Your job contains 1 sequence.
>004436
MVGLIDLNTTEDDENPSSGSLSPSSSSASALSASGFALAPAPASASASASGVSLELWHAC
AGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDLPPHPFCRVADVKLHAEAASDEV
YAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDTSTHGGFSVPR
RAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLV
SGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFSIS
YNPSPLCRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVD
PVRWPGSKWRCLLVRWDDVESNRHTRVSPWEIEPSGSVCGSNNLITSGLKRTRIGLPSGK
PEFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQNLHPSEVRRGILGSNGSG
IAAIGDGSRNLQVKSDISYKGIGIGFGESFRFHKVLQGQEIFPKSPYGRAPTNNEARGIG
SLGISDGVLVSGSRNRWSAVVPGYNTHTSPSAPPVQVSSPSSVLMFQLASNPISNYNPPY
SLNDQEKEQRVNCQSFFHNSEIYGGKHASSSFLDHSFRGGDQEVMDSIGQSNEHISPPLV
GQPTVRGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVASPLNPRSSFLSHVGQQF
HPKPPVMSKATGSNCTNVSNHCAVRDMLFDIAL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004436
(753 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2057609 - symbol:ETT "ETTIN" species:3702 "Ara... 1501 5.9e-164 3
TAIR|locus:2175098 - symbol:ARF4 "auxin response factor 4... 1096 1.4e-114 2
TAIR|locus:2174013 - symbol:ARF2 "auxin response factor 2... 906 3.0e-95 2
TAIR|locus:2025991 - symbol:ARF1 "auxin response factor 1... 855 3.0e-89 2
TAIR|locus:2204237 - symbol:ARF6 "auxin response factor 6... 846 2.1e-88 2
TAIR|locus:2152642 - symbol:ARF8 "auxin response factor 8... 854 1.5e-87 2
TAIR|locus:2202205 - symbol:ARF19 "auxin response factor ... 837 5.7e-86 2
TAIR|locus:2035454 - symbol:MP "MONOPTEROS" species:3702 ... 846 1.7e-84 1
TAIR|locus:2039124 - symbol:ARF11 "auxin response factor ... 800 4.0e-83 2
TAIR|locus:2076765 - symbol:ARF18 "auxin response factor ... 800 9.4e-82 2
TAIR|locus:2138096 - symbol:ARF9 "auxin response factor 9... 809 1.4e-80 1
TAIR|locus:2014731 - symbol:ARF14 "auxin response factor ... 710 9.7e-74 2
TAIR|locus:2036288 - symbol:ARF22 "auxin response factor ... 709 6.7e-73 2
TAIR|locus:2126460 - symbol:ARF16 "auxin response factor ... 537 7.7e-73 3
TAIR|locus:2009298 - symbol:ARF21 "auxin response factor ... 707 1.8e-72 2
TAIR|locus:2026145 - symbol:ARF12 "auxin response factor ... 693 4.2e-71 2
TAIR|locus:2206717 - symbol:ARF20 "auxin response factor ... 697 1.0e-68 1
TAIR|locus:2057517 - symbol:ARF10 "auxin response factor ... 514 2.9e-68 2
TAIR|locus:2008991 - symbol:ARF13 "AUXIN RESPONSE FACTOR ... 486 6.0e-65 3
TAIR|locus:2029436 - symbol:ARF17 "auxin response factor ... 425 1.6e-50 3
TAIR|locus:2037169 - symbol:ARF23 "auxin response factor ... 441 4.0e-41 1
TAIR|locus:2041404 - symbol:NGA1 "NGATHA1" species:3702 "... 199 2.7e-13 2
TAIR|locus:2079537 - symbol:NGA2 "NGATHA2" species:3702 "... 178 7.9e-11 1
TAIR|locus:2117007 - symbol:NGA4 "NGATHA4" species:3702 "... 174 3.6e-10 1
TAIR|locus:2200950 - symbol:NGA3 "NGATHA3" species:3702 "... 172 7.5e-10 1
TAIR|locus:2205319 - symbol:RAV1 "related to ABI3/VP1 1" ... 162 8.9e-09 1
TAIR|locus:2085969 - symbol:EDF3 "ethylene response DNA b... 157 3.0e-08 1
TAIR|locus:2039165 - symbol:ABS2 "ABNORMAL SHOOT 2" speci... 146 1.7e-07 1
TAIR|locus:2031185 - symbol:TEM1 "TEMPRANILLO 1" species:... 144 1.0e-06 1
TAIR|locus:2164215 - symbol:DPA4 "DEVELOPMENT-RELATED PcG... 141 1.1e-06 1
TAIR|locus:2012438 - symbol:RAV2 "related to ABI3/VP1 2" ... 142 1.6e-06 1
TAIR|locus:2080782 - symbol:AT3G11580 species:3702 "Arabi... 129 2.3e-05 1
TAIR|locus:2064417 - symbol:HSI2 "high-level expression o... 135 3.4e-05 1
TAIR|locus:2116592 - symbol:HSL1 "HSI2-like 1" species:37... 130 0.00012 1
>TAIR|locus:2057609 [details] [associations]
symbol:ETT "ETTIN" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0009850 "auxin
metabolic process" evidence=TAS] [GO:0010158 "abaxial cell fate
specification" evidence=IGI] [GO:0010050 "vegetative phase change"
evidence=IGI;RCA;IMP] [GO:0007389 "pattern specification process"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048438 "floral whorl development" evidence=RCA] [GO:0048439
"flower morphogenesis" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=ISS] InterPro:IPR003340
InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0009733 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009850 GO:GO:0010050 HOGENOM:HOG000241141
KO:K14486 EMBL:U89296 EMBL:AF007788 EMBL:U78721 EMBL:AF336917
EMBL:AF360313 EMBL:AY056365 EMBL:AB199791 IPI:IPI00527337
PIR:E84750 PIR:T03278 RefSeq:NP_180942.1 UniGene:At.10360
ProteinModelPortal:O23661 SMR:O23661 IntAct:O23661 STRING:O23661
EnsemblPlants:AT2G33860.1 GeneID:817956 KEGG:ath:AT2G33860
GeneFarm:3366 TAIR:At2g33860 eggNOG:NOG315820 InParanoid:O23661
OMA:HESNNES PhylomeDB:O23661 ProtClustDB:CLSN2913114
Genevestigator:O23661 GermOnline:AT2G33860 GO:GO:0010158
Uniprot:O23661
Length = 608
Score = 1501 (533.4 bits), Expect = 5.9e-164, Sum P(3) = 5.9e-164
Identities = 294/464 (63%), Positives = 342/464 (73%)
Query: 1 MVGLIDLNTTEDDENPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSLELWHAC 60
M GLIDLN E +E+ V LELWHAC
Sbjct: 1 MGGLIDLNVMETEEDETQTQTPSSASGSVSPTSSSSASVSVVSSNSAGGG-VCLELWHAC 59
Query: 61 AGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXXYDLPPHPFCRVADVKLHAEAASDEV 120
AGPLISLPKRGS+V+YFPQGHLE DF Y LPPH FCR+ DVKLHAE +DEV
Sbjct: 60 AGPLISLPKRGSLVLYFPQGHLEQAPDFSAAI---YGLPPHVFCRILDVKLHAETTTDEV 116
Query: 121 YAQVSLVPD-ELIEQKVREGKIE-DGDEDSVEVVAKSSTPHMFCKTLTASDTSTHGGFSV 178
YAQVSL+P+ E IE+KVREG I+ DG E+ EV+ +S+TPHMFCKTLTASDTSTHGGFSV
Sbjct: 117 YAQVSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKTLTASDTSTHGGFSV 176
Query: 179 PRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKK 238
PRRAAEDCFPPLDYSQ RPSQEL+A+DLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKK
Sbjct: 177 PRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKK 236
Query: 239 LVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFS 298
LVSGDAVLFLRG+DG+LRLG+RRA ++ A + +Q + N+ +EV AI+ FS
Sbjct: 237 LVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFS 296
Query: 299 ISYNPSPLCRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGD 358
ISYNP +AS S FIIP KFLK +D+ F +GMRFK R E++DA+ERR G+I G+ D
Sbjct: 297 ISYNP----KASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASERRSPGIISGISD 352
Query: 359 VDPVRWPGSKWRCLLVRWDDVESNRHT-RVSPWEIEPSGSVCGSNNLITSGLKRTRIGLP 417
+DP+RWPGSKWRCLLVRWDD+ +N H RVSPWEIEPSGS+ S + +T+G KR+RIG
Sbjct: 353 LDPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWEIEPSGSISNSGSFVTTGPKRSRIGFS 412
Query: 418 SGKPEFPVPDGIGVTDFGESLRFQKVLQGQEIL-GF-NTLYDGG 459
SGKP+ PV +GI TDF ESLRFQ+VLQGQEI GF NT DGG
Sbjct: 413 SGKPDIPVSEGIRATDFEESLRFQRVLQGQEIFPGFINTCSDGG 456
Score = 75 (31.5 bits), Expect = 5.9e-164, Sum P(3) = 5.9e-164
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 503 GIGFGESFRFHKVLQGQEIFP 523
G FG+S+ FHKVLQGQE P
Sbjct: 466 GTEFGDSYGFHKVLQGQETVP 486
Score = 63 (27.2 bits), Expect = 1.1e-162, Sum P(3) = 1.1e-162
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 432 TDFGESLRFQKVLQGQEILGFNTLYD 457
T+FG+S F KVLQGQE + ++ D
Sbjct: 467 TEFGDSYGFHKVLQGQETVPAYSITD 492
Score = 57 (25.1 bits), Expect = 5.9e-164, Sum P(3) = 5.9e-164
Identities = 26/77 (33%), Positives = 30/77 (38%)
Query: 677 GSCRLFGFSLTEERHVANIEDNAAPVASPLNPRSSFLSHVGQQFHPKPPVMSKATGSNCT 736
G CRLFGF LT+E A A P G V S S
Sbjct: 548 GRCRLFGFPLTDET-TAVASATAVPCVE------------GNSMKGASAVQSNHHHSQGR 594
Query: 737 NVSNHCAVRDMLFDIAL 753
++ A+RDML DIAL
Sbjct: 595 DIY---AMRDMLLDIAL 608
>TAIR|locus:2175098 [details] [associations]
symbol:ARF4 "auxin response factor 4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0010158 "abaxial
cell fate specification" evidence=IGI] [GO:0010050 "vegetative
phase change" evidence=IGI] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AB011483 GO:GO:0010050
HOGENOM:HOG000241141 GO:GO:0010158 EMBL:AF013466 EMBL:AF344313
EMBL:AY080832 EMBL:AY113977 IPI:IPI00525857 RefSeq:NP_200853.1
UniGene:At.6797 ProteinModelPortal:Q9ZTX9 SMR:Q9ZTX9 IntAct:Q9ZTX9
STRING:Q9ZTX9 PaxDb:Q9ZTX9 PRIDE:Q9ZTX9 EnsemblPlants:AT5G60450.1
GeneID:836166 KEGG:ath:AT5G60450 GeneFarm:3367 TAIR:At5g60450
eggNOG:NOG277773 InParanoid:Q9ZTX9 OMA:RILYTDS PhylomeDB:Q9ZTX9
ProtClustDB:CLSN2686689 Genevestigator:Q9ZTX9 GermOnline:AT5G60450
Uniprot:Q9ZTX9
Length = 788
Score = 1096 (390.9 bits), Expect = 1.4e-114, Sum P(2) = 1.4e-114
Identities = 241/478 (50%), Positives = 306/478 (64%)
Query: 55 ELWHACAGPLISLPKRGSVVVYFPQGHLEH---VSDFXXXXXXXYDLPPHPFCRVADVKL 111
ELWHACAGPL LPK+G+VVVYFPQGHLE VS +DL P CRV +V+L
Sbjct: 65 ELWHACAGPLTCLPKKGNVVVYFPQGHLEQDAMVSYSSPLEIPKFDLNPQIVCRVVNVQL 124
Query: 112 HAEAASDEVYAQVSLVPDELIEQKVREGK-IED--GDEDSVEVVAKSSTPHMFCKTLTAS 168
A +DEVY QV+L+P + EGK +++ G+E+ + TPHMFCKTLTAS
Sbjct: 125 LANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNGSSSVKRTPHMFCKTLTAS 184
Query: 169 DTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTT 228
DTSTHGGFSVPRRAAEDCF PLDY QQRPSQEL+AKDLHG+EW+FRHIYRGQPRRHLLTT
Sbjct: 185 DTSTHGGFSVPRRAAEDCFAPLDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTT 244
Query: 229 GWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVV 288
GWS FV++K LVSGDAVLFLR E GELRLGIRRA ++G S + S N ++ V
Sbjct: 245 GWSIFVSQKNLVSGDAVLFLRDEGGELRLGIRRAARPRNGLP-DSIIEKNSCSNILSLVA 303
Query: 289 DAIARKRAFSISYNPSPLCRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERR 348
+A++ K F + Y+P RA+ +EF+IP K++ S+ +G RF+MRFE DD+ ERR
Sbjct: 304 NAVSTKSMFHVFYSP----RATHAEFVIPYEKYITSIRSPVCIGTRFRMRFEMDDSPERR 359
Query: 349 YTGVIMGVGDVDPVRWPGSKWRCLLVRWDD-VESNRHTRVSPWEIEPSGSVCGSNNLITS 407
GV+ GV D+DP RWP SKWRCLLVRWD+ S+ RVSPWEI+PS S+ + +
Sbjct: 360 CAGVVTGVCDLDPYRWPNSKWRCLLVRWDESFVSDHQERVSPWEIDPSVSLPHLSIQSSP 419
Query: 408 GLKRTRIGL-PSGKPEFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQNLHP 466
KR GL + P P+ G DF ES+R KVLQGQE +G + G D N
Sbjct: 420 RPKRPWAGLLDTTPPGNPITKRGGFLDFEESVRPSKVLQGQENIGSASPSQGFDVMN--- 476
Query: 467 SEVRRGILGSNGSGIAAIGDGSRNLQVKSDISYKGIG---IGFGESFRFHKVLQGQEI 521
+ + S+ + + + ++ + + G+ G + RF +VLQGQEI
Sbjct: 477 RRILDFAMQSHANPVL-VSSRVKD-RFGEFVDATGVNPACSGVMDLDRFPRVLQGQEI 532
Score = 54 (24.1 bits), Expect = 1.4e-114, Sum P(2) = 1.4e-114
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 666 RGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVASPLNPRSS 711
+GS+ +++ G C+LFGFSL E + + ++ + + ++ + S
Sbjct: 631 KGSELNMNASSG-CKLFGFSLPVETPASKPQSSSKRICTKVHKQGS 675
>TAIR|locus:2174013 [details] [associations]
symbol:ARF2 "auxin response factor 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP;TAS] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010047 "fruit dehiscence"
evidence=IMP] [GO:0010150 "leaf senescence" evidence=IMP]
[GO:0010227 "floral organ abscission" evidence=IMP] [GO:0008285
"negative regulation of cell proliferation" evidence=IMP]
[GO:0048481 "ovule development" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009737 "response to abscisic acid
stimulus" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0042744 "hydrogen peroxide catabolic process"
evidence=RCA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0009737 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0045892 GO:GO:0008285 GO:GO:0009734 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 GO:GO:0010150 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009911 GO:GO:0010047
GO:GO:0010227 GO:GO:0048481 EMBL:AY669787 EMBL:AB016880
EMBL:AF336918 EMBL:AF378862 EMBL:BT000784 EMBL:BT001072
EMBL:AK221252 EMBL:AK221254 EMBL:AK221274 EMBL:AK221277
EMBL:AK221282 EMBL:AK221305 EMBL:U89771 EMBL:AJ441313 EMBL:AJ458328
IPI:IPI00518739 RefSeq:NP_201006.2 RefSeq:NP_851244.1
RefSeq:NP_974980.1 UniGene:At.21704 ProteinModelPortal:Q94JM3
SMR:Q94JM3 DIP:DIP-46014N IntAct:Q94JM3 STRING:Q94JM3 PaxDb:Q94JM3
PRIDE:Q94JM3 EnsemblPlants:AT5G62000.1 EnsemblPlants:AT5G62000.2
EnsemblPlants:AT5G62000.3 GeneID:836321 KEGG:ath:AT5G62000
GeneFarm:3364 TAIR:At5g62000 eggNOG:NOG255064 InParanoid:Q94JM3
OMA:HTESVEC PhylomeDB:Q94JM3 ProtClustDB:CLSN2680590
Genevestigator:Q94JM3 GermOnline:AT5G62000 Uniprot:Q94JM3
Length = 859
Score = 906 (324.0 bits), Expect = 3.0e-95, Sum P(2) = 3.0e-95
Identities = 219/530 (41%), Positives = 302/530 (56%)
Query: 55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXX----YDLPPHPFCRVADVK 110
ELWHACAGPL+++P++ V YFPQGH+E V YDLP CRV +V
Sbjct: 61 ELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRVINVD 120
Query: 111 LHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTP-----HMFCKTL 165
L AEA +DEVYAQ++L+P+ + DE+++E A P H FCKTL
Sbjct: 121 LKAEADTDEVYAQITLLPEA------------NQDENAIEKEAPLPPPPRFQVHSFCKTL 168
Query: 166 TASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHL 225
TASDTSTHGGFSV RR A++C PPLD S+Q P+QELVAKDLH EWRFRHI+RGQPRRHL
Sbjct: 169 TASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHL 228
Query: 226 LTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVT 285
L +GWS FV+ K+LV+GDA +FLRGE+GELR+G+RRA + G S S S V
Sbjct: 229 LQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR-QQGNVPSSVISSHSMHLGVL 287
Query: 286 EVV-DAIARKRAFSISYNPSPLCRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDA 344
AI+ F++ Y P R S SEFI+P +++++S+ +++++GMRFKMRFE ++A
Sbjct: 288 ATAWHAISTGTMFTVYYKP----RTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEA 343
Query: 345 AERRYTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVES-NRHTRVSPWEIEPSGSVCGSNN 403
E+R+TG I+G+ + DP RWP SKWR L VRWD+ S R RVSPW++EP+ + +
Sbjct: 344 PEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVEPALAPPALSP 403
Query: 404 LITSGLKRTRIGLPSGKPEFPVPDGIGVT----DFGESLRFQKVLQGQEILGFNTLY-DG 458
+ KR R + P+ + G T D + +VLQGQE T + +
Sbjct: 404 VPMPRPKRPRSNIAPSSPDSSMLTREGTTKANMDPLPASGLSRVLQGQEYSTLRTKHTES 463
Query: 459 GDCQNLHPSEVRRGILGSNGSGIAAIGD---GSRNLQ--VKSDISYKGIGIGFGESFRFH 513
+C S V + + + + G GS N + + +Y + GFG +
Sbjct: 464 VECDAPENSVVWQSSADDDKVDVVS-GSRRYGSENWMSSARHEPTYTDLLSGFGTNI--- 519
Query: 514 KVLQGQEIFPKSPYGRAPTNNEARGIGSLGISDGVLVSGSRNRWSAVVPG 563
GQ I P + +P+ A+ I L S+G N+W + G
Sbjct: 520 DPSHGQRI-PFYDHSSSPSM-PAKRI--LSDSEGKF-DYLANQWQMIHSG 564
Score = 61 (26.5 bits), Expect = 3.0e-95, Sum P(2) = 3.0e-95
Identities = 27/98 (27%), Positives = 47/98 (47%)
Query: 642 QEVMDSIGQSNEHISPPLVGQP-TVRGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAA 700
+EV+++ Q+ + QP T++ ++ S +G+CRLFG LT N D+
Sbjct: 620 EEVVNA--QAQAQAREQVTKQPFTIQ--EETAKSREGNCRLFGIPLTNNM---NGTDSTM 672
Query: 701 PVASPLNPRSSFLSHVGQQFHPKPPVMS-KATGSNCTN 737
+ LN + L+ + PK +S ++ GS TN
Sbjct: 673 SQRNNLNDAAG-LTQIAS---PKVQDLSDQSKGSKSTN 706
>TAIR|locus:2025991 [details] [associations]
symbol:ARF1 "auxin response factor 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;IDA;IPI] [GO:0005634 "nucleus" evidence=ISM;IEA;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0010150 "leaf
senescence" evidence=IGI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009616 "virus
induced gene silencing" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016246
"RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892 GO:GO:0009733
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0010150 EMBL:AC007258 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:U83245 EMBL:AY133723 EMBL:BT002748
IPI:IPI00518211 IPI:IPI00520405 PIR:D96621 RefSeq:NP_001031208.1
RefSeq:NP_176184.1 RefSeq:NP_849830.1 UniGene:At.74832
ProteinModelPortal:Q8L7G0 SMR:Q8L7G0 IntAct:Q8L7G0 STRING:Q8L7G0
EnsemblPlants:AT1G59750.1 EnsemblPlants:AT1G59750.3 GeneID:842268
KEGG:ath:AT1G59750 GeneFarm:3363 TAIR:At1g59750 eggNOG:NOG257828
HOGENOM:HOG000241141 InParanoid:Q8L7G0 KO:K14486 OMA:QMPSFNL
PhylomeDB:Q8L7G0 ProtClustDB:CLSN2679699 Genevestigator:Q8L7G0
GermOnline:AT1G59750 Uniprot:Q8L7G0
Length = 665
Score = 855 (306.0 bits), Expect = 3.0e-89, Sum P(2) = 3.0e-89
Identities = 189/388 (48%), Positives = 240/388 (61%)
Query: 55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXX----XYDLPPHPFCRVADVK 110
ELWHACAGPL++LP+ G V YFP+GH+E + ++LP C+V +++
Sbjct: 22 ELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCKVINIQ 81
Query: 111 LHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDT 170
AE +DEVYAQ++L+P+ ++Q E D+ + T H FCKTLTASDT
Sbjct: 82 RRAEPETDEVYAQITLLPE--LDQS------EPTSPDAPVQEPEKCTVHSFCKTLTASDT 133
Query: 171 STHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGW 230
STHGGFSV RR A+DC PPLD SQQ P QELVA DLH EW FRHI+RGQPRRHLLTTGW
Sbjct: 134 STHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGW 193
Query: 231 SAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPS-FCSQQSSPNSV-TEVV 288
S FV+ KKLV+GDA +FLRGE+ ELR+G+RR H++ PS S S V
Sbjct: 194 SVFVSSKKLVAGDAFIFLRGENEELRVGVRR--HMRQQTNIPSSVISSHSMHIGVLATAA 251
Query: 289 DAIARKRAFSISYNPSPLCRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERR 348
AI FS+ Y P R S SEFI+ VN++L++ +VGMRFKMRFE ++A E+R
Sbjct: 252 HAITTGTIFSVFYKP----RTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFEGEEAPEKR 307
Query: 349 YTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVESN-RHTRVSPWEIEP--SGSVCGSNNLI 405
++G I+GV + W S+WR L V+WD+ S R RVSPWE+EP + S S
Sbjct: 308 FSGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPLVANSTPSSQPQP 367
Query: 406 TSGLKRTRI-GLPSGK--PEFPV-PDGI 429
KR R GLPS P PV PDG+
Sbjct: 368 PQRNKRPRPPGLPSPATGPSGPVTPDGV 395
Score = 55 (24.4 bits), Expect = 3.0e-89, Sum P(2) = 3.0e-89
Identities = 20/49 (40%), Positives = 23/49 (46%)
Query: 679 CRLFGFSLTEERHV-----ANIEDNAAPVASPLNPRSSFLSHVGQQFHP 722
CRLFGF L E +V A A V P+ P + F S GQQ P
Sbjct: 465 CRLFGFELVENVNVDECFSAASVSGAVAVDQPV-PSNEFDS--GQQSEP 510
Score = 37 (18.1 bits), Expect = 2.4e-87, Sum P(2) = 2.4e-87
Identities = 19/77 (24%), Positives = 28/77 (36%)
Query: 606 EKEQRVNCQSFFHNSEIYGGKHASSSFLDHSFRGGDQEVMDSIGQSNEHISPPLVGQP-- 663
E + VN F + + G + F G Q +I QS+ P G P
Sbjct: 471 ELVENVNVDECFSAASVSGAVAVDQPVPSNEFDSGQQSEPLNINQSD---IPSGSGDPEK 527
Query: 664 -TVRGSQDLVSSCKGSC 679
++R Q+ S SC
Sbjct: 528 SSLRSPQESQSRQIRSC 544
>TAIR|locus:2204237 [details] [associations]
symbol:ARF6 "auxin response factor 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=IMP] [GO:0009908 "flower development"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009886 "post-embryonic morphogenesis" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010051 "xylem and phloem
pattern formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733 GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC025295
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 HOGENOM:HOG000241141 EMBL:AF013467 EMBL:AY669788
EMBL:EU550049 EMBL:EU550050 EMBL:EU550051 EMBL:EU550052
EMBL:EU550053 EMBL:EU550054 EMBL:EU550055 EMBL:EU550056
EMBL:EU550057 EMBL:EU550058 EMBL:EU550059 EMBL:EU550060
EMBL:EU550061 EMBL:EU550062 EMBL:EU550063 EMBL:EU550064
EMBL:EU550065 EMBL:EU550066 EMBL:EU550067 EMBL:EU550068
EMBL:EU550069 EMBL:EU550070 EMBL:EU550071 EMBL:EU550072
IPI:IPI00533211 IPI:IPI00656643 PIR:F86427 RefSeq:NP_001031115.1
RefSeq:NP_174323.1 UniGene:At.21939 ProteinModelPortal:Q9ZTX8
SMR:Q9ZTX8 IntAct:Q9ZTX8 STRING:Q9ZTX8 PaxDb:Q9ZTX8 PRIDE:Q9ZTX8
EnsemblPlants:AT1G30330.2 GeneID:839913 KEGG:ath:AT1G30330
GeneFarm:3369 TAIR:At1g30330 eggNOG:NOG288258 InParanoid:Q9ZTX8
OMA:ANSHWRS PhylomeDB:Q9ZTX8 ProtClustDB:CLSN2686713
Genevestigator:Q9ZTX8 GermOnline:AT1G30330 Uniprot:Q9ZTX8
Length = 935
Score = 846 (302.9 bits), Expect = 2.1e-88, Sum P(2) = 2.1e-88
Identities = 189/391 (48%), Positives = 242/391 (61%)
Query: 55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXXY--DLPP-HP--FCRVADV 109
ELWHACAGPL+SLP GS VVYFPQGH E V+ + + P HP C++ +V
Sbjct: 25 ELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQLHNV 84
Query: 110 KLHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASD 169
+HA+ +DEVYAQ++L P EQK E G V ++ T + FCKTLTASD
Sbjct: 85 TMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELG------VPSRQPTNY-FCKTLTASD 137
Query: 170 TSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTG 229
TSTHGGFSVPRRAAE FPPLDYSQQ P+QEL+A+DLH EW+FRHI+RGQP+RHLLTTG
Sbjct: 138 TSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKFRHIFRGQPKRHLLTTG 197
Query: 230 WSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVD 289
WS FV+ K+LV+GD+VLF+ + +L LGIRRA ++ S +
Sbjct: 198 WSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAH 257
Query: 290 AIARKRAFSISYNPSPLCRASASEFIIPVNKFLKSLDHS-FAVGMRFKMRFETDDAAERR 348
A A F+I YNP RAS SEF+IP+ K++K++ H+ +VGMRF+M FET++++ RR
Sbjct: 258 AAATNSRFTIFYNP----RASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRR 313
Query: 349 YTGVIMGVGDVDPVRWPGSKWRCLLVRWDD-VESNRHTRVSPWEIEPSGSVCGSNNLITS 407
Y G I G+ D+DP RW S WR + V WD+ R RVS WEIEP + +
Sbjct: 314 YMGTITGICDLDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPL 373
Query: 408 GLKRTRIGLPSGKPEFPVPDGIGVTDFGESL 438
LKR P G P F G+ D G S+
Sbjct: 374 RLKRP---WPPGLPSF---HGLKEDDMGMSM 398
Score = 56 (24.8 bits), Expect = 2.1e-88, Sum P(2) = 2.1e-88
Identities = 24/96 (25%), Positives = 42/96 (43%)
Query: 590 SNPISNYNPPYSLNDQEKEQRV----NCQSFFHNSEIYGGKHASSSFLDHSFRGGD--QE 643
+NPIS + S Q++ ++ S +S + A S HS G + Q
Sbjct: 616 NNPISPLHTLLSNFSQDESSQLLHLTRTNSAMTSSGWPSKRPAVDSSFQHSGAGNNNTQS 675
Query: 644 VMDSIGQSN-EHISPPLVGQPTVRGSQDLVSSCKGS 678
V++ +GQS+ ++ P V P G ++ +GS
Sbjct: 676 VLEQLGQSHTSNVPPNAVSLPPFPGGRECSIEQEGS 711
>TAIR|locus:2152642 [details] [associations]
symbol:ARF8 "auxin response factor 8" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS;TAS]
[GO:0009733 "response to auxin stimulus" evidence=IMP] [GO:0009908
"flower development" evidence=IGI] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0009886 "post-embryonic
morphogenesis" evidence=RCA] [GO:0009887 "organ morphogenesis"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009733 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009908 HOGENOM:HOG000241141
ProtClustDB:CLSN2686713 EMBL:AF042196 EMBL:AY669790 EMBL:AB024026
IPI:IPI00525703 IPI:IPI00846789 RefSeq:NP_001078672.1
RefSeq:NP_198518.1 UniGene:At.23446 ProteinModelPortal:Q9FGV1
SMR:Q9FGV1 IntAct:Q9FGV1 STRING:Q9FGV1 PaxDb:Q9FGV1 PRIDE:Q9FGV1
EnsemblPlants:AT5G37020.1 GeneID:833672 KEGG:ath:AT5G37020
GeneFarm:3372 TAIR:At5g37020 eggNOG:NOG292968 InParanoid:Q9FGV1
OMA:NDAYLPA PhylomeDB:Q9FGV1 Genevestigator:Q9FGV1
GermOnline:AT5G37020 Uniprot:Q9FGV1
Length = 811
Score = 854 (305.7 bits), Expect = 1.5e-87, Sum P(2) = 1.5e-87
Identities = 186/402 (46%), Positives = 246/402 (61%)
Query: 55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXXY-----DLPPHPFCRVADV 109
ELWHACAGPL+SLP GS VVYFPQGH E V+ + LPP C++ +V
Sbjct: 22 ELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLICQLHNV 81
Query: 110 KLHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASD 169
+HA+ +DEVYAQ++L P EQK IE G + + FCKTLTASD
Sbjct: 82 TMHADVETDEVYAQMTLQPLTPEEQKETFVPIELG-------IPSKQPSNYFCKTLTASD 134
Query: 170 TSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTG 229
TSTHGGFSVPRRAAE FPPLDY+ Q P+QEL+A+DLH +EW+FRHI+RGQP+RHLLTTG
Sbjct: 135 TSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTG 194
Query: 230 WSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVD 289
WS FV+ K+LV+GD+V+F+R E +L LGIR A ++ S +
Sbjct: 195 WSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSSVLSSDSMHIGLLAAAAH 254
Query: 290 AIARKRAFSISYNPSPLCRASASEFIIPVNKFLKSLDHS-FAVGMRFKMRFETDDAAERR 348
A A F++ ++P RAS SEF+I ++K++K++ H+ +VGMRF+M FET++++ RR
Sbjct: 255 ASATNSCFTVFFHP----RASQSEFVIQLSKYIKAVFHTRISVGMRFRMLFETEESSVRR 310
Query: 349 YTGVIMGVGDVDPVRWPGSKWRCLLVRWDD-VESNRHTRVSPWEIEPSGSVCGSNNLITS 407
Y G I G+ D+D VRWP S WR + V WD+ R RVS WEIEP + +L
Sbjct: 311 YMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPL 370
Query: 408 GLKRT-RIGLPSGKPEFPVPDGIGVTDFGESLRFQKVLQGQE 448
LKR G S +PDG G D G L + + G++
Sbjct: 371 RLKRPWHAGTSS------LPDGRG--DLGSGLTWLRGGGGEQ 404
Score = 40 (19.1 bits), Expect = 1.5e-87, Sum P(2) = 1.5e-87
Identities = 22/108 (20%), Positives = 41/108 (37%)
Query: 605 QEKEQRVNCQSFFHNSEIYGGKHASSSFLDHSFRGGDQEVMDSIGQSNEHISPPLVGQPT 664
QE + QS HNS++ + H Q + +++ Q N + + QP
Sbjct: 463 QEPHHQYLQQSASHNSDLMLQQQQQQQASRHLMHAQTQIMSENLPQQN--MRQEVSNQPA 520
Query: 665 VRGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVASPLNPRSSF 712
G Q + + L F + + H+ + + + SP +S F
Sbjct: 521 --GQQQQLQQPDQNAYLNAFKM-QNGHLQQWQQQSE-MPSPSFMKSDF 564
>TAIR|locus:2202205 [details] [associations]
symbol:ARF19 "auxin response factor 19" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0009733 "response to auxin stimulus"
evidence=RCA;IMP;NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0048366 "leaf
development" evidence=IGI] [GO:0048527 "lateral root development"
evidence=IGI;RCA] [GO:0009723 "response to ethylene stimulus"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0010311
"lateral root formation" evidence=IGI] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009741 "response to brassinosteroid stimulus"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0045010
"actin nucleation" evidence=RCA] [GO:0048765 "root hair cell
differentiation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0046983 "protein dimerization activity"
evidence=IDA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0009723 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0046983 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010311 GO:GO:0048366 HOGENOM:HOG000241141
EMBL:U53672 EMBL:AY008390 EMBL:AY669794 EMBL:AC069143 EMBL:AB493467
EMBL:AJ441312 IPI:IPI00534870 PIR:G86325 RefSeq:NP_173356.1
UniGene:At.10488 ProteinModelPortal:Q8RYC8 SMR:Q8RYC8 IntAct:Q8RYC8
STRING:Q8RYC8 EnsemblPlants:AT1G19220.1 GeneID:838505
KEGG:ath:AT1G19220 GeneFarm:3421 TAIR:At1g19220 eggNOG:NOG331338
InParanoid:Q8RYC8 OMA:WEIEPVI PhylomeDB:Q8RYC8
ProtClustDB:CLSN2914206 Genevestigator:Q8RYC8 GermOnline:AT1G19220
Uniprot:Q8RYC8
Length = 1086
Score = 837 (299.7 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
Identities = 175/348 (50%), Positives = 222/348 (63%)
Query: 52 VSLELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXX---Y-DLPPHPFCRVA 107
++ +LWHACAGPL+SLP GS+VVYFPQGH E V+ Y +LP C +
Sbjct: 20 INSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPNYPNLPSKLICLLH 79
Query: 108 DVKLHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTA 167
V LHA+ +DEVYAQ++L P + + RE + D + + T FCKTLTA
Sbjct: 80 SVTLHADTETDEVYAQMTLQP---VNKYDREALLAS---DMGLKLNRQPT-EFFCKTLTA 132
Query: 168 SDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLT 227
SDTSTHGGFSVPRRAAE FPPLD+S Q P+QE+VAKDLH W FRHIYRGQP+RHLLT
Sbjct: 133 SDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLT 192
Query: 228 TGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEV 287
TGWS FV+ K+L +GD+VLF+R E +L LGIRRA + S +
Sbjct: 193 TGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLSSSVISSDSMHIGILAAA 252
Query: 288 VDAIARKRAFSISYNPSPLCRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAER 347
A A F+I +NP RAS SEF++P+ K+ K+L ++GMRF+M FET+D R
Sbjct: 253 AHANANSSPFTIFFNP----RASPSEFVVPLAKYNKALYAQVSLGMRFRMMFETEDCGVR 308
Query: 348 RYTGVIMGVGDVDPVRWPGSKWRCLLVRWDD-VESNRHTRVSPWEIEP 394
RY G + G+ D+DPVRW GS+WR L V WD+ +R +RVS WEIEP
Sbjct: 309 RYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWEIEP 356
Score = 42 (19.8 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
Identities = 34/132 (25%), Positives = 51/132 (38%)
Query: 425 VPDGIGVTDFGESLRFQKV--LQGQEILGFNTLYDGGDCQNLHPSEVRRGILGSNGSGIA 482
V D I V+ G + V +Q Q+ + GDCQ+ HP R L G+ A
Sbjct: 825 VTDQIDVSTAGTTYCPDVVGPVQQQQTFPLPSFGFDGDCQSHHP----RNNLAFPGNLEA 880
Query: 483 AIGDGSRNLQVKSDISYKGIGIGFGESFR-FHKVLQGQEI------FPKSPYGRAPTNNE 535
D L + D ++ + +G + R L I P P+ + +NE
Sbjct: 881 VTSDP---LYSQKD--FQNLVPNYGNTPRDIETELSSAAISSQSFGIPSIPF-KPGCSNE 934
Query: 536 ARGIGSLGISDG 547
GI GI +G
Sbjct: 935 VGGINDSGIMNG 946
Score = 39 (18.8 bits), Expect = 1.2e-85, Sum P(2) = 1.2e-85
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 416 LPSGKPEFPVPDGIGVTDFGESLRFQ 441
LPS F +P+ D + L FQ
Sbjct: 436 LPSALSSFNLPNNFASNDPSKLLNFQ 461
>TAIR|locus:2035454 [details] [associations]
symbol:MP "MONOPTEROS" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IEP]
[GO:0009725 "response to hormone stimulus" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS;TAS] [GO:0009733 "response to auxin
stimulus" evidence=IEP;RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0016020 "membrane" evidence=IDA] [GO:0009790 "embryo
development" evidence=IGI] [GO:0009908 "flower development"
evidence=IGI] [GO:0010305 "leaf vascular tissue pattern formation"
evidence=IGI] [GO:0048364 "root development" evidence=IGI]
[GO:0048507 "meristem development" evidence=IGI;RCA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0009741
"response to brassinosteroid stimulus" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0009886
"post-embryonic morphogenesis" evidence=RCA] [GO:0009887 "organ
morphogenesis" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=IMP;RCA] [GO:0010073 "meristem maintenance" evidence=RCA]
[GO:0010090 "trichome morphogenesis" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0048527
"lateral root development" evidence=RCA] [GO:0048765 "root hair
cell differentiation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0009942 "longitudinal axis specification"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0016020 GO:GO:0003700 GO:GO:0006351
GO:GO:0048364 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0044212 GO:GO:0009908 GO:GO:0048507
EMBL:AC007797 KO:K14486 EMBL:AF037228 EMBL:AF037229 EMBL:AF334716
EMBL:BT002050 EMBL:BT008805 EMBL:AB199792 EMBL:U79557 EMBL:EF598523
EMBL:EF598524 EMBL:EF598525 EMBL:EF598526 EMBL:EF598527
EMBL:EF598528 EMBL:EF598529 EMBL:EF598530 EMBL:EF598531
EMBL:EF598532 EMBL:EF598533 EMBL:EF598534 EMBL:EF598535
EMBL:EF598536 EMBL:EF598537 EMBL:EF598538 EMBL:EF598539
EMBL:EF598540 EMBL:EF598541 EMBL:EF598542 EMBL:EF598543
EMBL:EF598544 EMBL:EF598545 EMBL:EF598546 IPI:IPI00538603
PIR:G86331 PIR:T51807 RefSeq:NP_173414.1 UniGene:At.10494
UniGene:At.41731 ProteinModelPortal:P93024 SMR:P93024 IntAct:P93024
STRING:P93024 PaxDb:P93024 PRIDE:P93024 EnsemblPlants:AT1G19850.1
GeneID:838573 KEGG:ath:AT1G19850 GeneFarm:3368 TAIR:At1g19850
eggNOG:NOG291711 InParanoid:P93024 OMA:ARYNKAT PhylomeDB:P93024
ProtClustDB:CLSN2682929 Genevestigator:P93024 GermOnline:AT1G19850
GO:GO:0010305 GO:GO:0009942 Uniprot:P93024
Length = 902
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 184/368 (50%), Positives = 234/368 (63%)
Query: 52 VSLELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXX----Y-DLPPHPFCRV 106
++ ELWHACAGPL+ LP+ GS+V YF QGH E V+ Y +LP C+V
Sbjct: 51 INSELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQV 110
Query: 107 ADVKLHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTP-HMFCKTL 165
+V LHA+ SDE+YAQ+SL P E+ V + D ++ S P FCKTL
Sbjct: 111 HNVTLHADKDSDEIYAQMSLQPVHS-ERDVFP--VPD-----FGMLRGSKHPTEFFCKTL 162
Query: 166 TASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHL 225
TASDTSTHGGFSVPRRAAE FPPLDYS Q P+QELV +DLH W FRHIYRGQP+RHL
Sbjct: 163 TASDTSTHGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHL 222
Query: 226 LTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVT 285
LTTGWS FV K+L +GD+VLF+R E +L +G+RRA ++ + +
Sbjct: 223 LTTGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLA 282
Query: 286 EVVDAIARKRAFSISYNPSPLCRASASEFIIPVNKFLKSLDHS-FAVGMRFKMRFETDDA 344
A A + F I YNP RA +EF+IP+ K+ K++ S +VGMRF M FET+D+
Sbjct: 283 AAAHATANRTPFLIFYNP----RACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDS 338
Query: 345 AERRYTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVESN-RHTRVSPWEIEPSGSVCGSNN 403
+RRY G I+G+ D+DP+RWPGSKWR L V WD+ N + TRVSPW+IE S+ +
Sbjct: 339 GKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIETPESLFIFPS 398
Query: 404 LITSGLKR 411
L TSGLKR
Sbjct: 399 L-TSGLKR 405
>TAIR|locus:2039124 [details] [associations]
symbol:ARF11 "auxin response factor 11" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0009506
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC006526 EMBL:AC006418
HOGENOM:HOG000241141 EMBL:AY669791 EMBL:AK229757 EMBL:BX837073
EMBL:AK229924 IPI:IPI00544804 IPI:IPI00547357 IPI:IPI00656718
PIR:A84904 RefSeq:NP_001031548.1 RefSeq:NP_182176.2
RefSeq:NP_973701.1 UniGene:At.36497 ProteinModelPortal:Q9ZPY6
SMR:Q9ZPY6 PRIDE:Q9ZPY6 EnsemblPlants:AT2G46530.3 GeneID:819264
KEGG:ath:AT2G46530 GeneFarm:3388 TAIR:At2g46530 eggNOG:NOG303653
InParanoid:Q9ZPY6 OMA:MFEIEGE PhylomeDB:Q9ZPY6
ProtClustDB:CLSN2681223 ArrayExpress:Q9ZPY6 Genevestigator:Q9ZPY6
Uniprot:Q9ZPY6
Length = 622
Score = 800 (286.7 bits), Expect = 4.0e-83, Sum P(2) = 4.0e-83
Identities = 169/348 (48%), Positives = 218/348 (62%)
Query: 55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHV-----SDFXXXXXXXYDLPPHPFCRVADV 109
ELW ACAGPL+ +P+ G V YFPQGH+E + ++LPP CRV V
Sbjct: 42 ELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPPKILCRVLSV 101
Query: 110 KLHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASD 169
L AE +DEVYAQ++L P+E +Q E D V T F K LTASD
Sbjct: 102 TLKAEHETDEVYAQITLQPEE--DQS------EPTSLDPPLVEPAKPTVDSFVKILTASD 153
Query: 170 TSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTG 229
TSTHGGFSV R+ A +C P LD +Q P+QELVA+DLHG EWRF+HI+RGQPRRHLLTTG
Sbjct: 154 TSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTG 213
Query: 230 WSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFP-SFCSQQSSPNSVTEVV 288
WS FV K+LV+GDA +FLRGE G+LR+G+RR K +T P S S QS V
Sbjct: 214 WSTFVTSKRLVAGDAFVFLRGETGDLRVGVRRL--AKQQSTMPASVISSQSMRLGVLATA 271
Query: 289 D-AIARKRAFSISYNPSPLCRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAER 347
A+ F + Y P S+FII VNK++ ++ + F++GMR++MRFE +++ ER
Sbjct: 272 SHAVTTTTIFVVFYKPR------ISQFIISVNKYMMAMKNGFSLGMRYRMRFEGEESPER 325
Query: 348 RYTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVES-NRHTRVSPWEIEP 394
+TG I+G GD+ +WP SKWR L ++WD+ S R +VSPWEIEP
Sbjct: 326 IFTGTIIGSGDLSS-QWPASKWRSLQIQWDEPSSIQRPNKVSPWEIEP 372
Score = 52 (23.4 bits), Expect = 4.0e-83, Sum P(2) = 4.0e-83
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 678 SCRLFGFSLTEERHVANI 695
SCRLFGF LT + A I
Sbjct: 455 SCRLFGFDLTSKPASATI 472
>TAIR|locus:2076765 [details] [associations]
symbol:ARF18 "auxin response factor 18" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AL132959 HOGENOM:HOG000241141 EMBL:AF334717
EMBL:AY059746 EMBL:AY070463 EMBL:AY091392 EMBL:AK229945
IPI:IPI00524053 PIR:T47975 RefSeq:NP_567119.1 UniGene:At.17167
UniGene:At.69165 ProteinModelPortal:Q9C5W9 SMR:Q9C5W9 IntAct:Q9C5W9
EnsemblPlants:AT3G61830.1 GeneID:825356 KEGG:ath:AT3G61830
GeneFarm:3414 TAIR:At3g61830 eggNOG:NOG268528 InParanoid:Q9C5W9
OMA:RISQFIV PhylomeDB:Q9C5W9 ProtClustDB:CLSN2917487
Genevestigator:Q9C5W9 GermOnline:AT3G61830 Uniprot:Q9C5W9
Length = 602
Score = 800 (286.7 bits), Expect = 9.4e-82, Sum P(2) = 9.4e-82
Identities = 176/381 (46%), Positives = 229/381 (60%)
Query: 55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHV-----SDFXXXXXXXYDLPPHPFCRVADV 109
ELW CAGPL+ +P+ V YFPQGH+E + +DLPP CRV DV
Sbjct: 25 ELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVFDLPPKILCRVLDV 84
Query: 110 KLHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASD 169
L AE +DEVYAQ++L P+E +Q E D V H F K LTASD
Sbjct: 85 TLKAEHETDEVYAQITLQPEE--DQS------EPTSLDPPIVGPTKQEFHSFVKILTASD 136
Query: 170 TSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTG 229
TSTHGGFSV R+ A +C P LD +Q P+QELV +DLHG EWRF+HI+RGQPRRHLLTTG
Sbjct: 137 TSTHGGFSVLRKHATECLPSLDMTQATPTQELVTRDLHGFEWRFKHIFRGQPRRHLLTTG 196
Query: 230 WSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFP-SFCSQQSSPNSVTEVV 288
WS FV+ K+LV+GDA +FLRGE+G+LR+G+RR +S T P S S QS V
Sbjct: 197 WSTFVSSKRLVAGDAFVFLRGENGDLRVGVRRLARHQS--TMPTSVISSQSMHLGVLATA 254
Query: 289 D-AIARKRAFSISYNPSPLCRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAER 347
A+ F + Y P S+FI+ VNK+++++ H F++G RF+MRFE +++ ER
Sbjct: 255 SHAVRTTTIFVVFYKPR------ISQFIVGVNKYMEAIKHGFSLGTRFRMRFEGEESPER 308
Query: 348 RYTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVES-NRHTRVSPWEIEP---SGSVCGSNN 403
+TG I+G GD+ +WP SKWR L V+WD+ + R +VSPWEIEP + +
Sbjct: 309 IFTGTIVGSGDLSS-QWPASKWRSLQVQWDEPTTVQRPDKVSPWEIEPFLATSPISTPAQ 367
Query: 404 LITSGLKRTRIGLPSGKPEFP 424
S KR+R PS K P
Sbjct: 368 QPQSKCKRSRPIEPSVKTPAP 388
Score = 39 (18.8 bits), Expect = 9.4e-82, Sum P(2) = 9.4e-82
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 678 SCRLFGFSLTEERHVANIEDN-------AAPVASPLNPRS 710
S RLFGF LT +D AA P+ P S
Sbjct: 439 SYRLFGFDLTSNSPAPIPQDKQPMDTCGAAKCQEPITPTS 478
>TAIR|locus:2138096 [details] [associations]
symbol:ARF9 "auxin response factor 9" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 HOGENOM:HOG000241141
EMBL:AF082176 EMBL:AC002343 EMBL:AL078468 EMBL:AL161560
EMBL:AF344312 EMBL:AK221865 EMBL:AK228263 IPI:IPI00519218
IPI:IPI00657180 PIR:T08917 RefSeq:NP_001031706.1 RefSeq:NP_194129.1
UniGene:At.3396 ProteinModelPortal:Q9XED8 SMR:Q9XED8 IntAct:Q9XED8
PaxDb:Q9XED8 PRIDE:Q9XED8 EnsemblPlants:AT4G23980.1 GeneID:828498
KEGG:ath:AT4G23980 GeneFarm:3373 TAIR:At4g23980 eggNOG:NOG300390
InParanoid:Q9XED8 OMA:YAQITLI PhylomeDB:Q9XED8
ProtClustDB:CLSN2685375 Genevestigator:Q9XED8 Uniprot:Q9XED8
Length = 638
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 167/347 (48%), Positives = 219/347 (63%)
Query: 55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXX-----YDLPPHPFCRVADV 109
ELW CAGPL+ +P+ V YFPQGH+E + + LPP C V +V
Sbjct: 12 ELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPPKILCNVMNV 71
Query: 110 KLHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASD 169
L AE +DEVYAQ++L+P + +V E D ++ H F K LTASD
Sbjct: 72 SLQAEKDTDEVYAQITLIP---VGTEVDEPMSPDPSPPELQ----RPKVHSFSKVLTASD 124
Query: 170 TSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTG 229
TSTHGGFSV R+ A +C PPLD +QQ P+QELVA+D+HG +W+F+HI+RGQPRRHLLTTG
Sbjct: 125 TSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTG 184
Query: 230 WSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVV- 288
WS FV K+LV+GD +FLRGE+GELR+G+RRA +++ + S S S V
Sbjct: 185 WSTFVTSKRLVAGDTFVFLRGENGELRVGVRRA-NLQQSSMPSSVISSHSMHLGVLATAR 243
Query: 289 DAIARKRAFSISYNPSPLCRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERR 348
A K F + Y P S+FII +NK+L+++ + F+VGMRFKMRFE +D+ ERR
Sbjct: 244 HATQTKTMFIVYYKPR------TSQFIISLNKYLEAMSNKFSVGMRFKMRFEGEDSPERR 297
Query: 349 YTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVES-NRHTRVSPWEIEP 394
Y+G ++GV D P W SKWRCL V WD+ S +R +VSPWEIEP
Sbjct: 298 YSGTVIGVKDCSP-HWKDSKWRCLEVHWDEPASISRPNKVSPWEIEP 343
>TAIR|locus:2014731 [details] [associations]
symbol:ARF14 "auxin response factor 14" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC007887 IPI:IPI00548517 PIR:G86476
RefSeq:NP_174786.1 UniGene:At.39556 ProteinModelPortal:Q9LQE8
SMR:Q9LQE8 IntAct:Q9LQE8 PRIDE:Q9LQE8 EnsemblPlants:AT1G35540.1
GeneID:840450 KEGG:ath:AT1G35540 GeneFarm:3394 TAIR:At1g35540
OMA:DITEDAM PhylomeDB:Q9LQE8 Genevestigator:Q9LQE8 Uniprot:Q9LQE8
Length = 605
Score = 710 (255.0 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
Identities = 158/345 (45%), Positives = 204/345 (59%)
Query: 55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXXY----DLPPHPFCRVADVK 110
+LW CAGPL +PK G V YFPQGH+E V D P CRV ++
Sbjct: 27 QLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPICDFPSKLQCRVIAIQ 86
Query: 111 LHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDT 170
L E SDE YA+++L+PD Q V I +++ + S F K LTASDT
Sbjct: 87 LKVENNSDETYAEITLMPDTT--QVV----IPTQNQNQFRPLVNS-----FTKVLTASDT 135
Query: 171 STHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGW 230
S HGGFSVP++ A +C PPLD SQ P+QE++A DLHG +WRFRHIYRG +RHLLT GW
Sbjct: 136 SVHGGFSVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFRHIYRGTAQRHLLTIGW 195
Query: 231 SAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSV-TEVVD 289
+AF KKLV GD ++F+RGE GELR+GIRRA H + G S S +S + +
Sbjct: 196 NAFTTSKKLVEGDVIVFVRGETGELRVGIRRAGH-QQGNIPSSIVSIESMRHGIIASAKH 254
Query: 290 AIARKRAFSISYNPSPLCRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRY 349
A + F + Y P +S+FI+ +KFL +++ F VG RF MRFE DD +ERR
Sbjct: 255 AFDNQCMFIVVYKPR------SSQFIVSYDKFLDVVNNKFNVGSRFTMRFEGDDFSERRS 308
Query: 350 TGVIMGVGDVDPVRWPGSKWRCLLVRWDDVES-NRHTRVSPWEIE 393
G I+GV D P W S+WR L V+WD+ S R +VSPW+IE
Sbjct: 309 FGTIIGVSDFSP-HWKCSEWRSLEVQWDEFASFPRPNQVSPWDIE 352
Score = 53 (23.7 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 630 SSFLDHSFRGGDQEVMDSIGQSNEHISPPLVGQPTVRGSQDLVSSCKGSCR 680
SSFL + R +EV + IG S+ H+ PP + Q G Q + + S R
Sbjct: 363 SSFLKNK-RS--REV-NEIGSSSSHLLPPTLTQGQEIGQQSMATPMNISLR 409
Score = 37 (18.1 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
Identities = 19/74 (25%), Positives = 29/74 (39%)
Query: 669 QDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVASPLNPRSSFLSHVGQQFHPKPP--V 726
+++ ++ S RLFG SL + + + S L F GQ + P +
Sbjct: 446 ENITTNAVASFRLFGVSLATPSVIKDPVEQIGLEISRLTQEKKF----GQSQILRSPTEI 501
Query: 727 MSKATGSN--CTNV 738
SK S CT V
Sbjct: 502 QSKQFSSTRTCTKV 515
>TAIR|locus:2036288 [details] [associations]
symbol:ARF22 "auxin response factor 22" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 ProtClustDB:CLSN2681760
EMBL:AC023913 EMBL:AY669796 IPI:IPI00545778 PIR:C86468
RefSeq:NP_174699.2 UniGene:At.51186 ProteinModelPortal:Q9C8N7
SMR:Q9C8N7 IntAct:Q9C8N7 EnsemblPlants:AT1G34390.1 GeneID:840341
KEGG:ath:AT1G34390 GeneFarm:3426 TAIR:At1g34390 OMA:NITTNAN
PhylomeDB:Q9C8N7 Genevestigator:Q9C8N7 Uniprot:Q9C8N7
Length = 598
Score = 709 (254.6 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
Identities = 160/345 (46%), Positives = 207/345 (60%)
Query: 55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXXY----DLPPHPFCRVADVK 110
+LW CAGPL +PK G + YFPQG++E V DLP CRV ++
Sbjct: 27 QLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELNELKPICDLPSKLQCRVIAIQ 86
Query: 111 LHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDT 170
L E SDE YA+++L+PD Q V I +E+ + S F K LTASDT
Sbjct: 87 LKVENNSDETYAEITLMPDTT--QVV----IPTQNENQFRPLVNS-----FTKVLTASDT 135
Query: 171 STHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGW 230
S GGF VP++ A +C PPLD SQ P+QEL+A DLHG +WRF H YRG P+RHLLTTGW
Sbjct: 136 S--GGFFVPKKHAIECLPPLDMSQPLPTQELLATDLHGNQWRFNHNYRGTPQRHLLTTGW 193
Query: 231 SAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSV-TEVVD 289
+AF KKLV+GD ++F+RGE GELR+GIRRA H + G S S +S + V
Sbjct: 194 NAFTTSKKLVAGDVIVFVRGETGELRVGIRRAGH-QQGNIPSSIISIESMRHGVIASAKH 252
Query: 290 AIARKRAFSISYNPSPLCRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRY 349
A + F + Y P +S+FI+ +KFL ++++ F VG RF MRFE DD +ERRY
Sbjct: 253 AFDNQCMFIVVYKPR------SSQFIVSYDKFLDAVNNKFNVGSRFTMRFEGDDFSERRY 306
Query: 350 TGVIMGVGDVDPVRWPGSKWRCLLVRWDDVES-NRHTRVSPWEIE 393
G I+GV D P W S+WR L V+WD+ S +R +VSPWEIE
Sbjct: 307 FGTIIGVSDFSP-HWKCSEWRNLEVQWDEFASFSRPNKVSPWEIE 350
Score = 46 (21.3 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 645 MDSIGQSNEHISPPLVGQPTVRGSQDLVS 673
++ IG S+ H+ PP++ Q G + S
Sbjct: 372 VNEIGSSSSHLLPPILTQGQEIGQLSVAS 400
>TAIR|locus:2126460 [details] [associations]
symbol:ARF16 "auxin response factor 16" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0009733 "response to auxin
stimulus" evidence=IEP] [GO:0048829 "root cap development"
evidence=IGI;IMP] [GO:0051301 "cell division" evidence=IGI]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009733 GO:GO:0009734
GO:GO:0051301 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL161576 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0035198 GO:GO:0007389
HOGENOM:HOG000241141 eggNOG:NOG315592 EMBL:AL078464 EMBL:AY059792
EMBL:AY091198 EMBL:EU550120 EMBL:EU550121 EMBL:EU550122
EMBL:EU550123 EMBL:EU550124 EMBL:EU550125 EMBL:EU550126
EMBL:EU550127 EMBL:EU550128 EMBL:EU550129 EMBL:EU550130
EMBL:EU550131 EMBL:EU550132 EMBL:EU550133 EMBL:EU550134
EMBL:EU550135 EMBL:EU550136 EMBL:EU550137 EMBL:EU550138
EMBL:EU550139 EMBL:EU550140 EMBL:EU550141 EMBL:EU550142
EMBL:EU550143 IPI:IPI00528149 PIR:T08984 RefSeq:NP_567841.1
UniGene:At.3365 ProteinModelPortal:Q93YR9 SMR:Q93YR9 IntAct:Q93YR9
STRING:Q93YR9 EnsemblPlants:AT4G30080.1 GeneID:829131
KEGG:ath:AT4G30080 GeneFarm:3406 TAIR:At4g30080 InParanoid:Q93YR9
OMA:GHAENAY PhylomeDB:Q93YR9 ProtClustDB:CLSN2917636
Genevestigator:Q93YR9 GermOnline:AT4G30080 Uniprot:Q93YR9
Length = 670
Score = 537 (194.1 bits), Expect = 7.7e-73, Sum P(3) = 7.7e-73
Identities = 107/211 (50%), Positives = 142/211 (67%)
Query: 55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXXYDLPPHPFCRVADVKLHAE 114
+LWHACAG ++ +P S V YFPQGH E+ D +PP CRV +K A+
Sbjct: 19 QLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCVDFGNL--PIPPMVLCRVLAIKYMAD 76
Query: 115 AASDEVYAQVSLVP---DELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDTS 171
A SDEV+A++ L+P DE ++ + +G+ +G E + E TP F KTLT SD +
Sbjct: 77 AESDEVFAKLRLIPLKDDEYVDHEYGDGEDSNGFESNSE-----KTPS-FAKTLTQSDAN 130
Query: 172 THGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWS 231
GGFSVPR AE FP LDY+ + P Q ++AKD+HG W+FRHIYRG PRRHLLTTGWS
Sbjct: 131 NGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTPRRHLLTTGWS 190
Query: 232 AFVNKKKLVSGDAVLFLRGEDGELRLGIRRA 262
FVN+KKLV+GD+++F+R E+G+L +GIRRA
Sbjct: 191 NFVNQKKLVAGDSIVFMRAENGDLCVGIRRA 221
Score = 184 (69.8 bits), Expect = 7.7e-73, Sum P(3) = 7.7e-73
Identities = 42/113 (37%), Positives = 59/113 (52%)
Query: 283 SVTEVVDAIARKRAFSISYNPSPLCRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETD 342
SV E R F + Y P RAS SEF + ++ + GMRFKM FET+
Sbjct: 275 SVIEAATLAISGRPFEVVYYP----RASTSEFCVKALDARAAMRIPWCSGMRFKMAFETE 330
Query: 343 DAAERR-YTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVESNRHT-RVSPWEIE 393
D++ + G + V DP+RWP S WR L V WD+ + ++ RV+PW +E
Sbjct: 331 DSSRISWFMGTVSAVNVSDPIRWPNSPWRLLQVAWDEPDLLQNVKRVNPWLVE 383
Score = 46 (21.3 bits), Expect = 7.7e-73, Sum P(3) = 7.7e-73
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 443 VLQGQEILGFNTLYDGG--DCQNLHPSEVRRGILGSNGSGIA 482
VL G+ IL L + G D N+ +++ G GSN +G+A
Sbjct: 520 VLFGKLILPEEQLSEKGSTDTANIEKTQISSG--GSNQNGVA 559
>TAIR|locus:2009298 [details] [associations]
symbol:ARF21 "auxin response factor 21" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC023279 EMBL:AC023913 IPI:IPI00539451
PIR:E86468 RefSeq:NP_174701.2 UniGene:At.51930
ProteinModelPortal:Q9C8N9 SMR:Q9C8N9 EnsemblPlants:AT1G34410.1
GeneID:840344 KEGG:ath:AT1G34410 GeneFarm:3425 TAIR:At1g34410
PhylomeDB:Q9C8N9 Genevestigator:Q9C8N9 GermOnline:AT1G34410
Uniprot:Q9C8N9
Length = 606
Score = 707 (253.9 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 158/345 (45%), Positives = 204/345 (59%)
Query: 55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXXY----DLPPHPFCRVADVK 110
+LW CAGPL +PK G V YFPQG++E V DLP CRV +
Sbjct: 27 QLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNELQPICDLPSKLQCRVIAIH 86
Query: 111 LHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDT 170
L E SDE+YA+++L+PD Q V I E+ + S F K LTASDT
Sbjct: 87 LKVENNSDEIYAEITLMPDTT--QVV----IPTQSENRFRPLVNS-----FTKVLTASDT 135
Query: 171 STHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGW 230
S +GGFSVP++ A +C PPLD SQ P+QE++A DLH +WRFRH YRG P+RH LTTGW
Sbjct: 136 SAYGGFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNQWRFRHNYRGTPQRHSLTTGW 195
Query: 231 SAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSV-TEVVD 289
+ F+ KKLV GD ++F+RGE GELR+GIRRA H + G S S + V
Sbjct: 196 NEFITSKKLVKGDVIVFVRGETGELRVGIRRARH-QQGNIPSSIVSIDCMRHGVIASAKH 254
Query: 290 AIARKRAFSISYNPSPLCRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRY 349
A + F + Y P +S+FI+ +KFL ++++ F VG RF MRFE DD +ERRY
Sbjct: 255 AFDNQCIFIVVYKPR------SSQFIVSYDKFLDAVNNKFNVGSRFTMRFEGDDFSERRY 308
Query: 350 TGVIMGVGDVDPVRWPGSKWRCLLVRWDDVES-NRHTRVSPWEIE 393
G I+GV D P W S+WR L V+WD+ S +R +VSPWEIE
Sbjct: 309 FGTIIGVSDFSP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEIE 352
Score = 44 (20.5 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 645 MDSIGQSNEHISPPLVGQPTVRGSQDLVSSCKGSCR 680
++ G S+ H+ PP++ Q G + S S R
Sbjct: 374 VNEFGSSSSHLLPPILTQGQEIGQLSVASPMNISLR 409
>TAIR|locus:2026145 [details] [associations]
symbol:ARF12 "auxin response factor 12" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 EMBL:AY669792 EMBL:AC007454
IPI:IPI00544760 PIR:C86467 RefSeq:NP_174691.2 UniGene:At.51185
ProteinModelPortal:Q9XID4 SMR:Q9XID4 IntAct:Q9XID4
EnsemblPlants:AT1G34310.1 GeneID:840331 KEGG:ath:AT1G34310
GeneFarm:3390 TAIR:At1g34310 eggNOG:NOG264447 PhylomeDB:Q9XID4
ProtClustDB:CLSN2681760 ArrayExpress:Q9XID4 Genevestigator:Q9XID4
GermOnline:AT1G34310 Uniprot:Q9XID4
Length = 593
Score = 693 (249.0 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
Identities = 157/345 (45%), Positives = 201/345 (58%)
Query: 55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXXY----DLPPHPFCRVADVK 110
+LW CAGPL +PK G V YFPQGH+E V DLP CRV +
Sbjct: 27 QLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELNELQPICDLPSKLQCRVIAIH 86
Query: 111 LHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDT 170
L E SDE YA+++L+PD Q V I +E+ + S F K LTASDT
Sbjct: 87 LKVENNSDETYAEITLMPDTT--QVV----IPTQNENQFRPLVNS-----FTKVLTASDT 135
Query: 171 STHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGW 230
S HGGF VP++ A +C P LD SQ P+QEL+A DLHG +WRF H YRG P+RHLLTTGW
Sbjct: 136 SAHGGFFVPKKHAIECLPSLDMSQPLPAQELLAIDLHGNQWRFNHNYRGTPQRHLLTTGW 195
Query: 231 SAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVT-EVVD 289
+AF KKLV+GD ++F+RGE GELR+GIRRA H + G S S + V
Sbjct: 196 NAFTTSKKLVAGDVIVFVRGETGELRVGIRRARH-QQGNIPSSIVSIDCMRHGVVASAKH 254
Query: 290 AIARKRAFSISYNPSPLCRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRY 349
A + F++ Y P +S+FI+ +KFL ++++ F VG RF MR E DD +ERR
Sbjct: 255 AFDNQCMFTVVYKPR------SSKFIVSYDKFLDAVNNKFNVGSRFTMRLEGDDFSERRC 308
Query: 350 TGVIMGVGDVDPVRWPGSKWRCLLVRWDDVES-NRHTRVSPWEIE 393
G I+GV D P W S+WR L V+WD+ S +VSPW+IE
Sbjct: 309 FGTIIGVSDFSP-HWKCSEWRSLEVQWDEFTSFPGPKKVSPWDIE 352
Score = 45 (20.9 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 645 MDSIGQSNEHISPPLVGQ 662
++ IG S+ H+ PP++ Q
Sbjct: 374 VNEIGSSSSHLLPPILTQ 391
>TAIR|locus:2206717 [details] [associations]
symbol:ARF20 "auxin response factor 20" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC069160 HOGENOM:HOG000241141
eggNOG:NOG264447 ProtClustDB:CLSN2681760 EMBL:AY669795
IPI:IPI00656906 PIR:D86473 RefSeq:NP_174758.2 UniGene:At.51187
ProteinModelPortal:Q9C7I9 SMR:Q9C7I9 IntAct:Q9C7I9 PaxDb:Q9C7I9
PRIDE:Q9C7I9 EnsemblPlants:AT1G35240.1 GeneID:840413
KEGG:ath:AT1G35240 GeneFarm:3424 TAIR:At1g35240 PhylomeDB:Q9C7I9
Genevestigator:Q9C7I9 GermOnline:AT1G35240 Uniprot:Q9C7I9
Length = 590
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 158/345 (45%), Positives = 202/345 (58%)
Query: 55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXXY----DLPPHPFCRVADVK 110
+LW CAGPL +PK G V YFPQG++E V DLP CRV +
Sbjct: 27 QLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREELNELQPICDLPSKLQCRVIAIH 86
Query: 111 LHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDT 170
L E SDE YA+++L+PD Q V I E+ + S F K LTASDT
Sbjct: 87 LKVENNSDETYAEITLMPDTT--QVV----IPTQSENQFRPLVNS-----FTKVLTASDT 135
Query: 171 STHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGW 230
S +GGF VP++ A +C PPL P+QEL+AKDLHG +WRFRH YRG P+RH LTTGW
Sbjct: 136 SAYGGFFVPKKHAIECLPPLPL----PAQELLAKDLHGNQWRFRHSYRGTPQRHSLTTGW 191
Query: 231 SAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSV-TEVVD 289
+ F KKLV GD ++F+RGE GELR+GIRRA H + G S S + V
Sbjct: 192 NEFTTSKKLVKGDVIVFVRGETGELRVGIRRARH-QQGNIPSSIVSIDCMRHGVIASAKH 250
Query: 290 AIARKRAFSISYNPSPLCRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRY 349
A+ + F + Y PS +S+FI+ +KFL ++++ F VG RF MRFE DD +ERRY
Sbjct: 251 ALDNQCIFIVVYKPS----IRSSQFIVSYDKFLDAMNNKFIVGSRFTMRFEGDDFSERRY 306
Query: 350 TGVIMGVGDVDPVRWPGSKWRCLLVRWDDVES-NRHTRVSPWEIE 393
G I+GV D P W S+WR L V+WD+ S +R +VSPWEIE
Sbjct: 307 FGTIIGVNDFSP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEIE 350
>TAIR|locus:2057517 [details] [associations]
symbol:ARF10 "auxin response factor 10" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0048829 "root cap
development" evidence=IGI;IMP] [GO:0051301 "cell division"
evidence=IGI] [GO:0009734 "auxin mediated signaling pathway"
evidence=IMP] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=IMP] [GO:0009743 "response to carbohydrate
stimulus" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0031540 "regulation of anthocyanin biosynthetic
process" evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048441 "petal development" evidence=IMP] [GO:0048442 "sepal
development" evidence=IMP] [GO:0048589 "developmental growth"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009738
GO:GO:0009734 GO:GO:0051301 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0048589 GO:GO:0009743
GO:GO:0048441 GO:GO:0048442 GO:GO:0010154 GO:GO:0035198
GO:GO:0048366 GO:GO:0007389 EMBL:AF099735 EMBL:AC006283
EMBL:AF325073 EMBL:AF336919 EMBL:EU550097 EMBL:EU550098
EMBL:EU550099 EMBL:EU550100 EMBL:EU550101 EMBL:EU550102
EMBL:EU550103 EMBL:EU550104 EMBL:EU550105 EMBL:EU550106
EMBL:EU550107 EMBL:EU550108 EMBL:EU550109 EMBL:EU550110
EMBL:EU550111 EMBL:EU550112 EMBL:EU550113 EMBL:EU550114
EMBL:EU550115 EMBL:EU550116 EMBL:EU550117 EMBL:EU550118
EMBL:EU550119 EMBL:AK228534 IPI:IPI00530405 PIR:G84683
RefSeq:NP_180402.1 UniGene:At.13730 ProteinModelPortal:Q9SKN5
SMR:Q9SKN5 IntAct:Q9SKN5 STRING:Q9SKN5 PRIDE:Q9SKN5
EnsemblPlants:AT2G28350.1 GeneID:817382 KEGG:ath:AT2G28350
GeneFarm:3383 TAIR:At2g28350 eggNOG:NOG315592 InParanoid:Q9SKN5
OMA:ERESGRC PhylomeDB:Q9SKN5 ProtClustDB:CLSN2913131
ArrayExpress:Q9SKN5 Genevestigator:Q9SKN5 GermOnline:AT2G28350
GO:GO:0031540 Uniprot:Q9SKN5
Length = 693
Score = 514 (186.0 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 113/254 (44%), Positives = 147/254 (57%)
Query: 55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVS---DFXXXXXXXYDLPPHPFCRVADVKL 111
+LWHACAG ++ +P S V YF QGH EH DF +PP CRV VK
Sbjct: 10 QLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPPDFHAPR-----VPPLILCRVVSVKF 64
Query: 112 HAEAASDEVYAQVSLVP---DEL-IEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTA 167
A+A +DEV+A+++L+P ++L +E G + + K P F KTLT
Sbjct: 65 LADAETDEVFAKITLLPLPGNDLDLENDAVLGLTPPSSDGNGNGKEK---PASFAKTLTQ 121
Query: 168 SDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLT 227
SD + GGFSVPR AE FP LDYS + P Q ++AKD+HG W+FRHIYRG PRRHLLT
Sbjct: 122 SDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWKFRHIYRGTPRRHLLT 181
Query: 228 TGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGAT------FPSFCSQQSSP 281
TGWS FVN+KKL++GD+++FLR E G+L +GIRRA G+ +P F
Sbjct: 182 TGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAKRGGLGSNAGSDNPYPGFSGFLRDD 241
Query: 282 NSVTEVVDAIARKR 295
S T + KR
Sbjct: 242 ESTTTTSKLMMMKR 255
Score = 197 (74.4 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 56/165 (33%), Positives = 82/165 (49%)
Query: 284 VTEVVDAIARK---RAFSISYNPSPLCRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFE 340
V V +A+AR +AF + Y P RAS EF + ++ + GMRFKM FE
Sbjct: 271 VEAVAEAVARAACGQAFEVVYYP----RASTPEFCVKAADVRSAMRIRWCSGMRFKMAFE 326
Query: 341 TDDAAERR-YTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVESNRHT-RVSPWEIEPSGSV 398
T+D++ + G + V DP+RWP S WR L V WD+ + ++ RVSPW +E ++
Sbjct: 327 TEDSSRISWFMGTVSAVQVADPIRWPNSPWRLLQVAWDEPDLLQNVKRVSPWLVELVSNM 386
Query: 399 CGSNNLITSGLKRTRIGLPSGKP----EFPV-PDGIGVTDFGESL 438
+ S K+ RI P P +FP+ G GES+
Sbjct: 387 PTIHLSPFSPRKKIRIPQPFEFPFHGTKFPIFSPGFANNGGGESM 431
>TAIR|locus:2008991 [details] [associations]
symbol:ARF13 "AUXIN RESPONSE FACTOR 13" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006863 "purine nucleobase transport" evidence=RCA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GO:GO:0005634 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 IPI:IPI00938986 RefSeq:NP_001154393.1
UniGene:At.51184 ProteinModelPortal:F4HT52 SMR:F4HT52 PRIDE:F4HT52
EnsemblPlants:AT1G34170.3 GeneID:840316 KEGG:ath:AT1G34170
OMA:PEFCNMA ArrayExpress:F4HT52 Uniprot:F4HT52
Length = 546
Score = 486 (176.1 bits), Expect = 6.0e-65, Sum P(3) = 6.0e-65
Identities = 109/256 (42%), Positives = 144/256 (56%)
Query: 55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVS----DFXXXXXXXYDLPPHPFCRVADVK 110
+LW+ CAGPL LPK G V YFPQGH+E + D +DLP CRV +
Sbjct: 25 KLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLRCRVVAID 84
Query: 111 LHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDT 170
+ +DEVYAQ+SL+PD E + D+ + + F K LTASD
Sbjct: 85 RKVDKNTDEVYAQISLMPD------TTEVMTHNTTMDTRRPIV-----YFFSKILTASDV 133
Query: 171 STHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTG- 229
S GG +P++ A +CFPPLD SQ +Q LVAKDL+G EW F+H++RG P+RH+ T+G
Sbjct: 134 SLSGGLIIPKQYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGG 193
Query: 230 -WSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSV-TEV 287
WS F K+L+ GD + LRGE+GELR GIRRA H + G S S + V V
Sbjct: 194 GWSVFATTKRLIVGDIFVLLRGENGELRFGIRRAKH-QQGHIPSSVISANCMQHGVIASV 252
Query: 288 VDAIARKRAFSISYNP 303
V+A K F++ Y P
Sbjct: 253 VNAFKTKCMFNVVYKP 268
Score = 156 (60.0 bits), Expect = 6.0e-65, Sum P(3) = 6.0e-65
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 329 FAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVESN-RHTRV 387
F V + +M+FE D +E+RY G I+GV D+ P W S+WR L V+WD++ R +V
Sbjct: 262 FNVVYKPRMQFEGKDFSEKRYDGTIIGVNDMSP-HWKDSEWRSLKVQWDELSPFLRPNQV 320
Query: 388 SPWEIEPSGSVCGSNNLITSGLKRTR 413
SPW+IE + S+++ S LK+ +
Sbjct: 321 SPWDIE---HLIPSSDISQSSLKKKK 343
Score = 51 (23.0 bits), Expect = 6.0e-65, Sum P(3) = 6.0e-65
Identities = 25/137 (18%), Positives = 54/137 (39%)
Query: 593 ISNYNPPYSLNDQEKEQRVNCQSFFHNSEIYGGKHASSSFLDHSFRGGDQEVMDSIGQSN 652
+SN + + ++ F + + I K S L+HS + N
Sbjct: 355 LSNLWTCQEIGQRSMNSPISVPEFSYPNAIEDSKFLSGLLLNHSL----------LAIPN 404
Query: 653 EHISPPLVGQPTVRGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVASPLNPRSSF 712
E+ + + QP +D+ + SC LFG LT+ H+ + + A + ++ +
Sbjct: 405 ENYNSDQMIQPR---KEDITTEATTSCLLFGVDLTKV-HMQGVAISRAVDLTAMHGYNQL 460
Query: 713 LSHVGQQFHPKPPVMSK 729
+ + + F K + ++
Sbjct: 461 IQKLEELFDLKDELRTR 477
>TAIR|locus:2029436 [details] [associations]
symbol:ARF17 "auxin response factor 17" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=IMP] [GO:0009734 "auxin mediated signaling pathway"
evidence=TAS] [GO:0048830 "adventitious root development"
evidence=IMP] [GO:0009555 "pollen development" evidence=IMP]
InterPro:IPR003340 InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0009555
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0048830 GO:GO:0009653
EMBL:AC009243 EMBL:AC012193 EMBL:AY056184 EMBL:BT002749
EMBL:EU550144 EMBL:EU550145 EMBL:EU550146 EMBL:EU550147
EMBL:EU550148 EMBL:EU550149 EMBL:EU550150 EMBL:EU550151
EMBL:EU550152 EMBL:EU550153 EMBL:EU550154 EMBL:EU550155
EMBL:EU550156 EMBL:EU550157 EMBL:EU550158 EMBL:EU550159
EMBL:EU550160 EMBL:EU550161 EMBL:EU550162 EMBL:EU550163
EMBL:EU550164 EMBL:EU550165 EMBL:EU550166 EMBL:EU550167
IPI:IPI00522722 PIR:D96808 RefSeq:NP_565161.1 UniGene:At.26363
ProteinModelPortal:Q84WU6 SMR:Q84WU6 IntAct:Q84WU6 STRING:Q84WU6
PRIDE:Q84WU6 EnsemblPlants:AT1G77850.1 GeneID:844120
KEGG:ath:AT1G77850 GeneFarm:3413 TAIR:At1g77850 eggNOG:NOG325741
OMA:IWRACAG PhylomeDB:Q84WU6 ProtClustDB:CLSN2689276
Genevestigator:Q84WU6 GermOnline:AT1G77850 Uniprot:Q84WU6
Length = 585
Score = 425 (154.7 bits), Expect = 1.6e-50, Sum P(3) = 1.6e-50
Identities = 94/214 (43%), Positives = 124/214 (57%)
Query: 56 LWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXXYDLPPHPFCRVADVKLHAEA 115
+W ACAG + +P S V YFPQGH+EH P P C + ++L A+
Sbjct: 20 IWRACAGASVQIPVLHSRVYYFPQGHVEHCCPLLSTLPSSTS--PVP-CIITSIQLLADP 76
Query: 116 ASDEVYAQVSLVPDELIEQKV------REGKIEDGDEDSVEVVAKSSTPHMFCKTLTASD 169
+DEV+A + L P + +Q+ R G+ DGD D K +T F K LT SD
Sbjct: 77 VTDEVFAHLILQP--MTQQQFTPTNYSRFGRF-DGDVDDNN---KVTT---FAKILTPSD 127
Query: 170 TSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTG 229
+ GGFSVPR A+ FP L++ P Q+L D+HG W FRHIYRG PRRHLLTTG
Sbjct: 128 ANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLLTTG 187
Query: 230 WSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAP 263
WS FVN KKL++GD+V+F+R E+ +G+RR P
Sbjct: 188 WSKFVNSKKLIAGDSVVFMRKSADEMFIGVRRTP 221
Score = 133 (51.9 bits), Expect = 1.6e-50, Sum P(3) = 1.6e-50
Identities = 33/127 (25%), Positives = 64/127 (50%)
Query: 270 TFPSFCSQQSSPNSVTEVVDAIARKRAFSISYNPSPLCRASASEFIIPVNKFLKSLDHSF 329
TF + + + +VT+ ++ ++ F + + P+ A SEF++ S+ +
Sbjct: 257 TFRRSGNGKLTAEAVTDAINRASQGLPFEVVFYPA----AGWSEFVVRAEDVESSMSMYW 312
Query: 330 AVGMRFKMRFETDDAAERR-YTGVIMGV-GDVDPVRWPGSKWRCLLVRWDDVESNRHT-R 386
G R KM ET+D++ + G++ + P W GS W+ L + WD+ E ++ R
Sbjct: 313 TPGTRVKMAMETEDSSRITWFQGIVSSTYQETGP--WRGSPWKQLQITWDEPEILQNVKR 370
Query: 387 VSPWEIE 393
V+PW++E
Sbjct: 371 VNPWQVE 377
Score = 47 (21.6 bits), Expect = 3.2e-40, Sum P(2) = 3.2e-40
Identities = 41/182 (22%), Positives = 64/182 (35%)
Query: 247 FLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFSISYNPSPL 306
FL G+DGE+ + PS S + P + AR+ F S+NP+
Sbjct: 404 FLSGDDGEILYPQSGLSSAAAPDPSPSMFSYSTFPAGMQG-----ARQYDFG-SFNPTGF 457
Query: 307 CRASASEFIIPVNKFLKSLDHSFAVGMRFKMRF---ETDDAAERRYTGVIMGVGDVDPVR 363
+ + N FL L V M F +D+ + T + D+ R
Sbjct: 458 IGGNPPQLF--TNNFLSPLPDLGKVSTEM-MNFGSPPSDNLSPNSNTTNLSSGNDLVGNR 514
Query: 364 WPGSKW-RCLLVRWDDVESNRHTRVSPWEIEPSGSVCGSNNLITSGLKRTRIGLPSGKPE 422
P SK + + + H+ P E SG +C + S T++ L P
Sbjct: 515 GPLSKKVNSIQLFGKIITVEEHSESGPAE---SG-LCEEDGSKESSDNETQLSLSHAPPS 570
Query: 423 FP 424
P
Sbjct: 571 VP 572
Score = 37 (18.1 bits), Expect = 1.6e-50, Sum P(3) = 1.6e-50
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 667 GSQDLVSSCKGSCRLFGFSLTEERH 691
G++ +S S +LFG +T E H
Sbjct: 512 GNRGPLSKKVNSIQLFGKIITVEEH 536
>TAIR|locus:2037169 [details] [associations]
symbol:ARF23 "auxin response factor 23" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
HOGENOM:HOG000241141 EMBL:AC022314 IPI:IPI00526589 PIR:E96503
RefSeq:NP_175062.1 UniGene:At.52022 ProteinModelPortal:Q9LP07
SMR:Q9LP07 EnsemblPlants:AT1G43950.1 GeneID:840994
KEGG:ath:AT1G43950 GeneFarm:3427 TAIR:At1g43950 OMA:PTENENQ
PhylomeDB:Q9LP07 Genevestigator:Q9LP07 GermOnline:AT1G43950
Uniprot:Q9LP07
Length = 222
Score = 441 (160.3 bits), Expect = 4.0e-41, P = 4.0e-41
Identities = 101/210 (48%), Positives = 122/210 (58%)
Query: 55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXXY----DLPPHPFCRVADVK 110
+LW CAGPL +PK G V YFPQGH+E V DLP CRV +
Sbjct: 27 QLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNCDLPSKLQCRVIAIH 86
Query: 111 LHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDT 170
L E SDE Y +++L+PD Q V I +E+ + S F K LTASDT
Sbjct: 87 LKVENNSDETYVEITLMPDTT--QVV----IPTENENQFRPIVNS-----FTKVLTASDT 135
Query: 171 STHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGW 230
S G FSVP + A +C PPLD SQ P+QEL+A DLHG +WRF+H YR PR TTGW
Sbjct: 136 SAQGEFSVPCKHAIECLPPLDMSQPIPAQELIAIDLHGNQWRFKHSYR-VPRGD--TTGW 192
Query: 231 SAFVNKKKLVSGDAVLFLRGEDGELRLGIR 260
+AF KKLV GD ++F RGE GELR+GIR
Sbjct: 193 NAFTTSKKLVVGDVIVFARGETGELRVGIR 222
>TAIR|locus:2041404 [details] [associations]
symbol:NGA1 "NGATHA1" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC004411
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 GO:GO:0048366 EMBL:AC005310 HSSP:Q9ZWM9 EMBL:AK118045
EMBL:BT008534 IPI:IPI00537675 PIR:T02200 RefSeq:NP_566089.1
UniGene:At.36441 ProteinModelPortal:O82799 SMR:O82799 IntAct:O82799
STRING:O82799 EnsemblPlants:AT2G46870.1 GeneID:819300
KEGG:ath:AT2G46870 TAIR:At2g46870 eggNOG:NOG237610
HOGENOM:HOG000239355 InParanoid:O82799 OMA:MECGESG PhylomeDB:O82799
ProtClustDB:CLSN2682823 Genevestigator:O82799 Uniprot:O82799
Length = 310
Score = 199 (75.1 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 56/151 (37%), Positives = 73/151 (48%)
Query: 145 DEDSVEVVAKSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAK 204
+E+ VA HMF K +T SD +P++ AE FP LD S L +
Sbjct: 21 EEEGAREVADRE--HMFDKVVTPSDVGKLNRLVIPKQHAERFFP-LDSSSNEKGLLLNFE 77
Query: 205 DLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR-----GEDGELRLGI 259
DL G WRFR+ Y + +++T GWS FV KKL +GD V F R G D L +
Sbjct: 78 DLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCVGDSGRDSRLFIDW 137
Query: 260 RRAP------HVKSGATFPSFCSQQSSPNSV 284
RR P H +GA FP F S S+ S+
Sbjct: 138 RRRPKVPDHPHFAAGAMFPRFYSFPSTNYSL 168
Score = 39 (18.8 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 647 SIGQSNEH---ISPPLVGQ--PTV---RGSQDLVSSCKGSCRLFGFSL 686
S+ Q N ++ PLV + P + R +Q+LV + RLFG +
Sbjct: 200 SVDQRNNPAAAVADPLVIESVPVMMHGRANQELVGTAGKRLRLFGVDM 247
>TAIR|locus:2079537 [details] [associations]
symbol:NGA2 "NGATHA2" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
EMBL:AL138642 HSSP:Q9ZWM9 HOGENOM:HOG000239355
ProtClustDB:CLSN2682823 EMBL:AK117646 EMBL:BT025866 EMBL:AY085197
IPI:IPI00523321 PIR:T47989 RefSeq:NP_191756.1 UniGene:At.34201
ProteinModelPortal:Q9M268 SMR:Q9M268 EnsemblPlants:AT3G61970.1
GeneID:825370 KEGG:ath:AT3G61970 TAIR:At3g61970 eggNOG:NOG273145
InParanoid:Q9M268 OMA:SSSMERE PhylomeDB:Q9M268
Genevestigator:Q9M268 Uniprot:Q9M268
Length = 299
Score = 178 (67.7 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 51/145 (35%), Positives = 70/145 (48%)
Query: 142 EDGDEDSVEVVAKSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQE- 200
ED ++ E + HMF K +T SD +P++ AE FP LD S S +
Sbjct: 4 EDKEKPIEEASSSMEREHMFDKVVTPSDVGKLNRLVIPKQHAERYFP-LDNSTTNDSNKG 62
Query: 201 --LVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLG 258
L +D G WRFR+ Y + +++T GWS FV KKL +GD V F R + +L
Sbjct: 63 LLLNFEDRSGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSCNKDKLY 122
Query: 259 I--RRAPHVK-------SGATFPSF 274
I RR P + +GA FP F
Sbjct: 123 IDWRRRPKIPDHHHQQFAGAMFPRF 147
>TAIR|locus:2117007 [details] [associations]
symbol:NGA4 "NGATHA4" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
EMBL:AF096370 EMBL:AL161492 HSSP:Q9ZWM9 HOGENOM:HOG000239355
EMBL:FJ873734 EMBL:BT029520 EMBL:AB493670 IPI:IPI00543194
PIR:T01944 RefSeq:NP_192059.4 UniGene:At.34418
ProteinModelPortal:O82595 SMR:O82595 STRING:O82595 PRIDE:O82595
EnsemblPlants:AT4G01500.1 GeneID:826750 KEGG:ath:AT4G01500
TAIR:At4g01500 eggNOG:NOG287578 InParanoid:O82595 OMA:YSSERRE
Genevestigator:O82595 Uniprot:O82595
Length = 333
Score = 174 (66.3 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 41/119 (34%), Positives = 63/119 (52%)
Query: 132 IEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLD 191
++Q++ E + D + + HMF K LT SD +P++ AE+ FP L+
Sbjct: 8 LDQELAEIRASSSDHTNY-FYSSERREHMFDKVLTPSDVGKLNRLVIPKQHAENFFP-LE 65
Query: 192 YSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRG 250
+Q L +D +G WRFR+ Y + +++T GWS FV +KKL +GD V F RG
Sbjct: 66 DNQN--GTVLDFQDKNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLFAGDTVSFYRG 122
>TAIR|locus:2200950 [details] [associations]
symbol:NGA3 "NGATHA3" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
HSSP:Q9ZWM9 EMBL:AC007323 eggNOG:NOG237610 HOGENOM:HOG000239355
EMBL:BX814729 IPI:IPI00536920 PIR:B86141 RefSeq:NP_171611.1
UniGene:At.49492 ProteinModelPortal:Q9MAN1 SMR:Q9MAN1 STRING:Q9MAN1
PRIDE:Q9MAN1 EnsemblPlants:AT1G01030.1 GeneID:839321
KEGG:ath:AT1G01030 TAIR:At1g01030 InParanoid:Q9MAN1 OMA:RNIVGSE
PhylomeDB:Q9MAN1 ProtClustDB:CLSN2912766 Genevestigator:Q9MAN1
Uniprot:Q9MAN1
Length = 358
Score = 172 (65.6 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 38/92 (41%), Positives = 52/92 (56%)
Query: 159 HMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYR 218
HMF K +T SD +P++ AE FP LD S + L +D +G WRFR+ Y
Sbjct: 54 HMFDKVVTPSDVGKLNRLVIPKQHAERYFP-LDSSNNQNGTLLNFQDRNGKMWRFRYSYW 112
Query: 219 GQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRG 250
+ +++T GWS FV +KKL +GD V F RG
Sbjct: 113 NSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRG 144
>TAIR|locus:2205319 [details] [associations]
symbol:RAV1 "related to ABI3/VP1 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009741 "response to
brassinosteroid stimulus" evidence=IEP] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0048366 "leaf
development" evidence=IMP] [GO:0048527 "lateral root development"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0009963 "positive regulation of
flavonoid biosynthetic process" evidence=RCA] [GO:0010363
"regulation of plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001471 InterPro:IPR003340 InterPro:IPR016177
Pfam:PF00847 Pfam:PF02362 PROSITE:PS50863 PROSITE:PS51032
SMART:SM00380 SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0045892 EMBL:AC011810 GO:GO:0009873
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0048527
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 GO:GO:0009910 GO:GO:0048366
GO:GO:0009741 EMBL:AB013886 EMBL:AY063855 EMBL:AY091291
IPI:IPI00544013 PIR:T51329 RefSeq:NP_172784.1 UniGene:At.20558
PDB:1WID PDBsum:1WID ProteinModelPortal:Q9ZWM9 SMR:Q9ZWM9
STRING:Q9ZWM9 EnsemblPlants:AT1G13260.1 GeneID:837886
KEGG:ath:AT1G13260 TAIR:At1g13260 eggNOG:NOG266118
HOGENOM:HOG000237484 InParanoid:Q9ZWM9 KO:K09287 OMA:ICETPAI
PhylomeDB:Q9ZWM9 ProtClustDB:CLSN2682511 EvolutionaryTrace:Q9ZWM9
Genevestigator:Q9ZWM9 GermOnline:AT1G13260 Uniprot:Q9ZWM9
Length = 344
Score = 162 (62.1 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 47/145 (32%), Positives = 67/145 (46%)
Query: 147 DSVEVVAKSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDL 206
D V S +F K +T SD +P+ AE FP + L +D+
Sbjct: 174 DGVSTTGFRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDV 233
Query: 207 HGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR--GEDGELRLG--IRRA 262
+G WRFR+ Y + ++LT GWS FV +K L +GD V F R G+D +L +G R
Sbjct: 234 NGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSG 293
Query: 263 PHVKSGATFPSF---CSQQSSPNSV 284
+ +G F S +SS N V
Sbjct: 294 SDLDAGRVLRLFGVNISPESSRNDV 318
>TAIR|locus:2085969 [details] [associations]
symbol:EDF3 "ethylene response DNA binding factor 3"
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009691 "cytokinin biosynthetic
process" evidence=RCA] InterPro:IPR001471 InterPro:IPR003340
InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362 PROSITE:PS50863
PROSITE:PS51032 SMART:SM00380 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009873 EMBL:AB028607
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 Gene3D:3.30.730.10
SUPFAM:SSF54171 HSSP:Q9ZWM9 eggNOG:NOG266118 HOGENOM:HOG000237484
KO:K09287 ProtClustDB:CLSN2682511 EMBL:AJ441073 EMBL:AK229415
EMBL:AY087951 IPI:IPI00523797 RefSeq:NP_189201.1 UniGene:At.37331
ProteinModelPortal:Q9LS06 SMR:Q9LS06 EnsemblPlants:AT3G25730.1
GeneID:822164 KEGG:ath:AT3G25730 TAIR:At3g25730 InParanoid:Q9LS06
OMA:NAHSKSE Genevestigator:Q9LS06 Uniprot:Q9LS06
Length = 333
Score = 157 (60.3 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 36/102 (35%), Positives = 55/102 (53%)
Query: 160 MFCKTLTASDTSTHGGFSVPRRAAEDCFP-PLDYSQQRPSQELVA-KDLHGLEWRFRHIY 217
+F KT+T SD +P+ AE FP PL + L+ +D++G WRFR+ Y
Sbjct: 182 LFEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNNNVSVKGMLLNFEDVNGKVWRFRYSY 241
Query: 218 RGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGI 259
+ ++LT GWS FV +K+L +GD + F R D + + I
Sbjct: 242 WNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNDQDQKFFI 283
>TAIR|locus:2039165 [details] [associations]
symbol:ABS2 "ABNORMAL SHOOT 2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0080167 "response to karrikin" evidence=IEP] [GO:0009062 "fatty
acid catabolic process" evidence=RCA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0080167 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC007017 EMBL:AC007135
HSSP:Q9ZWM9 HOGENOM:HOG000239355 EMBL:AK117587 EMBL:AJ441075
IPI:IPI00522172 IPI:IPI00531123 PIR:F84776 RefSeq:NP_181152.2
RefSeq:NP_850260.1 UniGene:At.23308 ProteinModelPortal:Q8GYJ2
SMR:Q8GYJ2 PaxDb:Q8GYJ2 EnsemblPlants:AT2G36080.1 GeneID:818181
KEGG:ath:AT2G36080 TAIR:At2g36080 eggNOG:NOG253490
InParanoid:Q8GYJ2 OMA:AQAVESQ PhylomeDB:Q8GYJ2
ProtClustDB:CLSN2680069 Genevestigator:Q8GYJ2 Uniprot:Q8GYJ2
Length = 244
Score = 146 (56.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 37/106 (34%), Positives = 54/106 (50%)
Query: 160 MFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVA--KDLHGLEWRFRHIY 217
+F K LT SD +P++ AE FP + + L+ +D G WRFR+ Y
Sbjct: 37 LFEKPLTPSDVGKLNRLVIPKQHAERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSY 96
Query: 218 RGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR--GEDGELRLGIRR 261
+ ++LT GWS +V +K L +GD VLF R + G +G RR
Sbjct: 97 WNSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGGRFFIGWRR 142
>TAIR|locus:2031185 [details] [associations]
symbol:TEM1 "TEMPRANILLO 1" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;NAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0009873 "ethylene mediated signaling pathway" evidence=NAS]
[GO:0048573 "photoperiodism, flowering" evidence=IMP] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0070838 "divalent
metal ion transport" evidence=RCA] InterPro:IPR001471
InterPro:IPR003340 InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362
PROSITE:PS50863 PROSITE:PS51032 SMART:SM00380 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:AC079281
GO:GO:0009873 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 GO:GO:0048573 HSSP:Q9ZWM9
HOGENOM:HOG000237484 KO:K09287 ProtClustDB:CLSN2682511
EMBL:AY091069 EMBL:AY122941 IPI:IPI00518546 PIR:A86386
RefSeq:NP_173927.1 UniGene:At.17318 ProteinModelPortal:Q9C6M5
SMR:Q9C6M5 DIP:DIP-59693N PaxDb:Q9C6M5 PRIDE:Q9C6M5
EnsemblPlants:AT1G25560.1 GeneID:839143 KEGG:ath:AT1G25560
TAIR:At1g25560 eggNOG:NOG250438 InParanoid:Q9C6M5 OMA:NDVAVEC
PhylomeDB:Q9C6M5 Genevestigator:Q9C6M5 Uniprot:Q9C6M5
Length = 361
Score = 144 (55.7 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 49/150 (32%), Positives = 71/150 (47%)
Query: 160 MFCKTLTASDTSTHGGFSVPRRAAEDCFP-PLDYSQQ--RPSQE---LV-AKDLHGLEWR 212
+F KT+T SD +P++ AE FP P + PS L+ +D G WR
Sbjct: 194 LFEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAMGMNPSPTKGVLINLEDRTGKVWR 253
Query: 213 FRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR--GEDGELRLG--IRRAPHVKSG 268
FR+ Y + ++LT GWS FV +K L +GD V F R G D +L + +R +P
Sbjct: 254 FRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFERSTGPDRQLYIHWKVRSSPVQTVV 313
Query: 269 ATFPS--FCSQQSSPNSVTEVVDAIARKRA 296
F F PN V V+ + +KR+
Sbjct: 314 RLFGVNIFNVSNEKPNDVA--VECVGKKRS 341
>TAIR|locus:2164215 [details] [associations]
symbol:DPA4 "DEVELOPMENT-RELATED PcG TARGET IN THE APEX
4" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0009062 "fatty acid catabolic
process" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=IMP] [GO:0010358 "leaf shaping" evidence=IGI] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0048366 "leaf development" evidence=IGI] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010073 EMBL:AB006700 GO:GO:0010358
HSSP:Q9ZWM9 HOGENOM:HOG000239355 IPI:IPI00517655 IPI:IPI00891280
RefSeq:NP_001119177.1 RefSeq:NP_196243.2 UniGene:At.54745
ProteinModelPortal:Q9FNI3 SMR:Q9FNI3 EnsemblPlants:AT5G06250.2
GeneID:830512 KEGG:ath:AT5G06250 TAIR:At5g06250 eggNOG:NOG256843
InParanoid:Q9FNI3 OMA:LECQMDE PhylomeDB:Q9FNI3
ProtClustDB:CLSN2702250 Genevestigator:Q9FNI3 Uniprot:Q9FNI3
Length = 282
Score = 141 (54.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 40/113 (35%), Positives = 51/113 (45%)
Query: 160 MFCKTLTASDTSTHGGFSVPRRAAEDCFP---------PLDYSQQRPSQELVAKDLHGLE 210
+F K+LT SD +P++ AE FP D S L +D G
Sbjct: 45 LFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDESGKS 104
Query: 211 WRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRL--GIRR 261
WRFR+ Y + ++LT GWS FV K+L GD V F R RL G RR
Sbjct: 105 WRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWRR 157
>TAIR|locus:2012438 [details] [associations]
symbol:RAV2 "related to ABI3/VP1 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0010167 "response to nitrate"
evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
[GO:0015706 "nitrate transport" evidence=RCA] InterPro:IPR001471
InterPro:IPR003340 InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362
PROSITE:PS50863 PROSITE:PS51032 SMART:SM00380 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892
GO:GO:0009873 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 EMBL:AC011914 EMBL:AC011665
HSSP:Q9ZWM9 eggNOG:NOG266118 HOGENOM:HOG000237484 KO:K09287
ProtClustDB:CLSN2682511 EMBL:AB013887 EMBL:AF360312 EMBL:AY056361
EMBL:AY085908 EMBL:AF003101 IPI:IPI00548727 PIR:T51330
RefSeq:NP_001185352.1 RefSeq:NP_564947.1 UniGene:At.25344
ProteinModelPortal:P82280 SMR:P82280 DIP:DIP-59694N STRING:P82280
PaxDb:P82280 PRIDE:P82280 EnsemblPlants:AT1G68840.1
EnsemblPlants:AT1G68840.2 GeneID:843216 KEGG:ath:AT1G68840
TAIR:At1g68840 InParanoid:P82280 OMA:MDSSCID PhylomeDB:P82280
Genevestigator:P82280 Uniprot:P82280
Length = 352
Score = 142 (55.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 36/101 (35%), Positives = 52/101 (51%)
Query: 160 MFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVA-KDLHGLEWRFRHIYR 218
+F K +T SD +P++ AE FP S L+ +D++G WRFR+ Y
Sbjct: 187 LFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPSPSPAVTKGVLINFEDVNGKVWRFRYSYW 246
Query: 219 GQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGI 259
+ ++LT GWS FV +K L +GD V F R E +L I
Sbjct: 247 NSSQSYVLTKGWSRFVKEKNLRAGDVVTFERSTGLERQLYI 287
>TAIR|locus:2080782 [details] [associations]
symbol:AT3G11580 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009062
"fatty acid catabolic process" evidence=RCA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC008153 HSSP:Q9ZWM9 HOGENOM:HOG000239355
EMBL:AJ441076 EMBL:AK175281 EMBL:BT029371 IPI:IPI00539345
IPI:IPI00547561 RefSeq:NP_187765.2 RefSeq:NP_850559.1
UniGene:At.39724 ProteinModelPortal:Q8RYD3 SMR:Q8RYD3
EnsemblPlants:AT3G11580.1 GeneID:820331 KEGG:ath:AT3G11580
TAIR:At3g11580 eggNOG:NOG285931 InParanoid:Q8RYD3 OMA:CHGDAVE
PhylomeDB:Q8RYD3 ProtClustDB:CLSN2918062 Genevestigator:Q8RYD3
Uniprot:Q8RYD3
Length = 267
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 45/144 (31%), Positives = 66/144 (45%)
Query: 152 VAKSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVA-------- 203
VA + +F K+LT SD +P++ AE FP + + S + VA
Sbjct: 20 VAIAQRESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATTEKGMLL 79
Query: 204 --KDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGE-D-GELRLGI 259
+D G W+FR+ Y + ++LT GWS +V K L +GD V F R D L +G
Sbjct: 80 SFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQRHRFDLHRLFIGW 139
Query: 260 RRAPHVKSGATFPSFCSQQSSPNS 283
RR S S SQ++ N+
Sbjct: 140 RRRGEASSSPAV-SVVSQEALVNT 162
>TAIR|locus:2064417 [details] [associations]
symbol:HSI2 "high-level expression of sugar-inducible
gene 2" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009737 "response to abscisic acid stimulus" evidence=TAS]
[GO:0009744 "response to sucrose stimulus" evidence=TAS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0010030 "positive regulation of seed germination"
evidence=IGI] [GO:2000034 "regulation of seed maturation"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003340 InterPro:IPR011124 Pfam:PF02362 Pfam:PF07496
PROSITE:PS50863 PROSITE:PS51050 SMART:SM01019 GO:GO:0005739
GO:GO:0009737 GO:GO:0005634 GO:GO:0045892 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0010030
GO:GO:0009744 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936 EMBL:U93215
HSSP:Q9ZWM9 EMBL:AB206553 EMBL:AY062492 IPI:IPI00532565 PIR:G84708
RefSeq:NP_850146.1 UniGene:At.27438 ProteinModelPortal:Q8W4L5
SMR:Q8W4L5 IntAct:Q8W4L5 STRING:Q8W4L5 PaxDb:Q8W4L5 PRIDE:Q8W4L5
EnsemblPlants:AT2G30470.1 GeneID:817597 KEGG:ath:AT2G30470
TAIR:At2g30470 eggNOG:NOG244543 HOGENOM:HOG000084353
InParanoid:Q8W4L5 OMA:CMNASCG PhylomeDB:Q8W4L5
ProtClustDB:CLSN2918136 Genevestigator:Q8W4L5 GO:GO:2000034
Uniprot:Q8W4L5
Length = 790
Score = 135 (52.6 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 43/133 (32%), Positives = 66/133 (49%)
Query: 160 MFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIY-- 217
+F KTL+ASD G +P+ AE FPP+ S+ P L +D+ G EW F+ Y
Sbjct: 294 LFEKTLSASDAGRIGRLVLPKACAEAYFPPISQSEGIP---LKIQDVRGREWTFQFRYWP 350
Query: 218 RGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDG-ELRLGIRRAPHV--KSGATFPSF 274
R ++L G + + L +GD V F R + G +L +G R+A + G +
Sbjct: 351 NNNSRMYVLE-GVTPCIQSMMLQAGDTVTFSRVDPGGKLIMGSRKAANAGDMQGCGLTNG 409
Query: 275 CS-QQSSPNSVTE 286
S + +S + VTE
Sbjct: 410 TSTEDTSSSGVTE 422
>TAIR|locus:2116592 [details] [associations]
symbol:HSL1 "HSI2-like 1" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;RCA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0010030 "positive regulation of seed
germination" evidence=IGI] [GO:2000034 "regulation of seed
maturation" evidence=IGI] [GO:0007062 "sister chromatid cohesion"
evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA] [GO:0009790
"embryo development" evidence=RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010162 "seed dormancy
process" evidence=RCA] [GO:0010431 "seed maturation" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045595 "regulation of cell differentiation" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0048316 "seed development" evidence=RCA]
[GO:0048366 "leaf development" evidence=RCA] [GO:0048825 "cotyledon
development" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003340 InterPro:IPR011124 Pfam:PF02362 Pfam:PF07496
PROSITE:PS50863 PROSITE:PS51050 SMART:SM01019 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0010030 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
EMBL:AL021636 EMBL:AL161580 HSSP:Q9ZWM9 eggNOG:NOG244543
HOGENOM:HOG000084353 GO:GO:2000034 EMBL:AB206554 EMBL:AK228013
IPI:IPI00541402 IPI:IPI00931064 PIR:T04644 RefSeq:NP_194929.2
UniGene:At.1885 ProteinModelPortal:Q5CCK4 SMR:Q5CCK4 STRING:Q5CCK4
PaxDb:Q5CCK4 PRIDE:Q5CCK4 EnsemblPlants:AT4G32010.1 GeneID:829332
KEGG:ath:AT4G32010 TAIR:At4g32010 InParanoid:Q5CCK4 OMA:MNALCGA
PhylomeDB:Q5CCK4 ProtClustDB:CLSN2918602 Genevestigator:Q5CCK4
Uniprot:Q5CCK4
Length = 780
Score = 130 (50.8 bits), Expect = 0.00012, P = 0.00012
Identities = 42/126 (33%), Positives = 62/126 (49%)
Query: 160 MFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEW--RFRHIY 217
+F K L+ASD G +P+ AE FPP+ + P L +D+ G EW +FR
Sbjct: 285 LFEKVLSASDAGRIGRLVLPKACAEAYFPPISLPEGLP---LKIQDIKGKEWVFQFRFWP 341
Query: 218 RGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGE-DGELRLGIRRAPHVKSGATFPSFCS 276
R ++L G + + +L +GD V F R E +G+L +G R+A + S AT
Sbjct: 342 NNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRTEPEGKLVMGYRKATN--STAT--QMFK 396
Query: 277 QQSSPN 282
S PN
Sbjct: 397 GSSEPN 402
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.413 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 753 696 0.00081 121 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 34
No. of states in DFA: 624 (66 KB)
Total size of DFA: 380 KB (2186 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 57.72u 0.10s 57.82t Elapsed: 00:00:03
Total cpu time: 57.73u 0.10s 57.83t Elapsed: 00:00:03
Start: Tue May 21 15:40:16 2013 End: Tue May 21 15:40:19 2013