Query 004444
Match_columns 753
No_of_seqs 258 out of 1724
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 23:33:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0020 Endoplasmic reticulum 100.0 5E-168 1E-172 1340.1 35.1 651 94-753 71-736 (785)
2 PTZ00272 heat shock protein 83 100.0 1E-164 2E-169 1423.7 62.2 646 96-753 3-660 (701)
3 PTZ00130 heat shock protein 90 100.0 2E-164 5E-169 1419.8 63.2 650 94-753 64-748 (814)
4 COG0326 HtpG Molecular chapero 100.0 4E-161 9E-166 1351.2 56.8 607 94-753 3-614 (623)
5 KOG0019 Molecular chaperone (H 100.0 1E-161 2E-166 1329.1 46.3 602 93-753 32-637 (656)
6 PRK05218 heat shock protein 90 100.0 5E-140 1E-144 1216.5 60.3 599 94-753 2-604 (613)
7 PRK14083 HSP90 family protein; 100.0 4E-130 8E-135 1124.9 55.6 564 97-753 2-585 (601)
8 PF00183 HSP90: Hsp90 protein; 100.0 1E-125 3E-130 1076.2 39.7 468 282-753 1-487 (531)
9 PF13589 HATPase_c_3: Histidin 99.7 1.2E-16 2.7E-21 153.0 9.9 103 116-247 1-105 (137)
10 TIGR00585 mutl DNA mismatch re 99.4 3.9E-12 8.4E-17 138.1 16.9 166 108-307 11-192 (312)
11 COG1389 DNA topoisomerase VI, 99.2 3.9E-11 8.4E-16 131.7 11.7 152 120-296 38-199 (538)
12 PRK00095 mutL DNA mismatch rep 99.1 2.3E-09 5.1E-14 126.4 18.0 160 107-299 10-180 (617)
13 PRK04184 DNA topoisomerase VI 99.0 2.1E-09 4.6E-14 123.3 13.9 154 120-300 38-203 (535)
14 TIGR01052 top6b DNA topoisomer 98.9 7.6E-09 1.6E-13 117.7 13.3 151 121-299 31-193 (488)
15 PRK14868 DNA topoisomerase VI 98.8 1.7E-08 3.7E-13 118.5 11.9 149 121-299 49-208 (795)
16 COG0323 MutL DNA mismatch repa 98.7 4.1E-08 8.9E-13 115.9 9.8 160 107-299 11-182 (638)
17 PRK14867 DNA topoisomerase VI 98.3 2.3E-06 4.9E-11 100.6 11.2 151 121-299 39-199 (659)
18 PF02518 HATPase_c: Histidine 98.3 1.9E-06 4E-11 78.6 6.9 80 121-229 8-87 (111)
19 PRK05559 DNA topoisomerase IV 98.2 2.1E-06 4.5E-11 101.7 8.2 153 119-299 38-200 (631)
20 smart00433 TOP2c Topoisomerase 98.2 2.5E-06 5.4E-11 100.5 6.4 155 122-307 5-173 (594)
21 TIGR01055 parE_Gneg DNA topois 98.0 1.3E-05 2.8E-10 94.9 9.0 157 119-308 31-203 (625)
22 TIGR01059 gyrB DNA gyrase, B s 97.9 2.1E-05 4.5E-10 93.9 8.0 148 120-298 32-190 (654)
23 PRK05644 gyrB DNA gyrase subun 97.9 2.9E-05 6.2E-10 92.2 8.8 156 121-307 40-207 (638)
24 PRK14939 gyrB DNA gyrase subun 97.7 8E-05 1.7E-09 89.4 8.6 155 120-308 39-208 (756)
25 KOG1978 DNA mismatch repair pr 97.6 7.7E-05 1.7E-09 86.6 6.9 159 109-299 11-180 (672)
26 KOG1979 DNA mismatch repair pr 97.4 0.00036 7.7E-09 79.6 7.3 151 113-299 22-186 (694)
27 KOG1977 DNA mismatch repair pr 97.1 0.00022 4.8E-09 82.4 2.4 147 118-295 21-175 (1142)
28 cd00075 HATPase_c Histidine ki 97.0 0.0027 5.7E-08 54.6 7.9 86 121-235 3-92 (103)
29 PRK10755 sensor protein BasS/P 96.8 0.002 4.3E-08 70.5 6.8 101 121-278 250-350 (356)
30 PRK10604 sensor protein RstB; 96.7 0.0036 7.8E-08 70.9 7.4 48 122-185 323-370 (433)
31 PRK09470 cpxA two-component se 96.6 0.0045 9.8E-08 69.6 7.8 48 122-185 357-404 (461)
32 TIGR02916 PEP_his_kin putative 96.6 0.0027 5.9E-08 76.2 6.3 72 122-226 583-654 (679)
33 PRK10549 signal transduction h 96.6 0.0045 9.8E-08 69.9 7.5 78 122-227 356-433 (466)
34 PRK11100 sensory histidine kin 96.5 0.007 1.5E-07 68.0 8.5 101 122-277 372-472 (475)
35 smart00387 HATPase_c Histidine 96.5 0.0032 7E-08 55.0 4.3 80 121-229 8-87 (111)
36 TIGR01386 cztS_silS_copS heavy 96.4 0.0073 1.6E-07 67.6 7.7 100 122-276 357-456 (457)
37 TIGR02938 nifL_nitrog nitrogen 96.3 0.0079 1.7E-07 67.5 7.2 53 121-185 390-444 (494)
38 TIGR01058 parE_Gpos DNA topois 96.2 0.0097 2.1E-07 71.0 7.7 159 121-308 37-206 (637)
39 PRK11006 phoR phosphate regulo 96.1 0.014 3E-07 65.9 7.9 78 121-226 320-397 (430)
40 PLN03237 DNA topoisomerase 2; 96.1 0.023 5E-07 72.3 10.1 163 121-310 80-260 (1465)
41 PRK10364 sensor protein ZraS; 96.0 0.016 3.4E-07 65.9 7.8 50 122-185 352-401 (457)
42 PRK11086 sensory histidine kin 95.9 0.023 5E-07 65.3 8.7 53 121-185 436-488 (542)
43 PRK10815 sensor protein PhoQ; 95.9 0.021 4.5E-07 66.1 8.0 98 122-279 382-479 (485)
44 PRK09303 adaptive-response sen 95.5 0.038 8.3E-07 61.7 8.2 76 122-227 276-352 (380)
45 PLN03128 DNA topoisomerase 2; 95.4 0.034 7.4E-07 70.0 8.0 94 121-236 55-155 (1135)
46 PRK09467 envZ osmolarity senso 95.3 0.039 8.4E-07 61.8 7.6 32 154-185 351-382 (435)
47 TIGR02966 phoR_proteo phosphat 95.3 0.045 9.7E-07 58.0 7.6 50 122-185 233-282 (333)
48 PRK15347 two component system 95.3 0.037 8E-07 68.4 7.8 49 122-185 517-565 (921)
49 PTZ00108 DNA topoisomerase 2-l 95.2 0.071 1.5E-06 68.1 10.0 134 121-278 60-204 (1388)
50 COG0187 GyrB Type IIA topoisom 95.2 0.05 1.1E-06 63.7 7.8 165 119-310 37-211 (635)
51 PRK10337 sensor protein QseC; 94.9 0.055 1.2E-06 61.0 7.3 46 122-185 356-401 (449)
52 PRK11466 hybrid sensory histid 94.9 0.061 1.3E-06 66.6 8.0 72 122-226 565-636 (914)
53 PRK15053 dpiB sensor histidine 94.9 0.062 1.3E-06 62.3 7.7 104 122-278 436-539 (545)
54 PRK11091 aerobic respiration c 94.9 0.082 1.8E-06 64.4 9.0 87 122-236 402-493 (779)
55 TIGR02956 TMAO_torS TMAO reduc 94.7 0.094 2E-06 65.2 9.1 74 122-226 583-657 (968)
56 PRK10841 hybrid sensory kinase 94.7 0.18 3.9E-06 63.1 11.4 86 122-236 566-655 (924)
57 PHA02569 39 DNA topoisomerase 94.6 0.036 7.8E-07 65.8 4.8 157 121-308 48-222 (602)
58 TIGR03785 marine_sort_HK prote 94.3 0.11 2.3E-06 63.1 8.1 79 122-228 601-679 (703)
59 PRK11360 sensory histidine kin 94.3 0.12 2.5E-06 59.6 8.0 49 122-184 504-553 (607)
60 PRK13837 two-component VirA-li 94.2 0.28 6E-06 60.6 11.6 88 122-244 564-670 (828)
61 PRK04069 serine-protein kinase 94.0 0.059 1.3E-06 53.2 4.3 88 120-234 44-131 (161)
62 PRK11107 hybrid sensory histid 94.0 0.14 3E-06 63.3 8.4 86 122-236 412-506 (919)
63 TIGR01925 spIIAB anti-sigma F 94.0 0.17 3.8E-06 47.8 7.3 46 121-177 42-87 (137)
64 PRK10618 phosphotransfer inter 93.9 0.34 7.4E-06 60.4 11.5 93 122-245 569-668 (894)
65 PRK10490 sensor protein KdpD; 93.9 0.14 3E-06 63.8 8.2 50 122-185 782-831 (895)
66 PRK09835 sensor kinase CusS; P 93.5 0.13 2.8E-06 58.4 6.4 49 122-184 379-427 (482)
67 PTZ00109 DNA gyrase subunit b; 93.5 0.082 1.8E-06 64.6 4.9 169 120-309 131-357 (903)
68 PRK03660 anti-sigma F factor; 93.5 0.22 4.8E-06 47.5 7.1 48 120-178 41-88 (146)
69 COG3290 CitA Signal transducti 93.4 0.13 2.9E-06 59.4 6.1 72 122-223 431-502 (537)
70 PRK09959 hybrid sensory histid 93.3 0.2 4.4E-06 64.0 8.4 99 122-277 832-935 (1197)
71 COG4191 Signal transduction hi 93.1 0.11 2.3E-06 60.6 4.9 63 99-185 490-552 (603)
72 PF13581 HATPase_c_2: Histidin 92.9 0.14 3E-06 47.6 4.5 81 120-232 33-113 (125)
73 COG0642 BaeS Signal transducti 92.4 0.17 3.7E-06 52.6 4.9 48 121-183 231-278 (336)
74 COG5000 NtrY Signal transducti 92.3 0.32 7E-06 56.9 7.2 52 124-184 606-659 (712)
75 TIGR01924 rsbW_low_gc serine-p 92.1 0.21 4.6E-06 49.2 4.9 88 120-234 44-131 (159)
76 PRK10547 chemotaxis protein Ch 90.8 1.1 2.4E-05 54.1 10.0 53 123-183 390-448 (670)
77 KOG0019 Molecular chaperone (H 89.8 0.0041 9E-08 71.7 -10.9 235 487-735 367-604 (656)
78 PRK13557 histidine kinase; Pro 89.0 1.4 3.1E-05 50.4 8.8 19 166-184 326-344 (540)
79 PRK10600 nitrate/nitrite senso 88.4 0.44 9.5E-06 56.1 4.2 43 122-179 473-515 (569)
80 COG3920 Signal transduction hi 88.2 0.85 1.8E-05 47.6 5.7 60 98-179 113-174 (221)
81 PRK11644 sensory histidine kin 88.1 0.44 9.6E-06 55.4 3.9 42 122-178 414-455 (495)
82 COG0643 CheA Chemotaxis protei 87.9 0.77 1.7E-05 55.8 5.9 128 122-277 436-572 (716)
83 COG2172 RsbW Anti-sigma regula 87.1 1.9 4.1E-05 42.2 7.0 84 120-236 42-128 (146)
84 PRK13560 hypothetical protein; 87.0 0.64 1.4E-05 56.1 4.5 45 122-179 715-762 (807)
85 PRK11073 glnL nitrogen regulat 86.5 1.2 2.6E-05 48.3 5.8 48 121-183 240-299 (348)
86 COG4251 Bacteriophytochrome (l 86.3 2 4.3E-05 50.8 7.6 75 154-245 657-737 (750)
87 COG4585 Signal transduction hi 85.3 0.63 1.4E-05 51.6 3.0 46 121-181 282-327 (365)
88 COG3850 NarQ Signal transducti 84.3 1.2 2.7E-05 51.6 4.7 43 122-179 485-527 (574)
89 KOG0787 Dehydrogenase kinase [ 83.8 3.3 7.1E-05 46.3 7.5 123 120-282 262-384 (414)
90 COG5002 VicK Signal transducti 76.7 5.2 0.00011 44.5 6.1 56 154-223 362-419 (459)
91 COG2205 KdpD Osmosensitive K+ 74.0 6.5 0.00014 48.1 6.5 53 122-188 779-831 (890)
92 PRK10935 nitrate/nitrite senso 73.6 3.7 8E-05 47.7 4.5 42 122-178 475-517 (565)
93 KOG1845 MORC family ATPases [C 72.6 2.7 5.9E-05 51.1 3.0 94 122-236 150-246 (775)
94 COG4192 Signal transduction hi 70.8 8.9 0.00019 44.0 6.3 47 122-183 568-617 (673)
95 COG2972 Predicted signal trans 66.5 8.8 0.00019 44.2 5.4 56 116-183 348-405 (456)
96 PRK13559 hypothetical protein; 63.1 7.8 0.00017 42.3 4.0 44 122-178 271-318 (361)
97 KOG0355 DNA topoisomerase type 51.5 24 0.00052 43.2 5.6 125 122-275 57-192 (842)
98 COG4564 Signal transduction hi 47.1 21 0.00046 39.5 3.9 59 114-183 351-409 (459)
99 COG3851 UhpB Signal transducti 46.8 22 0.00047 39.9 4.0 29 150-178 427-455 (497)
100 PF06112 Herpes_capsid: Gammah 41.2 30 0.00065 33.9 3.6 38 699-736 16-62 (147)
101 KOG1845 MORC family ATPases [C 37.9 27 0.00058 42.9 3.3 51 167-236 2-53 (775)
102 COG2865 Predicted transcriptio 37.3 40 0.00086 39.2 4.4 87 115-227 267-357 (467)
103 PF04122 CW_binding_2: Putativ 36.2 99 0.0021 27.2 5.9 57 554-613 24-81 (92)
104 COG1578 Uncharacterized conser 31.9 2E+02 0.0043 31.3 8.1 26 584-609 153-183 (285)
105 KOG0541 Alkyl hydroperoxide re 23.5 85 0.0018 31.4 3.4 37 574-610 70-110 (171)
No 1
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-168 Score=1340.12 Aligned_cols=651 Identities=48% Similarity=0.856 Sum_probs=604.4
Q ss_pred CCcccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCC
Q 004444 94 PLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSG 173 (753)
Q Consensus 94 ~~e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 173 (753)
.+++|.||++++|||+||+|+||+|++|||||||+||+||++|+|+++++++..++...++.|.|..|+.++.|.|.|.|
T Consensus 71 kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtG 150 (785)
T KOG0020|consen 71 KAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTG 150 (785)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEeccc
Confidence 57899999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CCCCHHHHHHHHhHhhhcchhhHHHHhhccccC-CCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCC
Q 004444 174 IGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDA-GGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANAS 252 (753)
Q Consensus 174 iGMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~-~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~ 252 (753)
||||++||++||||||+||+.+|+.++++..+. +.-.++||||||||||+|+|||+|+|+|++ +++.+|+|+|++.
T Consensus 151 iGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKh-NdD~QyiWESdan-- 227 (785)
T KOG0020|consen 151 IGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKH-NDDSQYIWESDAN-- 227 (785)
T ss_pred CCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEecc-CCccceeeeccCc--
Confidence 999999999999999999999999999864211 112379999999999999999999999998 7889999999876
Q ss_pred ceEEEecCCCCCCCCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEeccccccccccCCCCccccc--c-cc
Q 004444 253 SYTIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAETN--K-DK 329 (753)
Q Consensus 253 ~y~i~~~~~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~--~-~~ 329 (753)
+|+|.+++++ ++.+|||.|+|||+++..+|+++++|+++|++||+||.|||++|..++.+.+++.+++|+... + ++
T Consensus 228 ~FsvseDprg-~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lWsSKt~~~E~pvEEe~~t~e~~~ed~ 306 (785)
T KOG0020|consen 228 SFSVSEDPRG-NTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLWSSKTVEVEVPVEEEEETEEDSTEDK 306 (785)
T ss_pred ceeeecCCCC-CcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeeeeccceeeecccccccccccccccch
Confidence 8999999998 789999999999999999999999999999999999999999999998888888777665432 1 11
Q ss_pred hh--hH-HHhhhcccceeeeeccccccccCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCceeeeeecccceeeEEEEEe
Q 004444 330 QD--ET-AEKKKKTKTVVERYWDWELTNETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYV 406 (753)
Q Consensus 330 ~~--~~-~~~~~~~~~~~~~~~~~e~iN~~~piW~r~~~~v~~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyi 406 (753)
++ ++ ++++.|+|+|.+++|+|+.+|..+|||+|+|++|+++||..||+++++++.+|++|+||++||.+.|++||||
T Consensus 307 ea~vEEee~EKpKTKKV~kT~wdWel~NdvKpIW~R~p~eV~EdEYt~FYkSlsKds~dPma~~HF~aEGeVtFksiLyV 386 (785)
T KOG0020|consen 307 EAAVEEEEEEKPKTKKVEKTVWDWELLNDVKPIWLRKPKEVTEDEYTKFYKSLSKDSTDPMAYIHFTAEGEVTFKSILYV 386 (785)
T ss_pred hhhhhhhhhccccccchhhcchhhhhhcccchhhccCchhcchHHHHHHHHhhhccccCccceeeeeccccEEEEEEEEe
Confidence 11 11 2335688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCccccC-CCCcCeEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHH
Q 004444 407 PAVAPMGKDDLIN-PKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKA 485 (753)
Q Consensus 407 P~~~p~~~~~~~~-~~~~~i~LYv~rVfI~d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~l~~kv 485 (753)
|..+|-++|+... ....+|+|||+||||+|++. +++|+||+||||||||+|||||||||+||++++|+.|++.|++|+
T Consensus 387 P~~~P~~lf~~Yg~~~~dniKLYVrrVFItDeF~-dmmPkYLsFikGvVDSDdLPLNVSrE~LQQHkllKvIkKKLvrK~ 465 (785)
T KOG0020|consen 387 PKKAPRDLFDEYGSKKSDNIKLYVRRVFITDEFH-DMMPKYLSFIKGVVDSDDLPLNVSRETLQQHKLLKVIKKKLVRKV 465 (785)
T ss_pred CCCCchHHHHHhccccccceeEEEEEEEecchHH-HHhHHHHHHHhhccCcCcCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987432 55689999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCChHHHHH-HHHHHhHHhhhcccCCccChhhccCccceeeccCCCcccCHHHHHhhcCCCCceEEEEecC
Q 004444 486 FDMILGISMSENRADYEK-FWENFGKYLKMGCIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAAD 564 (753)
Q Consensus 486 ~~~L~~la~~~d~e~y~~-f~~~fg~~lK~G~~eD~~~~e~l~~LLrF~Ss~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~ 564 (753)
++||++++. ++|.. ||++||.+||.|+++|+.||..|++||||+||+++++.+||++|++|||+.|+.|||++|.
T Consensus 466 LDmikKia~----e~~~d~FW~EFgtniKLGviED~sNr~rLAKLLrFqss~~~~~~TsLdqYveRMK~kQ~~IyymaGs 541 (785)
T KOG0020|consen 466 LDMIKKIAG----EKYDDIFWKEFGTNIKLGVIEDPSNRTRLAKLLRFQSSNHPTKITSLDQYVERMKEKQDKIYYMAGS 541 (785)
T ss_pred HHHHHHhhc----cccchHHHHHhccceeeeeeeCcccHHHHHHHHhhhccCCCCCcccHHHHHHHHhhccccEEEecCC
Confidence 999999996 57777 9999999999999999999999999999999998899999999999999999999999999
Q ss_pred CHHHHhcChhHHHhhhcCceEEEecCCCcHHHHHHhhhcCCcceEeccccccCcCCCchHHH--HhhHHHHHHHHHHHHH
Q 004444 565 SVASARNTPFLEKLLEKDLEVLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGEKNEEKE--KVMKEEFGQTCDWIKK 642 (753)
Q Consensus 565 ~~~~~~~sp~~E~~~~kg~eVL~l~dpiDE~~l~~L~~y~~~~f~~V~~~~l~l~~~~e~~~--~~~~~e~~~L~~~lk~ 642 (753)
|+.+++.|||+|.+.++||||||+|+|+||+|||.|.+|+|++|++|.++++.+++.+..++ +..+++|++|++|+|.
T Consensus 542 sr~e~E~sPfvERLlkKGyEVi~ltepVDEyciqalpe~d~KkFQNVaKEG~k~~~~eK~Ke~~e~l~~~FepL~~W~k~ 621 (785)
T KOG0020|consen 542 SRKEVEKSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKKFQNVAKEGVKFDKSEKTKESHEALEEEFEPLTKWLKD 621 (785)
T ss_pred cHhhhccCcHHHHHHhcCceEEEEcchhHHHHHHhhhhhcchhHhHHHhhhcccCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999987665555 4557889999999998
Q ss_pred -HhCCceeEEEEeecCCCCCeEEEecCCCchHHHHHHHHHhccC---CCCccccccCceeEEECCCChHHHHHHhhhcCC
Q 004444 643 -RLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVG---DTSSMEFMRGRRVFEINPEHPIIQNLNAASKNC 718 (753)
Q Consensus 643 -~L~~kV~~V~vS~rL~~sPa~lv~~e~g~s~~Merimkaq~~~---~~~~~~~~~~k~~LEINp~HpLIk~L~~~~~~~ 718 (753)
+|.++|.++.||+||++|||++|++.+|||.+|+|||++|+.+ +....-|+.++++|||||.||||+.|+.+..++
T Consensus 622 ~alkd~ieka~vSqrL~~spcalVas~~GwsgNmERimksqa~~~~kD~~~~~Y~~qKkt~EINPRHPlirell~Ri~ad 701 (785)
T KOG0020|consen 622 KALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIMKSQAYQKSKDPSKNYYASQKKTFEINPRHPLIRELLRRIAAD 701 (785)
T ss_pred hHHHHHHHHHHHHHHhccCchhhhhhhccccccHHHHHHHhhhhccCCchhhHHhccCceeeeCCCChHHHHHHHHhhcC
Confidence 5789999999999999999999999999999999999999875 333334677899999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCccHHHHHhhC
Q 004444 719 PDDNDALRVVDLLYDAALVSSGFTVKSGRAWQQDI 753 (753)
Q Consensus 719 ~~d~~~~~l~~~Lyd~AlL~~G~~~edp~~fa~ri 753 (753)
+.|+.+++.|.+||++|.|.+||.+.|+..|+.||
T Consensus 702 eeD~t~~d~A~lmf~TAtlrSGf~L~d~~~fadrI 736 (785)
T KOG0020|consen 702 EEDETVKDTAVLMFETATLRSGFILQDTKDFADRI 736 (785)
T ss_pred cccchHHHHHHHHHHHHHhhcCccccchHHHHHHH
Confidence 99999999999999999999999999999999986
No 2
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=1.1e-164 Score=1423.67 Aligned_cols=646 Identities=45% Similarity=0.797 Sum_probs=579.4
Q ss_pred cccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCC
Q 004444 96 EKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIG 175 (753)
Q Consensus 96 e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiG 175 (753)
|+|+||+|+++||+||+++||||++||||||||||+|||+++|+++++++.+.+...++.|+|..|.++++|+|.|||+|
T Consensus 3 e~~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiG 82 (701)
T PTZ00272 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIG 82 (701)
T ss_pred ceEecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCC
Confidence 78999999999999999999999999999999999999999999999999877667778999999988999999999999
Q ss_pred CCHHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceE
Q 004444 176 MTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYT 255 (753)
Q Consensus 176 Mt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~ 255 (753)
||.+||.++|||||+||++.|+++++.+ .+.++|||||||||||||||++|+|+||+. .+.+|.|+|+|+ |.|+
T Consensus 83 Mt~edl~~~LgtIa~SGt~~f~~~~~~~----~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~-~~~~~~W~s~~~-g~y~ 156 (701)
T PTZ00272 83 MTKADLVNNLGTIARSGTKAFMEALEAG----GDMSMIGQFGVGFYSAYLVADRVTVTSKNN-SDESYVWESSAG-GTFT 156 (701)
T ss_pred CCHHHHHHHhhhhhhcchHHHHHHhhcc----CCccccCCCCcceEEEEEeccEEEEEEecC-CCceEEEEECCC-CcEE
Confidence 9999999999999999999999887643 467899999999999999999999999985 457999999998 9999
Q ss_pred EEecCCCCCCCCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEeccccccccccCCCCc--cccc-------
Q 004444 256 IREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDP--AETN------- 326 (753)
Q Consensus 256 i~~~~~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~~~~~~~~~~~~~~~--~~~~------- 326 (753)
|.+.+. ...++||+|+|||+++..+|++.++|+++|++||+||+|||+++..++.+.++++++++ +++.
T Consensus 157 i~~~~~--~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (701)
T PTZ00272 157 ITSTPE--SDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEEPK 234 (701)
T ss_pred EEeCCC--CCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEEeeccccccccCcchhhhcccccccccccc
Confidence 998764 24589999999999999999999999999999999999999998655443333222110 0000
Q ss_pred ccch-hhHHHhhhcccceeeeeccccccccCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCceeeeeecccceeeEEEEE
Q 004444 327 KDKQ-DETAEKKKKTKTVVERYWDWELTNETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILY 405 (753)
Q Consensus 327 ~~~~-~~~~~~~~~~~~~~~~~~~~e~iN~~~piW~r~~~~v~~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~~~~~lly 405 (753)
+++. ++.+++++|++++++.+++|+++|+++|||+|+|++||+|||++|||+++++|++||+|+||++||+++|+||||
T Consensus 235 ~~~~~~~~~~~~~k~~~~~~~~~~~e~iN~~~~lW~r~~~~i~~eey~~Fyk~~~~~~~~Pl~~ih~~~eg~~~~~~lly 314 (701)
T PTZ00272 235 VEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMF 314 (701)
T ss_pred cccccccccccccccccccccccchhhcccCcCCeecCcccCCHHHHHHHHHHhcCCcCCCceeeeeccCCceeeEEEEE
Confidence 0000 011223445666777889999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCccccCCCCcCeEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHH
Q 004444 406 VPAVAPMGKDDLINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKA 485 (753)
Q Consensus 406 iP~~~p~~~~~~~~~~~~~i~LYv~rVfI~d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~l~~kv 485 (753)
||+.+|+++|+.. ..+++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|+
T Consensus 315 iP~~~~~~~~~~~-~~~~~i~LY~~rVfI~d~~~-~llP~~l~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~i~~~i~~ki 392 (701)
T PTZ00272 315 VPKRAPFDMFEPN-KKRNNIKLYVRRVFIMDNCE-DLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKC 392 (701)
T ss_pred eCCCCccchhhhh-hccCceEEEEeeEEEecchh-hhhHHHHhheeEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHH
Confidence 9999999998752 35689999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCChHHHHHHHHHHhHHhhhcccCCccChhhccCccceeeccCCCcccCHHHHHhhcCCCCceEEEEecCC
Q 004444 486 FDMILGISMSENRADYEKFWENFGKYLKMGCIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAADS 565 (753)
Q Consensus 486 ~~~L~~la~~~d~e~y~~f~~~fg~~lK~G~~eD~~~~e~l~~LLrF~Ss~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~~ 565 (753)
+++|+++|+ ++++|++||++||.+||+|+++|.+|+++|++||||+||.++++++||+||++|||++|+.|||++|+|
T Consensus 393 ~~~l~~la~--~~~~y~~f~~~~g~~lK~G~~~D~~~~~~l~~Llrf~ss~~~~~~~sL~eYv~rmk~~Q~~IYY~~~~s 470 (701)
T PTZ00272 393 LEMFDEVAE--NKEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDS 470 (701)
T ss_pred HHHHHHHhh--CHHHHHHHHHHHhhhhheeeccCHhHHHHHHHhhceeecCCCCceeeHHHHHHhhccCCceEEEEeCCC
Confidence 999999995 689999999999999999999999999999999999999866789999999999999999999999999
Q ss_pred HHHHhcChhHHHhhhcCceEEEecCCCcHHHHHHhhhcCCcceEeccccccCcCCCchHHH--HhhHHHHHHHHHHHHHH
Q 004444 566 VASARNTPFLEKLLEKDLEVLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGEKNEEKE--KVMKEEFGQTCDWIKKR 643 (753)
Q Consensus 566 ~~~~~~sp~~E~~~~kg~eVL~l~dpiDE~~l~~L~~y~~~~f~~V~~~~l~l~~~~e~~~--~~~~~e~~~L~~~lk~~ 643 (753)
++++++|||+|.|+++|||||||+||||||||++|.+|+|++|++|+++++++++.+++++ +..++++++|++|||++
T Consensus 471 ~~~~~~sP~lE~~~~kg~EVL~l~dpiDe~~i~~l~ey~~k~f~sV~~~~~~l~~~~~e~~~~~~~~~~~~~L~~~~k~~ 550 (701)
T PTZ00272 471 KKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEV 550 (701)
T ss_pred HHHHHhChHHHHHHhCCCeEEEeCCcHHHHHHHHHHhcCCCceEecccccccccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988764333222 33455799999999999
Q ss_pred hCCceeEEEEeecCCCCCeEEEecCCCchHHHHHHHHHhccCCCCccccccCceeEEECCCChHHHHHHhhhcCCCCchh
Q 004444 644 LGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDND 723 (753)
Q Consensus 644 L~~kV~~V~vS~rL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLIk~L~~~~~~~~~d~~ 723 (753)
|+++|.+|++|+||++||||||++++|++++|+|||++|++++.....+|..+++|||||+||||++|++++..+++++.
T Consensus 551 L~~kV~~VkvS~RL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~kkiLEINP~HpiIk~L~~~~~~~~~~~~ 630 (701)
T PTZ00272 551 LGDKVEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKA 630 (701)
T ss_pred hCCcccEEEEeccCCCCCeEEEecccchhHHHHHHHHhcccccccccccccCCeEEEECCCCHHHHHHHHHhhcccchHH
Confidence 99999999999999999999999999999999999999976432223455678999999999999999887656666778
Q ss_pred HHHHHHHHHHHHHHhCCCCCccHHHHHhhC
Q 004444 724 ALRVVDLLYDAALVSSGFTVKSGRAWQQDI 753 (753)
Q Consensus 724 ~~~l~~~Lyd~AlL~~G~~~edp~~fa~ri 753 (753)
++++|+||||+|+|++|+.++||++|++|+
T Consensus 631 ~~~la~~LyD~AlL~~G~~leDp~~f~~Ri 660 (701)
T PTZ00272 631 VKDLVFLLFDTSLLTSGFQLEDPTGYAERI 660 (701)
T ss_pred HHHHHHHHHHHHHHhCCCCccCHHHHHHHH
Confidence 999999999999999999999999999985
No 3
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=2.2e-164 Score=1419.84 Aligned_cols=650 Identities=42% Similarity=0.751 Sum_probs=578.2
Q ss_pred CCcccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCC
Q 004444 94 PLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSG 173 (753)
Q Consensus 94 ~~e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 173 (753)
..++++||+|+++||+||+++||||++||||||||||+|||+|+||++++++.+.+...++.|+|..|+++++|+|+|||
T Consensus 64 ~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnG 143 (814)
T PTZ00130 64 GIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTG 143 (814)
T ss_pred ccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECC
Confidence 46899999999999999999999999999999999999999999999999998877778899999999999999999999
Q ss_pred CCCCHHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCc
Q 004444 174 IGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASS 253 (753)
Q Consensus 174 iGMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~ 253 (753)
||||++||.++|||||+||++.|++++++.+ .+..+||||||||||||||||+|+|+||+. ++.++.|+|+|+ |.
T Consensus 144 IGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~---~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~-~~~~~~W~s~g~-g~ 218 (814)
T PTZ00130 144 IGMTKEDLINNLGTIAKSGTSNFLEAISKSG---GDMSLIGQFGVGFYSAFLVADKVIVYTKNN-NDEQYIWESTAD-AK 218 (814)
T ss_pred CCCCHHHHHHHhhhhcccccHHHHHHhhccC---CCcccccccccchhheeeecCEEEEEEcCC-CCceEEEEECCC-Cc
Confidence 9999999999999999999999999887421 457899999999999999999999999985 467899999998 99
Q ss_pred eEEEecCCCCCCCCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEeccccccccccCCCCcccc-cccchhh
Q 004444 254 YTIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAET-NKDKQDE 332 (753)
Q Consensus 254 y~i~~~~~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 332 (753)
|+|++.+++ ...++||+|+|||+++..+|++.++|++||++||+||+|||++++.+...+++++++..+.+ +.+++++
T Consensus 219 y~I~e~~~~-~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~fI~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (814)
T PTZ00130 219 FTIYKDPRG-STLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQFIQYPIYLLHENVYTEEVLADIAKEMENDPNYDSV 297 (814)
T ss_pred EEEEECCCC-CCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhccCCCCEEEccccccccccccccccccccccccccc
Confidence 999998654 35689999999999999999999999999999999999999998755433333221110000 0000000
Q ss_pred ----HHHhhhcccceeeeeccccccccCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCceeeeeecccceeeEEEEEeeC
Q 004444 333 ----TAEKKKKTKTVVERYWDWELTNETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPA 408 (753)
Q Consensus 333 ----~~~~~~~~~~~~~~~~~~e~iN~~~piW~r~~~~v~~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~ 408 (753)
.++++++++++++.+++|+++|+.+|||+|++++||+|+|++|||++++++++||+|+||++||+++|+||||||+
T Consensus 298 e~~~~~~~~~k~k~v~~~~~~~e~vN~~~aiW~r~~~eit~EeY~eFYk~l~~~~~dPl~~iH~~~Eg~~~~~~LLYIP~ 377 (814)
T PTZ00130 298 KVEETDDPNKKTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDYKKFFSVLSGFNDEPLYHIHFFAEGEIEFKCLIYIPS 377 (814)
T ss_pred cccccccccccccccccceeeeeeeccCCCcccCCcccCCHHHHHHHHHHhcCCccCCceeeeeccCCCeeEEEEEEecC
Confidence 0112345566777788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCCCCcCeEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHH
Q 004444 409 VAPMGKDDLINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDM 488 (753)
Q Consensus 409 ~~p~~~~~~~~~~~~~i~LYv~rVfI~d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~l~~kv~~~ 488 (753)
.+|+++|... ..+++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++|++.|++|++++
T Consensus 378 ~ap~~~~~~~-~~~~~ikLYvrrVfI~d~~~-dLLP~wL~FVkGVVDSeDLPLNVSRE~LQ~n~~l~~Irk~l~kkil~~ 455 (814)
T PTZ00130 378 RAPSINDHLF-TKQNSIKLYVRRVLVADEFV-EFLPRYMSFVKGVVDSDDLPLNVSREQLQQNKILKAVSKRIVRKILDT 455 (814)
T ss_pred CCccchhhhh-hccCceEEEEeeEEeecchh-hhhhHHHhhhEEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHH
Confidence 9999776521 35799999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcc----------------------------CChHHHHHHHHHHhHHhhhcccCCccChhhccCccceeeccCCCc
Q 004444 489 ILGISMS----------------------------ENRADYEKFWENFGKYLKMGCIDDRENHKPLAPLLRFFSSQSEDE 540 (753)
Q Consensus 489 L~~la~~----------------------------~d~e~y~~f~~~fg~~lK~G~~eD~~~~e~l~~LLrF~Ss~~~~~ 540 (753)
|+++++. ++|++|.+||++||.+||+||++|..|+++|++||||+||++ ++
T Consensus 456 L~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~e~Y~kF~~~fg~~LK~Gv~eD~~nre~l~~LLrF~Ss~~-~~ 534 (814)
T PTZ00130 456 FRTLYKEGKKNKETLRAELAKETDEEKKKEIQKKINEPSTYKLIYKEYRKYLKTGCYEDDINRNKIVKLLLFKTMLH-PK 534 (814)
T ss_pred HHHHHhhccccchhcccccccccccccccccccccccHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhheeeeCCC-CC
Confidence 9999861 468999999999999999999999999999999999999975 37
Q ss_pred ccCHHHHHhhcCCCCceEEEEecCCHHHHhcChhHHHhhhcCceEEEecCCCcHHHHHHhhhcCCcceEeccccccCcCC
Q 004444 541 MISLDEYVENMKPEQKDIYFIAADSVASARNTPFLEKLLEKDLEVLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGE 620 (753)
Q Consensus 541 ~~SL~eYv~rmk~~Qk~IYY~~~~~~~~~~~sp~~E~~~~kg~eVL~l~dpiDE~~l~~L~~y~~~~f~~V~~~~l~l~~ 620 (753)
++||+||++||+++|+.|||++|++++++++|||+|.|+++|||||||++||||+|+++|.+|+|++|++|++++++++.
T Consensus 535 ~~SL~eYv~rMke~Qk~IYY~t~~s~~~~~~SP~lE~~~~kg~EVL~l~d~iDE~~l~~L~e~~gk~~~sV~~~~~~~~~ 614 (814)
T PTZ00130 535 SISLDTYIENMKPDQKFIYYASGDSYEYLSKIPQLQIFKKKNIDVVFLTESVDESCVQRVQEYDGKKFKSIQKGEITFEL 614 (814)
T ss_pred ccCHHHHHhhhccCCeEEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHHHHHHHHhcCceEEEeccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred CchHHH--HhhHHHHHHHHHHHHHHhCCceeEEEEeecCCCCCeEEEecCCCchHHHHHHHHHhccCCCCccccccCcee
Q 004444 621 KNEEKE--KVMKEEFGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRV 698 (753)
Q Consensus 621 ~~e~~~--~~~~~e~~~L~~~lk~~L~~kV~~V~vS~rL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~ 698 (753)
.+++++ +..++++++|++|+++.|+++|.+|++|+||++||||||++++|||++|+|||++|.+. +....++..+++
T Consensus 615 ~~~e~~~~~~~~~~~~~L~~~~k~~L~~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~~-~~~~~~~~~k~i 693 (814)
T PTZ00130 615 TEDEKKKEEKVKKMYKALIDVISDTLRNQIFKVEISRRLVDAPCAVVSTEWGLSGQMEKLMKINVNN-SDQIKAMSGQKI 693 (814)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHhcCcccEEEEeccCCCCCcEEEecCccccHHHHHHHHHhhcc-ccccccccCCeE
Confidence 332222 33345699999999999999999999999999999999999999999999999998642 222245568999
Q ss_pred EEECCCChHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHhCCCCCccHHHHHhhC
Q 004444 699 FEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTVKSGRAWQQDI 753 (753)
Q Consensus 699 LEINp~HpLIk~L~~~~~~~~~d~~~~~l~~~Lyd~AlL~~G~~~edp~~fa~ri 753 (753)
|||||+||||++|+.+...+++++.++++|++|||+|+|++|+.++||+.|++||
T Consensus 694 LEINp~Hpii~~L~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~l~DP~~fa~ri 748 (814)
T PTZ00130 694 LEINPDHPIMIDLLKRSVSNPKDSQLTESIKIIYQSAKLASGFDLEDTADLAQIV 748 (814)
T ss_pred EEECCCCHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 9999999999999876545566667999999999999999999999999999986
No 4
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-161 Score=1351.22 Aligned_cols=607 Identities=44% Similarity=0.763 Sum_probs=569.1
Q ss_pred CCcccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCC
Q 004444 94 PLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSG 173 (753)
Q Consensus 94 ~~e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 173 (753)
..+++.||+|+++||+||++||||||+||||||||||+|||+|+||.++++|...+..++++|+|.+|+++++|+|+|||
T Consensus 3 ~~e~~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNG 82 (623)
T COG0326 3 EQETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNG 82 (623)
T ss_pred chhhhhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCC
Confidence 45889999999999999999999999999999999999999999999999999888888899999999999999999999
Q ss_pred CCCCHHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCc
Q 004444 174 IGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASS 253 (753)
Q Consensus 174 iGMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~ 253 (753)
||||++|++++|||||+||++.|++.+.+++ ++.++||||||||||||||||+|+|+|++++.+.++.|+|+|+ |.
T Consensus 83 IGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~---~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~-g~ 158 (623)
T COG0326 83 IGMTKDEVIENLGTIAKSGTKEFLESLSEDQ---KDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGE-GE 158 (623)
T ss_pred CCCCHHHHHHHHHHhhhccHHHHHHHhcccc---ccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCC-Cc
Confidence 9999999999999999999999999987642 5789999999999999999999999999988888999999999 99
Q ss_pred eEEEecCCCCCCCC-CccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEeccccccccccCCCCcccccccchhh
Q 004444 254 YTIREETNPEKLLP-RGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAETNKDKQDE 332 (753)
Q Consensus 254 y~i~~~~~~~~~~~-~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (753)
|+|++++.. + +||+|+|||+++..+|++.++|+++|++||.||++||++.+++.. ++
T Consensus 159 ytv~~~~~~----~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~------~~------------ 216 (623)
T COG0326 159 YTVEDIDKE----PRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEK------DE------------ 216 (623)
T ss_pred eEEeeccCC----CCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEEeeeccc------cc------------
Confidence 999998764 5 699999999999999999999999999999999999999765421 00
Q ss_pred HHHhhhcccceeeeeccccccccCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCceeeeeecccceeeEEEEEeeCCCCC
Q 004444 333 TAEKKKKTKTVVERYWDWELTNETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPAVAPM 412 (753)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~e~iN~~~piW~r~~~~v~~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~ 412 (753)
...+|++||+++|||+|+++++++|+|.+||++++++|++||+|+|+++||.+++++|||||+.+||
T Consensus 217 -------------~~~~~e~iN~~~alW~r~ksei~~eeY~eFYk~~~~d~~~Pl~~~h~~~EG~~ey~~ll~iP~~aPf 283 (623)
T COG0326 217 -------------EVIEWETINKAKALWTRNKSEITDEEYKEFYKHLAHDFDDPLLWIHNKVEGRLEYTALLFIPSKAPF 283 (623)
T ss_pred -------------cchhHHHhccccCcccCChhhCChHHHHHHHHHhhcccCCCeEEEecccccceEEEEEEEccCCCCc
Confidence 0236899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCcCeEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHhh
Q 004444 413 GKDDLINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGI 492 (753)
Q Consensus 413 ~~~~~~~~~~~~i~LYv~rVfI~d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~l~~kv~~~L~~l 492 (753)
++|+. ..++|++||||||||||+|. +|||+||+||||||||+|||||||||+||+|++++.||+.|++||+++|++|
T Consensus 284 dl~~~--~~k~glkLYv~rVfI~Dd~~-~llP~yl~Fv~GvIDS~DLpLNvSRE~LQ~n~~l~~Irk~l~kkvl~~L~~L 360 (623)
T COG0326 284 DLFRR--DRKRGLKLYVNRVFIMDDAE-DLLPNYLRFVRGVIDSEDLPLNVSREILQQNRILAAIRKALTKKVLSMLEKL 360 (623)
T ss_pred ccccc--cccCCcEEEEeeeEEeCChh-hhhhHHHhhheeeeecCCCCcccCHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99986 57899999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHHHhHHhhhcccCCccChhhccCccceeec-cCCCcccCHHHHHhhcCCCCceEEEEecCCHHHHhc
Q 004444 493 SMSENRADYEKFWENFGKYLKMGCIDDRENHKPLAPLLRFFSS-QSEDEMISLDEYVENMKPEQKDIYFIAADSVASARN 571 (753)
Q Consensus 493 a~~~d~e~y~~f~~~fg~~lK~G~~eD~~~~e~l~~LLrF~Ss-~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~~~~~~~~ 571 (753)
|+ ++||+|.+||++||.+||+|+++|.+|+++|++||||.|| .+.++++||+||++||+++|+.|||++|++..++++
T Consensus 361 a~-~~~e~y~~f~~~fg~~LKeG~~eD~~n~e~l~~lLrf~St~~~~~~~~sl~eYv~rmke~q~~IyY~tges~~~~~~ 439 (623)
T COG0326 361 AK-DDPEKYRKFWKQFGLVLKEGLYEDFENKEKLLDLLRFRSTSDSGEKTVSLEEYVSRMKEGQKQIYYITGESYQAAKG 439 (623)
T ss_pred Hh-cCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhEecccCCCccCcccHHHHHHhcccccceeEEeccccHHHHhc
Confidence 99 8999999999999999999999999999999999999995 344789999999999999999999999999999999
Q ss_pred ChhHHHhhhcCceEEEecCCCcHHHHHHhhhcCCcceEeccccccCcCCCchH--HH-HhhHHHHHHHHHHHHHHhCCce
Q 004444 572 TPFLEKLLEKDLEVLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGEKNEE--KE-KVMKEEFGQTCDWIKKRLGDKV 648 (753)
Q Consensus 572 sp~~E~~~~kg~eVL~l~dpiDE~~l~~L~~y~~~~f~~V~~~~l~l~~~~e~--~~-~~~~~e~~~L~~~lk~~L~~kV 648 (753)
||++|.++++|||||||+|+||++++..+.+|+|++|++|+++++++....++ .. ++.+.++++|++++|+.|+++|
T Consensus 440 sP~lE~~k~kgieVL~l~d~iDe~~l~~~~e~egk~~~~i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~L~~~v 519 (623)
T COG0326 440 SPHLELFKAKGIEVLLLTDRIDEFMLTMLPEFEGKPFKSITKGDLDLELLEEEDEADSEEEKKEFKPLLERVKEILGDKV 519 (623)
T ss_pred CchHHHHHhcCcEEEecCccchHHHhhhhhhccCCcceeeccccccccccchhhhhhhHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999887765443 22 4556679999999999999999
Q ss_pred eEEEEeecCCCCCeEEEecCCCchHHHHHHHHHhccCCCCccccccCceeEEECCCChHHHHHHhhhcCCCCchhHHHHH
Q 004444 649 ASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVV 728 (753)
Q Consensus 649 ~~V~vS~rL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLIk~L~~~~~~~~~d~~~~~l~ 728 (753)
.+|++|+||+++|||++.+..+++.+|+|+|++|++..+ ..+++|||||+||||++|.... +.+.++++|
T Consensus 520 k~Vr~s~rl~dspa~l~~~~~~~~~~m~r~l~~~~~~~~------~~k~ilEiNp~h~lv~~L~~~~----d~~~~~~~~ 589 (623)
T COG0326 520 KDVRLSHRLTDSPACLTTDGADLSTQMERLLKAQGQEVP------ESKKILEINPNHPLVKKLASLE----DEASVADLV 589 (623)
T ss_pred ceeEeecccCCCcceeecCccchhHHHHHHHHhccccCC------ccccceeeCcccHHHHHHHhcc----cHHHHHHHH
Confidence 999999999999999999999999999999999876432 4789999999999999999875 456799999
Q ss_pred HHHHHHHHHhCCCCCccHHHHHhhC
Q 004444 729 DLLYDAALVSSGFTVKSGRAWQQDI 753 (753)
Q Consensus 729 ~~Lyd~AlL~~G~~~edp~~fa~ri 753 (753)
++|||+|+|++|++++||..|++|+
T Consensus 590 ~llydqAll~eg~~~~dp~~F~~rl 614 (623)
T COG0326 590 ELLYDQALLAEGGPLEDPAAFIERL 614 (623)
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHH
Confidence 9999999999999999999999985
No 5
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-161 Score=1329.14 Aligned_cols=602 Identities=46% Similarity=0.794 Sum_probs=577.4
Q ss_pred CCCcccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeC
Q 004444 93 PPLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDS 172 (753)
Q Consensus 93 ~~~e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~Dn 172 (753)
.+.|+|.||+++++||+++++++||++++||||||+||+||++|+||.++++|... .+++.|+|.+|+++++|+|.|+
T Consensus 32 ~~~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~--~~~l~I~i~~nk~~~tlti~Dt 109 (656)
T KOG0019|consen 32 EPQETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKA--LPELEIRIITNKDKRTITIQDT 109 (656)
T ss_pred ccccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCcccc--ccceeEEeccCCCcceEEEEec
Confidence 45689999999999999999999999999999999999999999999999999865 7789999999999999999999
Q ss_pred CCCCCHHHHHHHHhHhhhcchhhHHHHhhc-cccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCC
Q 004444 173 GIGMTQQDLVDCLGTIAQSGTAKFLKAMKD-SKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANA 251 (753)
Q Consensus 173 GiGMt~~el~~~l~tIa~Sg~~~f~~~~~~-~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~ 251 (753)
|||||++||.++|||||+||++.|++++++ + .+.++||||||||||+|||||+|+|+|++ ..+.++.|+++++
T Consensus 110 GIGMTk~dLvnnLGTIAkSGtK~Fmealkea~----ad~~~IGQFGvGFYSaylVAdkV~V~tk~-~~~e~y~Wes~~~- 183 (656)
T KOG0019|consen 110 GIGMTKEDLVNNLGTIAKSGSKAFLEALKEAE----AESNLIGQFGVGFYSAFMVADRVVVTTRH-PADEGLQWTSNGR- 183 (656)
T ss_pred CCCcCHHHHHhhhhhhhhcccHHHHHHHHhcc----cchhhhhhcccchhhhhhhhheeEEeecc-CCCcceeeecCCC-
Confidence 999999999999999999999999999994 4 78899999999999999999999999999 4566999999999
Q ss_pred CceEEEecCCCCCCCCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEeccccccccccCCCCcccccccchh
Q 004444 252 SSYTIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAETNKDKQD 331 (753)
Q Consensus 252 ~~y~i~~~~~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (753)
|+|+|...++ ..+||+|+|||++++.+|+++.||+++|+|||+||.|||++++
T Consensus 184 gs~~v~~~~~----~~rGTki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~~----------------------- 236 (656)
T KOG0019|consen 184 GSYEIAEASG----LRTGTKIVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLNG----------------------- 236 (656)
T ss_pred CceEEeeccC----ccccceEEeeehhhhhhhccHhHHHHHHhhccccccccchhhh-----------------------
Confidence 9999998764 6999999999999988999999999999999999999999987
Q ss_pred hHHHhhhcccceeeeeccccccccCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCceeeeeecccceeeEEEEEeeCCCC
Q 004444 332 ETAEKKKKTKTVVERYWDWELTNETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPAVAP 411 (753)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~e~iN~~~piW~r~~~~v~~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p 411 (753)
+.+|..+|||+|+|.+||.|||.+|||+++++|++||++.||++||+++|++|||||.++|
T Consensus 237 -------------------ek~N~tKpiW~rnp~dit~eey~eFYksl~ndw~d~lav~hf~~eg~lefrail~vP~rap 297 (656)
T KOG0019|consen 237 -------------------ERVNNLKAIWTMNPKEVNEEEHEEFYKSVSGDWDDPLYVLHFKTDGPLSIRSIFYIPKRAP 297 (656)
T ss_pred -------------------hhhhccCcccccCchhhhHHHHHHHHHhhcccccchhhHhhhccccceEEEEEEeccccCc
Confidence 3399999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCcCeEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHh
Q 004444 412 MGKDDLINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILG 491 (753)
Q Consensus 412 ~~~~~~~~~~~~~i~LYv~rVfI~d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~l~~kv~~~L~~ 491 (753)
+++|+.. ...+||+||+|||||+|+|. +++|+||+||+|||||+|||||+|||+||+++++++||+.|++|++++|.+
T Consensus 298 ~~lF~~~-kk~n~i~Ly~rrv~I~d~~~-~lipe~l~fv~gvVdSeDlPLNiSremlQ~~~i~k~~rk~l~~k~l~~~~e 375 (656)
T KOG0019|consen 298 NSMFDMR-KKKNGIKLYARRVLITDDAG-DLIPEWLRFVRGVVDSEDIPLNLSREMLQENAVLRKLRKVLPQKILEMFQD 375 (656)
T ss_pred chhhhhh-hccCceEEEEEEEecCchhH-HHHHHHhchheeccccccCccchhHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999975 67799999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChHHHHHHHHHHhHHhhhcccCCccChhh-ccCccceeeccCCCcccCHHHHHhhcCCCCceEEEEecCCHHHHh
Q 004444 492 ISMSENRADYEKFWENFGKYLKMGCIDDRENHKP-LAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAADSVASAR 570 (753)
Q Consensus 492 la~~~d~e~y~~f~~~fg~~lK~G~~eD~~~~e~-l~~LLrF~Ss~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~~~~~~~ 570 (753)
++ +|+|+|++||++||++||+||++|.+|+.+ +++||||+||++.++++||++|++||+++|++|||++|+|+.+++
T Consensus 376 ~a--~d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~~a~lLry~ss~s~~~~~Sl~dYv~rm~~~qk~iyyi~~~s~~~~~ 453 (656)
T KOG0019|consen 376 LA--KDAEKYKKFFKNYGLFLKEGIVTASEQQVKEIAKLLRYESSKSGEGATSLDDYVERMREGQKNIYYITAPNRQLAE 453 (656)
T ss_pred Hh--hhHHHHHHHHHHHhhhhhhcccchhhhhhhHHHHHhhhhccccccccccHHHHHHhhcccccceEEeccchhhhhh
Confidence 99 699999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred cChhHHHhhhcCceEEEecCCCcHHHHHHhhhcCCcceEeccccccCcCCCchHHH--HhhHHHHHHHHHHHHHHhCCce
Q 004444 571 NTPFLEKLLEKDLEVLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGEKNEEKE--KVMKEEFGQTCDWIKKRLGDKV 648 (753)
Q Consensus 571 ~sp~~E~~~~kg~eVL~l~dpiDE~~l~~L~~y~~~~f~~V~~~~l~l~~~~e~~~--~~~~~e~~~L~~~lk~~L~~kV 648 (753)
+|||+|.++++|+|||||++||||+++++|.+|++++|++|+++++++++.++++. ++.+++|+.||+|||+.|+++|
T Consensus 454 ~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee~k~efe~lck~mK~iL~~kV 533 (656)
T KOG0019|consen 454 SSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEESKKEFEELCKWMKEILGSKV 533 (656)
T ss_pred cchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHHHHHHHHHHHHHHHHHhcCce
Confidence 99999999999999999999999999999999999999999999999985544333 4556799999999999999999
Q ss_pred eEEEEeecCCCCCeEEEecCCCchHHHHHHHHHhccCCCCccccccCceeEEECCCChHHHHHHhhhcCCCCchhHHHHH
Q 004444 649 ASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVV 728 (753)
Q Consensus 649 ~~V~vS~rL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLIk~L~~~~~~~~~d~~~~~l~ 728 (753)
.+|.+|+||++||||||++++||+++|+|+|+||+..+++..++|.++++|||||+||||+.|.++..+++++ .+++++
T Consensus 534 ekV~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~kk~lEINP~hpivk~L~~~~~~dk~d-~~k~lv 612 (656)
T KOG0019|consen 534 EKVTVNNRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKAKKHLEINPDHPLVKTLRQLRESDKND-TAKDLV 612 (656)
T ss_pred EEEEecCcccCCceEEEecccccchhHHHHHhhhhccccChhhhccccceeeeCCCChHHHHHHHHHhcCcch-hHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887 999999
Q ss_pred HHHHHHHHHhCCCCCccHHHHHhhC
Q 004444 729 DLLYDAALVSSGFTVKSGRAWQQDI 753 (753)
Q Consensus 729 ~~Lyd~AlL~~G~~~edp~~fa~ri 753 (753)
.|||++|+|++||.++||+.|+.||
T Consensus 613 ~llfetALlssGfsl~dP~~~~~ri 637 (656)
T KOG0019|consen 613 EQLYETALISAGFSLDDPQTMVGRI 637 (656)
T ss_pred HHHHHHHHHHcCCCcCChHHHhhHH
Confidence 9999999999999999999999886
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=5.3e-140 Score=1216.50 Aligned_cols=599 Identities=45% Similarity=0.758 Sum_probs=553.4
Q ss_pred CCcccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCC
Q 004444 94 PLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSG 173 (753)
Q Consensus 94 ~~e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 173 (753)
..|+++||+|+++||+||+++||||+++|||||||||+|||+++|+.+++++.......+++|+|.+|+++++|+|+|||
T Consensus 2 ~~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG 81 (613)
T PRK05218 2 AMETGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNG 81 (613)
T ss_pred CcceeehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECC
Confidence 36899999999999999999999999999999999999999999999999888766677889999999988999999999
Q ss_pred CCCCHHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCC-CCCcEEEEeeCCCC
Q 004444 174 IGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPK-SDKQYVWEGEANAS 252 (753)
Q Consensus 174 iGMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~-~~~~~~w~s~~~~~ 252 (753)
+|||++|+..+|++||.||++.|+++++... ..+..+||+|||||||+||||++|+|.||+.+ +..++.|++.++ +
T Consensus 82 ~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~--~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~-~ 158 (613)
T PRK05218 82 IGMTREEVIENLGTIAKSGTKEFLEKLKGDQ--KKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGE-G 158 (613)
T ss_pred CCCCHHHHHHHHHhhccccchhHHHHhhccc--ccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCC-c
Confidence 9999999999999999999999999885321 13568999999999999999999999999966 456999999988 8
Q ss_pred ceEEEecCCCCCCCCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEeccccccccccCCCCcccccccchhh
Q 004444 253 SYTIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAETNKDKQDE 332 (753)
Q Consensus 253 ~y~i~~~~~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (753)
.|++.+.+. .++||+|+|+|+++..+|++.++|+++|++||+|+++||+++++
T Consensus 159 ~~~i~~~~~----~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~~~~----------------------- 211 (613)
T PRK05218 159 EYTIEEIEK----EERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKLEKE----------------------- 211 (613)
T ss_pred eeEEeECCC----CCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEEecc-----------------------
Confidence 999998653 37999999999999999999999999999999999999999642
Q ss_pred HHHhhhcccceeeeeccccccccCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCceeeeeecccceeeEEEEEeeCCCCC
Q 004444 333 TAEKKKKTKTVVERYWDWELTNETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPAVAPM 412 (753)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~e~iN~~~piW~r~~~~v~~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~ 412 (753)
+|+++|+.+|+|+++++++++++|..||+.+++++.+||+|+|++++|++.|+|+||||..+|+
T Consensus 212 ----------------~~~~in~~~~~w~~~~~~i~~~~~~~fy~~~~~~~~~pl~~i~~~~e~~~~~~gll~iP~~~~~ 275 (613)
T PRK05218 212 ----------------EEETINSASALWTRSKSEITDEEYKEFYKHLAHDFDDPLFWIHNNVEGPFEYTGLLYIPKKAPF 275 (613)
T ss_pred ----------------cceeecCCccceecCCccccHHHHHHHhhhhcccccCCcEEEEcccCCceEEEEEEEeCCCCcc
Confidence 2688999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCcCeEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHhh
Q 004444 413 GKDDLINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGI 492 (753)
Q Consensus 413 ~~~~~~~~~~~~i~LYv~rVfI~d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~l~~kv~~~L~~l 492 (753)
++++. ..+++++||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|+++++|++.|++||+++|.++
T Consensus 276 ~~~~~--~~~~~~~lyvn~v~I~d~~~-~lLP~wl~Fv~GVVDs~dLplnvSRE~lq~~~~l~~i~~~l~~kv~~~l~~l 352 (613)
T PRK05218 276 DLFNR--DRKGGLKLYVKRVFIMDDAE-ELLPEYLRFVKGVIDSEDLPLNVSREILQEDRVVKKIRKAITKKVLDELEKL 352 (613)
T ss_pred chhhh--cccccEEEEECcEEeeCchh-hhchHHHhheEEEeecCCCCCccCHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 98864 46799999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHHHhHHhhhcccCCccChhhccCccceeeccCCCcccCHHHHHhhcCCCCceEEEEecCCHHHHhcC
Q 004444 493 SMSENRADYEKFWENFGKYLKMGCIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAADSVASARNT 572 (753)
Q Consensus 493 a~~~d~e~y~~f~~~fg~~lK~G~~eD~~~~e~l~~LLrF~Ss~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~~~~~~~~s 572 (753)
++ +|+++|++||++||.+||+||++|.+++++|++||||+||+ +++++||+||++||+++|+.|||++++|++++++|
T Consensus 353 a~-~d~~~y~~f~~~~~~~lK~g~~~D~~~~~~~~~lL~f~ts~-~~~~~sL~ey~~rm~~~q~~Iyy~~~~~~~~~~~s 430 (613)
T PRK05218 353 AK-NDREKYEKFWKEFGPVLKEGLYEDFANREKLAKLLRFASTH-EGKYVSLAEYVERMKEGQKKIYYITGDSREAAKNS 430 (613)
T ss_pred Hh-hCHHHHHHHHHHHHHHHHhhhhccHHHHHHHHhhceeeecC-CCCcccHHHHHHhCcCCCceEEEEeCCCHHHHHhC
Confidence 98 89999999999999999999999999999999999999996 57899999999999999999999999999999999
Q ss_pred hhHHHhhhcCceEEEecCCCcHHHHHHhhhcCCcceEeccccccCcCC-Cc-hHHH-HhhHHHHHHHHHHHHHHhCCcee
Q 004444 573 PFLEKLLEKDLEVLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGE-KN-EEKE-KVMKEEFGQTCDWIKKRLGDKVA 649 (753)
Q Consensus 573 p~~E~~~~kg~eVL~l~dpiDE~~l~~L~~y~~~~f~~V~~~~l~l~~-~~-e~~~-~~~~~e~~~L~~~lk~~L~~kV~ 649 (753)
||+|.++++|+||||+++|+|++++++|.+|++++|++|+++++++.+ .+ ++.. +..++++++|++|+++.|+++|.
T Consensus 431 p~~e~~~~~g~eVl~~~~~~De~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~v~ 510 (613)
T PRK05218 431 PHLELFKKKGIEVLLLTDPIDEFWISYLEEFDGKPFKSVARGDLDLGKEDEEEKEEKEEAEEEFKPLLERLKEALGDKVK 510 (613)
T ss_pred hHHHHHHhcCceEEEeCCccHHHHHHHHHHhcCCceEEeeccccccccccchhhhhhhhhHHHHHHHHHHHHHHhcCcce
Confidence 999999999999999999999999999999999999999999988765 11 1111 33456899999999999999999
Q ss_pred EEEEeecCCCCCeEEEecCCCchHHHHHHHHHhccCCCCccccccCceeEEECCCChHHHHHHhhhcCCCCchhHHHHHH
Q 004444 650 SVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVD 729 (753)
Q Consensus 650 ~V~vS~rL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLIk~L~~~~~~~~~d~~~~~l~~ 729 (753)
+|++|+||+++|||++++++|++++|+|+|++|++ +++..+++|||||+||||++|++.. +++.++++|+
T Consensus 511 ~V~~s~rl~~~Pa~~v~~~~~~~~~mer~~~~~~~------~~~~~~~~LeiNp~hplI~~L~~~~----d~~~~~~~~~ 580 (613)
T PRK05218 511 DVRLSHRLTDSPACLVADEGDMSTQMEKLLKAAGQ------EVPESKPILEINPNHPLVKKLADEA----DEAKFKDLAE 580 (613)
T ss_pred EEEEeccCCCCCeEEEeCccchHHHHHHHHHhhhh------cccccceEEEEcCCCHHHHHHHhcc----ChHHHHHHHH
Confidence 99999999999999999999999999999998852 1223689999999999999998743 2345999999
Q ss_pred HHHHHHHHhCCCCCccHHHHHhhC
Q 004444 730 LLYDAALVSSGFTVKSGRAWQQDI 753 (753)
Q Consensus 730 ~Lyd~AlL~~G~~~edp~~fa~ri 753 (753)
+|||+|+|++|+.++||+.|++|+
T Consensus 581 ~Lyd~AlL~~G~~~~d~~~~~~r~ 604 (613)
T PRK05218 581 LLYDQALLAEGGSLEDPAAFVKRL 604 (613)
T ss_pred HHHHHHHHhCCCCccCHHHHHHHH
Confidence 999999999999999999999985
No 7
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=3.9e-130 Score=1124.90 Aligned_cols=564 Identities=22% Similarity=0.328 Sum_probs=495.6
Q ss_pred ccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEE-cCCCcEEEEEeCCCC
Q 004444 97 KYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQT-DKDNGIITITDSGIG 175 (753)
Q Consensus 97 ~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~-d~~~~~l~I~DnGiG 175 (753)
.++||+|+++||++|+++||+|+++|||||||||+|||+++++.. ...+++|+|.+ |.++++|+|+|||+|
T Consensus 2 ~~~Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~--------~~~~~~I~I~~~d~~~~~l~I~DnGiG 73 (601)
T PRK14083 2 SHRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALD--------PTAPGRIRIELTDAGGGTLIVEDNGIG 73 (601)
T ss_pred CccchHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccC--------CCCCceEEEEEccCCCcEEEEEeCCCC
Confidence 479999999999999999999999999999999999999987643 12356788887 888899999999999
Q ss_pred CCHHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceE
Q 004444 176 MTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYT 255 (753)
Q Consensus 176 Mt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~ 255 (753)
||.+++.++|++||+||++.|. +.. .+..+||||||||||+|||||+|+|.|++.+++.++.|++.++ |.|+
T Consensus 74 mt~eel~~~l~~ig~S~k~~~~--~~~-----~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~-g~y~ 145 (601)
T PRK14083 74 LTEEEVHEFLATIGRSSKRDEN--LGF-----ARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKAD-GTYS 145 (601)
T ss_pred CCHHHHHHHHhhhccchhhhhh--hcc-----cccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCC-CceE
Confidence 9999999999999999998753 211 3567999999999999999999999999965677999999988 9999
Q ss_pred EEecCCCCCCCCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEeccccccccccCCCCcccccccchhhHHH
Q 004444 256 IREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAETNKDKQDETAE 335 (753)
Q Consensus 256 i~~~~~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (753)
|++.+. ...++||+|+|+++++..+|+++++|++++++||.||+|||++++++
T Consensus 146 i~~~~~--~~~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l~~~~------------------------- 198 (601)
T PRK14083 146 VRKLET--ERAEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRVEGEK------------------------- 198 (601)
T ss_pred EEeCCC--CCCCCCCEEEEEecCchhhhccHHHHHHHHHHHhccCCCCcccCCce-------------------------
Confidence 998532 24689999999999999999999999999999999999999996421
Q ss_pred hhhcccceeeeeccccccccCCCCcccCCCCCC--HHHHHHHHHHhhcCCCCCceeeeeecccceeeEEEEE-eeCCCCC
Q 004444 336 KKKKTKTVVERYWDWELTNETQPIWLRNPKEVT--TEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILY-VPAVAPM 412 (753)
Q Consensus 336 ~~~~~~~~~~~~~~~e~iN~~~piW~r~~~~v~--~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~~~~~lly-iP~~~p~ 412 (753)
++||+++|||+|++++|| ++||.+||+++++ ++||+|+|+++||+.. +++|| ||+.+|+
T Consensus 199 ---------------~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~--~~Pl~~ih~~~e~~~~-~~~Ly~iP~~~~~ 260 (601)
T PRK14083 199 ---------------GGVNETPPPWTRDYPDPETRREALLAYGEELLG--FTPLDVIPLDVPSGGL-EGVAYVLPYAVSP 260 (601)
T ss_pred ---------------eeecCCCCCccCCccccCccHHHHHHHHHHhcC--CCchheeeecccchhh-eEEEEecCCCCCc
Confidence 679999999999999999 9999999999998 6999999999999875 78887 6999887
Q ss_pred CCccccCCCCcCeEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHhh
Q 004444 413 GKDDLINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGI 492 (753)
Q Consensus 413 ~~~~~~~~~~~~i~LYv~rVfI~d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~l~~kv~~~L~~l 492 (753)
+ .+++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|+++++||+.|++||+++|+++
T Consensus 261 ~-------~~~~v~LY~~rVfI~d~~~-~lLP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~ir~~i~kki~~~L~~l 332 (601)
T PRK14083 261 A-------ARRKHRVYLKRMLLSEEAE-NLLPDWAFFVRCVVNTDELRPTASREALYEDDALAAVREELGEAIRKWLIGL 332 (601)
T ss_pred c-------ccCceEEEeeeeEeecchh-hhhHHHHHHheeeeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 2479999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHHHhHHhhhcccCCccChhhccCccceeeccCCCcccCHHHHHhhcCCCCceEEEEecC-CHHHHhc
Q 004444 493 SMSENRADYEKFWENFGKYLKMGCIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAAD-SVASARN 571 (753)
Q Consensus 493 a~~~d~e~y~~f~~~fg~~lK~G~~eD~~~~e~l~~LLrF~Ss~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~-~~~~~~~ 571 (753)
|+ +||++|++||++||.+||+||++|.+|+++|++||||+||+ +.+||+||++|| +.|||++++ ++++++
T Consensus 333 a~-~d~e~y~~f~~~~g~~lK~g~~~D~~~~~~l~~lL~f~ss~---~~~sL~eY~~r~----~~IyY~~~~~~~~~~~- 403 (601)
T PRK14083 333 AT-TDPERLRRLLAVHHLGVKALASHDDELLRLILPWLPFETTD---GRMTLAEIRRRH----GVIRYTSSVDEFRQLA- 403 (601)
T ss_pred Hh-hCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhceeecCC---CCcCHHHHHHhC----CeEEEEcCHHHHHHHH-
Confidence 98 89999999999999999999999999999999999999996 569999999995 589999995 777765
Q ss_pred ChhHHHhhhcCceEEEecCCCcHHHHHHhhh-cCCcceEeccccccC--cCCCchHHHHhhHHHHHHHHHHHHHHhCCce
Q 004444 572 TPFLEKLLEKDLEVLYLVDPIDEIAVQNLKS-YKEKNFVDISKEDLD--LGEKNEEKEKVMKEEFGQTCDWIKKRLGDKV 648 (753)
Q Consensus 572 sp~~E~~~~kg~eVL~l~dpiDE~~l~~L~~-y~~~~f~~V~~~~l~--l~~~~e~~~~~~~~e~~~L~~~lk~~L~~kV 648 (753)
+.|+++|+|||+|++||||+++++|.+ |++++|++|+++++. +...+ ...++++++|++|++++|++++
T Consensus 404 ----~~~~~kg~eVl~~~~~iDe~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~L~~~~ 475 (601)
T PRK14083 404 ----PIARAQGMGVINGGYTYDSELLERLPRLRPGLTVERLDPAELTDRLEPLT----PEEELALRPFLAEAREVLAPFG 475 (601)
T ss_pred ----HHHHHCCCeEEEeCCccHHHHHHHHHhhCCCCcEEEechhhhhhhccccc----hhhHHHHHHHHHHHHHHhCccc
Confidence 799999999999999999999999998 999999999998763 44322 2234579999999999999975
Q ss_pred eEE-EEeecCCCCCeEEEecCCCchHHHHHHHHHhc-cCCCCc--------cccccCceeEEECCCChHHHHHHhhhcCC
Q 004444 649 ASV-QISNRLSSSPCVLVSAKFGWSANMERLMKAQT-VGDTSS--------MEFMRGRRVFEINPEHPIIQNLNAASKNC 718 (753)
Q Consensus 649 ~~V-~vS~rL~~sPa~lv~~e~g~s~~Merimkaq~-~~~~~~--------~~~~~~k~~LEINp~HpLIk~L~~~~~~~ 718 (753)
.+| ++|+||+++|||++++++ .+|+++|+++. +.++.+ ..++..+++|||||+||||++|+..
T Consensus 476 ~~v~~~s~rl~~~Pa~~v~~e~---~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~LeiN~~hpli~~l~~~---- 548 (601)
T PRK14083 476 CDVVIRHFEPADLPALYLHDRA---AQHSREREEAVEEADDLWADILGSLDESQPAPRARLVLNLRNPLVRRLATL---- 548 (601)
T ss_pred eEEEEEcCCCCCCCEEEEeCch---hHHHHHHHhhhhhcccchhhhhhhhhhcccccCeEEEECCCCHHHHHHHhc----
Confidence 555 778999999999999874 36666665432 111111 1233468999999999999999865
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCc--cHHHHHhhC
Q 004444 719 PDDNDALRVVDLLYDAALVSSGFTVK--SGRAWQQDI 753 (753)
Q Consensus 719 ~~d~~~~~l~~~Lyd~AlL~~G~~~e--dp~~fa~ri 753 (753)
.+++.++++|++|||+|+|++|++++ +|+.|++++
T Consensus 549 ~d~~~~~~~~~~Lyd~AlL~~g~~l~~~e~~~~~~~~ 585 (601)
T PRK14083 549 GDPKLLSRAVEALYVQALLLGHRPLRPAEMALLNRSL 585 (601)
T ss_pred cChHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 24567999999999999999998787 999998864
No 8
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=1.4e-125 Score=1076.19 Aligned_cols=468 Identities=50% Similarity=0.868 Sum_probs=405.9
Q ss_pred CCCCHHHHHHHHHHhcCCCCcCeEEeccccccccccCCCCcccc--c------------ccchh-hH--HHhhhccccee
Q 004444 282 GFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAET--N------------KDKQD-ET--AEKKKKTKTVV 344 (753)
Q Consensus 282 ~~~~~~~i~~lik~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~--~------------~~~~~-~~--~~~~~~~~~~~ 344 (753)
+|+++++|++||+|||+||+|||+++.++..++++++++++.++ . .++.+ ++ +++++++++++
T Consensus 1 eyl~~~klk~lvkkyS~Fi~~PI~l~~~k~~~~ev~~ee~~~~~~~~~~~~~~~~~~~~~e~~~~eee~~~~~~k~k~~~ 80 (531)
T PF00183_consen 1 EYLEEYKLKELVKKYSQFISFPIYLWVEKEEEKEVPDEEEEEEEEEKEEEEKKEEEEEKVEEEDEEEEKEEKKPKTKKVK 80 (531)
T ss_dssp GGGSHHHHHHHHHHHHTTSSSEEEEEEEEEEECCCEHHHHHH---HTT-TT--------SSEEEE----S-TTEEEEECC
T ss_pred CcccHHHHHHHHHhhccccccceeEeeeccccccCCcchhhhhhhhhhhccccccccccccccccccccccccccccccc
Confidence 58999999999999999999999999988777666655533211 0 01111 11 12355677788
Q ss_pred eeeccccccccCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCceeeeeecccceeeEEEEEeeCCCCCCCccccCCCCcC
Q 004444 345 ERYWDWELTNETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPAVAPMGKDDLINPKTKN 424 (753)
Q Consensus 345 ~~~~~~e~iN~~~piW~r~~~~v~~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~ 424 (753)
+++++|+++|+++|||+|+|++||++||++||+.++++|++||+|+||++||+++|+||||||+.+|+++|+.. ..+++
T Consensus 81 ~~~~~~~~vN~~~piW~r~~~eit~eey~~Fyk~l~~~~~~Pl~~iH~~~eg~~~~~~lLyiP~~~p~~~~~~~-~~~~~ 159 (531)
T PF00183_consen 81 ETVWEWEQVNTQKPIWTRDPKEITDEEYKEFYKSLSKDYDDPLFWIHFNAEGPFEFKSLLYIPKRAPFDLFEND-KKKNG 159 (531)
T ss_dssp EEEEEEEECS--S-GGGSSGGGS-HHHHHHHHHHHHTTSS-ESEEEEEEEESSSEEEEEEEEESS-SCCCCSSS-TT--S
T ss_pred cceeecccccccCcccccchhccchHHHHHHHHHhhhcccCchhheeccccccceeeEEEEeCCCCchhhhhhh-hcccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999998764 45789
Q ss_pred eEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHH
Q 004444 425 IRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGISMSENRADYEKF 504 (753)
Q Consensus 425 i~LYv~rVfI~d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~l~~kv~~~L~~la~~~d~e~y~~f 504 (753)
|+||||||||+|+|. +|||+||+||||||||+|||||||||+||+|++|++|++.|++||+++|.+++ +|+++|.+|
T Consensus 160 ikLY~rrVfI~d~~~-~llP~~L~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~~~l~kkvl~~l~~l~--~d~e~y~~f 236 (531)
T PF00183_consen 160 IKLYVRRVFITDNFE-ELLPEYLRFVKGVVDSDDLPLNVSRETLQQNKLLKKIRKKLVKKVLDMLKKLA--KDREKYEKF 236 (531)
T ss_dssp EEEEETTEEEESSCG-GSS-GGGTT-EEEEEESSS-SSCTHHHHHTHHHHHHHHHHHHHHHHHHHHHHH--TSHHHHHHH
T ss_pred ceeeeecccccchhh-cccchhhheeeeeeeccccCCccchhhhhccHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHH
Confidence 999999999999999 99999999999999999999999999999999999999999999999999999 589999999
Q ss_pred HHHHhHHhhhcccCCccChhhccCccceeeccCCCcccCHHHHHhhcCCCCceEEEEecCCHHHHhcChhHHHhhhcCce
Q 004444 505 WENFGKYLKMGCIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAADSVASARNTPFLEKLLEKDLE 584 (753)
Q Consensus 505 ~~~fg~~lK~G~~eD~~~~e~l~~LLrF~Ss~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~~~~~~~~sp~~E~~~~kg~e 584 (753)
|++||.+||+||++|..||++|++||||+||+++++++||++|++||+++|+.|||++|++++++++|||+|+|+++|||
T Consensus 237 ~~~~g~~iK~G~~eD~~n~~kl~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYY~~g~s~~~~~~SP~lE~~k~kG~E 316 (531)
T PF00183_consen 237 WKEFGKFIKEGVIEDFKNREKLAKLLRFESSKSEGKLTSLDEYVERMKEGQKQIYYLTGESREEAEQSPYLEAFKKKGYE 316 (531)
T ss_dssp HHHHHHHHHHHHHH-GGGHHHHHTT-EEEETTTTTSEEEHHHHHHTS-TT-SEEEEEESSSHHHHHTSGGGHHHHHCT--
T ss_pred HHHHhHHHHhHHhhhhhhhhhcccceeeeccccccccccHHHhhhccccccccceEEecchHHHHhhccchhhHHhhCce
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcHHHHHHhhhcCCcceEeccccccCcCCCchHHH--HhhHHHHHHHHHHHHHHhCCceeEEEEeecCCCCCe
Q 004444 585 VLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGEKNEEKE--KVMKEEFGQTCDWIKKRLGDKVASVQISNRLSSSPC 662 (753)
Q Consensus 585 VL~l~dpiDE~~l~~L~~y~~~~f~~V~~~~l~l~~~~e~~~--~~~~~e~~~L~~~lk~~L~~kV~~V~vS~rL~~sPa 662 (753)
||||++|||++||++|.+|+|++|++|++++++|++.++++. +..++++++|++||++.|+++|.+|++|.||++|||
T Consensus 317 VL~l~dpIDe~~i~~L~e~~gkkf~~I~ke~l~l~~~e~ek~~~e~~~~~~~~L~~~~k~~L~~kV~~V~vS~RL~~sPa 396 (531)
T PF00183_consen 317 VLFLTDPIDEFVIQQLEEYEGKKFQSIDKEDLDLEEDEEEKKEDEELKEEFKPLTEWLKELLGDKVEKVKVSNRLVDSPA 396 (531)
T ss_dssp EEEE-SHHHHHHHHHHSEETTEEEEETTBSSSSSSTSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEE-SSSSSSSE
T ss_pred EEEeCCchHHHHHHHHhhccccccccccccccccccchhhhhhhhhhhhHHHHHHHHHHhhhhhhhheecccccccCCcc
Confidence 999999999999999999999999999999999887665543 455678999999999999999999999999999999
Q ss_pred EEEecCCCchHHHHHHHHHhccCCCCccccccCceeEEECCCChHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHhCCCC
Q 004444 663 VLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFT 742 (753)
Q Consensus 663 ~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLIk~L~~~~~~~~~d~~~~~l~~~Lyd~AlL~~G~~ 742 (753)
|||++++|+|++|+|||+||+++++....+|..+++|||||+||||++|+.+...+++++.++++|+||||+|+|++||+
T Consensus 397 ~lv~~e~g~s~~Merimkaqa~~~~~~~~~~~~kkiLEINp~HPLIk~L~~~~~~d~~d~~~~~la~~LyD~AlL~~G~~ 476 (531)
T PF00183_consen 397 VLVSSEYGWSANMERIMKAQAMADMSMQEYMPSKKILEINPNHPLIKKLLKLVEKDEDDELAKDLAEQLYDTALLASGFE 476 (531)
T ss_dssp EEEE-SSSB-HHHHHHHHHHHCCSTTTSSTSC--EEEEE-TTSHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTTSS
T ss_pred eeecccchhHHHHHHHhhhhccccccccccccccceeecCCCCHHHHHHHhhhcccchhhHHHHHHHHHhhhhhhhcCCC
Confidence 99999999999999999999988776667777899999999999999999998888888899999999999999999999
Q ss_pred CccHHHHHhhC
Q 004444 743 VKSGRAWQQDI 753 (753)
Q Consensus 743 ~edp~~fa~ri 753 (753)
++||+.|++||
T Consensus 477 l~dp~~F~~Ri 487 (531)
T PF00183_consen 477 LEDPAAFAKRI 487 (531)
T ss_dssp -SSHHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 99999999985
No 9
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.68 E-value=1.2e-16 Score=153.00 Aligned_cols=103 Identities=37% Similarity=0.489 Sum_probs=78.5
Q ss_pred CCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEc-CCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchh
Q 004444 116 YSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTD-KDNGIITITDSGIGMTQQDLVDCLGTIAQSGTA 194 (753)
Q Consensus 116 Ys~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~ 194 (753)
|+. +.+|+|||+||+||.... +.|.|..+ .....|.|.|||.||+.++|.. ++++|.|.+.
T Consensus 1 y~~-~~al~ElI~Ns~DA~a~~----------------I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s~k~ 62 (137)
T PF13589_consen 1 YSP-EDALRELIDNSIDAGATN----------------IKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRSSKK 62 (137)
T ss_dssp -SC-THHHHHHHHHHHHHHHHH----------------EEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHTHHH
T ss_pred CcH-HHHHHHHHHHHHHccCCE----------------EEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCCCCC
Confidence 666 889999999999999643 45555554 3458999999999999999999 7789998865
Q ss_pred hHHHHhhccccCCCCCCccccccch-hheeecccCEEEEEEecCCCCCcEEEEe
Q 004444 195 KFLKAMKDSKDAGGDSNLIGQFGVG-FYSAFLVSDRVVVETKSPKSDKQYVWEG 247 (753)
Q Consensus 195 ~f~~~~~~~~~~~~~~~~IGqFGIG-f~S~F~vadkV~V~Tk~~~~~~~~~w~s 247 (753)
.. .....+|+||+| ++|+|+++++++|+|+..+....+.|..
T Consensus 63 ~~-----------~~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~ 105 (137)
T PF13589_consen 63 SE-----------KDRQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTIDY 105 (137)
T ss_dssp HH-----------HHGGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEEE
T ss_pred ch-----------hhhhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEEE
Confidence 21 123569999999 8899999999999999966565665544
No 10
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.41 E-value=3.9e-12 Score=138.11 Aligned_cols=166 Identities=22% Similarity=0.296 Sum_probs=107.8
Q ss_pred HHHHH-hcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCc-EEEEEeCCCCCCHHHHHHHH
Q 004444 108 MDLIV-NSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNG-IITITDSGIGMTQQDLVDCL 185 (753)
Q Consensus 108 l~ll~-~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~-~l~I~DnGiGMt~~el~~~l 185 (753)
...|. .....++..+|.|||+||.||.+ . .|.|.+..... .|+|.|||.||+.+++...+
T Consensus 11 ~~~i~s~~~i~~~~~~l~eLi~Na~dA~a----------------~--~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~ 72 (312)
T TIGR00585 11 VNKIAAGEVIERPASVVKELVENSLDAGA----------------T--RIDVEIEEGGLKLIEVSDNGSGIDKEDLPLAC 72 (312)
T ss_pred HHHHhCcCchhhHHHHHHHHHHHHHHCCC----------------C--EEEEEEEeCCEEEEEEEecCCCCCHHHHHHHh
Confidence 33444 45677899999999999999962 2 34554443333 59999999999999998744
Q ss_pred hHhhhcchh-hHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEec-CCCCCcEEEEeeCCCCceEEEecCCCC
Q 004444 186 GTIAQSGTA-KFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKS-PKSDKQYVWEGEANASSYTIREETNPE 263 (753)
Q Consensus 186 ~tIa~Sg~~-~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~-~~~~~~~~w~s~~~~~~y~i~~~~~~~ 263 (753)
. -..+++. .+. .+ ......|.+|.|++|...+| +++|+|+. ...+.++.|...|. .+.+.. +
T Consensus 73 ~-~~~tsk~~~~~-~~-------~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~~~~~~~~~~~g~----~~~~~~-~- 136 (312)
T TIGR00585 73 E-RHATSKIQSFE-DL-------ERIETLGFRGEALASISSVS-RLTITTKTSAADGLAWQALLEGG----MIEEIK-P- 136 (312)
T ss_pred h-CCCcCCCCChh-Hh-------hcccccCccchHHHHHHhhC-cEEEEEeecCCCcceEEEEECCC----cCcccc-c-
Confidence 3 3333322 111 11 23356899999999999998 89999997 45556788874332 222211 1
Q ss_pred CCCCCccEEEEE-ecCC---CcCCCC-----HHHHHHHHHHhc---CCCCcCeEEe
Q 004444 264 KLLPRGTRLTLY-LKHD---DKGFAH-----PERIQKLVKNYS---QFVSFPIYTW 307 (753)
Q Consensus 264 ~~~~~GT~I~L~-Lk~~---~~~~~~-----~~~i~~lik~ys---~fl~~PI~~~ 307 (753)
...++||+|++. |-.. ...++. -..+++++++|+ ..|.|.++..
T Consensus 137 ~~~~~GTtV~v~~lf~n~p~r~~~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~ 192 (312)
T TIGR00585 137 APRPVGTTVEVRDLFYNLPVRRKFLKSPKKEFRKILDLLNRYALIHPDVSFSLTHD 192 (312)
T ss_pred ccCCCccEEEEchhhccCchhhhhccCcHHHHHHHHHHHHHHhhcCCCeEEEEEEC
Confidence 235799999997 2111 111222 357889999998 4556666653
No 11
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.24 E-value=3.9e-11 Score=131.68 Aligned_cols=152 Identities=22% Similarity=0.269 Sum_probs=102.8
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEE-EcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHH
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQ-TDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLK 198 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~-~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~ 198 (753)
...++|||-||.|||+... ..+++.|+|. .+.+..+++|+|||+|+..+.+-+.||++-.+++-.
T Consensus 38 ~~tv~ElV~NSLDA~eeaG-----------ILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh--- 103 (538)
T COG1389 38 TTTVHELVTNSLDACEEAG-----------ILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFH--- 103 (538)
T ss_pred HHHHHHHHhcchhhHHhcC-----------CCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhh---
Confidence 3578999999999998542 3455667666 346667899999999999999999999998876531
Q ss_pred HhhccccCCCCCCccccccchhheeeccc-----CEEEEEEecCCCCCcEEEEe--eCCCCceE-EEecCCCCCCCCCcc
Q 004444 199 AMKDSKDAGGDSNLIGQFGVGFYSAFLVS-----DRVVVETKSPKSDKQYVWEG--EANASSYT-IREETNPEKLLPRGT 270 (753)
Q Consensus 199 ~~~~~~~~~~~~~~IGqFGIGf~S~F~va-----dkV~V~Tk~~~~~~~~~w~s--~~~~~~y~-i~~~~~~~~~~~~GT 270 (753)
...+..||+|||.-+|.++| ..|.|+|+..+.+..+.++- +-+.++=. ++..........|||
T Consensus 104 ---------~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT 174 (538)
T COG1389 104 ---------RNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGT 174 (538)
T ss_pred ---------hhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCce
Confidence 12355699999988777665 66999999844455554432 21111111 222111101246999
Q ss_pred EEEEEecCCCcCCCCHHH-HHHHHHHh
Q 004444 271 RLTLYLKHDDKGFAHPER-IQKLVKNY 296 (753)
Q Consensus 271 ~I~L~Lk~~~~~~~~~~~-i~~lik~y 296 (753)
+|.|+++..+. -...+ +.++|+.-
T Consensus 175 ~Vel~~~~~~~--~~~~qgi~eYlkrt 199 (538)
T COG1389 175 RVELELKGVWY--RAKRQGIYEYLKRT 199 (538)
T ss_pred EEEEEecccch--hhcccCHHHHHHHH
Confidence 99999998763 23444 67777653
No 12
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.08 E-value=2.3e-09 Score=126.39 Aligned_cols=160 Identities=21% Similarity=0.305 Sum_probs=101.3
Q ss_pred HHHHHH-hcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCC-CcEEEEEeCCCCCCHHHHHHH
Q 004444 107 LMDLIV-NSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKD-NGIITITDSGIGMTQQDLVDC 184 (753)
Q Consensus 107 ll~ll~-~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~el~~~ 184 (753)
+.+.|. .....++...|+|||.||.||.+ + .|.|.+... ...|+|.|||.||+.+++...
T Consensus 10 v~~~IaAgevI~~~~svvkElveNsiDAga----------------t--~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~ 71 (617)
T PRK00095 10 LANQIAAGEVVERPASVVKELVENALDAGA----------------T--RIDIEIEEGGLKLIRVRDNGCGISKEDLALA 71 (617)
T ss_pred HHHHhcCcCcccCHHHHHHHHHHHHHhCCC----------------C--EEEEEEEeCCeEEEEEEEcCCCCCHHHHHHH
Confidence 334443 55677899999999999999963 2 455555333 357999999999999999875
Q ss_pred HhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCC
Q 004444 185 LGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEK 264 (753)
Q Consensus 185 l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~ 264 (753)
+..-+.|.-..+ +.+ ....-.|..|.|+.|.-.|+ +++|+|+..+++.++.+.-.++ ....+.+.
T Consensus 72 ~~~~~tsKi~~~-~dl-------~~~~t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G-~~~~~~~~----- 136 (617)
T PRK00095 72 LARHATSKIASL-DDL-------EAIRTLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYEGG-EIVEVKPA----- 136 (617)
T ss_pred hhccCCCCCCCh-hHh-------hccccCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEecCC-cCcceecc-----
Confidence 442222211110 111 12245799999999988887 8999999854455666654433 11122221
Q ss_pred CCCCccEEEEE-e---cCCCcCCC-----CHHHHHHHHHHhcCC
Q 004444 265 LLPRGTRLTLY-L---KHDDKGFA-----HPERIQKLVKNYSQF 299 (753)
Q Consensus 265 ~~~~GT~I~L~-L---k~~~~~~~-----~~~~i~~lik~ys~f 299 (753)
...+||+|++. | -+....|+ +...|.+++++|+-.
T Consensus 137 ~~~~GT~V~v~~LF~n~P~Rrkflk~~~~e~~~i~~~v~~~Al~ 180 (617)
T PRK00095 137 AHPVGTTIEVRDLFFNTPARRKFLKSEKTELGHIDDVVNRLALA 180 (617)
T ss_pred cCCCCCEEEechhhccCcHHHHhccCcHHHHHHHHHHHHHHhhc
Confidence 24799999996 2 11112232 234678888888755
No 13
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.02 E-value=2.1e-09 Score=123.34 Aligned_cols=154 Identities=25% Similarity=0.306 Sum_probs=96.8
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEc---CCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhH
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTD---KDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKF 196 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d---~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f 196 (753)
...|+|||.||.||+.... ..+.+.|.+... .....|+|+|||+||+.+++...|+....+++ |
T Consensus 38 ~qVLkNLIeNAIDa~~~~g-----------ilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK--~ 104 (535)
T PRK04184 38 YTTVKELVDNSLDACEEAG-----------ILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSK--F 104 (535)
T ss_pred HHHHHHHHHHHHHHhhhcC-----------CCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccc--c
Confidence 4578999999999996321 112344444432 22357999999999999999987766533322 1
Q ss_pred HHHhhccccCCCCCCccccccchhheeecccC-----EEEEEEecCCCCCcEEEEee--C--CCCceEEEecCCCCCCCC
Q 004444 197 LKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSD-----RVVVETKSPKSDKQYVWEGE--A--NASSYTIREETNPEKLLP 267 (753)
Q Consensus 197 ~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vad-----kV~V~Tk~~~~~~~~~w~s~--~--~~~~y~i~~~~~~~~~~~ 267 (753)
. ......|++|+|+.++.+++. .+.|.|+..++..++.++-. . ..+. .+.....+ ....
T Consensus 105 ----~------~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~-i~~~~~~~-~~~~ 172 (535)
T PRK04184 105 ----H------NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPI-ILEREEVD-WDRW 172 (535)
T ss_pred ----c------ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCe-eccccccC-CCCC
Confidence 0 112456999999999988865 58999987333324554432 1 1021 11111111 1347
Q ss_pred CccEEEEEecCCCcCCCCHHHHHHHHHHhcCCC
Q 004444 268 RGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFV 300 (753)
Q Consensus 268 ~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl 300 (753)
+||+|.+.+..++. ....++.++|++++---
T Consensus 173 ~GT~V~V~l~~~~~--~~~~~I~e~i~r~Al~n 203 (535)
T PRK04184 173 HGTRVELEIEGDWY--RAKQRIYEYLKRTAIVN 203 (535)
T ss_pred CCEEEEEEECCcCh--hhHHHHHHHHHHHHHhC
Confidence 89999999887653 22678889998876543
No 14
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.92 E-value=7.6e-09 Score=117.71 Aligned_cols=151 Identities=21% Similarity=0.259 Sum_probs=94.8
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcC---CCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHH
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDK---DNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFL 197 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~ 197 (753)
..++|||.||+||+... .....|.|.+.. +...|+|.|||.||+.+++...|....++++-
T Consensus 31 ~VlkELVeNAIDA~~~~-------------g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~--- 94 (488)
T TIGR01052 31 TVIHELVTNSLDACEEA-------------GILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKF--- 94 (488)
T ss_pred HHHHHHHHHHHHHhhcc-------------CCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCcc---
Confidence 47899999999998521 111234444332 22379999999999999999877765443321
Q ss_pred HHhhccccCCCCCCccccccchhheeecccC-----EEEEEEecCCCCCcEEEEeeC----CCCceEEEecCCCCCCCCC
Q 004444 198 KAMKDSKDAGGDSNLIGQFGVGFYSAFLVSD-----RVVVETKSPKSDKQYVWEGEA----NASSYTIREETNPEKLLPR 268 (753)
Q Consensus 198 ~~~~~~~~~~~~~~~IGqFGIGf~S~F~vad-----kV~V~Tk~~~~~~~~~w~s~~----~~~~y~i~~~~~~~~~~~~ 268 (753)
. ......|++|+|+.++.+++. .++|.|+..+...++..+..- ..|. .+...+.+ ....+
T Consensus 95 ---~------~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~-i~~~~~~~-~~~~~ 163 (488)
T TIGR01052 95 ---H------RIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGE-IVEKGEWN-KPGWR 163 (488)
T ss_pred ---c------cccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCe-ecceeecC-CCCCC
Confidence 0 123456999999999988886 399999984333344444321 1122 11221111 11247
Q ss_pred ccEEEEEecCCCcCCCCHHHHHHHHHHhcCC
Q 004444 269 GTRLTLYLKHDDKGFAHPERIQKLVKNYSQF 299 (753)
Q Consensus 269 GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~f 299 (753)
||+|++.+...+..+ ...++.+++++++--
T Consensus 164 GT~V~v~f~~~~~r~-~k~~i~e~l~~~Al~ 193 (488)
T TIGR01052 164 GTRIELEFKGVSYRR-SKQGVYEYLRRTAVA 193 (488)
T ss_pred ceEEEEEECCceeec-cHHHHHHHHHHHHhh
Confidence 999999976544221 357889999887654
No 15
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.83 E-value=1.7e-08 Score=118.50 Aligned_cols=149 Identities=21% Similarity=0.344 Sum_probs=95.3
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCC--CcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHH
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKD--NGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLK 198 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~--~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~ 198 (753)
..|+|||.||+||+.. ....+.|.|.+... .-.|+|+|||.||+.+++...|...+++++ |.
T Consensus 49 tVLkNLIeNALDAs~~-------------~gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSK--f~- 112 (795)
T PRK14868 49 TAVKEAVDNALDATEE-------------AGILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSR--FH- 112 (795)
T ss_pred HHHHHHHHHHHHhCcc-------------cCCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhccccc--cc-
Confidence 4788999999999842 11112454444333 246999999999999999998776654432 10
Q ss_pred HhhccccCCCCCCccccccchhheeecccC-----EEEEEEecCCCCCcEEEEe--eCCCCceEE--EecCCCCCCCCCc
Q 004444 199 AMKDSKDAGGDSNLIGQFGVGFYSAFLVSD-----RVVVETKSPKSDKQYVWEG--EANASSYTI--REETNPEKLLPRG 269 (753)
Q Consensus 199 ~~~~~~~~~~~~~~IGqFGIGf~S~F~vad-----kV~V~Tk~~~~~~~~~w~s--~~~~~~y~i--~~~~~~~~~~~~G 269 (753)
......|+.|+|+-++.+++. .+.|.|+..+...++.|+- +++.+.=.| .... . ....+|
T Consensus 113 ---------~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~-~-~~~~~G 181 (795)
T PRK14868 113 ---------AREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETT-T-WDRPHG 181 (795)
T ss_pred ---------ccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceec-c-cCCCCc
Confidence 111345899999999888875 4899998744445664543 333111111 1111 1 235799
Q ss_pred cEEEEEecCCCcCCCCHHHHHHHHHHhcCC
Q 004444 270 TRLTLYLKHDDKGFAHPERIQKLVKNYSQF 299 (753)
Q Consensus 270 T~I~L~Lk~~~~~~~~~~~i~~lik~ys~f 299 (753)
|+|++.|.-.+ ....+|.++|++++--
T Consensus 182 T~IeV~Lf~N~---pAR~kI~eyl~r~Al~ 208 (795)
T PRK14868 182 TRIELEMEANM---RARQQLHDYIKHTAVV 208 (795)
T ss_pred eEEEEEEEccC---chhhhHHHHHHHHHhh
Confidence 99999986543 3466788888876543
No 16
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=98.70 E-value=4.1e-08 Score=115.92 Aligned_cols=160 Identities=21% Similarity=0.275 Sum_probs=107.4
Q ss_pred HHHHHH-hcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcE-EEEEeCCCCCCHHHHHHH
Q 004444 107 LMDLIV-NSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGI-ITITDSGIGMTQQDLVDC 184 (753)
Q Consensus 107 ll~ll~-~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~-l~I~DnGiGMt~~el~~~ 184 (753)
+.+.|+ -.....|..+++|||.||.||.+ .+|+|.++..+.. |.|+|||+||+.+|+.-.
T Consensus 11 l~nqIAAGEVIerPaSVVKELVENSlDAGA------------------t~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la 72 (638)
T COG0323 11 LVNQIAAGEVIERPASVVKELVENSLDAGA------------------TRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLA 72 (638)
T ss_pred HHHHhcccceeecHHHHHHHHHhcccccCC------------------CEEEEEEccCCccEEEEEECCCCCCHHHHHHH
Confidence 444444 44667899999999999999974 3688887776654 999999999999999876
Q ss_pred HhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCce-EEEecCCCC
Q 004444 185 LGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSY-TIREETNPE 263 (753)
Q Consensus 185 l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y-~i~~~~~~~ 263 (753)
+..=|.|--..+-+ + ....-.|.-|=.+.|.-.| -+++|+|++.....++.|.-.|+ ..- ++.+.
T Consensus 73 ~~rHaTSKI~~~~D-L-------~~I~TlGFRGEAL~SIasV-srlti~Srt~~~~~~~~~~~~g~-~~~~~~~p~---- 138 (638)
T COG0323 73 LLRHATSKIASLED-L-------FRIRTLGFRGEALASIASV-SRLTITSRTAEASEGTQIYAEGG-GMEVTVKPA---- 138 (638)
T ss_pred HhhhccccCCchhH-H-------HHhhccCccHHHHHHHHhh-heeEEEeecCCcCceEEEEecCC-cccccccCC----
Confidence 65554443222111 1 1224567778788888777 58999999755566777776665 222 33332
Q ss_pred CCCCCccEEEEE-ecCC---CcCC-----CCHHHHHHHHHHhcCC
Q 004444 264 KLLPRGTRLTLY-LKHD---DKGF-----AHPERIQKLVKNYSQF 299 (753)
Q Consensus 264 ~~~~~GT~I~L~-Lk~~---~~~~-----~~~~~i~~lik~ys~f 299 (753)
..+.||+|++. |=-. -..| .+-..|.++|++|+-.
T Consensus 139 -a~~~GTtVeV~dLF~NtPaRrKflks~~~E~~~i~~vv~r~ALa 182 (638)
T COG0323 139 -AHPVGTTVEVRDLFYNTPARRKFLKSEKTEFGHITELINRYALA 182 (638)
T ss_pred -CCCCCCEEEehHhhccChHHHHhhcccHHHHHHHHHHHHHHHhc
Confidence 24569999986 3111 0122 2345788899998755
No 17
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.33 E-value=2.3e-06 Score=100.56 Aligned_cols=151 Identities=19% Similarity=0.222 Sum_probs=86.3
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcC-CCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHH
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDK-DNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKA 199 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~-~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~ 199 (753)
..++|||.||.||+.... ..+.+.|.+.... ..-.|+|.|||.||+.+++...|...- .|++ |
T Consensus 39 ~VVkELVeNAIDA~~~~g-----------~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~-atSK-~--- 102 (659)
T PRK14867 39 TIIHELVTNSLDACEEAE-----------ILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKML-AGSK-M--- 102 (659)
T ss_pred HHHHHHHHHHHHHhhccC-----------CCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhcccc-ccCc-c---
Confidence 478999999999985210 1122344443321 223599999999999999998776532 2222 1
Q ss_pred hhccccCCCCCCccccccchhheeecccCE-----EEEEEecCCCCCc--EEEEeeC--CCCceEEEecCCCCCCCCCcc
Q 004444 200 MKDSKDAGGDSNLIGQFGVGFYSAFLVSDR-----VVVETKSPKSDKQ--YVWEGEA--NASSYTIREETNPEKLLPRGT 270 (753)
Q Consensus 200 ~~~~~~~~~~~~~IGqFGIGf~S~F~vadk-----V~V~Tk~~~~~~~--~~w~s~~--~~~~y~i~~~~~~~~~~~~GT 270 (753)
. .-....|+.|+|+.++-++++. +.|.|+. +.+.. +.|..+- ..|...-.+.+ ....+||
T Consensus 103 -~------~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~-g~G~~f~i~L~i~i~~n~G~I~~~~~~---~~~~~GT 171 (659)
T PRK14867 103 -H------RLIQSRGQQGIGAAGVLLFSQITTGKPLKITTST-GDGKIHEMEIKMSVEKNEGDIVSHKVR---EGFWRGT 171 (659)
T ss_pred -c------ceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEc-CCCEEEEEEEEEEecccCCeecccccC---CCCCCCc
Confidence 0 0124458999999887766544 6888876 44433 2332221 21222111111 1247999
Q ss_pred EEEEEecCCCcCCCCHHHHHHHHHHhcCC
Q 004444 271 RLTLYLKHDDKGFAHPERIQKLVKNYSQF 299 (753)
Q Consensus 271 ~I~L~Lk~~~~~~~~~~~i~~lik~ys~f 299 (753)
+|++.+++-.... .+.++.+++++++--
T Consensus 172 ~Ie~~V~dLFynR-~E~~i~e~l~r~ALa 199 (659)
T PRK14867 172 RVEGEFKEVTYNR-REQGPFEYLRRISLS 199 (659)
T ss_pred EEEEEEeeceech-hhHHHHHHHHHHHHh
Confidence 9997666421111 123478888876643
No 18
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.27 E-value=1.9e-06 Score=78.60 Aligned_cols=80 Identities=26% Similarity=0.446 Sum_probs=58.0
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHh
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAM 200 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~ 200 (753)
..|.||++||+|+... ...+.|.+..+.+.-.|+|.|||.||+.+++...+..... ++
T Consensus 8 ~il~~ll~Na~~~~~~--------------~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~-~~------- 65 (111)
T PF02518_consen 8 QILSELLDNAIKHSPE--------------GGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFT-SD------- 65 (111)
T ss_dssp HHHHHHHHHHHHHHHH--------------TSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSH-SS-------
T ss_pred HHHHHHHHHHHHHhcC--------------CCEEEEEEEEecCeEEEEEEeccccccccccccchhhccc-cc-------
Confidence 4789999999999853 1345666666666778999999999999999874421111 10
Q ss_pred hccccCCCCCCccccccchhheeecccCE
Q 004444 201 KDSKDAGGDSNLIGQFGVGFYSAFLVSDR 229 (753)
Q Consensus 201 ~~~~~~~~~~~~IGqFGIGf~S~F~vadk 229 (753)
.+....+.+|+|++.+..+++.
T Consensus 66 -------~~~~~~~g~GlGL~~~~~~~~~ 87 (111)
T PF02518_consen 66 -------KSETSISGHGLGLYIVKQIAER 87 (111)
T ss_dssp -------SSSGGSSSSSHHHHHHHHHHHH
T ss_pred -------ccccccCCCChHHHHHHHHHHH
Confidence 1234567799999999888765
No 19
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.24 E-value=2.1e-06 Score=101.73 Aligned_cols=153 Identities=19% Similarity=0.228 Sum_probs=94.9
Q ss_pred chhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHH--------HHhHhhh
Q 004444 119 KEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD--------CLGTIAQ 190 (753)
Q Consensus 119 ~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~--------~l~tIa~ 190 (753)
....++|||-||.|++.. ..-..|.|.++.+ +.|+|.|||.||+.+.... .|+++-.
T Consensus 38 l~~lv~EivdNaiDe~~a--------------g~a~~I~V~i~~d-g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lha 102 (631)
T PRK05559 38 LHHLVQEVIDNSVDEALA--------------GHGKRIEVTLHAD-GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHA 102 (631)
T ss_pred hhhhhhhhhccccchhhc--------------CCCCEEEEEEeCC-CcEEEEEcCCCCCcccccccCCcchheeeeeccc
Confidence 356899999999999731 1123677776654 5899999999999988776 4554433
Q ss_pred cchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCcc
Q 004444 191 SGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGT 270 (753)
Q Consensus 191 Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT 270 (753)
+|+ |- .. .....-|..|+|..++=.++.+++|.|+..+..-...|+ ++...-.+...... ....+||
T Consensus 103 gsK--f~----~~----~yk~SgGl~GvGls~vNalS~~l~V~s~r~g~~~~~~f~--~G~~~~~l~~~~~~-~~~~~GT 169 (631)
T PRK05559 103 GGK--FS----NK----AYKFSGGLHGVGVSVVNALSSRLEVEVKRDGKVYRQRFE--GGDPVGPLEVVGTA-GKRKTGT 169 (631)
T ss_pred cCc--cC----Cc----cccccCcccccchhhhhhheeeEEEEEEeCCeEEEEEEE--CCcCccCccccccc-cCCCCCc
Confidence 332 11 00 112457999999999999999999999973222233443 22011111111110 0146899
Q ss_pred EEEEEecCCC--cCCCCHHHHHHHHHHhcCC
Q 004444 271 RLTLYLKHDD--KGFAHPERIQKLVKNYSQF 299 (753)
Q Consensus 271 ~I~L~Lk~~~--~~~~~~~~i~~lik~ys~f 299 (753)
+|+....... ..-++...|.+.++.++-.
T Consensus 170 ~V~f~PD~~iF~~~~~~~~~i~~~l~~~A~l 200 (631)
T PRK05559 170 RVRFWPDPKIFDSPKFSPERLKERLRSKAFL 200 (631)
T ss_pred EEEEEECHHHcCCcccCHHHHHHHHHHHHhh
Confidence 9999754321 1123567788888887643
No 20
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.15 E-value=2.5e-06 Score=100.51 Aligned_cols=155 Identities=21% Similarity=0.249 Sum_probs=91.9
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHH-------HHHhHhhhcchh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLV-------DCLGTIAQSGTA 194 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~-------~~l~tIa~Sg~~ 194 (753)
.++|||-||+||... ..--.|.|.++.+ +.|+|.|||.||+.+... +.+.++-..|.+
T Consensus 5 ~v~ElvdNAiD~~~~--------------g~at~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~k 69 (594)
T smart00433 5 LVDEIVDNAADEALA--------------GYMDTIKVTIDKD-NSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGK 69 (594)
T ss_pred EEeeehhcccchhcc--------------CCCCEEEEEEeCC-CeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCC
Confidence 578999999999731 1123677777665 499999999999853321 112233333322
Q ss_pred hHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCC-CceEEEecCCCCCCCCCccEEE
Q 004444 195 KFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANA-SSYTIREETNPEKLLPRGTRLT 273 (753)
Q Consensus 195 ~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~-~~y~i~~~~~~~~~~~~GT~I~ 273 (753)
| .+ ......-|..|+|..++-.++.+++|.|+..+..-...|+..|.. ...++. + .....||+|+
T Consensus 70 -f----d~----~~~k~s~G~~G~Gls~vnalS~~l~v~~~~~g~~~~~~~~~~G~~~~~~~~~--~---~~~~~GT~V~ 135 (594)
T smart00433 70 -F----DD----DAYKVSGGLHGVGASVVNALSTEFEVEVARDGKEYKQSFSNNGKPLSEPKII--G---DTKKDGTKVT 135 (594)
T ss_pred -C----CC----CCccccCCcccchHHHHHHhcCceEEEEEeCCcEEEEEEeCCCeECccceec--C---CCCCCCcEEE
Confidence 1 10 012235799999999999999999999998432223334322220 011111 1 1347899999
Q ss_pred EEecCCCcCCCC-----HHHHHHHHHHhcCCC-CcCeEEe
Q 004444 274 LYLKHDDKGFAH-----PERIQKLVKNYSQFV-SFPIYTW 307 (753)
Q Consensus 274 L~Lk~~~~~~~~-----~~~i~~lik~ys~fl-~~PI~~~ 307 (753)
. .++...|.. ...|.+.++.++-.- ..-|.++
T Consensus 136 F--~Pd~~~F~~~~~~~~~~i~~rl~~~A~l~pgl~i~l~ 173 (594)
T smart00433 136 F--KPDLEIFGMTTDDDFELLKRRLRELAFLNKGVKITLN 173 (594)
T ss_pred E--EECHHHhCCcccchHHHHHHHHHHHHhcCCCcEEEEe
Confidence 5 444444433 367888888875332 3344444
No 21
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.02 E-value=1.3e-05 Score=94.85 Aligned_cols=157 Identities=20% Similarity=0.168 Sum_probs=95.4
Q ss_pred chhHHHHhHHhHHH---HHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHH--------HHHHHhH
Q 004444 119 KEVFLRELISNASD---ALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQD--------LVDCLGT 187 (753)
Q Consensus 119 ~~vflRELIqNA~D---A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e--------l~~~l~t 187 (753)
+...+.|||-||+| |. .. -+|.|.++.+ +.|+|.|||.||+.++ +.-.|++
T Consensus 31 ~~~lv~ElvdNsiDE~~ag---------------~a--~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~ 92 (625)
T TIGR01055 31 PNHLVQEVIDNSVDEALAG---------------FA--SIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILTT 92 (625)
T ss_pred cceeehhhhhcccchhhcC---------------CC--CEEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHHhhhc
Confidence 46699999999999 42 12 2567776655 7999999999999987 5544433
Q ss_pred hhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecC-CCCC-C
Q 004444 188 IAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREET-NPEK-L 265 (753)
Q Consensus 188 Ia~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~-~~~~-~ 265 (753)
. ..|++ | ... .-....|.-|+|..++=.++.+++|.|+..+ ..|.++..++ . .+.+.. -++. .
T Consensus 93 l-hagsK-~----~~~----~~~~SgG~~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G--~-~~~~~~~i~~~~~ 157 (625)
T TIGR01055 93 L-HAGGK-F----SNK----NYHFSGGLHGVGISVVNALSKRVKIKVYRQG--KLYSIAFENG--A-KVTDLISAGTCGK 157 (625)
T ss_pred c-cccCC-C----CCC----cceecCCCcchhHHHHHHhcCeEEEEEEECC--eEEEEEEECC--e-EccccccccccCC
Confidence 3 22322 1 110 1124579999999999999999999998733 2244333332 1 111111 0001 1
Q ss_pred CCCccEEEEEecCCC--cCCCCHHHHHHHHHHhcCCC-CcCeEEec
Q 004444 266 LPRGTRLTLYLKHDD--KGFAHPERIQKLVKNYSQFV-SFPIYTWQ 308 (753)
Q Consensus 266 ~~~GT~I~L~Lk~~~--~~~~~~~~i~~lik~ys~fl-~~PI~~~~ 308 (753)
...||+|+..-...- ..-.+..+|.+.++.++-.- ..-|.+++
T Consensus 158 ~~~GT~V~F~PD~~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~d 203 (625)
T TIGR01055 158 RLTGTSVHFTPDPEIFDSLHFSVSRLYHILRAKAVLCRGVEIEFED 203 (625)
T ss_pred CCCCeEEEEEECHHHCCCCccCHHHHHHHHHHHHhhCCCcEEEEee
Confidence 358999998633321 11234567888888775443 34555544
No 22
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=97.91 E-value=2.1e-05 Score=93.88 Aligned_cols=148 Identities=16% Similarity=0.171 Sum_probs=87.3
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHH-------HHHhHhhhcc
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLV-------DCLGTIAQSG 192 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~-------~~l~tIa~Sg 192 (753)
...++|||-||.|-.. ....-.|.|.++. ++.|+|.|||.||+.+--. +.+.++-.+|
T Consensus 32 ~~vv~Elv~NaiDe~~--------------ag~a~~I~V~i~~-~g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag 96 (654)
T TIGR01059 32 HHLVYEVVDNSIDEAM--------------AGYCDTINVTIND-DGSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAG 96 (654)
T ss_pred HhhhHHhhhccccccc--------------cCCCCEEEEEEeC-CCcEEEEEeCCCcCccccCcCCCCchHHheeeeccc
Confidence 3478899999999431 0112356666664 4569999999999985110 1122222223
Q ss_pred hhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCccEE
Q 004444 193 TAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRL 272 (753)
Q Consensus 193 ~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT~I 272 (753)
.+ | .+. ......|.-|+|..|+=.++.+++|.|+..+..-...|+ ++...-.+...+ .....||+|
T Consensus 97 ~k-f----~~~----~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~~~~~~~~--~G~~~~~l~~~~---~~~~~GT~V 162 (654)
T TIGR01059 97 GK-F----DKD----SYKVSGGLHGVGVSVVNALSEWLEVTVFRDGKIYRQEFE--RGIPLGPLEVVG---ETKKTGTTV 162 (654)
T ss_pred Cc-c----CCC----cceecCCccchhHHHHHHhcCeEEEEEEECCeEEEEEEe--CCCcccCceecc---CCCCCCcEE
Confidence 22 2 100 122457999999999999999999999974322233343 220111111111 234789999
Q ss_pred EEEecCCCcCC----CCHHHHHHHHHHhcC
Q 004444 273 TLYLKHDDKGF----AHPERIQKLVKNYSQ 298 (753)
Q Consensus 273 ~L~Lk~~~~~~----~~~~~i~~lik~ys~ 298 (753)
+.+-.+ .-| .+...|.+.++.++-
T Consensus 163 ~F~pdp--~~F~~~~~e~~~i~~rl~~~A~ 190 (654)
T TIGR01059 163 RFWPDP--EIFETTEFDFDILAKRLRELAF 190 (654)
T ss_pred EEEECh--HHhCCcccCHHHHHHHHHHhhc
Confidence 955333 234 356788888888873
No 23
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=97.89 E-value=2.9e-05 Score=92.24 Aligned_cols=156 Identities=22% Similarity=0.222 Sum_probs=91.4
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHH-------HHHhHhhhcch
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLV-------DCLGTIAQSGT 193 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~-------~~l~tIa~Sg~ 193 (753)
..++|||-||.|-.. ......|.|.++.+ +.|+|.|||.||+.+--. +.+.++-.+|.
T Consensus 40 ~~v~ElvdNaiDe~~--------------ag~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~ 104 (638)
T PRK05644 40 HLVYEIVDNSIDEAL--------------AGYCDHIEVTINED-GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGG 104 (638)
T ss_pred hhhHHhhhccccccc--------------CCCCCEEEEEEeCC-CcEEEEEeCccccCCccCCCCCCchHHheeeecccC
Confidence 477899999999431 01123677777654 599999999999985211 11222323332
Q ss_pred hhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCccEEE
Q 004444 194 AKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLT 273 (753)
Q Consensus 194 ~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT~I~ 273 (753)
+ | .+. ......|..|+|.-++=.++++++|.|+..+ ..|.....++ . .+.+..........||+|+
T Consensus 105 k-f----d~~----~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g--~~~~~~~~~G--~-~~~~~~~~~~~~~~GT~I~ 170 (638)
T PRK05644 105 K-F----GGG----GYKVSGGLHGVGVSVVNALSTWLEVEVKRDG--KIYYQEYERG--V-PVTPLEVIGETDETGTTVT 170 (638)
T ss_pred c-c----CCC----cccccCCccccchhhhhheeceEEEEEEeCC--cEEEEEEECC--e-EccCccccCCcCCCCcEEE
Confidence 2 1 100 1123579999999999999999999998743 3444333322 1 1111110001246899999
Q ss_pred EEecCCCcCC----CCHHHHHHHHHHhcCCC-CcCeEEe
Q 004444 274 LYLKHDDKGF----AHPERIQKLVKNYSQFV-SFPIYTW 307 (753)
Q Consensus 274 L~Lk~~~~~~----~~~~~i~~lik~ys~fl-~~PI~~~ 307 (753)
.. ++..-| ++...|.+.++.++-.- ..-|.++
T Consensus 171 F~--Pd~~~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~ 207 (638)
T PRK05644 171 FK--PDPEIFETTEFDYDTLATRLRELAFLNKGLKITLT 207 (638)
T ss_pred EE--ECHHHcCCcccCHHHHHHHHHHHHhhCCCcEEEEE
Confidence 64 333333 35677888888886432 3344444
No 24
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=97.71 E-value=8e-05 Score=89.40 Aligned_cols=155 Identities=18% Similarity=0.256 Sum_probs=91.6
Q ss_pred hhHHHHhHHhHHH-HHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHH----------HHHHHHhHh
Q 004444 120 EVFLRELISNASD-ALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQ----------DLVDCLGTI 188 (753)
Q Consensus 120 ~vflRELIqNA~D-A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~----------el~~~l~tI 188 (753)
...++|||-||.| |++ +.. -.|.|.++.+ +.|+|+|||.||+.+ |+. |+ .
T Consensus 39 hhlv~EivdNaiDE~~A-------------G~a--~~I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elv--lt-~ 99 (756)
T PRK14939 39 HHMVYEVVDNAIDEALA-------------GHC--DDITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVI--MT-V 99 (756)
T ss_pred hhhhhHhhccccccccc-------------CCC--CEEEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhhe--ee-e
Confidence 3589999999999 221 011 3577777654 599999999999987 432 22 2
Q ss_pred hhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCC
Q 004444 189 AQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPR 268 (753)
Q Consensus 189 a~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~ 268 (753)
-..|.+ | ... .-.-.-|.-|+|.-++=.++.+++|.|+..+ ..|..+...+...-.+.... ...+.
T Consensus 100 lhAggK-f----d~~----~ykvSgGlhGvG~svvNAlS~~l~v~v~r~g--k~~~q~f~~G~~~~~l~~~g---~~~~~ 165 (756)
T PRK14939 100 LHAGGK-F----DQN----SYKVSGGLHGVGVSVVNALSEWLELTIRRDG--KIHEQEFEHGVPVAPLKVVG---ETDKT 165 (756)
T ss_pred ecccCC-C----CCC----cccccCCccCccceEeehccCeEEEEEEeCC--eEEEEEEecCccccCccccC---CcCCC
Confidence 233332 2 100 1112469999999999999999999998733 22333322220110111111 12468
Q ss_pred ccEEEEEecCCC--cCCCCHHHHHHHHHHhcCCCC--cCeEEec
Q 004444 269 GTRLTLYLKHDD--KGFAHPERIQKLVKNYSQFVS--FPIYTWQ 308 (753)
Q Consensus 269 GT~I~L~Lk~~~--~~~~~~~~i~~lik~ys~fl~--~PI~~~~ 308 (753)
||+|+..-...- ..-++...|.+.++.++ |+. .-|.+++
T Consensus 166 GT~V~F~PD~~iF~~~~~~~~~i~~rl~elA-~lnpgl~i~l~d 208 (756)
T PRK14939 166 GTEVRFWPSPEIFENTEFDYDILAKRLRELA-FLNSGVRIRLKD 208 (756)
T ss_pred CcEEEEEECHHHcCCcccCHHHHHHHHHHHh-hcCCCCEEEEec
Confidence 999999633221 11235677888888776 443 4445543
No 25
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=97.64 E-value=7.7e-05 Score=86.60 Aligned_cols=159 Identities=19% Similarity=0.255 Sum_probs=94.3
Q ss_pred HHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcC-CCcEEEEEeCCCCCCHHHHHHHHhH
Q 004444 109 DLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDK-DNGIITITDSGIGMTQQDLVDCLGT 187 (753)
Q Consensus 109 ~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~-~~~~l~I~DnGiGMt~~el~~~l~t 187 (753)
.|-+.+...+...+++|||-||.||++ + .|+|.++. .-..|.|.|||.|++..+..- ++
T Consensus 11 rI~S~qvI~sl~sAVKELvENSiDAGA----------------T--~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~-l~- 70 (672)
T KOG1978|consen 11 RICSSQVITSLVSAVKELVENSIDAGA----------------T--AIDIKVKDYGSDSIEVSDNGSGISATDFEG-LA- 70 (672)
T ss_pred ccccCCeeccHHHHHHHHHhcCcccCC----------------c--eeeEecCCCCcceEEEecCCCCCCccchhh-hh-
Confidence 344555666778999999999999984 2 45555543 346899999999999998775 21
Q ss_pred hhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCC
Q 004444 188 IAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLP 267 (753)
Q Consensus 188 Ia~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~ 267 (753)
.+..+.. +..+.+- ....-.|..|=-+ |+.+-=-.|.|.|++.....+..|.-+.. |..+ ...+ -..+
T Consensus 71 -lkh~TSK-i~~f~Dl----~~l~T~GFRGEAL-SsLCa~~dv~I~Trt~~~~vgt~l~~Dh~-G~I~-~k~~---~ar~ 138 (672)
T KOG1978|consen 71 -LKHTTSK-IVSFADL----AVLFTLGFRGEAL-SSLCALGDVMISTRSHSAKVGTRLVYDHD-GHII-QKKP---VARG 138 (672)
T ss_pred -hhhhhhc-ccchhhh----hhhhhhhhHHHHH-HhhhhccceEEEEeeccCccceeEEEccC-Ccee-eecc---ccCC
Confidence 1111211 1111110 1112345555555 55444456778888754455888888777 6554 2212 2358
Q ss_pred CccEEEEE-ecCCC----cCCCC-----HHHHHHHHHHhcCC
Q 004444 268 RGTRLTLY-LKHDD----KGFAH-----PERIQKLVKNYSQF 299 (753)
Q Consensus 268 ~GT~I~L~-Lk~~~----~~~~~-----~~~i~~lik~ys~f 299 (753)
+||+|++. |=..- .+|-. -.++..+|..|+-+
T Consensus 139 ~GTTV~v~~LF~tLPVR~kef~r~~Kref~k~i~li~~y~li 180 (672)
T KOG1978|consen 139 RGTTVMVRQLFSTLPVRRKEFQRNIKRKFVKLISLIQAYALI 180 (672)
T ss_pred CCCEEEHhhhcccCCCchHHhhcchhhhhhhHHhhHHHHHhh
Confidence 99999986 32111 12211 23566777777765
No 26
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=97.37 E-value=0.00036 Score=79.64 Aligned_cols=151 Identities=21% Similarity=0.290 Sum_probs=92.6
Q ss_pred hcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCC-cEEEEEeCCCCCCHHHHHHHHhHhhhc
Q 004444 113 NSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDN-GIITITDSGIGMTQQDLVDCLGTIAQS 191 (753)
Q Consensus 113 ~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~el~~~l~tIa~S 191 (753)
-.+..-|.-+|.|||-|+.||.. ..|.|.+-.++ +.|.|.|||.|+-++||.=..-....|
T Consensus 22 GEVI~RP~NAlKEliENSLDA~S------------------T~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 22 GEVIQRPVNALKELIENSLDANS------------------TSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred cchhhchHHHHHHHHhccccCCC------------------ceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhh
Confidence 34666788999999999999962 36777764444 567899999999999987433344344
Q ss_pred chhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEe-eCCCCceEEEecCCCCCCCCCcc
Q 004444 192 GTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEG-EANASSYTIREETNPEKLLPRGT 270 (753)
Q Consensus 192 g~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s-~~~~~~y~i~~~~~~~~~~~~GT 270 (753)
--..|-+-. ..+-.|..|=.+ +...-.-+|+|+||...+. .-|.- ..+ |... ..+.+ -....||
T Consensus 84 KL~kFEDL~--------~lsTyGFRGEAL-ASiShVA~VtV~TK~~~~~--cayrasY~D-Gkm~--~~pKp-cAgk~GT 148 (694)
T KOG1979|consen 84 KLTKFEDLF--------SLSTYGFRGEAL-ASISHVAHVTVTTKTAEGK--CAYRASYRD-GKMI--ATPKP-CAGKQGT 148 (694)
T ss_pred hcchhHHHH--------hhhhcCccHHHH-hhhhheeEEEEEEeecCce--eeeEEEeec-cccc--cCCCC-ccCCCce
Confidence 333332211 123345555555 4444457999999985333 34442 233 4433 22322 2357899
Q ss_pred EEEEE-e-----------cCCCcCCCCHHHHHHHHHHhcCC
Q 004444 271 RLTLY-L-----------KHDDKGFAHPERIQKLVKNYSQF 299 (753)
Q Consensus 271 ~I~L~-L-----------k~~~~~~~~~~~i~~lik~ys~f 299 (753)
.|++. | +...+ +-.+|-.++.+|+-+
T Consensus 149 ~I~vedLFYN~~~Rrkal~~~~E---E~~ki~dlv~ryAIH 186 (694)
T KOG1979|consen 149 IITVEDLFYNMPTRRKALRNHAE---EYRKIMDLVGRYAIH 186 (694)
T ss_pred EEEehHhhccCHHHHHHhcCcHH---HHHHHHHHHHHHhee
Confidence 99985 2 11111 124677888888876
No 27
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.12 E-value=0.00022 Score=82.45 Aligned_cols=147 Identities=21% Similarity=0.257 Sum_probs=84.5
Q ss_pred CchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHH
Q 004444 118 NKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFL 197 (753)
Q Consensus 118 ~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~ 197 (753)
+-.-+++||++|+.||.+ ..|.|.++-..-.+.|.|+|+||+++||.. ||+ +.|-
T Consensus 21 sla~~VeElv~NSiDA~A------------------t~V~v~V~~~t~sv~ViDdG~G~~rdDl~~-lg~------ry~T 75 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDAEA------------------TCVAVRVNMETFSVQVIDDGFGMGRDDLEK-LGN------RYFT 75 (1142)
T ss_pred HHHHHHHHHHhhccccCc------------------eEEEEEecCceeEEEEEecCCCccHHHHHH-HHh------hhhh
Confidence 445699999999999974 245566666778899999999999999986 432 2222
Q ss_pred HHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEE-eeCCCCceEEEecCCCCCCCCCccEEEEE-
Q 004444 198 KAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWE-GEANASSYTIREETNPEKLLPRGTRLTLY- 275 (753)
Q Consensus 198 ~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~-s~~~~~~y~i~~~~~~~~~~~~GT~I~L~- 275 (753)
.+...-++. ......|..|=.++|.--++. .+|+|++.+...++... .-.+ ..-..-+.+. .+...||+|+++
T Consensus 76 SK~h~~ndl-~~~~tyGfRGeALasIsd~s~-l~v~skkk~r~~~~~~kk~~~g-s~~~~l~iD~--~R~~sGTtVtV~d 150 (1142)
T KOG1977|consen 76 SKCHSVNDL-ENPRTYGFRGEALASISDMSS-LVVISKKKNRTMKTFVKKFQSG-SALKALEIDV--TRASSGTTVTVYD 150 (1142)
T ss_pred hhceecccc-ccccccccchhhhhhhhhhhh-hhhhhhhcCCchhHHHHHHhcc-ccceeccccc--ccccCCcEEEeHH
Confidence 222111111 123457888877777655544 45667664444333211 1111 1122222222 356899999987
Q ss_pred e------cCCCcCCCCHHHHHHHHHH
Q 004444 276 L------KHDDKGFAHPERIQKLVKN 295 (753)
Q Consensus 276 L------k~~~~~~~~~~~i~~lik~ 295 (753)
| +.. ....++.+.-+-|++
T Consensus 151 lfY~lPVRRr-~k~~~P~k~fe~Ik~ 175 (1142)
T KOG1977|consen 151 LFYQLPVRRR-LKCMDPRKEFEKIKQ 175 (1142)
T ss_pred hhhcchhhhh-hhcCCHHHHHHHHHH
Confidence 2 211 123455555555554
No 28
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.03 E-value=0.0027 Score=54.59 Aligned_cols=86 Identities=24% Similarity=0.348 Sum_probs=56.5
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHh
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAM 200 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~ 200 (753)
..++||+.||.++... ....+.|.+..+...-.|.|.|+|.||+...+...+...+.+
T Consensus 3 ~~~~~ll~Na~~~~~~-------------~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~--------- 60 (103)
T cd00075 3 QVLLNLLSNAIKHTPE-------------GGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG--------- 60 (103)
T ss_pred HHHHHHHHHHHHhCcC-------------CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---------
Confidence 4789999999999742 022345555554444568999999999999887654322000
Q ss_pred hccccCCCCCCccccccchhheeecccC----EEEEEEe
Q 004444 201 KDSKDAGGDSNLIGQFGVGFYSAFLVSD----RVVVETK 235 (753)
Q Consensus 201 ~~~~~~~~~~~~IGqFGIGf~S~F~vad----kV~V~Tk 235 (753)
......+.+|+|++.+-.+++ .+.+.+.
T Consensus 61 -------~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~ 92 (103)
T cd00075 61 -------SRSRKGGGTGLGLSIVKKLVELHGGRIEVESE 92 (103)
T ss_pred -------CCCCCCCccccCHHHHHHHHHHcCCEEEEEeC
Confidence 112334689999998877776 5666543
No 29
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.85 E-value=0.002 Score=70.49 Aligned_cols=101 Identities=17% Similarity=0.336 Sum_probs=61.3
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHh
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAM 200 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~ 200 (753)
..+..||.||..+.. ....+.|.+..+.+.-.|+|+|||.||+.+++.+.+. .+.+
T Consensus 250 ~il~nLi~NA~k~~~--------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~----~f~~------ 305 (356)
T PRK10755 250 LLLRNLVENAHRYSP--------------EGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSK----AFVR------ 305 (356)
T ss_pred HHHHHHHHHHHhhCC--------------CCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCC----CeEe------
Confidence 357788888866531 1234555555555556799999999999999876321 1110
Q ss_pred hccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCccEEEEEecC
Q 004444 201 KDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLTLYLKH 278 (753)
Q Consensus 201 ~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT~I~L~Lk~ 278 (753)
.+ ..-|.+|+|++-|-.+++. . + |.+.+...+ ...||+|++.+..
T Consensus 306 -------~~-~~~~g~GlGL~i~~~i~~~------~-------------g-g~i~i~s~~-----~~~Gt~~~i~~p~ 350 (356)
T PRK10755 306 -------MD-SRYGGIGLGLSIVSRITQL------H-------------H-GQFFLQNRQ-----ERSGTRAWVWLPK 350 (356)
T ss_pred -------CC-CCCCCcCHHHHHHHHHHHH------C-------------C-CEEEEEECC-----CCCeEEEEEEecC
Confidence 00 1125689999877655431 1 1 445554322 1279999998754
No 30
>PRK10604 sensor protein RstB; Provisional
Probab=96.67 E-value=0.0036 Score=70.93 Aligned_cols=48 Identities=17% Similarity=0.323 Sum_probs=35.2
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCL 185 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l 185 (753)
.+..||.||..+. ...+.|.+..+.+.-.|+|+|||.||+.+++.+-+
T Consensus 323 vl~NLl~NAik~~----------------~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if 370 (433)
T PRK10604 323 VLDNLLNNALRYA----------------HSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVF 370 (433)
T ss_pred HHHHHHHHHHHhC----------------CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcC
Confidence 5778888887653 12355666666555679999999999999988743
No 31
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.63 E-value=0.0045 Score=69.58 Aligned_cols=48 Identities=23% Similarity=0.390 Sum_probs=35.4
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCL 185 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l 185 (753)
.+++||+||..+. ...+.|.+..+.+.-.|+|.|||.||+.+++.+.+
T Consensus 357 ~l~nli~NA~~~~----------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 404 (461)
T PRK09470 357 ALENIVRNALRYS----------------HTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIF 404 (461)
T ss_pred HHHHHHHHHHHhC----------------CCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhc
Confidence 5788888887653 12356666666555679999999999999887743
No 32
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.62 E-value=0.0027 Score=76.24 Aligned_cols=72 Identities=25% Similarity=0.337 Sum_probs=44.2
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHhh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~~ 201 (753)
.+.+||+||.++.. ....+.|++..+.+.-.|+|+|||.||+.+++.+.+..-..+
T Consensus 583 vl~nLl~NAik~~~--------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~---------- 638 (679)
T TIGR02916 583 VLGHLVQNALEATP--------------GEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDT---------- 638 (679)
T ss_pred HHHHHHHHHHHhCC--------------CCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCC----------
Confidence 56677777777641 123344555444445578999999999999855543211110
Q ss_pred ccccCCCCCCccccccchhheeecc
Q 004444 202 DSKDAGGDSNLIGQFGVGFYSAFLV 226 (753)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~v 226 (753)
.+ . +..|+|.+.+--+
T Consensus 639 ------~~-~--~G~GLGL~i~~~i 654 (679)
T TIGR02916 639 ------TK-G--AGMGIGVYECRQY 654 (679)
T ss_pred ------CC-C--CCcchhHHHHHHH
Confidence 11 1 5689999887554
No 33
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.59 E-value=0.0045 Score=69.88 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=46.2
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHhh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~~ 201 (753)
.+..||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+.+-..-+ +.
T Consensus 356 vl~nll~NAi~~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~-~~-------- 412 (466)
T PRK10549 356 LFNNLLENSLRYTD--------------SGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYR-TE-------- 412 (466)
T ss_pred HHHHHHHHHHHhCC--------------CCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCccc-CC--------
Confidence 45677777766631 12334555555544457899999999999988764322110 00
Q ss_pred ccccCCCCCCccccccchhheeeccc
Q 004444 202 DSKDAGGDSNLIGQFGVGFYSAFLVS 227 (753)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~va 227 (753)
. ......|..|+|++-+-.++
T Consensus 413 -~----~~~~~~~g~GlGL~iv~~i~ 433 (466)
T PRK10549 413 -G----SRNRASGGSGLGLAICLNIV 433 (466)
T ss_pred -C----CcCCCCCCCcHHHHHHHHHH
Confidence 0 11234567899998665443
No 34
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.53 E-value=0.007 Score=68.04 Aligned_cols=101 Identities=21% Similarity=0.199 Sum_probs=59.7
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHhh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~~ 201 (753)
.+.+||.||..+.. ....+.|.+..+.+.-.|+|+|||.||+.+++.+.+. ...+..
T Consensus 372 vl~nli~Na~~~~~--------------~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~-~~~~~~-------- 428 (475)
T PRK11100 372 ALGNLLDNAIDFSP--------------EGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFE-RFYSLP-------- 428 (475)
T ss_pred HHHHHHHHHHHhCC--------------CCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHH-HHccCC--------
Confidence 46777788776631 1233455555555556799999999999998886432 211110
Q ss_pred ccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCccEEEEEec
Q 004444 202 DSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLTLYLK 277 (753)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT~I~L~Lk 277 (753)
.....-+..|+|++.|-.++.. . + |.+.+... .+.||+|++.+.
T Consensus 429 ------~~~~~~~~~GlGL~i~~~~~~~------~-------------~-G~i~i~s~------~~~Gt~v~i~lp 472 (475)
T PRK11100 429 ------RPANGRKSTGLGLAFVREVARL------H-------------G-GEVTLRNR------PEGGVLATLTLP 472 (475)
T ss_pred ------CCCCCCCCcchhHHHHHHHHHH------C-------------C-CEEEEEEc------CCCeEEEEEEee
Confidence 0011224579999887554321 1 1 44555442 246999888864
No 35
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=96.48 E-value=0.0032 Score=54.97 Aligned_cols=80 Identities=24% Similarity=0.334 Sum_probs=52.2
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHh
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAM 200 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~ 200 (753)
..+.|++.||.++... ...+.|.+..+.....|.|.|+|.||+.+.+...+.... ++.
T Consensus 8 ~~~~~l~~n~~~~~~~--------------~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~-~~~------- 65 (111)
T smart00387 8 QVLSNLLDNAIKYTPE--------------GGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFF-RTD------- 65 (111)
T ss_pred HHHHHHHHHHHhcCCC--------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeE-ECC-------
Confidence 3678888888887631 234566666555556799999999999988877543211 110
Q ss_pred hccccCCCCCCccccccchhheeecccCE
Q 004444 201 KDSKDAGGDSNLIGQFGVGFYSAFLVSDR 229 (753)
Q Consensus 201 ~~~~~~~~~~~~IGqFGIGf~S~F~vadk 229 (753)
......++.|+|+..+-.++++
T Consensus 66 -------~~~~~~~~~g~gl~~~~~~~~~ 87 (111)
T smart00387 66 -------GRSRKIGGTGLGLSIVKKLVEL 87 (111)
T ss_pred -------CCCCCCCcccccHHHHHHHHHH
Confidence 1123457799999988766554
No 36
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.41 E-value=0.0073 Score=67.64 Aligned_cols=100 Identities=18% Similarity=0.252 Sum_probs=58.3
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHhh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~~ 201 (753)
.+.+||.||.++.. ....+.|.+..+.+.-.|+|.|||.||+.+.+.+.+-..-++..
T Consensus 357 ~~~nll~Nai~~~~--------------~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~-------- 414 (457)
T TIGR01386 357 AISNLLSNALRHTP--------------DGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDP-------- 414 (457)
T ss_pred HHHHHHHHHHHcCC--------------CCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCc--------
Confidence 46677777766531 12334555554444457999999999999988774422211110
Q ss_pred ccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCccEEEEEe
Q 004444 202 DSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLTLYL 276 (753)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT~I~L~L 276 (753)
.....-+..|+|++-+--++++ . + |++++.. + +.||+|+|.+
T Consensus 415 ------~~~~~~~g~GlGL~i~~~~~~~------~-------------~-G~~~~~~-~------~~G~~~~~~~ 456 (457)
T TIGR01386 415 ------ARSNSGEGTGLGLAIVRSIMEA------H-------------G-GRASAES-P------DGKTRFILRF 456 (457)
T ss_pred ------ccCCCCCCccccHHHHHHHHHH------C-------------C-CEEEEEe-C------CCceEEEEec
Confidence 0112245689999876544321 1 1 5566654 2 4788888875
No 37
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.30 E-value=0.0079 Score=67.52 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=36.3
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEE--cCCCcEEEEEeCCCCCCHHHHHHHH
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQT--DKDNGIITITDSGIGMTQQDLVDCL 185 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~~el~~~l 185 (753)
..|.+|+.||.++.... ......|.|.. +.+.-.|+|.|||+||+.+...+.|
T Consensus 390 ~vl~Nl~~NAik~~~~~------------~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF 444 (494)
T TIGR02938 390 SLFKALVDNAIEAMNIK------------GWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVF 444 (494)
T ss_pred HHHHHHHHHHHHHhhcc------------CCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhc
Confidence 37899999999997421 01122455543 3444578999999999998877644
No 38
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=96.24 E-value=0.0097 Score=70.95 Aligned_cols=159 Identities=17% Similarity=0.162 Sum_probs=90.4
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHH-------HHHhHhhhcch
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLV-------DCLGTIAQSGT 193 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~-------~~l~tIa~Sg~ 193 (753)
..+.|+|.||+|=... ..--.|.|.+++ ++.|+|.|||-||..+--. +.+.+.-.+|.
T Consensus 37 hlv~EIvdNavDE~~a--------------g~~~~I~V~i~~-dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGg 101 (637)
T TIGR01058 37 HLVWEIVDNSVDEVLA--------------GYADNITVTLHK-DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGG 101 (637)
T ss_pred eehhhhhcchhhhhhc--------------CCCcEEEEEEcC-CCeEEEEECCCcccCcccCcCCCccceeEEEEecccC
Confidence 4567999999995320 112367777774 5699999999999863111 11112222222
Q ss_pred hhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecC-CCCCCCCCccEE
Q 004444 194 AKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREET-NPEKLLPRGTRL 272 (753)
Q Consensus 194 ~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~-~~~~~~~~GT~I 272 (753)
+ | .++ .-.-.-|.-|+|.-.+=.++.+++|.++..+..-.-.|+..+. .+.+.. .+ ....+||+|
T Consensus 102 k-f----d~~----~ykvSGGlhGvG~svvNAlS~~~~V~v~r~gk~~~q~f~~Gg~----~~~~l~~~~-~~~~~GT~V 167 (637)
T TIGR01058 102 K-F----DQG----GYKTAGGLHGVGASVVNALSSWLEVTVKRDGQIYQQRFENGGK----IVQSLKKIG-TTKKTGTLV 167 (637)
T ss_pred c-C----CCC----cccccCCcccccccccceeeceEEEEEEECCEEEEEEEecCCc----CcCCccccc-CCCCCceEE
Confidence 1 1 000 1112358999999999999999999998733211234543111 111110 01 124689999
Q ss_pred EEEecCCCc--CCCCHHHHHHHHHHhcCCC-CcCeEEec
Q 004444 273 TLYLKHDDK--GFAHPERIQKLVKNYSQFV-SFPIYTWQ 308 (753)
Q Consensus 273 ~L~Lk~~~~--~~~~~~~i~~lik~ys~fl-~~PI~~~~ 308 (753)
+..-..+-- .-++.+.|++-++..+-.. ..-|++++
T Consensus 168 ~F~PD~~iF~~~~f~~d~l~~RlrelA~Ln~GL~I~l~d 206 (637)
T TIGR01058 168 HFHPDPTIFKTTQFNSNIIKERLKESAFLLKKLKLTFTD 206 (637)
T ss_pred EEEeCHHHcCCCccCHHHHHHHHHHHhccCCCcEEEEEe
Confidence 887654321 1246677777777666333 45666654
No 39
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.11 E-value=0.014 Score=65.87 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=47.1
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHh
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAM 200 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~ 200 (753)
..+..|++||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+.+-.. ....
T Consensus 320 ~vl~NLl~NAik~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~~~------- 377 (430)
T PRK11006 320 SAISNLVYNAVNHTP--------------EGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERF-YRVD------- 377 (430)
T ss_pred HHHHHHHHHHHhcCC--------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCc-cccc-------
Confidence 357788888888752 122344444444445579999999999999987643211 0000
Q ss_pred hccccCCCCCCccccccchhheeecc
Q 004444 201 KDSKDAGGDSNLIGQFGVGFYSAFLV 226 (753)
Q Consensus 201 ~~~~~~~~~~~~IGqFGIGf~S~F~v 226 (753)
+ ......|..|+|++-|-.+
T Consensus 378 ~------~~~~~~~G~GLGL~ivk~i 397 (430)
T PRK11006 378 K------ARSRQTGGSGLGLAIVKHA 397 (430)
T ss_pred C------CCCCCCCCCchHHHHHHHH
Confidence 0 1112336689999876555
No 40
>PLN03237 DNA topoisomerase 2; Provisional
Probab=96.06 E-value=0.023 Score=72.27 Aligned_cols=163 Identities=17% Similarity=0.222 Sum_probs=93.6
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHH--------HHhHhhhcc
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD--------CLGTIAQSG 192 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~--------~l~tIa~Sg 192 (753)
..+.|.|.||+|-... +...-.|.|.++.+++.|+|.|||-||..+ ++. .+.|.-..|
T Consensus 80 kifdEIldNAvDe~~r-------------~g~~~~I~V~I~~~~gsIsV~DnGRGIPV~-iH~~eg~~~pElIft~LhAG 145 (1465)
T PLN03237 80 KIFDEILVNAADNKQR-------------DPKMDSLRVVIDVEQNLISVYNNGDGVPVE-IHQEEGVYVPEMIFGHLLTS 145 (1465)
T ss_pred hhHHHHhhhhHhHHhh-------------cCCCCEEEEEEEcCCCEEEEEecCccccCC-CCCCCCCccceEEEEeeecc
Confidence 4788999999997521 112346888888788899999999999864 221 111122222
Q ss_pred hhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcE--EEEeeCCCCce-EEEecCCCCCCCCCc
Q 004444 193 TAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQY--VWEGEANASSY-TIREETNPEKLLPRG 269 (753)
Q Consensus 193 ~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~--~w~s~~~~~~y-~i~~~~~~~~~~~~G 269 (753)
.+ | .++ ...-.-|+-|+|...+=.++.+++|.++....+..| .|+.+.+...- .+.... ...+|
T Consensus 146 gk-F----dd~----~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~~~----~~~~G 212 (1465)
T PLN03237 146 SN-Y----DDN----EKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITKCK----KSENW 212 (1465)
T ss_pred cc-C----CCC----cceeeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceeccCC----CCCCc
Confidence 21 2 100 112346999999999999999999999731122333 56532120111 121111 13689
Q ss_pred cEEEEEecCCCc--CCCCHHHHHHHHHH---hcCCC--CcCeEEeccc
Q 004444 270 TRLTLYLKHDDK--GFAHPERIQKLVKN---YSQFV--SFPIYTWQEK 310 (753)
Q Consensus 270 T~I~L~Lk~~~~--~~~~~~~i~~lik~---ys~fl--~~PI~~~~~~ 310 (753)
|+|+..-...-- .-++.+.|..+.++ .+.|+ ..-|++++++
T Consensus 213 T~VtF~PD~eiF~~~~fd~D~l~~~~rRlrdLAa~LnkGlkI~LndeR 260 (1465)
T PLN03237 213 TKVTFKPDLAKFNMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNGKR 260 (1465)
T ss_pred eEEEEEECHHHhCCceEcHHHHHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 999876433211 11355555544333 34466 4677777654
No 41
>PRK10364 sensor protein ZraS; Provisional
Probab=96.01 E-value=0.016 Score=65.90 Aligned_cols=50 Identities=24% Similarity=0.299 Sum_probs=35.3
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCL 185 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l 185 (753)
.+..||.||.+|+. ....+.|.+..+.+.-.|+|.|||.||+.+.+.+.|
T Consensus 352 il~NLl~NA~k~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 401 (457)
T PRK10364 352 VLLNLYLNAIQAIG--------------QHGVISVTASESGAGVKISVTDSGKGIAADQLEAIF 401 (457)
T ss_pred HHHHHHHHHHHhcC--------------CCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHh
Confidence 46677888888852 123345555555555679999999999999887643
No 42
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=95.93 E-value=0.023 Score=65.34 Aligned_cols=53 Identities=17% Similarity=0.327 Sum_probs=36.6
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHH
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCL 185 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l 185 (753)
..+.+|+.||.+|+.. .....+.|.+..+.+.-.|.|.|||.||+.+++.+.|
T Consensus 436 ~vl~nLl~NAi~~~~~------------~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF 488 (542)
T PRK11086 436 TILGNLIENALEAVGG------------EEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIF 488 (542)
T ss_pred HHHHHHHHHHHHHhhc------------CCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHH
Confidence 3577999999999731 0122344444444444578999999999999887744
No 43
>PRK10815 sensor protein PhoQ; Provisional
Probab=95.87 E-value=0.021 Score=66.11 Aligned_cols=98 Identities=15% Similarity=0.237 Sum_probs=59.8
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHhh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~~ 201 (753)
.+.-||.||+.++. ..+.|.+..+.+.-.|+|.|||.||+.+++...|. .+.+
T Consensus 382 vl~NLi~NAik~~~----------------~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~----~f~~------- 434 (485)
T PRK10815 382 VMGNVLDNACKYCL----------------EFVEISARQTDEHLHIVVEDDGPGIPESKRELIFD----RGQR------- 434 (485)
T ss_pred HHHHHHHHHHHhcC----------------CcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhC----Cccc-------
Confidence 56677778777752 12455555544445799999999999999876431 1110
Q ss_pred ccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCccEEEEEecCC
Q 004444 202 DSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLTLYLKHD 279 (753)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT~I~L~Lk~~ 279 (753)
.+ ..-+..|+|++-|--+++ .+ + |.+.+... .+.||++++.+...
T Consensus 435 ------~~-~~~~G~GLGL~Ivk~iv~------~~-------------g-G~i~v~s~------~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 435 ------AD-TLRPGQGLGLSVAREITE------QY-------------E-GKISAGDS------PLGGARMEVIFGRQ 479 (485)
T ss_pred ------CC-CCCCCcchhHHHHHHHHH------Hc-------------C-CEEEEEEC------CCCEEEEEEEEcCC
Confidence 01 111357999987655532 11 1 45555532 25799999998754
No 44
>PRK09303 adaptive-response sensory kinase; Validated
Probab=95.52 E-value=0.038 Score=61.68 Aligned_cols=76 Identities=13% Similarity=0.232 Sum_probs=44.5
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCC-CcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKD-NGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAM 200 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~ 200 (753)
.|..||.||+.+.. ....+.|.+....+ .-.|+|.|||.||+.+++.+.| ....+ .
T Consensus 276 vl~NLl~NAik~~~--------------~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF----~pf~~----~- 332 (380)
T PRK09303 276 VLLNLLDNAIKYTP--------------EGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIF----EDRVR----L- 332 (380)
T ss_pred HHHHHHHHHHhcCC--------------CCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHc----cCcee----C-
Confidence 56778888877641 12223333332222 3468999999999999887643 11110 0
Q ss_pred hccccCCCCCCccccccchhheeeccc
Q 004444 201 KDSKDAGGDSNLIGQFGVGFYSAFLVS 227 (753)
Q Consensus 201 ~~~~~~~~~~~~IGqFGIGf~S~F~va 227 (753)
......+..|+|++-|..++
T Consensus 333 -------~~~~~~~G~GLGL~i~~~iv 352 (380)
T PRK09303 333 -------PRDEGTEGYGIGLSVCRRIV 352 (380)
T ss_pred -------CCCCCCCcccccHHHHHHHH
Confidence 01122356999998776653
No 45
>PLN03128 DNA topoisomerase 2; Provisional
Probab=95.41 E-value=0.034 Score=69.99 Aligned_cols=94 Identities=20% Similarity=0.285 Sum_probs=62.2
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHH-------HHHhHhhhcch
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLV-------DCLGTIAQSGT 193 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~-------~~l~tIa~Sg~ 193 (753)
..+.|.|.||+|-... +..--.|.|.++.+++.|+|.|||-||.-+--. +.+.|.-..|.
T Consensus 55 ki~dEIldNAvDe~~~-------------~g~~~~I~V~i~~~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGg 121 (1135)
T PLN03128 55 KIFDEILVNAADNKQR-------------DPSMDSLKVDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSS 121 (1135)
T ss_pred HHHHHHHHHHHHHhhh-------------cCCCcEEEEEEEcCCCeEEEEecCccccCCCCCCCCCccceEEEEeecccc
Confidence 4788999999997521 012237888888878899999999999864211 11111122222
Q ss_pred hhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEec
Q 004444 194 AKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKS 236 (753)
Q Consensus 194 ~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~ 236 (753)
+ | .++ ...-.-|+-|+|...+=.++.+++|.+..
T Consensus 122 k-F----dd~----~ykvSGGlhGvGasvvNaLS~~f~Vev~d 155 (1135)
T PLN03128 122 N-F----DDN----EKKTTGGRNGYGAKLANIFSTEFTVETAD 155 (1135)
T ss_pred c-c----CCc----cceeeccccCCCCeEEEeecCeEEEEEEE
Confidence 2 2 100 11234699999999999999999999984
No 46
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=95.35 E-value=0.039 Score=61.85 Aligned_cols=32 Identities=16% Similarity=0.366 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHH
Q 004444 154 LDIRIQTDKDNGIITITDSGIGMTQQDLVDCL 185 (753)
Q Consensus 154 ~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l 185 (753)
+.|.+..+.+.-.|+|.|||.||+.+++.+.+
T Consensus 351 i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~ 382 (435)
T PRK09467 351 IKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLF 382 (435)
T ss_pred EEEEEEecCCEEEEEEEecCCCcCHHHHHHhc
Confidence 44554444444579999999999999987643
No 47
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=95.33 E-value=0.045 Score=58.01 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=33.3
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCL 185 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l 185 (753)
.+.+||.||.++.. ....+.|.+..+.+.-.|.|.|||.||+.+.+...+
T Consensus 233 vl~nll~Nai~~~~--------------~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if 282 (333)
T TIGR02966 233 AFSNLVSNAIKYTP--------------EGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLT 282 (333)
T ss_pred HHHHHHHHhheeCC--------------CCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhc
Confidence 67788888776641 122234444444444569999999999999887643
No 48
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=95.30 E-value=0.037 Score=68.35 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=33.9
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCL 185 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l 185 (753)
.|..||+||..+.. ...+.|.+..+.+.-.|+|+|||+||+.+++.+.+
T Consensus 517 il~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 565 (921)
T PRK15347 517 ILVNLLGNAVKFTE---------------TGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIF 565 (921)
T ss_pred HHHHHHHHHhhcCC---------------CCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHh
Confidence 56678888887641 22345555544444578999999999999987643
No 49
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=95.23 E-value=0.071 Score=68.12 Aligned_cols=134 Identities=22% Similarity=0.310 Sum_probs=79.2
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHH--------HHhHhhhcc
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD--------CLGTIAQSG 192 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~--------~l~tIa~Sg 192 (753)
..+.|.|.||+|-..+ ++ .....-.|.|.++++.+.|+|.|||-||..+--.+ .|+++-.+|
T Consensus 60 ki~dEIldNAvDe~~r-------~~---~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGg 129 (1388)
T PTZ00108 60 KIFDEILVNAADNKAR-------DK---GGHRMTYIKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSS 129 (1388)
T ss_pred hhHHHHhhhhhhhhcc-------cC---CCCCccEEEEEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccc
Confidence 4788999999997531 00 01223478888888878999999999997642110 122222222
Q ss_pred hhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCC--cEEEEeeCC-CCceEEEecCCCCCCCCCc
Q 004444 193 TAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDK--QYVWEGEAN-ASSYTIREETNPEKLLPRG 269 (753)
Q Consensus 193 ~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~--~~~w~s~~~-~~~y~i~~~~~~~~~~~~G 269 (753)
+ | .++ ...-.-|+-|+|...+=.++.+++|.+.....+. .-.|+.... ...-.|.... ...+|
T Consensus 130 k--f----dd~----~yKvSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~~Gm~~~~~p~i~~~~----~~~~G 195 (1388)
T PTZ00108 130 N--Y----DDT----EKRVTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWTDNMSKKSEPRITSYD----GKKDY 195 (1388)
T ss_pred c--C----CCC----ceeeecccccCCccccccccceEEEEEEECCCCCEEEEEecCCCcCCCCCccCCCC----CCCCc
Confidence 2 1 100 1223479999999999999999999999841233 335653211 0011222111 11589
Q ss_pred cEEEEEecC
Q 004444 270 TRLTLYLKH 278 (753)
Q Consensus 270 T~I~L~Lk~ 278 (753)
|+|+..-..
T Consensus 196 T~VtF~PD~ 204 (1388)
T PTZ00108 196 TKVTFYPDY 204 (1388)
T ss_pred eEEEEEeCH
Confidence 998877443
No 50
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=95.17 E-value=0.05 Score=63.70 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=96.1
Q ss_pred chhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHH-------HHHhHhhhc
Q 004444 119 KEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLV-------DCLGTIAQS 191 (753)
Q Consensus 119 ~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~-------~~l~tIa~S 191 (753)
....+.|.|.||.|=.-. + .--.|.|.++ .++.|+|.|||-||.-+-=. +.+.|+-..
T Consensus 37 LhHlv~EVvDNsiDEala------------G--~~~~I~V~l~-~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHA 101 (635)
T COG0187 37 LHHLVWEVVDNSIDEALA------------G--YADRIDVTLH-EDGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHA 101 (635)
T ss_pred ceeeEeEeeechHhHHhh------------C--cCcEEEEEEc-CCCeEEEEECCCCCccccCCCCCCCceEEEEEeecc
Confidence 355788999999996421 1 2236777776 56899999999999875411 112233333
Q ss_pred chhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCccE
Q 004444 192 GTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTR 271 (753)
Q Consensus 192 g~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT~ 271 (753)
|.+ | .++ .-.-.=|--|||.--|=.++++++|.++..+.--.-.|+. |. ..-.+...... .....||+
T Consensus 102 GGK-F----d~~----~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk~y~q~f~~-G~-~~~~l~~ig~~-~~~~~GT~ 169 (635)
T COG0187 102 GGK-F----DND----SYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYRQRFER-GV-PVTPLEVIGST-DTKKTGTK 169 (635)
T ss_pred Ccc-c----CCC----ccEeecCCCccceEEEecccceEEEEEEECCEEEEEEEeC-CC-cCCCceecccC-CCCCCccE
Confidence 322 1 000 1112348899999888899999999998842211223332 11 11112211110 23478999
Q ss_pred EEEEecCCCc--CCCCHHHHHHHHHHhcCCC-CcCeEEeccc
Q 004444 272 LTLYLKHDDK--GFAHPERIQKLVKNYSQFV-SFPIYTWQEK 310 (753)
Q Consensus 272 I~L~Lk~~~~--~~~~~~~i~~lik~ys~fl-~~PI~~~~~~ 310 (753)
|+.+-.++-- .-.+...|++-++.++=.. ..-|.+.++.
T Consensus 170 V~F~PD~~iF~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~r 211 (635)
T COG0187 170 VRFKPDPEIFGETEFDYEILKRRLRELAFLNKGVKITLTDER 211 (635)
T ss_pred EEEEcChHhcCCcccCHHHHHHHHHHHhccCCCCEEEEEecc
Confidence 9877544321 1136778888888766554 4777776644
No 51
>PRK10337 sensor protein QseC; Provisional
Probab=94.94 E-value=0.055 Score=60.98 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=31.6
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCL 185 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l 185 (753)
.++.||.||..+.. .. ..|.|.... ..|+|.|||.||+.+++...+
T Consensus 356 vl~Nli~NA~k~~~--------------~~--~~i~i~~~~--~~i~i~D~G~Gi~~~~~~~if 401 (449)
T PRK10337 356 LVRNLLDNAIRYSP--------------QG--SVVDVTLNA--RNFTVRDNGPGVTPEALARIG 401 (449)
T ss_pred HHHHHHHHHHhhCC--------------CC--CeEEEEEEe--eEEEEEECCCCCCHHHHHHhc
Confidence 56778888777641 11 235554432 379999999999999988743
No 52
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=94.88 E-value=0.061 Score=66.56 Aligned_cols=72 Identities=25% Similarity=0.407 Sum_probs=45.6
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHhh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~~ 201 (753)
.|..||.||+.+.. .+.+.|.+..+...-.|.|.|||+||+.+++.+.|-. |...
T Consensus 565 il~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~--------f~~~-- 619 (914)
T PRK11466 565 VITNLLSNALRFTD---------------EGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQP--------FVQV-- 619 (914)
T ss_pred HHHHHHHHHHHhCC---------------CCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhch--------hhcC--
Confidence 56778888887641 2234555555544557999999999999998774421 1110
Q ss_pred ccccCCCCCCccccccchhheeecc
Q 004444 202 DSKDAGGDSNLIGQFGVGFYSAFLV 226 (753)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~v 226 (753)
....|..|+|++-|--+
T Consensus 620 --------~~~~~g~GLGL~i~~~l 636 (914)
T PRK11466 620 --------SGKRGGTGLGLTISSRL 636 (914)
T ss_pred --------CCCCCCCcccHHHHHHH
Confidence 11236789999866544
No 53
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=94.87 E-value=0.062 Score=62.31 Aligned_cols=104 Identities=18% Similarity=0.319 Sum_probs=61.2
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHhh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~~ 201 (753)
.+.+||.||.+|+.+. + .....+.|.+..+.+.-.|.|.|||.||+.++..+.|-. +.++
T Consensus 436 vl~nLl~NAi~~~~~~-------~---~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~-~~~t--------- 495 (545)
T PRK15053 436 IVGNLLDNAFEASLRS-------D---EGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQ-GVST--------- 495 (545)
T ss_pred HHHHHHHHHHHHHhhC-------C---CCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCC-CCCC---------
Confidence 5789999999997421 0 011223344333333456899999999999988764421 1111
Q ss_pred ccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCccEEEEEecC
Q 004444 202 DSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLTLYLKH 278 (753)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT~I~L~Lk~ 278 (753)
+. .--|..|+|++-+--+++. . + |.+.+... .+.||++++.|..
T Consensus 496 ------k~-~~~~g~GlGL~ivk~iv~~------~-------------~-G~i~v~s~------~~~Gt~f~i~lP~ 539 (545)
T PRK15053 496 ------RA-DEPGEHGIGLYLIASYVTR------C-------------G-GVITLEDN------DPCGTLFSIFIPK 539 (545)
T ss_pred ------CC-CCCCCceeCHHHHHHHHHH------c-------------C-CEEEEEEC------CCCeEEEEEEECC
Confidence 11 1124569999887655321 1 1 44555432 2588888888754
No 54
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=94.86 E-value=0.082 Score=64.42 Aligned_cols=87 Identities=24% Similarity=0.329 Sum_probs=52.2
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEc-CCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTD-KDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAM 200 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~ 200 (753)
.|..||.||.++.. ...+.|.+..+ .+.-.|+|.|||+||+.+++.+-|-...+ .
T Consensus 402 vl~NLl~NAik~~~---------------~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~-~-------- 457 (779)
T PRK11091 402 ILWNLISNAVKFTQ---------------QGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQ-V-------- 457 (779)
T ss_pred HHHHHHHHHHHhCC---------------CCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhc-c--------
Confidence 57789999988741 22345665554 33357899999999999988764422111 0
Q ss_pred hccccCCCCCCccccccchhheeeccc----CEEEEEEec
Q 004444 201 KDSKDAGGDSNLIGQFGVGFYSAFLVS----DRVVVETKS 236 (753)
Q Consensus 201 ~~~~~~~~~~~~IGqFGIGf~S~F~va----dkV~V~Tk~ 236 (753)
+.. ......|.-|+|+.-|-.+. -++.|.|..
T Consensus 458 ~~~----~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~ 493 (779)
T PRK11091 458 KDS----HGGKPATGTGIGLAVSKRLAQAMGGDITVTSEE 493 (779)
T ss_pred cCC----CCCCCCCCcchHHHHHHHHHHHcCCEEEEEecC
Confidence 000 12233567899998765442 445555543
No 55
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=94.71 E-value=0.094 Score=65.21 Aligned_cols=74 Identities=19% Similarity=0.353 Sum_probs=48.4
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCC-cEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDN-GIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAM 200 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~ 200 (753)
.|..||+||+.+.. .+.+.|.+....+. -.|.|.|||+||+.+++.+.|-. |.
T Consensus 583 il~nLi~NAik~~~---------------~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~--------f~--- 636 (968)
T TIGR02956 583 VLINLVGNAIKFTD---------------RGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDA--------FT--- 636 (968)
T ss_pred HHHHHHHHHHhhCC---------------CCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhh--------hh---
Confidence 67889999988741 23356666665555 67999999999999998774421 11
Q ss_pred hccccCCCCCCccccccchhheeecc
Q 004444 201 KDSKDAGGDSNLIGQFGVGFYSAFLV 226 (753)
Q Consensus 201 ~~~~~~~~~~~~IGqFGIGf~S~F~v 226 (753)
+ . ......|..|+|++-|-.+
T Consensus 637 ~-~----~~~~~~~g~GLGL~i~~~l 657 (968)
T TIGR02956 637 Q-A----DGRRRSGGTGLGLAISQRL 657 (968)
T ss_pred c-c----CCCCCCCCccHHHHHHHHH
Confidence 0 0 1112236789999866443
No 56
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=94.67 E-value=0.18 Score=63.11 Aligned_cols=86 Identities=20% Similarity=0.324 Sum_probs=52.2
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHhh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~~ 201 (753)
.|.-||+||..+.. ...+.|.+..+...-.|.|.|||+||+.+++.+.|-...+..
T Consensus 566 vl~NLl~NAik~t~---------------~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~--------- 621 (924)
T PRK10841 566 VISNLLSNAIKFTD---------------TGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVG--------- 621 (924)
T ss_pred HHHHHHHHHHhhCC---------------CCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCC---------
Confidence 67788888887741 123445555544445789999999999999876442111000
Q ss_pred ccccCCCCCCccccccchhheeeccc----CEEEEEEec
Q 004444 202 DSKDAGGDSNLIGQFGVGFYSAFLVS----DRVVVETKS 236 (753)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~va----dkV~V~Tk~ 236 (753)
. ......+..|+|+.-|-.++ -++.|.|..
T Consensus 622 ~-----~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~ 655 (924)
T PRK10841 622 T-----GVQRNFQGTGLGLAICEKLINMMDGDISVDSEP 655 (924)
T ss_pred C-----CCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcC
Confidence 0 11122356899998775443 456777654
No 57
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=94.58 E-value=0.036 Score=65.80 Aligned_cols=157 Identities=17% Similarity=0.125 Sum_probs=86.2
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHH--H--------HhHhhh
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD--C--------LGTIAQ 190 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~--~--------l~tIa~ 190 (753)
..+.|+|.||+|-..+ ++. ..--.|.|.++ ++.|+|.|||-||..+--.+ . +.+.-.
T Consensus 48 hi~~EIldNavDe~~~-------~~~----g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~Lh 114 (602)
T PHA02569 48 KIIDEIIDNSVDEAIR-------TNF----KFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTK 114 (602)
T ss_pred eeeehhhhhhhhhhhc-------cCC----CCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEEeec
Confidence 4667999999996421 110 12236777777 67999999999998643211 0 112222
Q ss_pred cchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCC-cEEEEeeCCCCceEEEecCCCCCCCCCc
Q 004444 191 SGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDK-QYVWEGEANASSYTIREETNPEKLLPRG 269 (753)
Q Consensus 191 Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~-~~~w~s~~~~~~y~i~~~~~~~~~~~~G 269 (753)
+|.+ | + + .-.-.-|.-|||.-.+=.++.+++|.++. +... ...|+. |. .+.+...+ ....+|
T Consensus 115 aGgk-F-d----~----~ykvSGGlhGVG~svvNaLS~~~~V~v~~-~~~~~~q~f~~----G~-~~~~~~~~-~~~~~G 177 (602)
T PHA02569 115 AGSN-F-D----D----TNRVTGGMNGVGSSLTNFFSVLFIGETCD-GKNEVTVNCSN----GA-ENISWSTK-PGKGKG 177 (602)
T ss_pred cccc-c-C----C----cceeeCCcCCccceeeeccchhhheEEEc-CCEEEEEEecC----Cc-ccCCcccC-CCCCCc
Confidence 3322 3 1 0 11124699999998888999999998865 2211 233432 21 11111112 234689
Q ss_pred cEEEEEecCCCcC--CCC---HHHHHHHHHHhcCCC--CcCeEEec
Q 004444 270 TRLTLYLKHDDKG--FAH---PERIQKLVKNYSQFV--SFPIYTWQ 308 (753)
Q Consensus 270 T~I~L~Lk~~~~~--~~~---~~~i~~lik~ys~fl--~~PI~~~~ 308 (753)
|+|+..-...--. -++ ...|.+-++..+ |+ ..-|++++
T Consensus 178 T~V~F~PD~~iF~~~~~~~~~~~~l~~Rl~elA-~Ln~Gl~I~l~d 222 (602)
T PHA02569 178 TSVTFIPDFSHFEVNGLDQQYLDIILDRLQTLA-VVFPDIKFTFNG 222 (602)
T ss_pred cEEEEEECHHHhCCCccCccHHHHHHHHHHHHh-cCCCCCEEEEEe
Confidence 9998875543211 022 344555555443 44 35666654
No 58
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=94.30 E-value=0.11 Score=63.12 Aligned_cols=79 Identities=16% Similarity=0.324 Sum_probs=47.6
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHhh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~~ 201 (753)
.+..||.||.++.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+.|-.. .+++.
T Consensus 601 il~NLI~NAik~s~--------------~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F-~t~~~------- 658 (703)
T TIGR03785 601 MLDKLVDNAREFSP--------------EDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSM-VSVRD------- 658 (703)
T ss_pred HHHHHHHHHHHHCC--------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCC-eecCC-------
Confidence 56788888887752 123345555555445569999999999999987643211 11110
Q ss_pred ccccCCCCCCccccccchhheeecccC
Q 004444 202 DSKDAGGDSNLIGQFGVGFYSAFLVSD 228 (753)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~vad 228 (753)
....--+..|+|++-|-.+++
T Consensus 659 ------~~~~~~~g~GLGL~Ivr~Iv~ 679 (703)
T TIGR03785 659 ------QGAQDQPHLGLGLYIVRLIAD 679 (703)
T ss_pred ------CCCCCCCCccHHHHHHHHHHH
Confidence 011112468999988755543
No 59
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=94.28 E-value=0.12 Score=59.60 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=33.1
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCC-cEEEEEeCCCCCCHHHHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDN-GIITITDSGIGMTQQDLVDC 184 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~el~~~ 184 (753)
.+.+||.||+.+.. ....+.|.+..+.+. -.|.|+|||+||+.+++...
T Consensus 504 ~~~nli~na~~~~~--------------~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~ 553 (607)
T PRK11360 504 VLLNILINAVQAIS--------------ARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKI 553 (607)
T ss_pred HHHHHHHHHHHHhc--------------CCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhh
Confidence 46777888877652 122344444444444 67999999999999988763
No 60
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=94.25 E-value=0.28 Score=60.61 Aligned_cols=88 Identities=20% Similarity=0.314 Sum_probs=53.6
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEc---------------CCCcEEEEEeCCCCCCHHHHHHHHh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTD---------------KDNGIITITDSGIGMTQQDLVDCLG 186 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d---------------~~~~~l~I~DnGiGMt~~el~~~l~ 186 (753)
.+..||.||+.++. ....+.|.+..+ .+.-.|.|.|||+||+.+++.+.|
T Consensus 564 vl~NLl~NAik~~~--------------~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iF- 628 (828)
T PRK13837 564 VLMNLCSNAAQAMD--------------GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIF- 628 (828)
T ss_pred HHHHHHHHHHHHcc--------------cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhh-
Confidence 57788888888763 123345555443 122368999999999999887633
Q ss_pred HhhhcchhhHHHHhhccccCCCCCCccccccchhheeeccc----CEEEEEEecCCCCCcEE
Q 004444 187 TIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVS----DRVVVETKSPKSDKQYV 244 (753)
Q Consensus 187 tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~va----dkV~V~Tk~~~~~~~~~ 244 (753)
.... . .+ . |..|+|++-|-.++ -++.|.|.. +.+..|.
T Consensus 629 ---e~F~-------~------~~-~--~G~GLGL~i~~~iv~~~gG~i~v~s~~-g~Gt~f~ 670 (828)
T PRK13837 629 ---EPFF-------T------TR-A--GGTGLGLATVHGIVSAHAGYIDVQSTV-GRGTRFD 670 (828)
T ss_pred ---CCcc-------c------CC-C--CCCcchHHHHHHHHHHCCCEEEEEecC-CCeEEEE
Confidence 1110 0 11 1 67899998765443 567777764 3343343
No 61
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=94.04 E-value=0.059 Score=53.15 Aligned_cols=88 Identities=20% Similarity=0.266 Sum_probs=52.7
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHH
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKA 199 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~ 199 (753)
..++.|++.||+....+. .....+.|.+....+.-.|.|.|+|.||+.+.+...+. .....
T Consensus 44 ~lav~Ea~~Nai~Hg~~~-----------~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~---p~~~~----- 104 (161)
T PRK04069 44 KIAVSEACTNAVQHAYKE-----------DEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLG---PYDIS----- 104 (161)
T ss_pred HHHHHHHHHHHHHhccCC-----------CCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccC---CCCCC-----
Confidence 358999999999987310 01234556666665666899999999999776543221 00000
Q ss_pred hhccccCCCCCCccccccchhheeecccCEEEEEE
Q 004444 200 MKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVET 234 (753)
Q Consensus 200 ~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~T 234 (753)
.....-..-|+|++-+=.++|++.+.+
T Consensus 105 --------~~~~~~~~~G~GL~li~~l~d~v~~~~ 131 (161)
T PRK04069 105 --------KPIEDLREGGLGLFLIETLMDDVTVYK 131 (161)
T ss_pred --------CcccccCCCceeHHHHHHHHHhEEEEc
Confidence 000111123777776667788877764
No 62
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=94.01 E-value=0.14 Score=63.28 Aligned_cols=86 Identities=17% Similarity=0.316 Sum_probs=50.4
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEc--CCC---cEEEEEeCCCCCCHHHHHHHHhHhhhcchhhH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTD--KDN---GIITITDSGIGMTQQDLVDCLGTIAQSGTAKF 196 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d--~~~---~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f 196 (753)
.|..||+||..+.. ...+.|.+... .+. -.|.|.|||+||+.+++.+.|-..-+..
T Consensus 412 vl~NLl~NAik~~~---------------~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~---- 472 (919)
T PRK11107 412 IITNLVGNAIKFTE---------------SGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQAD---- 472 (919)
T ss_pred HHHHHHHHHhhcCC---------------CCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCC----
Confidence 57788888887742 12344554432 121 3589999999999999876432111000
Q ss_pred HHHhhccccCCCCCCccccccchhheeeccc----CEEEEEEec
Q 004444 197 LKAMKDSKDAGGDSNLIGQFGVGFYSAFLVS----DRVVVETKS 236 (753)
Q Consensus 197 ~~~~~~~~~~~~~~~~IGqFGIGf~S~F~va----dkV~V~Tk~ 236 (753)
. ......|..|+|++-|-.++ -++.|.|..
T Consensus 473 ------~----~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~ 506 (919)
T PRK11107 473 ------A----SISRRHGGTGLGLVITQKLVNEMGGDISFHSQP 506 (919)
T ss_pred ------C----CCCCCCCCcchhHHHHHHHHHHhCCEEEEEecC
Confidence 0 11223477899998665443 456666654
No 63
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=94.00 E-value=0.17 Score=47.76 Aligned_cols=46 Identities=26% Similarity=0.273 Sum_probs=29.6
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCC
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMT 177 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt 177 (753)
..+.||++||..+. +. . .....+.|.+....+.-.|.|.|+|.||+
T Consensus 42 ~~l~eli~Nai~h~----~~---~----~~~~~I~v~~~~~~~~~~i~I~D~G~gi~ 87 (137)
T TIGR01925 42 TAVSEAVTNAIIHG----YE---E----NCEGVVYISATIEDHEVYITVRDEGIGIE 87 (137)
T ss_pred HHHHHHHHHHHHhc----cC---C----CCCcEEEEEEEEeCCEEEEEEEEcCCCcC
Confidence 47899999988542 11 0 01233455555554555689999999997
No 64
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=93.91 E-value=0.34 Score=60.38 Aligned_cols=93 Identities=16% Similarity=0.256 Sum_probs=54.2
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCC---CcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKD---NGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLK 198 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~---~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~ 198 (753)
.|.-||+||..+.. .+.+.|.+..... .-.|.|.|||+||+.+++.+-|-- |..
T Consensus 569 VL~NLL~NAik~t~---------------~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFeP--------F~t 625 (894)
T PRK10618 569 ILLLLLNYAITTTA---------------YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFP--------FLN 625 (894)
T ss_pred HHHHHHHHHHHhCC---------------CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCc--------ccc
Confidence 56778999887741 1234444443222 246899999999999998874321 111
Q ss_pred HhhccccCCCCCCccccccchhheeecc----cCEEEEEEecCCCCCcEEE
Q 004444 199 AMKDSKDAGGDSNLIGQFGVGFYSAFLV----SDRVVVETKSPKSDKQYVW 245 (753)
Q Consensus 199 ~~~~~~~~~~~~~~IGqFGIGf~S~F~v----adkV~V~Tk~~~~~~~~~w 245 (753)
. + .....-+.-|+|+.-|--+ +-++.|.|.. +.+..|..
T Consensus 626 ~-~------~~~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~-g~GT~F~I 668 (894)
T PRK10618 626 Q-T------QGDRYGKASGLTFFLCNQLCRKLGGHLTIKSRE-GLGTRYSI 668 (894)
T ss_pred C-C------CCCCCCCCcChhHHHHHHHHHHcCCEEEEEECC-CCcEEEEE
Confidence 0 0 1111224579998766543 4678888875 44444443
No 65
>PRK10490 sensor protein KdpD; Provisional
Probab=93.91 E-value=0.14 Score=63.82 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=34.3
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCL 185 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l 185 (753)
.+..||.||+.+.. ....+.|.+..+.+.-.|.|.|||.||+.+++.+.|
T Consensus 782 VL~NLL~NAik~s~--------------~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IF 831 (895)
T PRK10490 782 VLINLLENAVKYAG--------------AQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIF 831 (895)
T ss_pred HHHHHHHHHHHhCC--------------CCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhc
Confidence 57788888877741 123344555544445578999999999999877643
No 66
>PRK09835 sensor kinase CusS; Provisional
Probab=93.52 E-value=0.13 Score=58.38 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=32.3
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDC 184 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~ 184 (753)
.++.||.||+.+.. ....+.|.+..+.+.-.|.|.|||.||+.+++...
T Consensus 379 vl~nll~Na~~~~~--------------~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~i 427 (482)
T PRK09835 379 AISNLLSNALRYTP--------------AGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRL 427 (482)
T ss_pred HHHHHHHHHHhcCC--------------CCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHH
Confidence 45666666665531 12234555555545557999999999999988764
No 67
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=93.47 E-value=0.082 Score=64.56 Aligned_cols=169 Identities=17% Similarity=0.192 Sum_probs=91.9
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHH-------HHHhHhhhcc
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLV-------DCLGTIAQSG 192 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~-------~~l~tIa~Sg 192 (753)
...+.|+|.||+|=... ..--.|.|.+++ ++.|+|+|||-||.-+.-. +.+.|+-.+|
T Consensus 131 hhLv~EIlDNSVDE~la--------------G~~~~I~V~i~~-DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAG 195 (903)
T PTZ00109 131 HQLLFEILDNSVDEYLA--------------GECNKITVVLHK-DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSG 195 (903)
T ss_pred eEEEEEEeeccchhhcc--------------CCCcEEEEEEcC-CCeEEEEeCCccccccccccCCCcceeEEEEEeccC
Confidence 34788999999995421 112367777765 4799999999999874321 1122334444
Q ss_pred hhhHHHHh----hcc--------------------------ccC-CCC-CCccccccchhheeecccCEEEEEEecCCCC
Q 004444 193 TAKFLKAM----KDS--------------------------KDA-GGD-SNLIGQFGVGFYSAFLVSDRVVVETKSPKSD 240 (753)
Q Consensus 193 ~~~f~~~~----~~~--------------------------~~~-~~~-~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~ 240 (753)
.+ |-... ... .+. ... .-.-|.-|||.-.+=.++.+++|.++..+.-
T Consensus 196 GK-F~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdGK~ 274 (903)
T PTZ00109 196 GK-FQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGGKI 274 (903)
T ss_pred cc-ccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECCEE
Confidence 32 21100 000 000 001 1247899999988889999999999883221
Q ss_pred CcEEEEeeCC-CCceEEEecCCCCCCCCCccEEEEEec-CCCc-C-C--------------CCHHHHHHHHHHhcCCC-C
Q 004444 241 KQYVWEGEAN-ASSYTIREETNPEKLLPRGTRLTLYLK-HDDK-G-F--------------AHPERIQKLVKNYSQFV-S 301 (753)
Q Consensus 241 ~~~~w~s~~~-~~~y~i~~~~~~~~~~~~GT~I~L~Lk-~~~~-~-~--------------~~~~~i~~lik~ys~fl-~ 301 (753)
-.-.|+. |. .....+... ....+||+|+..-. +.-- . . ++.+.|++-++.++-.- .
T Consensus 275 y~q~F~r-G~~v~pLkvig~----~~~~tGT~VtF~PD~~~IF~~~~~~~~~~~~~~~~~~F~~d~L~~RLrElAfLNpG 349 (903)
T PTZ00109 275 YSIELSK-GKVTKPLSVFSC----PLKKRGTTIHFLPDYKHIFKTHHQHTETEEEEGCKNGFNLDLIKNRIHELSYLNPG 349 (903)
T ss_pred EEEEeCC-CcccCCccccCC----cCCCCceEEEEEeCcchhcCccccccccccccccccccCHHHHHHHHHHHhccCCC
Confidence 1223321 11 011111111 11368999988765 4311 1 1 25566777777666332 4
Q ss_pred cCeEEecc
Q 004444 302 FPIYTWQE 309 (753)
Q Consensus 302 ~PI~~~~~ 309 (753)
.-|++.++
T Consensus 350 L~I~L~De 357 (903)
T PTZ00109 350 LTFYLVDE 357 (903)
T ss_pred cEEEEEec
Confidence 56666543
No 68
>PRK03660 anti-sigma F factor; Provisional
Probab=93.47 E-value=0.22 Score=47.49 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=30.4
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCH
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQ 178 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~ 178 (753)
...+.|++.||+... +.. .....+.|.+......-.++|.|+|.||+.
T Consensus 41 ~~~l~eli~Nai~h~----~~~-------~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 41 KTAVSEAVTNAIIHG----YEN-------NPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HHHHHHHHHHHHHHh----cCC-------CCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 457899999988542 110 011234555555444456899999999974
No 69
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=93.35 E-value=0.13 Score=59.37 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=46.5
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHhh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~~ 201 (753)
.|.=||-||.||..+ . .....+.+.+..+.+.-.|.|.|||+||+.+.... +-..|.|.+
T Consensus 431 IlGNLidNA~eA~~~------~-----~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~-iFe~G~Stk-------- 490 (537)
T COG3290 431 ILGNLIDNALEALLA------P-----EENKEIELSLSDRGDELVIEVADTGPGIPPEVRDK-IFEKGVSTK-------- 490 (537)
T ss_pred HHHHHHHHHHHHhhc------c-----CCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHH-HHhcCcccc--------
Confidence 556699999999852 0 12233444444444445679999999999988775 333444332
Q ss_pred ccccCCCCCCccccccchhhee
Q 004444 202 DSKDAGGDSNLIGQFGVGFYSA 223 (753)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~ 223 (753)
-.|.-|+|+|=+
T Consensus 491 ----------~~~~rGiGL~Lv 502 (537)
T COG3290 491 ----------NTGGRGIGLYLV 502 (537)
T ss_pred ----------CCCCCchhHHHH
Confidence 147789999754
No 70
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=93.31 E-value=0.2 Score=64.00 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=57.7
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEE---cCCC--cEEEEEeCCCCCCHHHHHHHHhHhhhcchhhH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQT---DKDN--GIITITDSGIGMTQQDLVDCLGTIAQSGTAKF 196 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~---d~~~--~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f 196 (753)
.+..||.||+++.. ...+.|.+.. +.+. -.|+|.|||+||+.+++.+-|-.. ..+
T Consensus 832 vl~NLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f-~~~---- 891 (1197)
T PRK09959 832 VLSNLLSNALKFTT---------------EGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRY-SQT---- 891 (1197)
T ss_pred HHHHHHHHHHHhCC---------------CCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhccc-ccc----
Confidence 67899999998862 1223344332 2222 247899999999999987643211 000
Q ss_pred HHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCccEEEEEe
Q 004444 197 LKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLTLYL 276 (753)
Q Consensus 197 ~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT~I~L~L 276 (753)
......+..|+|++-|-.+++ .+ + |.+.+... .+.||++++.|
T Consensus 892 -----------~~~~~~~G~GLGL~i~~~iv~------~~-------------g-G~i~v~s~------~~~Gt~f~i~l 934 (1197)
T PRK09959 892 -----------SAGRQQTGSGLGLMICKELIK------NM-------------Q-GDLSLESH------PGIGTTFTITI 934 (1197)
T ss_pred -----------ccCCCCCCcCchHHHHHHHHH------Hc-------------C-CEEEEEeC------CCCcEEEEEEE
Confidence 011123568999987655531 11 1 44555432 25799998887
Q ss_pred c
Q 004444 277 K 277 (753)
Q Consensus 277 k 277 (753)
-
T Consensus 935 P 935 (1197)
T PRK09959 935 P 935 (1197)
T ss_pred E
Confidence 4
No 71
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=93.13 E-value=0.11 Score=60.58 Aligned_cols=63 Identities=30% Similarity=0.439 Sum_probs=43.2
Q ss_pred chhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCH
Q 004444 99 EYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQ 178 (753)
Q Consensus 99 ~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~ 178 (753)
-..++--||-.+|+| |||||.||++. .....+.|+...+.+.-.|+|.|||.|+..
T Consensus 490 ~V~~~~iRLeQVLvN------------Ll~NALDA~~~------------~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~ 545 (603)
T COG4191 490 WVMANEIRLEQVLVN------------LLQNALDAMAG------------QEDRRLSIRAQREGGQVVLTVRDNGPGIAP 545 (603)
T ss_pred eeecchhhHHHHHHH------------HHHHHHHHhcC------------CCCCeeEEEEEecCCeEEEEEccCCCCCCH
Confidence 334444566667777 99999999952 012334455455555667999999999999
Q ss_pred HHHHHHH
Q 004444 179 QDLVDCL 185 (753)
Q Consensus 179 ~el~~~l 185 (753)
+-+...|
T Consensus 546 e~~~~lF 552 (603)
T COG4191 546 EALPHLF 552 (603)
T ss_pred HHHHhhc
Confidence 8877643
No 72
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=92.92 E-value=0.14 Score=47.62 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=54.2
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHH
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKA 199 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~ 199 (753)
..++.|++.||+.+...- .....+.|.+..+.+.-.|.|+|+|.|++...+.... .
T Consensus 33 ~lav~E~~~Nav~H~~~~-----------~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~-------~------ 88 (125)
T PF13581_consen 33 ELAVSEALTNAVEHGYPG-----------DPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPD-------P------ 88 (125)
T ss_pred HHHHHHHHHHHHHHcCCC-----------CCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCcc-------c------
Confidence 458999999999997310 0123455666677777789999999998887654310 0
Q ss_pred hhccccCCCCCCccccccchhheeecccCEEEE
Q 004444 200 MKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVV 232 (753)
Q Consensus 200 ~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V 232 (753)
........-|.|++=+=.++|++.+
T Consensus 89 --------~~~~~~~~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 89 --------WEPDSLREGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred --------ccCCCCCCCCcCHHHHHHHHcEEEE
Confidence 0113344556777777778899988
No 73
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=92.38 E-value=0.17 Score=52.65 Aligned_cols=48 Identities=25% Similarity=0.437 Sum_probs=34.7
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHH
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD 183 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~ 183 (753)
..+..||.||.+|+. .+.+.|.+....+.-.|.|.|||.||+.+++..
T Consensus 231 ~vl~nLi~NAi~~~~---------------~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~ 278 (336)
T COG0642 231 QVLVNLLSNAIKYTP---------------GGEITISVRQDDEQVTISVEDTGPGIPEEELER 278 (336)
T ss_pred HHHHHHHHHHhccCC---------------CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHH
Confidence 368899999999972 123444444433346799999999999999655
No 74
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=92.25 E-value=0.32 Score=56.92 Aligned_cols=52 Identities=21% Similarity=0.423 Sum_probs=37.9
Q ss_pred HHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCc--EEEEEeCCCCCCHHHHHHH
Q 004444 124 RELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNG--IITITDSGIGMTQQDLVDC 184 (753)
Q Consensus 124 RELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~--~l~I~DnGiGMt~~el~~~ 184 (753)
--||+||.+|++.+.... .....|+++.|..+. .+.|+|||.|++.+.+.+.
T Consensus 606 ~NliKNA~EAi~~~~~~e---------~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~ 659 (712)
T COG5000 606 GNLLKNAAEAIEAVEAEE---------RRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRA 659 (712)
T ss_pred HHHHHhHHHHhhhccccc---------CCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhh
Confidence 348999999998763321 111267888776554 4699999999999998874
No 75
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=92.08 E-value=0.21 Score=49.20 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=54.2
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHH
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKA 199 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~ 199 (753)
..++.|++.||+.+.-. . .....+.|.+..+.+.-.|.|+|+|.||+...+..-+. .....
T Consensus 44 ~lav~Ea~~Nai~ha~~-------~----~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~---~~~~~----- 104 (159)
T TIGR01924 44 KIAVSEACTNAVKHAYK-------E----GENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLG---PYDGS----- 104 (159)
T ss_pred HHHHHHHHHHHHHhccC-------C----CCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccC---CCCCC-----
Confidence 35899999999988621 0 11234556655655556788999999998776553111 00000
Q ss_pred hhccccCCCCCCccccccchhheeecccCEEEEEE
Q 004444 200 MKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVET 234 (753)
Q Consensus 200 ~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~T 234 (753)
........-|.|++-+=-++|.+.+.+
T Consensus 105 --------~~~~~~~~~G~GL~Li~~L~D~v~~~~ 131 (159)
T TIGR01924 105 --------EPIDDLREGGLGLFLIETLMDEVEVYE 131 (159)
T ss_pred --------CCcccCCCCccCHHHHHHhccEEEEEe
Confidence 011111234888888888899988875
No 76
>PRK10547 chemotaxis protein CheA; Provisional
Probab=90.78 E-value=1.1 Score=54.07 Aligned_cols=53 Identities=23% Similarity=0.287 Sum_probs=33.6
Q ss_pred HHHhHHhHHHHHH----HHHhhccCCCcccCCCCCccEEEEE--cCCCcEEEEEeCCCCCCHHHHHH
Q 004444 123 LRELISNASDALD----KLRYLGVTEPELLKDAVDLDIRIQT--DKDNGIITITDSGIGMTQQDLVD 183 (753)
Q Consensus 123 lRELIqNA~DA~~----k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~~el~~ 183 (753)
|..||.||.|+.- .|+... ......|.|.. ..+.-.|+|.|+|.||+.+.+.+
T Consensus 390 L~hLirNAidHgie~p~~R~~~g--------kp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~ 448 (670)
T PRK10547 390 LTHLVRNSLDHGIELPEKRLAAG--------KNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILA 448 (670)
T ss_pred HHHHHHHHHHhhccchhhHHhcC--------CCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 5689999999962 222111 11223455543 33344689999999999988764
No 77
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=89.76 E-value=0.0041 Score=71.70 Aligned_cols=235 Identities=8% Similarity=-0.095 Sum_probs=148.3
Q ss_pred HHHHhhhccCChHHHHHHHHHHhHHhhhcccCCccChhhccCccceeeccCCCcccCHHHHHhhcCCCCceEEEEecCCH
Q 004444 487 DMILGISMSENRADYEKFWENFGKYLKMGCIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAADSV 566 (753)
Q Consensus 487 ~~L~~la~~~d~e~y~~f~~~fg~~lK~G~~eD~~~~e~l~~LLrF~Ss~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~~~ 566 (753)
+.+-++. .+...+.++|+.|...+..++-++-.....--... +.....-...-|.+++ .+.+++...++....+.
T Consensus 367 ~k~l~~~--~e~a~d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~-~a~lLry~ss~s~~~~--~Sl~dYv~rm~~~qk~i 441 (656)
T KOG0019|consen 367 QKILEMF--QDLAKDAEKYKKFFKNYGLFLKEGIVTASEQQVKE-IAKLLRYESSKSGEGA--TSLDDYVERMREGQKNI 441 (656)
T ss_pred HHHHHHH--HHHhhhHHHHHHHHHHHhhhhhhcccchhhhhhhH-HHHHhhhhcccccccc--ccHHHHHHhhcccccce
Confidence 3344444 35568899999999998888877644433322222 1111111234566666 55566777777777666
Q ss_pred HHHhcChhHHHhhhcCceEEEecCCCcHHHHHHhhhcCCcceEeccccccCcCCCchHHH---HhhHHHHHHHHHHHHHH
Q 004444 567 ASARNTPFLEKLLEKDLEVLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGEKNEEKE---KVMKEEFGQTCDWIKKR 643 (753)
Q Consensus 567 ~~~~~sp~~E~~~~kg~eVL~l~dpiDE~~l~~L~~y~~~~f~~V~~~~l~l~~~~e~~~---~~~~~e~~~L~~~lk~~ 643 (753)
-.+.......+-.+-+||++..-++.+.||++.+.+|....++......+....++..+. ++.+........-++ .
T Consensus 442 yyi~~~s~~~~~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee~k~efe-~ 520 (656)
T KOG0019|consen 442 YYITAPNRQLAESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEESKKEFE-E 520 (656)
T ss_pred EEeccchhhhhhcchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHHHHHHHH-H
Confidence 566666666677778899999999999999999999988888887776664332221111 111111222211222 2
Q ss_pred hCCceeEEEEeecCCCCCeEEEecCCCchHHHHHHHHHhccCCCCccccccCceeEEECCCChHHHHHHhhhcCCCCchh
Q 004444 644 LGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDND 723 (753)
Q Consensus 644 L~~kV~~V~vS~rL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLIk~L~~~~~~~~~d~~ 723 (753)
|-.- ++.+|.+ +|+-|+..+.++.++..++..+-.-.+.+...|.++...+.|+.|-+.. .+..+.||+.+.
T Consensus 521 lck~-----mK~iL~~-kVekV~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~--kk~lEINP~hpi 592 (656)
T KOG0019|consen 521 LCKW-----MKEILGS-KVEKVTVNNRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKA--KKHLEINPDHPL 592 (656)
T ss_pred HHHH-----HHHHhcC-ceEEEEecCcccCCceEEEecccccchhHHHHHhhhhccccChhhhccc--cceeeeCCCChH
Confidence 2111 4477887 8777777788888888877655221344456677889999999998876 344456788888
Q ss_pred HHHHHHHHHHHH
Q 004444 724 ALRVVDLLYDAA 735 (753)
Q Consensus 724 ~~~l~~~Lyd~A 735 (753)
++.+-...+...
T Consensus 593 vk~L~~~~~~dk 604 (656)
T KOG0019|consen 593 VKTLRQLRESDK 604 (656)
T ss_pred HHHHHHHHhcCc
Confidence 888766655433
No 78
>PRK13557 histidine kinase; Provisional
Probab=88.99 E-value=1.4 Score=50.37 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=16.4
Q ss_pred EEEEEeCCCCCCHHHHHHH
Q 004444 166 IITITDSGIGMTQQDLVDC 184 (753)
Q Consensus 166 ~l~I~DnGiGMt~~el~~~ 184 (753)
.|+|.|||.||+.++...-
T Consensus 326 ~i~v~D~G~Gi~~~~~~~i 344 (540)
T PRK13557 326 SIAVTDTGSGMPPEILARV 344 (540)
T ss_pred EEEEEcCCCCCCHHHHHhc
Confidence 6899999999999887653
No 79
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=88.45 E-value=0.44 Score=56.06 Aligned_cols=43 Identities=21% Similarity=0.424 Sum_probs=27.7
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQ 179 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~ 179 (753)
.++|+|+||..+. ....+.|.+..+.+.-.|+|.|||+||+.+
T Consensus 473 il~ell~NA~kha---------------~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 473 IAREALSNALKHA---------------QASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHhC---------------CCCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 4677777765543 122345555555444578999999999864
No 80
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=88.24 E-value=0.85 Score=47.62 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=38.4
Q ss_pred cchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCC--cEEEEEeCCCC
Q 004444 98 YEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDN--GIITITDSGIG 175 (753)
Q Consensus 98 ~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~--~~l~I~DnGiG 175 (753)
..+..|+..=|-| ++-||++||.-... +. ...+.++|.+..+.+. ..++|+|||.|
T Consensus 113 ~~l~~d~A~~Lgl-----------iv~EL~tNa~Khaf------~~-----~~~G~I~I~~~~~~~~~~~~l~v~deg~G 170 (221)
T COG3920 113 VFLDPDTAVPLGL-----------IVHELVTNALKHAF------LS-----RPGGEIRITLSREGDGGRFLLTVWDEGGG 170 (221)
T ss_pred eEECchhhHHHHH-----------HHHHHHHHHHHhcC------CC-----CCCCEEEEEEEEcCCCCeEEEEEEECCCC
Confidence 5666665433333 56699999987752 11 1234455555565554 58999999999
Q ss_pred CCHH
Q 004444 176 MTQQ 179 (753)
Q Consensus 176 Mt~~ 179 (753)
+..+
T Consensus 171 ~~~~ 174 (221)
T COG3920 171 PPVE 174 (221)
T ss_pred CCCC
Confidence 8764
No 81
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=88.15 E-value=0.44 Score=55.41 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=27.7
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQ 178 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~ 178 (753)
.+.|++.||..+.. ...+.|++..+.+.-.|+|+|||.||+.
T Consensus 414 il~nlL~NAiKha~---------------~~~I~I~l~~~~~~i~l~V~DnG~Gi~~ 455 (495)
T PRK11644 414 VCQEGLNNIVKHAD---------------ASAVTLQGWQQDERLMLVIEDDGSGLPP 455 (495)
T ss_pred HHHHHHHHHHHhCC---------------CCEEEEEEEEcCCEEEEEEEECCCCCCc
Confidence 46788888776541 2234555544444457999999999974
No 82
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=87.94 E-value=0.77 Score=55.76 Aligned_cols=128 Identities=19% Similarity=0.219 Sum_probs=73.8
Q ss_pred HHHHhHHhHHHHHH----HHHhhccCCCcccCCCCCccEEEEEcCC-C-cEEEEEeCCCCCCHHHHHHHHhHhhhcchhh
Q 004444 122 FLRELISNASDALD----KLRYLGVTEPELLKDAVDLDIRIQTDKD-N-GIITITDSGIGMTQQDLVDCLGTIAQSGTAK 195 (753)
Q Consensus 122 flRELIqNA~DA~~----k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~-~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~ 195 (753)
.|.=||=||+|.+- .|+.. +......|.+..-.. + -.|+|+|+|-|++.+-|.+.-..=|--....
T Consensus 436 PL~HLvRNAvDHGIE~pE~R~a~--------GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~ 507 (716)
T COG0643 436 PLTHLVRNAVDHGIETPEERRAA--------GKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEE 507 (716)
T ss_pred cHHHHHhcchhccCCCHHHHHHc--------CCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHH
Confidence 56778999999972 33322 344567788875433 3 3579999999999999876421100000000
Q ss_pred HHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEE---EEeeCCCCceEEEecCCCCCCCCCccEE
Q 004444 196 FLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYV---WEGEANASSYTIREETNPEKLLPRGTRL 272 (753)
Q Consensus 196 f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~---w~s~~~~~~y~i~~~~~~~~~~~~GT~I 272 (753)
.+.+. +.. =+.+=|..+|.-|++|+=.|.+ |-+.-++ .+.- + |...|... .+.||++
T Consensus 508 -a~~lS-------d~E---i~~LIF~PGFSTa~~VtdvSGR-GVGMDVVk~~I~~L-g-G~I~V~S~------~G~GT~F 567 (716)
T COG0643 508 -AETLS-------DEE---ILNLIFAPGFSTAEQVTDVSGR-GVGMDVVKTNIEQL-G-GSISVSSE------PGKGTTF 567 (716)
T ss_pred -hccCC-------HHH---HHHHHhcCCCCcchhhhcccCC-ccCHHHHHHHHHHc-C-CEEEEEec------CCCCeEE
Confidence 00011 110 1223367788888998877776 4443111 1111 2 56666642 4799999
Q ss_pred EEEec
Q 004444 273 TLYLK 277 (753)
Q Consensus 273 ~L~Lk 277 (753)
+|+|-
T Consensus 568 ti~LP 572 (716)
T COG0643 568 TIRLP 572 (716)
T ss_pred EEecC
Confidence 99975
No 83
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=87.08 E-value=1.9 Score=42.17 Aligned_cols=84 Identities=25% Similarity=0.349 Sum_probs=53.2
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHH
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKA 199 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~ 199 (753)
.+++-|++.||+.+.-+. + .+...+.|.+..+.+.-.++|+|.|.|+ +++...++-
T Consensus 42 ~~av~E~~~N~v~Ha~~~------~----~~~g~I~i~~~~~~~~~~i~i~D~G~~~--~~~~~~~~~------------ 97 (146)
T COG2172 42 AIAVSEALTNAVKHAYKL------D----PSEGEIRIEVSLDDGKLEIRIWDQGPGI--EDLEESLGP------------ 97 (146)
T ss_pred HHHHHHHHHHHHHHHhhc------C----CCCceEEEEEEEcCCeEEEEEEeCCCCC--CCHHHhcCC------------
Confidence 579999999999987431 1 1224566666777777889999999664 444443311
Q ss_pred hhccccCCCCCCcccc---ccchhheeecccCEEEEEEec
Q 004444 200 MKDSKDAGGDSNLIGQ---FGVGFYSAFLVSDRVVVETKS 236 (753)
Q Consensus 200 ~~~~~~~~~~~~~IGq---FGIGf~S~F~vadkV~V~Tk~ 236 (753)
.....+. -|.||+-+=-+.|+|.+....
T Consensus 98 ---------~~~~~~~~~~~G~Gl~l~~~~~D~~~~~~~~ 128 (146)
T COG2172 98 ---------GDTTAEGLQEGGLGLFLAKRLMDEFSYERSE 128 (146)
T ss_pred ---------CCCCCcccccccccHHHHhhhheeEEEEecc
Confidence 1112222 267776666677888887544
No 84
>PRK13560 hypothetical protein; Provisional
Probab=87.05 E-value=0.64 Score=56.12 Aligned_cols=45 Identities=24% Similarity=0.379 Sum_probs=30.0
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCC---CcEEEEEeCCCCCCHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKD---NGIITITDSGIGMTQQ 179 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~---~~~l~I~DnGiGMt~~ 179 (753)
.|.+|++||+.+... ......|.|..... .-.|+|.|||+||+.+
T Consensus 715 il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 715 IISELLSNALKHAFP-------------DGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHhhcc-------------CCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 678999999987521 11223455554322 2468999999999874
No 85
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=86.47 E-value=1.2 Score=48.32 Aligned_cols=48 Identities=25% Similarity=0.306 Sum_probs=31.3
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCC------------CcEEEEEeCCCCCCHHHHHH
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKD------------NGIITITDSGIGMTQQDLVD 183 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~------------~~~l~I~DnGiGMt~~el~~ 183 (753)
..++.||+||..|+.. .. ..|.|..... .-.|.|.|||.||+.+...+
T Consensus 240 ~vl~nLl~NA~~~~~~-------------~~--~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 299 (348)
T PRK11073 240 QVLLNIVRNALQALGP-------------EG--GTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDT 299 (348)
T ss_pred HHHHHHHHHHHHHhcc-------------CC--CeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhh
Confidence 3688899999998731 11 2343332110 12589999999999987765
No 86
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=86.32 E-value=2 Score=50.81 Aligned_cols=75 Identities=21% Similarity=0.405 Sum_probs=46.5
Q ss_pred ccEEEEEc--CCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeeccc----
Q 004444 154 LDIRIQTD--KDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVS---- 227 (753)
Q Consensus 154 ~~I~I~~d--~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~va---- 227 (753)
..|.|..+ .+.-++.+.|||+|++.+-+.+-|. |.+ .+. +.....| -|+|+.-|-.++
T Consensus 657 ~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~-iFq--------Rl~------s~~~y~g-tG~GL~I~kkI~e~H~ 720 (750)
T COG4251 657 PDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFV-IFQ--------RLH------SRDEYLG-TGLGLAICKKIAERHQ 720 (750)
T ss_pred CceEEeeeccCCceEEEecCCCCCcCHHHHHHHHH-HHH--------hcC------chhhhcC-CCccHHHHHHHHHHhC
Confidence 45666543 4456899999999999988877543 211 111 2234445 899998776654
Q ss_pred CEEEEEEecCCCCCcEEE
Q 004444 228 DRVVVETKSPKSDKQYVW 245 (753)
Q Consensus 228 dkV~V~Tk~~~~~~~~~w 245 (753)
-++.|.|+. +++.+|.+
T Consensus 721 G~i~vEs~~-gEgsTF~f 737 (750)
T COG4251 721 GRIWVESTP-GEGSTFYF 737 (750)
T ss_pred ceEEEeecC-CCceeEEE
Confidence 346666654 44444443
No 87
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=85.29 E-value=0.63 Score=51.62 Aligned_cols=46 Identities=17% Similarity=0.380 Sum_probs=36.8
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHH
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDL 181 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el 181 (753)
-.++|.|+||.-.. .+..+.|.+..+.+.-.|+|.|||.|.+.+..
T Consensus 282 rivQEaltN~~rHa---------------~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~ 327 (365)
T COG4585 282 RIVQEALTNAIRHA---------------QATEVRVTLERTDDELRLEVIDNGVGFDPDKE 327 (365)
T ss_pred HHHHHHHHHHHhcc---------------CCceEEEEEEEcCCEEEEEEEECCcCCCcccc
Confidence 48899999998775 34567788777777778999999999887654
No 88
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=84.33 E-value=1.2 Score=51.57 Aligned_cols=43 Identities=23% Similarity=0.513 Sum_probs=33.0
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQ 179 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~ 179 (753)
.+||-++||.-.- .+..+.|.+......-+++|+|||+|++..
T Consensus 485 IvREAlsNa~KHa---------------~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 485 IVREALSNAIKHA---------------QASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHhc---------------ccCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 6899999997664 244566777666666789999999998754
No 89
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=83.77 E-value=3.3 Score=46.26 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=73.2
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHH
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKA 199 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~ 199 (753)
...+-||..||..|.-+. ..... ..-+++.|.|..++++-.|.|+|-|=|.+..++.+.| .-..|.... .
T Consensus 262 ~ymlfElfKNamrATve~--h~~~~----~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf-~Y~ySTa~~---~ 331 (414)
T KOG0787|consen 262 YYMLFELFKNAMRATVEH--HGDDG----DELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLF-SYMYSTAPA---P 331 (414)
T ss_pred HHHHHHHHHHHHHHHHHH--hccCC----CCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHH-hhhcccCCC---C
Confidence 458899999999997542 11111 1134567777667778899999999999999988743 344443221 0
Q ss_pred hhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCccEEEEEecCC
Q 004444 200 MKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLTLYLKHD 279 (753)
Q Consensus 200 ~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT~I~L~Lk~~ 279 (753)
-.+. ....+.-.||-|+=-+=.+| +..+ |...+.. ..+.||.+.+|||..
T Consensus 332 ~~d~----~~~~plaGfG~GLPisrlYa-------~yf~-------------Gdl~L~S------leG~GTD~yI~Lk~l 381 (414)
T KOG0787|consen 332 SSDN----NRTAPLAGFGFGLPISRLYA-------RYFG-------------GDLKLQS------LEGIGTDVYIYLKAL 381 (414)
T ss_pred CCCC----CCcCcccccccCCcHHHHHH-------HHhC-------------CCeeEEe------eeccccceEEEeccC
Confidence 0000 11345666777763322221 1111 2233332 237999999999976
Q ss_pred CcC
Q 004444 280 DKG 282 (753)
Q Consensus 280 ~~~ 282 (753)
..+
T Consensus 382 s~~ 384 (414)
T KOG0787|consen 382 SME 384 (414)
T ss_pred Ccc
Confidence 544
No 90
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=76.66 E-value=5.2 Score=44.50 Aligned_cols=56 Identities=23% Similarity=0.369 Sum_probs=36.3
Q ss_pred ccEEEEEcCC--CcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccccchhhee
Q 004444 154 LDIRIQTDKD--NGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSA 223 (753)
Q Consensus 154 ~~I~I~~d~~--~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~ 223 (753)
.+|.|.+... .-.|.|.|+|+|+.++++.+-|-..-+-.+ +.....|.-|+|++-+
T Consensus 362 g~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdk--------------ARsR~~gGTGLGLaIa 419 (459)
T COG5002 362 GRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDK--------------ARSRKMGGTGLGLAIA 419 (459)
T ss_pred CeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhh--------------hhhhcCCCCchhHHHH
Confidence 3566655443 346899999999999999986643322111 2234568889998643
No 91
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=73.95 E-value=6.5 Score=48.06 Aligned_cols=53 Identities=19% Similarity=0.371 Sum_probs=39.4
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTI 188 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tI 188 (753)
.|-=||-||.-.. ++..+++|.+..+.++-.+.|.|||-|++.+++.+-|-..
T Consensus 779 VLiNLleNA~Kya--------------p~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F 831 (890)
T COG2205 779 VLINLLENALKYA--------------PPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKF 831 (890)
T ss_pred HHHHHHHHHHhhC--------------CCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhh
Confidence 3444777776543 2345577777788778889999999999999999866544
No 92
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=73.61 E-value=3.7 Score=47.74 Aligned_cols=42 Identities=26% Similarity=0.464 Sum_probs=25.7
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEc-CCCcEEEEEeCCCCCCH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTD-KDNGIITITDSGIGMTQ 178 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~ 178 (753)
.+.||+.||..+. ....+.|.+..+ ...-.|.|.|||+||+.
T Consensus 475 v~~nll~NA~k~~---------------~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 475 IIREATLNAIKHA---------------NASEIAVSCVTNPDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred HHHHHHHHHHhcC---------------CCCeEEEEEEEcCCCEEEEEEEECCcCcCC
Confidence 4677777766543 112244444443 23346899999999984
No 93
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=72.65 E-value=2.7 Score=51.11 Aligned_cols=94 Identities=23% Similarity=0.341 Sum_probs=55.7
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCcc--EEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLD--IRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKA 199 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~--I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~ 199 (753)
++-||+.||+|-+..+... + .+..-.+..+ |+...-..+. |.|+|.||..+-+...+... .|.+.+
T Consensus 150 a~aeLldnalDEi~~~~tf-~---~vd~I~p~~d~~i~a~~v~~~~---~s~~gg~~~~~~i~~~m~l~-~~~k~e---- 217 (775)
T KOG1845|consen 150 AIAELLDNALDEITNGATF-V---RVDYINPVMDIFIRALVVQLKR---ISDDGGGMKPEVIRKCMSLG-YSSKKE---- 217 (775)
T ss_pred hhhhhccccccccccccce-E---EeeeecccccccceeEEeeccc---eeccccccCHHHHHHHHHhh-hhhhhh----
Confidence 7899999999988643211 0 0000011111 1111101111 67899999998888766543 333221
Q ss_pred hhccccCCCCCCccccccchhhee-ecccCEEEEEEec
Q 004444 200 MKDSKDAGGDSNLIGQFGVGFYSA-FLVSDRVVVETKS 236 (753)
Q Consensus 200 ~~~~~~~~~~~~~IGqFGIGf~S~-F~vadkV~V~Tk~ 236 (753)
...-+||+|.||.+. .-++-.+.|.++.
T Consensus 218 ---------~~~tv~q~~~gfktst~rlGa~~i~~~R~ 246 (775)
T KOG1845|consen 218 ---------ANSTVGQYGNGFKTSTMRLGADAIVFSRC 246 (775)
T ss_pred ---------hhhhhhhhccccccchhhhccceeEeehh
Confidence 135689999999964 5678888888883
No 94
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=70.77 E-value=8.9 Score=44.00 Aligned_cols=47 Identities=28% Similarity=0.213 Sum_probs=33.4
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcC---CCcEEEEEeCCCCCCHHHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDK---DNGIITITDSGIGMTQQDLVD 183 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DnGiGMt~~el~~ 183 (753)
.+--|+-||+|||. ...+.|.+..+. +.-.|.|.|||-|...+-+.+
T Consensus 568 VlvNl~~NaldA~~---------------h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dk 617 (673)
T COG4192 568 VLVNLIVNALDAST---------------HFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDK 617 (673)
T ss_pred HHHHHHHHHHhhhc---------------cCCceEEEEeecCcccceEEEEecCCCCCchhHHHH
Confidence 34458999999995 122567766554 345799999999998865554
No 95
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=66.47 E-value=8.8 Score=44.23 Aligned_cols=56 Identities=25% Similarity=0.301 Sum_probs=39.8
Q ss_pred CCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcC--CCcEEEEEeCCCCCCHHHHHH
Q 004444 116 YSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDK--DNGIITITDSGIGMTQQDLVD 183 (753)
Q Consensus 116 Ys~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~l~I~DnGiGMt~~el~~ 183 (753)
+-+|-..|-=||-||.-|+-+. ..+...|.|..-. ..-.+.|.|||.||++.-...
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~------------~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~ 405 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEP------------KRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEG 405 (456)
T ss_pred ccCchHHHhHHHHHHHHHhccc------------CCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHH
Confidence 5578888888999999998432 1233456665432 334679999999999987765
No 96
>PRK13559 hypothetical protein; Provisional
Probab=63.09 E-value=7.8 Score=42.30 Aligned_cols=44 Identities=23% Similarity=0.106 Sum_probs=26.4
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEE--cCC--CcEEEEEeCCCCCCH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQT--DKD--NGIITITDSGIGMTQ 178 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~--~~~l~I~DnGiGMt~ 178 (753)
.+.|||.||+.+.. .+ .....|.|.. ... .-.|.+.|||.||..
T Consensus 271 vl~nLi~NA~k~~~------~~-------~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~ 318 (361)
T PRK13559 271 VLHELAVNAIKHGA------LS-------ADQGRISISWKPSPEGAGFRIDWQEQGGPTPP 318 (361)
T ss_pred HHHHHHHhHHHhcc------cc-------CCCcEEEEEEEecCCCCeEEEEEECCCCCCCC
Confidence 67788888876631 11 1123455554 322 346788999998543
No 97
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=51.54 E-value=24 Score=43.24 Aligned_cols=125 Identities=22% Similarity=0.278 Sum_probs=67.8
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHH--------HHhHhhhcch
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD--------CLGTIAQSGT 193 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~--------~l~tIa~Sg~ 193 (753)
..-|.+-||.| - .| +...-.|.+.++++.+.|.|.+||-|+.-+.... .||..-.|+.
T Consensus 57 i~dEilvNaad-k--~r-----------d~~m~~i~v~i~~e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Lltssn 122 (842)
T KOG0355|consen 57 IFDEILVNAAD-K--QR-----------DPKMNTIKVTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSSN 122 (842)
T ss_pred HHHHHhhcccc-c--cc-----------CCCcceeEEEEccCCCEEEEEeCCCcceeeecccccccchHHHHhhhhhccc
Confidence 45688999999 3 21 2233478888999999999999999997654221 1233333332
Q ss_pred hhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEE--ecCCCCCcEEEEeeCCC-CceEEEecCCCCCCCCCcc
Q 004444 194 AKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVET--KSPKSDKQYVWEGEANA-SSYTIREETNPEKLLPRGT 270 (753)
Q Consensus 194 ~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~T--k~~~~~~~~~w~s~~~~-~~y~i~~~~~~~~~~~~GT 270 (753)
+... ...-.-|+-|.|-.=|=.++-+.+|.| +..+......|...-.. ..=.+....+ +.+|
T Consensus 123 ------y~d~----ekK~tggrngygakLcniFs~~f~~Et~d~~~~~~~kQ~w~~nm~~~~~~~i~~~~~-----~~yT 187 (842)
T KOG0355|consen 123 ------YDDD----EKKVTGGRNGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVPSTD-----EDYT 187 (842)
T ss_pred ------cCCC----ccccccCCCccceeeeeeccccceeeeeehHhHHHHHHhhhcCCcccCCceeecCCC-----CCcc
Confidence 1100 111234555555555545555555554 33222335567654321 1122333332 3499
Q ss_pred EEEEE
Q 004444 271 RLTLY 275 (753)
Q Consensus 271 ~I~L~ 275 (753)
+|++.
T Consensus 188 kitF~ 192 (842)
T KOG0355|consen 188 KITFS 192 (842)
T ss_pred eEEeC
Confidence 99876
No 98
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=47.14 E-value=21 Score=39.49 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=39.9
Q ss_pred cCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHH
Q 004444 114 SLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD 183 (753)
Q Consensus 114 ~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~ 183 (753)
.|-+...+++.-.+|-|.-.+++- ..++.+.|.+.-+.+.-+++|+|||.|++..+..+
T Consensus 351 ~l~~e~~talyRv~QEaltNIErH-----------a~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~~ 409 (459)
T COG4564 351 KLKPEVATALYRVVQEALTNIERH-----------AGATRVTILLQQMGDMVQLMVRDNGVGFSVKEALQ 409 (459)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhh-----------cCCeEEEEEeccCCcceEEEEecCCCCccchhhcc
Confidence 355566778888899888888642 12333344444444566899999999998877643
No 99
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=46.81 E-value=22 Score=39.92 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=21.9
Q ss_pred CCCCccEEEEEcCCCcEEEEEeCCCCCCH
Q 004444 150 DAVDLDIRIQTDKDNGIITITDSGIGMTQ 178 (753)
Q Consensus 150 ~~~~~~I~I~~d~~~~~l~I~DnGiGMt~ 178 (753)
++..+.|.+..+.+.-.+.|+|||+|+..
T Consensus 427 ~AS~V~i~l~~~~e~l~Lei~DdG~Gl~~ 455 (497)
T COG3851 427 DASAVTIQLWQQDERLMLEIEDDGSGLPP 455 (497)
T ss_pred ccceEEEEEeeCCcEEEEEEecCCcCCCC
Confidence 34566777777766678999999999753
No 100
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=41.17 E-value=30 Score=33.91 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=27.6
Q ss_pred EEECCCChHHHHHHhhhcCCCCchh---------HHHHHHHHHHHHH
Q 004444 699 FEINPEHPIIQNLNAASKNCPDDND---------ALRVVDLLYDAAL 736 (753)
Q Consensus 699 LEINp~HpLIk~L~~~~~~~~~d~~---------~~~l~~~Lyd~Al 736 (753)
=+.+|+||||++|..+...|-.++. +=.+|...||.=+
T Consensus 16 E~d~p~~plv~~~~~L~q~Nms~~~y~~a~r~YLVFL~Aq~~Yd~yv 62 (147)
T PF06112_consen 16 EADYPNHPLVAKLQALPQNNMSDAEYREAQRNYLVFLIAQHCYDQYV 62 (147)
T ss_pred cccCCCCHHHHHHHhhccCCCCHHHHHHhhhchhhhhhHHHHHHHHH
Confidence 3689999999999999877654432 2356777787644
No 101
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=37.85 E-value=27 Score=42.87 Aligned_cols=51 Identities=24% Similarity=0.464 Sum_probs=34.9
Q ss_pred EEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccccchhhee-ecccCEEEEEEec
Q 004444 167 ITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSA-FLVSDRVVVETKS 236 (753)
Q Consensus 167 l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~-F~vadkV~V~Tk~ 236 (753)
++..|+|.||+.+++...+- | . .....||++|=|+.|. +-.+..+.+.|+.
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~---------f------~----~~~~~ig~ygnG~ksgs~r~gkd~~~~tk~ 53 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAIN---------F------A----VGLYGIGDYGNGLKSGSMRIGKDFILFTKK 53 (775)
T ss_pred cccccCCCCcCchhhhhhhh---------h------c----ccccccccccCcccccccccCcccceeecc
Confidence 56789999999999876331 1 0 2345678888887764 5566566666665
No 102
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=37.30 E-value=40 Score=39.24 Aligned_cols=87 Identities=30% Similarity=0.366 Sum_probs=52.9
Q ss_pred CCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCC---CCCCHHHHHHHHhHhhhc
Q 004444 115 LYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSG---IGMTQQDLVDCLGTIAQS 191 (753)
Q Consensus 115 LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG---iGMt~~el~~~l~tIa~S 191 (753)
.+.-|..+|||+|.||+=.-+ | +.. ...+.|.|.- ..|.|+-.| .||+.+++.++ +|
T Consensus 267 v~dyP~~alREai~NAv~HRD---Y---s~~-----~~~v~I~iyd----DRieI~NPGgl~~gi~~~~l~~~-----~s 326 (467)
T COG2865 267 VWDYPLEALREAIINAVIHRD---Y---SIR-----GRNVHIEIYD----DRIEITNPGGLPPGITPEDLLKG-----RS 326 (467)
T ss_pred cccCCHHHHHHHHHHHHHhhc---c---ccC-----CCceEEEEEC----CeEEEECCCCCCCCCChhHcccC-----CC
Confidence 344578899999999984432 2 211 1234444432 379999877 58999998773 33
Q ss_pred chhh-HHHHhhccccCCCCCCccccccchhheeeccc
Q 004444 192 GTAK-FLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVS 227 (753)
Q Consensus 192 g~~~-f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~va 227 (753)
-.+. .+..+= .+.++|=+.|.|+-=.|-.+
T Consensus 327 ~~RNp~LA~~l------~~~~liE~~GSGi~rm~~~~ 357 (467)
T COG2865 327 KSRNPVLAKVL------RDMGLIEERGSGIRRMFDLM 357 (467)
T ss_pred cccCHHHHHHH------HHhhhHHHhCccHHHHHHHH
Confidence 3221 121111 24578899999986665543
No 103
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=36.24 E-value=99 Score=27.23 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=42.5
Q ss_pred CCceEEEEecCCH-HHHhcChhHHHhhhcCceEEEecCCCcHHHHHHhhhcCCcceEeccc
Q 004444 554 EQKDIYFIAADSV-ASARNTPFLEKLLEKDLEVLYLVDPIDEIAVQNLKSYKEKNFVDISK 613 (753)
Q Consensus 554 ~Qk~IYY~~~~~~-~~~~~sp~~E~~~~kg~eVL~l~dpiDE~~l~~L~~y~~~~f~~V~~ 613 (753)
+.+.+|.+.|+++ +.+..+|+.-. .|..|||..+.+++.+...|...+..++.-|..
T Consensus 24 ~~~~v~ia~g~~~~Dalsa~~~a~~---~~~PIll~~~~l~~~~~~~l~~~~~~~v~iiGg 81 (92)
T PF04122_consen 24 KSDKVYIASGDNFADALSASPLAAK---NNAPILLVNNSLPSSVKAFLKSLNIKKVYIIGG 81 (92)
T ss_pred CCCEEEEEeCcchhhhhhhHHHHHh---cCCeEEEECCCCCHHHHHHHHHcCCCEEEEECC
Confidence 5668898998775 44455555533 688999999999999999998887677765543
No 104
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=31.92 E-value=2e+02 Score=31.29 Aligned_cols=26 Identities=35% Similarity=0.583 Sum_probs=14.0
Q ss_pred eEEEecCC-----CcHHHHHHhhhcCCcceE
Q 004444 584 EVLYLVDP-----IDEIAVQNLKSYKEKNFV 609 (753)
Q Consensus 584 eVL~l~dp-----iDE~~l~~L~~y~~~~f~ 609 (753)
.|+|++|. +|.+++..+.++...-..
T Consensus 153 ~VlYl~DNaGEi~FD~vlie~ik~~~~~vv~ 183 (285)
T COG1578 153 SVLYLTDNAGEIVFDKVLIEVIKELGKKVVV 183 (285)
T ss_pred cEEEEecCCccHHHHHHHHHHHHhcCCceEE
Confidence 55555553 466666666666554333
No 105
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.53 E-value=85 Score=31.38 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=30.1
Q ss_pred hHHHhhhcCceEEEecCCCcHHHHHHhh-hcC---CcceEe
Q 004444 574 FLEKLLEKDLEVLYLVDPIDEIAVQNLK-SYK---EKNFVD 610 (753)
Q Consensus 574 ~~E~~~~kg~eVL~l~dpiDE~~l~~L~-~y~---~~~f~~ 610 (753)
+.+.|+++|+++++|..--|.|+++.+. .+. .++|..
T Consensus 70 ~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~~~~V~f~a 110 (171)
T KOG0541|consen 70 KADELKSKGVDEIICVSVNDPFVMKAWAKSLGANDHVKFVA 110 (171)
T ss_pred HHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCccceEEEEe
Confidence 4569999999999999999999999995 443 356653
Done!