p~l~aL~P~ 161 (272)
T cd00594 87 TSKGLDILGFVPASEIPPYYFDKESYYLV-PDDSDKGSEKAFSALRRALLEKDKVAIARYVLRRNSRPRLVALRPQ 161 (272)
T ss_pred CCCeEEEEeEechHhCCcceecCCcEEEE-cCCCCcccHHHHHHHHHHHHHcCcEEEEEEEEcCCCCcEEEEEecc
Confidence 4567889999999988 3555566666 777555666677888899999999999998654 36666565
No 115
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=24.33 E-value=34 Score=37.07 Aligned_cols=30 Identities=20% Similarity=0.772 Sum_probs=22.9
Q ss_pred CceeeCcc--ch-hhccCC-CCCCCCCCCCCceec
Q 004430 644 QEWVQCNK--CR-KWRMLD-PGFDTKSLPVEWFCY 674 (754)
Q Consensus 644 ~~WVQCd~--C~-KWR~Lp-~~~~~~~lp~~W~C~ 674 (754)
..-|.||. |. .|=+++ -++. ..-.++|||.
T Consensus 230 g~Mi~CDn~~C~~eWFH~~CVGL~-~~PkgkWyC~ 263 (274)
T KOG1973|consen 230 GKMIGCDNPGCPIEWFHFTCVGLK-TKPKGKWYCP 263 (274)
T ss_pred ccccccCCCCCCcceEEEeccccc-cCCCCcccch
Confidence 37899996 99 999998 4554 3445789996
No 116
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=23.64 E-value=36 Score=29.57 Aligned_cols=23 Identities=22% Similarity=0.570 Sum_probs=14.3
Q ss_pred CCCCCceeeCccchhhccCCCCC
Q 004430 640 YKPDQEWVQCNKCRKWRMLDPGF 662 (754)
Q Consensus 640 ~~~~~~WVQCd~C~KWR~Lp~~~ 662 (754)
|..-..+|||+.|..|..+.+.+
T Consensus 23 Y~~GvViv~C~gC~~~HlIaDnL 45 (66)
T PF05180_consen 23 YHKGVVIVQCPGCKNRHLIADNL 45 (66)
T ss_dssp HHTSEEEEE-TTS--EEES--SS
T ss_pred HhCCeEEEECCCCcceeeehhhh
Confidence 44455899999999999999875
No 117
>smart00559 Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen. This is a single stranded DNA- and ATP-depedent helicase that has a role in chromosome translocation. This is a domain of unknown function C-terminal to its von Willebrand factor A domain, that also occurs in bacterial hypothetical proteins.
Probab=23.11 E-value=90 Score=30.26 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=46.5
Q ss_pred Cccccccccccccee-e--ccCCCccccccCCCC-CchhhhHHHHHHHhhcCCeEEEEEece-----eEEEEeCCC
Q 004430 50 PHHWNVNDIVPTSKI-I--LDGMSHCFLSPAPEC-SRDHNEWRRFLIYLQGRDMVAIAKFKF-----WEFYILPPD 116 (754)
Q Consensus 50 p~~~~~~~~~~~~~~-~--~~~~~~~~~~p~~~~-~~~~~ew~~f~~~l~~~~~~~~~~~~~-----~~~~~~~~~ 116 (754)
+..+.|.+|+|.+-+ . +.++++.+. |.+.. .....--.-+.+=|...++||||++-. -.+-.|-|.
T Consensus 35 ~~~l~ilgF~~~~~i~~~~~~~~s~~i~-P~~~~~~~s~~a~~aL~~am~~~~~~aiar~v~r~~~~p~l~aL~P~ 109 (140)
T smart00559 35 EPGLELLGFKPLSSLPPYYFLRPSYFLV-PDDKSVIGSTKAFSALVEALLETDKIAIARYTLRTKSNPRLVALRPY 109 (140)
T ss_pred CCeEEEEeecChHHCCHhHccCCcEEEe-eCCcccchhHHHHHHHHHHHHhcCCEEEEEEEEcCCCCCEEEEEEee
Confidence 578899999999988 2 445556566 77753 224445556777789999999999932 456666665
Done!