Query 004436
Match_columns 753
No_of_seqs 311 out of 546
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 01:10:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 3E-28 1E-32 229.0 14.5 112 156-267 9-122 (130)
2 4i1k_A B3 domain-containing tr 99.7 2.6E-17 8.8E-22 157.8 12.1 98 157-264 45-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.5 2.8E-14 9.5E-19 128.6 10.7 93 159-262 9-101 (104)
4 1na6_A Ecorii, restriction end 92.9 0.17 5.9E-06 55.5 7.4 92 158-250 18-123 (404)
5 3cgm_A SLYD, peptidyl-prolyl C 72.0 15 0.00052 35.1 9.0 104 239-358 3-110 (158)
6 2k8i_A SLYD, peptidyl-prolyl C 64.7 33 0.0011 33.2 9.8 107 239-358 3-114 (171)
7 2kfw_A FKBP-type peptidyl-prol 60.2 20 0.00067 35.6 7.4 108 238-358 2-114 (196)
8 2kr7_A FKBP-type peptidyl-prol 53.0 59 0.002 30.5 9.2 110 236-358 4-119 (151)
9 4dt4_A FKBP-type 16 kDa peptid 46.4 69 0.0023 31.0 8.6 110 238-358 24-138 (169)
10 3o27_A Putative uncharacterize 45.1 18 0.00062 30.5 3.6 36 231-266 31-67 (68)
11 3p8d_A Medulloblastoma antigen 42.7 36 0.0012 28.6 5.1 55 325-396 3-57 (67)
12 3qii_A PHD finger protein 20; 34.2 53 0.0018 28.8 5.0 54 326-396 19-72 (85)
13 2e63_A KIAA1787 protein; struc 25.1 42 0.0014 32.6 3.1 24 237-260 116-139 (170)
14 2jng_A Cullin-7, CUL-7; P53 bi 25.0 57 0.002 29.7 3.7 71 317-399 10-80 (105)
15 3m7a_A Uncharacterized protein 24.9 59 0.002 30.7 4.0 47 198-247 83-140 (140)
16 3pr9_A FKBP-type peptidyl-prol 24.3 2.5E+02 0.0086 26.6 8.4 68 281-358 54-123 (157)
17 4a4f_A SurviVal of motor neuro 22.8 79 0.0027 25.6 3.9 42 325-378 5-46 (64)
18 1mhn_A SurviVal motor neuron p 22.4 80 0.0027 25.0 3.8 40 327-378 2-41 (59)
19 2equ_A PHD finger protein 20-l 22.2 81 0.0028 26.7 4.0 40 326-379 7-46 (74)
20 3s6w_A Tudor domain-containing 20.4 84 0.0029 24.4 3.5 39 328-378 1-39 (54)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=3e-28 Score=228.96 Aligned_cols=112 Identities=31% Similarity=0.505 Sum_probs=103.3
Q ss_pred CcceeEEEecccccCCCCCceeeeccchhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccchhhhhh
Q 004436 156 STPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVN 235 (753)
Q Consensus 156 ~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FPpLd~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~prrhlLTtGWs~FV~ 235 (753)
+..++|+|+||+|||+++++|+||+++|+.|||+++..+..+.++|.++|.+|++|+|||+||+++++|+|++||+.||+
T Consensus 9 ~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV~ 88 (130)
T 1wid_A 9 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVK 88 (130)
T ss_dssp CCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHH
T ss_pred CCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHHH
Confidence 44579999999999999999999999999999999887667889999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEEEcCC--CcEEEEEEEccCCCC
Q 004436 236 KKKLVSGDAVLFLRGED--GELRLGIRRAPHVKS 267 (753)
Q Consensus 236 ~K~L~aGD~VvF~R~~~--G~l~vGIRRa~~~~~ 267 (753)
+|+|++||+|+|++.++ +.|+|++||+.....
T Consensus 89 ~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~~ 122 (130)
T 1wid_A 89 EKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDL 122 (130)
T ss_dssp HTTCCTTCEEEEEECCSSSCCEEEEEECCCSCSS
T ss_pred HcCCCCCCEEEEEEecCCCcEEEEEEEECCCCCc
Confidence 99999999999999764 579999999986553
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.72 E-value=2.6e-17 Score=157.78 Aligned_cols=98 Identities=20% Similarity=0.280 Sum_probs=86.2
Q ss_pred cceeEEEecccccCCCCCceeeeccchhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccchhhhhhc
Q 004436 157 TPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNK 236 (753)
Q Consensus 157 ~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FPpLd~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~prrhlLTtGWs~FV~~ 236 (753)
.-++|.|+||+||+.+...|.||+++++.+||..+ ..+.+.|. |+.|.|+|+|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHH
Confidence 34699999999999887789999999999999753 47888888 6999999999974 68999999999999
Q ss_pred CCCCCCCEEEEEEcCCC--cEEEEEEEccC
Q 004436 237 KKLVSGDAVLFLRGEDG--ELRLGIRRAPH 264 (753)
Q Consensus 237 K~L~aGD~VvF~R~~~G--~l~vGIRRa~~ 264 (753)
++|++||.|+|...++. .|.|.|.|+..
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred cCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 99999999999997765 69999999864
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.53 E-value=2.8e-14 Score=128.62 Aligned_cols=93 Identities=24% Similarity=0.400 Sum_probs=81.8
Q ss_pred eeEEEecccccCCCCCceeeeccchhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccchhhhhhcCC
Q 004436 159 HMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKK 238 (753)
Q Consensus 159 ~~F~K~LT~SDv~~~grfsVPk~~Ae~~FPpLd~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~prrhlLTtGWs~FV~~K~ 238 (753)
+.|.|+|+++|. ..+|.||+++++.+.+.+. ..+.++|..|++|++++.++. ++..|+.||.+||++++
T Consensus 9 p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~~ 77 (104)
T 1yel_A 9 VQFMKPFISEKS--SKSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDNN 77 (104)
T ss_dssp EEEEEECCHHHH--TTCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHHT
T ss_pred CCEEEEECCCCc--cceEECCHHHHHhcCccCC-------CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHcC
Confidence 589999999994 4599999999988665432 378899999999999999874 57899999999999999
Q ss_pred CCCCCEEEEEEcCCCcEEEEEEEc
Q 004436 239 LVSGDAVLFLRGEDGELRLGIRRA 262 (753)
Q Consensus 239 L~aGD~VvF~R~~~G~l~vGIRRa 262 (753)
|++||.|+|...++..+.|-|-|.
T Consensus 78 L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 78 LEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp CCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCEEEEEEcCCCeEEEEEECC
Confidence 999999999999999999999875
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=92.88 E-value=0.17 Score=55.49 Aligned_cols=92 Identities=23% Similarity=0.317 Sum_probs=66.2
Q ss_pred ceeEEEecccccCCCC----CceeeeccchhhcCCCCCC-CCCCCceEEEEE--eCCCCeEEEEEEEeC------CCCce
Q 004436 158 PHMFCKTLTASDTSTH----GGFSVPRRAAEDCFPPLDY-SQQRPSQELVAK--DLHGLEWRFRHIYRG------QPRRH 224 (753)
Q Consensus 158 ~~~F~K~LT~SDv~~~----grfsVPk~~Ae~~FPpLd~-~~~~p~q~L~~~--D~~G~~W~Fr~~yrg------~prrh 224 (753)
-+.|+|.|++-|++.. ++|.+|+..+..+||.|+. .+..+.+.+.+. |...-++.++.+|.+ +...|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 4699999999999865 4899999889999999883 344566666544 443455599999996 34457
Q ss_pred eeccchh-hhhhcCCCCCCCEEEEEEc
Q 004436 225 LLTTGWS-AFVNKKKLVSGDAVLFLRG 250 (753)
Q Consensus 225 lLTtGWs-~FV~~K~L~aGD~VvF~R~ 250 (753)
.||. |- .+.-.+...+||.++|-+.
T Consensus 98 RLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEee-cCCCCcccccCCCCCEEEEEEe
Confidence 7763 22 2444577789999888744
No 5
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=72.03 E-value=15 Score=35.10 Aligned_cols=104 Identities=11% Similarity=0.120 Sum_probs=65.1
Q ss_pred CCCCCEEEEE-Ec-CCCcEEEEEEEccCCCCCCCCCccccCCCCCcchHHHHHHhhcCCeEEEEecCCCC--CCCCCcce
Q 004436 239 LVSGDAVLFL-RG-EDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFSISYNPSPL--CRASASEF 314 (753)
Q Consensus 239 L~aGD~VvF~-R~-~~G~l~vGIRRa~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~~~~F~V~Y~P~~~--~r~~~~EF 314 (753)
.+.||.|.+. .. .+|+.+-.-+ . .+.. .... -...+.+|+.-...|..++|.--|.-. .|....-+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~--~------~f~~-G~g~-vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE--L------SYLH-GHRN-LIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE--E------EEET-TSSS-SCHHHHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE--E------EEEE-CCCC-cChHHHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 5688988773 22 6777654433 1 1111 1111 134577787778888888888755110 03234558
Q ss_pred eeehhhHhhhccCCcccCcEEEEEeecCCccceeeeeEEEeecc
Q 004436 315 IIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGD 358 (753)
Q Consensus 315 vVp~~~y~~s~~~~w~~GmRfkM~fe~eDs~e~r~~GtI~gv~~ 358 (753)
.|++..|... ..|.+||+|.+. +++. +...|+|+.|.+
T Consensus 73 ~v~~~~f~~~--~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED--AEVVPGAQFYAQ--DMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT--SCCCTTCEEEEE--ETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC--CCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 8999988643 579999999854 5554 467899999865
No 6
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=64.66 E-value=33 Score=33.22 Aligned_cols=107 Identities=20% Similarity=0.205 Sum_probs=65.4
Q ss_pred CCCCCEEEE-EE--cCCCcEEEEEEEccCCCCCCCCCccccCCCCCcchHHHHHHhhcCCeEEEEecCCCC--CCCCCcc
Q 004436 239 LVSGDAVLF-LR--GEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFSISYNPSPL--CRASASE 313 (753)
Q Consensus 239 L~aGD~VvF-~R--~~~G~l~vGIRRa~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~~~~F~V~Y~P~~~--~r~~~~E 313 (753)
.+.||.|.+ |. ..+|+.+-.-+.. .|.........-...+.+|+.-...|..++|..-|.-. .|..-.-
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~v 76 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENLV 76 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCCTTSE
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCChhhE
Confidence 578899877 33 3477765433210 12222111122245678888888888888887665110 0222345
Q ss_pred eeeehhhHhhhccCCcccCcEEEEEeecCCccceeeeeEEEeecc
Q 004436 314 FIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGD 358 (753)
Q Consensus 314 FvVp~~~y~~s~~~~w~~GmRfkM~fe~eDs~e~r~~GtI~gv~~ 358 (753)
+.||+..|.. ...+.+||+|.+ ++++. . ..|+|+.|.+
T Consensus 77 ~~v~~~~f~~--~~~~~~G~~~~~--~~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 77 QRVPKDVFMG--VDELQVGMRFLA--ETDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEGGGGTT--SSCCCTTCEEEE--EETTE--E-EEEEEEEECS
T ss_pred EEeeHHHCCc--ccCccCCcEEEE--ECCCC--c-EEEEEEEEcC
Confidence 7899999864 247899999985 45565 2 6899998865
No 7
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=60.22 E-value=20 Score=35.64 Aligned_cols=108 Identities=20% Similarity=0.208 Sum_probs=64.9
Q ss_pred CCCCCCEEEE-EE--cCCCcEEEEEEEccCCCCCCCCCccccCCCCCcchHHHHHHhhcCCeEEEEecCCCC--CCCCCc
Q 004436 238 KLVSGDAVLF-LR--GEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFSISYNPSPL--CRASAS 312 (753)
Q Consensus 238 ~L~aGD~VvF-~R--~~~G~l~vGIRRa~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~~~~F~V~Y~P~~~--~r~~~~ 312 (753)
..+.||.|.+ |. ..+|+++-.-+.. .|.........-...+.+|+.-+..|..++|..-|.-. .|....
T Consensus 2 ~i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 2 KVAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCCSSCEEEEEEEEEETTTEEEEECCTT------SCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCCEEEEEEEEEECCCCEEEecCCC------CCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 3678999887 33 3577755432110 12222211122244577777777889889888765210 022334
Q ss_pred ceeeehhhHhhhccCCcccCcEEEEEeecCCccceeeeeEEEeecc
Q 004436 313 EFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGD 358 (753)
Q Consensus 313 EFvVp~~~y~~s~~~~w~~GmRfkM~fe~eDs~e~r~~GtI~gv~~ 358 (753)
-+.||+..|.. ...+.+||+|. +++++. .+.++|+.|.+
T Consensus 76 V~~vp~~~f~~--~~~~~~G~~~~--~~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMG--VDELQVGMRFL--AETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCC--SSCCCTTCEEE--EEETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCC--ccCcccCCEEE--EECCCC---cEEEEEEEEcC
Confidence 57889988853 24689999996 455554 56888888865
No 8
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=53.03 E-value=59 Score=30.55 Aligned_cols=110 Identities=11% Similarity=0.043 Sum_probs=66.7
Q ss_pred cCCCCCCCEEEEE-E--cC-CCcEEEEEEEccCCCCCCCCCccccCCCCCcchHHHHHHhhcCCeEEEEecCCCC--CCC
Q 004436 236 KKKLVSGDAVLFL-R--GE-DGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFSISYNPSPL--CRA 309 (753)
Q Consensus 236 ~K~L~aGD~VvF~-R--~~-~G~l~vGIRRa~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~~~~F~V~Y~P~~~--~r~ 309 (753)
.+..+.||.|.+. . .. +|+.+-.-+. ..|.........-...+.+|+.-...|..++|.--|.-. .|.
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~------~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~ 77 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNIS------KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE 77 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTT------TCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCC------CcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC
Confidence 3557789999874 3 34 7775543211 012221111112244577777777888888887655110 033
Q ss_pred CCcceeeehhhHhhhccCCcccCcEEEEEeecCCccceeeeeEEEeecc
Q 004436 310 SASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGD 358 (753)
Q Consensus 310 ~~~EFvVp~~~y~~s~~~~w~~GmRfkM~fe~eDs~e~r~~GtI~gv~~ 358 (753)
...-+.||+..| . ...+.+||+|.+ .+++. .+..|+|+.|.+
T Consensus 78 ~~~v~~v~~~~f-~--~~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 78 SSYLQEVPRDQF-E--GIELEKGMSVFG--QTEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp SCEEEEEEGGGG-T--TSCCCTTCEEEE--EETTT--EEEEEEEEEECS
T ss_pred cceEEEEcHHHc-C--CCCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 345578899988 2 357999999975 45555 467899999865
No 9
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=46.42 E-value=69 Score=31.03 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=66.5
Q ss_pred CCCCCCEEEE-EE--cCCCcEEEEEEEccCCCCCCCCCccccCCCCCcchHHHHHHhhcCCeEEEEecCCCC--CCCCCc
Q 004436 238 KLVSGDAVLF-LR--GEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFSISYNPSPL--CRASAS 312 (753)
Q Consensus 238 ~L~aGD~VvF-~R--~~~G~l~vGIRRa~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~~~~F~V~Y~P~~~--~r~~~~ 312 (753)
..+.||.|.+ |+ ..+|+++-.-+.. +.|....-....-...+.+|+.-...|..++|..-|.-. .|....
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~-----~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~l 98 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNN-----GKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDL 98 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHH-----TSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCCGGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCC-----CCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCChHH
Confidence 5788999988 34 3578765432110 112221111122245678888888889999998765100 022223
Q ss_pred ceeeehhhHhhhccCCcccCcEEEEEeecCCccceeeeeEEEeecc
Q 004436 313 EFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGD 358 (753)
Q Consensus 313 EFvVp~~~y~~s~~~~w~~GmRfkM~fe~eDs~e~r~~GtI~gv~~ 358 (753)
=+.||++.|... ..+.+||+|.+ ++++. ..+.|+|+.|.+
T Consensus 99 v~~vp~~~f~~~--~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 99 IQYFSRREFMDA--GEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp EEEEEGGGGTTT--CCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred EEEeCHHHCCCc--CCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 367888888643 45889999875 45554 367899999865
No 10
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=45.09 E-value=18 Score=30.49 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=30.9
Q ss_pred hhhhhcCCCCCCCEEEEEEc-CCCcEEEEEEEccCCC
Q 004436 231 SAFVNKKKLVSGDAVLFLRG-EDGELRLGIRRAPHVK 266 (753)
Q Consensus 231 s~FV~~K~L~aGD~VvF~R~-~~G~l~vGIRRa~~~~ 266 (753)
.++++.-+|+.||.+...-+ .+|++.++.+|-++.+
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk~k 67 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKELK 67 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGGGC
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhhcc
Confidence 48999999999999999875 5899999999976543
No 11
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=42.72 E-value=36 Score=28.56 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=38.0
Q ss_pred ccCCcccCcEEEEEeecCCccceeeeeEEEeeccCCCCCCCCCCceeEEEEecCCCCCCCCcccccccccCC
Q 004436 325 LDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVESNRHTRVSPWEIEPSG 396 (753)
Q Consensus 325 ~~~~w~~GmRfkM~fe~eDs~e~r~~GtI~gv~~~dp~~wp~S~WR~L~V~WDe~~~~~~~RVSPWeIEpv~ 396 (753)
|...|.+|+++--+| .|. ++|-++|+.|... ....|..++... +.|..=+|-|+.
T Consensus 3 ~~~~~~vGd~vmArW--~D~--~yYpA~I~si~~~----------~~Y~V~F~dG~~---etvk~~~ikp~~ 57 (67)
T 3p8d_A 3 MSSEFQINEQVLACW--SDC--RFYPAKVTAVNKD----------GTYTVKFYDGVV---QTVKHIHVKAFS 57 (67)
T ss_dssp --CCCCTTCEEEEEC--TTS--CEEEEEEEEECTT----------SEEEEEETTSCE---EEEEGGGEEECC
T ss_pred cCcccccCCEEEEEc--CCC--CEeeEEEEEECCC----------CeEEEEEeCCce---EEEeHHHcccCC
Confidence 455899999999999 343 5999999999874 348899999333 334444444433
No 12
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=34.23 E-value=53 Score=28.84 Aligned_cols=54 Identities=15% Similarity=0.205 Sum_probs=38.2
Q ss_pred cCCcccCcEEEEEeecCCccceeeeeEEEeeccCCCCCCCCCCceeEEEEecCCCCCCCCcccccccccCC
Q 004436 326 DHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVESNRHTRVSPWEIEPSG 396 (753)
Q Consensus 326 ~~~w~~GmRfkM~fe~eDs~e~r~~GtI~gv~~~dp~~wp~S~WR~L~V~WDe~~~~~~~RVSPWeIEpv~ 396 (753)
...|.+|+++--+| .|. ++|-++|++|... ..+.|.+++... +.|.+=+|.|+.
T Consensus 19 ~~~f~vGd~VlArW--~D~--~yYPAkI~sV~~~----------~~YtV~F~DG~~---etvk~~~IKp~~ 72 (85)
T 3qii_A 19 SSEFQINEQVLACW--SDC--RFYPAKVTAVNKD----------GTYTVKFYDGVV---QTVKHIHVKAFS 72 (85)
T ss_dssp --CCCTTCEEEEEC--TTS--CEEEEEEEEECTT----------SEEEEEETTSCE---EEEEGGGEEECC
T ss_pred CcccccCCEEEEEe--CCC--CEeeEEEEEECCC----------CeEEEEEeCCCe---EEecHHHcccCC
Confidence 45799999999999 343 5999999999874 358899999333 334444554444
No 13
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.08 E-value=42 Score=32.60 Aligned_cols=24 Identities=42% Similarity=0.468 Sum_probs=21.4
Q ss_pred CCCCCCCEEEEEEcCCCcEEEEEE
Q 004436 237 KKLVSGDAVLFLRGEDGELRLGIR 260 (753)
Q Consensus 237 K~L~aGD~VvF~R~~~G~l~vGIR 260 (753)
..|++||.|-|++..+|+|.+.|-
T Consensus 116 ~~l~~Gd~ig~~~~~~G~l~~~iN 139 (170)
T 2e63_A 116 DQLGEGDRVGVERTVAGELRLWVN 139 (170)
T ss_dssp GGCCSSCCEEEEECTTSCEEEEES
T ss_pred cccCCCCEEEEEEcCCcEEEEEEC
Confidence 457899999999999999999973
No 14
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=24.99 E-value=57 Score=29.69 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=44.0
Q ss_pred ehhhHhhhccCCcccCcEEEEEeecCCccceeeeeEEEeeccCCCCCCCCCCceeEEEEecCCCCCCCCcccccccccCC
Q 004436 317 PVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVESNRHTRVSPWEIEPSG 396 (753)
Q Consensus 317 p~~~y~~s~~~~w~~GmRfkM~fe~eDs~e~r~~GtI~gv~~~dp~~wp~S~WR~L~V~WDe~~~~~~~RVSPWeIEpv~ 396 (753)
..+.|-.=+..+..||||+||.=.-|+-+. -=.|.+. ++ .+- - + ..+|.|...... -.|.-=.||+++
T Consensus 10 s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s-~~G--l---~--~vQv~W~~~G~T--yWV~~~~~Ellg 77 (105)
T 2jng_A 10 SGNTYALYVRDTLQPGMRVRMLDDYEEISA-GDEGEFR-QS-NNG--V---P--PVQVFWESTGRT--YWVHWHMLEILG 77 (105)
T ss_dssp SSHHHHHHHHHHCCTTCEEEECSCBTTBCT-TCEEEEE-EE-CTT--S---S--EEEEEETTTTEE--EEEEGGGEEECC
T ss_pred cchhHHHHHHhcCCCccEEeeehhhhhhcc-CCceeEE-ec-CCC--C---c--cceeeehhcCce--EEEEeehhhhcC
Confidence 345677778889999999999744443322 1256666 32 222 2 2 899999974321 246666777776
Q ss_pred CCC
Q 004436 397 SVC 399 (753)
Q Consensus 397 ~~~ 399 (753)
...
T Consensus 78 ~~~ 80 (105)
T 2jng_A 78 FEE 80 (105)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 15
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=24.89 E-value=59 Score=30.75 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=33.2
Q ss_pred ceEEEEEeCCCCeEEEEEEEe---------CCCCceee--ccchhhhhhcCCCCCCCEEEE
Q 004436 198 SQELVAKDLHGLEWRFRHIYR---------GQPRRHLL--TTGWSAFVNKKKLVSGDAVLF 247 (753)
Q Consensus 198 ~q~L~~~D~~G~~W~Fr~~yr---------g~prrhlL--TtGWs~FV~~K~L~aGD~VvF 247 (753)
..++++.|..|++=....--. ..+-+|+| ..|| +.+.++++||.|.|
T Consensus 83 PLDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~---~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 83 PLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGL---AARLGIKPGDKVEW 140 (140)
T ss_dssp CEEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTH---HHHHTCCTTCEEEC
T ss_pred ceEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcCh---HHHcCCCCCCEEeC
Confidence 357788888888776654211 12346887 6887 68889999999875
No 16
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=24.27 E-value=2.5e+02 Score=26.58 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=45.6
Q ss_pred CcchHHHHHHhhcCCeEEEEecCCCC--CCCCCcceeeehhhHhhhccCCcccCcEEEEEeecCCccceeeeeEEEeecc
Q 004436 281 PNSVTEVVDAIARKRAFSISYNPSPL--CRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGD 358 (753)
Q Consensus 281 ~~~l~~a~~a~~~~~~F~V~Y~P~~~--~r~~~~EFvVp~~~y~~s~~~~w~~GmRfkM~fe~eDs~e~r~~GtI~gv~~ 358 (753)
..-+.+|+.-...|..++|+--|.-. .|....=..||+..|.+. .....+||+|.+ +++ .|+|+.|.+
T Consensus 54 i~G~eeaL~gm~~Ge~~~v~Ipp~~aYG~~~~~~V~~v~~~~f~~~-~~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 54 LPGLDEAILEMDVGEEREVVLPPEKAFGKRDPSKIKLIPLSEFTKR-GIKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp CHHHHHHHHHCCTTCEEEEEECGGGTTCCCCGGGEEEEEHHHHHHT-TCCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred HHHHHHHHcCCCCCCEEEEEECcHHhcCCCChHhEEEcCHHHCCcc-cCCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 45688888888999999998655100 022223367899998753 345788999975 221 588988865
No 17
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=22.84 E-value=79 Score=25.57 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=31.8
Q ss_pred ccCCcccCcEEEEEeecCCccceeeeeEEEeeccCCCCCCCCCCceeEEEEecC
Q 004436 325 LDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPVRWPGSKWRCLLVRWDD 378 (753)
Q Consensus 325 ~~~~w~~GmRfkM~fe~eDs~e~r~~GtI~gv~~~dp~~wp~S~WR~L~V~WDe 378 (753)
....|.+|+.+.-+|. +|. .||-++|.++...+ ....|...+
T Consensus 5 ~~~~~~vGd~c~A~~s-~Dg--~wYrA~I~~v~~~~---------~~~~V~fvd 46 (64)
T 4a4f_A 5 PTHSWKVGDKCMAVWS-EDG--QCYEAEIEEIDEEN---------GTAAITFAG 46 (64)
T ss_dssp CSSCCCTTCEEEEECT-TTS--SEEEEEEEEEETTT---------TEEEEEETT
T ss_pred cCCCCCCCCEEEEEEC-CCC--CEEEEEEEEEcCCC---------CEEEEEEEe
Confidence 4568999999999994 343 59999999998532 246787777
No 18
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=22.39 E-value=80 Score=25.04 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=29.6
Q ss_pred CCcccCcEEEEEeecCCccceeeeeEEEeeccCCCCCCCCCCceeEEEEecC
Q 004436 327 HSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPVRWPGSKWRCLLVRWDD 378 (753)
Q Consensus 327 ~~w~~GmRfkM~fe~eDs~e~r~~GtI~gv~~~dp~~wp~S~WR~L~V~WDe 378 (753)
+.|.+|+.+..+|. +|. .||-++|..+...+ ....|.-.+
T Consensus 2 ~~~~~G~~c~A~~s-~Dg--~wYrA~I~~i~~~~---------~~~~V~f~D 41 (59)
T 1mhn_A 2 QQWKVGDKCSAIWS-EDG--CIYPATIASIDFKR---------ETCVVVYTG 41 (59)
T ss_dssp CCCCTTCEEEEECT-TTS--CEEEEEEEEEETTT---------TEEEEEETT
T ss_pred CcCCcCCEEEEEEC-CCC--CEEEEEEEEEcCCC---------CEEEEEEEc
Confidence 46999999999994 343 59999999996422 245677766
No 19
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.18 E-value=81 Score=26.71 Aligned_cols=40 Identities=23% Similarity=0.363 Sum_probs=31.7
Q ss_pred cCCcccCcEEEEEeecCCccceeeeeEEEeeccCCCCCCCCCCceeEEEEecCC
Q 004436 326 DHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPVRWPGSKWRCLLVRWDDV 379 (753)
Q Consensus 326 ~~~w~~GmRfkM~fe~eDs~e~r~~GtI~gv~~~dp~~wp~S~WR~L~V~WDe~ 379 (753)
...|.+|+++.-+|. |. .||-++|..|.+. ....|..++-
T Consensus 7 ~~~~kvGd~clA~ws--Dg--~~Y~A~I~~v~~~----------~~~~V~f~Dy 46 (74)
T 2equ_A 7 GFDFKAGEEVLARWT--DC--RYYPAKIEAINKE----------GTFTVQFYDG 46 (74)
T ss_dssp CCCCCTTCEEEEECS--SS--SEEEEEEEEESTT----------SSEEEEETTS
T ss_pred CCCCCCCCEEEEECC--CC--CEEEEEEEEECCC----------CEEEEEEecC
Confidence 457999999999997 54 5999999999642 2467888874
No 20
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=20.42 E-value=84 Score=24.36 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=27.4
Q ss_pred CcccCcEEEEEeecCCccceeeeeEEEeeccCCCCCCCCCCceeEEEEecC
Q 004436 328 SFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPVRWPGSKWRCLLVRWDD 378 (753)
Q Consensus 328 ~w~~GmRfkM~fe~eDs~e~r~~GtI~gv~~~dp~~wp~S~WR~L~V~WDe 378 (753)
.|.+|+...-+|.. |. .||-++|.++...+ ....|...+
T Consensus 1 ~wk~G~~c~A~~s~-Dg--~wYrA~I~~i~~~~---------~~~~V~fvD 39 (54)
T 3s6w_A 1 MWKPGDECFALYWE-DN--KFYRAEVEALHSSG---------MTAVVKFID 39 (54)
T ss_dssp CCCTTCEEEEEETT-TT--EEEEEEEEEC--CC---------SEEEEEETT
T ss_pred CCCCCCEEEEEECC-CC--CEEEEEEEEEeCCC---------CEEEEEEEc
Confidence 49999999999943 43 59999999986432 235576666
Done!