Citrus Sinensis ID: 004432
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 754 | 2.2.26 [Sep-21-2011] | |||||||
| Q14149 | 939 | MORC family CW-type zinc | yes | no | 0.531 | 0.427 | 0.317 | 5e-48 | |
| Q8BMD7 | 928 | MORC family CW-type zinc | no | no | 0.583 | 0.474 | 0.310 | 4e-45 | |
| Q8TE76 | 937 | MORC family CW-type zinc | no | no | 0.545 | 0.438 | 0.305 | 1e-41 | |
| Q8C5W4 | 1022 | MORC family CW-type zinc | no | no | 0.328 | 0.242 | 0.292 | 3e-23 | |
| Q9Y6X9 | 1032 | MORC family CW-type zinc | no | no | 0.331 | 0.242 | 0.297 | 3e-23 | |
| Q69ZX6 | 1030 | MORC family CW-type zinc | no | no | 0.331 | 0.242 | 0.294 | 7e-23 | |
| Q9WVL5 | 950 | MORC family CW-type zinc | no | no | 0.346 | 0.274 | 0.275 | 2e-22 | |
| Q86VD1 | 984 | MORC family CW-type zinc | no | no | 0.538 | 0.412 | 0.217 | 2e-20 |
| >sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3 | Back alignment and function desciption |
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Score = 193 bits (490), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 146/460 (31%), Positives = 232/460 (50%), Gaps = 59/460 (12%)
Query: 241 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGH 300
P +L T +H+ W F A+AEL+DN+ D +I I+ K D L+ D+G+
Sbjct: 16 PKFLHTNSTSHT-WPFSAVAELIDNAYDPDVNAKQIWID----KTVINDHICLTFTDNGN 70
Query: 301 GMTHQDVVRMTYFGHKQPDADDPNR-IGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFL 359
GMT + +M FG + + +G +G GFK+G+MRLGKDA+V T+ +S S+ L
Sbjct: 71 GMTSDKLHKMLSFGFSDKVTMNGHVPVGLYGNGFKSGSMRLGKDAIVFTKNGESMSVGLL 130
Query: 360 SQSLNQ--GKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFN--KYLIG 415
SQ+ + +++ +PIV++ + Q + L A +K +L +I E S F+ + L+
Sbjct: 131 SQTYLEVIKAEHVVVPIVAFNKHRQMINL-------AESKASLAAILEHSLFSTEQKLLA 183
Query: 416 EKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDI-LIRSRRIRSRPGQ 474
E + K GT+I IWNL + + E+D + D+ I ++ + +
Sbjct: 184 ELDAIIGKK--GTRIIIWNLRSYKN--ATEFDFEKDKYDIRIPEDLDEITGKKGYKKQER 239
Query: 475 ISQKVP-LDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGI----IMGK 529
+ Q P DYSLR+Y +++L PRM+I ++G V+++ ++KSL +E + + K
Sbjct: 240 MDQIAPESDYSLRAYCSILYLKPRMQIILRGQKVKTQLVSKSL--AYIERDVYRPKFLSK 297
Query: 530 SAHLTLGRCQLEWEQMNC------GIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDV 583
+ +T G NC GI +Y RLI+AY++VG + + G GV+G+I
Sbjct: 298 TVRITFG--------FNCRNKDHYGIMMYHRNRLIKAYEKVGCQLRANNMGVGVVGII-- 347
Query: 584 SDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWD------NKFDSLNVVKDG 637
E N L H NKQ F Y LG+ ++YW+ N LN+ +
Sbjct: 348 -----ECNFLKPTH-NKQDFDYTNEYRLTITALGEKLNDYWNEMKVKKNTEYPLNLPVED 401
Query: 638 ALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP 677
+PDQ WVQC+ C KWR L G D LP +W+C P
Sbjct: 402 IQKRPDQTWVQCDACLKWRKLPDGMD--QLPEKWYCSNNP 439
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Homo sapiens (taxid: 9606) |
| >sp|Q8BMD7|MORC4_MOUSE MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q8C5W4|MOR2B_MOUSE MORC family CW-type zinc finger protein 2B OS=Mus musculus GN=Morc2b PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9Y6X9|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q69ZX6|MOR2A_MOUSE MORC family CW-type zinc finger protein 2A OS=Mus musculus GN=Morc2a PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9WVL5|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q86VD1|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 754 | ||||||
| 255583448 | 754 | zinc finger protein, putative [Ricinus c | 0.953 | 0.953 | 0.666 | 0.0 | |
| 359476999 | 760 | PREDICTED: MORC family CW-type zinc fing | 0.958 | 0.951 | 0.626 | 0.0 | |
| 296088514 | 596 | unnamed protein product [Vitis vinifera] | 0.746 | 0.944 | 0.697 | 0.0 | |
| 356495297 | 692 | PREDICTED: MORC family CW-type zinc fing | 0.770 | 0.839 | 0.622 | 0.0 | |
| 222635901 | 800 | hypothetical protein OsJ_22008 [Oryza sa | 0.923 | 0.87 | 0.509 | 0.0 | |
| 115468994 | 792 | Os06g0622000 [Oryza sativa Japonica Grou | 0.923 | 0.878 | 0.509 | 0.0 | |
| 357484261 | 577 | MORC family CW-type zinc finger protein | 0.734 | 0.960 | 0.634 | 0.0 | |
| 218198566 | 766 | hypothetical protein OsI_23737 [Oryza sa | 0.877 | 0.864 | 0.472 | 0.0 | |
| 242096394 | 758 | hypothetical protein SORBIDRAFT_10g02439 | 0.879 | 0.874 | 0.448 | 1e-177 | |
| 413954785 | 785 | hypothetical protein ZEAMMB73_569962 [Ze | 0.858 | 0.824 | 0.476 | 1e-175 |
| >gi|255583448|ref|XP_002532483.1| zinc finger protein, putative [Ricinus communis] gi|223527808|gb|EEF29907.1| zinc finger protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 984 bits (2544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/737 (66%), Positives = 573/737 (77%), Gaps = 18/737 (2%)
Query: 23 DSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKI-ILDGMSHCFLSPAPECS 81
D + Y+ L KD KPICRT+CLNPP +P WN++DI+P SK+ I DG+ HCFL PA E +
Sbjct: 31 DCKLYVFLMKDGKPICRTQCLNPPAEVPQSWNIHDIIPRSKMNIYDGLPHCFLRPAAENN 90
Query: 82 RDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRG 141
RD NEW+RFL YLQ R+ V IAKF+F FYILPP + NF++++VAY+ EKT N + +
Sbjct: 91 RDQNEWQRFLSYLQKRNSVGIAKFEFCNFYILPPAEAYNFSHVKVAYR-EKTSNKYSHQK 149
Query: 142 HGES----GRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSP 197
H ES +CQ V + T+P + +R N ++A EDN +
Sbjct: 150 HCESVVDTTEACQFV--GCNLDPVETCGTVPSQSAERFTARKNVHMKASDQGIIEDNETS 207
Query: 198 VLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFG 257
+KFS +GD L E TI R + RAVKQ GPL +N+VRADPSYLQTLGQAHSGWIFG
Sbjct: 208 YVKFSQSIGDPLGHEPTI----RHQRRAVKQDGPLMENYVRADPSYLQTLGQAHSGWIFG 263
Query: 258 AIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQ 317
AIAELVDNSRDAKA++L+I IE+IY K+AGKDIPMLSIIDDGHGMTHQ+V+RMT FGHKQ
Sbjct: 264 AIAELVDNSRDAKASRLDILIETIYSKRAGKDIPMLSIIDDGHGMTHQEVMRMTCFGHKQ 323
Query: 318 PDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSY 377
PD DD +RIGRFGVGFKTGAMRLG+DALVLTQT+ SRSIAFLSQSLN+G DNLEIPIVSY
Sbjct: 324 PDVDDLDRIGRFGVGFKTGAMRLGRDALVLTQTSCSRSIAFLSQSLNEGNDNLEIPIVSY 383
Query: 378 YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 437
RKGQFME+DT VQSEA AK NLK+IKE S F+KYLIGEKAGLF K TGTQIYIWNLD+
Sbjct: 384 RRKGQFMEVDTNVQSEALAKNNLKAIKELSHFDKYLIGEKAGLFHGKHTGTQIYIWNLDE 443
Query: 438 WGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPR 497
WGS YCL+W GLNG SSFHQGDILIRS+R+RSRPGQ++QKVPLDYSLRSYLEVIFLVPR
Sbjct: 444 WGSGYCLDWTTGLNGWSSFHQGDILIRSKRVRSRPGQMTQKVPLDYSLRSYLEVIFLVPR 503
Query: 498 MKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRL 557
M+IYVQGSLV+SRPLAKSL+ TC T I+GK HLTLGRCQLEWEQ N GIFLYWHGRL
Sbjct: 504 MRIYVQGSLVKSRPLAKSLSMTCEATDNILGKRVHLTLGRCQLEWEQGNSGIFLYWHGRL 563
Query: 558 IEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLG 617
IEAYKRVGGM H G G GVIGVIDV+DLMD GNG VWVH+NKQGF DCEPY RLE WLG
Sbjct: 564 IEAYKRVGGMAH-GKVGLGVIGVIDVTDLMDNGNGRVWVHSNKQGFQDCEPYVRLENWLG 622
Query: 618 KVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP 677
K DEYWDN FD++ + K G LYKPDQEWVQC++CRKWR+L G+D K+L +EWFCYM+P
Sbjct: 623 KKVDEYWDNNFDTVPLKKGGVLYKPDQEWVQCDRCRKWRILCAGYDRKNLLLEWFCYMEP 682
Query: 678 FEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMSSDSIGLSRMAEDS 737
F+G C+ PEQK GV+TVS +R+GYD RE++ E A I E S + + ++
Sbjct: 683 FQGSCETPEQKAKHGVITVSTRRSGYD-REDA---EDDAIITSEGNSDEDVDQTKKVGKQ 738
Query: 738 SPLKRIRRGLPRACKKV 754
KRIR+GLPRACKKV
Sbjct: 739 G-FKRIRKGLPRACKKV 754
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476999|ref|XP_002263942.2| PREDICTED: MORC family CW-type zinc finger protein 2B-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|296088514|emb|CBI37505.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356495297|ref|XP_003516515.1| PREDICTED: MORC family CW-type zinc finger protein 3-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|222635901|gb|EEE66033.1| hypothetical protein OsJ_22008 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|115468994|ref|NP_001058096.1| Os06g0622000 [Oryza sativa Japonica Group] gi|51090841|dbj|BAD35369.1| Zinc finger CW-type coiled-coil domain protein 3-like [Oryza sativa Japonica Group] gi|113596136|dbj|BAF20010.1| Os06g0622000 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|357484261|ref|XP_003612418.1| MORC family CW-type zinc finger protein [Medicago truncatula] gi|355513753|gb|AES95376.1| MORC family CW-type zinc finger protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|218198566|gb|EEC80993.1| hypothetical protein OsI_23737 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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| >gi|242096394|ref|XP_002438687.1| hypothetical protein SORBIDRAFT_10g024390 [Sorghum bicolor] gi|241916910|gb|EER90054.1| hypothetical protein SORBIDRAFT_10g024390 [Sorghum bicolor] | Back alignment and taxonomy information |
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| >gi|413954785|gb|AFW87434.1| hypothetical protein ZEAMMB73_569962 [Zea mays] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 754 | ||||||
| UNIPROTKB|F1MFY1 | 960 | MORC3 "Uncharacterized protein | 0.580 | 0.456 | 0.326 | 1.3e-48 | |
| ZFIN|ZDB-GENE-030131-1502 | 1079 | morc3a "MORC family CW-type zi | 0.645 | 0.451 | 0.301 | 1.9e-48 | |
| UNIPROTKB|F1PFJ7 | 939 | MORC3 "Uncharacterized protein | 0.575 | 0.462 | 0.323 | 5e-47 | |
| UNIPROTKB|F1SGX2 | 940 | MORC3 "Uncharacterized protein | 0.578 | 0.463 | 0.315 | 6e-46 | |
| UNIPROTKB|Q14149 | 939 | MORC3 "MORC family CW-type zin | 0.570 | 0.457 | 0.313 | 5.2e-45 | |
| UNIPROTKB|F1P2D9 | 926 | MORC3 "Uncharacterized protein | 0.637 | 0.519 | 0.293 | 4.6e-43 | |
| ZFIN|ZDB-GENE-040801-98 | 763 | morc3b "MORC family CW-type zi | 0.561 | 0.554 | 0.323 | 1.8e-41 | |
| UNIPROTKB|Q8TE76 | 937 | MORC4 "MORC family CW-type zin | 0.580 | 0.467 | 0.301 | 9.5e-39 | |
| UNIPROTKB|F1P705 | 898 | MORC4 "Uncharacterized protein | 0.563 | 0.473 | 0.298 | 3e-38 | |
| MGI|MGI:1922996 | 928 | Morc4 "microrchidia 4" [Mus mu | 0.542 | 0.440 | 0.304 | 7.2e-35 |
| UNIPROTKB|F1MFY1 MORC3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 529 (191.3 bits), Expect = 1.3e-48, P = 1.3e-48
Identities = 159/487 (32%), Positives = 248/487 (50%)
Query: 241 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGH 300
P +L T +H+ W F A+AEL+DN+ D +I I+ K D L+ D+G+
Sbjct: 26 PKFLHTNSTSHT-WPFSAVAELIDNAYDPDVNAKQIWID----KTVINDCICLTFTDNGN 80
Query: 301 GMTHQDVVRMTYFGHKQP-DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFL 359
GMT + +M FG + +D +G +G GFK+G+MRLGKDA+V T+ +S S+ FL
Sbjct: 81 GMTSDKLHKMLSFGFSEKVTMNDHVPVGLYGNGFKSGSMRLGKDAMVFTKNEESMSVGFL 140
Query: 360 SQS-LNQGK-DNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNK--YLIG 415
SQ+ L K +++ +PIVS+ ++ LD+ +S+A+ L +I E S F+K L+
Sbjct: 141 SQTYLEVIKAEHVVVPIVSFNKQDIRQVLDST-ESKAS----LAAILEHSLFSKEQQLLA 195
Query: 416 EKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILXXXXXXXXXPGQ- 474
E + K GT+I IWNL + S E+D + D+ +
Sbjct: 196 ELDAIIGKK--GTRIIIWNLRSYKS--ATEFDFDKDKYDIRIPEDLDETAGKKGYKKQER 251
Query: 475 ISQKVP-LDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSL---NKTCVETGIIMGKS 530
+ Q P DYSLR+Y +++L PRM+I ++G V+++ ++KSL + + K+
Sbjct: 252 MDQIAPESDYSLRAYCSILYLKPRMQIILRGQKVKTQLVSKSLAYIERDIYRPKFLTNKT 311
Query: 531 AHLTLG-RCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDE 589
+T G C+ + + GI +Y RLI+AY++VG + + G GV+G+ID L
Sbjct: 312 VRITFGFNCR---NKDHYGIMMYHRNRLIKAYEKVGCQLRANNMGVGVVGIIDCYFLKP- 367
Query: 590 GNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDN-KFDS-----LNVVKDGALYKPD 643
HN KQ F Y LG ++YW+ K LN+ + +PD
Sbjct: 368 ------THN-KQDFDYTNEYRLTITALGDKLNDYWNEMKVKKHAEYPLNLPVEDIQKRPD 420
Query: 644 QEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP---FEGLCDLPEQKVDAGVVTVSAKR 700
Q WVQC+ C KWR L G D LP +W+C P F CD+PE+ D VV + ++
Sbjct: 421 QTWVQCDSCLKWRKLPDGID--QLPEKWYCSNNPDPQFRN-CDVPEEPEDEDVVHPTYEK 477
Query: 701 TGYDSRE 707
T Y ++
Sbjct: 478 T-YKKKD 483
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| ZFIN|ZDB-GENE-030131-1502 morc3a "MORC family CW-type zinc finger 3a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PFJ7 MORC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1SGX2 MORC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q14149 MORC3 "MORC family CW-type zinc finger protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1P2D9 MORC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-040801-98 morc3b "MORC family CW-type zinc finger 3b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q8TE76 MORC4 "MORC family CW-type zinc finger protein 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P705 MORC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| MGI|MGI:1922996 Morc4 "microrchidia 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 754 | |||
| pfam13589 | 134 | pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr | 5e-22 | |
| pfam07496 | 50 | pfam07496, zf-CW, CW-type Zinc Finger | 2e-11 | |
| COG0323 | 638 | COG0323, MutL, DNA mismatch repair enzyme (predict | 8e-07 | |
| TIGR00585 | 312 | TIGR00585, mutl, DNA mismatch repair protein MutL | 2e-06 | |
| PRK00095 | 617 | PRK00095, mutL, DNA mismatch repair protein; Revie | 3e-06 | |
| pfam02518 | 111 | pfam02518, HATPase_c, Histidine kinase-, DNA gyras | 2e-04 | |
| cd00075 | 103 | cd00075, HATPase_c, Histidine kinase-like ATPases; | 3e-04 | |
| PRK05218 | 613 | PRK05218, PRK05218, heat shock protein 90; Provisi | 5e-04 | |
| COG0326 | 623 | COG0326, HtpG, Molecular chaperone, HSP90 family [ | 0.002 |
| >gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 5e-22
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 256 FGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGH 315
AIAEL+DNS DA AT ++ISI+ + +SI D+G GM+++++ G
Sbjct: 4 EDAIAELIDNSIDADATNVKISIDPD------RGEDGISIEDNGGGMSYEELRNALKLGR 57
Query: 316 KQPDADDPNR-IGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI 374
+ + + +GR G+G K ++ LG+ V ++ S L + ++P
Sbjct: 58 SSKEGERDSTTLGRKGIGMKLASLSLGRKLTVTSKKEGESSTLTLDLDDIDKEGEWDLPE 117
Query: 375 V 375
+
Sbjct: 118 L 118
|
This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 134 |
| >gnl|CDD|219431 pfam07496, zf-CW, CW-type Zinc Finger | Back alignment and domain information |
|---|
| >gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
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| >gnl|CDD|233035 TIGR00585, mutl, DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
| >gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
| >gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 754 | |||
| KOG1845 | 775 | consensus MORC family ATPases [Cell cycle control, | 99.95 | |
| COG0326 | 623 | HtpG Molecular chaperone, HSP90 family [Posttransl | 99.9 | |
| PTZ00130 | 814 | heat shock protein 90; Provisional | 99.89 | |
| PRK05218 | 613 | heat shock protein 90; Provisional | 99.87 | |
| PRK14083 | 601 | HSP90 family protein; Provisional | 99.86 | |
| PTZ00272 | 701 | heat shock protein 83 kDa (Hsp83); Provisional | 99.86 | |
| KOG1845 | 775 | consensus MORC family ATPases [Cell cycle control, | 99.85 | |
| KOG0019 | 656 | consensus Molecular chaperone (HSP90 family) [Post | 99.75 | |
| KOG0020 | 785 | consensus Endoplasmic reticulum glucose-regulated | 99.72 | |
| PF13589 | 137 | HATPase_c_3: Histidine kinase-, DNA gyrase B-, and | 99.68 | |
| PF07496 | 50 | zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zi | 99.58 | |
| PRK00095 | 617 | mutL DNA mismatch repair protein; Reviewed | 99.4 | |
| TIGR00585 | 312 | mutl DNA mismatch repair protein MutL. All protein | 99.3 | |
| COG0323 | 638 | MutL DNA mismatch repair enzyme (predicted ATPase) | 99.25 | |
| COG1389 | 538 | DNA topoisomerase VI, subunit B [DNA replication, | 99.11 | |
| KOG1979 | 694 | consensus DNA mismatch repair protein - MLH1 famil | 98.91 | |
| KOG1978 | 672 | consensus DNA mismatch repair protein - MLH2/PMS1/ | 98.79 | |
| PRK14868 | 795 | DNA topoisomerase VI subunit B; Provisional | 98.78 | |
| PRK04184 | 535 | DNA topoisomerase VI subunit B; Validated | 98.74 | |
| TIGR01052 | 488 | top6b DNA topoisomerase VI, B subunit. This model | 98.59 | |
| PRK05559 | 631 | DNA topoisomerase IV subunit B; Reviewed | 98.44 | |
| TIGR01055 | 625 | parE_Gneg DNA topoisomerase IV, B subunit, proteob | 98.38 | |
| PF02518 | 111 | HATPase_c: Histidine kinase-, DNA gyrase B-, and H | 98.24 | |
| PRK05644 | 638 | gyrB DNA gyrase subunit B; Validated | 98.21 | |
| PRK14939 | 756 | gyrB DNA gyrase subunit B; Provisional | 98.2 | |
| TIGR01059 | 654 | gyrB DNA gyrase, B subunit. This model describes t | 98.18 | |
| PRK14867 | 659 | DNA topoisomerase VI subunit B; Provisional | 98.17 | |
| smart00433 | 594 | TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras | 98.17 | |
| KOG1977 | 1142 | consensus DNA mismatch repair protein - MLH3 famil | 97.97 | |
| TIGR01058 | 637 | parE_Gpos DNA topoisomerase IV, B subunit, Gram-po | 97.48 | |
| PLN03237 | 1465 | DNA topoisomerase 2; Provisional | 97.28 | |
| smart00387 | 111 | HATPase_c Histidine kinase-like ATPases. Histidine | 97.24 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulati | 97.21 | |
| COG0187 | 635 | GyrB Type IIA topoisomerase (DNA gyrase/topo II, t | 97.21 | |
| cd00075 | 103 | HATPase_c Histidine kinase-like ATPases; This fami | 97.19 | |
| PRK10604 | 433 | sensor protein RstB; Provisional | 97.12 | |
| PRK09470 | 461 | cpxA two-component sensor protein; Provisional | 97.09 | |
| PRK10364 | 457 | sensor protein ZraS; Provisional | 96.98 | |
| PRK09467 | 435 | envZ osmolarity sensor protein; Provisional | 96.95 | |
| PRK09303 | 380 | adaptive-response sensory kinase; Validated | 96.84 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 96.83 | |
| PHA02569 | 602 | 39 DNA topoisomerase II large subunit; Provisional | 96.82 | |
| TIGR01386 | 457 | cztS_silS_copS heavy metal sensor kinase. Members | 96.81 | |
| COG0642 | 336 | BaeS Signal transduction histidine kinase [Signal | 96.77 | |
| PRK10755 | 356 | sensor protein BasS/PmrB; Provisional | 96.76 | |
| PRK11086 | 542 | sensory histidine kinase DcuS; Provisional | 96.7 | |
| PRK11006 | 430 | phoR phosphate regulon sensor protein; Provisional | 96.68 | |
| PRK15053 | 545 | dpiB sensor histidine kinase DpiB; Provisional | 96.65 | |
| TIGR02966 | 333 | phoR_proteo phosphate regulon sensor kinase PhoR. | 96.61 | |
| PRK11100 | 475 | sensory histidine kinase CreC; Provisional | 96.53 | |
| PRK10549 | 466 | signal transduction histidine-protein kinase BaeS; | 96.52 | |
| TIGR02916 | 679 | PEP_his_kin putative PEP-CTERM system histidine ki | 96.37 | |
| PTZ00109 | 903 | DNA gyrase subunit b; Provisional | 96.36 | |
| PLN03128 | 1135 | DNA topoisomerase 2; Provisional | 96.21 | |
| PTZ00108 | 1388 | DNA topoisomerase 2-like protein; Provisional | 96.2 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 96.16 | |
| PRK10815 | 485 | sensor protein PhoQ; Provisional | 96.11 | |
| PRK15347 | 921 | two component system sensor kinase SsrA; Provision | 95.99 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 95.97 | |
| COG4191 | 603 | Signal transduction histidine kinase regulating C4 | 95.75 | |
| PRK10337 | 449 | sensor protein QseC; Provisional | 95.73 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 95.63 | |
| TIGR03785 | 703 | marine_sort_HK proteobacterial dedicated sortase s | 95.39 | |
| TIGR01925 | 137 | spIIAB anti-sigma F factor. This model describes t | 95.39 | |
| PRK11466 | 914 | hybrid sensory histidine kinase TorS; Provisional | 95.32 | |
| PRK09835 | 482 | sensor kinase CusS; Provisional | 95.3 | |
| TIGR02956 | 968 | TMAO_torS TMAO reductase sytem sensor TorS. This p | 95.25 | |
| PRK11073 | 348 | glnL nitrogen regulation protein NR(II); Provision | 94.98 | |
| PRK10490 | 895 | sensor protein KdpD; Provisional | 94.9 | |
| PRK10547 | 670 | chemotaxis protein CheA; Provisional | 94.85 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 94.8 | |
| PRK11107 | 919 | hybrid sensory histidine kinase BarA; Provisional | 94.64 | |
| PRK10618 | 894 | phosphotransfer intermediate protein in two-compon | 94.13 | |
| KOG0787 | 414 | consensus Dehydrogenase kinase [Signal transductio | 94.02 | |
| COG3850 | 574 | NarQ Signal transduction histidine kinase, nitrate | 93.81 | |
| PRK13557 | 540 | histidine kinase; Provisional | 93.68 | |
| PF13581 | 125 | HATPase_c_2: Histidine kinase-like ATPase domain | 93.54 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 93.49 | |
| PRK03660 | 146 | anti-sigma F factor; Provisional | 93.29 | |
| TIGR01924 | 159 | rsbW_low_gc serine-protein kinase RsbW. This model | 93.1 | |
| PRK04069 | 161 | serine-protein kinase RsbW; Provisional | 92.98 | |
| COG4585 | 365 | Signal transduction histidine kinase [Signal trans | 92.82 | |
| COG0643 | 716 | CheA Chemotaxis protein histidine kinase and relat | 92.3 | |
| PRK11644 | 495 | sensory histidine kinase UhpB; Provisional | 90.76 | |
| PRK10600 | 569 | nitrate/nitrite sensor protein NarX; Provisional | 90.29 | |
| COG2205 | 890 | KdpD Osmosensitive K+ channel histidine kinase [Si | 89.89 | |
| PF07744 | 119 | SPOC: SPOC domain; InterPro: IPR012921 Spen (split | 89.52 | |
| COG3920 | 221 | Signal transduction histidine kinase [Signal trans | 89.34 | |
| COG5002 | 459 | VicK Signal transduction histidine kinase [Signal | 88.55 | |
| COG2972 | 456 | Predicted signal transduction protein with a C-ter | 87.72 | |
| COG2172 | 146 | RsbW Anti-sigma regulatory factor (Ser/Thr protein | 87.68 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 87.48 | |
| COG5000 | 712 | NtrY Signal transduction histidine kinase involved | 85.82 | |
| COG4192 | 673 | Signal transduction histidine kinase regulating ph | 84.31 | |
| COG4251 | 750 | Bacteriophytochrome (light-regulated signal transd | 81.27 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 80.78 |
| >KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-28 Score=281.17 Aligned_cols=422 Identities=21% Similarity=0.230 Sum_probs=293.5
Q ss_pred CCceeeecCCCCceeeecCHHHHHHhhccccCCHHHHHHHHHhccccc---CCCccEEEEEecccccCCCCcCEEEEE--
Q 004432 222 EPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA---KATKLEISIESIYFKKAGKDIPMLSII-- 296 (754)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~p~fL~slst~hi~~pf~AIaELIDNA~DA---gAt~V~I~I~~~~~~~~~~~~~~L~I~-- 296 (754)
.+.-+...+.++-.+++++|+|||+++|+| .|.++|++||+|||+|. +|+.+.|. .+ ++.-+.....++|.
T Consensus 115 a~~~~~~~~~G~~~~iivhpkflhsnatsh-k~a~~a~aeLldnalDEi~~~~tf~~vd--~I-~p~~d~~i~a~~v~~~ 190 (775)
T KOG1845|consen 115 AELDVIIGKSGGTLHIIVHPKFLHSNATSH-KWAKGAIAELLDNALDEITNGATFVRVD--YI-NPVMDIFIRALVVQLK 190 (775)
T ss_pred ccccceeccCCceeEEEEehhhhcCCCccc-ccccChhhhhccccccccccccceEEee--ee-cccccccceeEEeecc
Confidence 344446666666799999999999999999 89999999999999998 46665443 21 11112224455555
Q ss_pred ---eCCCCCCHHhHHHhhhcccCCCCCCCCCcccccCceeeeecccccceEEEEEeeCC------CCceeEEEEEec--C
Q 004432 297 ---DDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTAD------SRSIAFLSQSLN--Q 365 (754)
Q Consensus 297 ---DNG~GMt~eeL~~~l~fG~S~k~~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g------~~sv~~ls~sf~--~ 365 (754)
|||+||.++-+..+|.+|++.+. +-...+||||+||+++.|++|.+++|++|..+ .+++|+++++|. +
T Consensus 191 ~~s~~gg~~~~~~i~~~m~l~~~~k~-e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t 269 (775)
T KOG1845|consen 191 RISDDGGGMKPEVIRKCMSLGYSSKK-EANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKT 269 (775)
T ss_pred ceeccccccCHHHHHHHHHhhhhhhh-hhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeeccc
Confidence 77999999999999999998875 33689999999999999999999999999432 568999999994 5
Q ss_pred CCeeEEEec----cccCCCCc-EEEEEeccccchhhhhhhhh-----hhhcCCCchh--hHHHh-h------hc----cc
Q 004432 366 GKDNLEIPI----VSYYRKGQ-FMELDTVVQSEATAKYNLKS-----IKEFSPFNKY--LIGEK-A------GL----FQ 422 (754)
Q Consensus 366 g~~~i~VPi----~~~~~~Gt-~I~l~l~~~~e~~~~~~L~~-----I~kySpF~s~--pI~e~-~------~~----~~ 422 (754)
+.++++||+ ..++.... +..+..+.. ..|..++.+ +++|+||.+. .+.+. . .. +.
T Consensus 270 ~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~--~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~~~~ 347 (775)
T KOG1845|consen 270 GKRDFIVPMRLIKMDYEKSDQLWQGILYKSG--VDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGHQFN 347 (775)
T ss_pred cCCceeEecchhhhhhhcccccccceeeccc--cccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcchhh
Confidence 788999999 44443211 111112211 224444444 9999999984 22220 0 01 22
Q ss_pred -cCCCCcEEEEEeccCCC---CceeeeccCCCCCCCCCCcCcceeecccccCCCCcccccCcchhhHHHHHhhhhcC--C
Q 004432 423 -DKCTGTQIYIWNLDQWG---SNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLV--P 496 (754)
Q Consensus 423 -~~~~GT~IiI~NLrr~~---~~~ELdF~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~p~~ySLRaYLSiLYL~--P 496 (754)
...+||.+|+|++++|. +-.++||+.+ +++|. ....++++.|.++||+. +
T Consensus 348 ~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~--------~~~i~----------------~~~~~~~~s~~sil~~~~~~ 403 (775)
T KOG1845|consen 348 IMNKPGTDVIIYNLRRWKGDEGILELDFDLD--------PHVIP----------------WTYCHSHLSEASILLLTRRL 403 (775)
T ss_pred hccCCCceeeeechhhhcccccceeeccccC--------ccccc----------------ccchhhhhhcccccchhccc
Confidence 25799999999997663 3478888765 24442 13456889999999974 8
Q ss_pred CeEEEEcCeeecccccccccCceeee--cccccc-------eEEEEEEccccccc-ccccceEEEEEeCeeee----eee
Q 004432 497 RMKIYVQGSLVRSRPLAKSLNKTCVE--TGIIMG-------KSAHLTLGRCQLEW-EQMNCGIFLYWHGRLIE----AYK 562 (754)
Q Consensus 497 rm~I~LnG~kV~~~~i~~~L~~~~v~--~~~~~~-------k~V~It~Gf~k~e~-~~~~~Gi~VY~nnRLIk----~~~ 562 (754)
+|.+.+.|+.+.++.+.....++... .+.... .......||.+... ....+|+.|||.+|||. ++|
T Consensus 404 ~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~~~~ 483 (775)
T KOG1845|consen 404 RFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCRPFV 483 (775)
T ss_pred cchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcchhhccccee
Confidence 99999999999999888766554321 111100 11122445555432 23456999999999999 999
Q ss_pred eccccccCCCCCceEEEEEecCcccccCCCceecccCccCccCchHHHHHHHHHHHHHHHHHhhcccccccccc---cCC
Q 004432 563 RVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKD---GAL 639 (754)
Q Consensus 563 kVg~q~~~~~~grGVIGVve~~~l~~p~~~~~~pthnKQdFe~t~~y~~L~~~L~e~l~eYW~~~~~~~~~~~~---~~~ 639 (754)
|.++. .+..++++++++..++ . +++|++|+|+++-.-..++.+..++++.||...++.+.+... ..+
T Consensus 484 k~~n~--~~s~~~~~~~il~~n~-~-------~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q~~~~~ 553 (775)
T KOG1845|consen 484 KIDNA--TGSLGQAVIPILVGNF-V-------ETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQLQKER 553 (775)
T ss_pred eecCC--Cccccccccceecccc-c-------ccCCCccccccccccccchhhhhhcccccccccccccCccchhhhhhh
Confidence 99985 5579999999999984 3 469999999999999999999999999999999998876521 111
Q ss_pred CC-----CCCceeeCccchhhccCCCCCCCCCCCCCceecCCC---CCCCCCCCcccccCC
Q 004432 640 YK-----PDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP---FEGLCDLPEQKVDAG 692 (754)
Q Consensus 640 ~~-----~~~~WVQCd~C~KWR~Lp~~~~~~~lp~~W~C~mn~---~~~sC~~pEe~~~~~ 692 (754)
+. ....=-||- += ++. ...--..|+|..++ .++.|+-+-...+.+
T Consensus 554 ~~~~~~~Ke~~~~~~~---~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (775)
T KOG1845|consen 554 ESTTTVVKEEKPENNH---LS--SSK---RTQRRKSTGRAISVAVEKFNLRSGPNGRGQID 606 (775)
T ss_pred cccceeecccccccch---hc--chh---ccccccccccccccchhhhccccccCCcCCcc
Confidence 11 011112221 11 111 12334689999998 357776665555444
|
|
| >COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PTZ00130 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PRK05218 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PRK14083 HSP90 family protein; Provisional | Back alignment and domain information |
|---|
| >PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional | Back alignment and domain information |
|---|
| >KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B | Back alignment and domain information |
|---|
| >PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PRK00095 mutL DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR00585 mutl DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
| >COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK14868 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >PRK04184 DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
| >TIGR01052 top6b DNA topoisomerase VI, B subunit | Back alignment and domain information |
|---|
| >PRK05559 DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
| >PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >PRK05644 gyrB DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
| >PRK14939 gyrB DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >TIGR01059 gyrB DNA gyrase, B subunit | Back alignment and domain information |
|---|
| >PRK14867 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >smart00433 TOP2c TopoisomeraseII | Back alignment and domain information |
|---|
| >KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive | Back alignment and domain information |
|---|
| >PLN03237 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >smart00387 HATPase_c Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >PRK10604 sensor protein RstB; Provisional | Back alignment and domain information |
|---|
| >PRK09470 cpxA two-component sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK10364 sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
| >PRK09467 envZ osmolarity sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK09303 adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
| >PHA02569 39 DNA topoisomerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR01386 cztS_silS_copS heavy metal sensor kinase | Back alignment and domain information |
|---|
| >COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10755 sensor protein BasS/PmrB; Provisional | Back alignment and domain information |
|---|
| >PRK11086 sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
| >PRK11006 phoR phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK15053 dpiB sensor histidine kinase DpiB; Provisional | Back alignment and domain information |
|---|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
| >PRK11100 sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
| >PRK10549 signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
| >TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase | Back alignment and domain information |
|---|
| >PTZ00109 DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >PLN03128 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >PTZ00108 DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
| >PRK10815 sensor protein PhoQ; Provisional | Back alignment and domain information |
|---|
| >PRK15347 two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
| >COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10337 sensor protein QseC; Provisional | Back alignment and domain information |
|---|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
| >TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase | Back alignment and domain information |
|---|
| >TIGR01925 spIIAB anti-sigma F factor | Back alignment and domain information |
|---|
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
| >PRK09835 sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
| >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
| >PRK11073 glnL nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
| >PRK10490 sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
| >PRK10547 chemotaxis protein CheA; Provisional | Back alignment and domain information |
|---|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
| >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
| >KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
| >PF13581 HATPase_c_2: Histidine kinase-like ATPase domain | Back alignment and domain information |
|---|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >PRK03660 anti-sigma F factor; Provisional | Back alignment and domain information |
|---|
| >TIGR01924 rsbW_low_gc serine-protein kinase RsbW | Back alignment and domain information |
|---|
| >PRK04069 serine-protein kinase RsbW; Provisional | Back alignment and domain information |
|---|
| >COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11644 sensory histidine kinase UhpB; Provisional | Back alignment and domain information |
|---|
| >PRK10600 nitrate/nitrite sensor protein NarX; Provisional | Back alignment and domain information |
|---|
| >COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways | Back alignment and domain information |
|---|
| >COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Length = 69 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 5e-12
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 645 EWVQC--NKCRKWRMLDPGFDTKSLPVEWFCYMK--PFEGLCDLPEQK 688
WVQC C KWR L D LP W C CD+PE+
Sbjct: 17 VWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEET 64
|
| >2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Length = 100 | Back alignment and structure |
|---|
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Length = 333 | Back alignment and structure |
|---|
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Length = 365 | Back alignment and structure |
|---|
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Length = 367 | Back alignment and structure |
|---|
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Length = 348 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Length = 272 | Back alignment and structure |
|---|
| >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Length = 236 | Back alignment and structure |
|---|
| >3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Length = 228 | Back alignment and structure |
|---|
| >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Length = 264 | Back alignment and structure |
|---|
| >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Length = 269 | Back alignment and structure |
|---|
| >3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Length = 256 | Back alignment and structure |
|---|
| >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Length = 220 | Back alignment and structure |
|---|
| >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Length = 666 | Back alignment and structure |
|---|
| >3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
| >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Length = 677 | Back alignment and structure |
|---|
| >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Length = 235 | Back alignment and structure |
|---|
| >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Length = 281 | Back alignment and structure |
|---|
| >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Length = 624 | Back alignment and structure |
|---|
| >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Length = 559 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 754 | |||
| 3peh_A | 281 | Endoplasmin homolog; structural genomics, structur | 99.88 | |
| 3nmq_A | 239 | Heat shock protein HSP 90-beta; ATPase, chaperone- | 99.88 | |
| 3ied_A | 272 | Heat shock protein; HSP90, chaperone, structural g | 99.87 | |
| 1y4s_A | 559 | Chaperone protein HTPG; HSP90, molecular chaperone | 99.87 | |
| 1qy5_A | 269 | Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N | 99.85 | |
| 3t0h_A | 228 | Heat shock protein HSP 90-alpha; chaperone, ATPase | 99.85 | |
| 2gqp_A | 236 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 99.84 | |
| 3o0i_A | 256 | HSP90AA1 protein; HSP90 heat-shock proteins, chape | 99.84 | |
| 1yc1_A | 264 | HSP 86, heat shock protein HSP 90-alpha; cell-cycl | 99.83 | |
| 2wer_A | 220 | ATP-dependent molecular chaperone HSP82; ATPase, A | 99.83 | |
| 2cg9_A | 677 | ATP-dependent molecular chaperone HSP82; chaperone | 99.82 | |
| 2ior_A | 235 | Chaperone protein HTPG; heat shock protein, HSP90; | 99.8 | |
| 2ioq_A | 624 | Chaperone protein HTPG; heat shock protein, HSP90; | 99.79 | |
| 2o1u_A | 666 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 99.79 | |
| 2e61_A | 69 | Zinc finger CW-type PWWP domain protein 1; ZF-CW d | 99.66 | |
| 1b63_A | 333 | MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A | 99.62 | |
| 2l7p_A | 100 | Histone-lysine N-methyltransferase ASHH2; CW-domai | 99.58 | |
| 3h4l_A | 367 | DNA mismatch repair protein PMS1; ATP binding, DNA | 99.34 | |
| 1h7s_A | 365 | PMS1 protein homolog 2; DNA repair, GHL ATPase, mi | 99.29 | |
| 3na3_A | 348 | DNA mismatch repair protein MLH1; MUTL protein hom | 99.25 | |
| 1ei1_A | 391 | DNA gyrase B, GYRB; ATPase domain, dimer, isomeras | 99.0 | |
| 3cwv_A | 369 | DNA gyrase, B subunit, truncated; structural genom | 98.91 | |
| 1kij_A | 390 | DNA gyrase subunit B; topoisomerase, gyrase B-coum | 98.87 | |
| 3fv5_A | 201 | DNA topoisomerase 4 subunit B; topoisomerase IV B | 98.82 | |
| 1s16_A | 390 | Topoisomerase IV subunit B; two-domain protein com | 98.79 | |
| 1zxm_A | 400 | TOPO IIA ATPase, DNA topoisomerase II, alpha isozy | 98.54 | |
| 4duh_A | 220 | DNA gyrase subunit B; structure-based drug design, | 98.49 | |
| 4emv_A | 226 | DNA topoisomerase IV, B subunit; protein-inhibitor | 98.42 | |
| 1mu5_A | 471 | Type II DNA topoisomerase VI subunit B; GHKL ATPas | 98.36 | |
| 2zbk_B | 530 | Type 2 DNA topoisomerase 6 subunit B; DNA binding | 98.32 | |
| 3lnu_A | 408 | Topoisomerase IV subunit B; PARE, ATP-binding, nuc | 98.14 | |
| 2q2e_B | 621 | Type 2 DNA topoisomerase 6 subunit B; DNA-binding, | 98.07 | |
| 3ttz_A | 198 | DNA gyrase subunit B; protein-inhibitor complex, A | 97.84 | |
| 1pvg_A | 418 | DNA topoisomerase II; GHKL ATPase domain; HET: DNA | 97.76 | |
| 1id0_A | 152 | PHOQ histidine kinase; PHOQ/PHOP, signal transduct | 97.72 | |
| 1bxd_A | 161 | ENVZ(290-450), protein (osmolarity sensor protein | 97.62 | |
| 2c2a_A | 258 | Sensor histidine kinase; phosphotransfer, PHOQ, se | 97.45 | |
| 1ysr_A | 150 | Sensor-type histidine kinase PRRB; ATP-binding dom | 97.43 | |
| 1i58_A | 189 | Chemotaxis protein CHEA; beta-alpha sandwich, sign | 97.33 | |
| 4ew8_A | 268 | Sensor protein DIVL; signal transduction, two-comp | 97.33 | |
| 2q8g_A | 407 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 97.32 | |
| 2e0a_A | 394 | Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP | 97.29 | |
| 1th8_A | 145 | Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s | 97.26 | |
| 3d36_A | 244 | Sporulation kinase B; GHKL ATPase, four helix bund | 97.26 | |
| 1y8o_A | 419 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 97.24 | |
| 3a0y_A | 152 | Sensor protein; ATP-LID, kinase, phosphoprotein, t | 97.22 | |
| 1gkz_A | 388 | [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] | 97.21 | |
| 2btz_A | 394 | Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo | 97.19 | |
| 3jz3_A | 222 | Sensor protein QSEC; helix-turn-helix, kinase doma | 97.19 | |
| 3sl2_A | 177 | Sensor histidine kinase YYCG; ATP binding, intact | 97.13 | |
| 3zxo_A | 129 | Redox sensor histidine kinase response regulator; | 97.06 | |
| 1r62_A | 160 | Nitrogen regulation protein NR(II); PII, histidine | 96.98 | |
| 3ehg_A | 128 | Sensor kinase (YOCF protein); GHL ATPase domain, t | 96.97 | |
| 1b3q_A | 379 | Protein (chemotaxis protein CHEA); histine kinase, | 96.95 | |
| 3ehh_A | 218 | Sensor kinase (YOCF protein); four-helix bundle, G | 96.81 | |
| 3a0r_A | 349 | Sensor protein; four helix bundle, PAS fold, kinas | 96.59 | |
| 3zxq_A | 124 | Hypoxia sensor histidine kinase response regulato; | 95.87 | |
| 4gfh_A | 1177 | DNA topoisomerase 2; topoisomerase, protein-DNA co | 95.74 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 93.2 | |
| 4fpp_A | 247 | Phosphotransferase; four helix bundle, bergerat fo | 92.86 | |
| 3o70_A | 68 | PHD finger protein 13; PHF13, structural genomics | 92.47 | |
| 3o7a_A | 52 | PHD finger protein 13 variant; PHF13, zinc finger, | 91.65 | |
| 1we9_A | 64 | PHD finger family protein; structural genomics, PH | 90.86 | |
| 1wee_A | 72 | PHD finger family protein; structural genomics, PH | 89.99 | |
| 2lv9_A | 98 | Histone-lysine N-methyltransferase MLL5; zinc fing | 89.8 | |
| 3ke6_A | 399 | Protein RV1364C/MT1410; anti-sigma factor, anti-si | 88.18 | |
| 2kgg_A | 52 | Histone demethylase jarid1A; PHD finger, histone m | 83.91 | |
| 3kqi_A | 75 | GRC5, PHD finger protein 2; metal-binding, zinc-fi | 81.37 | |
| 1wep_A | 79 | PHF8; structural genomics, PHD domain, riken struc | 80.52 |
| >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-23 Score=219.60 Aligned_cols=170 Identities=24% Similarity=0.326 Sum_probs=130.8
Q ss_pred eeecCH-HHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCcCEEEEEeC
Q 004432 236 FVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDD 298 (754)
Q Consensus 236 ~~~v~p-~fL~slst~hi~~pf~AIaELIDNA~DAgA----------------t~V~I~I~~~~~~~~~~~~~~L~I~DN 298 (754)
.|+++- +.|..++.+.|++...||+|||+||+||.+ ..+.|.|.. +.+...|+|.||
T Consensus 27 ~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~------d~~~~tLtI~DN 100 (281)
T 3peh_A 27 QYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISA------NKEKNILSITDT 100 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE------ETTTTEEEEEEC
T ss_pred eehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEE------cCCCcEEEEEeC
Confidence 366663 466666888889999999999999999964 345666653 234689999999
Q ss_pred CCCCCHHhHHHhhh-cccCCCC---------CCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCe
Q 004432 299 GHGMTHQDVVRMTY-FGHKQPD---------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD 368 (754)
Q Consensus 299 G~GMt~eeL~~~l~-fG~S~k~---------~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~ 368 (754)
|+||++++|.++|+ ++.|.+. ..+...||+||+||+|++| +|++|+|+||+.+. .++.|.+-. ..
T Consensus 101 GiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~-vadkV~V~Sk~~~~--~~~~Wes~g--~g 175 (281)
T 3peh_A 101 GIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNDD--EQYIWESTA--DA 175 (281)
T ss_dssp SCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEEET--TS
T ss_pred CCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc-ccCEEEEEEecCCC--CEEEEEECC--Cc
Confidence 99999999988763 5555321 2357899999999999876 99999999999874 477887743 34
Q ss_pred eEEEecc---ccCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHHH
Q 004432 369 NLEIPIV---SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (754)
Q Consensus 369 ~i~VPi~---~~~~~Gt~I~l~l~~~~-e~~~~~~L~~-I~kySpF~s~pI~e 416 (754)
.+.|... .-..+||.|+|+++++. +++.++.++. |.+||.|+.+||..
T Consensus 176 ~fti~~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l 228 (281)
T 3peh_A 176 KFTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYL 228 (281)
T ss_dssp CEEEEECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEE
T ss_pred cEEEEEcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEE
Confidence 5555332 23468999999999865 7888888865 99999999999974
|
| >3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 | Back alignment and structure |
|---|
| >3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A | Back alignment and structure |
|---|
| >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* | Back alignment and structure |
|---|
| >3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... | Back alignment and structure |
|---|
| >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* | Back alignment and structure |
|---|
| >3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* | Back alignment and structure |
|---|
| >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* | Back alignment and structure |
|---|
| >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A | Back alignment and structure |
|---|
| >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} | Back alignment and structure |
|---|
| >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A | Back alignment and structure |
|---|
| >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A | Back alignment and structure |
|---|
| >2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* | Back alignment and structure |
|---|
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* | Back alignment and structure |
|---|
| >2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* | Back alignment and structure |
|---|
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} | Back alignment and structure |
|---|
| >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* | Back alignment and structure |
|---|
| >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* | Back alignment and structure |
|---|
| >4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* | Back alignment and structure |
|---|
| >4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* | Back alignment and structure |
|---|
| >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* | Back alignment and structure |
|---|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} | Back alignment and structure |
|---|
| >3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* | Back alignment and structure |
|---|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* | Back alignment and structure |
|---|
| >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* | Back alignment and structure |
|---|
| >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A | Back alignment and structure |
|---|
| >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* | Back alignment and structure |
|---|
| >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A | Back alignment and structure |
|---|
| >1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* | Back alignment and structure |
|---|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} | Back alignment and structure |
|---|
| >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A | Back alignment and structure |
|---|
| >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* | Back alignment and structure |
|---|
| >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* | Back alignment and structure |
|---|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
| >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* | Back alignment and structure |
|---|
| >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A | Back alignment and structure |
|---|
| >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* | Back alignment and structure |
|---|
| >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* | Back alignment and structure |
|---|
| >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A | Back alignment and structure |
|---|
| >3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
| >4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 754 | ||||
| d1h7sa2 | 203 | d.122.1.2 (A:29-231) DNA mismatch repair protein P | 7e-07 | |
| d1b63a2 | 218 | d.122.1.2 (A:-2-216) DNA mismatch repair protein M | 8e-05 |
| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: DNA gyrase/MutL, N-terminal domain domain: DNA mismatch repair protein PMS2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (114), Expect = 7e-07
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 258 AIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQ 317
A+ ELV+NS DA AT +++ ++ G D ++ + D+G G+ ++ +T H
Sbjct: 10 AVKELVENSLDAGATNIDLKLK-----DYGVD--LIEVSDNGCGVEEENFEGLTLKHHTS 62
Query: 318 PDADDPNRIGRFGVGFKTGAM 338
+ + GF+ A+
Sbjct: 63 KIQEFADLTQVETFGFRGEAL 83
|
| >d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 754 | |||
| d1uyla_ | 208 | HSP90 {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d2iwxa1 | 213 | HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.9 | |
| d2gqpa1 | 227 | HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | 99.89 | |
| d1b63a2 | 218 | DNA mismatch repair protein MutL {Escherichia coli | 99.44 | |
| d1h7sa2 | 203 | DNA mismatch repair protein PMS2 {Human (Homo sapi | 99.42 | |
| d2hkja3 | 219 | Topoisomerase VI-B subunit {Archaeon Sulfolobus sh | 99.06 | |
| d1bxda_ | 161 | Histidine kinase domain of the osmosensor EnvZ {Es | 97.97 | |
| d1pvga2 | 239 | DNA topoisomerase II {Baker's yeast (Saccharomyces | 97.89 | |
| d1kija2 | 212 | DNA gyrase B {Thermus thermophilus [TaxId: 274]} | 97.7 | |
| d1ysra1 | 148 | Sensor-type histidine kinase PrrB {Mycobacterium t | 97.69 | |
| d1id0a_ | 146 | Histidine kinase PhoQ domain {Escherichia coli [Ta | 97.67 | |
| d1jm6a2 | 190 | Pyruvate dehydrogenase kinase {Rat (Rattus norvegi | 97.62 | |
| d2c2aa2 | 161 | Sensor histidine kinase TM0853 {Thermotoga maritim | 97.6 | |
| d1gkza2 | 193 | Branched-chain alpha-ketoacid dehydrogenase kinase | 97.59 | |
| d1ei1a2 | 219 | DNA gyrase B {Escherichia coli [TaxId: 562]} | 97.56 | |
| d1y8oa2 | 125 | Pyruvate dehydrogenase kinase {Human (Homo sapiens | 97.33 | |
| d1s14a_ | 168 | Topoisomerase IV subunit B {Escherichia coli [TaxI | 97.19 | |
| d1th8a_ | 139 | Anti-sigma factor spoIIab {Bacillus stearothermoph | 96.65 | |
| d1ixma_ | 179 | Sporulation response regulatory protein Spo0B {Bac | 96.47 | |
| d1r62a_ | 156 | Nitrogen regulation protein NtrB, C-terminal domai | 96.43 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 87.92 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 85.48 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 84.31 |
| >d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Heat shock protein 90, HSP90, N-terminal domain domain: HSP90 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1e-24 Score=218.45 Aligned_cols=165 Identities=24% Similarity=0.310 Sum_probs=128.4
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCcCEEEEEeCCCCCCHH
Q 004432 242 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (754)
Q Consensus 242 ~fL~slst~hi~~pf~AIaELIDNA~DAgA----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (754)
+.|+.+..+.|+++..+|||||+||.||.. ....|.|.. +.+..+|+|.|||+||+.+
T Consensus 12 ~ll~ll~~slYs~~~iflRELIqNa~DA~~k~~~~~~~~~~~~~~~~~~~i~i~~------d~~~~~l~I~DnGiGMt~~ 85 (208)
T d1uyla_ 12 QLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLTIVDTGIGMTKA 85 (208)
T ss_dssp HHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEEECSCCCCHH
T ss_pred HHHHHHHHhhcCCchHhHHHHHhhHHHHHHHHHHHhcCCchhccCCcccceEEee------cCCccEEEEEcCCccccHH
Confidence 466777888899999999999999999931 334455543 3457899999999999999
Q ss_pred hHHHhhh-cccCCC--------CCCCCCcccccCceeeeecccccceEEEEEeeCCCCceeEEEEEecCCCeeEEEeccc
Q 004432 306 DVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS 376 (754)
Q Consensus 306 eL~~~l~-fG~S~k--------~~~~~~~IGqfGvGfKsAsmrLg~~v~V~SK~~g~~sv~~ls~sf~~g~~~i~VPi~~ 376 (754)
++.+.|+ +|.|.+ ...+...||||||||+|++| ++++|.|.||+.+.....++|.. .+...+......
T Consensus 86 el~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGVGFyS~Fm-Vad~v~V~sk~~~~~~~~~~~~~--~~~~~~~~~~~~ 162 (208)
T d1uyla_ 86 DLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDDEQYAWESSA--GGSFTVRTDTGE 162 (208)
T ss_dssp HHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTSCCEEEEECS--TTEEEEEECCSS
T ss_pred HHHhhcccccccchHHHHHhhhhccchhhhhhcccceEEeee-ccCceEEEEecCCcchheeeecc--CCCceEEecccc
Confidence 9998774 555532 12356899999999999999 99999999998887655555543 344455555445
Q ss_pred cCCCCcEEEEEecccc-chhhhhhhhh-hhhcCCCchhhHH
Q 004432 377 YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (754)
Q Consensus 377 ~~~~Gt~I~l~l~~~~-e~~~~~~L~~-I~kySpF~s~pI~ 415 (754)
...+||.|+|+++++. ++..++.++. |.+||.|..+||.
T Consensus 163 ~~~~GT~I~L~lk~d~~efl~~~~i~~likkys~fi~~PI~ 203 (208)
T d1uyla_ 163 PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 203 (208)
T ss_dssp CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEE
T ss_pred cCCCCcEEEEEeCCChHHHcCHHHHHHHHHHHhcccCcCeE
Confidence 5578999999999875 6777888865 9999999999886
|
| >d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} | Back information, alignment and structure |
|---|
| >d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|