BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004437
(753 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 541 bits (1395), Expect = e-154, Method: Compositional matrix adjust.
Identities = 348/765 (45%), Positives = 470/765 (61%), Gaps = 63/765 (8%)
Query: 8 AWSWTVEQCLKEYNVKLDKGLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVK 67
A S T E+CL + V GL+ +V++ E+YG NEL E+GK LW+LVLEQF+D LV+
Sbjct: 4 AHSKTTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVLEQFEDLLVR 63
Query: 68 ILLVAAFISFILAYFHSSDSGDSGFEDYXXXXXXXXXXXXXXXXXXWQESNAEKALEALK 127
ILL+AA ISF+LA+F + G+ + WQE NAE A+EALK
Sbjct: 64 ILLLAACISFVLAWF---EEGEETVTAFVEPFVILLILIANAIVGVWQERNAENAIEALK 120
Query: 128 KIQCESGKVLR-DGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSL 186
+ + E GKV R D V + A +VPGDIVE+ VGDKVPAD+R+ +K+++LRV+QS L
Sbjct: 121 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSIL 180
Query: 187 TGEAMPILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIH 246
TGE++ ++K T PV Q K+NM+F+GT + G + IV TG+ TEIGKI+ Q+
Sbjct: 181 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQM- 239
Query: 247 DASLEESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDG--WPANVQFSF 304
A+ E+ TPL++KLDEFG +L+ I L+C+ VW++N +F D V G W
Sbjct: 240 -AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHF--NDPVHGGSW-------I 289
Query: 305 EKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVIC 364
YYFKIAVALAVAAIPEGLPAVITTCLALGTR+MA+KNAIVR LPSVETLGCT+VIC
Sbjct: 290 RGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVIC 349
Query: 365 SDKTGTLTTNQMSVTEFFTLGR---KTTISRIFHVEGTTYDPKDGGIV--DWPCYNMDAN 419
SDKTGTLTTNQMSV + F + R + F V G+TY P +G ++ D P + +
Sbjct: 350 SDKTGTLTTNQMSVCKMFIIDRIDGDLCLLNEFSVTGSTYAP-EGEVLKNDKPVRSGQYD 408
Query: 420 -LQAMAKICAVCNDAGVYCDGP--LFRATGLPTEAALKVLVEKMGFPDVKGRNKISDTQL 476
L +A ICA+CND+ + + ++ G TE AL LVEKM + + RN +S +
Sbjct: 409 GLVELATICALCNDSSLDFNETKGIYEKVGEATETALTTLVEKMNVFNTEVRN-LSKVER 467
Query: 477 AANYLIDSSTVRLGCCEWWTKRSKRVATLEFDRIRKSMSVIV-----REPTGHNQLLVKG 531
A C + K+ TLEF R RKSMSV R G N++ VKG
Sbjct: 468 AN-----------ACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVG-NKMFVKG 515
Query: 532 SVESLLERSSHVQLADGSVVPLDEPCWQLMLSRHLEMSS--KGLRCLGMAYKDELGEFSD 589
+ E +++R ++V++ + VP+ P + +LS E + LRCL +A +D
Sbjct: 516 APEGVIDRCNYVRVGT-TRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRD------- 567
Query: 590 YYSESHPAHKKLL--DPSCYSTIESDLVFVGVVGLRDPPRGGVDKAIDDCRGAGIEVMVI 647
+ P ++++ D + + E+DL FVGVVG+ DPPR V +I CR AGI V++I
Sbjct: 568 ----TPPKREEMVLDDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMI 623
Query: 648 TGDNKSTAEAICRQIKLFSGNEDLTGRSFTGKEFMALSSTQQIEALSKHGGKVFSRAEPR 707
TGDNK TA AICR+I +F NED+ R++TG+EF L +Q EA + F+R EP
Sbjct: 624 TGDNKGTAIAICRRIGIFGENEDVADRAYTGREFDDLPLAEQREACRR--ACCFARVEPT 681
Query: 708 HKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMGITGTEV 752
HK +IV L+ E+ AMTGDGVNDAPALK A+IG+AMG +GT V
Sbjct: 682 HKSKIVEYLQSFDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAV 725
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 535 bits (1378), Expect = e-152, Method: Compositional matrix adjust.
Identities = 345/767 (44%), Positives = 474/767 (61%), Gaps = 66/767 (8%)
Query: 8 AWSWTVEQCLKEYNVKLDKGLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVK 67
A S + E+CL + V GL+ +V++ E+YG NEL E+GK LW+LV+EQF+D LV+
Sbjct: 5 AHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVR 64
Query: 68 ILLVAAFISFILAYFHSSDSGDSGFEDYXXXXXXXXXXXXXXXXXXWQESNAEKALEALK 127
ILL+AA ISF+LA+F + G+ + WQE NAE A+EALK
Sbjct: 65 ILLLAACISFVLAWF---EEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALK 121
Query: 128 KIQCESGKVLR-DGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSL 186
+ + E GKV R D V + A +VPGDIVE+ VGDKVPAD+R+ ++K+++LRV+QS L
Sbjct: 122 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSIL 181
Query: 187 TGEAMPILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIH 246
TGE++ ++K T PV Q K+NM+F+GT + G + IV TG++TEIGKI+ Q+
Sbjct: 182 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM- 240
Query: 247 DASLEESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDG--WPANVQFSF 304
A+ E+ TPL++KLDEFG +L+ I L+C+ VW++N +F D V G W
Sbjct: 241 -AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHF--NDPVHGGSW-------I 290
Query: 305 EKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVIC 364
YYFKIAVALAVAAIPEGLPAVITTCLALGTR+MA+KNAIVR LPSVETLGCT+VIC
Sbjct: 291 RGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVIC 350
Query: 365 SDKTGTLTTNQMSVTEFFTL----GRKTTISRIFHVEGTTYDPKDGGIV--DWPCYNMDA 418
SDKTGTLTTNQMSV + F + G +++ F + G+TY P +G ++ D P +
Sbjct: 351 SDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNE-FSITGSTYAP-EGEVLKNDKPIRSGQF 408
Query: 419 N-LQAMAKICAVCNDAGVYCDGP--LFRATGLPTEAALKVLVEKMGFPDVKGRNKISDTQ 475
+ L +A ICA+CND+ + + ++ G TE AL LVEKM + + RN +S +
Sbjct: 409 DGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRN-LSKVE 467
Query: 476 LAANYLIDSSTVRLGCCEWWTKRSKRVATLEFDRIRKSMSVIV------REPTGHNQLLV 529
A C + K+ TLEF R RKSMSV R G N++ V
Sbjct: 468 RAN-----------ACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVG-NKMFV 515
Query: 530 KGSVESLLERSSHVQLADGSVVPLDEPCWQLMLSRHLEMSS--KGLRCLGMAYKDELGEF 587
KG+ E +++R ++V++ + VP+ P + +LS E + LRCL +A +D
Sbjct: 516 KGAPEGVIDRCNYVRVGT-TRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRD----- 569
Query: 588 SDYYSESHPAHKKLL--DPSCYSTIESDLVFVGVVGLRDPPRGGVDKAIDDCRGAGIEVM 645
+ P ++++ D S + E+DL FVGVVG+ DPPR V +I CR AGI V+
Sbjct: 570 ------TPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVI 623
Query: 646 VITGDNKSTAEAICRQIKLFSGNEDLTGRSFTGKEFMALSSTQQIEALSKHGGKVFSRAE 705
+ITGDNK TA AICR+I +F NE++ R++TG+EF L +Q EA + F+R E
Sbjct: 624 MITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRR--ACCFARVE 681
Query: 706 PRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMGITGTEV 752
P HK +IV L+ E+ AMTGDGVNDAPALK A+IG+AMG +GT V
Sbjct: 682 PSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAV 727
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 535 bits (1378), Expect = e-152, Method: Compositional matrix adjust.
Identities = 345/767 (44%), Positives = 474/767 (61%), Gaps = 66/767 (8%)
Query: 8 AWSWTVEQCLKEYNVKLDKGLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVK 67
A S + E+CL + V GL+ +V++ E+YG NEL E+GK LW+LV+EQF+D LV+
Sbjct: 4 AHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVR 63
Query: 68 ILLVAAFISFILAYFHSSDSGDSGFEDYXXXXXXXXXXXXXXXXXXWQESNAEKALEALK 127
ILL+AA ISF+LA+F + G+ + WQE NAE A+EALK
Sbjct: 64 ILLLAACISFVLAWF---EEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALK 120
Query: 128 KIQCESGKVLR-DGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSL 186
+ + E GKV R D V + A +VPGDIVE+ VGDKVPAD+R+ ++K+++LRV+QS L
Sbjct: 121 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSIL 180
Query: 187 TGEAMPILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIH 246
TGE++ ++K T PV Q K+NM+F+GT + G + IV TG++TEIGKI+ Q+
Sbjct: 181 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM- 239
Query: 247 DASLEESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDG--WPANVQFSF 304
A+ E+ TPL++KLDEFG +L+ I L+C+ VW++N +F D V G W
Sbjct: 240 -AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHF--NDPVHGGSW-------I 289
Query: 305 EKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVIC 364
YYFKIAVALAVAAIPEGLPAVITTCLALGTR+MA+KNAIVR LPSVETLGCT+VIC
Sbjct: 290 RGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVIC 349
Query: 365 SDKTGTLTTNQMSVTEFFTL----GRKTTISRIFHVEGTTYDPKDGGIV--DWPCYNMDA 418
SDKTGTLTTNQMSV + F + G +++ F + G+TY P +G ++ D P +
Sbjct: 350 SDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNE-FSITGSTYAP-EGEVLKNDKPIRSGQF 407
Query: 419 N-LQAMAKICAVCNDAGVYCDGP--LFRATGLPTEAALKVLVEKMGFPDVKGRNKISDTQ 475
+ L +A ICA+CND+ + + ++ G TE AL LVEKM + + RN +S +
Sbjct: 408 DGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRN-LSKVE 466
Query: 476 LAANYLIDSSTVRLGCCEWWTKRSKRVATLEFDRIRKSMSVIV------REPTGHNQLLV 529
A C + K+ TLEF R RKSMSV R G N++ V
Sbjct: 467 RAN-----------ACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVG-NKMFV 514
Query: 530 KGSVESLLERSSHVQLADGSVVPLDEPCWQLMLSRHLEMSS--KGLRCLGMAYKDELGEF 587
KG+ E +++R ++V++ + VP+ P + +LS E + LRCL +A +D
Sbjct: 515 KGAPEGVIDRCNYVRVGT-TRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRD----- 568
Query: 588 SDYYSESHPAHKKLL--DPSCYSTIESDLVFVGVVGLRDPPRGGVDKAIDDCRGAGIEVM 645
+ P ++++ D S + E+DL FVGVVG+ DPPR V +I CR AGI V+
Sbjct: 569 ------TPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVI 622
Query: 646 VITGDNKSTAEAICRQIKLFSGNEDLTGRSFTGKEFMALSSTQQIEALSKHGGKVFSRAE 705
+ITGDNK TA AICR+I +F NE++ R++TG+EF L +Q EA + F+R E
Sbjct: 623 MITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRR--ACCFARVE 680
Query: 706 PRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMGITGTEV 752
P HK +IV L+ E+ AMTGDGVNDAPALK A+IG+AMG +GT V
Sbjct: 681 PSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAV 726
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 532 bits (1371), Expect = e-151, Method: Compositional matrix adjust.
Identities = 344/767 (44%), Positives = 473/767 (61%), Gaps = 66/767 (8%)
Query: 8 AWSWTVEQCLKEYNVKLDKGLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVK 67
A S + E+CL + V GL+ +V++ E+YG NEL E+GK LW+LV+EQF+D LV+
Sbjct: 4 AHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVR 63
Query: 68 ILLVAAFISFILAYFHSSDSGDSGFEDYXXXXXXXXXXXXXXXXXXWQESNAEKALEALK 127
ILL+AA ISF+LA+F + G+ + WQE NAE A+EALK
Sbjct: 64 ILLLAACISFVLAWF---EEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALK 120
Query: 128 KIQCESGKVLR-DGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSL 186
+ + E GKV R D V + A +VPGDIVE+ VGDKVPAD+R+ ++K+++LRV+QS L
Sbjct: 121 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSIL 180
Query: 187 TGEAMPILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIH 246
TGE++ ++K T PV Q K+NM+F+GT + G + IV TG++TEIGKI+ Q+
Sbjct: 181 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM- 239
Query: 247 DASLEESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDG--WPANVQFSF 304
A+ E+ TPL++KLDEFG +L+ I L+C+ VW++N +F D V G W
Sbjct: 240 -AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHF--NDPVHGGSW-------I 289
Query: 305 EKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVIC 364
YYFKIAVALAVAAIPEGLPAVITTCLALGTR+MA+KNAIVR LPSVETLGCT+VIC
Sbjct: 290 RGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVIC 349
Query: 365 SDKTGTLTTNQMSVTEFFTL----GRKTTISRIFHVEGTTYDPKDGGIV--DWPCYNMDA 418
S KTGTLTTNQMSV + F + G +++ F + G+TY P +G ++ D P +
Sbjct: 350 SXKTGTLTTNQMSVCKMFIIDKVDGDFCSLNE-FSITGSTYAP-EGEVLKNDKPIRSGQF 407
Query: 419 N-LQAMAKICAVCNDAGVYCDGP--LFRATGLPTEAALKVLVEKMGFPDVKGRNKISDTQ 475
+ L +A ICA+CND+ + + ++ G TE AL LVEKM + + RN +S +
Sbjct: 408 DGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRN-LSKVE 466
Query: 476 LAANYLIDSSTVRLGCCEWWTKRSKRVATLEFDRIRKSMSVIV------REPTGHNQLLV 529
A C + K+ TLEF R RKSMSV R G N++ V
Sbjct: 467 RAN-----------ACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVG-NKMFV 514
Query: 530 KGSVESLLERSSHVQLADGSVVPLDEPCWQLMLSRHLEMSS--KGLRCLGMAYKDELGEF 587
KG+ E +++R ++V++ + VP+ P + +LS E + LRCL +A +D
Sbjct: 515 KGAPEGVIDRCNYVRVGT-TRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRD----- 568
Query: 588 SDYYSESHPAHKKLL--DPSCYSTIESDLVFVGVVGLRDPPRGGVDKAIDDCRGAGIEVM 645
+ P ++++ D S + E+DL FVGVVG+ DPPR V +I CR AGI V+
Sbjct: 569 ------TPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVI 622
Query: 646 VITGDNKSTAEAICRQIKLFSGNEDLTGRSFTGKEFMALSSTQQIEALSKHGGKVFSRAE 705
+ITGDNK TA AICR+I +F NE++ R++TG+EF L +Q EA + F+R E
Sbjct: 623 MITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRR--ACCFARVE 680
Query: 706 PRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMGITGTEV 752
P HK +IV L+ E+ AMTGDGVNDAPALK A+IG+AMG +GT V
Sbjct: 681 PSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAV 726
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 268 bits (686), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 225/763 (29%), Positives = 350/763 (45%), Gaps = 92/763 (12%)
Query: 12 TVEQCLKEYNVKLDKGLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVKILLV 71
+V + ++Y KGLS+ + R G N L +G P + Q L ++ V
Sbjct: 57 SVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWV 116
Query: 72 AAFISFILAYFHSSDSGDSGFEDYXXXXXXXXXXXXXXXXXXWQESNAEKALEALKKIQC 131
AA I I +S+ + ++ +QE + + + K +
Sbjct: 117 AAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVP 176
Query: 132 ESGKVLRDGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSLTGEAM 191
+ V+RDG + A LV GD+VE+ GD+VPAD+R+ L+ +V+ SSLTGE+
Sbjct: 177 QQATVIRDGDKF-QINADQLVVGDLVEMKGGDRVPADIRI--LQAQGRKVDNSSLTGESE 233
Query: 192 PILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIHDASLE 251
P + SP + L+ + N+ F T + G+ +V+NTG T IG+I + +E
Sbjct: 234 P--QTRSPECTHESPLETR-NIAFFSTMCLEGTAQGLVVNTGDRTIIGRIASLA--SGVE 288
Query: 252 ESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDGWPANVQFSFEKCTYYF 311
TP+ +++ F + + L +I+ + ++F + +F
Sbjct: 289 NEKTPIAIEIEHFVDIIAGLAILFGATFFIV--------------AMCIGYTFLRAMVFF 334
Query: 312 KIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTL 371
+A+ VA +PEGL A +T CL+L +++A KN +V+ L +VETLG T+VICSDKTGTL
Sbjct: 335 ---MAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTL 391
Query: 372 TTNQMSVTEFFTLGRKTTISRIFHVEGTTYDPKDGGIVDWPCYNMDANLQAMAKICAVCN 431
T N+M+V+ + H TT D + G D +A+ ++ +CN
Sbjct: 392 TQNRMTVSHLW-------FDNHIHSADTTED-QSGQTFD----QSSETWRALCRVLTLCN 439
Query: 432 DAGVYCDGPLFRATGLPTEAALKVLVEKMGFPDVKGRNKISDTQLAANYLIDSSTVRLGC 491
AA K + + P R I D A L+ S + LG
Sbjct: 440 ------------------RAAFKSGQDAVPVPK---RIVIGDASETA--LLKFSELTLGN 476
Query: 492 CEWWTKRSKRVATLEFDRIRKSMSVI--VREPTGHNQLLV-KGSVESLLERSSHVQLADG 548
+ +R +V + F+ K I + +P +LV KG+ E +LER S + L G
Sbjct: 477 AMGYRERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSI-LIKG 535
Query: 549 SVVPLDEPCWQLMLSRHLEMSSKGLRCLGMAYKDELGEFSDYYSESHPAHKKLLDPSCYS 608
+PLDE + + +L + G R LG Y SE D +
Sbjct: 536 QELPLDEQWREAFQTAYLSLGGLGERVLGFC--------QLYLSEKDYPPGYAFDVEAMN 587
Query: 609 TIESDLVFVGVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGN 668
S L F G+V + DPPR V A+ CR AGI V+++TGD+ TA+AI + + S
Sbjct: 588 FPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEG 647
Query: 669 ----EDLTGR----------------SFTGKEFMALSSTQQIEALSKHGGKVFSRAEPRH 708
ED+ R G + + ++ +EAL H VF+R P+
Sbjct: 648 SETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQ 707
Query: 709 KQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMGITGTE 751
K IV + +G +VA+TGDGVND+PALK ADIGVAMGI G++
Sbjct: 708 KLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSD 750
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 262 bits (670), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 220/764 (28%), Positives = 365/764 (47%), Gaps = 92/764 (12%)
Query: 12 TVEQCLKEYNVKLDKGLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVKILLV 71
++++ +Y L +GL++ ++ R G N L P W Q +L +
Sbjct: 52 SLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWI 111
Query: 72 AAFISFILAYFHSSDSGDSGFEDYXXXXXXXXXXXXXXXXXXWQESNAEKALEALKKIQC 131
A + F+ ++ + ++ +QE+ + + +++ K +
Sbjct: 112 GAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVP 171
Query: 132 ESGKVLRDGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSLTGEAM 191
+ V+RDG + A +V GD+VE+ GD++PAD+R+ + +V+ SSLTGE+
Sbjct: 172 QQALVIRDGE-KSTINAEFVVAGDLVEVKGGDRIPADLRI--ISAHGCKVDNSSLTGESE 228
Query: 192 PILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIHDASLE 251
P + SP F + L+ + N+ F T V G+ +V+ TG T +G+I + LE
Sbjct: 229 P--QTRSPEFSSENPLETR-NIAFFSTNCVEGTARGVVVYTGDRTVMGRIATLA--SGLE 283
Query: 252 ESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDGWPANVQFSFEKCTYYF 311
TP+ +++ F + +T + + +I++ SW E +
Sbjct: 284 VGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGYSW-------------LEAVIFL- 329
Query: 312 KIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTL 371
+ + VA +PEGL A +T CL L ++MA+KN +V+ L +VETLG T+ ICSDKTGTL
Sbjct: 330 ---IGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTL 386
Query: 372 TTNQMSVTEFFTLGRKTTISRIFHVEGTTYDPKDGGIVDWPCYNMDANLQAMAKICAVCN 431
T N+M+V + H E T + + G D A A+++I A+CN
Sbjct: 387 TQNRMTVAHMW-------FDNQIH-EADTTENQSGAAFD----KTSATWSALSRIAALCN 434
Query: 432 DAGVYCDGPLFRATGLPTEAALKVLVEKMGFPDVKGRNKISDTQLAANYLIDSSTVRLGC 491
A +F+A G LK R+ D +A L+ + G
Sbjct: 435 RA-------VFQA-GQDNVPILK-------------RSVAGDASESA--LLKCIELCCGS 471
Query: 492 CEWWTKRSKRVATLEFDRIRK-SMSVIVREPTGHNQ--LLVKGSVESLLERSSHVQLADG 548
+ R+ ++ + F+ K +S+ E + ++ L++KG+ E +L+R S + L +G
Sbjct: 472 VQGMRDRNPKIVEIPFNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTI-LLNG 530
Query: 549 SVVPLDEPCWQLMLSRHLEMSSKGLRCLGMAYKDELGEFSDYYSESHPAHKKLLDPSCYS 608
+ PL E + + +LE+ G R LG + D Y+E +P +P+ +
Sbjct: 531 AEEPLKEDMKEAFQNAYLELGGLGERVLGFCH---FALPEDKYNEGYPFDAD--EPNFPT 585
Query: 609 TIESDLVFVGVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFS-G 667
T DL FVG++ + DPPR V A+ CR AGI+V+++TGD+ TA+AI + + + S G
Sbjct: 586 T---DLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEG 642
Query: 668 N---EDLTGR----------------SFTGKEFMALSSTQQIEALSKHGGKVFSRAEPRH 708
N ED+ R G + LS+ + L H VF+R P+
Sbjct: 643 NETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQ 702
Query: 709 KQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMGITGTEV 752
K IV + G +VA+TGDGVND+PALK ADIGVAMGI+G++V
Sbjct: 703 KLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDV 746
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 261 bits (666), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 214/767 (27%), Positives = 357/767 (46%), Gaps = 98/767 (12%)
Query: 12 TVEQCLKEYNVKLDKGLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVKILLV 71
++++ ++Y L +GL+ + R G N L P W Q +L +
Sbjct: 22 SLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLWI 81
Query: 72 AAFISFILAYFHSSDSGDSGFEDYXXXXXXXXXXXXXXXXXXWQESNAEKALEALKKIQC 131
A + F+ ++ + ++ +QE+ + K +E+ K +
Sbjct: 82 GAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVP 141
Query: 132 ESGKVLRDGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSLTGEAM 191
+ V+R+G + + A +V GD+VE+ GD++PAD+R+ + + +V+ SSLTGE+
Sbjct: 142 QQALVIRNGEKM-SINAEEVVVGDLVEVKGGDRIPADLRI--ISANGCKVDNSSLTGESE 198
Query: 192 PILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIHDASLE 251
P + SP F ++ L+ + N+ F T V G+ IV+ TG T +G+I + LE
Sbjct: 199 P--QTRSPDFTNENPLETR-NIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLA--SGLE 253
Query: 252 ESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDGWPANVQFSFEKCTYYF 311
TP+ +++ F + +T + + +I++ +W E +
Sbjct: 254 GGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTW-------------LEAVIFL- 299
Query: 312 KIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTL 371
+ + VA +PEGL A +T CL L ++MA+KN +V+ L +VETLG T+ ICSDKTGTL
Sbjct: 300 ---IGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTL 356
Query: 372 TTNQMSVTEFFTLGRKTTISRIFHVEGTTYDPKDGGIVDWPCYNMDANLQAMAKICAVCN 431
T N+M+V ++ + + G ++D A A+++I +CN
Sbjct: 357 TQNRMTVAHMWSDNQIHEADTTENQSGVSFD------------KTSATWLALSRIAGLCN 404
Query: 432 DAGVYCDGPLFRATGLPTEAALKVLVEKMGFPDVKGRNKISDTQLAANYLIDSSTVRLGC 491
A +F+A + P +K R D +A L+ + G
Sbjct: 405 RA-------VFQAN-------------QENLPILK-RAVAGDASESA--LLKCIELCCGS 441
Query: 492 CEWWTKRSKRVATLEFDRIRKSMSVIVREPTG---HNQLLVKGSVESLLERSSHVQLADG 548
+ +R ++ + F+ K I + P + L++KG+ E +L+R S + L G
Sbjct: 442 VKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSI-LIHG 500
Query: 549 SVVPLDEPCWQLMLSRHLEMSSKGLRCLGMAY---KDELGEFSDYYSESHPAHKKLLDPS 605
PLDE + +LE+ G R LG + DE +F + + LD
Sbjct: 501 KEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDE--QFPEGFQFDTDDVNFPLD-- 556
Query: 606 CYSTIESDLVFVGVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLF 665
+L FVG++ + DPPR V A+ CR AGI+V+++TGD+ TA+AI + + +
Sbjct: 557 -------NLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII 609
Query: 666 S-GN---EDLTGR----------------SFTGKEFMALSSTQQIEALSKHGGKVFSRAE 705
S GN ED+ R G + ++S Q + L H VF+R
Sbjct: 610 SEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTS 669
Query: 706 PRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMGITGTEV 752
P+ K IV + G +VA+TGDGVND+PA K ADIGVAMGI G++V
Sbjct: 670 PQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDV 716
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 258 bits (660), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 213/767 (27%), Positives = 356/767 (46%), Gaps = 98/767 (12%)
Query: 12 TVEQCLKEYNVKLDKGLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVKILLV 71
++++ ++Y L +GL+ + R G N L P W Q +L +
Sbjct: 16 SLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLWI 75
Query: 72 AAFISFILAYFHSSDSGDSGFEDYXXXXXXXXXXXXXXXXXXWQESNAEKALEALKKIQC 131
A + F+ ++ + ++ +QE+ + K +E+ K +
Sbjct: 76 GAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVP 135
Query: 132 ESGKVLRDGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSLTGEAM 191
+ V+R+G + + A +V GD+VE+ GD++PAD+R+ + + +V+ SSLTGE+
Sbjct: 136 QQALVIRNGEKM-SINAEEVVVGDLVEVKGGDRIPADLRI--ISANGCKVDNSSLTGESE 192
Query: 192 PILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIHDASLE 251
P + SP F ++ L+ + N+ F T V G+ IV+ TG T +G+I + LE
Sbjct: 193 P--QTRSPDFTNENPLETR-NIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLA--SGLE 247
Query: 252 ESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDGWPANVQFSFEKCTYYF 311
TP+ +++ F + +T + + +I++ +W E +
Sbjct: 248 GGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTW-------------LEAVIFL- 293
Query: 312 KIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTL 371
+ + VA +PEGL A +T CL L ++MA+KN +V+ L +VETLG T+ ICS KTGTL
Sbjct: 294 ---IGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKTGTL 350
Query: 372 TTNQMSVTEFFTLGRKTTISRIFHVEGTTYDPKDGGIVDWPCYNMDANLQAMAKICAVCN 431
T N+M+V ++ + + G ++D A A+++I +CN
Sbjct: 351 TQNRMTVAHMWSDNQIHEADTTENQSGVSFD------------KTSATWLALSRIAGLCN 398
Query: 432 DAGVYCDGPLFRATGLPTEAALKVLVEKMGFPDVKGRNKISDTQLAANYLIDSSTVRLGC 491
A +F+A + P +K R D +A L+ + G
Sbjct: 399 RA-------VFQAN-------------QENLPILK-RAVAGDASESA--LLKCIELCCGS 435
Query: 492 CEWWTKRSKRVATLEFDRIRKSMSVIVREPTG---HNQLLVKGSVESLLERSSHVQLADG 548
+ +R ++ + F+ K I + P + L++KG+ E +L+R S + L G
Sbjct: 436 VKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSI-LIHG 494
Query: 549 SVVPLDEPCWQLMLSRHLEMSSKGLRCLGMAY---KDELGEFSDYYSESHPAHKKLLDPS 605
PLDE + +LE+ G R LG + DE +F + + LD
Sbjct: 495 KEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDE--QFPEGFQFDTDDVNFPLD-- 550
Query: 606 CYSTIESDLVFVGVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLF 665
+L FVG++ + DPPR V A+ CR AGI+V+++TGD+ TA+AI + + +
Sbjct: 551 -------NLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII 603
Query: 666 S-GN---EDLTGR----------------SFTGKEFMALSSTQQIEALSKHGGKVFSRAE 705
S GN ED+ R G + ++S Q + L H VF+R
Sbjct: 604 SEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTS 663
Query: 706 PRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMGITGTEV 752
P+ K IV + G +VA+TGDGVND+PA K ADIGVAMGI G++V
Sbjct: 664 PQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDV 710
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 170/359 (47%), Gaps = 48/359 (13%)
Query: 27 GLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVKILLVAAFISFILAYFHSSD 86
GL+S EV +RR +YG N++ +EK ++ +K L F+ I +
Sbjct: 87 GLTSEEVVQRRRKYGLNQMKEEK------------ENHFLKFL--GFFVGPIQFVMEGAA 132
Query: 87 SGDSGFEDYXXXXXXXXXXXXXXXXXXWQESNAEKALEALKKIQCESGKVLRDGYLVPDL 146
+G ED+ QE A ++ LKK VLRDG L ++
Sbjct: 133 VLAAGLEDWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTL-KEI 191
Query: 147 PAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSLTGEAMPILKGTSPVFLDDCE 206
A +VPGDI+++ G +PAD R+ + L+V+QS+LTGE++ + K
Sbjct: 192 EAPEVVPGDILQVEEGTIIPADGRIVT-DDAFLQVDQSALTGESLAVDK----------- 239
Query: 207 LQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIHDASLEESDTPLRKKLDEFGN 266
K + VFA + V G ++ TG NT +G+ ++ AS + L+ G
Sbjct: 240 --HKGDQVFASSAVKRGEAFVVITATGDNTFVGRAAALVNAAS--GGSGHFTEVLNGIGT 295
Query: 267 RLTTAIGLVCLVVWIMNYRNFLSWDVVDGWPANVQFSFEKCTYYFKIAVALAVAAIPEGL 326
L + L+VW+ ++ + + +A+ + +P GL
Sbjct: 296 ILLILVIFTLLIVWVSSF-----------------YRSNPIVQILEFTLAITIIGVPVGL 338
Query: 327 PAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTEFFTLG 385
PAV+TT +A+G +A+K AIV+KL ++E+L ++CSDKTGTLT N++S+ + +T+
Sbjct: 339 PAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPYTVA 397
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 102/239 (42%), Gaps = 38/239 (15%)
Query: 507 FDRIRKSMSVIVREPTGHNQLLVKGSVESLLERSSHVQLADGSVVPLDEPCWQLMLSRHL 566
FD + K + +V P G VKG+ +L+ P+ E Q ++
Sbjct: 451 FDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEEDH-------PIPEEVDQAYKNKVA 503
Query: 567 EMSSKGLRCLGMAYKDELGEFSDYYSESHPAHKKLLDPSCYSTIESDLVFVGVVGLRDPP 626
E +++G R LG+A K G + +G++ DPP
Sbjct: 504 EFATRGFRSLGVARKRGEGSWE---------------------------ILGIMPCMDPP 536
Query: 627 RGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFTGKEFMALSS 686
R K + + + G+ + ++TGD A RQ+ L G +
Sbjct: 537 RHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGL--GTNIYNAERLGLGGGGDMPG 594
Query: 687 TQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAM 745
++ + + G F+ P+HK +V +L++ G +VAMTGDGVNDAP+LK AD G+A+
Sbjct: 595 SEVYDFVEAADG--FAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAV 651
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 125/248 (50%), Gaps = 43/248 (17%)
Query: 135 KVLRDGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSLTGEAMPIL 194
KVLRDG AI LVPGDIV + +GD +PAD R+ L+ L+V+QS+LTGE++P+
Sbjct: 133 KVLRDGKWSEQEAAI-LVPGDIVSIKLGDIIPADARL--LEGDPLKVDQSALTGESLPVT 189
Query: 195 KGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIHDASLEESD 254
K VF+G+T G +VI TG++T GK H
Sbjct: 190 KHPG-------------QEVFSGSTCKQGEIEAVVIATGVHTFFGKAA---HLVDSTNQV 233
Query: 255 TPLRKKLDEFGNRL--TTAIGLVCLVVWIMNYRNFLSWDVVDGWPANVQFSFEKCTYYFK 312
+K L GN + AIG+V ++ V + ++ Y
Sbjct: 234 GHFQKVLTAIGNFCICSIAIGMVIEII--------------------VMYPIQRRKYRDG 273
Query: 313 I--AVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGT 370
I + L + IP +P V++ +A+G+ +++Q+ AI +++ ++E + V+CSDKTGT
Sbjct: 274 IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGT 333
Query: 371 LTTNQMSV 378
LT N++SV
Sbjct: 334 LTLNKLSV 341
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 616 FVGVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRS 675
FVG++ L DPPR + I G+ V +ITGD + + R++ + + +
Sbjct: 479 FVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALL 538
Query: 676 FTGKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPA 735
T K+ L+S E + K G F+ P HK EIV+ L+E +V MTGDGVNDAPA
Sbjct: 539 GTHKD-ANLASIPVEELIEKADG--FAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPA 595
Query: 736 LKLADIGVAMG 746
LK ADIG+A+
Sbjct: 596 LKKADIGIAVA 606
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 34/136 (25%)
Query: 617 VGVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSF 676
V ++ + DP + + I + + +GIE++++TGD+K TAEA+ + +
Sbjct: 546 VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGI------------ 593
Query: 677 TGKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPAL 736
KV + P K IV LK+ G +VAM GDGVNDAPAL
Sbjct: 594 ---------------------KKVVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPAL 632
Query: 737 KLADIGVAMGITGTEV 752
ADIG+AMG TGT+V
Sbjct: 633 AKADIGIAMG-TGTDV 647
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 115/262 (43%), Gaps = 33/262 (12%)
Query: 122 ALEALKKIQCESGKVLRDGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRV 181
A+ AL K+ ES +++ ++ + GD++ + G+K+P D V ++ V
Sbjct: 215 AIRALLKLVPESAHRIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF---V 271
Query: 182 EQSSLTGEAMPILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKI 241
++S +TGE +P+ K E AK V T GS V ++ G +T + +I
Sbjct: 272 DESMVTGEPIPVAK----------EASAK---VIGATINQTGSFVMKALHVGSDTMLARI 318
Query: 242 QKQIHDASLEESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDGWPANVQ 301
+ + DA + S P+++ D A+ LV ++ +F+ W ++ PA
Sbjct: 319 VQMVSDA--QRSRAPIQRLADTVSGWFVPAVILVAVL-------SFIVWALLGPQPA--- 366
Query: 302 FSFEKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTT 361
+Y AV++ + A P L + +G K AQ +++ ++E +
Sbjct: 367 -----LSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIKNAEALERMEKVN 421
Query: 362 VICSDKTGTLTTNQMSVTEFFT 383
+ DKTGTLT +T T
Sbjct: 422 TLVVDKTGTLTEGHPKLTRIVT 443
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/43 (93%), Positives = 42/43 (97%)
Query: 309 YYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKL 351
YYFKIAVALAVAAIPEGLPAVITTCLALGTR+MA+KNAIVR L
Sbjct: 6 YYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 114/269 (42%), Gaps = 35/269 (13%)
Query: 116 ESNAEKALEALKKIQCESGKVLRDGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALK 175
+S +A++ L +Q ++ V+RDG + +P + GDIV + G+K+P D V +
Sbjct: 117 KSRTGEAIKKLVGLQAKTAVVIRDGKEIA-VPVEEVAVGDIVIVRPGEKIPVDGVVVEGE 175
Query: 176 TSSLRVEQSSLTGEAMPILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMN 235
+ V++S ++GE +P+LK +K + VF T G G
Sbjct: 176 S---YVDESMISGEPVPVLK-------------SKGDEVFGATINNTGVLKIRATRVGGE 219
Query: 236 TEIGKIQKQIHDASLEESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDG 295
T + +I K + DA S P+++ D+ + LV + F+ W +
Sbjct: 220 TLLAQIVKLVEDAM--GSKPPIQRLADKVVAYFIPTVLLVAI-------SAFIYWYFIAH 270
Query: 296 WPANVQFSFEKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVE 355
P + F +A+ V A P T L +G K A+ +++ ++E
Sbjct: 271 AP---------LLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALE 321
Query: 356 TLGCTTVICSDKTGTLTTNQMSVTEFFTL 384
T + DKTGTLT + VT+ L
Sbjct: 322 VAEKVTAVIFDKTGTLTKGKPEVTDLVPL 350
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 35/135 (25%)
Query: 618 GVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFT 677
G++ + D + A+ + + GI+V +ITGDN +AEAI R++ L DL
Sbjct: 450 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-----DL------ 498
Query: 678 GKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALK 737
V + P K E V+ L + EVVA GDG+NDAPAL
Sbjct: 499 ----------------------VIAEVLPHQKSEEVKKL-QAKEVVAFVGDGINDAPALA 535
Query: 738 LADIGVAMGITGTEV 752
AD+G+A+G +G++V
Sbjct: 536 QADLGIAVG-SGSDV 549
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 114/269 (42%), Gaps = 35/269 (13%)
Query: 116 ESNAEKALEALKKIQCESGKVLRDGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALK 175
+S +A++ L +Q ++ V+RDG + +P + GDIV + G+K+P D V +
Sbjct: 195 KSRTGEAIKKLVGLQAKTAVVIRDGKEIA-VPVEEVAVGDIVIVRPGEKIPVDGVVVEGE 253
Query: 176 TSSLRVEQSSLTGEAMPILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMN 235
+ V++S ++GE +P+LK +K + VF T G G
Sbjct: 254 SY---VDESMISGEPVPVLK-------------SKGDEVFGATINNTGVLKIRATRVGGE 297
Query: 236 TEIGKIQKQIHDASLEESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDG 295
T + +I K + DA S P+++ D+ + LV + F+ W +
Sbjct: 298 TLLAQIVKLVEDAM--GSKPPIQRLADKVVAYFIPTVLLVAI-------SAFIYWYFIAH 348
Query: 296 WPANVQFSFEKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVE 355
P + F +A+ V A P T L +G K A+ +++ ++E
Sbjct: 349 AP---------LLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALE 399
Query: 356 TLGCTTVICSDKTGTLTTNQMSVTEFFTL 384
T + DKTGTLT + VT+ L
Sbjct: 400 VAEKVTAVIFDKTGTLTKGKPEVTDLVPL 428
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 35/135 (25%)
Query: 618 GVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFT 677
G++ + D + A+ + + GI+V +ITGDN +AEAI R++ L DL
Sbjct: 528 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-----DL------ 576
Query: 678 GKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALK 737
V + P K E V+ L + EVVA GDG+NDAPAL
Sbjct: 577 ----------------------VIAEVLPHQKSEEVKKL-QAKEVVAFVGDGINDAPALA 613
Query: 738 LADIGVAMGITGTEV 752
AD+G+A+G +G++V
Sbjct: 614 QADLGIAVG-SGSDV 627
>pdb|2VOY|B Chain B, Cryoem Model Of Copa, The Copper Transporting Atpase
From Archaeoglobus Fulgidus
Length = 42
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 28/42 (66%), Positives = 36/42 (85%)
Query: 40 YGWNELDKEKGKPLWQLVLEQFDDTLVKILLVAAFISFILAY 81
YG NEL E+GK LW+LV+EQF+D LV+ILL+AA ISF+LA+
Sbjct: 1 YGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAW 42
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 35/135 (25%)
Query: 618 GVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFT 677
G++ + D + A+ + + GI+V ITGDN +AEAI R++ L DL
Sbjct: 136 GIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNL-----DL------ 184
Query: 678 GKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALK 737
V + P K E V+ L + EVVA GDG+NDAPAL
Sbjct: 185 ----------------------VIAEVLPHQKSEEVKKL-QAKEVVAFVGDGINDAPALA 221
Query: 738 LADIGVAMGITGTEV 752
AD+G+A+G +G++V
Sbjct: 222 QADLGIAVG-SGSDV 235
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 35/135 (25%)
Query: 618 GVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFT 677
G++ + D + A+ + + GI+V +ITGDN +AEAI R++ L DL
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-----DL------ 204
Query: 678 GKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALK 737
V + P K E V+ L + EVVA GDG+NDAPAL
Sbjct: 205 ----------------------VIAEVLPHQKSEEVKKL-QAKEVVAFVGDGINDAPALA 241
Query: 738 LADIGVAMGITGTEV 752
AD+G+A+G +G++V
Sbjct: 242 QADLGIAVG-SGSDV 255
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 337 GTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTEFFTL 384
G+RK A+ +++ ++E T + DKTGTLT + VT+ L
Sbjct: 9 GSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPL 56
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 35/135 (25%)
Query: 618 GVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFT 677
G++ + D + A+ + + GI+V +ITGDN +AEAI R++ L DL
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-----DL------ 204
Query: 678 GKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALK 737
V + P K E V+ L + EVVA GDG+NDAPAL
Sbjct: 205 ----------------------VIAEVLPHQKSEEVKKL-QAKEVVAFVGDGINDAPALA 241
Query: 738 LADIGVAMGITGTEV 752
AD+G+A+G +G++V
Sbjct: 242 QADLGIAVG-SGSDV 255
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 337 GTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTEFFTL 384
G+RK A+ +++ ++E T + DKTGTLT + VT+ L
Sbjct: 9 GSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPL 56
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 55/114 (48%), Gaps = 34/114 (29%)
Query: 633 AIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFTGKEFMALSSTQQIEA 692
A+ + + GI+V ITGDN +AEAI R++ L DL
Sbjct: 30 AVQELKRXGIKVGXITGDNWRSAEAISRELNL-----DL--------------------- 63
Query: 693 LSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMG 746
V + P K E V+ L + EVVA GDG+NDAPAL AD+G+A+G
Sbjct: 64 -------VIAEVLPHQKSEEVKKL-QAKEVVAFVGDGINDAPALAQADLGIAVG 109
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 35/135 (25%)
Query: 618 GVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFT 677
GV+ L D R +AI + GI+ M++TGDN+ A+ + ++ L
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL------------- 183
Query: 678 GKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALK 737
F+ P K E V+ +++ V AM GDGVNDAPAL
Sbjct: 184 --------------------DDYFAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAPALA 222
Query: 738 LADIGVAMGITGTEV 752
AD+G+A+G GT+V
Sbjct: 223 QADVGIAIG-AGTDV 236
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 35/135 (25%)
Query: 618 GVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFT 677
GV+ L D R +AI + GI+ M++TGDN+ A+ + ++ L
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL------------- 183
Query: 678 GKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALK 737
F+ P K E V+ +++ V AM GDGVNDAPAL
Sbjct: 184 --------------------DDYFAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAPALA 222
Query: 738 LADIGVAMGITGTEV 752
AD+G+A+G GT+V
Sbjct: 223 QADVGIAIG-AGTDV 236
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 498 RSKRVATLEFDRIRKSMSVIVREPTGHNQLLVKGSVESLLERSSHVQLADGSVVPLDEPC 557
R +++ + FD R+ MSV+V E T H+QL+ KG+++ +L S V+ +G +VPLD+
Sbjct: 55 RWQKIDEIPFDFERRRMSVVVAENTEHHQLVCKGALQEILNVCSQVR-HNGEIVPLDDIM 113
Query: 558 WQLMLSRHLEMSSKGLRCLGMAYKDELGEFSDYYSESHPAHKKLLDPSCYSTIESDLVFV 617
+ + ++ +GLR + +A K DY ESDL+
Sbjct: 114 LRKIKRVTDTLNRQGLRVVAVATKYLPAREGDYQRAD----------------ESDLILE 157
Query: 618 GVVGLRD 624
G + D
Sbjct: 158 GYIAFLD 164
>pdb|2VOY|G Chain G, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 36
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 251 EESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMN 283
E+ TPL++KLDEFG +L+ I L+C+ VW++N
Sbjct: 1 EQDKTPLQQKLDEFGEQLSKVISLICVAVWLIN 33
>pdb|1Q3I|A Chain A, Crystal Structure Of Na,K-Atpase N-Domain
Length = 214
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 8/140 (5%)
Query: 441 LFRATGLPTEAALKVLVEKMGFPDVKGRNKISDTQLAANYLIDSSTVRLGCCEWWTKRSK 500
L R GL A K E + V R+ D +A L+ + G R+
Sbjct: 37 LSRIAGLCNRAVFKAGQENIS---VSKRDTAGDASESA--LLKCIELSCGSVRKMRDRNP 91
Query: 501 RVATLEFDRIRK-SMSVIVREPTGHNQLLV-KGSVESLLERSSHVQLADGSVVPLDEPCW 558
+VA + F+ K +S+ RE + +LV KG+ E +L+R S + L G +PLD+
Sbjct: 92 KVAEISFNSTNKYQLSIHEREDNPQSHVLVMKGAPERILDRCSSI-LVQGKEIPLDKEMQ 150
Query: 559 QLMLSRHLEMSSKGLRCLGM 578
+ +LE+ G R LG
Sbjct: 151 DAFQNAYLELGGLGERVLGF 170
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 497 KRSKRVATLEFDRIRKSMSVIVREPTG---HNQLLVKGSVESLLERSSHVQLADGSVVPL 553
++ ++ + F+ K I + P + L++KG+ E +L+R S + L G PL
Sbjct: 90 EKYTKIVEIPFNSTNKYQLSIHKNPNASEPKHLLVMKGAPERILDRCSSI-LLHGKEQPL 148
Query: 554 DEPCWQLMLSRHLEMSSKGLRCLGMAY---KDELGEFSDYYSESHPAHKKLLDPSCYSTI 610
DE + +LE+ G R LG + DE +F + + D +
Sbjct: 149 DEELKDAFQNAYLELGGLGERVLGFCHLLLPDE--QFPEGFQ---------FDTDEVNFP 197
Query: 611 ESDLVFVGVVGLRDPP 626
+L FVG++ + DPP
Sbjct: 198 VDNLCFVGLISMIDPP 213
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 33/125 (26%)
Query: 622 LRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFTGKEF 681
+ D PR + ++ + G+++++++GD + + + +++ + +E+
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI--------------QEY 178
Query: 682 MALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADI 741
+S P K I+ LK+ G V M GDGVNDA AL LAD+
Sbjct: 179 -------------------YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADV 219
Query: 742 GVAMG 746
VAMG
Sbjct: 220 SVAMG 224
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 33/125 (26%)
Query: 622 LRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFTGKEF 681
+ D PR + ++ + G+++++++GD + + + +++ + +E+
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI--------------QEY 178
Query: 682 MALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADI 741
+S P K I+ LK+ G V M GDGVNDA AL LAD+
Sbjct: 179 -------------------YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADV 219
Query: 742 GVAMG 746
VAMG
Sbjct: 220 SVAMG 224
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 340 KMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTEFFTLGRKTTISRIFHVEGT 399
KM K I++ E + I DKTGTLT VT+F +G +++ VE
Sbjct: 8 KMLHKGMIIKNSNVYEKIKEIDTIIFDKTGTLTYGTPIVTQF--IGDSLSLAYAASVEAL 65
Query: 400 TYDPKDGGIVDW 411
+ P IV +
Sbjct: 66 SSHPIAKAIVKY 77
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 33/125 (26%)
Query: 622 LRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFTGKEF 681
+ D PR + ++ + G+++++++GD + + + +++ + +E+
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI--------------QEY 178
Query: 682 MALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADI 741
+S P K I+ LK+ G V M GDGVNDA AL LAD+
Sbjct: 179 -------------------YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADV 219
Query: 742 GVAMG 746
VAMG
Sbjct: 220 SVAMG 224
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 16/95 (16%)
Query: 154 GDIVELGVGDKVPADMRVAALKTSSLRVEQSSLTGEAMPILKGTSPVFLDDCELQAKENM 213
GDI+++ G K P D RV ++ S+ V++S +TGEAMP+ K +
Sbjct: 45 GDIIKVVPGGKFPVDGRV--IEGHSM-VDESLITGEAMPVAKKPG-------------ST 88
Query: 214 VFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIHDA 248
V AG+ NGS + + G +T + +I K + +A
Sbjct: 89 VIAGSINQNGSLLICATHVGADTTLSQIVKLVEEA 123
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
pdb|3HEM|A Chain A, Structure Of Mycobacterium Tuberculosis Mycolic Acid
Cyclopropane Synthase Cmaa2 In Complex With Dioctylamine
Length = 302
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 8 AWSWTVEQCLKEYNVKLDKGLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVK 67
W T+ + EY+V + GL+ E + ++ ++E+D + K + E+FD+ + +
Sbjct: 82 GWGSTMRHAVAEYDVNV-IGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDR 140
Query: 68 ILLVAAFISFILAYFHSSDSGDSGFEDY 95
I+ + AF F + +GD+GFE Y
Sbjct: 141 IVSLGAFEHF------ADGAGDAGFERY 162
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 124 EALKKI---QCESGKVLRDGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLR 180
EA+KK+ Q ++ V+RDG + +P + GDIV + G+K+P D V ++
Sbjct: 1 EAIKKLVGLQAKTAVVIRDGKEIA-VPVEEVAVGDIVIVRPGEKIPVDGVVVEGES---Y 56
Query: 181 VEQSSLTGEAMPILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGK 240
V++S ++GE +P+LK +K + VF T G G T + +
Sbjct: 57 VDESMISGEPVPVLK-------------SKGDEVFGATINNTGVLKIRATRVGGETLLAQ 103
Query: 241 IQKQIHDA 248
I K + DA
Sbjct: 104 IVKLVEDA 111
>pdb|2PFG|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Bigf2
Length = 276
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 640 AGIEVMVITGDNKSTAEAICRQI-KLFSGNEDLTGRSFTGKEFMALSSTQQIEA 692
+GI V ++TG NK AI R + +LFSG+ LT R T + ++ QQ++A
Sbjct: 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQ----AAVQQLQA 51
>pdb|1WMA|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Hydroxy-pp
pdb|3BHI|A Chain A, Crystal Structure Of Human Carbonyl Reductase 1 In Complex
With Nadp
pdb|3BHJ|A Chain A, Crystal Structure Of Human Carbonyl Reductase 1 In Complex
With Glutathione
pdb|3BHM|A Chain A, Crystal Structure Of Human Carbonyl Reductase 1 In Complex
With S-Hydroxymethylglutathione
Length = 276
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 640 AGIEVMVITGDNKSTAEAICRQI-KLFSGNEDLTGRSFTGKEFMALSSTQQIEA 692
+GI V ++TG NK AI R + +LFSG+ LT R T + ++ QQ++A
Sbjct: 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQ----AAVQQLQA 51
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 15/20 (75%)
Query: 727 GDGVNDAPALKLADIGVAMG 746
GDG ND P LK A IGVAMG
Sbjct: 217 GDGGNDIPMLKAAGIGVAMG 236
>pdb|1RFB|A Chain A, Crystal Structure Of Recombinant Bovine Interferon-Gamma
At 3.0 Angstroms Resolution
pdb|1RFB|B Chain B, Crystal Structure Of Recombinant Bovine Interferon-Gamma
At 3.0 Angstroms Resolution
Length = 119
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 31 REVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVKILLVAAFISFILAYFHS 84
RE+E +E + + D KG PL+ +L+ + D K ++ + +SF F +
Sbjct: 6 REIENLKEYFNASSPDVAKGGPLFSEILKNWKDESDKKIIQSQIVSFYFKLFEN 59
>pdb|1D9C|A Chain A, Bovine Interferon-Gamma At 2.0 Angstroms
pdb|1D9C|B Chain B, Bovine Interferon-Gamma At 2.0 Angstroms
pdb|1D9G|A Chain A, Bovine Interferon-Gamma At 2.9 Angstroms
pdb|1D9G|B Chain B, Bovine Interferon-Gamma At 2.9 Angstroms
Length = 121
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 31 REVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVKILLVAAFISFILAYFHS 84
RE+E +E + + D KG PL+ +L+ + D K ++ + +SF F +
Sbjct: 6 REIENLKEYFNASSPDVAKGGPLFSEILKNWKDESDKKIIQSQIVSFYFKLFEN 59
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 721 EVVAMTGDGVNDAPALKLADIGVAMG 746
EV+A+ GDG ND +K A +GVAMG
Sbjct: 215 EVIAI-GDGYNDLSMIKFAGMGVAMG 239
>pdb|4B6J|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
Length = 201
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 678 GKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALK 737
G EFMA A+ + G R R K E ++ ++ G ++AM GDG DA +
Sbjct: 116 GDEFMANR------AIFEDGKFQGIRLRFRDKGEFLKRFRD-GFILAM-GDGYADAKMFE 167
Query: 738 LADIGVAMG 746
AD+G+A+G
Sbjct: 168 RADMGIAVG 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,679,495
Number of Sequences: 62578
Number of extensions: 896888
Number of successful extensions: 2348
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2201
Number of HSP's gapped (non-prelim): 72
length of query: 753
length of database: 14,973,337
effective HSP length: 106
effective length of query: 647
effective length of database: 8,340,069
effective search space: 5396024643
effective search space used: 5396024643
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)