Query 004443
Match_columns 753
No_of_seqs 477 out of 2067
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 23:32:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1737 Oxysterol-binding prot 100.0 1E-110 2E-115 965.5 35.9 623 83-728 68-728 (799)
2 KOG2209 Oxysterol-binding prot 100.0 2E-91 4.4E-96 722.1 12.1 323 409-734 23-382 (445)
3 PF01237 Oxysterol_BP: Oxyster 100.0 1.4E-80 3.1E-85 679.0 18.0 293 429-731 1-297 (354)
4 KOG2210 Oxysterol-binding prot 100.0 1.1E-48 2.4E-53 424.4 15.2 238 426-666 33-282 (392)
5 cd01247 PH_GPBP Goodpasture an 99.9 1.8E-23 3.9E-28 187.1 12.2 89 95-221 1-90 (91)
6 cd01265 PH_PARIS-1 PARIS-1 ple 99.8 8.4E-21 1.8E-25 171.0 11.0 89 95-223 1-94 (95)
7 PF15413 PH_11: Pleckstrin hom 99.8 6.7E-21 1.4E-25 176.8 8.5 110 95-222 1-112 (112)
8 cd01251 PH_centaurin_alpha Cen 99.8 2.6E-19 5.7E-24 163.7 11.7 90 95-224 1-101 (103)
9 cd01233 Unc104 Unc-104 pleckst 99.8 6.4E-19 1.4E-23 160.1 12.1 90 94-223 3-98 (100)
10 cd01264 PH_melted Melted pleck 99.8 2E-18 4.2E-23 157.3 11.2 89 95-222 2-100 (101)
11 cd01238 PH_Tec Tec pleckstrin 99.8 3.2E-18 7E-23 157.3 11.1 91 94-222 1-106 (106)
12 cd01235 PH_SETbf Set binding f 99.8 5.1E-18 1.1E-22 152.9 11.6 88 96-223 2-101 (101)
13 cd01246 PH_oxysterol_bp Oxyste 99.7 1.8E-17 4E-22 145.4 11.8 90 95-222 1-91 (91)
14 cd01260 PH_CNK Connector enhan 99.7 2.8E-17 6E-22 147.5 11.1 88 95-222 2-96 (96)
15 PF15409 PH_8: Pleckstrin homo 99.7 2.4E-17 5.2E-22 146.6 9.9 86 97-223 1-89 (89)
16 cd01236 PH_outspread Outspread 99.7 5.4E-17 1.2E-21 148.8 10.9 87 96-221 2-102 (104)
17 cd01252 PH_cytohesin Cytohesin 99.7 2.1E-16 4.6E-21 149.0 12.8 92 95-226 2-116 (125)
18 cd01266 PH_Gab Gab (Grb2-assoc 99.7 2.3E-16 5E-21 145.2 10.9 87 96-222 2-107 (108)
19 cd01257 PH_IRS Insulin recepto 99.7 4.6E-16 9.9E-21 142.1 11.8 90 93-221 2-100 (101)
20 cd01250 PH_centaurin Centaurin 99.6 9E-16 1.9E-20 135.4 11.0 90 95-222 1-94 (94)
21 cd01241 PH_Akt Akt pleckstrin 99.6 2.5E-15 5.5E-20 137.2 11.3 92 94-222 2-101 (102)
22 PF00169 PH: PH domain; Inter 99.6 3.4E-14 7.3E-19 125.0 13.1 93 94-223 2-103 (104)
23 cd01245 PH_RasGAP_CG5898 RAS G 99.6 6.6E-15 1.4E-19 133.7 8.7 85 96-221 2-97 (98)
24 cd01244 PH_RasGAP_CG9209 RAS_G 99.6 2.1E-14 4.6E-19 130.5 10.7 85 97-222 5-98 (98)
25 cd01219 PH_FGD FGD (faciogenit 99.5 1.8E-13 3.9E-18 124.8 12.2 96 94-224 3-100 (101)
26 cd01263 PH_anillin Anillin Ple 99.4 6.8E-13 1.5E-17 125.1 9.8 92 94-222 2-122 (122)
27 KOG0930 Guanine nucleotide exc 99.4 6E-13 1.3E-17 137.9 10.0 97 92-228 259-380 (395)
28 cd01237 Unc112 Unc-112 pleckst 99.4 1.2E-12 2.5E-17 119.9 9.6 80 106-223 17-103 (106)
29 smart00233 PH Pleckstrin homol 99.4 9.8E-12 2.1E-16 107.2 12.7 93 94-223 2-101 (102)
30 cd01254 PH_PLD Phospholipase D 99.3 5.8E-12 1.3E-16 118.7 10.0 88 95-222 1-121 (121)
31 cd01253 PH_beta_spectrin Beta- 99.2 4.2E-11 9.1E-16 109.0 10.8 90 95-222 1-104 (104)
32 cd01220 PH_CDEP Chondrocyte-de 99.2 1.3E-10 2.8E-15 106.0 11.8 93 94-224 3-98 (99)
33 cd00821 PH Pleckstrin homology 99.2 9.2E-11 2E-15 100.3 9.7 91 95-222 1-96 (96)
34 KOG1739 Serine/threonine prote 99.2 6.8E-11 1.5E-15 130.1 9.4 94 93-224 24-117 (611)
35 KOG1090 Predicted dual-specifi 99.1 5.5E-11 1.2E-15 138.4 2.7 94 90-223 1631-1731(1732)
36 cd00900 PH-like Pleckstrin hom 99.1 2E-09 4.4E-14 92.6 11.7 87 96-222 2-99 (99)
37 cd01230 PH_EFA6 EFA6 Pleckstri 98.9 6.8E-09 1.5E-13 97.5 11.5 100 95-227 2-115 (117)
38 KOG0690 Serine/threonine prote 98.9 6.9E-10 1.5E-14 118.4 5.1 102 90-228 12-121 (516)
39 PF14593 PH_3: PH domain; PDB: 98.8 2.8E-08 6.1E-13 91.5 9.7 92 90-226 10-102 (104)
40 cd01218 PH_phafin2 Phafin2 Pl 98.7 1E-07 2.2E-12 87.9 11.8 94 94-226 5-101 (104)
41 cd01256 PH_dynamin Dynamin ple 98.7 1.8E-07 3.9E-12 84.3 10.2 89 94-222 2-104 (110)
42 cd01249 PH_oligophrenin Oligop 98.6 1.3E-07 2.7E-12 86.8 7.8 47 175-221 53-103 (104)
43 KOG0521 Putative GTPase activa 98.5 7.8E-08 1.7E-12 115.2 3.2 98 91-228 272-373 (785)
44 cd01234 PH_CADPS CADPS (Ca2+-d 98.4 4E-07 8.7E-12 82.8 6.1 89 95-224 4-111 (117)
45 PF15410 PH_9: Pleckstrin homo 98.4 1.4E-06 3E-11 82.0 9.9 103 95-223 2-118 (119)
46 cd01243 PH_MRCK MRCK (myotonic 98.4 2E-06 4.4E-11 80.5 10.1 99 92-224 1-120 (122)
47 cd01261 PH_SOS Son of Sevenles 98.3 7.2E-06 1.5E-10 76.6 11.0 102 94-224 5-110 (112)
48 cd01242 PH_ROK Rok (Rho- assoc 98.2 1.1E-05 2.4E-10 74.6 10.2 92 95-223 2-110 (112)
49 cd01262 PH_PDK1 3-Phosphoinosi 98.0 1.9E-05 4.1E-10 70.6 8.2 86 94-223 2-88 (89)
50 KOG3640 Actin binding protein 98.0 8.3E-06 1.8E-10 96.5 6.4 99 91-226 988-1109(1116)
51 KOG0248 Cytoplasmic protein Ma 98.0 3.5E-06 7.6E-11 96.7 3.1 97 93-227 249-345 (936)
52 cd01239 PH_PKD Protein kinase 97.9 7.1E-05 1.5E-09 69.8 9.2 88 95-222 2-117 (117)
53 cd01259 PH_Apbb1ip Apbb1ip (Am 97.7 7.3E-05 1.6E-09 69.4 7.0 93 95-224 2-109 (114)
54 PTZ00267 NIMA-related protein 97.7 7.6E-05 1.7E-09 85.4 8.1 98 92-224 376-477 (478)
55 KOG3723 PH domain protein Melt 97.6 4.9E-05 1.1E-09 86.1 3.7 109 87-227 729-840 (851)
56 KOG0705 GTPase-activating prot 97.5 3.9E-05 8.4E-10 87.2 2.0 45 85-129 294-341 (749)
57 PLN00188 enhanced disease resi 97.4 0.00066 1.4E-08 80.2 10.5 97 92-226 3-112 (719)
58 KOG2059 Ras GTPase-activating 97.4 0.00028 6.1E-09 82.1 7.3 96 92-228 563-669 (800)
59 cd01258 PH_syntrophin Syntroph 97.4 0.00056 1.2E-08 63.6 7.2 99 97-221 3-107 (108)
60 PF12814 Mcp5_PH: Meiotic cell 97.3 0.0016 3.6E-08 61.7 10.1 33 191-223 89-121 (123)
61 cd01222 PH_clg Clg (common-sit 97.2 0.0036 7.8E-08 57.3 10.9 87 94-223 5-95 (97)
62 PLN02866 phospholipase D 97.2 0.0019 4.2E-08 79.0 11.7 112 91-227 180-311 (1068)
63 KOG1451 Oligophrenin-1 and rel 97.0 0.0012 2.6E-08 75.5 6.8 103 89-225 261-369 (812)
64 cd01224 PH_Collybistin Collybi 97.0 0.009 2E-07 55.7 11.1 93 94-223 3-107 (109)
65 KOG0932 Guanine nucleotide exc 96.9 0.00053 1.2E-08 78.0 2.7 118 79-228 492-622 (774)
66 cd01221 PH_ephexin Ephexin Ple 96.8 0.0037 8E-08 59.7 7.5 79 109-220 27-119 (125)
67 PF15406 PH_6: Pleckstrin homo 96.8 0.0034 7.3E-08 58.1 6.4 50 171-221 62-111 (112)
68 KOG3751 Growth factor receptor 96.6 0.0041 8.8E-08 70.7 6.7 104 88-224 312-425 (622)
69 KOG1117 Rho- and Arf-GTPase ac 96.2 0.0036 7.8E-08 74.3 3.8 94 92-226 86-180 (1186)
70 KOG4424 Predicted Rho/Rac guan 96.1 0.0084 1.8E-07 69.0 6.2 101 93-228 272-374 (623)
71 KOG3531 Rho guanine nucleotide 95.9 0.0027 5.9E-08 75.2 1.2 96 93-228 924-1024(1036)
72 PF15404 PH_4: Pleckstrin homo 95.8 0.062 1.3E-06 54.7 10.1 32 95-126 1-32 (185)
73 cd01240 PH_beta-ARK Beta adren 95.5 0.0097 2.1E-07 55.2 2.7 93 93-227 3-102 (116)
74 PTZ00283 serine/threonine prot 95.2 0.043 9.4E-07 63.5 7.4 35 190-224 455-490 (496)
75 cd01228 PH_BCR-related BCR (br 95.0 0.11 2.5E-06 47.2 7.8 90 94-223 4-94 (96)
76 cd01248 PH_PLC Phospholipase C 94.6 0.17 3.7E-06 47.2 8.3 34 188-221 77-114 (115)
77 cd01226 PH_exo84 Exocyst compl 94.5 0.37 8E-06 44.5 10.1 51 174-224 46-99 (100)
78 cd01232 PH_TRIO Trio pleckstri 94.4 0.75 1.6E-05 43.4 12.1 52 173-224 56-113 (114)
79 KOG0248 Cytoplasmic protein Ma 94.3 0.014 3E-07 68.2 0.4 90 91-223 257-348 (936)
80 KOG3543 Ca2+-dependent activat 93.3 0.035 7.6E-07 64.2 1.4 93 92-225 463-567 (1218)
81 KOG1117 Rho- and Arf-GTPase ac 92.1 0.13 2.9E-06 61.6 4.0 92 90-225 189-281 (1186)
82 cd01225 PH_Cool_Pix Cool (clon 91.1 1.1 2.5E-05 42.0 8.1 79 107-222 26-108 (111)
83 cd01227 PH_Dbs Dbs (DBL's big 89.5 4.4 9.6E-05 39.4 11.0 54 172-225 61-117 (133)
84 cd01223 PH_Vav Vav pleckstrin 88.8 3.7 8.1E-05 39.0 9.7 33 193-225 79-113 (116)
85 PF15408 PH_7: Pleckstrin homo 88.6 0.24 5.3E-06 44.3 1.6 32 96-129 1-32 (104)
86 KOG1738 Membrane-associated gu 88.1 0.26 5.6E-06 57.8 1.9 40 90-129 559-601 (638)
87 KOG3551 Syntrophins (type beta 84.0 0.7 1.5E-05 51.5 2.6 102 93-221 292-399 (506)
88 KOG4807 F-actin binding protei 82.6 0.022 4.8E-07 62.8 -9.5 79 108-223 34-114 (593)
89 KOG0592 3-phosphoinositide-dep 80.4 3.4 7.3E-05 48.4 6.4 92 92-228 450-542 (604)
90 KOG3520 Predicted guanine nucl 77.5 2.6 5.6E-05 53.1 4.6 57 173-229 667-727 (1167)
91 KOG3727 Mitogen inducible gene 74.5 0.63 1.4E-05 54.0 -1.5 52 172-223 400-458 (664)
92 KOG1170 Diacylglycerol kinase 74.2 0.17 3.6E-06 60.5 -6.3 90 95-225 4-96 (1099)
93 PF15405 PH_5: Pleckstrin homo 72.1 4.6 9.9E-05 39.2 3.9 34 94-127 2-35 (135)
94 KOG3531 Rho guanine nucleotide 58.1 6.1 0.00013 48.2 2.1 98 93-229 750-850 (1036)
95 KOG0772 Uncharacterized conser 55.2 1.3E+02 0.0028 35.6 11.7 37 694-731 390-426 (641)
96 KOG4236 Serine/threonine prote 46.4 70 0.0015 38.0 8.0 37 185-222 474-522 (888)
97 KOG4424 Predicted Rho/Rac guan 45.9 15 0.00033 43.3 2.8 91 95-225 499-597 (623)
98 PF08458 PH_2: Plant pleckstri 38.9 49 0.0011 31.3 4.4 33 192-224 72-104 (110)
99 PF10146 zf-C4H2: Zinc finger- 38.9 64 0.0014 34.3 5.9 62 245-306 13-81 (230)
100 PF14254 DUF4348: Domain of un 38.1 35 0.00076 36.9 3.8 40 588-627 225-266 (273)
101 cd01231 PH_Lnk LNK-family Plec 37.1 1.9E+02 0.004 27.2 7.7 35 187-221 71-106 (107)
102 KOG4797 Transcriptional regula 36.8 61 0.0013 30.5 4.6 40 276-318 65-104 (123)
103 cd01255 PH_TIAM TIAM Pleckstri 35.9 2.1E+02 0.0047 28.4 8.4 28 198-225 129-156 (160)
104 KOG3523 Putative guanine nucle 32.4 73 0.0016 38.2 5.4 21 200-220 571-591 (695)
105 PF09783 Vac_ImportDeg: Vacuol 31.2 1.4E+02 0.003 30.5 6.6 42 605-660 36-78 (176)
106 cd05135 RasGAP_RASAL Ras GTPas 29.3 16 0.00034 40.8 -0.4 25 93-117 303-333 (333)
107 KOG3003 Molecular chaperone of 29.3 1.1E+02 0.0023 32.6 5.6 39 504-554 181-220 (236)
108 PF10504 DUF2452: Protein of u 27.0 51 0.0011 33.0 2.7 24 507-530 86-109 (159)
109 PF10146 zf-C4H2: Zinc finger- 26.8 1.4E+02 0.003 31.7 6.1 35 274-308 35-69 (230)
110 KOG2070 Guanine nucleotide exc 26.2 96 0.0021 36.4 4.9 32 190-221 372-404 (661)
111 PF12915 DUF3833: Protein of u 25.7 1.5E+02 0.0032 30.1 5.6 58 622-690 22-88 (164)
112 KOG4047 Docking protein 1 (p62 25.6 32 0.0007 39.6 1.1 30 92-121 7-38 (429)
113 KOG3551 Syntrophins (type beta 25.4 70 0.0015 36.4 3.6 53 173-225 215-273 (506)
114 cd05134 RasGAP_RASA3 RASA3 (or 24.4 28 0.00061 38.5 0.4 27 92-118 279-310 (310)
115 PRK00846 hypothetical protein; 22.4 2.5E+02 0.0055 25.0 5.8 54 242-295 5-58 (77)
116 PF07889 DUF1664: Protein of u 21.8 2.4E+02 0.0053 27.3 6.1 60 240-299 58-117 (126)
117 KOG1264 Phospholipase C [Lipid 21.4 2.8E+02 0.006 34.8 7.6 82 168-276 848-936 (1267)
118 cd05394 RasGAP_RASA2 RASA2 (or 21.1 20 0.00044 39.6 -1.5 26 93-118 283-313 (313)
119 cd05128 RasGAP_GAP1_like The G 20.9 25 0.00055 38.9 -0.9 26 92-117 285-315 (315)
No 1
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-110 Score=965.55 Aligned_cols=623 Identities=34% Similarity=0.529 Sum_probs=491.5
Q ss_pred ccccccCCCCccEEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhccccccc
Q 004443 83 VDVKINDIVGNGISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKET 162 (753)
Q Consensus 83 ~~~~~~~~~~~~~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~ 162 (753)
.+...+. .+..++|||+||++++++|++|||+|.+|.|+||+.++..+.....+.+.....|+.+....+.+.+-....
T Consensus 68 ~~~~~~~-~~~~~~g~l~k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~~q~ 146 (799)
T KOG1737|consen 68 SEAGIKK-SGASLEGILLKWRNYSKGPSSRWFVLSGGLLSYYFDNSFSKTTCGGGINLVTAWIQNGERMDICSVDGSCQI 146 (799)
T ss_pred ccccccc-ccccccceeeccccccCCcccceEEecCcceeeeccCCccccCCCCcccccccccccCCCcccchhhcccch
Confidence 3333444 667789999999999999999999999999999999998877776666666677776643222221111111
Q ss_pred ccc----cccCCCcccEEEcC-ceEEEecCCCCCcEEEEeCCeEEEEEcCC---H-HHHHHHHHHHHHHHHhccccccCC
Q 004443 163 TSQ----RLLNRKPFGEVHLK-VSSIRDSKSDDKRFSIFTGTKRLHLRAET---R-EDRFAWMEALQAVKDMFPRMSNSE 233 (753)
Q Consensus 163 ~~~----~~~~~kp~G~I~L~-~ssi~~~~~d~~rF~I~t~tkt~~LrAeS---~-edr~~WI~AL~~a~~~~~~~~~~~ 233 (753)
+++ .....+..+.++|. ...++.. ++..++.+.+.+++.+++.+. . .++..|+++++.+..+.++.....
T Consensus 147 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (799)
T KOG1737|consen 147 YLVELSKKLQRQGWLHALELAPLIAVEQT-SEYENENKSVMTKRIPLSIAVISVAQETREINVDVLRLLSSLPNLTGQLL 225 (799)
T ss_pred hhhhhhHHHhhcchhhhhhhccchhhhcc-ccccccccccccccccchhhhhcccccchhhhhhhhhhccccccchhhhh
Confidence 221 12334467777787 6667777 778888898888888888774 3 788999999999999988743221
Q ss_pred --CCCCC-----------CccccchHHHHHHHhhhhccHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 004443 234 --LMAPM-----------DSIQVSTEKLRQLLSEEGVREEVIQESEQIMRNEFAPLQSQLLLLKQKQWLLIDTLRQLETE 300 (753)
Q Consensus 234 --~~~~~-----------~~~~~ste~Lr~rL~ee~~~e~~ik~~E~i~~~E~s~~~~ql~~l~~~~~~L~dtl~qLE~e 300 (753)
...+. ..+...++++.++++.++.+...+++||+++++++...+.++....+++..|.++++|||.|
T Consensus 226 ~r~l~~~~~~~~~~s~s~~k~~~~~e~~~~k~~~s~~s~~a~~~~e~~~~s~~~~~s~~s~~~~~q~~~l~~~l~~le~q 305 (799)
T KOG1737|consen 226 LRELNALLEDKKEQSSSKSKLQERTERIALKVLTSLASVFAECDDEAELLSQSRIESDASHSESEQRIRLQEALSALENQ 305 (799)
T ss_pred hhhhccccccccccccchhhhHHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhHhhhhhhcchhhhhhhhhhHHHHHHhh
Confidence 11111 12444588999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccchhhhhhhccccccccccCCCCCCCCCCCCCCcccCCCCCCCccccCccccccccccc--ccccC------
Q 004443 301 KVDLENTVVDESQRQLIDQDASSTLRQDKFSEGTTESDDDNERVDGVEDETDEDENTFFDTRDFLSS--SSLRS------ 372 (753)
Q Consensus 301 k~~le~t~~~es~~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~~~~~~s~~de~~F~Da~~~~~~--~~~~~------ 372 (753)
+.+||..+.....++.+..... . +. . .. ....+.....+++++||||.+.++. ....+
T Consensus 306 ~~~le~a~~~~~~~~~~~~~~~----------~-~~-~-~~-~~~~~~~~~~~e~~e~~da~s~~s~~~~~~~s~~~~e~ 371 (799)
T KOG1737|consen 306 NTDLEVALRRAHAAQAALDLSK----------V-TR-L-SL-LHEEESFSESDELTEQFDAESSLSDAQESLDSNSESEN 371 (799)
T ss_pred hhhHHHHHhHhhhhhhccCccc----------c-cc-c-cc-cccccccccccccccccccccccchhhhccCCcccccc
Confidence 9999998754333332111100 0 11 1 00 1112244455666899999886541 00111
Q ss_pred CCCCCCCCCCCCc-cchhhhcccccccccc----cccccccCccccccccCCCcccccccchhHHHHhhccCCCCCCccc
Q 004443 373 NGSDFRSSSFSSD-EESLQIVESENDIDAS----IRFVGTNYPYIKRRKKLPDPVEKEKGVSLWAMIKDNIGKDLTKICL 447 (753)
Q Consensus 373 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~rR~~LP~~~~~~~~~slwsilK~~iGkDLskIsl 447 (753)
.++....+..... ..+...--+.+..... .+......+.++||++||+|..++.+++||+|||++||||||+|+|
T Consensus 372 ~~s~~~~s~~s~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~rr~~lp~~~~~~~~islw~~~k~~iGkDlskv~~ 451 (799)
T KOG1737|consen 372 EGSEDEESYTSDISDNGSSDALSADGDKSSQALNEKVPSGSGAEVARRTNLPAPSKPSSSISLWSILRNNIGKDLSKVSM 451 (799)
T ss_pred cccccccccccccccCCCccccccccccccccccccccccccccccccccCCCCcCcCCCccHHHHHhhccccccccccc
Confidence 1111111110000 0000000000000000 0000011345799999999988899999999999999999999999
Q ss_pred ccccccCCChhhhhhhcccchHHHHHHhhcCCCCCHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCeEEEEeCCCCEE
Q 004443 448 PVYFNEPLSSLQKCFEELEYSYLIDRAYEWGKRGNTLMRILNVAAFAVSGYASTEGRICKPFNPLLGETYEADYPDKGLQ 527 (753)
Q Consensus 448 Pv~fnEP~S~LQrl~e~~eY~~LLd~Aa~~~~~~d~~eRm~~V~aF~vS~y~~~~~r~~KPfNPiLGETfe~~~~d~g~r 527 (753)
||.||||+|+|||++|+|||++|||+|+++ +|+++||+||+||++|+|+++.+|.+||||||||||||++++|+|+|
T Consensus 452 PV~~nEP~S~LQr~~EdlEYs~LLd~A~~~---~d~~~R~~~vaafavS~Ya~t~~r~~KPFNPlLgETyE~~r~dkg~r 528 (799)
T KOG1737|consen 452 PVEFNEPLSLLQRVAEDLEYSELLDKAANY---EDPLERMVYVAAFAVSSYSSTSRRTAKPFNPLLGETYEMDRPDKGLR 528 (799)
T ss_pred ceecCCcchHHHHhhhhccchhhhHHHHhc---CCcHHHHHHHHHHHhhhcchhcccccCCCCcccccceEeeccCCcee
Confidence 999999999999999999999999999997 78999999999999999998899999999999999999999999999
Q ss_pred EEEEecccCCcceeEEEeCCcEEEEEEeeeeEEEEeeEEEEEeeeEEEEEeCC-ceeeeecccceeeeeecccceeeeee
Q 004443 528 FFSEKVSHHPMIVACHCQGTGWKFWGDSNLKSKFWGRSIQLDPVGVLTLEFDD-GEVFQWSKVTSSIYNLILGKLYCDHY 606 (753)
Q Consensus 528 ~iaEQVSHHPPIsA~~~e~~g~~~~g~~~~kskF~G~si~v~~~G~~~l~f~~-gE~Y~~~~ptt~i~nii~G~~~~e~~ 606 (753)
||+|||||||||+|+|||+++|.|||++.+++||||+||+|.|.|.++|+|++ |++|+|.+|+++|+|||+|++|+|++
T Consensus 529 f~sEqVSHhPPi~A~h~es~~w~~~~ds~~~sKF~Gksi~v~P~G~l~l~~~~~G~~~~w~kvtt~v~nii~Gk~~~D~~ 608 (799)
T KOG1737|consen 529 FFSEQVSHHPPISACHAESNNWTFWGDSKVKSKFWGKSIEVPPLGILHVTLKNIGEHYSWAKVTTTVHNIILGKLWVDHY 608 (799)
T ss_pred eeeeeeccCCCcccccccCCCceeeccccccccccccceeecCCceEEEEEcCCCccccccCccceecceeecccccccc
Confidence 99999999999999999999999999999999999999999999999999985 99999999999999999999999999
Q ss_pred eeEEEEcCC-c-ceEEEEEeecccccCCCeEEEEEEECCCCcEEEEEeeeecceEEEEeCcCCCCCccccCCCCceEeec
Q 004443 607 GTMRIEGNR-E-YSCKLKFKEQSIIDRNPHQVHGIVQDRNGKTVATLFGKWDESIHYVIGECSGKGKELESLSEACLLWK 684 (753)
Q Consensus 607 G~~~I~~~t-g-~~~~i~F~~k~~fg~~~~~V~G~V~d~~g~~~~~i~G~Wd~~l~~~~~~~~~k~~~~~~~~~~~~lW~ 684 (753)
|.|.|++++ + ++|+|+|++.+||+++.|+|+|.|+|++|++++++.|+|++.|++..++..+ ...+....+++|+
T Consensus 609 ge~~i~n~~~~~~~c~L~F~~~~~~~~~~~ev~g~V~~~s~~~~~~l~GkW~e~~~~~~~~~~~---~~~~~~~~~~iWk 685 (799)
T KOG1737|consen 609 GEMEITNHTTGSDKCKLKFVKAGYFSRNAREVEGSVRNKSGKKVEVLTGKWDESLYYFKVDKVG---LPEPETSEKLIWK 685 (799)
T ss_pred ccEEEecCCCCcceeEEEEeeecccCCCcceeEEEEeCCCCceeEEEeeeehhhhhhccccccc---cccCCccceeeee
Confidence 999999964 5 5799999999999999999999999999999999999999999998776543 3445678899999
Q ss_pred cCCCCCCCCCCCCcccccccccCCcCCcccCCCCCCCCCccccc
Q 004443 685 RSKPPKYPTRYNFTRFAITLNEVTPGLKVIILTASLHFSYMHTL 728 (753)
Q Consensus 685 ~~~~p~~~~~y~ft~fa~~LNe~~~~~~~~LppTDSRlRpd~~l 728 (753)
++++|+| .+|+||.||++|||++|.+++.|||||||||||||+
T Consensus 686 ~~~~Pkn-~~y~ft~fai~LNel~p~l~~~lpPTDSRlRPDqr~ 728 (799)
T KOG1737|consen 686 ANDLPKN-NKYNFTGFAIELNELTPHLKKLLPPTDSRLRPDQRA 728 (799)
T ss_pred cCCCCCC-cccccchhheecccCCchhhccCCCCCcccCcchhh
Confidence 9999988 899999999999999999999999999999999995
No 2
>KOG2209 consensus Oxysterol-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=2e-91 Score=722.08 Aligned_cols=323 Identities=37% Similarity=0.642 Sum_probs=296.7
Q ss_pred CccccccccCCCcccccccchhHHHHhhccCCCCCCcccccccccCCChhhhhhhcccchHHHHHHhhcCCCCCHHHHHH
Q 004443 409 YPYIKRRKKLPDPVEKEKGVSLWAMIKDNIGKDLTKICLPVYFNEPLSSLQKCFEELEYSYLIDRAYEWGKRGNTLMRIL 488 (753)
Q Consensus 409 ~~~~~rR~~LP~~~~~~~~~slwsilK~~iGkDLskIslPv~fnEP~S~LQrl~e~~eY~~LLd~Aa~~~~~~d~~eRm~ 488 (753)
..-.+.||+||+|+-....+|||+|||+|||||||||+|||+||||+|||||++|.|||.+||.+|+++ .||+|||.
T Consensus 23 ~~~hk~RT~LPa~m~sr~d~SIW~Ilr~ciGkelSkiTmPV~~NEPLSFLQRltEyme~~yLi~kAs~~---~~p~eRmq 99 (445)
T KOG2209|consen 23 NGIHKHRTSLPAPMFSRNDFSIWSILRKCIGKELSKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSQ---SDPVERMQ 99 (445)
T ss_pred hhhhhhcccCCccccccccccHHHHHHhhhchhhhheeeeeeeCCcHHHHHHHHHHHHHHHHHHHHhhC---CChHHHHH
Confidence 344579999999999999999999999999999999999999999999999999999999999999984 89999999
Q ss_pred HHHHHHhhhccccCCCCCCCCCCCCCCeEEEEeCCCCEEEEEEecccCCcceeEEEe--CCcEEEEEEeeeeEEEEeeEE
Q 004443 489 NVAAFAVSGYASTEGRICKPFNPLLGETYEADYPDKGLQFFSEKVSHHPMIVACHCQ--GTGWKFWGDSNLKSKFWGRSI 566 (753)
Q Consensus 489 ~V~aF~vS~y~~~~~r~~KPfNPiLGETfe~~~~d~g~r~iaEQVSHHPPIsA~~~e--~~g~~~~g~~~~kskF~G~si 566 (753)
||+|||||+.++...|..||||||||||||+.+.|.|+|||||||||||||||||+| ++.|.|.|.+.+|.||||+||
T Consensus 100 yVAAFAvsavas~weR~gKPFNPLl~et~el~r~dlg~R~i~EQVSHHPPiSAfhaEgl~~dF~fhGsi~PklkFWgksv 179 (445)
T KOG2209|consen 100 YVAAFAVSAVASQWERTGKPFNPLLGETYELEREDLGFRFISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSV 179 (445)
T ss_pred HHHHHHHHHHHHhHHHhcCCCcchhhhhhhheecccceEEeehhhccCCChhHhhhcccCcceEEeeeecccceecccee
Confidence 999999999999999999999999999999999999999999999999999999999 589999999999999999999
Q ss_pred EEEeeeEEEEEeC-CceeeeecccceeeeeecccceeeeeeeeEEEEcC-CcceEEEEEeecccccCCCeEEEEEEECCC
Q 004443 567 QLDPVGVLTLEFD-DGEVFQWSKVTSSIYNLILGKLYCDHYGTMRIEGN-REYSCKLKFKEQSIIDRNPHQVHGIVQDRN 644 (753)
Q Consensus 567 ~v~~~G~~~l~f~-~gE~Y~~~~ptt~i~nii~G~~~~e~~G~~~I~~~-tg~~~~i~F~~k~~fg~~~~~V~G~V~d~~ 644 (753)
++.|.|+++|+|. .||.|+|+.|+++|||||+|++|||++|+|.|.++ ||+.|++.|+++|+||++.|+|+|.|+|++
T Consensus 180 ea~Pkgtitle~~k~nEaYtWtnp~CcvhNiIvGklwieqyg~~eI~nh~Tg~~~vl~Fk~~G~~gk~lHkVEG~i~d~~ 259 (445)
T KOG2209|consen 180 EAEPKGTITLELLKHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEIINHKTGHKCVLNFKPCGLFGKELHKVEGHIQDKS 259 (445)
T ss_pred ecCCCceEEEEecccCcceeccCCcceeeeehhhhhhHhhcCcEEEEecCccceeEEecccccccccchhheeehhhccc
Confidence 9999999999996 79999999999999999999999999999999995 899999999999999999999999999999
Q ss_pred CcEEEEEeeeecceEEEEeCcCC----------------CCC------c---------cccCCCCceEeeccCCCCCCC-
Q 004443 645 GKTVATLFGKWDESIHYVIGECS----------------GKG------K---------ELESLSEACLLWKRSKPPKYP- 692 (753)
Q Consensus 645 g~~~~~i~G~Wd~~l~~~~~~~~----------------~k~------~---------~~~~~~~~~~lW~~~~~p~~~- 692 (753)
.++++.|.|+|++.|+.++.... ++. . .+-..+++++||+.+|.|++.
T Consensus 260 k~kl~~lYGkWTe~l~~cd~esf~~~~Kq~~r~~~~r~~s~~~~~see~dd~P~~ds~~v~~iPgSk~LW~~n~rP~n~~ 339 (445)
T KOG2209|consen 260 KKKLCALYGKWTECLYSCDPESFDAFKKQDKRNTEERKNSKQMSTSEELDDMPVPDSESVFIIPGSKLLWRINPRPPNSA 339 (445)
T ss_pred cccchhhhccHHHHHhcCCHHHHHHHHHhhhhcchhhhhhccCCchhhccCCCCCCcceeEecCCCeEEEEecCCCCCHH
Confidence 99999999999999997643210 000 0 011146789999999977764
Q ss_pred CCCCCcccccccccCCcCCcccCCCCCCCCCcccc-ccccccc
Q 004443 693 TRYNFTRFAITLNEVTPGLKVIILTASLHFSYMHT-LSLTYLH 734 (753)
Q Consensus 693 ~~y~ft~fa~~LNe~~~~~~~~LppTDSRlRpd~~-l~~~~~~ 734 (753)
+||+||.||++||||.+++...|||||||||||.| ++=|-+-
T Consensus 340 ~~y~FT~FalsLNem~~~M~~tl~pTD~RlRpDi~~mE~G~~D 382 (445)
T KOG2209|consen 340 QMYNFTSFALSLNEMDKGMESTLPPTDCRLRPDIRAMENGNID 382 (445)
T ss_pred HhhchhhheeehhhhccCcccccCCcccccCchhhhhhcCCcc
Confidence 79999999999999999999999999999999999 4655543
No 3
>PF01237 Oxysterol_BP: Oxysterol-binding protein ; InterPro: IPR000648 A number of eukaryotic proteins that seem to be involved with sterol synthesis and/or its regulation have been found [] to be evolutionary related. These include mammalian oxysterol-binding protein (OSBP), a protein of about 800 amino-acid residues that binds a variety of oxysterols (oxygenated derivatives of cholesterol); yeast OSH1, a protein of 859 residues that also plays a role in ergosterol synthesis; yeast proteins HES1 and KES1, highly related proteins of 434 residues that seem to play a role in ergosterol synthesis; and yeast hypothetical proteins YHR001w, YHR073w and YKR003w.; PDB: 3SPW_A 1ZI7_C 1ZHW_A 1ZHX_A 1ZHY_A 1ZHZ_A 1ZHT_A.
Probab=100.00 E-value=1.4e-80 Score=678.97 Aligned_cols=293 Identities=43% Similarity=0.767 Sum_probs=232.2
Q ss_pred hhHHHHhhccCCCCCCcccccccccCCChhhhhhhcccchHHHHHHhhcCCCCCHHHHHHHHHHHHhhhccccCCCCCCC
Q 004443 429 SLWAMIKDNIGKDLTKICLPVYFNEPLSSLQKCFEELEYSYLIDRAYEWGKRGNTLMRILNVAAFAVSGYASTEGRICKP 508 (753)
Q Consensus 429 slwsilK~~iGkDLskIslPv~fnEP~S~LQrl~e~~eY~~LLd~Aa~~~~~~d~~eRm~~V~aF~vS~y~~~~~r~~KP 508 (753)
|||++||+++||||++|+|||+||||+|+|||++++|+|++||++|+. ..||++||++|++|+||+|+.+..|.+||
T Consensus 1 s~w~~lK~~~G~dLs~islPv~~~eP~S~Lqr~~~~~~y~~lL~~Aa~---~~d~~eR~~~V~~f~~S~~~~~~~~~~KP 77 (354)
T PF01237_consen 1 SIWSFLKQKIGKDLSRISLPVFFNEPRSFLQRLAEDFEYPDLLDKAAE---EDDPLERMLYVAAFALSSYSSTPGRTKKP 77 (354)
T ss_dssp HHHHHHHHT--S-GGGS---GGGEEEEEGGGGGGGGSSSHHHHHGGGG---S-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CHHHHhhhcCCCChhcCccCceecCCCcHHHhhhhhhhChHHHhccCC---CCCHHHHHHHHHHHHHhhhhhhcCCCCcC
Confidence 699999999999999999999999999999999999999999999997 48999999999999999999887788999
Q ss_pred CCCCCCCeEEEEeCCCCEEEEEEecccCCcceeEEEeCCcEEEEEEeeeeEEEEeeEEEEEeeeEEEEEeCC-ceeeeec
Q 004443 509 FNPLLGETYEADYPDKGLQFFSEKVSHHPMIVACHCQGTGWKFWGDSNLKSKFWGRSIQLDPVGVLTLEFDD-GEVFQWS 587 (753)
Q Consensus 509 fNPiLGETfe~~~~d~g~r~iaEQVSHHPPIsA~~~e~~g~~~~g~~~~kskF~G~si~v~~~G~~~l~f~~-gE~Y~~~ 587 (753)
||||||||||+.++ +|++|+||||||||||||||++++||+++|+..+++||+|+||++.+.|.++|+|++ ||+|+|+
T Consensus 78 fNPiLGETfe~~~~-~~~~~~aEQVSHHPPisa~~~~~~~~~~~g~~~~~~kf~g~sv~~~~~G~~~i~f~~~~e~Y~~~ 156 (354)
T PF01237_consen 78 FNPILGETFELVRP-DGTRFIAEQVSHHPPISAFHAEGRGWKFYGHIEPKSKFWGNSVEVNPIGKVTITFPDGGETYTWT 156 (354)
T ss_dssp E---TT-EE--TT--T-EEEEEEEEETTTTEEEEEEEETTEEEEEEEEEEEEE-TT-EEEEEEEEEEEEET--TEEEEEE
T ss_pred cCCCCcceeeeccC-ceEEEEEecccCCCCceEEEEEcCCEEEEEEEeeeEEEeceEEEEEECCcEEEEEcCCceEEEEe
Confidence 99999999999988 799999999999999999999999999999999999999999999999999999985 7999999
Q ss_pred ccceeeeeecccceeeeeeeeEEEEcC-CcceEEEEEeecccccCCCeEEEEEEECCCCcEEEEEeeeecceEEEEeCcC
Q 004443 588 KVTSSIYNLILGKLYCDHYGTMRIEGN-REYSCKLKFKEQSIIDRNPHQVHGIVQDRNGKTVATLFGKWDESIHYVIGEC 666 (753)
Q Consensus 588 ~ptt~i~nii~G~~~~e~~G~~~I~~~-tg~~~~i~F~~k~~fg~~~~~V~G~V~d~~g~~~~~i~G~Wd~~l~~~~~~~ 666 (753)
+|++.|+||++|++|+|++|+|+|+|. +|++|+|+|+++|||+++.+.|+|+|++.+|+++++|.|+||+.|++...+.
T Consensus 157 ~p~~~i~gi~~G~~~~e~~G~~~i~~~~tg~~~~i~f~~~~~f~~~~~~v~G~I~~~~~~~~~~i~G~W~~~i~~~~~~~ 236 (354)
T PF01237_consen 157 KPTTYIRGIIFGKRYIEHVGKMVITCHKTGLKAEIEFKPKGWFSGKSNEVEGKIYDSKGKPIYKISGKWDEEIYIKDVKN 236 (354)
T ss_dssp --SEEEESTTTTS-EEEEESEEEEEET-TS-EEEEEEETSSSTSSSTTEEEEEEESSGGG-SEEEEEETTSEEEEEETT-
T ss_pred cCcEEEeeeecccEEEEecCCEEEEcCCcceEEEEEEecCCcccccceeeEEEEEEccCceeEEeeeeeCCeEEEEeccc
Confidence 999999999999999999999999995 8999999999999999999999999999889999999999999999987652
Q ss_pred CCCCccccCCCCceEeeccCCCCCCC-CCCCCcccccccccCCcCCcccCCCCCCCCCccccc-ccc
Q 004443 667 SGKGKELESLSEACLLWKRSKPPKYP-TRYNFTRFAITLNEVTPGLKVIILTASLHFSYMHTL-SLT 731 (753)
Q Consensus 667 ~~k~~~~~~~~~~~~lW~~~~~p~~~-~~y~ft~fa~~LNe~~~~~~~~LppTDSRlRpd~~l-~~~ 731 (753)
.. ..+..+++|++++.|.+. .+|+||.||++|||+++++.+.+||||||||||+++ +-|
T Consensus 237 ~~------~~~~~~~lw~~~~~~~~~~~~~~ft~fa~~LNe~~~~~~~~~~ptDSr~R~d~~al~~g 297 (354)
T PF01237_consen 237 DS------DTGESKLLWDANPLPPNPKKYYGFTQFAIPLNELTPELEEKLPPTDSRWRPDQRALENG 297 (354)
T ss_dssp ---------GGGEEEEEETTTS-SS--B----------G-------G-GS-TTBHHHHHHHHHHHHT
T ss_pred cc------cCCCceEEEECCCCcccccceecccccccccccccccccccCCchhccchHHHHHHHcC
Confidence 11 123678999999977654 689999999999999999989999999999999995 443
No 4
>KOG2210 consensus Oxysterol-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-48 Score=424.41 Aligned_cols=238 Identities=24% Similarity=0.347 Sum_probs=217.3
Q ss_pred ccchhHHHHhh-ccCCCCCCcccccccccCCChhhhhhhcccchHHHHHHhhcCCCCCHHHHHHHHHHHHhhhccccCCC
Q 004443 426 KGVSLWAMIKD-NIGKDLTKICLPVYFNEPLSSLQKCFEELEYSYLIDRAYEWGKRGNTLMRILNVAAFAVSGYASTEGR 504 (753)
Q Consensus 426 ~~~slwsilK~-~iGkDLskIslPv~fnEP~S~LQrl~e~~eY~~LLd~Aa~~~~~~d~~eRm~~V~aF~vS~y~~~~~r 504 (753)
.+..||.++++ .+|+|||+|+||.|++||+|+||++++.+.+++||-.|.. .+||++||+.|++|++|+|+.....
T Consensus 33 ~~s~i~~L~sq~rpg~DLs~v~LPtfile~rs~Le~~~~~~~~~dll~~~~~---~~~p~~R~~~VvkwylS~~~~~~~~ 109 (392)
T KOG2210|consen 33 GKSIILDLLSQLRPGMDLSRVVLPTFILEPRSLLEKYTDFSYHPDLLLEASS---EADPLERMLAVVKWYLSGFHAGPKG 109 (392)
T ss_pred ccceeecHhhhccCCCCcccccchhhhhhhHHHHHHhhhhhhccchhccccc---CCCHHHHhhhheeeeehhccccccc
Confidence 34559999998 8999999999999999999999999999988999877765 5899999999999999999988766
Q ss_pred CCCCCCCCCCCeEEEEeC-----C-CCEEEEEEecccCCcceeEEEeC--CcEEEEEEeeeeEEEEeeEEEEEeeeEEEE
Q 004443 505 ICKPFNPLLGETYEADYP-----D-KGLQFFSEKVSHHPMIVACHCQG--TGWKFWGDSNLKSKFWGRSIQLDPVGVLTL 576 (753)
Q Consensus 505 ~~KPfNPiLGETfe~~~~-----d-~g~r~iaEQVSHHPPIsA~~~e~--~g~~~~g~~~~kskF~G~si~v~~~G~~~l 576 (753)
.+|||||||||||.|.|. + ..+.|+||||||||||||||++. +|+++.|++.+|+||.|+|+.|.+.|..+|
T Consensus 110 ~~~PyNPILGEtF~~~w~~~~~p~~~~~~~iAEQVSHHPPvSAf~~~~~~~~i~v~g~v~~kSkF~G~s~~V~~~G~~~l 189 (392)
T KOG2210|consen 110 RKKPYNPILGETFTCHWKYPPHPSKGDTVFVAEQVSHHPPVSAFYVTCPKKGIQVDGHVWAKSKFLGNSIAVAMIGKGVL 189 (392)
T ss_pred ccCCCCccchhhcccccccCCCCCCceEEEEeecccCCCCcceeeEEccccCeEEEEEEeecccccccceeEEEcCCcEE
Confidence 778999999999999983 2 35899999999999999999975 699999999999999999999999999999
Q ss_pred EeC-CceeeeecccceeeeeecccceeeeeeeeEEEEc-CCcceEEEEEeecccccCCCeEEEEEEECCCC-cEEEEEee
Q 004443 577 EFD-DGEVFQWSKVTSSIYNLILGKLYCDHYGTMRIEG-NREYSCKLKFKEQSIIDRNPHQVHGIVQDRNG-KTVATLFG 653 (753)
Q Consensus 577 ~f~-~gE~Y~~~~ptt~i~nii~G~~~~e~~G~~~I~~-~tg~~~~i~F~~k~~fg~~~~~V~G~V~d~~g-~~~~~i~G 653 (753)
+|. .+|+|.++.|..++.|+++|.+|+|+.|++.|.| ++++.+.+.|+.++|+|+..+.+.+.|+...+ +..+.|+|
T Consensus 190 ~ll~~~E~Y~~t~P~~~~rg~~~~~p~velggkv~I~c~kt~~~a~~~~~~~~f~g~~~s~~~~~ik~~~~~~~~~~i~G 269 (392)
T KOG2210|consen 190 KLLDHDETYLITFPNAYARGILLGAPWVELGGKVVIECPKTGLSAILESILKPFLGGKNSFNARSIKGPIDKKDFCSISG 269 (392)
T ss_pred EEEecCcceeeccCCceeeeeeeccceEecCceEEEEcCCcceeeeEeeccCcccccccccceEEEEcccccccccccce
Confidence 986 5999999999999999999999999999999999 57999999999999999999999999997543 45678999
Q ss_pred eecceEEEEeCcC
Q 004443 654 KWDESIHYVIGEC 666 (753)
Q Consensus 654 ~Wd~~l~~~~~~~ 666 (753)
+||+.|+++..+.
T Consensus 270 ~W~~~~~~k~~~~ 282 (392)
T KOG2210|consen 270 EWDGVMYAKYAKS 282 (392)
T ss_pred eecccEEEEEcCC
Confidence 9999999987654
No 5
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.90 E-value=1.8e-23 Score=187.11 Aligned_cols=89 Identities=38% Similarity=0.694 Sum_probs=79.2
Q ss_pred EEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCccc
Q 004443 95 ISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPFG 174 (753)
Q Consensus 95 ~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~G 174 (753)
++|||.||+|++|+||+|||||++|.|+||+++.+. ...|+|
T Consensus 1 ~~G~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~--------------------------------------~~~~~G 42 (91)
T cd01247 1 TNGVLSKWTNYINGWQDRYFVLKEGNLSYYKSEAEK--------------------------------------SHGCRG 42 (91)
T ss_pred CceEEEEeccccCCCceEEEEEECCEEEEEecCccC--------------------------------------cCCCcE
Confidence 479999999999999999999999999999986641 123789
Q ss_pred EEEcCceEEEecCCCCCcEEEEeCC-eEEEEEcCCHHHHHHHHHHHHH
Q 004443 175 EVHLKVSSIRDSKSDDKRFSIFTGT-KRLHLRAETREDRFAWMEALQA 221 (753)
Q Consensus 175 ~I~L~~ssi~~~~~d~~rF~I~t~t-kt~~LrAeS~edr~~WI~AL~~ 221 (753)
.|+|+.|.|..+..+..+|.|.++. |+|+|+|+|++||++||+||+.
T Consensus 43 ~I~L~~~~i~~~~~~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 43 SIFLKKAIIAAHEFDENRFDISVNENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEECcccEEEcCCCCCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 9999999998877778899997765 9999999999999999999984
No 6
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.84 E-value=8.4e-21 Score=171.02 Aligned_cols=89 Identities=30% Similarity=0.522 Sum_probs=77.6
Q ss_pred EEEEEEeecC--CCCCceeeEEEEe--CCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCC
Q 004443 95 ISGVLYKWVN--YGKGWRPRWFVLQ--DGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNR 170 (753)
Q Consensus 95 ~eG~L~K~~n--~~kgWk~RWFVL~--~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~ 170 (753)
++|||.|+++ ..|+||+|||||+ ++.|+||+.+.+ .
T Consensus 1 l~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d----------------------------------------~ 40 (95)
T cd01265 1 LCGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQD----------------------------------------A 40 (95)
T ss_pred CcccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCc----------------------------------------c
Confidence 3799999986 6899999999997 468999998654 2
Q ss_pred CcccEEEcCceEEEecCCC-CCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 004443 171 KPFGEVHLKVSSIRDSKSD-DKRFSIFTGTKRLHLRAETREDRFAWMEALQAVK 223 (753)
Q Consensus 171 kp~G~I~L~~ssi~~~~~d-~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~ 223 (753)
+|.|.|+|..+++..+..+ +..|.|+|++|+|+|+|+|++||++||+||+.++
T Consensus 41 ~p~G~I~L~~~~~~~~~~~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~~~ 94 (95)
T cd01265 41 KPLGRVDLSGAAFTYDPREEKGRFEIHSNNEVIALKASSDKQMNYWLQALQSKR 94 (95)
T ss_pred cccceEECCccEEEcCCCCCCCEEEEEcCCcEEEEECCCHHHHHHHHHHHHhhc
Confidence 4899999999887766555 7899999999999999999999999999999875
No 7
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.83 E-value=6.7e-21 Score=176.81 Aligned_cols=110 Identities=50% Similarity=0.849 Sum_probs=61.2
Q ss_pred EEEEEEeecCC-CCCceeeEEEEe-CCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCc
Q 004443 95 ISGVLYKWVNY-GKGWRPRWFVLQ-DGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKP 172 (753)
Q Consensus 95 ~eG~L~K~~n~-~kgWk~RWFVL~-~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp 172 (753)
++|||+||+|+ ++|||+|||||+ ||+|+|||...+ ..+.+|+|..+.+.+.+.+........ .
T Consensus 1 k~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~------~ 65 (112)
T PF15413_consen 1 KEGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPRD---------KKDVRIIGEESSRVIRKGDWSISRRSS------R 65 (112)
T ss_dssp EEEEEEE--TTS-S--EEEEEEEE-TTEEEEESS----------------------TT-SB-SEEEE---GGG------T
T ss_pred CCceEEEecCCCCcCccccEEEEEeCCEEEEeecccc---------cccccccccchhceEeecccCcccccc------c
Confidence 68999999998 999999999999 999999998443 345677777766665544433322110 0
Q ss_pred ccEEEcCceEEEecCCCCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 004443 173 FGEVHLKVSSIRDSKSDDKRFSIFTGTKRLHLRAETREDRFAWMEALQAV 222 (753)
Q Consensus 173 ~G~I~L~~ssi~~~~~d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a 222 (753)
...++.. . .....+.+.|.|+|++|+|||+|+|++|+.+||+||++|
T Consensus 66 ~~~~~~~-~--~~~~~~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 66 IQGIKDK-N--PFGEIHLKVFSIFTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -EEEES--T----SS-SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred ccccccC-C--cccCcCCCCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 0111111 0 112234677889999999999999999999999999986
No 8
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.80 E-value=2.6e-19 Score=163.71 Aligned_cols=90 Identities=28% Similarity=0.432 Sum_probs=74.3
Q ss_pred EEEEEEeecCC-CCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCcc
Q 004443 95 ISGVLYKWVNY-GKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPF 173 (753)
Q Consensus 95 ~eG~L~K~~n~-~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~ 173 (753)
++|||.|+|.. .++||+|||||+++.|+||+++.+ ..|.
T Consensus 1 KeG~L~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d----------------------------------------~~~~ 40 (103)
T cd01251 1 KEGFMEKTGPKHTEGFKKRWFTLDDRRLMYFKDPLD----------------------------------------AFAK 40 (103)
T ss_pred CceeEEecCCCCCCCceeEEEEEeCCEEEEECCCCC----------------------------------------cCcC
Confidence 48999999986 699999999999999999998654 2378
Q ss_pred cEEEcCce----EEEecC-----CC-CCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 004443 174 GEVHLKVS----SIRDSK-----SD-DKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKD 224 (753)
Q Consensus 174 G~I~L~~s----si~~~~-----~d-~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~ 224 (753)
|+|.|..+ +|.... .+ ...|.|.|++|+|+|.|+|++||.+||+||+.|+.
T Consensus 41 G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 41 GEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred cEEEeeccccceeEeccCCccccccccceEEEEeCCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 99999743 343221 11 23799999999999999999999999999999975
No 9
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.79 E-value=6.4e-19 Score=160.12 Aligned_cols=90 Identities=19% Similarity=0.350 Sum_probs=78.6
Q ss_pred cEEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCcc
Q 004443 94 GISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPF 173 (753)
Q Consensus 94 ~~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~ 173 (753)
.++|||.|+++..+.|++|||||+++.|+|||++.+ ..|.
T Consensus 3 ~k~G~L~Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~----------------------------------------~~~~ 42 (100)
T cd01233 3 SKKGYLNFPEETNSGWTRRFVVVRRPYLHIYRSDKD----------------------------------------PVER 42 (100)
T ss_pred ceeEEEEeeCCCCCCcEEEEEEEECCEEEEEccCCC----------------------------------------ccEe
Confidence 578999999999999999999999999999998654 2378
Q ss_pred cEEEcCceEEEecCCC------CCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 004443 174 GEVHLKVSSIRDSKSD------DKRFSIFTGTKRLHLRAETREDRFAWMEALQAVK 223 (753)
Q Consensus 174 G~I~L~~ssi~~~~~d------~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~ 223 (753)
|.|+|..++|....++ +..|.|.++.|+|+|+|+|++|+++||+||+...
T Consensus 43 ~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 43 GVINLSTARVEHSEDQAAMVKGPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred eEEEecccEEEEccchhhhcCCCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 9999998887655432 4689999999999999999999999999998764
No 10
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.77 E-value=2e-18 Score=157.31 Aligned_cols=89 Identities=25% Similarity=0.424 Sum_probs=74.5
Q ss_pred EEEEEEeecC---CCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCC
Q 004443 95 ISGVLYKWVN---YGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRK 171 (753)
Q Consensus 95 ~eG~L~K~~n---~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~k 171 (753)
++|||.|.++ ++|.||+|||+|+++.|+|||.+... ++
T Consensus 2 ~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~---------------------------------------~~ 42 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKD---------------------------------------DP 42 (101)
T ss_pred cceEEeecCccceeeecceeEEEEEeCCEEEEEeccCcc---------------------------------------CC
Confidence 5899999988 89999999999999999999975431 22
Q ss_pred cccEEEcCceE-EEecCCC------CCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 004443 172 PFGEVHLKVSS-IRDSKSD------DKRFSIFTGTKRLHLRAETREDRFAWMEALQAV 222 (753)
Q Consensus 172 p~G~I~L~~ss-i~~~~~d------~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a 222 (753)
+.|+|+|..|. |+..... ++.|.|.|++|+|+|+|+|++++++||++|+.|
T Consensus 43 ~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 43 DDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred CCceEEcccceEEeeccccccccccCcEEEEEcCCceEEEEeCCHHHHHHHHHHHHhh
Confidence 46999998876 4333221 357999999999999999999999999999976
No 11
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.76 E-value=3.2e-18 Score=157.32 Aligned_cols=91 Identities=24% Similarity=0.298 Sum_probs=72.9
Q ss_pred cEEEEEEeecCC-----CCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhccccccccccccc
Q 004443 94 GISGVLYKWVNY-----GKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLL 168 (753)
Q Consensus 94 ~~eG~L~K~~n~-----~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~ 168 (753)
+++|||+|++.. .++||+|||||+++.|+||+++.+.
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~-------------------------------------- 42 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEK-------------------------------------- 42 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccc--------------------------------------
Confidence 468999999632 2489999999999999999985431
Q ss_pred CCCcccEEEcCceEEEecC----------CCCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 004443 169 NRKPFGEVHLKVSSIRDSK----------SDDKRFSIFTGTKRLHLRAETREDRFAWMEALQAV 222 (753)
Q Consensus 169 ~~kp~G~I~L~~ssi~~~~----------~d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a 222 (753)
..+|+|+|+|..+++.+.. .+...|.|++++|+|+|+|+|++||++||+||+.+
T Consensus 43 ~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 43 RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDEGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred ccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCCCeEEEEcCCHHHHHHHHHHHHhC
Confidence 1248999999987644321 12457899999999999999999999999999864
No 12
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.75 E-value=5.1e-18 Score=152.88 Aligned_cols=88 Identities=30% Similarity=0.500 Sum_probs=72.1
Q ss_pred EEEEEeecCCCCCceeeEEEEe--CCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCcc
Q 004443 96 SGVLYKWVNYGKGWRPRWFVLQ--DGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPF 173 (753)
Q Consensus 96 eG~L~K~~n~~kgWk~RWFVL~--~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~ 173 (753)
+|||.|+|+..+.||+|||||. ++.|+||+++.+ .+|+
T Consensus 2 ~G~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~----------------------------------------~~~~ 41 (101)
T cd01235 2 EGYLYKRGALLKGWKPRWFVLDPDKHQLRYYDDFED----------------------------------------TAEK 41 (101)
T ss_pred eEEEEEcCCCCCCccceEEEEECCCCEEEEecCCCC----------------------------------------Cccc
Confidence 7999999999999999999998 569999997543 2478
Q ss_pred cEEEcCceE-EEecC---------CCCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 004443 174 GEVHLKVSS-IRDSK---------SDDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVK 223 (753)
Q Consensus 174 G~I~L~~ss-i~~~~---------~d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~ 223 (753)
|.|+|..++ |.... .....|.|.+++|+|+|+|+|++|+++||.||+.++
T Consensus 42 g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 42 GCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred eEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 999998765 33211 112347788999999999999999999999999864
No 13
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.74 E-value=1.8e-17 Score=145.35 Aligned_cols=90 Identities=49% Similarity=0.881 Sum_probs=79.6
Q ss_pred EEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCccc
Q 004443 95 ISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPFG 174 (753)
Q Consensus 95 ~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~G 174 (753)
++|||+|+++..++|++|||||+++.|+||+++.+. ...|.|
T Consensus 1 ~~G~L~k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~--------------------------------------~~~~~~ 42 (91)
T cd01246 1 VEGWLLKWTNYLKGWQKRWFVLDNGLLSYYKNKSSM--------------------------------------RGKPRG 42 (91)
T ss_pred CeEEEEEecccCCCceeeEEEEECCEEEEEecCccC--------------------------------------CCCceE
Confidence 589999999888999999999999999999986541 013789
Q ss_pred EEEcCceEEEecCCCCCcEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHH
Q 004443 175 EVHLKVSSIRDSKSDDKRFSIFTGT-KRLHLRAETREDRFAWMEALQAV 222 (753)
Q Consensus 175 ~I~L~~ssi~~~~~d~~rF~I~t~t-kt~~LrAeS~edr~~WI~AL~~a 222 (753)
.|+|..+.+..+..+...|.|.++. ++|+|+|+|.+|+.+||.||+.|
T Consensus 43 ~i~l~~~~~~~~~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 43 TILLSGAVISEDDSDDKCFTIDTGGDKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred EEEeceEEEEECCCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHhC
Confidence 9999999988877778899999887 99999999999999999999875
No 14
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.72 E-value=2.8e-17 Score=147.49 Aligned_cols=88 Identities=28% Similarity=0.478 Sum_probs=73.9
Q ss_pred EEEEEEeecCCC----CCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCC
Q 004443 95 ISGVLYKWVNYG----KGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNR 170 (753)
Q Consensus 95 ~eG~L~K~~n~~----kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~ 170 (753)
++|||+|++..+ +.|++|||||.++.|+||+.+.+ .
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~----------------------------------------~ 41 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQD----------------------------------------E 41 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCC----------------------------------------C
Confidence 589999997544 48999999999999999998654 2
Q ss_pred CcccEEEcCceEEEecCCC--CCcEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHH
Q 004443 171 KPFGEVHLKVSSIRDSKSD--DKRFSIFTGT-KRLHLRAETREDRFAWMEALQAV 222 (753)
Q Consensus 171 kp~G~I~L~~ssi~~~~~d--~~rF~I~t~t-kt~~LrAeS~edr~~WI~AL~~a 222 (753)
+|.|.|.|..++|....+. ...|.|.++. |+|+|+|+|++|+++||.||+.|
T Consensus 42 ~~~~~I~L~~~~v~~~~~~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 42 KAEGLIFLSGFTIESAKEVKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred ccceEEEccCCEEEEchhcCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 3789999999887654332 4568888887 99999999999999999999875
No 15
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.72 E-value=2.4e-17 Score=146.56 Aligned_cols=86 Identities=36% Similarity=0.621 Sum_probs=76.2
Q ss_pred EEEEee-cCCCCCceeeEEEE--eCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCcc
Q 004443 97 GVLYKW-VNYGKGWRPRWFVL--QDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPF 173 (753)
Q Consensus 97 G~L~K~-~n~~kgWk~RWFVL--~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~ 173 (753)
|||.|+ .+..+||++||||| ++|+|+||+++.+ .+.+
T Consensus 1 G~llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~----------------------------------------~~~r 40 (89)
T PF15409_consen 1 GWLLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNS----------------------------------------GKLR 40 (89)
T ss_pred CcceeeccccCCCceeEEEEEEcCCcEEEEEecCCC----------------------------------------CeeE
Confidence 788876 78999999999999 8999999997553 1368
Q ss_pred cEEEcCceEEEecCCCCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 004443 174 GEVHLKVSSIRDSKSDDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVK 223 (753)
Q Consensus 174 G~I~L~~ssi~~~~~d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~ 223 (753)
|.|+|..|.|..++ +.++|.|.+|..+|||+|.|.+|++.|+.||+.|+
T Consensus 41 Gsi~v~~a~is~~~-~~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~a~ 89 (89)
T PF15409_consen 41 GSIDVSLAVISANK-KSRRIDIDSGDEIWHLKAKSQEDFQRWVSALQKAK 89 (89)
T ss_pred eEEEccceEEEecC-CCCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHhcC
Confidence 99999999887654 67899999999999999999999999999999874
No 16
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.71 E-value=5.4e-17 Score=148.84 Aligned_cols=87 Identities=26% Similarity=0.449 Sum_probs=70.5
Q ss_pred EEEEEeec---------CCCCCceeeEEEEe-CCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccc
Q 004443 96 SGVLYKWV---------NYGKGWRPRWFVLQ-DGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQ 165 (753)
Q Consensus 96 eG~L~K~~---------n~~kgWk~RWFVL~-~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~ 165 (753)
+|||.|.. ...|+||+|||||+ +|.|+||+.+..
T Consensus 2 ~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~------------------------------------ 45 (104)
T cd01236 2 CGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMP------------------------------------ 45 (104)
T ss_pred cceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCC------------------------------------
Confidence 69999973 24799999999996 688888876432
Q ss_pred cccCCCcccEEEcCceEEEecCCC----CCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHH
Q 004443 166 RLLNRKPFGEVHLKVSSIRDSKSD----DKRFSIFTGTKRLHLRAETREDRFAWMEALQA 221 (753)
Q Consensus 166 ~~~~~kp~G~I~L~~ssi~~~~~d----~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~ 221 (753)
..+|+|+|+|..|....+..+ ...|.|.|+.|+|+|.|+|++|+++||++|..
T Consensus 46 ---~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 46 ---TTLPQGTIDMNQCTDVVDAEARTGQKFSICILTPDKEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred ---CcccceEEEccceEEEeecccccCCccEEEEECCCceEEEEeCCHHHHHHHHHHHHh
Confidence 135899999998875554332 35799999999999999999999999999964
No 17
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.69 E-value=2.1e-16 Score=148.95 Aligned_cols=92 Identities=26% Similarity=0.482 Sum_probs=77.1
Q ss_pred EEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCccc
Q 004443 95 ISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPFG 174 (753)
Q Consensus 95 ~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~G 174 (753)
++|||+|+++..+.|++|||||.++.|+||+++.+ .+|.|
T Consensus 2 k~G~L~K~~~~~~~WkkRwfvL~~~~L~yyk~~~~----------------------------------------~~~~g 41 (125)
T cd01252 2 REGWLLKQGGRVKTWKRRWFILTDNCLYYFEYTTD----------------------------------------KEPRG 41 (125)
T ss_pred cEEEEEEeCCCCCCeEeEEEEEECCEEEEEcCCCC----------------------------------------CCceE
Confidence 58999999999999999999999999999997543 23789
Q ss_pred EEEcCceEEEecCC--CCCcEEEEeCC---------------------eEEEEEcCCHHHHHHHHHHHHHHHHhc
Q 004443 175 EVHLKVSSIRDSKS--DDKRFSIFTGT---------------------KRLHLRAETREDRFAWMEALQAVKDMF 226 (753)
Q Consensus 175 ~I~L~~ssi~~~~~--d~~rF~I~t~t---------------------kt~~LrAeS~edr~~WI~AL~~a~~~~ 226 (753)
.|+|..+.|..... ....|.|.+++ ++|+|+|+|.+|+++||.||+.++..-
T Consensus 42 ~I~L~~~~v~~~~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~ 116 (125)
T cd01252 42 IIPLENVSIREVEDPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPN 116 (125)
T ss_pred EEECCCcEEEEcccCCCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence 99999888776533 34457776644 689999999999999999999998753
No 18
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.67 E-value=2.3e-16 Score=145.25 Aligned_cols=87 Identities=30% Similarity=0.379 Sum_probs=70.2
Q ss_pred EEEEEeecCCC----CCceeeEEEEeCCe-------EEEEeecCCCccccchhccccceeeccchhhhhhhccccccccc
Q 004443 96 SGVLYKWVNYG----KGWRPRWFVLQDGV-------LSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTS 164 (753)
Q Consensus 96 eG~L~K~~n~~----kgWk~RWFVL~~g~-------LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~ 164 (753)
+|||.|++... +.||+|||||+++. |+||+.+.+
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~----------------------------------- 46 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRK----------------------------------- 46 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCC-----------------------------------
Confidence 79999998854 49999999998865 699997543
Q ss_pred ccccCCCcccEEEcCceEEEecC----CCCC----cEEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 004443 165 QRLLNRKPFGEVHLKVSSIRDSK----SDDK----RFSIFTGTKRLHLRAETREDRFAWMEALQAV 222 (753)
Q Consensus 165 ~~~~~~kp~G~I~L~~ssi~~~~----~d~~----rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a 222 (753)
.+|.|.|+|..+.+.... ..+. .|.|.++.|+|+|.|+|++|+++||.||+..
T Consensus 47 -----~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 47 -----FKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred -----CccceEEECCccEEEcccccccccCcccceEEEEEeCCccEEEEECCHHHHHHHHHHHHhh
Confidence 358999999988754331 1122 3889999999999999999999999999753
No 19
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.67 E-value=4.6e-16 Score=142.07 Aligned_cols=90 Identities=23% Similarity=0.317 Sum_probs=72.4
Q ss_pred ccEEEEEEeecCCCCCceeeEEEEeCC------eEEEEeecCCCccccchhccccceeeccchhhhhhhccccccccccc
Q 004443 93 NGISGVLYKWVNYGKGWRPRWFVLQDG------VLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQR 166 (753)
Q Consensus 93 ~~~eG~L~K~~n~~kgWk~RWFVL~~g------~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~ 166 (753)
..++|||.|+ |.||+|||||+++ .|.||+++..-.
T Consensus 2 v~k~GyL~K~----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~----------------------------------- 42 (101)
T cd01257 2 VRKSGYLRKQ----KSMHKRFFVLRAESSGGPARLEYYENEKKFL----------------------------------- 42 (101)
T ss_pred ccEEEEEeEe----cCcEeEEEEEecCCCCCCceEEEECChhhcc-----------------------------------
Confidence 4579999998 8899999999877 899999865310
Q ss_pred ccCCCcccEEEcCceEEEecCCC---CCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHH
Q 004443 167 LLNRKPFGEVHLKVSSIRDSKSD---DKRFSIFTGTKRLHLRAETREDRFAWMEALQA 221 (753)
Q Consensus 167 ~~~~kp~G~I~L~~ssi~~~~~d---~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~ 221 (753)
.+..+|+|.|+|..|.......+ ...|.|.|+.|+|.|.|+|++|+++||++|..
T Consensus 43 ~~~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 43 QKGSAPKRVIPLESCFNINKRADAKHRHLIALYTRDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred ccCCCceEEEEccceEEEeeccccccCeEEEEEeCCceEEEEeCCHHHHHHHHHHHhh
Confidence 01245999999999974433333 34688999999999999999999999999964
No 20
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.65 E-value=9e-16 Score=135.42 Aligned_cols=90 Identities=30% Similarity=0.585 Sum_probs=74.4
Q ss_pred EEEEEEeecCC-CCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCcc
Q 004443 95 ISGVLYKWVNY-GKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPF 173 (753)
Q Consensus 95 ~eG~L~K~~n~-~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~ 173 (753)
++|||.|++.. .++|++|||||+++.|+||+.+... ...+.
T Consensus 1 k~G~L~kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~~--------------------------------------~~~~~ 42 (94)
T cd01250 1 KQGYLYKRSSKSNKEWKKRWFVLKNGQLTYHHRLKDY--------------------------------------DNAHV 42 (94)
T ss_pred CcceEEEECCCcCCCceEEEEEEeCCeEEEEcCCccc--------------------------------------ccccc
Confidence 58999999865 7889999999999999999975431 11267
Q ss_pred cEEEcCceEEEecCCC---CCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 004443 174 GEVHLKVSSIRDSKSD---DKRFSIFTGTKRLHLRAETREDRFAWMEALQAV 222 (753)
Q Consensus 174 G~I~L~~ssi~~~~~d---~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a 222 (753)
+.|+|..++|...... ...|.|.+++++|+|+|+|++|+++||.||+.+
T Consensus 43 ~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~f~a~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 43 KEIDLRRCTVRHNGKQPDRRFCFEVISPTKTWHFQADSEEERDDWISAIQES 94 (94)
T ss_pred eEEeccceEEecCccccCCceEEEEEcCCcEEEEECCCHHHHHHHHHHHhcC
Confidence 8899998877655443 457889999999999999999999999999864
No 21
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.62 E-value=2.5e-15 Score=137.17 Aligned_cols=92 Identities=28% Similarity=0.441 Sum_probs=65.9
Q ss_pred cEEEEEEeecCCCCCceeeEEEEe-CCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCc
Q 004443 94 GISGVLYKWVNYGKGWRPRWFVLQ-DGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKP 172 (753)
Q Consensus 94 ~~eG~L~K~~n~~kgWk~RWFVL~-~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp 172 (753)
.++|||.|+++..+.||+|||||+ ++.|.||+.+..+. .....+
T Consensus 2 ~k~G~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~-----------------------------------~~~~i~ 46 (102)
T cd01241 2 VKEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDG-----------------------------------DPFLPP 46 (102)
T ss_pred cEEEEEEeecCCCCCCeeEEEEEeCCCeEEEEecCCCcc-----------------------------------Cccccc
Confidence 479999999999999999999998 89999999754311 000113
Q ss_pred ccEEEcCceEEEe-cCCCCCcEEEE------eCCeEEEEEcCCHHHHHHHHHHHHHH
Q 004443 173 FGEVHLKVSSIRD-SKSDDKRFSIF------TGTKRLHLRAETREDRFAWMEALQAV 222 (753)
Q Consensus 173 ~G~I~L~~ssi~~-~~~d~~rF~I~------t~tkt~~LrAeS~edr~~WI~AL~~a 222 (753)
.+.+.+..|++.. +......|.|. +..|+| .|+|++||++||+||+.+
T Consensus 47 l~~~~v~~~~~~~~~~~~~~~F~i~~~~~~~~~~r~f--~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 47 LNNFSVAECQLMKTERPRPNTFIIRCLQWTTVIERTF--HVESPEEREEWIHAIQTV 101 (102)
T ss_pred cCCeEEeeeeeeeccCCCcceEEEEeccCCcccCEEE--EeCCHHHHHHHHHHHHhh
Confidence 3444555555432 22335679987 235555 589999999999999986
No 22
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.57 E-value=3.4e-14 Score=125.02 Aligned_cols=93 Identities=32% Similarity=0.496 Sum_probs=79.2
Q ss_pred cEEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCcc
Q 004443 94 GISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPF 173 (753)
Q Consensus 94 ~~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~ 173 (753)
.++|||.|++...++|++|||||.++.|+||+..... ....|.
T Consensus 2 ~~~G~L~~~~~~~~~wk~r~~vL~~~~L~~~~~~~~~-------------------------------------~~~~~~ 44 (104)
T PF00169_consen 2 IKEGWLLKKSSSRKKWKKRYFVLRDSYLLYYKSSKDK-------------------------------------SDSKPK 44 (104)
T ss_dssp EEEEEEEEEESSSSSEEEEEEEEETTEEEEESSTTTT-------------------------------------TESSES
T ss_pred EEEEEEEEECCCCCCeEEEEEEEECCEEEEEecCccc-------------------------------------cceeee
Confidence 5799999999889999999999999999999986530 123488
Q ss_pred cEEEcCceEEEecCC--------CCCcEEEEeCCe-EEEEEcCCHHHHHHHHHHHHHHH
Q 004443 174 GEVHLKVSSIRDSKS--------DDKRFSIFTGTK-RLHLRAETREDRFAWMEALQAVK 223 (753)
Q Consensus 174 G~I~L~~ssi~~~~~--------d~~rF~I~t~tk-t~~LrAeS~edr~~WI~AL~~a~ 223 (753)
+.|+|..+.|..... ....|.|.++.+ +|+|+|+|++++.+||++|+.|.
T Consensus 45 ~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 45 GSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEecCceEEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 999999998876543 356789998875 99999999999999999999985
No 23
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.57 E-value=6.6e-15 Score=133.68 Aligned_cols=85 Identities=25% Similarity=0.316 Sum_probs=73.2
Q ss_pred EEEEEeecCC-CCCceeeEEEEeC----CeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCC
Q 004443 96 SGVLYKWVNY-GKGWRPRWFVLQD----GVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNR 170 (753)
Q Consensus 96 eG~L~K~~n~-~kgWk~RWFVL~~----g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~ 170 (753)
.|||.|+|+. .|.||+|||+|.+ +.|+||+.+.+ .
T Consensus 2 ~G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~----------------------------------------~ 41 (98)
T cd01245 2 KGNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKK----------------------------------------T 41 (98)
T ss_pred CCccccCCCCcccccceeEEEEecCCCCceEEEEcCCCC----------------------------------------C
Confidence 5999999987 9999999999976 99999998664 2
Q ss_pred CcccEEEcCceEEEecCCC----CCcEEEEeCCe--EEEEEcCCHHHHHHHHHHHHH
Q 004443 171 KPFGEVHLKVSSIRDSKSD----DKRFSIFTGTK--RLHLRAETREDRFAWMEALQA 221 (753)
Q Consensus 171 kp~G~I~L~~ssi~~~~~d----~~rF~I~t~tk--t~~LrAeS~edr~~WI~AL~~ 221 (753)
+|.|.|+|..+.|+...+. +..|.|.++.+ +|+++|++ +||++||++|+.
T Consensus 42 ~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 42 KPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERALPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred CccceeeccccEEEEccccccCCCeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence 4889999999988875432 46788998876 99999999 999999999986
No 24
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.55 E-value=2.1e-14 Score=130.47 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=67.0
Q ss_pred EEEEeec----CCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCc
Q 004443 97 GVLYKWV----NYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKP 172 (753)
Q Consensus 97 G~L~K~~----n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp 172 (753)
|.|.|+. ...+.||+|||+|.+..|+||+.+. .+|
T Consensus 5 ~~~~kr~~~~~~~~~n~KkRwF~Lt~~~L~Y~k~~~-----------------------------------------~~~ 43 (98)
T cd01244 5 LQQVDRSRLAWKKVLHFKKRYFQLTTTHLSWAKDVQ-----------------------------------------CKK 43 (98)
T ss_pred cEEEEcccCCCccCcCCceeEEEECCCEEEEECCCC-----------------------------------------Cce
Confidence 5566664 2347899999999999999999643 247
Q ss_pred ccEEEcCceEEEecCC-----CCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 004443 173 FGEVHLKVSSIRDSKS-----DDKRFSIFTGTKRLHLRAETREDRFAWMEALQAV 222 (753)
Q Consensus 173 ~G~I~L~~ssi~~~~~-----d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a 222 (753)
+|.|+|......+... ....|.|+++.|+|+|+|+|++||++||.||+.+
T Consensus 44 ~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~a~s~~E~~~Wi~al~k~ 98 (98)
T cd01244 44 SALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQFEAPVEATDWLNALEKQ 98 (98)
T ss_pred eeeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEEECCCHHHHHHHHHHHhcC
Confidence 8999998765433221 1357899999999999999999999999999864
No 25
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.50 E-value=1.8e-13 Score=124.77 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=79.7
Q ss_pred cEEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCcc
Q 004443 94 GISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPF 173 (753)
Q Consensus 94 ~~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~ 173 (753)
.++|||.|.+...++||+|||.|-+++|-|++.+... .....+++
T Consensus 3 ikeG~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~-----------------------------------~~~~y~~~ 47 (101)
T cd01219 3 LKEGSVLKISSTTEKTEERYLFLFNDLLLYCVPRKMI-----------------------------------GGSKFKVR 47 (101)
T ss_pred ccceEEEEEecCCCCceeEEEEEeCCEEEEEEccccc-----------------------------------CCCcEEEE
Confidence 5799999999999999999999988899999964210 01123468
Q ss_pred cEEEcCceEEEecCC--CCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 004443 174 GEVHLKVSSIRDSKS--DDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKD 224 (753)
Q Consensus 174 G~I~L~~ssi~~~~~--d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~ 224 (753)
+.|+|....|....+ ..+.|.|.+.+|+|+|.|+|++||.+||+||+.|++
T Consensus 48 ~~i~l~~~~v~~~~~~~~~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 48 ARIDVSGMQVCEGDNLERPHSFLVSGKQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred EEEecccEEEEeCCCCCcCceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 899999988876532 367899999999999999999999999999999975
No 26
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.42 E-value=6.8e-13 Score=125.09 Aligned_cols=92 Identities=22% Similarity=0.436 Sum_probs=69.7
Q ss_pred cEEEEEEe-e-cCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCC
Q 004443 94 GISGVLYK-W-VNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRK 171 (753)
Q Consensus 94 ~~eG~L~K-~-~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~k 171 (753)
...|||.- + ++..|.|++|||||+++.|+||+.+.+. ....
T Consensus 2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~-------------------------------------~~~~ 44 (122)
T cd01263 2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDE-------------------------------------KRKG 44 (122)
T ss_pred ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCcc-------------------------------------ccCC
Confidence 35799984 3 6788999999999999999999976541 1234
Q ss_pred cccEEEcCceEEEec-------CCCCCcEEEEe--CC-----------------eE-EEEEcCCHHHHHHHHHHHHHH
Q 004443 172 PFGEVHLKVSSIRDS-------KSDDKRFSIFT--GT-----------------KR-LHLRAETREDRFAWMEALQAV 222 (753)
Q Consensus 172 p~G~I~L~~ssi~~~-------~~d~~rF~I~t--~t-----------------kt-~~LrAeS~edr~~WI~AL~~a 222 (753)
|.|.|+|..|.+... ....+.|.|.+ ++ |+ +.|.|+|++||++||.||+.|
T Consensus 45 Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 45 PTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred ceEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 899999998876443 22355687743 22 34 558999999999999999864
No 27
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=6e-13 Score=137.88 Aligned_cols=97 Identities=26% Similarity=0.483 Sum_probs=79.2
Q ss_pred CccEEEEEEeecC-CCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCC
Q 004443 92 GNGISGVLYKWVN-YGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNR 170 (753)
Q Consensus 92 ~~~~eG~L~K~~n-~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~ 170 (753)
.+.++|||.|.++ ..|.||+|||+|.+++||||.-..+ .
T Consensus 259 npdREGWLlKlgg~rvktWKrRWFiLtdNCLYYFe~tTD----------------------------------------K 298 (395)
T KOG0930|consen 259 NPDREGWLLKLGGNRVKTWKRRWFILTDNCLYYFEYTTD----------------------------------------K 298 (395)
T ss_pred CccccceeeeecCCcccchhheeEEeecceeeeeeeccC----------------------------------------C
Confidence 5789999999975 7899999999999999999997544 2
Q ss_pred CcccEEEcCceEEEecCCC--CCcEEEEeC----------------------CeEEEEEcCCHHHHHHHHHHHHHHHHhc
Q 004443 171 KPFGEVHLKVSSIRDSKSD--DKRFSIFTG----------------------TKRLHLRAETREDRFAWMEALQAVKDMF 226 (753)
Q Consensus 171 kp~G~I~L~~ssi~~~~~d--~~rF~I~t~----------------------tkt~~LrAeS~edr~~WI~AL~~a~~~~ 226 (753)
.|+|.|.|..-+|+..... +..|.|+.+ .-.|.++|.|.+|+.+||++|+++++.-
T Consensus 299 EPrGIIpLeNlsir~VedP~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~ 378 (395)
T KOG0930|consen 299 EPRGIIPLENLSIREVEDPKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRD 378 (395)
T ss_pred CCCcceeccccceeeccCCCCCCeEEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccC
Confidence 3899999999998876544 445655532 1369999999999999999999998865
Q ss_pred cc
Q 004443 227 PR 228 (753)
Q Consensus 227 ~~ 228 (753)
|.
T Consensus 379 Pf 380 (395)
T KOG0930|consen 379 PF 380 (395)
T ss_pred cH
Confidence 53
No 28
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.40 E-value=1.2e-12 Score=119.87 Aligned_cols=80 Identities=26% Similarity=0.570 Sum_probs=64.2
Q ss_pred CCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCcccEEEcCceEEEe
Q 004443 106 GKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPFGEVHLKVSSIRD 185 (753)
Q Consensus 106 ~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~G~I~L~~ssi~~ 185 (753)
.|+||+|||+|+++.|+|||++.+. ...|.+.|+|++|.|..
T Consensus 17 ~K~~KrrwF~lk~~~L~YyK~kee~--------------------------------------~~~p~i~lnl~gcev~~ 58 (106)
T cd01237 17 LKGYKQYWFTFRDTSISYYKSKEDS--------------------------------------NGAPIGQLNLKGCEVTP 58 (106)
T ss_pred hhhheeEEEEEeCCEEEEEccchhc--------------------------------------CCCCeEEEecCceEEcc
Confidence 6889999999999999999986541 12377889999999876
Q ss_pred cCC-CCCcEE--EEeCC----eEEEEEcCCHHHHHHHHHHHHHHH
Q 004443 186 SKS-DDKRFS--IFTGT----KRLHLRAETREDRFAWMEALQAVK 223 (753)
Q Consensus 186 ~~~-d~~rF~--I~t~t----kt~~LrAeS~edr~~WI~AL~~a~ 223 (753)
+.. ....|. +.++. |+|+|+|+|++++++||+|++.|.
T Consensus 59 dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rlas 103 (106)
T cd01237 59 DVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRLAS 103 (106)
T ss_pred cccccccceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHHhh
Confidence 642 133465 45555 999999999999999999999874
No 29
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.36 E-value=9.8e-12 Score=107.24 Aligned_cols=93 Identities=32% Similarity=0.537 Sum_probs=77.6
Q ss_pred cEEEEEEeecC-CCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCc
Q 004443 94 GISGVLYKWVN-YGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKP 172 (753)
Q Consensus 94 ~~eG~L~K~~n-~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp 172 (753)
.++|||.++.. ....|++|||+|.++.|.||+..... ....+
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~-------------------------------------~~~~~ 44 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKAK-------------------------------------KDYKP 44 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCcc-------------------------------------ccCCC
Confidence 57999999987 66789999999999999999975431 01236
Q ss_pred ccEEEcCceEEEecCC-----CCCcEEEEeCCe-EEEEEcCCHHHHHHHHHHHHHHH
Q 004443 173 FGEVHLKVSSIRDSKS-----DDKRFSIFTGTK-RLHLRAETREDRFAWMEALQAVK 223 (753)
Q Consensus 173 ~G~I~L~~ssi~~~~~-----d~~rF~I~t~tk-t~~LrAeS~edr~~WI~AL~~a~ 223 (753)
.+.|+|..+.+..... .+..|.|.++++ +|+|+|+|++|+..|+.+|+.+.
T Consensus 45 ~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 45 KGSIDLSGITVREAPDPDSAKKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ceEEECCcCEEEeCCCCccCCCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 8899999988776654 367788988887 99999999999999999999875
No 30
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.33 E-value=5.8e-12 Score=118.67 Aligned_cols=88 Identities=16% Similarity=0.417 Sum_probs=64.5
Q ss_pred EEEEEEeecCC-----C-------------CCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhc
Q 004443 95 ISGVLYKWVNY-----G-------------KGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKR 156 (753)
Q Consensus 95 ~eG~L~K~~n~-----~-------------kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~ 156 (753)
+|||++|+++. . ..|++|||||+++.|.||+...+.
T Consensus 1 keG~i~kr~g~~~~~~~~~~~~~~~~~~~~~~w~kRWFvlr~s~L~Y~~~~~~~-------------------------- 54 (121)
T cd01254 1 KEGYIMKRSGGKRSGSDDCSFGCCCFCRMCDRWQKRWFIVKESFLAYMDDPSSA-------------------------- 54 (121)
T ss_pred CCceEEeCCCCCcCCcccccccccCCcccccCCcceeEEEeCCEEEEEcCCCCC--------------------------
Confidence 47899888532 1 159999999999999999975541
Q ss_pred ccccccccccccCCCcccEEEcCce-EEEec--------------CCCCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHH
Q 004443 157 KHKKETTSQRLLNRKPFGEVHLKVS-SIRDS--------------KSDDKRFSIFTGTKRLHLRAETREDRFAWMEALQA 221 (753)
Q Consensus 157 ~~~~~~~~~~~~~~kp~G~I~L~~s-si~~~--------------~~d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~ 221 (753)
+|.|+|.|... .|... ......|.|.+++|+|.|.|+|+.++++||++|+.
T Consensus 55 --------------~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~ 120 (121)
T cd01254 55 --------------QILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIED 120 (121)
T ss_pred --------------ceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 24555555321 12211 12245688999999999999999999999999997
Q ss_pred H
Q 004443 222 V 222 (753)
Q Consensus 222 a 222 (753)
|
T Consensus 121 a 121 (121)
T cd01254 121 A 121 (121)
T ss_pred C
Confidence 5
No 31
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.25 E-value=4.2e-11 Score=109.01 Aligned_cols=90 Identities=21% Similarity=0.321 Sum_probs=65.4
Q ss_pred EEEEEE-eec-------CCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhccccccccccc
Q 004443 95 ISGVLY-KWV-------NYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQR 166 (753)
Q Consensus 95 ~eG~L~-K~~-------n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~ 166 (753)
++|+|. |.. ...+.|++|||||+++.|+||+.+....
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~----------------------------------- 45 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAA----------------------------------- 45 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccc-----------------------------------
Confidence 478888 332 1356799999999999999999754310
Q ss_pred ccCCCccc--EEEcCceEEEecCC---CCCcEEEEe-CCeEEEEEcCCHHHHHHHHHHHHHH
Q 004443 167 LLNRKPFG--EVHLKVSSIRDSKS---DDKRFSIFT-GTKRLHLRAETREDRFAWMEALQAV 222 (753)
Q Consensus 167 ~~~~kp~G--~I~L~~ssi~~~~~---d~~rF~I~t-~tkt~~LrAeS~edr~~WI~AL~~a 222 (753)
....| .|+|..+.|....+ .+..|.|.+ ++++|.|+|+|.+|+++||.||+++
T Consensus 46 ---~~~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 46 ---ENVHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred ---cCCCCCCcEeccCCEEEecCCcccCceEEEEEecCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 00122 67777666655433 246788854 5699999999999999999999864
No 32
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.21 E-value=1.3e-10 Score=106.02 Aligned_cols=93 Identities=20% Similarity=0.267 Sum_probs=69.5
Q ss_pred cEEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCcc
Q 004443 94 GISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPF 173 (753)
Q Consensus 94 ~~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~ 173 (753)
+++|+|.|.+.. +.|+|+||.+.|-.||+.+...+. ..-+++
T Consensus 3 ikEG~L~K~~~k-~~~~R~~FLFnD~LlY~~~~~~~~-------------------------------------~~y~~~ 44 (99)
T cd01220 3 IRQGCLLKLSKK-GLQQRMFFLFSDLLLYTSKSPTDQ-------------------------------------NSFRIL 44 (99)
T ss_pred eeEEEEEEEeCC-CCceEEEEEccceEEEEEeecCCC-------------------------------------ceEEEE
Confidence 579999998753 346666666666555544432210 012368
Q ss_pred cEEEcCceEEEecCCC---CCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 004443 174 GEVHLKVSSIRDSKSD---DKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKD 224 (753)
Q Consensus 174 G~I~L~~ssi~~~~~d---~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~ 224 (753)
|.|+|....|.....+ .+.|.|.++.|.|.|.|.|++|+++||++|+.|++
T Consensus 45 ~~i~L~~~~V~~~~~~~~~~~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 45 GHLPLRGMLTEESEHEWGVPHCFTIFGGQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred EEEEcCceEEeeccCCcCCceeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 9999999988765542 57899999999999999999999999999999975
No 33
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.19 E-value=9.2e-11 Score=100.26 Aligned_cols=91 Identities=37% Similarity=0.625 Sum_probs=75.2
Q ss_pred EEEEEEeecCCC-CCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCcc
Q 004443 95 ISGVLYKWVNYG-KGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPF 173 (753)
Q Consensus 95 ~eG~L~K~~n~~-kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~ 173 (753)
++|||.++.... ..|++|||+|.++.|.||+..... ....+.
T Consensus 1 ~~G~l~~~~~~~~~~w~~~~~~L~~~~l~~~~~~~~~-------------------------------------~~~~~~ 43 (96)
T cd00821 1 KEGYLLKKTGKLRKGWKRRWFVLFNDLLLYYKKKSSK-------------------------------------KSYKPK 43 (96)
T ss_pred CcchhhhhhChhhCCccEEEEEEECCEEEEEECCCCC-------------------------------------cCCCCc
Confidence 379999987665 789999999999999999875431 013478
Q ss_pred cEEEcCceEEEecCCC---CCcEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHH
Q 004443 174 GEVHLKVSSIRDSKSD---DKRFSIFTGT-KRLHLRAETREDRFAWMEALQAV 222 (753)
Q Consensus 174 G~I~L~~ssi~~~~~d---~~rF~I~t~t-kt~~LrAeS~edr~~WI~AL~~a 222 (753)
+.|+|..+.|...... ...|.|.+.. +.|+|+|+|++|+..|+.+|+.+
T Consensus 44 ~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 44 GSIPLSGAEVEESPDDSGRKNCFEIRTPDGRSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred ceEEcCCCEEEECCCcCCCCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhcC
Confidence 9999999888776654 6789998877 99999999999999999999864
No 34
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.17 E-value=6.8e-11 Score=130.10 Aligned_cols=94 Identities=35% Similarity=0.587 Sum_probs=85.2
Q ss_pred ccEEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCc
Q 004443 93 NGISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKP 172 (753)
Q Consensus 93 ~~~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp 172 (753)
..+.|+|.||+||+.||+.|||||.+|.|+||++.... .++ +
T Consensus 24 ~e~~G~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~------------------------------------~hG--c 65 (611)
T KOG1739|consen 24 VERCGVLSKWTNYIHGWQDRYVVLKNGALSYYKSEDET------------------------------------EHG--C 65 (611)
T ss_pred hhhcceeeeeecccccccceEEEEcccchhhhhhhhhh------------------------------------hcc--c
Confidence 44689999999999999999999999999999986531 122 5
Q ss_pred ccEEEcCceEEEecCCCCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 004443 173 FGEVHLKVSSIRDSKSDDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKD 224 (753)
Q Consensus 173 ~G~I~L~~ssi~~~~~d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~ 224 (753)
+|.|.|+.+.|..+..|.++|.|.++.-.++|+|.+...++.|+++|+--+.
T Consensus 66 Rgsi~l~ka~i~ahEfDe~rfdIsvn~nv~~lra~~~~hr~~w~d~L~wmk~ 117 (611)
T KOG1739|consen 66 RGSICLSKAVITAHEFDECRFDISVNDNVWYLRAQDPDHRQQWIDALEWMKT 117 (611)
T ss_pred ceeeEeccCCcccccchhheeeeEeccceeeehhcCcHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999999999999998876
No 35
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=99.06 E-value=5.5e-11 Score=138.38 Aligned_cols=94 Identities=31% Similarity=0.462 Sum_probs=76.0
Q ss_pred CCCccEEEEEEeecCCCCCceeeEEEE--eCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccc
Q 004443 90 IVGNGISGVLYKWVNYGKGWRPRWFVL--QDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRL 167 (753)
Q Consensus 90 ~~~~~~eG~L~K~~n~~kgWk~RWFVL--~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~ 167 (753)
..+.+-+|||||+|...|+|++||||| ....|+||....+
T Consensus 1631 teNr~~eG~LyKrGA~lK~Wk~RwFVLd~~khqlrYYd~~ed-------------------------------------- 1672 (1732)
T KOG1090|consen 1631 TENRIPEGYLYKRGAKLKLWKPRWFVLDPDKHQLRYYDDFED-------------------------------------- 1672 (1732)
T ss_pred ccccCcccchhhcchhhcccccceeEecCCccceeeeccccc--------------------------------------
Confidence 344555999999999999999999999 4589999997443
Q ss_pred cCCCcccEEEcCc-eE---EEecCCCCCc-EEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 004443 168 LNRKPFGEVHLKV-SS---IRDSKSDDKR-FSIFTGTKRLHLRAETREDRFAWMEALQAVK 223 (753)
Q Consensus 168 ~~~kp~G~I~L~~-ss---i~~~~~d~~r-F~I~t~tkt~~LrAeS~edr~~WI~AL~~a~ 223 (753)
.+|+|+|+|.. -+ |.....|.+. |.+.|..|+|.|.|.+....++|++.||++.
T Consensus 1673 --t~pkG~IdLaevesv~~~~~k~vdekgffdlktt~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1673 --TKPKGCIDLAEVESVALIGPKTVDEKGFFDLKTTNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred --ccccchhhhhhhhhhcccCccccCccceeeeehhhHHHHHHhccchHHHHHHHHHHHhh
Confidence 35899999963 22 3334455554 5799999999999999999999999999875
No 36
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=99.05 E-value=2e-09 Score=92.65 Aligned_cols=87 Identities=31% Similarity=0.528 Sum_probs=70.3
Q ss_pred EEEEEeecCCC----CCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCC
Q 004443 96 SGVLYKWVNYG----KGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRK 171 (753)
Q Consensus 96 eG~L~K~~n~~----kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~k 171 (753)
+|||.+++... +.|++|||+|.++.|.||+.+....
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~---------------------------------------- 41 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKE---------------------------------------- 41 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCc----------------------------------------
Confidence 69999987664 7899999999999999999855311
Q ss_pred cc-cEEEcCceEEEecCC---CCCcEEEEeC---CeEEEEEcCCHHHHHHHHHHHHHH
Q 004443 172 PF-GEVHLKVSSIRDSKS---DDKRFSIFTG---TKRLHLRAETREDRFAWMEALQAV 222 (753)
Q Consensus 172 p~-G~I~L~~ssi~~~~~---d~~rF~I~t~---tkt~~LrAeS~edr~~WI~AL~~a 222 (753)
+. +.+.|....+..... .+..|.|.+. .+.|.|+|+|.+|++.|+.||+.|
T Consensus 42 ~~~~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 42 IKPGSIPLSEISVEEDPDGSDDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred CCCCEEEccceEEEECCCCCCCCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 12 567777766665543 3678999887 899999999999999999999864
No 37
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.94 E-value=6.8e-09 Score=97.48 Aligned_cols=100 Identities=13% Similarity=0.218 Sum_probs=71.7
Q ss_pred EEEEEEee---------cCC-CCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhccccccccc
Q 004443 95 ISGVLYKW---------VNY-GKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTS 164 (753)
Q Consensus 95 ~eG~L~K~---------~n~-~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~ 164 (753)
++|+|..+ ... .+.|++||.||+++.|+.||.+.......
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~------------------------------ 51 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSL------------------------------ 51 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCccccccc------------------------------
Confidence 46888653 111 35799999999999999999865311000
Q ss_pred ccccCCCcccEEEcCceEEEecCCC---CCcEEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHHhcc
Q 004443 165 QRLLNRKPFGEVHLKVSSIRDSKSD---DKRFSIFTG-TKRLHLRAETREDRFAWMEALQAVKDMFP 227 (753)
Q Consensus 165 ~~~~~~kp~G~I~L~~ssi~~~~~d---~~rF~I~t~-tkt~~LrAeS~edr~~WI~AL~~a~~~~~ 227 (753)
........|.|..+++....+. +..|.|.++ ++.|.|+|.+.+|++.||.+|+.|.+.+.
T Consensus 52 ---~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~~s 115 (117)
T cd01230 52 ---SETELKNAISIHHALATRASDYSKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAAFS 115 (117)
T ss_pred ---ccccccceEEeccceeEeeccccCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhcc
Confidence 0011345677877764433332 567889887 59999999999999999999999998764
No 38
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.94 E-value=6.9e-10 Score=118.42 Aligned_cols=102 Identities=25% Similarity=0.417 Sum_probs=74.5
Q ss_pred CCCccEEEEEEeecCCCCCceeeEEEE-eCCeEEEEeecCCCccccchhccccceeeccchhhhhhhccccccccccccc
Q 004443 90 IVGNGISGVLYKWVNYGKGWRPRWFVL-QDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLL 168 (753)
Q Consensus 90 ~~~~~~eG~L~K~~n~~kgWk~RWFVL-~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~ 168 (753)
.+...++|||+|+|.++|.||+|||+| .||.|-=|+++..+. +.
T Consensus 12 ~~~vvkEgWlhKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~-----------------------------------~~ 56 (516)
T KOG0690|consen 12 QEDVVKEGWLHKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEV-----------------------------------QP 56 (516)
T ss_pred hhhhHHhhhHhhcchhhhcccceEEEEeeCCceEeeccCCccC-----------------------------------CC
Confidence 455678999999999999999999999 789999999865421 11
Q ss_pred CCCcccEEEcCceE-EEecCCCCCcEEEEeC------CeEEEEEcCCHHHHHHHHHHHHHHHHhccc
Q 004443 169 NRKPFGEVHLKVSS-IRDSKSDDKRFSIFTG------TKRLHLRAETREDRFAWMEALQAVKDMFPR 228 (753)
Q Consensus 169 ~~kp~G~I~L~~ss-i~~~~~d~~rF~I~t~------tkt~~LrAeS~edr~~WI~AL~~a~~~~~~ 228 (753)
...|.....++.|. ....+..++.|.|.+- .|||| ++|+++|++|++|||++....++
T Consensus 57 ~p~pLNnF~v~~cq~m~~erPrPntFiiRcLQWTTVIERTF~--ves~~eRq~W~~AIq~vsn~l~q 121 (516)
T KOG0690|consen 57 TPEPLNNFMVRDCQTMKTERPRPNTFIIRCLQWTTVIERTFY--VESAEERQEWIEAIQAVSNRLKQ 121 (516)
T ss_pred CcccccchhhhhhhhhhccCCCCceEEEEeeeeeeeeeeeee--cCCHHHHHHHHHHHHHHhhhhhh
Confidence 11244444454443 3334555788888662 36655 59999999999999999876655
No 39
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.79 E-value=2.8e-08 Score=91.45 Aligned_cols=92 Identities=22% Similarity=0.172 Sum_probs=68.3
Q ss_pred CCCccEEEEEEeecCCCCCceeeEEEEeCC-eEEEEeecCCCccccchhccccceeeccchhhhhhhccccccccccccc
Q 004443 90 IVGNGISGVLYKWVNYGKGWRPRWFVLQDG-VLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLL 168 (753)
Q Consensus 90 ~~~~~~eG~L~K~~n~~kgWk~RWFVL~~g-~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~ 168 (753)
.....++|++.|+.+.+ +|+|||+|.++ -|.|++....
T Consensus 10 ge~Il~~g~v~K~kgl~--~kkR~liLTd~PrL~Yvdp~~~--------------------------------------- 48 (104)
T PF14593_consen 10 GELILKQGYVKKRKGLF--AKKRQLILTDGPRLFYVDPKKM--------------------------------------- 48 (104)
T ss_dssp T--EEEEEEEEEEETTE--EEEEEEEEETTTEEEEEETTTT---------------------------------------
T ss_pred CCeEEEEEEEEEeeceE--EEEEEEEEccCCEEEEEECCCC---------------------------------------
Confidence 45577899999998877 99999999887 9999886432
Q ss_pred CCCcccEEEcCceEEEecCCCCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhc
Q 004443 169 NRKPFGEVHLKVSSIRDSKSDDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKDMF 226 (753)
Q Consensus 169 ~~kp~G~I~L~~ssi~~~~~d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~~~ 226 (753)
..+|+|.+..+. .+...+...|.|.|++|+|+|.. ...+...|++||+.++..+
T Consensus 49 --~~KGeI~~~~~l-~v~~k~~~~F~I~tp~RtY~l~d-~~~~A~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 49 --VLKGEIPWSKEL-SVEVKSFKTFFIHTPKRTYYLED-PEGNAQQWVEAIEEVKKQY 102 (104)
T ss_dssp --EEEEEE--STT--EEEECSSSEEEEEETTEEEEEE--TTS-HHHHHHHHHHHHHHH
T ss_pred --eECcEEecCCce-EEEEccCCEEEEECCCcEEEEEC-CCCCHHHHHHHHHHHHHHh
Confidence 146999998543 22234567999999999999987 4566888999999998754
No 40
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.74 E-value=1e-07 Score=87.86 Aligned_cols=94 Identities=22% Similarity=0.206 Sum_probs=75.3
Q ss_pred cEEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCcc
Q 004443 94 GISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPF 173 (753)
Q Consensus 94 ~~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~ 173 (753)
+.+|.|.|-. .|+-+.|+|.|=+++|-|-+.--. .+.-+..
T Consensus 5 i~eG~L~K~~--rk~~~~R~ffLFnD~LvY~~~~~~-------------------------------------~~~~~~~ 45 (104)
T cd01218 5 VGEGVLTKMC--RKKPKQRQFFLFNDILVYGNIVIS-------------------------------------KKKYNKQ 45 (104)
T ss_pred EecCcEEEee--cCCCceEEEEEecCEEEEEEeecC-------------------------------------CceeeEe
Confidence 4699999986 678999999998889999653100 0112356
Q ss_pred cEEEcCceEEEecCCC---CCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhc
Q 004443 174 GEVHLKVSSIRDSKSD---DKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKDMF 226 (753)
Q Consensus 174 G~I~L~~ssi~~~~~d---~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~~~ 226 (753)
+.|+|....|....++ .+.|.|.++.|.|.+.|+|++|+.+||++|+.|++..
T Consensus 46 ~~i~L~~~~v~~~~d~~~~~n~f~I~~~~kSf~v~A~s~~eK~eWl~~i~~ai~~~ 101 (104)
T cd01218 46 HILPLEGVQVESIEDDGIERNGWIIKTPTKSFAVYAATETEKREWMLHINKCVTDL 101 (104)
T ss_pred eEEEccceEEEecCCcccccceEEEecCCeEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 8899998887655443 5789999999999999999999999999999999864
No 41
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.65 E-value=1.8e-07 Score=84.30 Aligned_cols=89 Identities=26% Similarity=0.335 Sum_probs=68.9
Q ss_pred cEEEEEEeec-CCC-CCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCC
Q 004443 94 GISGVLYKWV-NYG-KGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRK 171 (753)
Q Consensus 94 ~~eG~L~K~~-n~~-kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~k 171 (753)
++.|||.-.. ..+ .|=|+|||||.+..|+|||...+ ..
T Consensus 2 irkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~ee----------------------------------------KE 41 (110)
T cd01256 2 IRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEE----------------------------------------KE 41 (110)
T ss_pred eeeeeEEeeccceecCCCcceEEEEecceeeeeccccc----------------------------------------cc
Confidence 6789998762 343 45999999999999999997543 22
Q ss_pred cccEEEcCceEEEecCC----CCCcEEEEeC--------CeEEEEEcCCHHHHHHHHHHHHHH
Q 004443 172 PFGEVHLKVSSIRDSKS----DDKRFSIFTG--------TKRLHLRAETREDRFAWMEALQAV 222 (753)
Q Consensus 172 p~G~I~L~~ssi~~~~~----d~~rF~I~t~--------tkt~~LrAeS~edr~~WI~AL~~a 222 (753)
|+|.|.|..-.++...+ ....|.++.+ .|++.|.|+|.+|.+.|...+-.|
T Consensus 42 ~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 42 KKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred ccceeeccccEEEeecccccCCCcEEEEEcCcccccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 78999999888876554 2445667753 478999999999999998776554
No 42
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.60 E-value=1.3e-07 Score=86.78 Aligned_cols=47 Identities=34% Similarity=0.528 Sum_probs=41.7
Q ss_pred EEEcCceEEEecCCCCCcEE--EEeCCe--EEEEEcCCHHHHHHHHHHHHH
Q 004443 175 EVHLKVSSIRDSKSDDKRFS--IFTGTK--RLHLRAETREDRFAWMEALQA 221 (753)
Q Consensus 175 ~I~L~~ssi~~~~~d~~rF~--I~t~tk--t~~LrAeS~edr~~WI~AL~~ 221 (753)
.|.|+.|+++...+.|+||+ |.+.+| ++.|+|+|+.|+..||+|+..
T Consensus 53 ~~~l~sc~~r~~~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~dg 103 (104)
T cd01249 53 TLTLKSCSRRKTESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMDG 103 (104)
T ss_pred EEeeeeccccccCCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhcC
Confidence 57889999999988899987 777777 899999999999999999864
No 43
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.45 E-value=7.8e-08 Score=115.19 Aligned_cols=98 Identities=32% Similarity=0.495 Sum_probs=80.6
Q ss_pred CCccEEEEEEeec-CCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccC
Q 004443 91 VGNGISGVLYKWV-NYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLN 169 (753)
Q Consensus 91 ~~~~~eG~L~K~~-n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~ 169 (753)
-+..+.|+|+|++ +..+.|+||||-.+++.|.|+..-...
T Consensus 272 ~~~~~~~~l~~k~~~~~~tw~r~~f~~q~~~l~~~~r~~~~--------------------------------------- 312 (785)
T KOG0521|consen 272 LGYRMEGYLRKKASNASKTWKRRWFSIQDGQLGYQHRGADA--------------------------------------- 312 (785)
T ss_pred chhhhhhhhhhhcccchhhHHhhhhhhhccccccccccccc---------------------------------------
Confidence 3456789999885 558899999999999999998853220
Q ss_pred CCcccEEEcCceEEEecCCC-CCcE--EEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhccc
Q 004443 170 RKPFGEVHLKVSSIRDSKSD-DKRF--SIFTGTKRLHLRAETREDRFAWMEALQAVKDMFPR 228 (753)
Q Consensus 170 ~kp~G~I~L~~ssi~~~~~d-~~rF--~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~~~~~ 228 (753)
.....++|..|+|+..+.. ++|| .|++++|+|+|+|+|+.|+++||.+|+..+...-.
T Consensus 313 -~~~~~~dL~~csvk~~~~~~drr~CF~iiS~tks~~lQAes~~d~~~Wi~~i~nsi~s~l~ 373 (785)
T KOG0521|consen 313 -ENVLIEDLRTCSVKPDAEQRDRRFCFEIISPTKSYLLQAESEKDCQDWISALQNSILSALN 373 (785)
T ss_pred -cccccccchhccccCCcccccceeeEEEecCCcceEEecCchhHHHHHHHHHHHHHHHHHh
Confidence 0156789999999988876 6654 59999999999999999999999999999887554
No 44
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.42 E-value=4e-07 Score=82.76 Aligned_cols=89 Identities=19% Similarity=0.361 Sum_probs=61.2
Q ss_pred EEEEEEeecC-CCCCceeeEEEEeCC-----eEEEEeecCCCccccchhccccceeeccchhhhhhhccccccccccccc
Q 004443 95 ISGVLYKWVN-YGKGWRPRWFVLQDG-----VLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLL 168 (753)
Q Consensus 95 ~eG~L~K~~n-~~kgWk~RWFVL~~g-----~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~ 168 (753)
.+|||+|.|. ..|.||+|||||.+- .|+=|+. +
T Consensus 4 ~sGyL~k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~e-----------------------------------------k 42 (117)
T cd01234 4 HCGYLYAIGKNVWKKWKKRFFVLVQVSQYTFAMCSYRE-----------------------------------------K 42 (117)
T ss_pred eeEEEEeccchhhhhhheeEEEEEchhHHHHHHHhhhh-----------------------------------------h
Confidence 6899999987 889999999999831 1222232 2
Q ss_pred CCCcccEEEcCceEEEecCCC-------------CCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 004443 169 NRKPFGEVHLKVSSIRDSKSD-------------DKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKD 224 (753)
Q Consensus 169 ~~kp~G~I~L~~ssi~~~~~d-------------~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~ 224 (753)
...|.-.|.|.+-+|.-.... ...|..+-.+.+..+..+++.||.-||+||-.|..
T Consensus 43 ks~P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff~avkegd~~~fa~~de~~r~lwvqa~yratg 111 (117)
T cd01234 43 KAEPTEFIQLDGYTVDYMPESDPDPNSELSLQGGRHFFNAVKEGDELKFATDDENERHLWVQAMYRATG 111 (117)
T ss_pred cCCchhheeecceEEeccCCCCCCcccccccccchhhhheeccCcEEEEeccchHHHHHHHHHHHHHcC
Confidence 233566667776665432211 11244555677889999999999999999987743
No 45
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=98.41 E-value=1.4e-06 Score=81.97 Aligned_cols=103 Identities=20% Similarity=0.321 Sum_probs=60.2
Q ss_pred EEEEEEeec-----C-----CCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhccccccccc
Q 004443 95 ISGVLYKWV-----N-----YGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTS 164 (753)
Q Consensus 95 ~eG~L~K~~-----n-----~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~ 164 (753)
++|||..+. + ..++|+.-|.||++++|+.||.+.+.... .....
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~--------------------------~~~~~ 55 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASS--------------------------TPPDI 55 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT---------------------------BS--
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccC--------------------------Ccccc
Confidence 589998641 1 23569999999999999999984321000 00000
Q ss_pred ccccCCCcccEEEcCceEEEecCC---CCCcEEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHH
Q 004443 165 QRLLNRKPFGEVHLKVSSIRDSKS---DDKRFSIFTG-TKRLHLRAETREDRFAWMEALQAVK 223 (753)
Q Consensus 165 ~~~~~~kp~G~I~L~~ssi~~~~~---d~~rF~I~t~-tkt~~LrAeS~edr~~WI~AL~~a~ 223 (753)
......+|.+.|.|..|......+ .++.|.+.++ +..|.|+|.|.+|+.+||.+|+.+.
T Consensus 56 ~~~~~~~p~~~i~L~~a~a~~a~dY~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 56 QSVENAKPDSSISLHHALAEIASDYTKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp -SS--E-----EE-TT-EEEEETTBTTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred cccccCcceeEEEecceEEEeCcccccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 001233467889998887655322 2567889886 6899999999999999999999774
No 46
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.39 E-value=2e-06 Score=80.48 Aligned_cols=99 Identities=25% Similarity=0.291 Sum_probs=66.7
Q ss_pred CccEEEEEE--eecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccC
Q 004443 92 GNGISGVLY--KWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLN 169 (753)
Q Consensus 92 ~~~~eG~L~--K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~ 169 (753)
|+.+||||. |.++..|||+++|.||.+..|..|....+..-. + .
T Consensus 1 gt~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~--p--------------------------------~ 46 (122)
T cd01243 1 GTAYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQ--P--------------------------------S 46 (122)
T ss_pred CccceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCC--c--------------------------------c
Confidence 456899996 345667899999999999999999976642100 0 0
Q ss_pred CCcccEEEcC--c---eE------EEecCCC-CCcEEEEe-------CCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 004443 170 RKPFGEVHLK--V---SS------IRDSKSD-DKRFSIFT-------GTKRLHLRAETREDRFAWMEALQAVKD 224 (753)
Q Consensus 170 ~kp~G~I~L~--~---ss------i~~~~~d-~~rF~I~t-------~tkt~~LrAeS~edr~~WI~AL~~a~~ 224 (753)
..+.=.|+|+ . ++ |..++.| ++-|.|.+ ++.+.+|-|+|..|++.|+.||..-..
T Consensus 47 ~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l~~ 120 (122)
T cd01243 47 VVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSELHK 120 (122)
T ss_pred CceeEEEEcCCCCEEEEEecHHHccccCcccCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHHHh
Confidence 0011222331 1 11 2333344 67787765 458999999999999999999988654
No 47
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.28 E-value=7.2e-06 Score=76.65 Aligned_cols=102 Identities=20% Similarity=0.269 Sum_probs=75.4
Q ss_pred cEEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCcc
Q 004443 94 GISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPF 173 (753)
Q Consensus 94 ~~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~ 173 (753)
+.+|-|.|-+...+.++.|+|-|=|++|-|-|..... .++.|.. ...-+-+
T Consensus 5 I~EG~L~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~-----------~~~~g~~------------------~~~y~~k 55 (112)
T cd01261 5 IMEGTLTRVGPSKKAKHERHVFLFDGLMVLCKSNHGQ-----------PRLPGAS------------------SAEYRLK 55 (112)
T ss_pred cccCcEEEEecccCCcceEEEEEecCeEEEEEeccCc-----------ccccccc------------------cceEEEE
Confidence 5789999987555779999999999999999964431 0111111 0112356
Q ss_pred cEEEcCceEEEecCCC---CCcEEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHH
Q 004443 174 GEVHLKVSSIRDSKSD---DKRFSIFTG-TKRLHLRAETREDRFAWMEALQAVKD 224 (753)
Q Consensus 174 G~I~L~~ssi~~~~~d---~~rF~I~t~-tkt~~LrAeS~edr~~WI~AL~~a~~ 224 (753)
+.++|....|....+. .+.|.|.+. ++.|.|+|.|++++.+||++|..++.
T Consensus 56 ~~~~l~~~~V~d~~d~~~~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 56 EKFFMRKVDINDKPDSSEYKNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred EEEeeeeeEEEEcCCCcccCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 7788887776644332 578999985 78999999999999999999999865
No 48
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.19 E-value=1.1e-05 Score=74.58 Aligned_cols=92 Identities=18% Similarity=0.319 Sum_probs=63.8
Q ss_pred EEEEEEee--cCC--CCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCC
Q 004443 95 ISGVLYKW--VNY--GKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNR 170 (753)
Q Consensus 95 ~eG~L~K~--~n~--~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~ 170 (753)
+||||.=- ++. .+||+++|.||.+-.|..|....+..- .
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~-------------------------------------~ 44 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKEN-------------------------------------S 44 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccC-------------------------------------C
Confidence 68999643 344 369999999999999999997654210 0
Q ss_pred CcccEEEcCc---------e-EEEecCCC-CCcEEEEeC--CeEEEEEcCCHHHHHHHHHHHHHHH
Q 004443 171 KPFGEVHLKV---------S-SIRDSKSD-DKRFSIFTG--TKRLHLRAETREDRFAWMEALQAVK 223 (753)
Q Consensus 171 kp~G~I~L~~---------s-si~~~~~d-~~rF~I~t~--tkt~~LrAeS~edr~~WI~AL~~a~ 223 (753)
.|.-+++|.. + -|..++.| ++-|.|.++ .++.+|-|+|..|++.|+.||..-+
T Consensus 45 ~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 45 TPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred CcEEEEEccceeeeecccHHHeeecCcccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHhc
Confidence 1222222221 1 13344444 778888775 4999999999999999999997643
No 49
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.04 E-value=1.9e-05 Score=70.62 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=66.7
Q ss_pred cEEEEEEeecCCCCCceeeEEEEeC-CeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCc
Q 004443 94 GISGVLYKWVNYGKGWRPRWFVLQD-GVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKP 172 (753)
Q Consensus 94 ~~eG~L~K~~n~~kgWk~RWFVL~~-g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp 172 (753)
.+.|.+.|+.+++ +|+|=|+|.| .-|.|+..... ..
T Consensus 2 l~~g~v~Kr~glf--~kkR~LiLTd~PrL~yvdp~~~-----------------------------------------~~ 38 (89)
T cd01262 2 LKIGAVKKRKGLF--AKKRQLILTNGPRLIYVDPVKK-----------------------------------------VV 38 (89)
T ss_pred ceeeeeeehhccc--cceeeEEEecCceEEEEcCCcC-----------------------------------------eE
Confidence 4689999998864 7999999965 67777774221 25
Q ss_pred ccEEEcCceEEEecCCCCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 004443 173 FGEVHLKVSSIRDSKSDDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVK 223 (753)
Q Consensus 173 ~G~I~L~~ssi~~~~~d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~ 223 (753)
+|+|.+...++++.....+.|.|.|++|+|+|. +.....+.|+++|+.+.
T Consensus 39 KgeIp~s~~~l~v~~~~~~~F~I~Tp~rty~le-D~~~~a~~W~~~I~~~~ 88 (89)
T cd01262 39 KGEIPWSDVELRVEVKNSSHFFVHTPNKVYSFE-DPKGRASQWKKAIEDLQ 88 (89)
T ss_pred EeEecccccceEEEEecCccEEEECCCceEEEE-CCCCCHHHHHHHHHHHh
Confidence 799999874444444556899999999999995 55688999999998874
No 50
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.99 E-value=8.3e-06 Score=96.54 Aligned_cols=99 Identities=20% Similarity=0.458 Sum_probs=73.9
Q ss_pred CCccEEEEEEee--cCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhccccccccccccc
Q 004443 91 VGNGISGVLYKW--VNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLL 168 (753)
Q Consensus 91 ~~~~~eG~L~K~--~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~ 168 (753)
+.....|+|+-. +.-+.-|.|||++|.+|++.|+|...++ +
T Consensus 988 idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDE-------------------------------------k 1030 (1116)
T KOG3640|consen 988 IDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDE-------------------------------------K 1030 (1116)
T ss_pred cceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchh-------------------------------------c
Confidence 345677999876 3334459999999999999999986653 2
Q ss_pred CCCcccEEEcCceE---EEecCC----CCCcEEEEe-------------CCe-EEEEEcCCHHHHHHHHHHHHHHHHhc
Q 004443 169 NRKPFGEVHLKVSS---IRDSKS----DDKRFSIFT-------------GTK-RLHLRAETREDRFAWMEALQAVKDMF 226 (753)
Q Consensus 169 ~~kp~G~I~L~~ss---i~~~~~----d~~rF~I~t-------------~tk-t~~LrAeS~edr~~WI~AL~~a~~~~ 226 (753)
...|.|.|+|..|+ |.+... .++.|.|.+ ..| ...|.|++.++++.|+.+|+.+...+
T Consensus 1031 rK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~L 1109 (1116)
T KOG3640|consen 1031 RKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQL 1109 (1116)
T ss_pred ccCcceeeehhhhhccccccchhhhccCCceeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHHH
Confidence 33489999999987 333332 256688773 123 67799999999999999999986543
No 51
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=97.98 E-value=3.5e-06 Score=96.73 Aligned_cols=97 Identities=18% Similarity=0.380 Sum_probs=81.3
Q ss_pred ccEEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCc
Q 004443 93 NGISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKP 172 (753)
Q Consensus 93 ~~~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp 172 (753)
-.++||+.|-+...|.|+|||||+++|..+||+.+++. ..+|
T Consensus 249 ~ekSgy~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~--------------------------------------~~~p 290 (936)
T KOG0248|consen 249 MEKSGYWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNR--------------------------------------DEEP 290 (936)
T ss_pred hhcccchhcchHHHHHHHhHheeeccceEEEEEcCCCc--------------------------------------cccc
Confidence 45789999999889999999999999999999998762 2346
Q ss_pred ccEEEcCceEEEecCCCCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhcc
Q 004443 173 FGEVHLKVSSIRDSKSDDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKDMFP 227 (753)
Q Consensus 173 ~G~I~L~~ssi~~~~~d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~~~~ 227 (753)
.|.|++..-.+.+..+....|..++.+++|++-++|.---.+|+..|++++....
T Consensus 291 ~s~~d~~s~~~~~~~~~s~~fqli~~t~~~~~~~~s~~lt~dw~~iL~~~iKv~~ 345 (936)
T KOG0248|consen 291 ASKIDIRSVTKLEQQGAAYAFQLITSTDKMNFMTESERTTHDWVTILSAAIKATT 345 (936)
T ss_pred cCcccccccceeeccchhHHhhhhhhceeEEEeccChhhhhhhHHHHHHHHHHHh
Confidence 7777776655666666677899999999999999999999999999999987543
No 52
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.88 E-value=7.1e-05 Score=69.77 Aligned_cols=88 Identities=16% Similarity=0.290 Sum_probs=65.0
Q ss_pred EEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCccc
Q 004443 95 ISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPFG 174 (753)
Q Consensus 95 ~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~G 174 (753)
+||||--.++.-+.|||+|++|+...|+||++.... ++-.
T Consensus 2 kEGWmVHyT~~d~~rKRhYWrLDsK~Itlf~~e~~s----------------------------------------kyyK 41 (117)
T cd01239 2 KEGWMVHYTSSDNRRKKHYWRLDSKAITLYQEESGS----------------------------------------RYYK 41 (117)
T ss_pred ccceEEEEecCccceeeeEEEecCCeEEEEEcCCCC----------------------------------------eeeE
Confidence 689999999999999999999999999999985441 2333
Q ss_pred EEEcCce-EEE-------ecCCCCCcEEEEeCCeEEEEEcC--------------------CHHHHHHHHHHHHHH
Q 004443 175 EVHLKVS-SIR-------DSKSDDKRFSIFTGTKRLHLRAE--------------------TREDRFAWMEALQAV 222 (753)
Q Consensus 175 ~I~L~~s-si~-------~~~~d~~rF~I~t~tkt~~LrAe--------------------S~edr~~WI~AL~~a 222 (753)
+|.|..- +|. .....+..|.|.|.+.+|++.++ ..+..+.|-.||+.|
T Consensus 42 eIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 42 EIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EeehHHheEEeccCCCcCCCCCCCcEEEEEecCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 4444321 121 11345788999999999999764 345568899998865
No 53
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.75 E-value=7.3e-05 Score=69.38 Aligned_cols=93 Identities=23% Similarity=0.318 Sum_probs=60.4
Q ss_pred EEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCccc
Q 004443 95 ISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPFG 174 (753)
Q Consensus 95 ~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~G 174 (753)
++|+|+=+.--.|+||+|||+|+..-|+|+-+....+ + ++. -.+
T Consensus 2 ~~g~LylK~~gkKsWKk~~f~LR~SGLYy~~Kgksk~------s-rdL--------~cl--------------------- 45 (114)
T cd01259 2 MEGPLYLKADGKKSWKKYYFVLRSSGLYYFPKEKTKN------T-RDL--------ACL--------------------- 45 (114)
T ss_pred ccceEEEccCCCccceEEEEEEeCCeeEEccCCCcCC------H-HHH--------HHH---------------------
Confidence 5899998877778999999999999999987643211 0 000 000
Q ss_pred EEEcCceEE--------EecCCCCCcEEEEeC------Ce-EEEEEcCCHHHHHHHHHHHHHHHH
Q 004443 175 EVHLKVSSI--------RDSKSDDKRFSIFTG------TK-RLHLRAETREDRFAWMEALQAVKD 224 (753)
Q Consensus 175 ~I~L~~ssi--------~~~~~d~~rF~I~t~------tk-t~~LrAeS~edr~~WI~AL~~a~~ 224 (753)
..+..+.| .-.+..|..|+|..+ .| .-.|+|++++.+..||.||+-++-
T Consensus 46 -~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~Ky 109 (114)
T cd01259 46 -NLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIAKY 109 (114)
T ss_pred -HhcccCcEEEEechhhccCCCCCceEEEeccccCcccchhheeeccCCHHHHHHHHHHHHHHhh
Confidence 01111111 111233667877542 12 467999999999999999998863
No 54
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.71 E-value=7.6e-05 Score=85.37 Aligned_cols=98 Identities=19% Similarity=0.346 Sum_probs=62.9
Q ss_pred CccEEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCC
Q 004443 92 GNGISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRK 171 (753)
Q Consensus 92 ~~~~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~k 171 (753)
.....|||.|.+...+ |++|||.|.+|.++.....++.+.. ...+
T Consensus 376 Dv~~~G~l~k~~~~~~-wk~ry~~l~~~~l~~~~~~~~~~~~----------------------------------~~~~ 420 (478)
T PTZ00267 376 DVTHGGYLYKYSSDMR-WKKRYFYIGNGQLRISLSENPENDG----------------------------------VAPK 420 (478)
T ss_pred CcccceEEeccCCCcc-hhhheEEecCCceEEEeccccccCC----------------------------------CCCc
Confidence 3467999999988776 9999999988777766553332100 0001
Q ss_pred cccEEEcCceE-EEe--cCCCCCcEEEEe-CCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 004443 172 PFGEVHLKVSS-IRD--SKSDDKRFSIFT-GTKRLHLRAETREDRFAWMEALQAVKD 224 (753)
Q Consensus 172 p~G~I~L~~ss-i~~--~~~d~~rF~I~t-~tkt~~LrAeS~edr~~WI~AL~~a~~ 224 (753)
+.....+..+. +.. ....+..|.|.+ ..+.+.+.|+|+++|++||.+||.|..
T Consensus 421 ~~~l~~~~~v~pv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 477 (478)
T PTZ00267 421 SVNLETVNDVFPVPEVYSQKHPNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRACG 477 (478)
T ss_pred cccHHHhcccccccHHhcCCCCceEEEEecCCcEEEEecCChHHHHHHHHHHHHHhC
Confidence 11111122211 111 123366677755 677888889999999999999999853
No 55
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=97.57 E-value=4.9e-05 Score=86.15 Aligned_cols=109 Identities=25% Similarity=0.359 Sum_probs=73.8
Q ss_pred ccCCCCccEEEEEEe-ec--CCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccc
Q 004443 87 INDIVGNGISGVLYK-WV--NYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETT 163 (753)
Q Consensus 87 ~~~~~~~~~eG~L~K-~~--n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~ 163 (753)
+++..++.+||.|.- +| .++|.|+.|||.|.+..|.|.|-+.++.. .++. |-..++|-++.
T Consensus 729 vn~~gqp~iEGQLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS---~~~~-----IDl~~IRSVk~-------- 792 (851)
T KOG3723|consen 729 VNQDGQPLIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDS---DDCP-----IDLSKIRSVKA-------- 792 (851)
T ss_pred ecCCCCchhcchhhhhccchhhhhhhccceEEecchhhhcccCCCCCCC---CCCC-----ccHHHhhhHHH--------
Confidence 456667788999963 34 46799999999999999999886554221 0010 11111111110
Q ss_pred cccccCCCcccEEEcCceEEEecCCCCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhcc
Q 004443 164 SQRLLNRKPFGEVHLKVSSIRDSKSDDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKDMFP 227 (753)
Q Consensus 164 ~~~~~~~kp~G~I~L~~ssi~~~~~d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~~~~ 227 (753)
++.-+..++-.+.|.|+|.++||.|+|.++...++|++.|+-|.+-..
T Consensus 793 ----------------v~~kr~~rslpKAFEIFTAD~T~ILKaKDeKNAEEWlqCL~IavAHa~ 840 (851)
T KOG3723|consen 793 ----------------VAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAVAHAK 840 (851)
T ss_pred ----------------HHhhhhhcccchhhheeecCceEEeecccccCHHHHHHHHHHHHHHHH
Confidence 000011233367899999999999999999999999999998877544
No 56
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.51 E-value=3.9e-05 Score=87.15 Aligned_cols=45 Identities=24% Similarity=0.312 Sum_probs=35.6
Q ss_pred ccccCCCCccEEEEEEeecC-CC-CCceeeEEEE-eCCeEEEEeecCC
Q 004443 85 VKINDIVGNGISGVLYKWVN-YG-KGWRPRWFVL-QDGVLSYYKIHGP 129 (753)
Q Consensus 85 ~~~~~~~~~~~eG~L~K~~n-~~-kgWk~RWFVL-~~g~LsYYk~~~~ 129 (753)
....+..-++++|.|+|+++ .. |.||+.|..| .+|+|.||-+-++
T Consensus 294 tigsGRAIPIKQg~LlKrSgk~L~keWKKKYVtlcsnG~LtYh~sL~d 341 (749)
T KOG0705|consen 294 TIGSGRAIPIKQGMLLKRSGKSLNKEWKKKYVTLCSNGVLTYHPSLGD 341 (749)
T ss_pred hhcCCcccchhhhhHHHhcchHHHHHHhhhheeeccCcceeecccHHH
Confidence 33455567999999999953 34 8999999999 8899999986443
No 57
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.41 E-value=0.00066 Score=80.19 Aligned_cols=97 Identities=19% Similarity=0.369 Sum_probs=62.4
Q ss_pred CccEEEEEEeecCC--CCC-ceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhccccccccccccc
Q 004443 92 GNGISGVLYKWVNY--GKG-WRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLL 168 (753)
Q Consensus 92 ~~~~eG~L~K~~n~--~kg-Wk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~ 168 (753)
...++|||+--+.. +.. -++|||||++..|.|||.+..++ .
T Consensus 3 ~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-~----------------------------------- 46 (719)
T PLN00188 3 KVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-Q----------------------------------- 46 (719)
T ss_pred cceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-c-----------------------------------
Confidence 34689999998632 222 69999999999999999865432 0
Q ss_pred CCCcccEEEcCceEEEecCC----CCCcEEE---Ee---CCeEEEEEcCCHHHHHHHHHHHHHHHHhc
Q 004443 169 NRKPFGEVHLKVSSIRDSKS----DDKRFSI---FT---GTKRLHLRAETREDRFAWMEALQAVKDMF 226 (753)
Q Consensus 169 ~~kp~G~I~L~~ssi~~~~~----d~~rF~I---~t---~tkt~~LrAeS~edr~~WI~AL~~a~~~~ 226 (753)
.|..+.-+..+.-.++.. ..+.|+| +. .++...|-|.|.+|..+||+||+.|++..
T Consensus 47 --~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 47 --VPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred --ccceeeccCCCceEeecCceEEcCceEEEEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 011111111111111111 0223333 32 46789999999999999999999999853
No 58
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.41 E-value=0.00028 Score=82.13 Aligned_cols=96 Identities=22% Similarity=0.338 Sum_probs=69.7
Q ss_pred CccEEEEE-Eeec----CCC-CCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccc
Q 004443 92 GNGISGVL-YKWV----NYG-KGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQ 165 (753)
Q Consensus 92 ~~~~eG~L-~K~~----n~~-kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~ 165 (753)
++.++|.| .|+. ..+ +..|+|||-|.+..|+|-|+.+.
T Consensus 563 p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~------------------------------------ 606 (800)
T KOG2059|consen 563 PVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGK------------------------------------ 606 (800)
T ss_pred CceecccceEeccccccchhhhhhhheEEEeccceeEEecCCcc------------------------------------
Confidence 34455544 4542 222 45899999999999999998553
Q ss_pred cccCCCcccEEEcCceEE----EecC-CCCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhccc
Q 004443 166 RLLNRKPFGEVHLKVSSI----RDSK-SDDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKDMFPR 228 (753)
Q Consensus 166 ~~~~~kp~G~I~L~~ssi----~~~~-~d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~~~~~ 228 (753)
+|.+.|.|+.... .+.. ...+.|.|++.+|+++|+|.+-.|..+|+.||..+..+-+.
T Consensus 607 -----q~~~~Ipl~nI~avEklee~sF~~knv~qVV~~drtly~Q~~n~vEandWldaL~kvs~~N~~ 669 (800)
T KOG2059|consen 607 -----QPIYTIPLSNIRAVEKLEEKSFKMKNVFQVVHTDRTLYVQAKNCVEANDWLDALRKVSCCNQN 669 (800)
T ss_pred -----CcccceeHHHHHHHHHhhhhccCCCceEEEEecCcceeEecCCchHHHHHHHHHHHHhccCcc
Confidence 4667777754321 1111 22677999999999999999999999999999999776544
No 59
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.35 E-value=0.00056 Score=63.61 Aligned_cols=99 Identities=23% Similarity=0.275 Sum_probs=59.4
Q ss_pred EEEEeecC----CCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCc
Q 004443 97 GVLYKWVN----YGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKP 172 (753)
Q Consensus 97 G~L~K~~n----~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp 172 (753)
|||..+.. ..+.||+|+++|.++-|..|++..-.+-. +.++.....- ... .
T Consensus 3 GW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~-------------------w~~p~~~y~L---~~~---a 57 (108)
T cd01258 3 GWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVED-------------------WSRPLYVYKL---YDV---A 57 (108)
T ss_pred eecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHH-------------------HhChhhhChh---HHh---h
Confidence 88888843 34789999999999999999985431100 0000000000 000 0
Q ss_pred ccEEEcCceEEEecCCCCCcEEEEeCC--eEEEEEcCCHHHHHHHHHHHHH
Q 004443 173 FGEVHLKVSSIRDSKSDDKRFSIFTGT--KRLHLRAETREDRFAWMEALQA 221 (753)
Q Consensus 173 ~G~I~L~~ssi~~~~~d~~rF~I~t~t--kt~~LrAeS~edr~~WI~AL~~ 221 (753)
...++.... -......+..|.|-+++ ...+|+.|+..|+..|..||+.
T Consensus 58 trvv~~~~~-~~~~~~~~~~F~irtg~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 58 TRLVKNSST-RRLNDQRDNCFLIRTGTQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred hheeccCCc-cCcCCCCceEEEEEcCCceeeEEEEecCHHHHHHHHHHHhc
Confidence 000110000 00012335679999997 5899999999999999999974
No 60
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.31 E-value=0.0016 Score=61.71 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=29.1
Q ss_pred CcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 004443 191 KRFSIFTGTKRLHLRAETREDRFAWMEALQAVK 223 (753)
Q Consensus 191 ~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~ 223 (753)
..|.|.++.|++.|-|.|+++.+.|+.||+.-.
T Consensus 89 ~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 89 KSIIIVTPDRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred eEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 345688999999999999999999999998654
No 61
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.23 E-value=0.0036 Score=57.27 Aligned_cols=87 Identities=20% Similarity=0.224 Sum_probs=63.9
Q ss_pred cEEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCcc
Q 004443 94 GISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPF 173 (753)
Q Consensus 94 ~~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~ 173 (753)
.++|.|.-++. =+.|+.-|=+.+|-|.|..++ + -+-+
T Consensus 5 lleg~l~~~~~----~~eR~vFLFe~~ll~~K~~~~-~--------------------------------------y~~K 41 (97)
T cd01222 5 LLEGRFREHGG----GKPRLLFLFQTMLLIAKPRGD-K--------------------------------------YQFK 41 (97)
T ss_pred eeeceEEeecC----CCceEEEEecccEEEEEecCC-e--------------------------------------eEEE
Confidence 46788874443 356988898899999997553 1 1134
Q ss_pred cEEEcCceEEEecCC-CCCcEEEEeCC---eEEEEEcCCHHHHHHHHHHHHHHH
Q 004443 174 GEVHLKVSSIRDSKS-DDKRFSIFTGT---KRLHLRAETREDRFAWMEALQAVK 223 (753)
Q Consensus 174 G~I~L~~ssi~~~~~-d~~rF~I~t~t---kt~~LrAeS~edr~~WI~AL~~a~ 223 (753)
..|.+..-.|.++.+ |+++|.|.... ++|.|+|.|++++..||++|+.++
T Consensus 42 ~~i~~~~l~i~e~~~~d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 42 AYIPCKNLMLVEHLPGEPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred EEEEecceEEecCCCCCCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 556666555555543 58999986643 799999999999999999999875
No 62
>PLN02866 phospholipase D
Probab=97.21 E-value=0.0019 Score=79.03 Aligned_cols=112 Identities=18% Similarity=0.237 Sum_probs=71.3
Q ss_pred CCccEEEEEEeec-----C------CC---------CCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchh
Q 004443 91 VGNGISGVLYKWV-----N------YG---------KGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEEST 150 (753)
Q Consensus 91 ~~~~~eG~L~K~~-----n------~~---------kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~ 150 (753)
.+-.+|||+.|+. + .. ..|++|||||+++.|.|.+...+.++. ++-+.-.
T Consensus 180 g~K~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~~p~~~~~~-------~v~lfD~--- 249 (1068)
T PLN02866 180 GPKLKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLEDPFDAKPL-------DIIVFDV--- 249 (1068)
T ss_pred CCCcceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEecCCCCcee-------EEEEEec---
Confidence 4456799999992 1 00 359999999999999999776553311 0100000
Q ss_pred hhhhhcccccccccccccCCCcccEEEcCceEEEecCCCCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhcc
Q 004443 151 RIISKRKHKKETTSQRLLNRKPFGEVHLKVSSIRDSKSDDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKDMFP 227 (753)
Q Consensus 151 r~~~~~~~~~~~~~~~~~~~kp~G~I~L~~ssi~~~~~d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~~~~ 227 (753)
+... ..+-.|.|.|..- +++...-...|.|.+++|++.|+|.|.....+|+.+|+.+....+
T Consensus 250 ------~~~~--------~~~~~~~~~~~~~-~k~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~ai~~~~~~~~ 311 (1068)
T PLN02866 250 ------LPAS--------NGNGEGQISLAKE-IKERNPLRFGFKVTCGNRSIRLRTKSSAKVKDWVAAINDAGLRPP 311 (1068)
T ss_pred ------cccc--------ccCCCcceeeccc-ccccCCCcceEEEecCceEEEEEECCHHHHHHHHHHHHHHHhccC
Confidence 0000 0111244444222 222222356788999999999999999999999999999975443
No 63
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=97.01 E-value=0.0012 Score=75.55 Aligned_cols=103 Identities=22% Similarity=0.340 Sum_probs=71.6
Q ss_pred CCCCccEEEEEEee--cCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhccccccccccc
Q 004443 89 DIVGNGISGVLYKW--VNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQR 166 (753)
Q Consensus 89 ~~~~~~~eG~L~K~--~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~ 166 (753)
...+.+++||||-+ ..+++.|-+-|++.+...-.+ +|-+..++ .|
T Consensus 261 ~p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~---------TMvp~~qk-------------------~g----- 307 (812)
T KOG1451|consen 261 RPTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIF---------TMVPANQK-------------------TG----- 307 (812)
T ss_pred CCCCcccceeeeehhhhhccchhhhheeEeecccceE---------EEeecccC-------------------CC-----
Confidence 34578999999987 568899999998874432111 11111000 00
Q ss_pred ccCCCcccEEEcCceEEEecCCCCCcEE--EEeCCe--EEEEEcCCHHHHHHHHHHHHHHHHh
Q 004443 167 LLNRKPFGEVHLKVSSIRDSKSDDKRFS--IFTGTK--RLHLRAETREDRFAWMEALQAVKDM 225 (753)
Q Consensus 167 ~~~~kp~G~I~L~~ssi~~~~~d~~rF~--I~t~tk--t~~LrAeS~edr~~WI~AL~~a~~~ 225 (753)
..-.+..++.|+-|+-+...+-|+||| |.+..| +.+++|-|++||..||+|+-.+.-.
T Consensus 308 -~k~g~~~~~~lKsC~RRktdSIdKRFCFDve~~erpgviTmQALSE~drrlWmeAMDG~ep~ 369 (812)
T KOG1451|consen 308 -TKMGQTATFKLKSCSRRKTDSIDKRFCFDVEVEERPGVITMQALSEKDRRLWMEAMDGAEPS 369 (812)
T ss_pred -CcCCCcceEEehhhccCcccccccceeeeeeecccCCeeehHhhhhhHHHHHHHHhcCCCcc
Confidence 011256678899999887777799988 556555 8999999999999999999888433
No 64
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.98 E-value=0.009 Score=55.72 Aligned_cols=93 Identities=15% Similarity=0.242 Sum_probs=67.6
Q ss_pred cEEEEEEeecCCCCCc-eeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCc
Q 004443 94 GISGVLYKWVNYGKGW-RPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKP 172 (753)
Q Consensus 94 ~~eG~L~K~~n~~kgW-k~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp 172 (753)
+.+|-|.+.+. .+|| |.|.|-|=|+.|-|.|..... ...-.-
T Consensus 3 i~~Gel~~~s~-~~g~~q~R~~FLFD~~LI~CKkd~~r------------------------------------~~~~~y 45 (109)
T cd01224 3 FLQGEATRQKQ-NKGWNSSRVLFLFDHQMVLCKKDLIR------------------------------------RDHLYY 45 (109)
T ss_pred eEeeeEEEEec-ccCCcccEEEEEecceEEEEeccccc------------------------------------CCcEEE
Confidence 56889988763 3455 579999999999999952110 001125
Q ss_pred ccEEEcCceEEEecCCC---------CCcEEEEeC--CeEEEEEcCCHHHHHHHHHHHHHHH
Q 004443 173 FGEVHLKVSSIRDSKSD---------DKRFSIFTG--TKRLHLRAETREDRFAWMEALQAVK 223 (753)
Q Consensus 173 ~G~I~L~~ssi~~~~~d---------~~rF~I~t~--tkt~~LrAeS~edr~~WI~AL~~a~ 223 (753)
+|.|.|..+.|....+. .+.|.|+.. .+.|.|.|.|+++...||+||..-+
T Consensus 46 Kgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~er 107 (109)
T cd01224 46 KGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFALER 107 (109)
T ss_pred EEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHHhh
Confidence 78999999888765433 245777765 4789999999999999999998654
No 65
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.00053 Score=77.97 Aligned_cols=118 Identities=20% Similarity=0.292 Sum_probs=77.3
Q ss_pred CCCCccccccCCCCccEEEEEEee---------cCCC-CCceeeEEEEeCCeEEEEeecCCC-ccccchhccccceeecc
Q 004443 79 RAEPVDVKINDIVGNGISGVLYKW---------VNYG-KGWRPRWFVLQDGVLSYYKIHGPD-KIIVSEETERGCKVIGE 147 (753)
Q Consensus 79 ~~~~~~~~~~~~~~~~~eG~L~K~---------~n~~-kgWk~RWFVL~~g~LsYYk~~~~~-~~~~~~~~~~~~~viG~ 147 (753)
+.+-.|+.....+..-+.|+|..+ +-.+ +|||.-|-||++-+||+-|.+-.. +..+..+
T Consensus 492 ~~pfldv~~dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~kalse~~---------- 561 (774)
T KOG0932|consen 492 SNPFLDVPPDPSAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPGKALSESD---------- 561 (774)
T ss_pred CCccccCCCCCCchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcccchhhhh----------
Confidence 346688888888888999999754 3333 479999999999999888864331 1110000
Q ss_pred chhhhhhhcccccccccccccCCCcccEEEcCceEEEecC-CCCCcEEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 004443 148 ESTRIISKRKHKKETTSQRLLNRKPFGEVHLKVSSIRDSK-SDDKRFSIFTG-TKRLHLRAETREDRFAWMEALQAVKDM 225 (753)
Q Consensus 148 ~s~r~~~~~~~~~~~~~~~~~~~kp~G~I~L~~ssi~~~~-~d~~rF~I~t~-tkt~~LrAeS~edr~~WI~AL~~a~~~ 225 (753)
++ .+. .||-..++-..+- .....|.+.|. -|.|.|+|.|.++|+.||..|+-|.+.
T Consensus 562 -----lk----------------nav-svHHALAt~AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA~ 619 (774)
T KOG0932|consen 562 -----LK----------------NAV-SVHHALATPATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAAA 619 (774)
T ss_pred -----hh----------------hhh-hhhhhhcCCCcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 00 000 0111111111111 12556888885 699999999999999999999999998
Q ss_pred ccc
Q 004443 226 FPR 228 (753)
Q Consensus 226 ~~~ 228 (753)
|.-
T Consensus 620 fSa 622 (774)
T KOG0932|consen 620 FSA 622 (774)
T ss_pred ccC
Confidence 864
No 66
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.83 E-value=0.0037 Score=59.67 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=50.4
Q ss_pred ceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCcccEEEcCceEEEe---
Q 004443 109 WRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPFGEVHLKVSSIRD--- 185 (753)
Q Consensus 109 Wk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~G~I~L~~ssi~~--- 185 (753)
-+.||+.|=+++|-|-|.+..++..+.. .-+++.|.+..+....
T Consensus 27 ~~~vylfLFnDlLl~tkkK~~~~f~V~d---------------------------------y~~r~~l~V~~~e~~~~~~ 73 (125)
T cd01221 27 ARTIYLFLFNDLLLITKKKLGSTFVVFD---------------------------------YAPRSFLRVEKIEPDNQKI 73 (125)
T ss_pred CCcEEEEEecceEEEEEecCCCeEEEEe---------------------------------eccccceEEeecccccccc
Confidence 4588999999999999987655443311 1123333332221100
Q ss_pred -----cCCCCCcEEEE------eCCeEEEEEcCCHHHHHHHHHHHH
Q 004443 186 -----SKSDDKRFSIF------TGTKRLHLRAETREDRFAWMEALQ 220 (753)
Q Consensus 186 -----~~~d~~rF~I~------t~tkt~~LrAeS~edr~~WI~AL~ 220 (753)
.......|.|. .-++.+.|+|+|+.||.+||+||.
T Consensus 74 ~~~~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 74 PLGSNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred cccccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 01235678774 235689999999999999999984
No 67
>PF15406 PH_6: Pleckstrin homology domain
Probab=96.76 E-value=0.0034 Score=58.12 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=41.1
Q ss_pred CcccEEEcCceEEEecCCCCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHH
Q 004443 171 KPFGEVHLKVSSIRDSKSDDKRFSIFTGTKRLHLRAETREDRFAWMEALQA 221 (753)
Q Consensus 171 kp~G~I~L~~ssi~~~~~d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~ 221 (753)
.|.|.|+|...+ .+.++....|.+...+...+|+|.|..||+.||.+|+.
T Consensus 62 ~P~GiinLadas-e~~~~g~~kF~f~~~G~khtF~A~s~aERD~Wv~~lk~ 111 (112)
T PF15406_consen 62 SPSGIINLADAS-EPEKDGSNKFHFKIKGHKHTFEAASAAERDNWVAQLKA 111 (112)
T ss_pred CCcceEehhhcc-ccccCCCceEEEEeCCceeeeecCCHHHhccHHHHhhc
Confidence 389999997655 22245578899888999999999999999999999864
No 68
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=96.57 E-value=0.0041 Score=70.72 Aligned_cols=104 Identities=21% Similarity=0.301 Sum_probs=65.9
Q ss_pred cCCCCccEEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhccccccc--cc-
Q 004443 88 NDIVGNGISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKET--TS- 164 (753)
Q Consensus 88 ~~~~~~~~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~--~~- 164 (753)
+..+.+.|+|+||-+.--.|+||+-||||+..-|||+.+..... + +.. ..+. ..+++ |.
T Consensus 312 ~s~~~pei~GfL~~K~dgkKsWKk~yf~LR~SGLYys~K~tsk~------~-r~L--------q~l~---~~~~snVYt~ 373 (622)
T KOG3751|consen 312 SSSSPPEIQGFLYLKEDGKKSWKKHYFVLRRSGLYYSTKGTSKE------P-RHL--------QCLA---DLHSSNVYTG 373 (622)
T ss_pred hcCCCccccceeeecccccccceeEEEEEecCcceEccCCCCCC------c-hhh--------HHHH---hcccCceEEe
Confidence 44567899999999988889999999999998899987633210 0 000 0000 00000 00
Q ss_pred -ccccCCCcccEEEcCceEEEecCCCCCcEEEEeC-----CeE-EEEEcCCHHHHHHHHHHHHHHHH
Q 004443 165 -QRLLNRKPFGEVHLKVSSIRDSKSDDKRFSIFTG-----TKR-LHLRAETREDRFAWMEALQAVKD 224 (753)
Q Consensus 165 -~~~~~~kp~G~I~L~~ssi~~~~~d~~rF~I~t~-----tkt-~~LrAeS~edr~~WI~AL~~a~~ 224 (753)
|.++.. ....|..|+|... +|- =.|+||++.-|..|+.||+-+|-
T Consensus 374 i~~rKky---------------ksPTd~~f~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~Ky 425 (622)
T KOG3751|consen 374 IGGRKKY---------------KSPTDYGFCIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKY 425 (622)
T ss_pred ecchhcc---------------CCCCCceEEeeeccccCcccceeeeecccchhHHHHHHHHHHHHH
Confidence 111110 1123677887642 232 36899999999999999998864
No 69
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=96.21 E-value=0.0036 Score=74.33 Aligned_cols=94 Identities=22% Similarity=0.368 Sum_probs=74.7
Q ss_pred CccEEEEEEeecCCCC-CceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCC
Q 004443 92 GNGISGVLYKWVNYGK-GWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNR 170 (753)
Q Consensus 92 ~~~~eG~L~K~~n~~k-gWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~ 170 (753)
++.+.|||.|-.--+. -.++||.-++...|.||.+..+ .
T Consensus 86 p~~~~gwldk~~pqg~~~~qkr~vkf~~~s~~yf~~~k~----------------------------------------p 125 (1186)
T KOG1117|consen 86 PVIKSGWLDKLSPQGEYPFQKRWVKFDGSSLEYFLSPKD----------------------------------------P 125 (1186)
T ss_pred chhhcchhhccCcCcccccCccceecCCCCccccCCCCC----------------------------------------C
Confidence 5789999999754332 3899999999999999997554 1
Q ss_pred CcccEEEcCceEEEecCCCCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhc
Q 004443 171 KPFGEVHLKVSSIRDSKSDDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKDMF 226 (753)
Q Consensus 171 kp~G~I~L~~ssi~~~~~d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~~~ 226 (753)
-++|.|.|...+... ...+..|.++++.|+|.++++++.+|..|+.+++.+....
T Consensus 126 y~k~~i~va~is~v~-~~gd~kfevitn~r~fvfr~e~~~~r~~w~s~l~s~~~~Q 180 (1186)
T KOG1117|consen 126 YSKGPIPVAAISAVR-NFGDNKFEVITNQRTFVFRQESEGERFIWVSPLQSALKEQ 180 (1186)
T ss_pred CCCCceeeehhhhhh-hccCceEEEEecceEEEEecCCcccceeeechhhhcchhh
Confidence 246777776555322 3558899999999999999999999999999999986543
No 70
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=96.14 E-value=0.0084 Score=69.04 Aligned_cols=101 Identities=17% Similarity=0.272 Sum_probs=72.8
Q ss_pred ccEEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCc
Q 004443 93 NGISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKP 172 (753)
Q Consensus 93 ~~~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp 172 (753)
.+++|.|+|.+.....-+.||.+|=+.+|-|-+-+.. + .|. .-.+
T Consensus 272 LiKEG~l~Kis~k~~~~qeRylfLFNd~~lyc~~r~~--~------------~~~---------------------k~~~ 316 (623)
T KOG4424|consen 272 LIKEGQLQKISAKNGTTQERYLFLFNDILLYCKPRKR--L------------PGS---------------------KYEV 316 (623)
T ss_pred HhhccceeeeeccCCCcceeEEEEehhHHHhhhhhhh--c------------ccc---------------------eecc
Confidence 5689999999877778999999999999999885431 0 000 0012
Q ss_pred ccEEEcCceEEEecCCC--CCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhccc
Q 004443 173 FGEVHLKVSSIRDSKSD--DKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKDMFPR 228 (753)
Q Consensus 173 ~G~I~L~~ssi~~~~~d--~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~~~~~ 228 (753)
+-.+.+..+-+.++... ...|.+....|.+.|+|.|.++..+||++|+.+++.+..
T Consensus 317 r~~~s~~~~~v~~~~~~~~~~tF~~~G~~r~vel~a~t~~ek~eWv~~I~~~Id~~kq 374 (623)
T KOG4424|consen 317 RARCSISHMQVQEDDNEELPHTFILTGKKRGVELQARTEQEKKEWVQAIQDAIDKHKQ 374 (623)
T ss_pred ceeeccCcchhcccccccCCceEEEecccceEEeecCchhhHHHHHHHHHHHHHHHHH
Confidence 23333433333333332 567877777999999999999999999999999987654
No 71
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=95.93 E-value=0.0027 Score=75.20 Aligned_cols=96 Identities=25% Similarity=0.400 Sum_probs=70.1
Q ss_pred ccEEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCc
Q 004443 93 NGISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKP 172 (753)
Q Consensus 93 ~~~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp 172 (753)
....|||...-..-.||++=|.|..+-+|++||++.|+- |
T Consensus 924 ~qLsg~LlrkfknssgwqkLwvvft~fcl~fyKS~qD~~----------------------------------------~ 963 (1036)
T KOG3531|consen 924 NQLSGYLLRKFKNSSGWQKLWVVFTNFCLFFYKSHQDSE----------------------------------------P 963 (1036)
T ss_pred hhhhHHHHHHhhccccceeeeeeecceeeEeeccccccc----------------------------------------c
Confidence 456899976644455999999999999999999988731 2
Q ss_pred ccEEEcCceEEEecCC-----CCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhccc
Q 004443 173 FGEVHLKVSSIRDSKS-----DDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKDMFPR 228 (753)
Q Consensus 173 ~G~I~L~~ssi~~~~~-----d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~~~~~ 228 (753)
...+.|.+-++..... .+..|.+.-..-+|.++|++.--...||+.|+.+-...-+
T Consensus 964 laslPlLgysvs~P~~~d~i~K~~vfkl~fk~hvyffraes~yt~~rw~evi~~a~~s~d~ 1024 (1036)
T KOG3531|consen 964 LASLPLLGYSVSIPAEPDPIQKDYVFKLKFKSHVYFFRAESYYTFERWMEVITDAPSSADR 1024 (1036)
T ss_pred cccccccccccCCCCCCCCcchhheeeeehhhhHHHHhhhhhhhhhhHHHHhhcCCccCCC
Confidence 2333344433322221 2456778778889999999999999999999998665443
No 72
>PF15404 PH_4: Pleckstrin homology domain
Probab=95.82 E-value=0.062 Score=54.71 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=29.5
Q ss_pred EEEEEEeecCCCCCceeeEEEEeCCeEEEEee
Q 004443 95 ISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKI 126 (753)
Q Consensus 95 ~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~ 126 (753)
++|+||.+.+....|+++++||-.|.|--|+.
T Consensus 1 ~sG~LY~K~~khs~F~~~~vvL~~G~Li~f~~ 32 (185)
T PF15404_consen 1 MSGYLYQKPRKHSTFKKYFVVLIPGFLILFQL 32 (185)
T ss_pred CCceeeecCCCCCCceEEEEEEeCCEEEEEEE
Confidence 57999999988889999999999999998887
No 73
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=95.50 E-value=0.0097 Score=55.17 Aligned_cols=93 Identities=16% Similarity=0.247 Sum_probs=60.1
Q ss_pred ccEEEEEEeecCCC-CCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCC
Q 004443 93 NGISGVLYKWVNYG-KGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRK 171 (753)
Q Consensus 93 ~~~eG~L~K~~n~~-kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~k 171 (753)
.++.||+.|-|+-+ ..||+|||-|-.+-|-+|...+..+.
T Consensus 3 cIvhGyi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~~--------------------------------------- 43 (116)
T cd01240 3 CIVHGYIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANKP--------------------------------------- 43 (116)
T ss_pred eEEeeehhhhCCHHHHHHHHHHheeCcceeeecccccccCC---------------------------------------
Confidence 37899999998754 67999999998888888643221110
Q ss_pred cccEEEcC----ceE-EEecCCCCCcEEE-EeCCeEEEEEcCCHHHHHHHHHHHHHHHHhcc
Q 004443 172 PFGEVHLK----VSS-IRDSKSDDKRFSI-FTGTKRLHLRAETREDRFAWMEALQAVKDMFP 227 (753)
Q Consensus 172 p~G~I~L~----~ss-i~~~~~d~~rF~I-~t~tkt~~LrAeS~edr~~WI~AL~~a~~~~~ 227 (753)
--|.+. +|. .... ..++...| +-+++.|.|+++++-+..+|...|+.+-....
T Consensus 44 --eLi~M~~i~~V~~e~~~i-K~~~CI~ik~k~~~k~vlt~~d~i~l~qW~~elr~a~r~Sq 102 (116)
T cd01240 44 --ELITMDQIEDVSVEFQQI-KEENCILLKIRDEKKIVLTNSDEIELKQWKKELRDAHRESQ 102 (116)
T ss_pred --cEEEeehhhhcchhheee-ccCceEEEEEcCCceEEEecCCcHHHHHHHHHHHHHHHHHH
Confidence 111111 110 0011 22333443 34688899999999999999999998865443
No 74
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=95.19 E-value=0.043 Score=63.50 Aligned_cols=35 Identities=31% Similarity=0.610 Sum_probs=30.2
Q ss_pred CCcEEE-EeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 004443 190 DKRFSI-FTGTKRLHLRAETREDRFAWMEALQAVKD 224 (753)
Q Consensus 190 ~~rF~I-~t~tkt~~LrAeS~edr~~WI~AL~~a~~ 224 (753)
+..|.+ ++++|.+-|+|.+.++|+.||.+||.+..
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 455 AHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 456776 55799999999999999999999999854
No 75
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.98 E-value=0.11 Score=47.24 Aligned_cols=90 Identities=18% Similarity=0.154 Sum_probs=62.2
Q ss_pred cEEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCcc
Q 004443 94 GISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPF 173 (753)
Q Consensus 94 ~~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~ 173 (753)
..+|+|.|-. .+.=|.|=|-|=+++|-|-+..... + +....-+..
T Consensus 4 v~eg~lvel~--~~~rK~R~~FLFnDlLvc~~ik~~~------------------------------~---~k~~kY~~~ 48 (96)
T cd01228 4 VKDSFLVELV--EGSRKLRHLFLFTDVLLCAKLKKTS------------------------------R---GKHQQYDCK 48 (96)
T ss_pred cccceeeeeh--hCCCcceEEEeeccEEEEEEeeecc------------------------------C---cccccccee
Confidence 4589999975 4557889899999999998864210 0 001122244
Q ss_pred cEEEcCceEEEecCCCCCcEEE-EeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 004443 174 GEVHLKVSSIRDSKSDDKRFSI-FTGTKRLHLRAETREDRFAWMEALQAVK 223 (753)
Q Consensus 174 G~I~L~~ssi~~~~~d~~rF~I-~t~tkt~~LrAeS~edr~~WI~AL~~a~ 223 (753)
-.|+|..-.+...+ |.+ .+++|+|.+-|.|..||.+||++|+.-.
T Consensus 49 w~IPL~dl~~~~~~-----~~~~~~~~KSf~~~asS~~Er~eW~~hI~~~~ 94 (96)
T cd01228 49 WYIPLADLSFPSEP-----FRIHNKNGKSYTFLLSSDYERSEWRESIQKLQ 94 (96)
T ss_pred EEEEhHHheecchh-----hhccccCCceEEEEecCHHHHHHHHHHHHHHh
Confidence 56777655554332 444 4689999999999999999999998653
No 76
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.55 E-value=0.17 Score=47.21 Aligned_cols=34 Identities=32% Similarity=0.602 Sum_probs=29.0
Q ss_pred CCCCcEEEEeCC----eEEEEEcCCHHHHHHHHHHHHH
Q 004443 188 SDDKRFSIFTGT----KRLHLRAETREDRFAWMEALQA 221 (753)
Q Consensus 188 ~d~~rF~I~t~t----kt~~LrAeS~edr~~WI~AL~~ 221 (753)
..++.|+|+.+. ++++|-|+|+++++.|++.|+.
T Consensus 77 ~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 77 LEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred ccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 447889987754 5899999999999999999974
No 77
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.51 E-value=0.37 Score=44.48 Aligned_cols=51 Identities=16% Similarity=0.302 Sum_probs=39.4
Q ss_pred cEEEcCceEE---EecCCCCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 004443 174 GEVHLKVSSI---RDSKSDDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKD 224 (753)
Q Consensus 174 G~I~L~~ssi---~~~~~d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~ 224 (753)
.++.|..-.| ..++.-.+.|.|.++.+.+.++|+|++++.+||..|+.|+.
T Consensus 46 ~~~~L~~i~V~ni~D~~~~kNafki~t~~~s~i~qaes~~~K~eWl~~le~a~~ 99 (100)
T cd01226 46 STYSLNSVAVVNVKDRENAKKVLKLLIFPESRIYQCESARIKTEWFEELEQAKR 99 (100)
T ss_pred EEEehHHeEEEecCCCcCcCceEEEEeCCccEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4555543332 32233367899999999999999999999999999999974
No 78
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.39 E-value=0.75 Score=43.42 Aligned_cols=52 Identities=17% Similarity=0.504 Sum_probs=40.5
Q ss_pred ccEEEcCceEEEecC-CCCCcEEEEeCC-----eEEEEEcCCHHHHHHHHHHHHHHHH
Q 004443 173 FGEVHLKVSSIRDSK-SDDKRFSIFTGT-----KRLHLRAETREDRFAWMEALQAVKD 224 (753)
Q Consensus 173 ~G~I~L~~ssi~~~~-~d~~rF~I~t~t-----kt~~LrAeS~edr~~WI~AL~~a~~ 224 (753)
+..|.|..-.+.++. .|+++|.|-..+ .+|.|+|.|.+.+++||..|+.+.+
T Consensus 56 K~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 56 KSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred ecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 566666666666654 468999986533 6999999999999999999998753
No 79
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=94.29 E-value=0.014 Score=68.21 Aligned_cols=90 Identities=6% Similarity=-0.252 Sum_probs=63.2
Q ss_pred CCccEEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCC
Q 004443 91 VGNGISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNR 170 (753)
Q Consensus 91 ~~~~~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~ 170 (753)
.-+...|+|.|+...+|.||.|||++.+|.+.||+++-+.
T Consensus 257 ~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~---------------------------------------- 296 (936)
T KOG0248|consen 257 QLTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIDI---------------------------------------- 296 (936)
T ss_pred cchHHHHHHHhHheeeccceEEEEEcCCCccccccCcccc----------------------------------------
Confidence 3457789999999999999999999999999999986641
Q ss_pred CcccEEEcCc-eEEE-ecCCCCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 004443 171 KPFGEVHLKV-SSIR-DSKSDDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVK 223 (753)
Q Consensus 171 kp~G~I~L~~-ssi~-~~~~d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~ 223 (753)
+.|++-+.. |++. ...+.. -...+-+.++.|-++...-.++||++++..-
T Consensus 297 -~s~~~~~~~~~s~~fqli~~t--~~~~~~~~s~~lt~dw~~iL~~~iKv~~~~~ 348 (936)
T KOG0248|consen 297 -RSVTKLEQQGAAYAFQLITST--DKMNFMTESERTTHDWVTILSAAIKATTLRE 348 (936)
T ss_pred -cccceeeccchhHHhhhhhhc--eeEEEeccChhhhhhhHHHHHHHHHHHhccc
Confidence 222332321 1110 001111 1244556789999999999999999998763
No 80
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=93.33 E-value=0.035 Score=64.23 Aligned_cols=93 Identities=22% Similarity=0.367 Sum_probs=62.5
Q ss_pred CccEEEEEEeec-CCCCCceeeEEEEeCCe-----EEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccc
Q 004443 92 GNGISGVLYKWV-NYGKGWRPRWFVLQDGV-----LSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQ 165 (753)
Q Consensus 92 ~~~~eG~L~K~~-n~~kgWk~RWFVL~~g~-----LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~ 165 (753)
+-...||||--| |..|.||+|||||-.-. ++-|+.
T Consensus 463 nmkhsgylyaig~nvwkrwkkrffvlvqvsqytfamcsyre--------------------------------------- 503 (1218)
T KOG3543|consen 463 NMKHSGYLYAIGRNVWKRWKKRFFVLVQVSQYTFAMCSYRE--------------------------------------- 503 (1218)
T ss_pred ccccceeehhhhhHHHHHhHhhEEEEEEhhhhhhHhhhhhh---------------------------------------
Confidence 344589999886 66789999999994321 122222
Q ss_pred cccCCCcccEEEcCceEEEecCCC-----CC-cEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 004443 166 RLLNRKPFGEVHLKVSSIRDSKSD-----DK-RFSIFTGTKRLHLRAETREDRFAWMEALQAVKDM 225 (753)
Q Consensus 166 ~~~~~kp~G~I~L~~ssi~~~~~d-----~~-rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~~ 225 (753)
+...|..-|.|.+-+|.-.... .+ .|.-+..+.+..|..+++.||.-|++|+-.|...
T Consensus 504 --kkaepqel~qldgytvdytdp~pglqgg~~ffnavkegdtvifasddeqdr~lwvqamyratgq 567 (1218)
T KOG3543|consen 504 --KKAEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVKEGDTVIFASDDEQDRHLWVQAMYRATGQ 567 (1218)
T ss_pred --cccChHHHhhccCeeeccCCCCCccccchHHHHHhccCceEEeccCchhhhhHHHHHHHHhhCC
Confidence 1222556677777776543222 22 2445556778899999999999999999888654
No 81
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=92.11 E-value=0.13 Score=61.65 Aligned_cols=92 Identities=20% Similarity=0.258 Sum_probs=70.9
Q ss_pred CCCccEEEEEEeecCCCCCceeeEE-EEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhccccccccccccc
Q 004443 90 IVGNGISGVLYKWVNYGKGWRPRWF-VLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLL 168 (753)
Q Consensus 90 ~~~~~~eG~L~K~~n~~kgWk~RWF-VL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~ 168 (753)
.+++...|||.-+| .|..-| +|..+.+--||...+-. +|.+
T Consensus 189 p~pP~raG~lelrg-----~kak~f~~vsp~~vqL~knlq~f~-------------lgig-------------------- 230 (1186)
T KOG1117|consen 189 PVPPPRAGWLELRG-----FKAKLFVAVSPERVQLYKNLQSFP-------------LGIG-------------------- 230 (1186)
T ss_pred CCCCCCccchhccc-----cccceeEEecCceeeeeccccccc-------------CCce--------------------
Confidence 34588899997654 555544 56899999999865421 1211
Q ss_pred CCCcccEEEcCceEEEecCCCCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 004443 169 NRKPFGEVHLKVSSIRDSKSDDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKDM 225 (753)
Q Consensus 169 ~~kp~G~I~L~~ssi~~~~~d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~~ 225 (753)
.-.|.+.++++++... +-|.+.|+-|.|-|.|+++.+|+.|++|+|.+++.
T Consensus 231 ----it~I~m~~~nvk~vdr--~sfdl~Tp~r~fsftaese~erq~w~ea~q~siAe 281 (1186)
T KOG1117|consen 231 ----ITFIYMEVSNVKEVDR--RSFDLNTPYREFSFTAESETERQIWGEAPQPSIAE 281 (1186)
T ss_pred ----eEEEeccccccccccc--ceeccCCceeeeeeeeccchhhhhhhhccCccccc
Confidence 3468889998876544 88999999999999999999999999999988764
No 82
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.08 E-value=1.1 Score=41.99 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=56.7
Q ss_pred CCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCcccEEEcCceEEEe-
Q 004443 107 KGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPFGEVHLKVSSIRD- 185 (753)
Q Consensus 107 kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~G~I~L~~ssi~~- 185 (753)
..=+.|||||-.++|......... .+-.-.|.+.|+.-+|..
T Consensus 26 qe~~eRyLvLFp~~LlilS~s~r~-------------------------------------sGf~yqGkLPL~~i~v~~l 68 (111)
T cd01225 26 EEKRERYLVLFPNVLLMLSASPRM-------------------------------------SGFIYQGKLPLTGIIVTRL 68 (111)
T ss_pred cccceeEEEEcCceEEEEEcCCCc-------------------------------------cceEEeeeecccccEEech
Confidence 346789999998888877642210 011246888998888773
Q ss_pred -cC-CCCCcEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHH
Q 004443 186 -SK-SDDKRFSIFTGT-KRLHLRAETREDRFAWMEALQAV 222 (753)
Q Consensus 186 -~~-~d~~rF~I~t~t-kt~~LrAeS~edr~~WI~AL~~a 222 (753)
+. ...+.|.|..+. -+..+-+.+.+|.++||..|+.-
T Consensus 69 Ed~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~~ 108 (111)
T cd01225 69 EDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLNAN 108 (111)
T ss_pred HhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHhh
Confidence 22 225789988664 67888899999999999999874
No 83
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.48 E-value=4.4 Score=39.35 Aligned_cols=54 Identities=22% Similarity=0.347 Sum_probs=40.9
Q ss_pred cccEEEcCceEEEecC-CCCCcEEEEeC--CeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 004443 172 PFGEVHLKVSSIRDSK-SDDKRFSIFTG--TKRLHLRAETREDRFAWMEALQAVKDM 225 (753)
Q Consensus 172 p~G~I~L~~ssi~~~~-~d~~rF~I~t~--tkt~~LrAeS~edr~~WI~AL~~a~~~ 225 (753)
-+..|.|..-.+.++. .|+++|.|-+. ..+|.|+|.|.+.++.|+..|......
T Consensus 61 yK~~ikls~lglte~v~gd~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~ 117 (133)
T cd01227 61 FKQSLKMTAVGITENVKGDTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTS 117 (133)
T ss_pred EeeeEEeecccccccCCCCccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 3556666555555544 45789998764 459999999999999999999988654
No 84
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.82 E-value=3.7 Score=38.97 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=27.3
Q ss_pred EEEEe--CCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 004443 193 FSIFT--GTKRLHLRAETREDRFAWMEALQAVKDM 225 (753)
Q Consensus 193 F~I~t--~tkt~~LrAeS~edr~~WI~AL~~a~~~ 225 (753)
|.|.. +...|+|.|.|++++..||+||..|++-
T Consensus 79 f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 79 FYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred EEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 44554 3467999999999999999999999764
No 85
>PF15408 PH_7: Pleckstrin homology domain
Probab=88.58 E-value=0.24 Score=44.26 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=25.3
Q ss_pred EEEEEeecCCCCCceeeEEEEeCCeEEEEeecCC
Q 004443 96 SGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGP 129 (753)
Q Consensus 96 eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~ 129 (753)
|||||.-- -..-|+||.+|....|.+|..++.
T Consensus 1 EGYLY~~E--~~si~rRF~~L~~K~~~~~~~KGG 32 (104)
T PF15408_consen 1 EGYLYRDE--DSSIQRRFVMLRSKQFNMYEDKGG 32 (104)
T ss_pred CCeEEEec--cchHHHHHHhhhhceeEEecccCC
Confidence 58998742 123789999999999999998776
No 86
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=88.10 E-value=0.26 Score=57.83 Aligned_cols=40 Identities=28% Similarity=0.481 Sum_probs=31.8
Q ss_pred CCCccEEEEEEeec--CCC-CCceeeEEEEeCCeEEEEeecCC
Q 004443 90 IVGNGISGVLYKWV--NYG-KGWRPRWFVLQDGVLSYYKIHGP 129 (753)
Q Consensus 90 ~~~~~~eG~L~K~~--n~~-kgWk~RWFVL~~g~LsYYk~~~~ 129 (753)
.+...++|||++.. +++ ..|++=||||.|..|+.|.++..
T Consensus 559 l~~G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~ 601 (638)
T KOG1738|consen 559 LGRGDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRV 601 (638)
T ss_pred hccchhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhh
Confidence 34566799999875 233 35999999999999999999775
No 87
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=83.99 E-value=0.7 Score=51.50 Aligned_cols=102 Identities=25% Similarity=0.264 Sum_probs=57.7
Q ss_pred ccEEEEEEeec--CCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCC
Q 004443 93 NGISGVLYKWV--NYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNR 170 (753)
Q Consensus 93 ~~~eG~L~K~~--n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~ 170 (753)
..--|||.++. +-.+.|++-+.+|.+.-|-.|.+-.-.+-..+.. +++-.-...|++ ++|+ .+
T Consensus 292 vkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~keaws~P----~~~ypLvaTRLv-----hsg~----~~-- 356 (506)
T KOG3551|consen 292 VKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTKEAWSRP----RHTYPLVATRLV-----HSGS----GK-- 356 (506)
T ss_pred hhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhHHHhcCh----hhhhhhhhhhhe-----ecCC----CC--
Confidence 33459999995 3445699999999887777777632211000000 000000111111 0110 11
Q ss_pred CcccEEEcCceEEEecCCCCCcEEEEeCCe----EEEEEcCCHHHHHHHHHHHHH
Q 004443 171 KPFGEVHLKVSSIRDSKSDDKRFSIFTGTK----RLHLRAETREDRFAWMEALQA 221 (753)
Q Consensus 171 kp~G~I~L~~ssi~~~~~d~~rF~I~t~tk----t~~LrAeS~edr~~WI~AL~~ 221 (753)
|.+ . ..-+..|...||+| ++.||+++..|..+|..+|-.
T Consensus 357 ---~s~-~--------~g~~lsFa~RtGTrqGV~thlfrvEThrdLa~WtRslVq 399 (506)
T KOG3551|consen 357 ---GSV-I--------KGLTLSFATRTGTRQGVETHLFRVETHRELAAWTRSLVQ 399 (506)
T ss_pred ---CCC-c--------CCceEEEEEecccccceEEEEEEeccHHHHHHHHHHHHH
Confidence 111 0 11134699999875 899999999999999988743
No 88
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=82.57 E-value=0.022 Score=62.76 Aligned_cols=79 Identities=29% Similarity=0.504 Sum_probs=60.8
Q ss_pred CceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCcccEEEcCceE--EEe
Q 004443 108 GWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPFGEVHLKVSS--IRD 185 (753)
Q Consensus 108 gWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~G~I~L~~ss--i~~ 185 (753)
.|++-||||.+..|.||....-.. ...--|+|+|..|+ ...
T Consensus 34 ~~~k~~~~~~~~~~~~~~d~~A~~-------------------------------------~~~L~~~~~LR~C~~v~e~ 76 (593)
T KOG4807|consen 34 QWKKHWFVLTDSSLKYYRDSTAEE-------------------------------------ADELDGEIDLRSCTDVTEY 76 (593)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHh-------------------------------------cccCCccccHHHHHHHHHH
Confidence 499999999999999999632110 01135889998886 112
Q ss_pred cCCCCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 004443 186 SKSDDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVK 223 (753)
Q Consensus 186 ~~~d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~ 223 (753)
+......|+|.+-+..|.|.|-+.--+..||.|+....
T Consensus 77 a~q~nY~~~i~~~~~~~tL~~~~s~Ir~~~~~A~~kT~ 114 (593)
T KOG4807|consen 77 AVQRNYGFQIHTKDAVYTLSAMTSGIRRNWIEALRKTV 114 (593)
T ss_pred HHHhccceeecccchhhhhHHHHHHHHHHHHHHHHhcc
Confidence 23447889999999999999999999999999998553
No 89
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=80.40 E-value=3.4 Score=48.40 Aligned_cols=92 Identities=21% Similarity=0.186 Sum_probs=62.3
Q ss_pred CccEEEEEEeecCCCCCceeeEEEE-eCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCC
Q 004443 92 GNGISGVLYKWVNYGKGWRPRWFVL-QDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNR 170 (753)
Q Consensus 92 ~~~~eG~L~K~~n~~kgWk~RWFVL-~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~ 170 (753)
...++|+|.|+...+ =|+|.|+| ..+.|.|+.....
T Consensus 450 ~i~k~~~l~k~~~lf--~rkr~lllTn~~rll~~~~~~~----------------------------------------- 486 (604)
T KOG0592|consen 450 LILKEGALEKRQGLF--ARKRMLLLTNGPRLLYVDPQNL----------------------------------------- 486 (604)
T ss_pred hHHhHHHHHhhhhhh--hceeEEEecCCCeEEEEecccc-----------------------------------------
Confidence 345677887775444 46799999 5678888883221
Q ss_pred CcccEEEcCceEEEecCCCCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhccc
Q 004443 171 KPFGEVHLKVSSIRDSKSDDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKDMFPR 228 (753)
Q Consensus 171 kp~G~I~L~~ssi~~~~~d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~~~~~ 228 (753)
..+|+|.++.+. +......+.|.|.|+.|+|+|-- =+.....|-+||..++...+-
T Consensus 487 ~lk~eip~~~~~-~~e~~n~~~~~i~TP~k~~~l~d-~~~~as~w~~ai~~~~~~~~~ 542 (604)
T KOG0592|consen 487 VLKGEIPWSPDL-RVELKNSSTFFIHTPNKVYYLED-PEQRASVWCKAIETVRKRYSG 542 (604)
T ss_pred eeccccccCccc-ceeeccCcceEEECCccceeccC-cccchhHHHHhhhhhhhcccC
Confidence 135677776633 33334467899999999999954 335567899999999665543
No 90
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=77.54 E-value=2.6 Score=53.08 Aligned_cols=57 Identities=21% Similarity=0.415 Sum_probs=47.8
Q ss_pred ccEEEcCceEEEecCCCCCcEEEEe-C---CeEEEEEcCCHHHHHHHHHHHHHHHHhcccc
Q 004443 173 FGEVHLKVSSIRDSKSDDKRFSIFT-G---TKRLHLRAETREDRFAWMEALQAVKDMFPRM 229 (753)
Q Consensus 173 ~G~I~L~~ssi~~~~~d~~rF~I~t-~---tkt~~LrAeS~edr~~WI~AL~~a~~~~~~~ 229 (753)
.+.|.|..--|++.+.|.+.|.|++ . -..|.|.|.|.+||..||+-|+.++...++.
T Consensus 667 spVisL~~livRevAtd~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~~ 727 (1167)
T KOG3520|consen 667 SPVISLQKLIVREVATDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPRN 727 (1167)
T ss_pred CCceehHHHHHHHHhccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCcc
Confidence 5678887777788888888877554 3 4789999999999999999999999998873
No 91
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=74.48 E-value=0.63 Score=53.96 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=39.3
Q ss_pred cccEEEcCceEEEecCCC-C---CcEEEEe---CCeEEEEEcCCHHHHHHHHHHHHHHH
Q 004443 172 PFGEVHLKVSSIRDSKSD-D---KRFSIFT---GTKRLHLRAETREDRFAWMEALQAVK 223 (753)
Q Consensus 172 p~G~I~L~~ssi~~~~~d-~---~rF~I~t---~tkt~~LrAeS~edr~~WI~AL~~a~ 223 (753)
|.+.|+|++|.+.++..+ . ..|.|.. +...++|||++++.-..||.|-+.|.
T Consensus 400 p~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~WMAaCrLAS 458 (664)
T KOG3727|consen 400 PAISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYARWMAACRLAS 458 (664)
T ss_pred CCCchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHHHHHHHHHHhhHhh
Confidence 667888888887766655 2 2344432 46789999999999999999988774
No 92
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=74.25 E-value=0.17 Score=60.55 Aligned_cols=90 Identities=16% Similarity=0.292 Sum_probs=66.1
Q ss_pred EEEEEEeecCCCCCceeeEEEEeCCe-EEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCcc
Q 004443 95 ISGVLYKWVNYGKGWRPRWFVLQDGV-LSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPF 173 (753)
Q Consensus 95 ~eG~L~K~~n~~kgWk~RWFVL~~g~-LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp~ 173 (753)
..|-+.++.|-...||.|+|.+++.+ ++|-|.... ...
T Consensus 4 ~rgl~~~~~ne~Ea~k~r~~~~k~~~~~~vakTa~g-----------------------------------------~~~ 42 (1099)
T KOG1170|consen 4 TRGLDNDVDNEREAWKQSILRAKDRMPEKVAKTASG-----------------------------------------PLF 42 (1099)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHhccCC-----------------------------------------ccH
Confidence 35667777777778999999998877 445444221 123
Q ss_pred cEEEcCceEEEecCCC--CCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 004443 174 GEVHLKVSSIRDSKSD--DKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKDM 225 (753)
Q Consensus 174 G~I~L~~ssi~~~~~d--~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~~ 225 (753)
-++.|..+++.++... ...|+|+|+-|+..++|++..++..||.+++..+..
T Consensus 43 ~~~d~t~a~~~eSs~~n~~~sf~vi~~~rk~r~~adn~ke~e~wi~~~kt~q~~ 96 (1099)
T KOG1170|consen 43 ALLDLTSAHVAESSTNNPRPSFCVITPVRKHRLCADNRKEMEKWINQSKTPQHL 96 (1099)
T ss_pred HHHhcccccccccccCCCCCCeeEecccHHhhhhccchhHHHHhhccccchhhc
Confidence 4455666666555443 567999999999999999999999999999987653
No 93
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=72.13 E-value=4.6 Score=39.20 Aligned_cols=34 Identities=21% Similarity=0.069 Sum_probs=12.4
Q ss_pred cEEEEEEeecCCCCCceeeEEEEeCCeEEEEeec
Q 004443 94 GISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIH 127 (753)
Q Consensus 94 ~~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~ 127 (753)
+.+|-|.|++.....|-.=-+.|=|..|---|.+
T Consensus 2 i~~G~L~Rk~~~~~~~~di~~~LFDh~Lll~K~k 35 (135)
T PF15405_consen 2 IYKGDLKRKGDNSFNWVDIHVYLFDHYLLLTKPK 35 (135)
T ss_dssp ---------------S-EEEEEEESSEEEEEEEE
T ss_pred ccccccccccccccccceeEEEeeccEEEEEEEE
Confidence 4689999998888888776677777777666654
No 94
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=58.08 E-value=6.1 Score=48.20 Aligned_cols=98 Identities=28% Similarity=0.376 Sum_probs=70.7
Q ss_pred ccEEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCCc
Q 004443 93 NGISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKP 172 (753)
Q Consensus 93 ~~~eG~L~K~~n~~kgWk~RWFVL~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~kp 172 (753)
-+++|-|.|-. .||-|.|-|-|-..+|-|-. ++.+ + .+..+.
T Consensus 750 ~ir~g~llK~s--kkgLqqrmfFLfsdillyts-k~~~---~--------------------------------~~~fri 791 (1036)
T KOG3531|consen 750 FIRSGCLLKLS--KKGLQQRMFFLFSDILLYTS-KGPD---V--------------------------------QKCFRI 791 (1036)
T ss_pred hhhcCCchhhc--cccchhhhhhhhhhhheecc-CCCC---h--------------------------------hheeEe
Confidence 46789999964 47789998888777666643 3321 0 111224
Q ss_pred ccEEEcCceEEEecCC---CCCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhcccc
Q 004443 173 FGEVHLKVSSIRDSKS---DDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKDMFPRM 229 (753)
Q Consensus 173 ~G~I~L~~ssi~~~~~---d~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~~~~~~ 229 (753)
.|.|.|. -++..+.. -+..|.|.++.++.+..|.+..+..+|+..++.+++..++.
T Consensus 792 ~g~lP~~-l~~en~en~~s~p~~~ti~~~qk~i~vsast~~~sk~~~~~r~~~i~~~~k~ 850 (1036)
T KOG3531|consen 792 NGDLPLT-LTMENSENEWSVPHCFTISGAQKQIYVSASTRRESKKWEFDRRKAIDLAPKK 850 (1036)
T ss_pred ccCCceE-eeeecccccccCCceEEEeccceEEEEeccchhhhhhhhhccchhhhhcccc
Confidence 5666666 34443322 15789999999999999999999999999999999988874
No 95
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=55.20 E-value=1.3e+02 Score=35.61 Aligned_cols=37 Identities=30% Similarity=0.309 Sum_probs=30.0
Q ss_pred CCCCcccccccccCCcCCcccCCCCCCCCCcccccccc
Q 004443 694 RYNFTRFAITLNEVTPGLKVIILTASLHFSYMHTLSLT 731 (753)
Q Consensus 694 ~y~ft~fa~~LNe~~~~~~~~LppTDSRlRpd~~l~~~ 731 (753)
.|.+-+|--.||.-+ +|....|-|||=|-||++|+||
T Consensus 390 vWDLrq~kkpL~~~t-gL~t~~~~tdc~FSPd~kli~T 426 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRT-GLPTPFPGTDCCFSPDDKLILT 426 (641)
T ss_pred eeeccccccchhhhc-CCCccCCCCccccCCCceEEEe
Confidence 466666666777776 6777889999999999999886
No 96
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=46.39 E-value=70 Score=38.03 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=27.6
Q ss_pred ecCCCCCcEEEEeCCeEEEEEcCC------------HHHHHHHHHHHHHH
Q 004443 185 DSKSDDKRFSIFTGTKRLHLRAET------------REDRFAWMEALQAV 222 (753)
Q Consensus 185 ~~~~d~~rF~I~t~tkt~~LrAeS------------~edr~~WI~AL~~a 222 (753)
..+..+..|.|.|++-+|++ .++ .+-.+.|-.||+.|
T Consensus 474 p~~~~phcFEI~T~~~vyfV-ge~p~~~~~~~~g~g~d~a~~w~~ai~~a 522 (888)
T KOG4236|consen 474 PAGTNPHCFEIRTATTVYFV-GENPSSTPGGESGVGLDAAQGWETAIQQA 522 (888)
T ss_pred CCCCCCceEEEEeeeEEEEe-cCCCCCCccccccccchhhccCchhhhhc
Confidence 34566889999999966665 444 44588899999877
No 97
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=45.91 E-value=15 Score=43.30 Aligned_cols=91 Identities=18% Similarity=0.120 Sum_probs=58.6
Q ss_pred EEEEEEeecCCCCCceeeEEEE---eCCeEEEEeecCCCccccchhccccceeeccchhhhhhhcccccccccccccCCC
Q 004443 95 ISGVLYKWVNYGKGWRPRWFVL---QDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRK 171 (753)
Q Consensus 95 ~eG~L~K~~n~~kgWk~RWFVL---~~g~LsYYk~~~~~~~~~~~~~~~~~~viG~~s~r~~~~~~~~~~~~~~~~~~~k 171 (753)
+.+.|.+--..+++|..-|++. ++-+++-|....+- .
T Consensus 499 ~~s~l~~~~~~~~~g~~a~~~vP~~d~~~~~~Yg~~qDv----------------------------------------~ 538 (623)
T KOG4424|consen 499 ICSHLKYMEAAGKTGILAWSVVPKSDPLVDYSYGSPQDV----------------------------------------R 538 (623)
T ss_pred ehhhHHHHhhcCccceeeeeeccCCCCccccccCCcccc----------------------------------------c
Confidence 3444444333668899999999 55788878765541 1
Q ss_pred cccEEEcCceEEEec--CCC---CCcEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 004443 172 PFGEVHLKVSSIRDS--KSD---DKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKDM 225 (753)
Q Consensus 172 p~G~I~L~~ssi~~~--~~d---~~rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~~ 225 (753)
....|.|..+.+... ... ...|.++-....+||.|++++-++.|++-|..|..-
T Consensus 539 a~~~iPl~~~~v~~pe~~~~~D~~~~~k~~~s~~~~~~~a~~~q~qq~wl~~l~~A~~~ 597 (623)
T KOG4424|consen 539 AQATIPLPGVEVTIPEFVRREDLFHVFKLVQSHLSWHLAADDEQLQQRWLEVLLLAVSG 597 (623)
T ss_pred cccccccCccccCCCcccccchhcchhhhhhhcceeeeccCCHHHHHHHHHHHHhhhcc
Confidence 234455655544311 111 122344555679999999999999999999988553
No 98
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=38.87 E-value=49 Score=31.31 Aligned_cols=33 Identities=12% Similarity=0.364 Sum_probs=29.0
Q ss_pred cEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 004443 192 RFSIFTGTKRLHLRAETREDRFAWMEALQAVKD 224 (753)
Q Consensus 192 rF~I~t~tkt~~LrAeS~edr~~WI~AL~~a~~ 224 (753)
-|-|.|......|.++|..+.+.|+++|+.-..
T Consensus 72 yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~ 104 (110)
T PF08458_consen 72 YFGLKTAQGVVEFECDSQREYKRWVQGIQHMLS 104 (110)
T ss_pred EEEEEecCcEEEEEeCChhhHHHHHHHHHHHHH
Confidence 356899999999999999999999999987644
No 99
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=38.85 E-value=64 Score=34.27 Aligned_cols=62 Identities=23% Similarity=0.230 Sum_probs=33.2
Q ss_pred hHHHHHHHhhhhcc----HHHHHHHHHHH---hcccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 004443 245 TEKLRQLLSEEGVR----EEVIQESEQIM---RNEFAPLQSQLLLLKQKQWLLIDTLRQLETEKVDLEN 306 (753)
Q Consensus 245 te~Lr~rL~ee~~~----e~~ik~~E~i~---~~E~s~~~~ql~~l~~~~~~L~dtl~qLE~ek~~le~ 306 (753)
.++++.+|.++-.. +..|+++++-| +.|-...-++|..+++++..|-+.+++++.++.+...
T Consensus 13 lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~ 81 (230)
T PF10146_consen 13 LEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQE 81 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566665433222 23455544332 2333334467777777777777777777655554433
No 100
>PF14254 DUF4348: Domain of unknown function (DUF4348); PDB: 3SBU_A.
Probab=38.11 E-value=35 Score=36.88 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=25.0
Q ss_pred ccceeeeeecccceeeeeeeeE-EEEc-CCcceEEEEEeecc
Q 004443 588 KVTSSIYNLILGKLYCDHYGTM-RIEG-NREYSCKLKFKEQS 627 (753)
Q Consensus 588 ~ptt~i~nii~G~~~~e~~G~~-~I~~-~tg~~~~i~F~~k~ 627 (753)
.|.-.|+||+.|+.|.+-..++ .|+| .+|+.-++.|+.++
T Consensus 225 lP~~~i~NI~YGQky~~s~~KIl~~rGi~NG~e~~l~Fk~~~ 266 (273)
T PF14254_consen 225 LPKGKIYNINYGQKYTESNQKILVFRGIANGLETELYFKKRG 266 (273)
T ss_dssp --SSEEEEEESS----T-SEEEEEEEESSS--EEEEEEEEET
T ss_pred CCccceeeeecccccCCCCceEEEEEeecCceeEEEEEEEcC
Confidence 5788999999999999955555 4567 68999999998764
No 101
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=37.12 E-value=1.9e+02 Score=27.25 Aligned_cols=35 Identities=9% Similarity=0.222 Sum_probs=28.9
Q ss_pred CCCCCcEEEEe-CCeEEEEEcCCHHHHHHHHHHHHH
Q 004443 187 KSDDKRFSIFT-GTKRLHLRAETREDRFAWMEALQA 221 (753)
Q Consensus 187 ~~d~~rF~I~t-~tkt~~LrAeS~edr~~WI~AL~~ 221 (753)
++..+.|.+.. +.-.|.|.|.+++++..|+..|+.
T Consensus 71 PD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 71 PDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred cCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 44577898865 445899999999999999999975
No 102
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=36.81 E-value=61 Score=30.50 Aligned_cols=40 Identities=25% Similarity=0.260 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhhhhhc
Q 004443 276 LQSQLLLLKQKQWLLIDTLRQLETEKVDLENTVVDESQRQLID 318 (753)
Q Consensus 276 ~~~ql~~l~~~~~~L~dtl~qLE~ek~~le~t~~~es~~~~~~ 318 (753)
.++.++.|++++..|.+...+||.|+.=|-..+ |.+||+.
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~---spe~L~q 104 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKTLA---SPEQLAQ 104 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CHHHHHH
Confidence 467788888888889999999988765444433 4556544
No 103
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=35.94 E-value=2.1e+02 Score=28.42 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 004443 198 GTKRLHLRAETREDRFAWMEALQAVKDM 225 (753)
Q Consensus 198 ~tkt~~LrAeS~edr~~WI~AL~~a~~~ 225 (753)
+.++|+|++.+++-+.+.|..|+.....
T Consensus 129 pE~vfqLCcS~~E~k~~flK~Irsilre 156 (160)
T cd01255 129 PEKVFVLCCSTAESRNAFLKTIRSILRE 156 (160)
T ss_pred CcceEEEecCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999988654
No 104
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=32.42 E-value=73 Score=38.17 Aligned_cols=21 Identities=43% Similarity=0.740 Sum_probs=19.4
Q ss_pred eEEEEEcCCHHHHHHHHHHHH
Q 004443 200 KRLHLRAETREDRFAWMEALQ 220 (753)
Q Consensus 200 kt~~LrAeS~edr~~WI~AL~ 220 (753)
-.|.|+|+|..||+.||.||.
T Consensus 571 ~e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 571 TELLLSAESQSDRQRWISALR 591 (695)
T ss_pred eeeeecCCchHHHHHHHHhcC
Confidence 369999999999999999997
No 105
>PF09783 Vac_ImportDeg: Vacuolar import and degradation protein; InterPro: IPR018618 Members of this family are involved in the negative regulation of gluconeogenesis. They are required for both proteosome-dependent and vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase), where they probably regulate FBPase targeting from the FBPase-containing vesicles to the vacuole [, ].
Probab=31.16 E-value=1.4e+02 Score=30.53 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=29.6
Q ss_pred eeeeEEEEcCC-cceEEEEEeecccccCCCeEEEEEEECCCCcEEEEEeeeecceEE
Q 004443 605 HYGTMRIEGNR-EYSCKLKFKEQSIIDRNPHQVHGIVQDRNGKTVATLFGKWDESIH 660 (753)
Q Consensus 605 ~~G~~~I~~~t-g~~~~i~F~~k~~fg~~~~~V~G~V~d~~g~~~~~i~G~Wd~~l~ 660 (753)
++|.|+|.|-+ ...-..+| ++|+|.+ .++...++++|...-.
T Consensus 36 l~G~l~i~glt~~~p~itTf------------FeGEII~--~~~~~F~T~~W~a~~~ 78 (176)
T PF09783_consen 36 LCGYLEIKGLTDDHPEITTF------------FEGEIIG--FNKHSFLTEKWGANEE 78 (176)
T ss_pred EEEEEEEecCCCCCCcEEEE------------EeeEEec--CCCCceeccccCCCcc
Confidence 48999999954 44444556 6889995 3556677789987653
No 106
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=29.33 E-value=16 Score=40.79 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=18.7
Q ss_pred ccEEEEEEeecC-----CCC-CceeeEEEEe
Q 004443 93 NGISGVLYKWVN-----YGK-GWRPRWFVLQ 117 (753)
Q Consensus 93 ~~~eG~L~K~~n-----~~k-gWk~RWFVL~ 117 (753)
..++|+++|+.. ..+ +||+|||.|.
T Consensus 303 ~~~eg~~~~r~~~~~~~~~~~~fkk~~f~l~ 333 (333)
T cd05135 303 TVKEGYLHKRKTEGPQLLTRFAFKKRYFWLS 333 (333)
T ss_pred hhhhhHhhhccccCCCCcccccccceeeecC
Confidence 457999999852 223 6999999873
No 107
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=29.26 E-value=1.1e+02 Score=32.63 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCC-eEEEEeCCCCEEEEEEecccCCcceeEEEeCCcEEEEEE
Q 004443 504 RICKPFNPLLGE-TYEADYPDKGLQFFSEKVSHHPMIVACHCQGTGWKFWGD 554 (753)
Q Consensus 504 r~~KPfNPiLGE-Tfe~~~~d~g~r~iaEQVSHHPPIsA~~~e~~g~~~~g~ 554 (753)
-+.+||||-+=| +|++ |+ .--||-+.+||...||+++|-
T Consensus 181 PigekFDPn~HEAvfq~--p~----------~~k~pgtV~~v~k~Gy~L~~R 220 (236)
T KOG3003|consen 181 PIGEKFDPNEHEAVFQV--PD----------AAKEPGTVALVTKKGYKLNGR 220 (236)
T ss_pred CCCCCCCcchhheeEec--cc----------cCCCCCeEEEEeccCcccCCe
Confidence 468999998877 3443 22 227899999999999998864
No 108
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=27.03 E-value=51 Score=33.04 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=19.9
Q ss_pred CCCCCCCCCeEEEEeCCCCEEEEE
Q 004443 507 KPFNPLLGETYEADYPDKGLQFFS 530 (753)
Q Consensus 507 KPfNPiLGETfe~~~~d~g~r~ia 530 (753)
==|.|+.|+||.+...++|..|++
T Consensus 86 cnF~pipG~iYhLY~r~~G~~ylS 109 (159)
T PF10504_consen 86 CNFEPIPGQIYHLYRRENGQDYLS 109 (159)
T ss_pred cCceecCCCEEEEEECCCCCEEEE
Confidence 458899999999988777877766
No 109
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=26.81 E-value=1.4e+02 Score=31.72 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=25.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 004443 274 APLQSQLLLLKQKQWLLIDTLRQLETEKVDLENTV 308 (753)
Q Consensus 274 s~~~~ql~~l~~~~~~L~dtl~qLE~ek~~le~t~ 308 (753)
.++.+.+..|.+++...++.|||+......||..+
T Consensus 35 ~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 35 EEYRKEMEELLQERMAHVEELRQINQDINTLENII 69 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777788888888888777777776655
No 110
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=26.20 E-value=96 Score=36.35 Aligned_cols=32 Identities=25% Similarity=0.483 Sum_probs=25.7
Q ss_pred CCcEEEEeCC-eEEEEEcCCHHHHHHHHHHHHH
Q 004443 190 DKRFSIFTGT-KRLHLRAETREDRFAWMEALQA 221 (753)
Q Consensus 190 ~~rF~I~t~t-kt~~LrAeS~edr~~WI~AL~~ 221 (753)
.++|.|...+ -.....++...|.++|+++|+.
T Consensus 372 ~nafeis~~ti~rIv~~c~~~~~l~~wve~ln~ 404 (661)
T KOG2070|consen 372 RNAFEISGSTIERIVVSCNNQQDLQEWVEHLNK 404 (661)
T ss_pred cccccccccchhheeeccCChHHHHHHHHHhhh
Confidence 5778886654 3456678999999999999996
No 111
>PF12915 DUF3833: Protein of unknown function (DUF3833); InterPro: IPR024409 This is a family of uncharacterised proteins found in Proteobacteria.
Probab=25.73 E-value=1.5e+02 Score=30.06 Aligned_cols=58 Identities=24% Similarity=0.460 Sum_probs=39.1
Q ss_pred EEeecccccCCCeEEEEEEECCCCcEE----EEEeeeecceEEE-----EeCcCCCCCccccCCCCceEeeccCCCCC
Q 004443 622 KFKEQSIIDRNPHQVHGIVQDRNGKTV----ATLFGKWDESIHY-----VIGECSGKGKELESLSEACLLWKRSKPPK 690 (753)
Q Consensus 622 ~F~~k~~fg~~~~~V~G~V~d~~g~~~----~~i~G~Wd~~l~~-----~~~~~~~k~~~~~~~~~~~~lW~~~~~p~ 690 (753)
.|....+|.|+. .-.|.|.|..|++. ..|.|+|++..-. .-.|+ ...+.+|+..+..+
T Consensus 22 ~~~l~~fF~G~~-~A~G~~~dr~G~v~rrF~v~i~g~w~g~~~tL~E~F~y~DG----------e~q~R~W~l~~~~~ 88 (164)
T PF12915_consen 22 KFDLEEFFNGKL-VAWGMFQDRSGKVTRRFTVDIDGSWDGNTGTLDEDFVYDDG----------ETQTRVWTLTKTGD 88 (164)
T ss_pred ccCHHHHCCCcE-EEEEEEECCCCCEEEEEEEEEEEEEECCEEEEEEEEEECCC----------CEEEEEEEEEECCC
Confidence 455667788775 35899999999864 4799999987432 11222 24567888877543
No 112
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=25.61 E-value=32 Score=39.60 Aligned_cols=30 Identities=23% Similarity=-0.021 Sum_probs=23.7
Q ss_pred CccEEEEEEeecCCCC--CceeeEEEEeCCeE
Q 004443 92 GNGISGVLYKWVNYGK--GWRPRWFVLQDGVL 121 (753)
Q Consensus 92 ~~~~eG~L~K~~n~~k--gWk~RWFVL~~g~L 121 (753)
...+.|+++-+.+.++ .|+++|.+|..|.+
T Consensus 7 ~~~k~g~~~~~~~r~~~k~~~~~~~~L~~gs~ 38 (429)
T KOG4047|consen 7 CLVKDGVPDNHRNKFKVKNVRDDGAELGSGSM 38 (429)
T ss_pred cccccCccchhhhhhccccccccceeeecccc
Confidence 4567899988876654 89999999987754
No 113
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=25.41 E-value=70 Score=36.40 Aligned_cols=53 Identities=21% Similarity=0.385 Sum_probs=41.0
Q ss_pred ccEEEcCceEEEecC----CCCCcEEEEeCC--eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 004443 173 FGEVHLKVSSIRDSK----SDDKRFSIFTGT--KRLHLRAETREDRFAWMEALQAVKDM 225 (753)
Q Consensus 173 ~G~I~L~~ssi~~~~----~d~~rF~I~t~t--kt~~LrAeS~edr~~WI~AL~~a~~~ 225 (753)
+..|.|+-|.+...- ..++.|.|.+++ .++.|||.+..+...|.+||.++...
T Consensus 215 ~k~IpLKm~yvaR~~~~~DpEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~~ 273 (506)
T KOG3551|consen 215 RKTIPLKMAYVARNLIDADPENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVNT 273 (506)
T ss_pred ccccchhhHHHHhhCCCCCcccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHhh
Confidence 567888887653322 235678899864 58999999999999999999998654
No 114
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=24.35 E-value=28 Score=38.49 Aligned_cols=27 Identities=30% Similarity=0.594 Sum_probs=19.4
Q ss_pred CccEEEEEEeec----CCC-CCceeeEEEEeC
Q 004443 92 GNGISGVLYKWV----NYG-KGWRPRWFVLQD 118 (753)
Q Consensus 92 ~~~~eG~L~K~~----n~~-kgWk~RWFVL~~ 118 (753)
...++|.|.|+. ..+ |.||+|||.|.+
T Consensus 279 ~~~~~~~~~~r~~~~~~~~~~~~k~r~~~lt~ 310 (310)
T cd05134 279 ILLKEGFMIKRAQGRKRFGMKNFKKRWFRLTN 310 (310)
T ss_pred chhhhhhHHHhcccCCcccccchhheeeecCC
Confidence 456799999853 122 469999999863
No 115
>PRK00846 hypothetical protein; Provisional
Probab=22.42 E-value=2.5e+02 Score=24.97 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=24.3
Q ss_pred ccchHHHHHHHhhhhccHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Q 004443 242 QVSTEKLRQLLSEEGVREEVIQESEQIMRNEFAPLQSQLLLLKQKQWLLIDTLR 295 (753)
Q Consensus 242 ~~ste~Lr~rL~ee~~~e~~ik~~E~i~~~E~s~~~~ql~~l~~~~~~L~dtl~ 295 (753)
++..+.+..||.+..+.-+...+.-+-+...+...+.++..++++...|.+.|+
T Consensus 5 ~~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 5 SLRDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667776665543333322222333333344444444444444444443
No 116
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.82 E-value=2.4e+02 Score=27.30 Aligned_cols=60 Identities=12% Similarity=0.162 Sum_probs=40.7
Q ss_pred ccccchHHHHHHHhhhhccHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 004443 240 SIQVSTEKLRQLLSEEGVREEVIQESEQIMRNEFAPLQSQLLLLKQKQWLLIDTLRQLET 299 (753)
Q Consensus 240 ~~~~ste~Lr~rL~ee~~~e~~ik~~E~i~~~E~s~~~~ql~~l~~~~~~L~dtl~qLE~ 299 (753)
.++.....|.+|+...+-.-+-..++-+.+.+|+.+++..+..+..+...+-.....||.
T Consensus 58 ~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ 117 (126)
T PF07889_consen 58 SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEG 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344555678888877777666666777777788888887777777765554444555553
No 117
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=21.45 E-value=2.8e+02 Score=34.78 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=0.0
Q ss_pred cCCCcccEEEcCceEEEecCCC--CCcEEEEe-----CCeEEEEEcCCHHHHHHHHHHHHHHHHhccccccCCCCCCCCc
Q 004443 168 LNRKPFGEVHLKVSSIRDSKSD--DKRFSIFT-----GTKRLHLRAETREDRFAWMEALQAVKDMFPRMSNSELMAPMDS 240 (753)
Q Consensus 168 ~~~kp~G~I~L~~ssi~~~~~d--~~rF~I~t-----~tkt~~LrAeS~edr~~WI~AL~~a~~~~~~~~~~~~~~~~~~ 240 (753)
.+.-.+|..++..+-|...... ++.|..+- +.--|.|.|++.++..+|+++|+.+...
T Consensus 848 lGtl~rgi~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~--------------- 912 (1267)
T KOG1264|consen 848 LGTLCRGILDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWK--------------- 912 (1267)
T ss_pred cchhhhccccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHH---------------
Q ss_pred cccchHHHHHHHhhhhccHHHHHHHHHHHhcccchh
Q 004443 241 IQVSTEKLRQLLSEEGVREEVIQESEQIMRNEFAPL 276 (753)
Q Consensus 241 ~~~ste~Lr~rL~ee~~~e~~ik~~E~i~~~E~s~~ 276 (753)
..+|+.+. -+++-++.+-.|+|+|
T Consensus 913 -------a~tk~s~~-----k~kEk~krIA~ElSdL 936 (1267)
T KOG1264|consen 913 -------ADTKESEM-----KYKEKNKRIAIELSDL 936 (1267)
T ss_pred -------hhhhhhhh-----HHHHHHHHHHHHhhce
No 118
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=21.14 E-value=20 Score=39.63 Aligned_cols=26 Identities=35% Similarity=0.746 Sum_probs=19.6
Q ss_pred ccEEEEEEeecC----CC-CCceeeEEEEeC
Q 004443 93 NGISGVLYKWVN----YG-KGWRPRWFVLQD 118 (753)
Q Consensus 93 ~~~eG~L~K~~n----~~-kgWk~RWFVL~~ 118 (753)
..++|+|.|+.. .+ |.||+|||.|.+
T Consensus 283 ~~~e~~~~~r~~~~~~~~~~~~kkr~~~l~~ 313 (313)
T cd05394 283 HLKEGEMYKRAQGRTRIGKKNFKKRWFCLTS 313 (313)
T ss_pred hhHHHHHHhhccCCCccccccchhheeecCC
Confidence 567999999841 22 479999999853
No 119
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=20.85 E-value=25 Score=38.90 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=19.4
Q ss_pred CccEEEEEEeecC-----CCCCceeeEEEEe
Q 004443 92 GNGISGVLYKWVN-----YGKGWRPRWFVLQ 117 (753)
Q Consensus 92 ~~~~eG~L~K~~n-----~~kgWk~RWFVL~ 117 (753)
...++|++.|+.. ..+.||+|||.|.
T Consensus 285 ~~~k~g~~~~~~~~~~~~~~~~~k~r~~~lt 315 (315)
T cd05128 285 VVLKEGFMIKRAQGRGRLGRKNFKKRYFRLT 315 (315)
T ss_pred hhhhhhhhHhhcccCCCccccchhheeeecC
Confidence 3568999999741 2356999999983
Done!