Query 004444
Match_columns 753
No_of_seqs 258 out of 1724
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 01:25:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cg9_A ATP-dependent molecular 100.0 4E-164 1E-168 1417.1 47.8 647 95-753 3-668 (677)
2 2o1u_A Endoplasmin; GRP94, HSP 100.0 8E-151 3E-155 1305.5 56.4 622 94-753 21-651 (666)
3 2ioq_A Chaperone protein HTPG; 100.0 4E-147 1E-151 1271.6 45.4 608 95-753 4-618 (624)
4 1y4s_A Chaperone protein HTPG; 100.0 2E-134 7E-139 1152.9 35.2 548 95-683 4-558 (559)
5 3hjc_A Heat shock protein 83-1 100.0 1E-116 4E-121 976.3 36.5 401 349-753 12-414 (444)
6 3q6m_A Heat shock protein HSP 100.0 6E-116 2E-120 966.1 35.2 395 355-753 2-398 (448)
7 2cge_A ATP-dependent molecular 100.0 4E-113 1E-117 944.6 39.3 393 356-753 1-396 (405)
8 1hk7_A Heat shock protein HSP8 100.0 2.6E-89 9.1E-94 717.1 25.0 286 356-646 1-288 (288)
9 2gq0_A Chaperone protein HTPG; 100.0 9.2E-89 3.2E-93 717.5 22.2 290 356-667 2-295 (303)
10 3pry_A Heat shock protein HSP 100.0 6.9E-86 2.4E-90 685.9 24.0 263 354-620 1-263 (268)
11 1usu_A Heat shock protein HSP8 100.0 1.2E-85 4.3E-90 682.1 23.7 257 354-614 1-257 (260)
12 1y6z_A Heat shock protein, put 100.0 2.1E-83 7.2E-88 669.2 18.6 260 354-615 1-263 (263)
13 3peh_A Endoplasmin homolog; st 100.0 2.6E-60 8.9E-65 498.6 21.1 258 91-354 19-281 (281)
14 3ied_A Heat shock protein; HSP 100.0 2.7E-56 9.4E-61 459.0 17.4 207 94-308 23-271 (272)
15 3nmq_A Heat shock protein HSP 100.0 7.4E-55 2.5E-59 449.0 22.0 210 94-311 15-224 (239)
16 1qy5_A Endoplasmin; GRP94, NEC 100.0 1.6E-54 5.3E-59 455.6 18.3 257 94-354 4-269 (269)
17 3o0i_A HSP90AA1 protein; HSP90 100.0 6.2E-50 2.1E-54 416.2 21.7 219 93-319 35-253 (256)
18 3t0h_A Heat shock protein HSP 100.0 1.1E-48 3.8E-53 402.3 21.0 218 93-318 7-224 (228)
19 2gqp_A Endoplasmin; GRP94, HSP 100.0 5.9E-48 2E-52 399.6 17.1 213 94-310 8-221 (236)
20 2wer_A ATP-dependent molecular 100.0 1.2E-44 4.1E-49 371.2 21.6 211 95-312 3-213 (220)
21 1yc1_A HSP 86, heat shock prot 100.0 8.2E-45 2.8E-49 381.2 20.8 214 94-315 44-257 (264)
22 2ior_A Chaperone protein HTPG; 100.0 1.1E-40 3.9E-45 344.9 17.5 208 94-308 23-232 (235)
23 1sf8_A Chaperone protein HTPG; 100.0 1.6E-30 5.5E-35 243.4 10.7 110 634-753 11-120 (126)
24 1b63_A MUTL; DNA mismatch repa 99.7 1.1E-17 3.6E-22 181.4 11.7 154 113-299 19-183 (333)
25 1h7s_A PMS1 protein homolog 2; 99.5 3E-14 1E-18 156.0 12.8 166 104-301 15-196 (365)
26 3h4l_A DNA mismatch repair pro 99.4 1.6E-13 5.4E-18 150.2 5.7 151 113-299 20-184 (367)
27 3na3_A DNA mismatch repair pro 99.4 1.8E-12 6E-17 140.9 13.5 156 107-299 16-187 (348)
28 1mu5_A Type II DNA topoisomera 98.8 2.2E-09 7.4E-14 121.3 6.9 148 120-297 34-196 (471)
29 3fv5_A DNA topoisomerase 4 sub 98.8 1.1E-08 3.6E-13 103.3 11.2 160 119-308 18-190 (201)
30 2zbk_B Type 2 DNA topoisomeras 98.8 7.4E-09 2.5E-13 118.4 7.8 157 121-307 34-206 (530)
31 1kij_A DNA gyrase subunit B; t 98.7 2.7E-08 9.2E-13 109.9 9.7 162 120-308 34-205 (390)
32 2q2e_B Type 2 DNA topoisomeras 98.5 4.4E-08 1.5E-12 113.7 6.0 156 120-307 39-211 (621)
33 1s16_A Topoisomerase IV subuni 98.5 3.9E-07 1.3E-11 100.6 11.5 159 120-308 33-204 (390)
34 3cwv_A DNA gyrase, B subunit, 98.4 4.2E-06 1.4E-10 91.7 17.6 152 120-308 32-194 (369)
35 4duh_A DNA gyrase subunit B; s 98.4 6E-07 2E-11 91.7 8.8 156 120-309 37-208 (220)
36 1ei1_A DNA gyrase B, GYRB; ATP 98.4 1E-06 3.5E-11 97.2 10.5 158 119-308 35-206 (391)
37 4emv_A DNA topoisomerase IV, B 98.3 4E-06 1.4E-10 85.8 13.0 159 120-309 42-214 (226)
38 1zxm_A TOPO IIA ATPase, DNA to 98.3 1.7E-06 5.8E-11 95.7 10.5 161 121-307 55-230 (400)
39 3lnu_A Topoisomerase IV subuni 98.0 1.6E-05 5.3E-10 88.0 10.4 165 114-308 43-223 (408)
40 3ttz_A DNA gyrase subunit B; p 97.6 0.00015 5E-09 72.8 9.5 141 120-309 33-181 (198)
41 1pvg_A DNA topoisomerase II; G 97.5 0.00059 2E-08 75.8 13.7 129 122-278 68-208 (418)
42 1th8_A Anti-sigma F factor; SP 97.1 0.00059 2E-08 63.4 6.2 85 120-235 41-125 (145)
43 3jz3_A Sensor protein QSEC; he 97.0 0.00023 7.8E-09 69.9 2.9 46 122-185 121-166 (222)
44 4ew8_A Sensor protein DIVL; si 97.0 0.00047 1.6E-08 70.1 5.3 49 121-183 158-206 (268)
45 2btz_A Pyruvate dehydrogenase 97.0 0.001 3.5E-08 72.8 7.9 115 122-278 235-349 (394)
46 2e0a_A Pyruvate dehydrogenase 96.9 0.00084 2.9E-08 73.5 6.5 116 122-278 234-349 (394)
47 3d36_A Sporulation kinase B; G 96.9 0.00082 2.8E-08 66.9 5.5 48 122-183 127-174 (244)
48 3sl2_A Sensor histidine kinase 96.9 0.00029 1E-08 67.5 2.0 77 122-226 47-125 (177)
49 1y8o_A [pyruvate dehydrogenase 96.9 0.0012 4.2E-08 72.9 7.2 117 122-278 257-373 (419)
50 1gkz_A [3-methyl-2-oxobutanoat 96.8 0.00049 1.7E-08 75.0 3.1 57 121-183 241-297 (388)
51 1ysr_A Sensor-type histidine k 96.6 0.0023 7.8E-08 59.3 5.9 49 122-185 50-98 (150)
52 4gfh_A DNA topoisomerase 2; to 96.6 0.0074 2.5E-07 74.8 11.6 147 122-295 63-222 (1177)
53 2q8g_A [pyruvate dehydrogenase 96.5 0.0021 7.2E-08 70.6 5.5 116 122-278 247-362 (407)
54 1id0_A PHOQ histidine kinase; 96.5 0.0048 1.6E-07 57.0 7.0 46 122-183 48-93 (152)
55 1i58_A Chemotaxis protein CHEA 96.4 0.0026 8.8E-08 61.5 5.0 56 122-183 51-110 (189)
56 3a0y_A Sensor protein; ATP-LID 96.2 0.0022 7.7E-08 59.0 2.9 48 122-183 51-98 (152)
57 2c2a_A Sensor histidine kinase 95.9 0.0029 1E-07 64.1 2.7 50 122-184 142-193 (258)
58 1bxd_A ENVZ(290-450), protein 95.8 0.0065 2.2E-07 56.9 4.3 46 122-183 51-96 (161)
59 3ehg_A Sensor kinase (YOCF pro 95.6 0.01 3.5E-07 53.8 4.8 45 122-181 44-88 (128)
60 1b3q_A Protein (chemotaxis pro 95.4 0.019 6.6E-07 62.5 7.1 54 122-183 110-169 (379)
61 3ehh_A Sensor kinase (YOCF pro 95.4 0.013 4.4E-07 57.5 4.9 45 122-181 134-178 (218)
62 3zxq_A Hypoxia sensor histidin 95.2 0.0092 3.2E-07 53.3 3.0 43 122-180 43-85 (124)
63 1r62_A Nitrogen regulation pro 94.9 0.013 4.4E-07 54.2 3.2 50 122-184 52-111 (160)
64 3zxo_A Redox sensor histidine 94.7 0.0086 3E-07 53.8 1.4 43 122-180 47-89 (129)
65 3a0r_A Sensor protein; four he 93.5 0.036 1.2E-06 58.0 3.3 48 122-183 248-295 (349)
66 4fpp_A Phosphotransferase; fou 85.2 0.69 2.4E-05 46.7 4.6 47 123-183 151-199 (247)
67 3ke6_A Protein RV1364C/MT1410; 66.7 5.2 0.00018 43.5 5.2 74 120-235 299-373 (399)
68 1ixm_A SPO0B, protein (sporula 63.9 6.5 0.00022 38.7 4.7 53 124-184 111-165 (192)
No 1
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-164 Score=1417.10 Aligned_cols=647 Identities=44% Similarity=0.774 Sum_probs=560.7
Q ss_pred CcccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCC
Q 004444 95 LEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGI 174 (753)
Q Consensus 95 ~e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 174 (753)
.|+|.||+|+++||+||+++||||+++|||||||||+||++++|++++++++......++.|+|.+++++++|+|+|||+
T Consensus 3 ~e~~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 82 (677)
T 2cg9_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (677)
T ss_dssp CEEEECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred ccceehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999988877888999999998889999999999
Q ss_pred CCCHHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCce
Q 004444 175 GMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSY 254 (753)
Q Consensus 175 GMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y 254 (753)
|||++||.++|++||+||++.|+++++.+ .+...||||||||||+||||++|+|+|++.+ +.++.|+++++ +.|
T Consensus 83 GMt~edl~~~l~tIA~Sgt~~f~~kl~~~----~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~-~~~~~W~s~g~-~~~ 156 (677)
T 2cg9_A 83 GMTKAELINNLGTIAKSGTKAFMEALSAG----ADVSMIGQFGVGFYSLFLVADRVQVISKSND-DEQYIWESNAG-GSF 156 (677)
T ss_dssp CCCHHHHHGGGSSSSSCTTHHHHSCCCSS----CCCCCCCCTTCTTGGGGGTEEEEEEEEECTT-SCEEEEEECSS-SEE
T ss_pred CCCHHHHHHHHHhHhccccHHHHHhhhcc----cchhhcCCCCchhHHHhhcCcEEEEEEccCC-CceEEEEEcCC-ceE
Confidence 99999999999999999999999887643 4678999999999999999999999999964 56999999998 999
Q ss_pred EEEecCCCCCCCCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEeccccccccccCCCCcc---------cc
Q 004444 255 TIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPA---------ET 325 (753)
Q Consensus 255 ~i~~~~~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~~~~~~~~~~~~~~~~---------~~ 325 (753)
+|.+++.+ ...++||+|+|||++++.+|++.++|+++|++||+||+|||+++.+++.+++++++++++ ++
T Consensus 157 ti~~~~~~-~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~e~~~~~~~~~~e~~~ 235 (677)
T 2cg9_A 157 TVTLDEVN-ERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKK 235 (677)
T ss_dssp EEEECCSS-CCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEECCCCCCCCC-------------------
T ss_pred EEeecCCC-CCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEEeeccccccCcCcchhhhccccccccccc
Confidence 99985322 245899999999999999999999999999999999999999986554434432221100 00
Q ss_pred cccchh------hH-HHhhhcccceeeeeccccccccCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCceeeeeecccce
Q 004444 326 NKDKQD------ET-AEKKKKTKTVVERYWDWELTNETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEV 398 (753)
Q Consensus 326 ~~~~~~------~~-~~~~~~~~~~~~~~~~~e~iN~~~piW~r~~~~v~~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~ 398 (753)
+.++++ ++ ++++++++++++.+++|++||+++|||+|+|++||+|||.+|||+++++|++||+|+||++||++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~e~e~iN~~~plW~r~~~eit~eeY~~FYk~l~~d~~~pl~~~H~~veg~~ 315 (677)
T 2cg9_A 236 DEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQL 315 (677)
T ss_dssp --------------------------CCCCCBCCCCCCCCTTSSCGGGCCTTTHHHHHHHHTTCCSCCSEEEEEEECSSS
T ss_pred cccccccccccccchhhhcccccccccccccceecccCCCCcccCcccCCHHHHHHHHHHhcCCCCCchheEEecccccc
Confidence 000000 00 01234456667778899999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEeeCCCCCCCccccCCCCcCeEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHH
Q 004444 399 EFRSILYVPAVAPMGKDDLINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMR 478 (753)
Q Consensus 399 ~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rVfI~d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~ 478 (753)
+|+||||||+++||++|++. ..+++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++|+
T Consensus 316 ~~~~lLyiP~~ap~d~~~~~-~~~~~ikLYv~rVfI~d~~~-~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~ 393 (677)
T 2cg9_A 316 EFRAILFIPKRAPFDLFESK-KKKNNIKLYVRRVFITDEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIR 393 (677)
T ss_dssp CEEEEEEECSSCCC----------CCSEEEETTEEEEECST-TTSCGGGTTCEEEEEESSCCCCBTTTBCCCHHHHHHHH
T ss_pred eEEEEEEEcCCCchhhhhhh-hccCCeEEEEeeeEeecChh-hhchHHHHHheeecccCCCCcccCHHHhccCHHHHHHH
Confidence 99999999999999999742 45799999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCChHHHHHHHHHHhHHhhhcccCCccChhhccCccceeeccCCCcccCHHHHHhhcCCCCceE
Q 004444 479 KRLVRKAFDMILGISMSENRADYEKFWENFGKYLKMGCIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDI 558 (753)
Q Consensus 479 ~~l~~kv~~~L~~la~~~d~e~y~~f~~~fg~~lK~G~~eD~~~~e~l~~LLrF~Ss~~~~~~~SL~eYv~rmk~~Qk~I 558 (753)
+.|++|++++|.+||+ ++++|++||++||.+||+|+++|..||++|++||||+||++.++++||+||++|||++|+.|
T Consensus 394 ~~l~kkvl~~l~~la~--~~e~y~~f~~~fg~~lK~G~~eD~~nr~~l~~llrf~ss~~~~~~~sL~eYv~rmke~Q~~I 471 (677)
T 2cg9_A 394 KNIVKKLIEAFNEIAE--DSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNI 471 (677)
T ss_dssp HHHHHHHHHHHHHHHS--CSHHHHHHHHHHHHHHHHHHHHCSSSHHHHHTTCCBEESSCTTSCBCSTTHHHHSCTTCCEE
T ss_pred HHHHHHHHHHHHHHHh--CHHHHHHHHHHHhHHhhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhccccCceE
Confidence 9999999999999995 68999999999999999999999999999999999999987778999999999999999999
Q ss_pred EEEecCCHHHHhcChhHHHhhhcCceEEEecCCCcHHHHHHhhhcCCcceEeccccccCcCCCchHHH--HhhHHHHHHH
Q 004444 559 YFIAADSVASARNTPFLEKLLEKDLEVLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGEKNEEKE--KVMKEEFGQT 636 (753)
Q Consensus 559 YY~~~~~~~~~~~sp~~E~~~~kg~eVL~l~dpiDE~~l~~L~~y~~~~f~~V~~~~l~l~~~~e~~~--~~~~~e~~~L 636 (753)
||++|+|++++++|||+|.|+++|||||||++||||+|+++|.+|+|++|++|+++ ++|++.+++++ ++.++++++|
T Consensus 472 yY~t~~s~~~~~~sp~~E~~~~kg~EVl~l~~~iDe~~~~~l~e~~gk~~~~v~k~-l~l~~~e~~~~~~~~~~~~~~~L 550 (677)
T 2cg9_A 472 YYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPL 550 (677)
T ss_dssp EEEECSCSTTTTTCGGGHHHHTTTCCEEEECSHHHHHHHGGGSCBTTBEEECSCCC-CCSCSSTTSSTTHHHHHGGGHHH
T ss_pred EEEeCCCHHHHHhCcHHHHHHhCCceEEEeCCchHHHHHHHHHHhCCceEEEeecc-cccccchhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 98876543332 4456789999
Q ss_pred HHHHHHHhCCceeEEEEeecCCCCCeEEEecCCCchHHHHHHHHHhccCCCCccccccCceeEEECCCChHHHHHHhhhc
Q 004444 637 CDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASK 716 (753)
Q Consensus 637 ~~~lk~~L~~kV~~V~vS~rL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLIk~L~~~~~ 716 (753)
|+|||++|+++|.+|++|+||++||||||++++|||++|+|||++|+++++.+.++|..+++|||||+||||++|..+..
T Consensus 551 ~~~~k~~L~~~v~~V~~s~rl~~sP~~lv~~~~~~s~~merimka~~~~d~~~~~~~~~k~~LeiNp~hpli~~L~~~~~ 630 (677)
T 2cg9_A 551 TKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVD 630 (677)
T ss_dssp HHHHHHTTCSSCSCEECCSSCSSSCEEEECCTTSCCHHHHHHHTTCC-------------CEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCcceEEEEeccCCCCCEEEEeCcccccHHHHHHHHHhhccccccccccccCceEEEcCCCHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999998766655567778999999999999999998765
Q ss_pred CC-CCchhHHHHHHHHHHHHHHhCCCCCccHHHHHhhC
Q 004444 717 NC-PDDNDALRVVDLLYDAALVSSGFTVKSGRAWQQDI 753 (753)
Q Consensus 717 ~~-~~d~~~~~l~~~Lyd~AlL~~G~~~edp~~fa~ri 753 (753)
.+ ++++.++++|++|||+|+|++|+.++||+.|++||
T Consensus 631 ~d~~~~~~~~~~~~~Lyd~All~~G~~l~dp~~f~~ri 668 (677)
T 2cg9_A 631 EGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRI 668 (677)
T ss_dssp TCCSSCSSSSTTHHHHHHHHHHHTTCCCSSTTHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHH
Confidence 54 45677999999999999999999999999999985
No 2
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=7.8e-151 Score=1305.55 Aligned_cols=622 Identities=46% Similarity=0.846 Sum_probs=528.1
Q ss_pred CCcccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCC
Q 004444 94 PLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSG 173 (753)
Q Consensus 94 ~~e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 173 (753)
..|++.||+|+++|++||+++||||+++|||||||||+||++|+|++++++++.++...++.|+|.+|+++++|+|+|||
T Consensus 21 ~~e~~~Fqaei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnG 100 (666)
T 2o1u_A 21 MSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTG 100 (666)
T ss_dssp -------------CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECS
T ss_pred cccceehHHhHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECC
Confidence 35899999999999999999999999999999999999999999999999998877788899999999989999999999
Q ss_pred CCCCHHHHHHHHhHhhhcchhhHHHHhhccccCC-CCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCC
Q 004444 174 IGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAG-GDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANAS 252 (753)
Q Consensus 174 iGMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~-~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~ 252 (753)
+|||++||.++|++||.||++.|+++++++.+.+ .+...||||||||||+||||++|+|+|++.+ +.++.|++++ |
T Consensus 101 iGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~-~~~~~W~s~g--g 177 (666)
T 2o1u_A 101 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNN-DTQHIWESDS--N 177 (666)
T ss_dssp CCCCHHHHHHHTTC-------------------------------CTTGGGGGTEEEEEEEEECTT-SCCEEEEESS--S
T ss_pred CCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCC-CceEEEEEeC--C
Confidence 9999999999999999999999998887420000 3567999999999999999999999999964 5689999987 6
Q ss_pred ceEEEecCCCCCCCCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEeccccccccccCCCCcccccccchhh
Q 004444 253 SYTIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAETNKDKQDE 332 (753)
Q Consensus 253 ~y~i~~~~~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (753)
.|+|.+...+ ...++||+|+|+|++++.+|++.++|+++|++||+||++||+++++++. ++
T Consensus 178 ~~ti~~~~~~-~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~~~~~~~~----~~-------------- 238 (666)
T 2o1u_A 178 EFSVIADPRG-NTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTG----GG-------------- 238 (666)
T ss_dssp CCEEEECTTC-CSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEEEEECC----------------------
T ss_pred eEEEEecccC-CCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceEEeccccc----cc--------------
Confidence 8999886532 2358999999999999999999999999999999999999999865311 00
Q ss_pred HHHhhhcccceeeeeccccccccCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCceeeeeecccceeeEEEEEeeCCCCC
Q 004444 333 TAEKKKKTKTVVERYWDWELTNETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPAVAPM 412 (753)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~e~iN~~~piW~r~~~~v~~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~ 412 (753)
++.+.+|+.+|+.+|+|+++++++++|+|.+||++++++|.+||+|+|+++||+++|+|+||+|+.+||
T Consensus 239 -----------~~~~~~~~~iN~~~~lw~~~~~~i~~eey~~fy~~~~~d~~~pl~~ih~~~eg~~~~~gll~iP~~~p~ 307 (666)
T 2o1u_A 239 -----------GKTVWDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPR 307 (666)
T ss_dssp --------------CCEEEECSCCSCTTTSCTTTCCHHHHHHHHHHTTCTTSCCSEEEEEEECSSSCEEEEEEECSSCCC
T ss_pred -----------cccccceEEEecCccccccCcccccHHHHHHHHhhhccccccCeeEEEecccCcEEEEEEEEcCCCCch
Confidence 012357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccC-CCCcCeEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHh
Q 004444 413 GKDDLIN-PKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILG 491 (753)
Q Consensus 413 ~~~~~~~-~~~~~i~LYv~rVfI~d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~l~~kv~~~L~~ 491 (753)
++|.... ..+++|+||||||||+|+|+ +|||+||+||+|||||+|||||||||+||+|+++++|++.|++||+++|.+
T Consensus 308 d~~~~~~~~~~~~i~LYVn~vfI~d~~~-~llP~~l~FvkGvVDs~dLplNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~~ 386 (666)
T 2o1u_A 308 GLFDEYGSKKSDYIKLYVRRVFITDDFH-DMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKK 386 (666)
T ss_dssp ------------CEEEEETTEEEESCCC-TTSCGGGTTCEEEEEESSSCSSSCHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccccCCeEEEEcCeEeeCchh-hhhHHHHHHeeeeeCHhhCCCcccchhhccCHHHHHHHHHHHHHHHHHHHH
Confidence 9886421 24689999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChHHHH-HHHHHHhHHhhhcccCCccChhhccCccceeeccCCCcccCHHHHHhhcCCCCceEEEEecCCHHHHh
Q 004444 492 ISMSENRADYE-KFWENFGKYLKMGCIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAADSVASAR 570 (753)
Q Consensus 492 la~~~d~e~y~-~f~~~fg~~lK~G~~eD~~~~e~l~~LLrF~Ss~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~~~~~~~ 570 (753)
+++ ++|+ +||++||++||+|+++|..|+++|++||||+||+++++++||+||++|||++|+.|||++|+|+++++
T Consensus 387 l~~----e~y~~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~ 462 (666)
T 2o1u_A 387 IAD----EKYNDTFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSSHHPSDITSLDQYVERMKEKQDKIYFMAGSSRKEAE 462 (666)
T ss_dssp SCH----HHHHHTHHHHHHHHHHHHHHHCGGGHHHHHTTCCEEETTSSSCEECHHHHHHHSCTTCCEEEEEECSSHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhcccccceEEEEeCCCHHHHh
Confidence 995 8999 99999999999999999999999999999999987778999999999999999999999999999999
Q ss_pred cChhHHHhhhcCceEEEecCCCcHHHHHHhhhcCCcceEeccccccCcCCCchHHH--HhhHHHHHHHHHHHHHH-hCCc
Q 004444 571 NTPFLEKLLEKDLEVLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGEKNEEKE--KVMKEEFGQTCDWIKKR-LGDK 647 (753)
Q Consensus 571 ~sp~~E~~~~kg~eVL~l~dpiDE~~l~~L~~y~~~~f~~V~~~~l~l~~~~e~~~--~~~~~e~~~L~~~lk~~-L~~k 647 (753)
+|||+|.|+++|||||||+|||||+|+++|.+|+|++|++|++++++|++.+++++ ++.++++++||+|||++ |+++
T Consensus 463 ~sp~~e~~~~kg~eVl~l~~~iDe~~~~~l~e~~gk~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~k~~~L~~~ 542 (666)
T 2o1u_A 463 SSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESEKTKESREAIEKEFEPLLNWMKDKALKDK 542 (666)
T ss_dssp TCGGGHHHHHTTCCCEEECSTHHHHHHHTCCCBTTBEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHHTTTTTT
T ss_pred hCcHHHHHHhCCceEEEeCCchHHHHHHHHHhcCCCceEEecccccccccchhhhhhhhhhHHhHHHHHHHHHhccCCCc
Confidence 99999999999999999999999999999999999999999999999887554443 44567899999999999 9999
Q ss_pred eeEEEEeecCCCCCeEEEecCCCchHHHHHHHHHhcc--C-CCCccccccCceeEEECCCChHHHHHHhhhcCCCCchhH
Q 004444 648 VASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTV--G-DTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDA 724 (753)
Q Consensus 648 V~~V~vS~rL~~sPa~lv~~e~g~s~~Merimkaq~~--~-~~~~~~~~~~k~~LEINp~HpLIk~L~~~~~~~~~d~~~ 724 (753)
|.+|++|+||++||||||++++|||++|||||+||++ . ++....+|..+++|||||+||||++|+++...+++++.+
T Consensus 543 v~~V~~s~rl~~sP~~lv~~~~~~s~~m~r~~~~~~~~~~~~~~~~~~~~~k~~LeiNp~H~li~~l~~~~~~~~~~~~~ 622 (666)
T 2o1u_A 543 IEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIKDMLRRVKEDEDDKTV 622 (666)
T ss_dssp EEEEEECSSCSSCSEEEEBCTTSCCHHHHHHHHHHHHHTSCCCCSCSSSSCCEEEEECTTSHHHHHHHHHHHHCTTCHHH
T ss_pred eeEEEEeecCCCCCeEEEecCcccCHHHHHHHHHhhhhcccCcccccccccCeeeEECCCCHHHHHHHHhhhcccchHHH
Confidence 9999999999999999999999999999999999987 2 333445677899999999999999999877666677889
Q ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHhhC
Q 004444 725 LRVVDLLYDAALVSSGFTVKSGRAWQQDI 753 (753)
Q Consensus 725 ~~l~~~Lyd~AlL~~G~~~edp~~fa~ri 753 (753)
+++|++|||+|+|++|+.++||+.|++||
T Consensus 623 ~~~~~~l~d~All~~G~~~~dp~~f~~r~ 651 (666)
T 2o1u_A 623 SDLAVVLFETATLRSGYLLPDTKAYGDRI 651 (666)
T ss_dssp HHHHHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHH
Confidence 99999999999999999999999999985
No 3
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=100.00 E-value=3.7e-147 Score=1271.61 Aligned_cols=608 Identities=39% Similarity=0.683 Sum_probs=520.4
Q ss_pred CcccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCC
Q 004444 95 LEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGI 174 (753)
Q Consensus 95 ~e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 174 (753)
.|++.||+++++||++|+++||+|+++|||||||||+||++|+|+.++++++......++.|+|.+|+.+++|+|.|||+
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGi 83 (624)
T 2ioq_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 83 (624)
T ss_dssp -----------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEECCC
Confidence 48899999999999999999999999999999999999999999999999988777778899999999889999999999
Q ss_pred CCCHHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCC--CCCcEEEEeeCCCC
Q 004444 175 GMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPK--SDKQYVWEGEANAS 252 (753)
Q Consensus 175 GMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~--~~~~~~w~s~~~~~ 252 (753)
|||++||.++|++||.||++.|+++++.+. ..+...||||||||||+||||++|+|+|++.+ .+.++.|+++++ +
T Consensus 84 GMt~edl~~~l~tiA~Sg~~~f~~~l~~~~--~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~-~ 160 (624)
T 2ioq_A 84 GMTRDEVIDHLGTIAKSGTKSFLESLGSDQ--AKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGE-G 160 (624)
T ss_dssp CCCHHHHHHHHHHHCC-----------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSS-S
T ss_pred CCCHHHHHHHHHhhcccccHHHHHHhcccc--cccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCC-C
Confidence 999999999999999999999988876421 14668999999999999999999999999965 356899999998 8
Q ss_pred ceEEEecCCCCCCCCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEeccccccccccCCCCcccccccchhh
Q 004444 253 SYTIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAETNKDKQDE 332 (753)
Q Consensus 253 ~y~i~~~~~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (753)
.|++.+.+. .++||+|+|+|++++.+|++.++|+++|++||+||++||+++.+ + .++ +
T Consensus 161 ~~~i~~~~~----~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~~~~~-----e--~~~---------~-- 218 (624)
T 2ioq_A 161 EYTVADITK----EDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKR-----E--EKD---------G-- 218 (624)
T ss_dssp CCEEEEECC----SSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEEEEEE-----E--ECS---------S--
T ss_pred eEEEEECCC----CCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeec-----c--ccc---------c--
Confidence 999987632 47999999999999999999999999999999999999999641 0 000 0
Q ss_pred HHHhhhcccceeeeeccccccccCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCceeeeeecccceeeEEEEEeeCCCCC
Q 004444 333 TAEKKKKTKTVVERYWDWELTNETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPAVAPM 412 (753)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~e~iN~~~piW~r~~~~v~~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~ 412 (753)
+ .+.+|+.+|+.+|+|+++++++++++|.+||++++++|++||+|+|+++||+++|+|+||+|+.+|+
T Consensus 219 --------~----~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P~~~p~ 286 (624)
T 2ioq_A 219 --------E----TVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPW 286 (624)
T ss_dssp --------C----EEEEEEECCCCSCTTTSCTTTCCHHHHHHHHHHHHTCCSCCSCCEEEEEESSSCEEEEEECCSSCCG
T ss_pred --------c----cccceEEEeCCccceEecCccchHHHHHHHHHhhccchhcCeEEEEecccceEEEEEEEEeCCcCcc
Confidence 0 1457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCcCeEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHhh
Q 004444 413 GKDDLINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGI 492 (753)
Q Consensus 413 ~~~~~~~~~~~~i~LYv~rVfI~d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~l~~kv~~~L~~l 492 (753)
++|.. ..+++|+||||||||+|+|+ +|||+||+||+|||||+|||||||||+||+|+++++|++.|++||+++|.++
T Consensus 287 ~~~~r--~~~~~i~lyvn~v~I~d~~~-~llP~~l~fv~gvVDs~dl~lNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~~l 363 (624)
T 2ioq_A 287 DMWNR--DHKHGLKLYVQRVFIMDDAE-QFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKL 363 (624)
T ss_dssp GGSSS--SCCCCEEEEESSCEEEEEEC-SSSCTTSTTCEEEEEESSSCTTCCHHHHHHSSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhh--cccCCeEEEECCEEeecchh-ccchhhhhhEEEEECHhhCCCccCchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 98875 46799999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHHHhHHhhhcccCCccChhhccCccceeeccCCC--cccCHHHHHhhcCCCCceEEEEecCCHHHHh
Q 004444 493 SMSENRADYEKFWENFGKYLKMGCIDDRENHKPLAPLLRFFSSQSED--EMISLDEYVENMKPEQKDIYFIAADSVASAR 570 (753)
Q Consensus 493 a~~~d~e~y~~f~~~fg~~lK~G~~eD~~~~e~l~~LLrF~Ss~~~~--~~~SL~eYv~rmk~~Qk~IYY~~~~~~~~~~ 570 (753)
++ +||++|++||++||++||+|+++|..|+++|++||||+||++++ +++||+||++|||++|+.|||++|+|+++++
T Consensus 364 ~~-~d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmke~q~~IyY~t~~~~~~~~ 442 (624)
T 2ioq_A 364 AK-DDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAK 442 (624)
T ss_dssp HH-HCHHHHHHHHHHHHHHHTTHHHHCCTTHHHHHHHCCBEETTSSCSCCCBCHHHHHTTCCTTCCSEEEEECSSHHHHH
T ss_pred Hh-cCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHheEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHh
Confidence 98 79999999999999999999999999999999999999998664 7999999999999999999999999999999
Q ss_pred cChhHHHhhhcCceEEEecCCCcHHHHHHhhhcCCcceEeccccccCcCCC-chHHH--HhhHHHHHHHHHHHHHHhCCc
Q 004444 571 NTPFLEKLLEKDLEVLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGEK-NEEKE--KVMKEEFGQTCDWIKKRLGDK 647 (753)
Q Consensus 571 ~sp~~E~~~~kg~eVL~l~dpiDE~~l~~L~~y~~~~f~~V~~~~l~l~~~-~e~~~--~~~~~e~~~L~~~lk~~L~~k 647 (753)
+|||+|.|+++|||||||++||||+|+++|.+|+|++|++|+++++++++. +++++ ++.++++++||+|||++|+++
T Consensus 443 ~sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~~~ 522 (624)
T 2ioq_A 443 SSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGER 522 (624)
T ss_dssp HCHHHHHHHHHTCCCEEECSSTHHHHTTTCCEETTEEEEETTSCSTTTTTCC-------HHHHHHHHHHHHHHHHHSSSS
T ss_pred hChHHHHHHhCCceEEEecCchHHHHHHHHHhcCCceEEEeecccccccccchhhhhhhhHhHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999988753 22222 345678999999999999999
Q ss_pred eeEEEEeecCCCCCeEEEecCCCchHHHHHHHHHhccCCCCccccccCceeEEECCCChHHHHHHhhhcCCCCchhHHHH
Q 004444 648 VASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRV 727 (753)
Q Consensus 648 V~~V~vS~rL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLIk~L~~~~~~~~~d~~~~~l 727 (753)
|.+|++|+||+++|||||++++|||++|+|||++|++ +++..+++|||||+||||++|... .+++.++++
T Consensus 523 v~~V~~s~rl~~sP~~lv~~~~~~~~~m~r~m~~~~~------~~~~~~~~LeiN~~hpli~~L~~~----~~~~~~~~~ 592 (624)
T 2ioq_A 523 VKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQ------KVPEVKYIFELNPDHVLVKRAADT----EDEAKFSEW 592 (624)
T ss_dssp SSEEEECCCCSSCCEEEECCC---------------------------CCEEEECTTCHHHHTTTSC----CCHHHHHHH
T ss_pred ceEEEEeecCCCCcEEEEecCcCcCHHHHHHHHHhhh------cccccCceEEECCCCHHHHHHHhh----cCHHHHHHH
Confidence 9999999999999999999999999999999999853 234578999999999999999652 256789999
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHhhC
Q 004444 728 VDLLYDAALVSSGFTVKSGRAWQQDI 753 (753)
Q Consensus 728 ~~~Lyd~AlL~~G~~~edp~~fa~ri 753 (753)
|++|||+|+|++|++++||+.|++||
T Consensus 593 ~~~L~d~All~~g~~l~dp~~f~~r~ 618 (624)
T 2ioq_A 593 VELLLDQALLAERGTLEDPNLFIRRM 618 (624)
T ss_dssp HHHHHHHHHHHHHSCCSSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHH
Confidence 99999999999999999999999985
No 4
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=100.00 E-value=2.1e-134 Score=1152.94 Aligned_cols=548 Identities=41% Similarity=0.716 Sum_probs=440.7
Q ss_pred CcccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCC
Q 004444 95 LEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGI 174 (753)
Q Consensus 95 ~e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 174 (753)
.|++.||+++++||++|+++||+||++|||||||||+||++|+|+.+++++++.+....+.|+|.+++.+++|+|.|||+
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 83 (559)
T 1y4s_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 83 (559)
T ss_dssp CEEEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSS
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999988877888899999999889999999999
Q ss_pred CCCHHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCC--CCcEEEEeeCCCC
Q 004444 175 GMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKS--DKQYVWEGEANAS 252 (753)
Q Consensus 175 GMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~--~~~~~w~s~~~~~ 252 (753)
|||++||.++|++||.||++.|+++++.+. ..+...||||||||||+||||++|+|+|++.+. ..++.|+++++ +
T Consensus 84 GMt~edl~~~l~tiA~Sg~~~f~e~l~~~~--~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~-~ 160 (559)
T 1y4s_A 84 GMTRDEVIDHLGTIAKSGTKSFLESLGSDQ--AKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGE-G 160 (559)
T ss_dssp CCCHHHHHHHHSCCSCCCCCCTTCC----------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSS-S
T ss_pred CCCHHHHHHHHhhhcccccHHHHHHhhccc--cccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCC-C
Confidence 999999999999999999999977665321 135689999999999999999999999999653 55899999998 9
Q ss_pred ceEEEecCCCCCCCCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEeccccccccccCCCCcccccccchhh
Q 004444 253 SYTIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAETNKDKQDE 332 (753)
Q Consensus 253 ~y~i~~~~~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (753)
.|++.+.+. .++||+|+|+|++++.+|++.++|+++|++||+||++||+++.+ + .++ +
T Consensus 161 ~~~i~~~~~----~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~~~~~-----e--~~~---------~-- 218 (559)
T 1y4s_A 161 EYTVADITK----EDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKR-----E--EKD---------G-- 218 (559)
T ss_dssp EEEEEEECC----CSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEEEEEE-----E--CST---------T--
T ss_pred eeEEeECCC----CCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeec-----c--ccc---------c--
Confidence 999987632 47999999999999999999999999999999999999999641 0 000 0
Q ss_pred HHHhhhcccceeeeeccccccccCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCceeeeeecccceeeEEEEEeeCCCCC
Q 004444 333 TAEKKKKTKTVVERYWDWELTNETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPAVAPM 412 (753)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~e~iN~~~piW~r~~~~v~~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~ 412 (753)
+ .+.+|+.+|+.+|+|+++++++++++|.+||++++++|.+||+|+|+++||+++|+|+||+|+.+|+
T Consensus 219 --------~----~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P~~~p~ 286 (559)
T 1y4s_A 219 --------E----TVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPW 286 (559)
T ss_dssp --------S----CEEEEEECCCCCCGGGSCGGGCCHHHHHHHHHHHHTCSSCEEEEEEECCCSSSCEEEEEEEESSCCT
T ss_pred --------c----cccceEEEeCCccceecCcccccHHHHHHHHHhhhhhhhcCeEEEEeccCCceEEEEEEEcCCcCcc
Confidence 0 1357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCcCeEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHhh
Q 004444 413 GKDDLINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGI 492 (753)
Q Consensus 413 ~~~~~~~~~~~~i~LYv~rVfI~d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~l~~kv~~~L~~l 492 (753)
++|.. ..+++|+||||||||+|+|+ +|||+||+||+|||||+|||||||||+||+|+++++|++.|++|++++|.++
T Consensus 287 ~~~~r--~~~~~i~lyvn~v~I~d~~~-~llP~~l~fv~gvVDs~dlplNVSRE~lq~~~~l~~I~~~l~kkv~~~l~~l 363 (559)
T 1y4s_A 287 DMWNR--DHKHGLKLYVQRVFIMDDAE-QFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKL 363 (559)
T ss_dssp TCSSS--SCCCCEEEEETTEEEEEEEG-GGSCGGGTTCEEEEEESSSCTTCCTTGGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhh--cccCCeEEEEcCEEeecchh-hhChHhHhheeEeeChhhCCCeeCchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 98875 46799999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHHHhHHhhhcccCCccChhhccCccceeeccCCC--cccCHHHHHhhcCCCCceEEEEecCCHHHHh
Q 004444 493 SMSENRADYEKFWENFGKYLKMGCIDDRENHKPLAPLLRFFSSQSED--EMISLDEYVENMKPEQKDIYFIAADSVASAR 570 (753)
Q Consensus 493 a~~~d~e~y~~f~~~fg~~lK~G~~eD~~~~e~l~~LLrF~Ss~~~~--~~~SL~eYv~rmk~~Qk~IYY~~~~~~~~~~ 570 (753)
++ +||++|++||++||++||+|+++|..|+++|++||||+||++++ +++||+||++|||++|+.|||++|+|+++++
T Consensus 364 ~~-~d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmk~~q~~IyY~t~~~~~~~~ 442 (559)
T 1y4s_A 364 AK-DDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAK 442 (559)
T ss_dssp HH-HCHHHHHHHHHHHHHHHTTSTTTCGGGHHHHHTTCEEBCSSCSSSSCCEETTSSSTTCCTTCSCCBEECCSSSHHHH
T ss_pred Hh-cCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHhhEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHh
Confidence 98 79999999999999999999999999999999999999998654 7999999999999999999999999999999
Q ss_pred cChhHHHhhhcCceEEEecCCCcHHHHHHhhhcCCcceEeccccccCcCCC-chHHH--HhhHHHHHHHHHHHHHHhCCc
Q 004444 571 NTPFLEKLLEKDLEVLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGEK-NEEKE--KVMKEEFGQTCDWIKKRLGDK 647 (753)
Q Consensus 571 ~sp~~E~~~~kg~eVL~l~dpiDE~~l~~L~~y~~~~f~~V~~~~l~l~~~-~e~~~--~~~~~e~~~L~~~lk~~L~~k 647 (753)
+|||+|.|+++|||||||++||||+|+++|.+|+|++|++|+++++++++. +++++ ++.++++++||+|||++|+++
T Consensus 443 ~sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~~~ 522 (559)
T 1y4s_A 443 SSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGER 522 (559)
T ss_dssp TCSSSHHHHHTTCCCEECCSTTHHHHHHHCCCCSSSCCBCC---------------------------------------
T ss_pred hChHHHHHHhCCceEEEecChHHHHHHHHHHHhCCceEEecccccccccccchhhhhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999988654 22222 344678999999999999999
Q ss_pred eeEEEEeecCCCCCeEEEecCCCchHHHHHHHHHhc
Q 004444 648 VASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQT 683 (753)
Q Consensus 648 V~~V~vS~rL~~sPa~lv~~e~g~s~~Merimkaq~ 683 (753)
|.+|++|+||++||||||++++|||++|+|||++|+
T Consensus 523 v~~V~~s~rl~~sp~~~v~~~~~~~~~m~~~~~~~~ 558 (559)
T 1y4s_A 523 VKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAG 558 (559)
T ss_dssp ------------------------------------
T ss_pred ceEEEEeccCCCCCEEEEeCCCCcCHHHHHHHHhcC
Confidence 999999999999999999999999999999999984
No 5
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=100.00 E-value=1.1e-116 Score=976.34 Aligned_cols=401 Identities=43% Similarity=0.794 Sum_probs=360.5
Q ss_pred cccccccCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCceeeeeecccceeeEEEEEeeCCCCCCCccccCCCCcCeEEE
Q 004444 349 DWELTNETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPAVAPMGKDDLINPKTKNIRLY 428 (753)
Q Consensus 349 ~~e~iN~~~piW~r~~~~v~~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LY 428 (753)
+|++||+++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+.+||++|+.. ..+++|+||
T Consensus 12 ~~e~iN~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~dl~~~~-~~~~~ikLY 90 (444)
T 3hjc_A 12 ENLYFQGHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFEPN-KKRNNIKLY 90 (444)
T ss_dssp -------CCCGGGSCGGGCCHHHHHHHHHHTSSCCSCCSEEEEEEECSSSCEEEEEEECSSCCC----CC-CCCCSEEEE
T ss_pred CceeccCCCCCCCCCcccCCHHHHHHHHHHhcCCccCCceeEEEEecccceeeEEEecCCCCCcchhhhh-hhcCCeeEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999998742 467999999
Q ss_pred eeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHH
Q 004444 429 VKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGISMSENRADYEKFWENF 508 (753)
Q Consensus 429 v~rVfI~d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~l~~kv~~~L~~la~~~d~e~y~~f~~~f 508 (753)
||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++|++.|++||+++|.+++ +|+++|++||++|
T Consensus 91 v~rVfI~D~~~-ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kKvl~~L~~la--~d~e~Y~kFw~~f 167 (444)
T 3hjc_A 91 VRRVFIMDNCE-DLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVA--ENKEDYKQFYEQF 167 (444)
T ss_dssp ETTEEEESCCG-GGSCGGGTTCEEEEEESSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHT--TSHHHHHHHHHHH
T ss_pred EeeeEeecchh-hhchHHHhhheEEeccCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999 5899999999999
Q ss_pred hHHhhhcccCCccChhhccCccceeeccCCCcccCHHHHHhhcCCCCceEEEEecCCHHHHhcChhHHHhhhcCceEEEe
Q 004444 509 GKYLKMGCIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAADSVASARNTPFLEKLLEKDLEVLYL 588 (753)
Q Consensus 509 g~~lK~G~~eD~~~~e~l~~LLrF~Ss~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~~~~~~~~sp~~E~~~~kg~eVL~l 588 (753)
|.+||+|+++|..|+++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|.|+++|||||||
T Consensus 168 g~~lK~G~~eD~~~~~~l~~lLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l 247 (444)
T 3hjc_A 168 GKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFM 247 (444)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHCCBCBTTTTTSCBCHHHHHHTCCTTCCEEEEEECSCHHHHHTCGGGHHHHHHTCCEEEE
T ss_pred hHHHhccccccHHHHHHHHHheEeeeecCCCCcCcHHHHHHhccccCceEEEEeCCCHHHHHhChHHHHHHhCCcEEEEe
Confidence 99999999999999999999999999987788999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHhhhcCCcceEeccccccCcCCCchHHH--HhhHHHHHHHHHHHHHHhCCceeEEEEeecCCCCCeEEEe
Q 004444 589 VDPIDEIAVQNLKSYKEKNFVDISKEDLDLGEKNEEKE--KVMKEEFGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVS 666 (753)
Q Consensus 589 ~dpiDE~~l~~L~~y~~~~f~~V~~~~l~l~~~~e~~~--~~~~~e~~~L~~~lk~~L~~kV~~V~vS~rL~~sPa~lv~ 666 (753)
++||||+|+++|.+|+|++|++|+++++++++.+++++ ++.++++++||+|+|++|+++|.+|++|+||++||||||+
T Consensus 248 ~d~iDe~~i~~L~e~~gk~f~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~L~~kV~~V~vS~RL~~sP~~lv~ 327 (444)
T 3hjc_A 248 TEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILVT 327 (444)
T ss_dssp CSHHHHHHHHHCCEETTEEEEETTBSSCCCCCCHHHHHHHHHHHHHTHHHHHHHHHHHGGGCSEEEECSSCSSSSEEEEB
T ss_pred CCchHHHHHHHHHHhCCceEEEeccccccchhhhhhhhhhHHHHHHHHHHHHHHHHHhcCcceEEEecCCCCCCCeEEEc
Confidence 99999999999999999999999999999876554443 4456789999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHhccCCCCccccccCceeEEECCCChHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHhCCCCCccH
Q 004444 667 AKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTVKSG 746 (753)
Q Consensus 667 ~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLIk~L~~~~~~~~~d~~~~~l~~~Lyd~AlL~~G~~~edp 746 (753)
+++|||++|||||++|++.++...++|..+++|||||+||||++|.++...+++++.++++|++|||+|+|++|+.++||
T Consensus 328 ~e~g~s~~Merimka~~~~~~~~~~~~~~k~~LEINp~Hpli~~L~~~~~~d~~~~~~~~l~~lLyd~AlL~~G~~ledp 407 (444)
T 3hjc_A 328 SEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDP 407 (444)
T ss_dssp CSSSBCHHHHHHHHHC--------CTTBCCCEEEECTTSHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHTCCCSCH
T ss_pred CCccccHHHHHHHHHhcccccccccccccCeeEEECCCCHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCCCCcccH
Confidence 99999999999999998876544456778999999999999999999887777788999999999999999999999999
Q ss_pred HHHHhhC
Q 004444 747 RAWQQDI 753 (753)
Q Consensus 747 ~~fa~ri 753 (753)
+.|++||
T Consensus 408 ~~f~~ri 414 (444)
T 3hjc_A 408 TGYAERI 414 (444)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999985
No 6
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=100.00 E-value=6.2e-116 Score=966.14 Aligned_cols=395 Identities=45% Similarity=0.833 Sum_probs=349.1
Q ss_pred cCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCceeeeeecccceeeEEEEEeeCCCCCCCccccCCCCcCeEEEeeeEEe
Q 004444 355 ETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPAVAPMGKDDLINPKTKNIRLYVKRVFI 434 (753)
Q Consensus 355 ~~~piW~r~~~~v~~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rVfI 434 (753)
.++|||+|+|++||+|||++|||+++++|++||+|+||++||+++|+||||||+.+||++|+.. ..+++|+||||||||
T Consensus 2 ~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~e~~~lLyiP~~ap~d~~~~~-~~~~~ikLYvrrVfI 80 (448)
T 3q6m_A 2 ATKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENR-KKKNNIKLYVRRVFI 80 (448)
T ss_dssp --CCGGGSCTTSCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC----------CCEEEEETTEEE
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHhcCCccCChheeeeccCCCeeeEEEEEccCCCchhhhhhh-hhccceeEEeeeeEE
Confidence 3679999999999999999999999999999999999999999999999999999999999742 467999999999999
Q ss_pred ecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhHHhhh
Q 004444 435 SDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGISMSENRADYEKFWENFGKYLKM 514 (753)
Q Consensus 435 ~d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~l~~kv~~~L~~la~~~d~e~y~~f~~~fg~~lK~ 514 (753)
+|+|+ +|||+||+||||||||+|||||||||+||+|++|++|++.|++||+++|.+++ +|+++|++||++||.+||+
T Consensus 81 ~d~~~-ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~Irk~i~kKvl~~L~~la--~d~e~Y~~f~~~fg~~lK~ 157 (448)
T 3q6m_A 81 MDNCE-ELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELA--EDKENYKKFYEQFSKNIKL 157 (448)
T ss_dssp ESCCT-TSSCGGGTTCEEEEEESCCC---------CCSHHHHHHHHHHHHHHHHHHHHT--SSHHHHHHHHHHHHHHHHH
T ss_pred ecchh-hhchhhhhheeEEeccCCCCccccHHhhccCHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHhHHHHh
Confidence 99999 99999999999999999999999999999999999999999999999999999 6999999999999999999
Q ss_pred cccCCccChhhccCccceeeccCCCcccCHHHHHhhcCCCCceEEEEecCCHHHHhcChhHHHhhhcCceEEEecCCCcH
Q 004444 515 GCIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAADSVASARNTPFLEKLLEKDLEVLYLVDPIDE 594 (753)
Q Consensus 515 G~~eD~~~~e~l~~LLrF~Ss~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~~~~~~~~sp~~E~~~~kg~eVL~l~dpiDE 594 (753)
|+++|..|+++|++||||+||+++++++||+||++||+++|+.|||++|+|++++++|||+|.|+++|||||||++||||
T Consensus 158 Gi~eD~~n~~~l~~LLrF~Ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iDe 237 (448)
T 3q6m_A 158 GIHEDSQNRKKLSELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDE 237 (448)
T ss_dssp HHHHCGGGHHHHHTTCEEEETTTTTSCEEHHHHHHTCCSSCCEEEEEECSCHHHHHTSGGGHHHHHHTCCEEEECSTHHH
T ss_pred hhcccHHHHHHHHHhhEeeeccCCCceEeHHHHHHhccccCceEEEEecCCHHHHHhChHHHHHHHCCCEEEEecCchHH
Confidence 99999999999999999999987778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcceEeccccccCcCCCchHHH--HhhHHHHHHHHHHHHHHhCCceeEEEEeecCCCCCeEEEecCCCch
Q 004444 595 IAVQNLKSYKEKNFVDISKEDLDLGEKNEEKE--KVMKEEFGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWS 672 (753)
Q Consensus 595 ~~l~~L~~y~~~~f~~V~~~~l~l~~~~e~~~--~~~~~e~~~L~~~lk~~L~~kV~~V~vS~rL~~sPa~lv~~e~g~s 672 (753)
+|+++|.+|+|++|++|++++++|++.+++++ ++.+++|++||+|||++||++|.+|++|+||++||||||++++|||
T Consensus 238 ~~i~~L~ef~gk~~~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~L~~kV~~V~vS~RL~~sP~~lv~~e~g~s 317 (448)
T 3q6m_A 238 YCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWT 317 (448)
T ss_dssp HHTTTCCEETTEEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHHHTGGGCSEEEECSSCSSSSEEEEECSSSCC
T ss_pred HHHHHHHhhCCceEEEecccccCcccchhhhhhHHHHHHHHHHHHHHHHHHhcCcceEEEecCCCCCCCeEEEeCCcchh
Confidence 99999999999999999999999876654443 4456689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCccccccCceeEEECCCChHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHhCCCCCccHHHHHhh
Q 004444 673 ANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTVKSGRAWQQD 752 (753)
Q Consensus 673 ~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLIk~L~~~~~~~~~d~~~~~l~~~Lyd~AlL~~G~~~edp~~fa~r 752 (753)
++|||||++|++++++..+++..+++|||||+||||++|.++...+++++.++++|++|||+|+|++|++++||+.|++|
T Consensus 318 ~~Merimkaq~~~d~~~~~~~~~kk~LEINp~Hpli~~L~~~~~~d~~~~~~~~~~~lLyd~AlL~~G~~l~DP~~f~~r 397 (448)
T 3q6m_A 318 ANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANR 397 (448)
T ss_dssp HHHHHHCCC--------------CEEEEECTTCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHH
T ss_pred HHHHHHHHHhhccccccccccccCceeEECCCCHHHHHHHHHhhcccchhHHHHHHHHHHHhHHhcCCCCCCCHHHHHHH
Confidence 99999999998776555567788999999999999999999887777788999999999999999999999999999998
Q ss_pred C
Q 004444 753 I 753 (753)
Q Consensus 753 i 753 (753)
|
T Consensus 398 i 398 (448)
T 3q6m_A 398 I 398 (448)
T ss_dssp H
T ss_pred H
Confidence 6
No 7
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-113 Score=944.58 Aligned_cols=393 Identities=43% Similarity=0.787 Sum_probs=370.6
Q ss_pred CCCCcccCCCCCCHHHHHHHHHHhhcCCCCCceeeeeecccceeeEEEEEeeCCCCCCCccccCCCCcCeEEEeeeEEee
Q 004444 356 TQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPAVAPMGKDDLINPKTKNIRLYVKRVFIS 435 (753)
Q Consensus 356 ~~piW~r~~~~v~~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rVfI~ 435 (753)
++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+.+|+++|+.. ..+++|+||||||||+
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~-~~~~~ikLYvrrVfI~ 79 (405)
T 2cge_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESK-KKKNNIKLYVRRVFIT 79 (405)
T ss_dssp CCCGGGSCGGGSCTTHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCSSCSSSSC-CCCCCCEEEETTEEEE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHhcCCCcCCeeEEEeccCCCcceeEEEEecCCCchhhhhhh-hccCCeEEEEeeeEec
Confidence 469999999999999999999999999999999999999999999999999999999999853 4579999999999999
Q ss_pred cCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhHHhhhc
Q 004444 436 DDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGISMSENRADYEKFWENFGKYLKMG 515 (753)
Q Consensus 436 d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~l~~kv~~~L~~la~~~d~e~y~~f~~~fg~~lK~G 515 (753)
|+|+ +|||+||+||||||||+|||||||||+||+|+++++|++.|++||+++|.++++ |+++|++||++||.+||+|
T Consensus 80 d~~~-~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~~~l~kkvl~~L~~la~--~~e~y~kf~~~fg~~lK~G 156 (405)
T 2cge_A 80 DEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAE--DSEQFEKFYSAFSKNIKLG 156 (405)
T ss_dssp SSCS-SSSCGGGTTCEEEEEESSCCSSCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHHH
T ss_pred Cchh-hhChHHHHHHhhcccccccCcccChhhhcccHHHHHHHHHHHHHHHHHHHHHhh--CHHHHHHHHHHhhhhhcch
Confidence 9999 999999999999999999999999999999999999999999999999999995 6999999999999999999
Q ss_pred ccCCccChhhccCccceeeccCCCcccCHHHHHhhcCCCCceEEEEecCCHHHHhcChhHHHhhhcCceEEEecCCCcHH
Q 004444 516 CIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAADSVASARNTPFLEKLLEKDLEVLYLVDPIDEI 595 (753)
Q Consensus 516 ~~eD~~~~e~l~~LLrF~Ss~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~~~~~~~~sp~~E~~~~kg~eVL~l~dpiDE~ 595 (753)
|++|+.|+++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|.|+++|||||||++||||+
T Consensus 157 ~~eD~~~~~~l~~lLrF~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~~E~~k~kG~EVL~l~d~iDe~ 236 (405)
T 2cge_A 157 VHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEY 236 (405)
T ss_dssp HHHCTTTHHHHHTTCEECBSSCSSSCEEHHHHHHTCCTTCCSEEEEECSCHHHHHTCTTHHHHHHHTCCEEEECSHHHHH
T ss_pred hccCHHHHHHHHHhheeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCEEEEecCchHHH
Confidence 99999999999999999999876789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcceEeccccccCcCCCchHHH--HhhHHHHHHHHHHHHHHhCCceeEEEEeecCCCCCeEEEecCCCchH
Q 004444 596 AVQNLKSYKEKNFVDISKEDLDLGEKNEEKE--KVMKEEFGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSA 673 (753)
Q Consensus 596 ~l~~L~~y~~~~f~~V~~~~l~l~~~~e~~~--~~~~~e~~~L~~~lk~~L~~kV~~V~vS~rL~~sPa~lv~~e~g~s~ 673 (753)
|+++|.+|+|++|++|+++ +++++.+++++ ++.++++++|++|||++|+++|.+|++|+||++||||||++++|||+
T Consensus 237 ~i~~L~e~~gk~~~sV~~~-l~l~~~e~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~~s~rl~~sP~~lv~~~~~~s~ 315 (405)
T 2cge_A 237 AFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSA 315 (405)
T ss_dssp HHHHHCBSSSBEEESSBCC-CCSSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEECSSCCSSSEEEEECSSSCCH
T ss_pred HHHHHHHhCCceeEEcccc-ccccccchhhhhhhHhHHHHHHHHHHHHHHhcCcceEEEEEeccCCCCeEEEeccccccH
Confidence 9999999999999999999 88876554443 34567899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCccccccCceeEEECCCChHHHHHHhhhcCC-CCchhHHHHHHHHHHHHHHhCCCCCccHHHHHhh
Q 004444 674 NMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNC-PDDNDALRVVDLLYDAALVSSGFTVKSGRAWQQD 752 (753)
Q Consensus 674 ~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLIk~L~~~~~~~-~~d~~~~~l~~~Lyd~AlL~~G~~~edp~~fa~r 752 (753)
+|||||++|+++++.+.+++..+++|||||+||||++|......+ ++++.++++|++|||+|+|++|+.++||+.|++|
T Consensus 316 ~mer~~k~~~~~~~~~~~~~~~k~~LeiNp~Hpli~~L~~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~~~dp~~f~~r 395 (405)
T 2cge_A 316 NMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASR 395 (405)
T ss_dssp HHHHHHHHHHTTSSSCCCCCCCCEEEEECTTSHHHHHHHHHHTTTGGGCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHH
T ss_pred HHHHHHHHhhccccccccccccCeeEEEcCCCHHHHHHHHhhhccccCHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHH
Confidence 999999999877666556677899999999999999999876554 4567899999999999999999999999999998
Q ss_pred C
Q 004444 753 I 753 (753)
Q Consensus 753 i 753 (753)
|
T Consensus 396 ~ 396 (405)
T 2cge_A 396 I 396 (405)
T ss_dssp H
T ss_pred H
Confidence 5
No 8
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=100.00 E-value=2.6e-89 Score=717.10 Aligned_cols=286 Identities=46% Similarity=0.828 Sum_probs=241.8
Q ss_pred CCCCcccCCCCCCHHHHHHHHHHhhcCCCCCceeeeeecccceeeEEEEEeeCCCCCCCccccCCCCcCeEEEeeeEEee
Q 004444 356 TQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPAVAPMGKDDLINPKTKNIRLYVKRVFIS 435 (753)
Q Consensus 356 ~~piW~r~~~~v~~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rVfI~ 435 (753)
++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++||++|+.. ..++||+||||||||+
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~~H~~veg~~~~~~lLyiP~~ap~dl~~~~-~~~~~ikLYvrrVfI~ 79 (288)
T 1hk7_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESK-KKKNNIKLYVRRVFIT 79 (288)
T ss_dssp CCCGGGSCTTTCCTTHHHHHHHHHHSCCSCCSEEEEEEECSSSCEEEEEEECSSCCCCCSSSC-CCCCCCEEEETTEEEE
T ss_pred CCCcccCCchhCCHHHHHHHHHHhcCCcccCeeEEEEeccCCceeEEEEEecCCCcchhhhhh-hccCCeEEEEeeeEee
Confidence 469999999999999999999999999999999999999999999999999999999999753 3579999999999999
Q ss_pred cCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhHHhhhc
Q 004444 436 DDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGISMSENRADYEKFWENFGKYLKMG 515 (753)
Q Consensus 436 d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~l~~kv~~~L~~la~~~d~e~y~~f~~~fg~~lK~G 515 (753)
|+|+ +|||+||+||||||||+|||||||||+||+|+++++|++.|++|++++|.+++ +|+++|++||++||.+||+|
T Consensus 80 d~~~-~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la--~d~e~Y~kf~~~fg~~lK~G 156 (288)
T 1hk7_A 80 DEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIA--EDSEQFEKFYSAFSKNIKLG 156 (288)
T ss_dssp SSCS-SSSCGGGTTCEEEEEESSCCCC-------CCHHHHHHHHHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHH
T ss_pred cchh-hhchHHHHHHhhcccccccCCcccHHHhccCHHHHHHHHHHHHHHHHHHHHHh--hCHHHHHHHHHHHhHHHhhh
Confidence 9999 99999999999999999999999999999999999999999999999999999 58999999999999999999
Q ss_pred ccCCccChhhccCccceeeccCCCcccCHHHHHhhcCCCCceEEEEecCCHHHHhcChhHHHhhhcCceEEEecCCCcHH
Q 004444 516 CIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAADSVASARNTPFLEKLLEKDLEVLYLVDPIDEI 595 (753)
Q Consensus 516 ~~eD~~~~e~l~~LLrF~Ss~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~~~~~~~~sp~~E~~~~kg~eVL~l~dpiDE~ 595 (753)
+++|..|+++|++||||+||+++++++||+||++||+++|+.|||++|+|++++++|||+|.|+++|||||||+|||||+
T Consensus 157 i~eD~~nr~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kg~EVL~l~d~iDe~ 236 (288)
T 1hk7_A 157 VHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEY 236 (288)
T ss_dssp HHHCTTTHHHHHTTCCBEESSCSSSCBCHHHHHHHSCTTCCEEEEEECSSHHHHHTCGGGHHHHTTTCCCEEECSHHHHH
T ss_pred hcccHHHHHHHHHHhccccccCCCCcccHHHHHhhCcCCCceEEEEeCCCHHHHhcCHHHHHHHHCCCEEEEecCchHHH
Confidence 99999999999999999999877789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcceEeccccccCcCCCchHHH--HhhHHHHHHHHHHHHHHhCC
Q 004444 596 AVQNLKSYKEKNFVDISKEDLDLGEKNEEKE--KVMKEEFGQTCDWIKKRLGD 646 (753)
Q Consensus 596 ~l~~L~~y~~~~f~~V~~~~l~l~~~~e~~~--~~~~~e~~~L~~~lk~~L~~ 646 (753)
||++|.+|+|++|++|+++ +++++.+++++ ++.++++++||+|||++||+
T Consensus 237 ~i~~L~e~~gk~~~sv~k~-~~l~~~~eek~~~e~~~~~~~~L~~~~K~~L~~ 288 (288)
T 1hk7_A 237 AFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGD 288 (288)
T ss_dssp HHHHHCEETTEEEEETTTC----------------------------------
T ss_pred HHhhhhhcCCceeeecccc-ccccchhhhhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999998 88876544433 34466899999999999974
No 9
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=100.00 E-value=9.2e-89 Score=717.48 Aligned_cols=290 Identities=42% Similarity=0.711 Sum_probs=248.2
Q ss_pred CCCCcccCCCCCCHHHHHHHHHHhhcCCCCCceeeeeecccceeeEEEEEeeCCCCCCCccccCCCCcCeEEEeeeEEee
Q 004444 356 TQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPAVAPMGKDDLINPKTKNIRLYVKRVFIS 435 (753)
Q Consensus 356 ~~piW~r~~~~v~~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rVfI~ 435 (753)
++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+.+|+++|+. ..+++|+||||||||+
T Consensus 2 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~vEg~~~~~~lLyiP~~ap~dl~~~--~~~~~ikLYvrrVfI~ 79 (303)
T 2gq0_A 2 AQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNR--DHKHGLKLYVQRVFIM 79 (303)
T ss_dssp CCCGGGSCGGGSCHHHHHHHHHHHHTCCSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTST--TCCCSEEEEETTEEEE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHHcCCccCcceeEEeccccccceeEEEEecCCCCchhhhh--hccCCeEEEEeceEee
Confidence 47999999999999999999999999999999999999999999999999999999999875 4679999999999999
Q ss_pred cCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhHHhhhc
Q 004444 436 DDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGISMSENRADYEKFWENFGKYLKMG 515 (753)
Q Consensus 436 d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~l~~kv~~~L~~la~~~d~e~y~~f~~~fg~~lK~G 515 (753)
|+|+ +|||+||+||||||||+|||||||||+||+|+++++|++.|++|++++|+++++ +|+++|++||++||.+||+|
T Consensus 80 D~~e-eLlP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~Irk~l~kKvl~~L~~la~-~d~e~Y~kF~~~fg~~lK~G 157 (303)
T 2gq0_A 80 DDAE-QFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAK-DDAEKYQTFWQQFGLVLKEG 157 (303)
T ss_dssp EEEG-GGSCGGGTTCEEEEEESSSCTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHTTH
T ss_pred cchh-hhchHHHHHhhcccccccCCcccchHhhcccHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhhh
Confidence 9999 999999999999999999999999999999999999999999999999999998 89999999999999999999
Q ss_pred ccCCccChhhccCccceeeccCC--CcccCHHHHHhhcCCCCceEEEEecCCHHHHhcChhHHHhhhcCceEEEecCCCc
Q 004444 516 CIDDRENHKPLAPLLRFFSSQSE--DEMISLDEYVENMKPEQKDIYFIAADSVASARNTPFLEKLLEKDLEVLYLVDPID 593 (753)
Q Consensus 516 ~~eD~~~~e~l~~LLrF~Ss~~~--~~~~SL~eYv~rmk~~Qk~IYY~~~~~~~~~~~sp~~E~~~~kg~eVL~l~dpiD 593 (753)
+++|..|+++|++||||+||+++ ++++||+||++|||++|+.|||++|+|++++++|||+|.|+++|||||||++|||
T Consensus 158 i~eD~~nr~~l~~LLrF~Ss~~~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iD 237 (303)
T 2gq0_A 158 PAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRID 237 (303)
T ss_dssp HHHCGGGHHHHHTTCCBEETTTTCCCCCBCHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCEEEECSTTH
T ss_pred hhcCHHHHHHHHHhheeeecCCCccCCeeeHHHHHHhcccCCceEEEEeCCCHHHHhcChHHHHHHHCCCeEEEeCchhH
Confidence 99999999999999999999865 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcceEeccccccCcCCCchHHHHhhHHHHHHHHHHHHHHhCCcee--EEEEeecCCCCCeEEEec
Q 004444 594 EIAVQNLKSYKEKNFVDISKEDLDLGEKNEEKEKVMKEEFGQTCDWIKKRLGDKVA--SVQISNRLSSSPCVLVSA 667 (753)
Q Consensus 594 E~~l~~L~~y~~~~f~~V~~~~l~l~~~~e~~~~~~~~e~~~L~~~lk~~L~~kV~--~V~vS~rL~~sPa~lv~~ 667 (753)
|+|+++|.+|+|++|++|++++++|++.+ ++.||++|. +|.+|+||++||||+++.
T Consensus 238 e~~i~~L~e~~gk~f~sV~k~~l~l~~~~------------------~~~l~~~~~~~~~~~~~~~~s~~~~~~~~ 295 (303)
T 2gq0_A 238 EWMMNYLTEFDGKPFQSVSKVDESLEKLA------------------DGDLGTLVPRGSMAISDPNSSSVDKLAAA 295 (303)
T ss_dssp HHHTTTCCEETTEEEEETTC--------------------------------------------------------
T ss_pred HHHHHHHHhcCCcceEEeeccccCccccc------------------hhhhccccccCCccccCcCCcchHHHHHH
Confidence 99999999999999999999998876322 355677888 899999999999999874
No 10
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=100.00 E-value=6.9e-86 Score=685.86 Aligned_cols=263 Identities=48% Similarity=0.873 Sum_probs=249.6
Q ss_pred ccCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCceeeeeecccceeeEEEEEeeCCCCCCCccccCCCCcCeEEEeeeEE
Q 004444 354 NETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPAVAPMGKDDLINPKTKNIRLYVKRVF 433 (753)
Q Consensus 354 N~~~piW~r~~~~v~~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rVf 433 (753)
|+++|||+|+|++||+|||.+|||+++++|++||+|+|+++||+++|+||||||+.+||++|+.. ..+++|+|||||||
T Consensus 1 ~~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~-~~~~~ikLYv~rVf 79 (268)
T 3pry_A 1 MKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENK-KKKNNIKLYVRRVF 79 (268)
T ss_dssp -CCSCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC---------CCCEEEEETTEE
T ss_pred CCCCCCCCCChhhCCHHHHHHHHHHhcCCccCchheeeecccCCeeEEEEEEccCCCchhhhhhh-hhcCCeeEEEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999742 46799999999999
Q ss_pred eecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhHHhh
Q 004444 434 ISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGISMSENRADYEKFWENFGKYLK 513 (753)
Q Consensus 434 I~d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~l~~kv~~~L~~la~~~d~e~y~~f~~~fg~~lK 513 (753)
|+|+|+ +|||+||+||||||||+|||||||||+||+|+++++|++.|++|++++|+++| +|+++|++||++||.+||
T Consensus 80 I~d~~~-ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la--~d~e~Y~~f~~~fg~~lK 156 (268)
T 3pry_A 80 IMDSCD-ELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA--EDKENYKKFYEAFSKNLK 156 (268)
T ss_dssp EESCCG-GGSCGGGTTCEEEEEESSSCSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHH
T ss_pred eecchh-hhccchhhheEEEecCCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHH
Confidence 999999 99999999999999999999999999999999999999999999999999999 699999999999999999
Q ss_pred hcccCCccChhhccCccceeeccCCCcccCHHHHHhhcCCCCceEEEEecCCHHHHhcChhHHHhhhcCceEEEecCCCc
Q 004444 514 MGCIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAADSVASARNTPFLEKLLEKDLEVLYLVDPID 593 (753)
Q Consensus 514 ~G~~eD~~~~e~l~~LLrF~Ss~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~~~~~~~~sp~~E~~~~kg~eVL~l~dpiD 593 (753)
+|+++|..|+++|++||||+||+++++++||+||++||+++|+.|||++|+|++++++|||+|.++++|||||||+||||
T Consensus 157 ~G~~eD~~~~~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Q~~IyYitg~s~~~~~~sp~~E~~k~kg~EVL~l~d~iD 236 (268)
T 3pry_A 157 LGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPID 236 (268)
T ss_dssp HHHHHCGGGHHHHHHTCEEEETTTTTSCEEHHHHHHTSCTTCCEEEEECSCCHHHHHTCHHHHHHHTTTCCEEECCSTTH
T ss_pred hHhhCCHHHHHHHHHHheeeeccCCCccEeHHHHHHhcccCCceEEEEeCCCHHHHHhChHHHHHHHcCceEEEeCCchH
Confidence 99999999999999999999998777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcceEeccccccCcCC
Q 004444 594 EIAVQNLKSYKEKNFVDISKEDLDLGE 620 (753)
Q Consensus 594 E~~l~~L~~y~~~~f~~V~~~~l~l~~ 620 (753)
|+|+++|.+|+|++|++|++++++|++
T Consensus 237 e~~i~~L~ef~gk~l~sv~k~~l~l~e 263 (268)
T 3pry_A 237 EYCVQQLKEFDGKSLVSVTKEGLELAE 263 (268)
T ss_dssp HHHHHHHCEETTEEEEETTCSSCCCCC
T ss_pred HHHHHHHHhcCCceeeecccccCCCcc
Confidence 999999999999999999999998874
No 11
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=100.00 E-value=1.2e-85 Score=682.08 Aligned_cols=257 Identities=47% Similarity=0.859 Sum_probs=241.6
Q ss_pred ccCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCceeeeeecccceeeEEEEEeeCCCCCCCccccCCCCcCeEEEeeeEE
Q 004444 354 NETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPAVAPMGKDDLINPKTKNIRLYVKRVF 433 (753)
Q Consensus 354 N~~~piW~r~~~~v~~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rVf 433 (753)
|+++|||+|+|++||+|||.+|||+++++|++||+|+|+++||+++|+||||||+.+|+++|+.. ..+++|+|||||||
T Consensus 1 N~~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~-~~~~~ikLYvrrVf 79 (260)
T 1usu_A 1 GPTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESK-KKKNNIKLYVRRVF 79 (260)
T ss_dssp -CCCCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTCC-----CCEEEEETTEE
T ss_pred CCcCCcccCCcccCCHHHHHHHHHHhcCCccCCeeEEEeeccCcceeEEEEEecCCCchhhhhhh-hccCCeEEEEeeeE
Confidence 78999999999999999999999999999999999999999999999999999999999999853 35799999999999
Q ss_pred eecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhHHhh
Q 004444 434 ISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGISMSENRADYEKFWENFGKYLK 513 (753)
Q Consensus 434 I~d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~l~~kv~~~L~~la~~~d~e~y~~f~~~fg~~lK 513 (753)
|+|+|+ +|||+||+||||||||+|||||||||+||+|+++++|++.|++|++++|.++|+ |+++|++||++||.+||
T Consensus 80 I~d~~~-~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la~--d~e~y~~f~~~fg~~lK 156 (260)
T 1usu_A 80 ITDEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAE--DSEQFEKFYSAFSKNIK 156 (260)
T ss_dssp EESCCT-TSSCGGGTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHH
T ss_pred eccchh-hhchHHHHHheeccccCCcCCccCHHHhcccHHHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHhhhhc
Confidence 999999 999999999999999999999999999999999999999999999999999994 89999999999999999
Q ss_pred hcccCCccChhhccCccceeeccCCCcccCHHHHHhhcCCCCceEEEEecCCHHHHhcChhHHHhhhcCceEEEecCCCc
Q 004444 514 MGCIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAADSVASARNTPFLEKLLEKDLEVLYLVDPID 593 (753)
Q Consensus 514 ~G~~eD~~~~e~l~~LLrF~Ss~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~~~~~~~~sp~~E~~~~kg~eVL~l~dpiD 593 (753)
+|+++|..|+++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|.|+++|||||||+||||
T Consensus 157 ~G~~eD~~n~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~lE~~k~kg~EVL~l~d~iD 236 (260)
T 1usu_A 157 LGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPID 236 (260)
T ss_dssp HHHHHCTTTHHHHHTTCEEEETTEEEEEEEHHHHHHTSCTTCCEEEEEECSSHHHHHTCTTHHHHHHTTCCEEEECSHHH
T ss_pred chhccCHHHHHHHHHhhEeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchH
Confidence 99999999999999999999998666799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcceEecccc
Q 004444 594 EIAVQNLKSYKEKNFVDISKE 614 (753)
Q Consensus 594 E~~l~~L~~y~~~~f~~V~~~ 614 (753)
|+|+++|.+|+|++|++|+++
T Consensus 237 e~~i~~L~e~~gk~~~sv~k~ 257 (260)
T 1usu_A 237 EYAFTQLKEFEGKTLVDITKD 257 (260)
T ss_dssp HHHHHHHCEETTEEEEETTCC
T ss_pred HHHHHHHHhhCCceEEecccc
Confidence 999999999999999999997
No 12
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=100.00 E-value=2.1e-83 Score=669.17 Aligned_cols=260 Identities=44% Similarity=0.831 Sum_probs=232.3
Q ss_pred ccCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCceeeeeecccceeeEEEEEeeCCCCCCCccc-cCCCCcCeEEEeeeE
Q 004444 354 NETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPAVAPMGKDDL-INPKTKNIRLYVKRV 432 (753)
Q Consensus 354 N~~~piW~r~~~~v~~eey~~Fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~-~~~~~~~i~LYv~rV 432 (753)
|+++|||+|+|++||+|||.+|||+++++|++||+|+|+++||+++|+||||||+++||+++.. ....+++|+||||||
T Consensus 1 N~~~plW~r~~~eit~eeY~eFYk~l~~~~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~~~ikLYvrrV 80 (263)
T 1y6z_A 1 GHQLPIWKQDEKSLTENDYYSFYKNTFKAYDDPLAYVHFNVEGQISFNSILYIPGSLPWELSKNMFDEESRGIRLYVKRV 80 (263)
T ss_dssp ----CGGGSCTTSCCHHHHHHHHHHHHTCCSCCSEEEEEEEESSSEEEEEEEECSSCCHHHHHCCC----CCEEEEETTE
T ss_pred CCcCCCcCCCcccCCHHHHHHHHHHhcCCccCcceeEEeccCCccceEEEEEecCCCchhhhhhhhHhhhcCeeEEEeee
Confidence 7889999999999999999999999999999999999999999999999999999999987542 113569999999999
Q ss_pred EeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhHHh
Q 004444 433 FISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGISMSENRADYEKFWENFGKYL 512 (753)
Q Consensus 433 fI~d~~~~dllP~~l~FvkGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~l~~kv~~~L~~la~~~d~e~y~~f~~~fg~~l 512 (753)
||+|+|+ +|||+||+||||||||+|||||||||+||+|+++++|++.|++|++++|+++|+ +|+++|++||++||.+|
T Consensus 81 fI~d~~~-~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkvl~~l~~la~-~d~e~y~kf~~~fg~~l 158 (263)
T 1y6z_A 81 FINDKFS-ESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKSISMMKGLKE-TGGDKWTKFLNTFGKYL 158 (263)
T ss_dssp EEESCGG-GGSCGGGTTCEEEEEECC------------CTTHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHH
T ss_pred Eeecchh-hhchHHHHHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999998 78999999999999999
Q ss_pred hhcccCCccChhhccCccceeeccCCCcccCHHHHHhhcCCCCceEEEEecCCHHHHhcChhHHHhhhcCceEEEecCCC
Q 004444 513 KMGCIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAADSVASARNTPFLEKLLEKDLEVLYLVDPI 592 (753)
Q Consensus 513 K~G~~eD~~~~e~l~~LLrF~Ss~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~~~~~~~~sp~~E~~~~kg~eVL~l~dpi 592 (753)
|+|+++|++|+++|++||||+||+++++++||+||++|||++|+.|||++|++++++++|||+|.++++|+|||+|++||
T Consensus 159 K~G~~eD~~~~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~sp~~E~~~~kg~EVL~l~~~i 238 (263)
T 1y6z_A 159 KIGVVEDKENQEEIASLVEFYSINSGDKKTDLDSYIENMKEDQKCIYYISGENKKTAQNSPSLEKLKALNYDVLFSLEPI 238 (263)
T ss_dssp HHHHHHCGGGHHHHHTTCEECBTTTTTSCEEHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCCEEECSHH
T ss_pred ccccccCHHHHHHHHHhheeeeccCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcCcHHHHHHhCCCeEEEeCCcH
Confidence 99999999999999999999999877789999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHh--hhcCCcceEeccccc
Q 004444 593 DEIAVQNL--KSYKEKNFVDISKED 615 (753)
Q Consensus 593 DE~~l~~L--~~y~~~~f~~V~~~~ 615 (753)
||+||++| ++|+|++|++|++++
T Consensus 239 De~~i~~L~~~e~~gk~~~sv~k~~ 263 (263)
T 1y6z_A 239 DEFCLSSLTVNKYKGYEVLDVNKAD 263 (263)
T ss_dssp HHHHHHHHHHHCBTTBCEEETTCC-
T ss_pred HHHHHHHhhhhccCCceEEecCCCC
Confidence 99999999 599999999999864
No 13
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=100.00 E-value=2.6e-60 Score=498.63 Aligned_cols=258 Identities=50% Similarity=0.835 Sum_probs=224.7
Q ss_pred CCCCCcccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEE
Q 004444 91 PPPPLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITIT 170 (753)
Q Consensus 91 ~~~~~e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~ 170 (753)
+....+++.||+|+++||+||+++||||+++|||||||||+||++++||+++++|+++...+.+.|+|.+|+++++|+|.
T Consensus 19 ~~~~~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~ 98 (281)
T 3peh_A 19 PTESMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSIT 98 (281)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEE
T ss_pred HhhccceeeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEE
Confidence 44567999999999999999999999999999999999999999999999999999888888899999999999999999
Q ss_pred eCCCCCCHHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCC
Q 004444 171 DSGIGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEAN 250 (753)
Q Consensus 171 DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~ 250 (753)
|||+|||+++|.++|++||+||++.|+++++.+. .+..+||||||||||+||||++|+|+|++. ++.++.|+++++
T Consensus 99 DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~---~d~~~IGqFGVGFySaf~vadkV~V~Sk~~-~~~~~~Wes~g~ 174 (281)
T 3peh_A 99 DTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSG---GDMSLIGQFGVGFYSAFLVADKVIVYTKNN-DDEQYIWESTAD 174 (281)
T ss_dssp ECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTT---CCSTTTTTTTCGGGGGGGTEEEEEEEEECT-TSCCEEEEEETT
T ss_pred eCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccc---cccccccccCccchhhccccCEEEEEEecC-CCCEEEEEECCC
Confidence 9999999999999999999999999999987521 567899999999999999999999999995 467999999998
Q ss_pred CCceEEEecCCCCCCCCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEeccccccccccCCCCcccccc---
Q 004444 251 ASSYTIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAETNK--- 327 (753)
Q Consensus 251 ~~~y~i~~~~~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~--- 327 (753)
+.|+|.+++.+ ...++||+|+|||++++.+|+++++|+++|++||+||+|||+++.+++.+++++++++++++..
T Consensus 175 -g~fti~~~~~~-~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l~~~k~~~~ev~~~~~~~~~~~~~~ 252 (281)
T 3peh_A 175 -AKFTIYKDPRG-ATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLADIAKDMVNDPNY 252 (281)
T ss_dssp -SCEEEEECTTC-STTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEEEEEEEEEEEEEHHHHHHHTTCTTS
T ss_pred -ccEEEEEcCCC-CCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEEeeeeeeeeccCcchhhhccccccc
Confidence 99999987543 3568999999999999999999999999999999999999999999988888877653321110
Q ss_pred --cchhhHHHhhhcccceeeeeccccccc
Q 004444 328 --DKQDETAEKKKKTKTVVERYWDWELTN 354 (753)
Q Consensus 328 --~~~~~~~~~~~~~~~~~~~~~~~e~iN 354 (753)
.++.+++++++|+|++++++++|+.+|
T Consensus 253 ~~~e~~~~~~~~~k~k~~~~~~~~~e~~n 281 (281)
T 3peh_A 253 DSVKVEETDDPNKKTRTVEKKVKKWTLMN 281 (281)
T ss_dssp SEEEECCCCCTTCCEEEEEEEEEEEEECC
T ss_pred cccccccccccccCCcceEEEEEEeEecC
Confidence 001111134556788899999999998
No 14
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=100.00 E-value=2.7e-56 Score=458.97 Aligned_cols=207 Identities=51% Similarity=0.862 Sum_probs=187.5
Q ss_pred CCcccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCccc-------------------------
Q 004444 94 PLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELL------------------------- 148 (753)
Q Consensus 94 ~~e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~------------------------- 148 (753)
+.|++.||+|+++||+||+++||||++||||||||||+|||+|+| +++++|.++
T Consensus 23 ~~e~~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (272)
T 3ied_A 23 PVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKR-IILENNKLIKDAEVVTNEEIKNETEKEKTENVNE 101 (272)
T ss_dssp ECEEEECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC--------------------
T ss_pred ccceechHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHH-HhccChhhhhcccccccccccccccccccccccc
Confidence 468999999999999999999999999999999999999999999 877765433
Q ss_pred ------------CCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccc
Q 004444 149 ------------KDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQF 216 (753)
Q Consensus 149 ------------~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqF 216 (753)
....++.|+|.+|+++++|+|.|||+|||++||.++|++||+||++.|+++++.++ .+..+||||
T Consensus 102 ~~~~~~~~~e~~~~~~~l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~---~d~~~IGqF 178 (272)
T 3ied_A 102 STDKKENVEEEKNDIKKLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGK---ADSNLIGQF 178 (272)
T ss_dssp ------------CGGGGCCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTS---SCTTCGGGS
T ss_pred ccccccccccccCCCCCcEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhccc---ccccccCcc
Confidence 23356799999999999999999999999999999999999999999999987642 467899999
Q ss_pred cchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecC-----CCCCCCCCccEEEEEecCCCcCCCCHHHHHH
Q 004444 217 GVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREET-----NPEKLLPRGTRLTLYLKHDDKGFAHPERIQK 291 (753)
Q Consensus 217 GIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~-----~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~ 291 (753)
||||||+||||++|+|+|+ +++.++.|+|+++ ++|+|.+++ .+ +..++||+|+|||++++.+|+++++|++
T Consensus 179 GVGFySaFmVAdkV~V~Sk--~dd~~~~WeS~g~-gsfti~~~~~~~~~~g-~~~~~GT~I~L~Lked~~e~le~~~ik~ 254 (272)
T 3ied_A 179 GVGFYSSFLVSNRVEVYTK--KEDQIYRWSSDLK-GSFSVNEIKKYDQEYD-DIKGSGTKIILHLKEECDEYLEDYKLKE 254 (272)
T ss_dssp CCGGGGGGGTEEEEEEEEE--SSSCEEEEEECSS-SEEEEEECTTCTTCC---CCSSEEEEEEEECGGGGGGGSHHHHHH
T ss_pred cceeheeeccCCEEEEEEc--CCCceEEEEECCC-CCEEEEECcccccccC-CCCCCCcEEEEEECCChHHhcCHHHHHH
Confidence 9999999999999999999 3677999999999 999999875 22 3568999999999999999999999999
Q ss_pred HHHHhcCCCCcCeEEec
Q 004444 292 LVKNYSQFVSFPIYTWQ 308 (753)
Q Consensus 292 lik~ys~fl~~PI~~~~ 308 (753)
+|++||+||+|||++|.
T Consensus 255 likkys~fi~~PI~l~~ 271 (272)
T 3ied_A 255 LIKKYSEFIKFPIEIWS 271 (272)
T ss_dssp HHHHHCTTCCSCEEECC
T ss_pred HHHHHHhCCCCCeEEEe
Confidence 99999999999999975
No 15
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=100.00 E-value=7.4e-55 Score=448.97 Aligned_cols=210 Identities=48% Similarity=0.840 Sum_probs=195.6
Q ss_pred CCcccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCC
Q 004444 94 PLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSG 173 (753)
Q Consensus 94 ~~e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 173 (753)
+.+++.||+|+++||+||+++||||+++|||||||||+||++++||.+++++..+....+++|+|.+|+++++|+|.|||
T Consensus 15 ~~e~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnG 94 (239)
T 3nmq_A 15 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTG 94 (239)
T ss_dssp CCEEEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cceeEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCC
Confidence 46899999999999999999999999999999999999999999999999998777778899999999999999999999
Q ss_pred CCCCHHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCc
Q 004444 174 IGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASS 253 (753)
Q Consensus 174 iGMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~ 253 (753)
+|||++||.++|++||+||++.|+++++.+ .+...||||||||||+|||||+|+|.|++ .++.++.|+|+++ +.
T Consensus 95 iGMt~edL~~~LgtIA~Sgtk~f~e~~~~~----~d~~~IGqFGvGfySaf~vadkv~V~Sk~-~~~~~~~W~s~~~-g~ 168 (239)
T 3nmq_A 95 IGMTKADLINNLGTIAKSGTKAFMEALQAG----ADISMIGQFGVGFYSAYLVAEKVVVITKH-NDDEQYAWESSAG-GS 168 (239)
T ss_dssp CCCCHHHHHTHHHHHHHHHHHHHHHHHHTT----CCGGGGGGGTCGGGGGGGTEEEEEEEEEC-TTSCCEEEEECST-TE
T ss_pred CCCCHHHHHHHHHHHhcccchhhhhhhccc----CCcccccccCcccccccccCCEEEEEEee-CCCceeEEEECCC-Cc
Confidence 999999999999999999999999998753 46789999999999999999999999998 4667999999998 99
Q ss_pred eEEEecCCCCCCCCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEecccc
Q 004444 254 YTIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKG 311 (753)
Q Consensus 254 y~i~~~~~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~~~~ 311 (753)
|+|++.+. +..++||+|+|||++++.+|+++++|+++|++||+||+|||+++.+++
T Consensus 169 fti~~~~~--~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~~~~~~~ 224 (239)
T 3nmq_A 169 FTVRADHG--EPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKE 224 (239)
T ss_dssp EEEEECCS--SCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEECCCSC
T ss_pred EEEEecCC--CcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceEEeeeee
Confidence 99998753 356899999999999999999999999999999999999999987653
No 16
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=100.00 E-value=1.6e-54 Score=455.63 Aligned_cols=257 Identities=48% Similarity=0.845 Sum_probs=202.8
Q ss_pred CCcccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCC
Q 004444 94 PLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSG 173 (753)
Q Consensus 94 ~~e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 173 (753)
..+++.||+++++||+||+++||+|+++|||||||||+||++++||+++++++.+...+.+.|+|.+|....+|+|.|||
T Consensus 4 ~~e~~~Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnG 83 (269)
T 1qy5_A 4 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTG 83 (269)
T ss_dssp CEEEECCCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cccceeehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECC
Confidence 45899999999999999999999999999999999999999999999999998877778899999999889999999999
Q ss_pred CCCCHHHHHHHHhHhhhcchhhHHHHhhcccc-CCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCC
Q 004444 174 IGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKD-AGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANAS 252 (753)
Q Consensus 174 iGMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~-~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~ 252 (753)
+|||+++|.++|++||+||++.|+++++.+.+ ...+...||||||||||+||||++|+|.|++.+ +.++.|++++ |
T Consensus 84 iGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~-~~~~~w~s~g--g 160 (269)
T 1qy5_A 84 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNN-DTQHIWESDS--N 160 (269)
T ss_dssp CCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTT-SCCEEEEECS--S
T ss_pred CCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecC-CcEEEEEEeC--C
Confidence 99999999999999999999999988864200 003567899999999999999999999999954 5789999977 7
Q ss_pred ceEEEecCCCCCCCCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEeccccccccccCCCCcccccc--cc-
Q 004444 253 SYTIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAETNK--DK- 329 (753)
Q Consensus 253 ~y~i~~~~~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~--~~- 329 (753)
.|+|.+...+ ...++||+|+|||+++..+|++.++|+++|++||+||+|||+++++++.+++++++++++++.. ++
T Consensus 161 ~~~i~~~~~~-~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~~ 239 (269)
T 1qy5_A 161 EFSVIADPRG-NTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEEKEDSD 239 (269)
T ss_dssp CEEEEECTTC-SCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEEEEEECC---------------------
T ss_pred EEEEEeccCC-CcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeEEeeeeeeeeccCccchhhhhhcccccc
Confidence 8999876532 2458999999999999999999999999999999999999999999888777766553321100 00
Q ss_pred -----hhhHHHhhhcccceeeeeccccccc
Q 004444 330 -----QDETAEKKKKTKTVVERYWDWELTN 354 (753)
Q Consensus 330 -----~~~~~~~~~~~~~~~~~~~~~e~iN 354 (753)
+++++++++|+|++++.+++|+.+|
T Consensus 240 ~~~~~~~~~~~~~~k~k~~~~~~~~~e~~n 269 (269)
T 1qy5_A 240 DEAAVEEEEEEKKPKTKKVEKTVWDWELMN 269 (269)
T ss_dssp --------------------CCCEEEEECC
T ss_pred cccccccccccccccCCceEEEEeeeEecC
Confidence 0011223466778889999999998
No 17
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=100.00 E-value=6.2e-50 Score=416.18 Aligned_cols=219 Identities=48% Similarity=0.825 Sum_probs=193.3
Q ss_pred CCCcccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeC
Q 004444 93 PPLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDS 172 (753)
Q Consensus 93 ~~~e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~Dn 172 (753)
...+++.||+|+++|+++|+++||+|+++|||||||||+||++++||.+++++..+....++.|+|.+|...++|+|.||
T Consensus 35 ~~~e~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~Dn 114 (256)
T 3o0i_A 35 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDT 114 (256)
T ss_dssp -CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccceeEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecC
Confidence 35689999999999999999999999999999999999999999999999999877777889999999998999999999
Q ss_pred CCCCCHHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCC
Q 004444 173 GIGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANAS 252 (753)
Q Consensus 173 GiGMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~ 252 (753)
|+|||++||..+|++||.||++.|.+.++.+ .+...|||||+||||+|+||++|+|.|++. ++.++.|+++++ +
T Consensus 115 G~GMt~edl~~~l~~ia~S~~~~f~~~L~~~----~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~-~~~g~~w~s~gg-~ 188 (256)
T 3o0i_A 115 GIGMTKADLINNLGTIAKSGTKAFMEALQAG----ADISMIGQFGVGFYSAYLVAEKVTVITKHN-DDEQYAWESSAG-G 188 (256)
T ss_dssp SCCCCHHHHHTHHHHHHHHHHHHHHHHHHTT----CCGGGGGGGTCGGGGGGGTEEEEEEEEECT-TSCEEEEEECST-T
T ss_pred CCCcCHHHHHHHHHhhccccccchhhhhccc----CCccccCCCcchHHHhhccCCeEEEEEcCC-CCceEEEEEecc-c
Confidence 9999999999999999999999998888643 467899999999999999999999999984 567999999998 9
Q ss_pred ceEEEecCCCCCCCCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEeccccccccccCC
Q 004444 253 SYTIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVD 319 (753)
Q Consensus 253 ~y~i~~~~~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~~~~~~~~~~~~ 319 (753)
.|+|.+.+. ...++||+|+|+||.+..+|++.++|+++|++||+||++||+++.+++.+++++++
T Consensus 189 ~~~v~~~~~--~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~~~~~~~~~~~~~~~ 253 (256)
T 3o0i_A 189 SFTVRTDTG--EPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDD 253 (256)
T ss_dssp EEEEEECCS--SCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEEECCC----------
T ss_pred eEEEeeCCC--CCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeEEeeeeeecccCCCc
Confidence 999998642 24689999999999999999999999999999999999999999988776666653
No 18
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=100.00 E-value=1.1e-48 Score=402.31 Aligned_cols=218 Identities=48% Similarity=0.822 Sum_probs=191.7
Q ss_pred CCCcccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeC
Q 004444 93 PPLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDS 172 (753)
Q Consensus 93 ~~~e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~Dn 172 (753)
...+++.||+|+++|+++|+++||+++++|||||||||+||++++|+.+++++......+.+.|+|.+|....+|+|.||
T Consensus 7 ~~~~~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~Dn 86 (228)
T 3t0h_A 7 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDT 86 (228)
T ss_dssp -CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccccceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeC
Confidence 45689999999999999999999999999999999999999999999999998877677788999999988999999999
Q ss_pred CCCCCHHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCC
Q 004444 173 GIGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANAS 252 (753)
Q Consensus 173 GiGMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~ 252 (753)
|+||+++||..+|++||.|+++.|.+.++.+ .+...||+||+||+|+|+||++|+|.|++. ++.++.|+++++ +
T Consensus 87 G~GMs~edl~~~l~~ia~S~~~~f~~~l~~~----~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~-~~~~~~w~~~g~-~ 160 (228)
T 3t0h_A 87 GIGMTKADLINNLGTIAKSGTKAFMEALQAG----ADISMIGQFGVGFYSAYLVAEKVTVITKHN-DDEQYAWESSAG-G 160 (228)
T ss_dssp SCCCCHHHHHTGGGSCHHHHHHHHHHHHHTT----CCGGGGGGGTCGGGGGGGTEEEEEEEEECT-TSCEEEEEECST-T
T ss_pred CCCCCHHHHHHHHHhhccccchhhhhhhccc----CCcccCCCCChhHHHHhccCCEEEEEEecC-CCCcEEEEEcCC-c
Confidence 9999999999999999999999998877642 456899999999999999999999999984 467999999998 8
Q ss_pred ceEEEecCCCCCCCCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEeccccccccccC
Q 004444 253 SYTIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEV 318 (753)
Q Consensus 253 ~y~i~~~~~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~~~~~~~~~~~ 318 (753)
.|++.+.+. ...++||+|+|+||++..+|++.++|+++|++||+||++||+++.+++.++++++
T Consensus 161 ~~~v~~~~~--~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~~~~~~~~~~~~~~ 224 (228)
T 3t0h_A 161 SFTVRTDTG--EPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSD 224 (228)
T ss_dssp EEEEEECCS--SCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEEECCC---------
T ss_pred eEEEeecCC--CCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeEEeecceeeccCCC
Confidence 999998642 2468999999999999999999999999999999999999999988766665554
No 19
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=100.00 E-value=5.9e-48 Score=399.60 Aligned_cols=213 Identities=49% Similarity=0.879 Sum_probs=176.2
Q ss_pred CCcccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCC
Q 004444 94 PLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSG 173 (753)
Q Consensus 94 ~~e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 173 (753)
..+++.||+++++|+++|+++||+++++|||||||||+||++++|+..++++++.....++.|+|.++....+|+|.|||
T Consensus 8 ~~~~~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG 87 (236)
T 2gqp_A 8 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTG 87 (236)
T ss_dssp TTTEECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cccccchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEECC
Confidence 45899999999999999999999999999999999999999999999999988777777889999999888999999999
Q ss_pred CCCCHHHHHHHHhHhhhcchhhHHHHhhcccc-CCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCC
Q 004444 174 IGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKD-AGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANAS 252 (753)
Q Consensus 174 iGMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~-~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~ 252 (753)
+||+++||.++|++||.||++.|+++++...+ ...+...||+|||||||+||+|++|+|.|++.+ +.++.|++++ +
T Consensus 88 ~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~-~~~~~w~~~g--g 164 (236)
T 2gqp_A 88 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNN-DTQHIWESDS--N 164 (236)
T ss_dssp CCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTT-SCCEEEEESS--S
T ss_pred cCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCC-CceEEEEEeC--C
Confidence 99999999999999999999999887764200 003557899999999999999999999999954 4689999976 6
Q ss_pred ceEEEecCCCCCCCCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEeccc
Q 004444 253 SYTIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEK 310 (753)
Q Consensus 253 ~y~i~~~~~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~~~ 310 (753)
.|++.+.+.+ ...++||+|+|+|+++..+|++.++|+++|++||+|++|||++++++
T Consensus 165 ~~~i~~~~~~-~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~~~~~~ 221 (236)
T 2gqp_A 165 EFSVIADPRG-NTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK 221 (236)
T ss_dssp CEEEEECTTC-SCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEEEEEEC
T ss_pred EEEEEeccCC-CCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceEEeeee
Confidence 8999876522 23579999999999999999999999999999999999999998754
No 20
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=100.00 E-value=1.2e-44 Score=371.21 Aligned_cols=211 Identities=48% Similarity=0.812 Sum_probs=190.6
Q ss_pred CcccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCC
Q 004444 95 LEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGI 174 (753)
Q Consensus 95 ~e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 174 (753)
.+++.||+++++|+++|+++||+++++|||||||||+||++++|+..++++......+.+.|+|..+.+..+|+|.|||+
T Consensus 3 ~~~~~f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~ 82 (220)
T 2wer_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (220)
T ss_dssp CEEEECCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred CcceeeeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCC
Confidence 48999999999999999999999999999999999999999999999998887766778889998887788999999999
Q ss_pred CCCHHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCce
Q 004444 175 GMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSY 254 (753)
Q Consensus 175 GMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y 254 (753)
||++++|..+|++||.||++.|+++++.. .+...||+|||||||+|++|++|+|.|++. ++.++.|+++++ +.|
T Consensus 83 GMs~edl~~~l~~ia~S~~~~f~~k~~~~----~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~-~~~~~~~~~~~~-~~~ 156 (220)
T 2wer_A 83 GMTKAELINNLGTIAKSGTKAFMEALSAG----ADVSMIGQFGVGFYSLFLVADRVQVISKSN-DDEQYIWESNAG-GSF 156 (220)
T ss_dssp CCCHHHHHHHTTTSCCTTHHHHHHHHTTT----CCGGGGGGGTCGGGGGGGTEEEEEEEEECT-TSCCEEEEECSS-SEE
T ss_pred CCCHHHHHHHHHhHhcccchhHHHHhhcc----CCcccCCccchhHHHhhhcCCeeEEEEecC-CCceeEEEeCCC-Cce
Confidence 99999999999999999999998888643 466899999999999999999999999985 456899999988 899
Q ss_pred EEEecCCCCCCCCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEeccccc
Q 004444 255 TIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGY 312 (753)
Q Consensus 255 ~i~~~~~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~~~~~ 312 (753)
++.+.+.+ ...++||+|+|+|++++.+|++.++|+++|++|++|+++||+++.+++.
T Consensus 157 ~i~~~~~~-~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~~~~~~~~ 213 (220)
T 2wer_A 157 TVTLDEVN-ERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEV 213 (220)
T ss_dssp EEEECSSS-CCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEEECCCCCC
T ss_pred EeecccCC-CCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 99876411 2357999999999999999999999999999999999999999986533
No 21
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=100.00 E-value=8.2e-45 Score=381.24 Aligned_cols=214 Identities=49% Similarity=0.835 Sum_probs=190.5
Q ss_pred CCcccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCC
Q 004444 94 PLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSG 173 (753)
Q Consensus 94 ~~e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 173 (753)
..+++.||+++++|+++|+++||+++.+|||||||||+||++++|+..+++++.......+.|.|..+....+|+|.|||
T Consensus 44 ~~e~~~F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG 123 (264)
T 1yc1_A 44 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTG 123 (264)
T ss_dssp CEEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECS
T ss_pred cceeEEehHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECC
Confidence 45899999999999999999999999999999999999999999999998888776677888999888888899999999
Q ss_pred CCCCHHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCc
Q 004444 174 IGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASS 253 (753)
Q Consensus 174 iGMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~ 253 (753)
+||+++||..+|++||.||++.|+++++.. .+...||+|||||||+|++|++|+|.|++.+ +.++.|+++++ +.
T Consensus 124 ~GMs~edL~~~l~~ia~S~~~~f~~~l~~~----~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~-~~~~~w~~~~~-~~ 197 (264)
T 1yc1_A 124 IGMTKADLINNLGTIAKSGTKAFMEALQAG----ADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAG-GS 197 (264)
T ss_dssp CCCCHHHHHHHHHSCTTSCHHHHHHHHHTT----CCGGGGGGGTCGGGGHHHHEEEEEEEEECTT-SCCEEEEECST-TE
T ss_pred cCCCHHHHHHHHHhhccccchhhhhhhccc----cchhhcCCCCCCccccccCCCEEEEEEecCC-CceEEEEEcCC-ce
Confidence 999999999999999999999998888643 4668999999999999999999999999954 56899999988 89
Q ss_pred eEEEecCCCCCCCCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEecccccccc
Q 004444 254 YTIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKE 315 (753)
Q Consensus 254 y~i~~~~~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~~~~~~~~ 315 (753)
|++.+.+. ...++||+|+|+|+++..+|++.++|+++|++||+||+|||+++++++.+++
T Consensus 198 ~~i~~~~~--~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~~~~~~~~~~~ 257 (264)
T 1yc1_A 198 FTVRTDTG--EPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKE 257 (264)
T ss_dssp EEEEECCS--SCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEEECCCC-----
T ss_pred EEEeecCC--CCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEEEeeccccccc
Confidence 99987642 2357999999999999889999999999999999999999999987654333
No 22
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=100.00 E-value=1.1e-40 Score=344.92 Aligned_cols=208 Identities=43% Similarity=0.763 Sum_probs=185.1
Q ss_pred CCcccchhhhHHHHHHHHHhcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCC
Q 004444 94 PLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSG 173 (753)
Q Consensus 94 ~~e~~~Fq~d~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 173 (753)
..|++.|++++++|+++|+++||+++.+|||||||||+||++++|+..+.++.+......+.|.|.++.....|+|.|||
T Consensus 23 ~~e~~~f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG 102 (235)
T 2ior_A 23 GQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNG 102 (235)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred ccccEEeehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEECC
Confidence 45899999999999999999999999999999999999999999999998887766677788999988888899999999
Q ss_pred CCCCHHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCC--CCcEEEEeeCCC
Q 004444 174 IGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKS--DKQYVWEGEANA 251 (753)
Q Consensus 174 iGMt~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~--~~~~~w~s~~~~ 251 (753)
+||+++||..+|++||.|+++.|.+.++... ..+...+|+|||||||+|++|++|+|.|++.+. ..++.|+++++
T Consensus 103 ~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~--~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~- 179 (235)
T 2ior_A 103 VGMTRDEVIDHLGTIAKSGTKSFLESLGSDQ--AKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGE- 179 (235)
T ss_dssp SCCCHHHHHHHHTTCCCTTHHHHHHHCCSCH--HHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSS-
T ss_pred CCCCHHHHHHHHHHHccccccchhhhhcccc--ccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCC-
Confidence 9999999999999999999999887654110 023468999999999999999999999999655 55899999987
Q ss_pred CceEEEecCCCCCCCCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCCCCcCeEEec
Q 004444 252 SSYTIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQ 308 (753)
Q Consensus 252 ~~y~i~~~~~~~~~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~fl~~PI~~~~ 308 (753)
+.|++.+.. ..++||+|+|+|+++..+|++.++|+++|++|++||++||+++.
T Consensus 180 ~~~~i~~~~----~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~~~~ 232 (235)
T 2ior_A 180 GEYTVADIT----KEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEK 232 (235)
T ss_dssp SEEEEEEEC----CCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEEEC-
T ss_pred CcEEEeeCC----CCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeEecc
Confidence 899998753 24799999999999999999999999999999999999999975
No 23
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=99.96 E-value=1.6e-30 Score=243.38 Aligned_cols=110 Identities=25% Similarity=0.430 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhCCceeEEEEeecCCCCCeEEEecCCCchHHHHHHHHHhccCCCCccccccCceeEEECCCChHHHHHHh
Q 004444 634 GQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNA 713 (753)
Q Consensus 634 ~~L~~~lk~~L~~kV~~V~vS~rL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLIk~L~~ 713 (753)
..+++|+|++|+++|.+|++|+||++||||||++++|||++|||||++|+++ ++..+++|||||+||||++|.+
T Consensus 11 ~~~~~~~K~~L~dkV~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~~------~~~~k~~LEINp~HplIk~L~~ 84 (126)
T 1sf8_A 11 GSFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQK------VPEVKYIFELNPDHVLVKRAAD 84 (126)
T ss_dssp -CHHHHHHHHHGGGSSEEEECCCCSSCCEEEECCTTSCCHHHHHHHHTTTSC------CCCCCCEEEECTTSHHHHHHHH
T ss_pred hHHHHHHHHHhcCcccEEEEeecccCCCEEEEecCcccCHHHHHHHHHhccc------cccCCeeeeECCCCHHHHHHHH
Confidence 3589999999999999999999999999999999999999999999998542 3457899999999999999976
Q ss_pred hhcCCCCchhHHHHHHHHHHHHHHhCCCCCccHHHHHhhC
Q 004444 714 ASKNCPDDNDALRVVDLLYDAALVSSGFTVKSGRAWQQDI 753 (753)
Q Consensus 714 ~~~~~~~d~~~~~l~~~Lyd~AlL~~G~~~edp~~fa~ri 753 (753)
. .+++.++++|++|||+|+|++||.++||+.|++||
T Consensus 85 ~----~~~~~~k~l~~lLyd~AlL~~G~~leDp~~F~~Ri 120 (126)
T 1sf8_A 85 T----EDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRM 120 (126)
T ss_dssp C----CSHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHH
T ss_pred h----cChHHHHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3 25678999999999999999999999999999985
No 24
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.72 E-value=1.1e-17 Score=181.40 Aligned_cols=154 Identities=21% Similarity=0.321 Sum_probs=109.6
Q ss_pred hcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCC-CcEEEEEeCCCCCCHHHHHHHHhHhhhc
Q 004444 113 NSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKD-NGIITITDSGIGMTQQDLVDCLGTIAQS 191 (753)
Q Consensus 113 ~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~el~~~l~tIa~S 191 (753)
-....++..+|+|||+||+||.+ . .|.|.++.+ ...|+|.|||+||+.+++...+...+.|
T Consensus 19 gevi~~~~~~v~ELi~NaidA~a----------------~--~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 80 (333)
T 1b63_A 19 GEVVERPASVVKELVENSLDAGA----------------T--RIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATS 80 (333)
T ss_dssp HHHCSSHHHHHHHHHHHHHHTTC----------------S--EEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCS
T ss_pred CCchhCHHHHHHHHHHHHHHCCC----------------C--eEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhccccc
Confidence 33567899999999999999973 1 455555443 3689999999999999999988888766
Q ss_pred chhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCC-ceEEEecCCCCCCCCCcc
Q 004444 192 GTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANAS-SYTIREETNPEKLLPRGT 270 (753)
Q Consensus 192 g~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~-~y~i~~~~~~~~~~~~GT 270 (753)
....+ +.+ .....+|++|+|++|+++++ +++|+|+..++..+|.|..+|. . ...+.+.. .++||
T Consensus 81 K~~~~-~d~-------~~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~~~~g~-~~~~~~~~~~-----~~~GT 145 (333)
T 1b63_A 81 KIASL-DDL-------EAIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQAYAEGR-DMNVTVKPAA-----HPVGT 145 (333)
T ss_dssp SCCSH-HHH-------HTCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETT-TTEEEEEEEC-----CCSEE
T ss_pred Ccccc-chh-------hhccccCccccchhhhhcCC-cEEEEEecCCCceEEEEEEcCC-cceEeeeccc-----CCCCC
Confidence 32221 111 12356899999999999999 8999999855455777877665 3 44444432 47999
Q ss_pred EEEEE-ecCC---CcCCCC-----HHHHHHHHHHhcCC
Q 004444 271 RLTLY-LKHD---DKGFAH-----PERIQKLVKNYSQF 299 (753)
Q Consensus 271 ~I~L~-Lk~~---~~~~~~-----~~~i~~lik~ys~f 299 (753)
+|+++ |-.. ...|+. -.+|.+++++|+-.
T Consensus 146 ~V~v~~Lf~n~P~r~kflk~~~~e~~~i~~~~~~~al~ 183 (333)
T 1b63_A 146 TLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALA 183 (333)
T ss_dssp EEEEESTTTTCHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecccccchhhhhhhccHHHHHHHHHHHHHHHhcc
Confidence 99998 2211 112322 26788999999853
No 25
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.53 E-value=3e-14 Score=156.04 Aligned_cols=166 Identities=17% Similarity=0.212 Sum_probs=102.5
Q ss_pred HHHHHHHHHhcCCC-----CchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcC-CCcEEEEEeCCCCCC
Q 004444 104 VSRLMDLIVNSLYS-----NKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDK-DNGIITITDSGIGMT 177 (753)
Q Consensus 104 ~~~ll~ll~~~LYs-----~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~-~~~~l~I~DnGiGMt 177 (753)
++.|-+.+++.+.+ ++..+|+|||.||+||.. . .|.|.+.. ....|+|.|||.||+
T Consensus 15 I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a----------------~--~I~I~i~~~~~~~I~V~DnG~Gi~ 76 (365)
T 1h7s_A 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGA----------------T--NIDLKLKDYGVDLIEVSDNGCGVE 76 (365)
T ss_dssp --------------CEEECCHHHHHHHHHHHHHHTTC----------------S--EEEEEEEGGGTSEEEEEECSCCCC
T ss_pred hccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCC----------------C--EEEEEEEeCCcEEEEEEECCCCcC
Confidence 44455555555555 568899999999999852 2 45555433 346899999999999
Q ss_pred HHHHHHHHhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEE
Q 004444 178 QQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIR 257 (753)
Q Consensus 178 ~~el~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~ 257 (753)
.+++...+...+.|.... ..+. ......|++|+|++|++++| +++|+|++.+...++.|+.+++ |.+...
T Consensus 77 ~~~l~~~f~~~~tsK~~~----~~dl----~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~-G~~~~~ 146 (365)
T 1h7s_A 77 EENFEGLTLKHHTSKIQE----FADL----TQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHN-GKIIQK 146 (365)
T ss_dssp GGGSGGGGC--------------CCT----TCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTT-SCEEEE
T ss_pred HHHHHHHhhhcccccccc----ccch----hcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCC-CceEee
Confidence 999998777766552211 0000 11234799999999999999 9999999965556899998755 665543
Q ss_pred ecCCCCCCCCCccEEEEE-ecCCCc----CCC-----CHHHHHHHHHHhcCCCC
Q 004444 258 EETNPEKLLPRGTRLTLY-LKHDDK----GFA-----HPERIQKLVKNYSQFVS 301 (753)
Q Consensus 258 ~~~~~~~~~~~GT~I~L~-Lk~~~~----~~~-----~~~~i~~lik~ys~fl~ 301 (753)
... ..++||+|+++ |-.... +|+ +..+|.+++++|+-.-+
T Consensus 147 ~~~----~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p 196 (365)
T 1h7s_A 147 TPY----PRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISA 196 (365)
T ss_dssp EEC----CCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCT
T ss_pred ccc----CCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcCC
Confidence 221 24799999998 432210 122 23678889999987643
No 26
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.6e-13 Score=150.23 Aligned_cols=151 Identities=17% Similarity=0.156 Sum_probs=101.6
Q ss_pred hcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEc-CCCcEEEEEeCCCCCCHHHHHHHHhHhhhc
Q 004444 113 NSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTD-KDNGIITITDSGIGMTQQDLVDCLGTIAQS 191 (753)
Q Consensus 113 ~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~~el~~~l~tIa~S 191 (753)
.....++..+|.|||.||.||.+ . .|.|.+. .....|+|.|||.||+.+++...+..- ..
T Consensus 20 gevi~~~~~vv~eLv~NaiDA~a----------------~--~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~-~t 80 (367)
T 3h4l_A 20 GQVITDLTTAVKELVDNSIDANA----------------N--QIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKH-YT 80 (367)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTTC----------------S--EEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCE-EC
T ss_pred CCcccCHHHHHHHHHHHHHHCCC----------------C--EEEEEEEeCCEEEEEEEECCCCcChhHhccceecc-cc
Confidence 33566788999999999999962 2 4555553 334689999999999999987532111 11
Q ss_pred chhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCccE
Q 004444 192 GTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTR 271 (753)
Q Consensus 192 g~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT~ 271 (753)
++. ....+. ......|.+|+|++|+++|| +++|+|++.+ ..++.|+.+++ |.+...... ..++||+
T Consensus 81 sK~---~~~~Dl----~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~-~~~~~~~~~~~-G~~~~~~~~----~~~~GTt 146 (367)
T 3h4l_A 81 SKI---AKFQDV----AKVQTLGFRGEALSSLCGIA-KLSVITTTSP-PKADKLEYDMV-GHITSKTTT----SRNKGTT 146 (367)
T ss_dssp ----------------CCCCEEEETTHHHHHHHHSS-EEEEEEESST-TCEEEEEECTT-CCEEEEEEE----CCSSEEE
T ss_pred CcC---Cchhhh----hhhhccCccchHHHHhhccC-EEEEEEEECC-CCEEEEEEcCC-CcEEeeccc----cCCCCeE
Confidence 111 011100 12345789999999999999 7999999855 67899998755 665432211 2479999
Q ss_pred EEEE-------------ecCCCcCCCCHHHHHHHHHHhcCC
Q 004444 272 LTLY-------------LKHDDKGFAHPERIQKLVKNYSQF 299 (753)
Q Consensus 272 I~L~-------------Lk~~~~~~~~~~~i~~lik~ys~f 299 (753)
|++. ++.... +-.+|.+++++|+-.
T Consensus 147 V~v~~LF~n~P~R~k~flk~~~~---e~~~i~~~l~~~Al~ 184 (367)
T 3h4l_A 147 VLVSQLFHNLPVRQKEFSKTFKR---QFTKCLTVIQGYAII 184 (367)
T ss_dssp EEEESTTTTCHHHHHHHHTTHHH---HHHHHHHHHHHHHHH
T ss_pred EEEchhhccCchhhhhhccchHH---HHHHHHHHHHHHHhh
Confidence 9994 343322 236889999999765
No 27
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.38 E-value=1.8e-12 Score=140.87 Aligned_cols=156 Identities=21% Similarity=0.255 Sum_probs=100.8
Q ss_pred HHHHHH-hcCCCCchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCC-CcEEEEEeCCCCCCHHHHHHH
Q 004444 107 LMDLIV-NSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKD-NGIITITDSGIGMTQQDLVDC 184 (753)
Q Consensus 107 ll~ll~-~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~el~~~ 184 (753)
+.+.|. .....++...|.|||.||.||.. . .|.|.++.+ ...|+|.|||.||+.+++...
T Consensus 16 ~~~~Iaagevi~~~~~vv~eLv~NAidA~a----------------~--~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~ 77 (348)
T 3na3_A 16 VVNRIAAGEVIQRPANAIKEMIENCLDAKS----------------T--SIQVIVKEGGLKLIQIQDNGTGIRKEDLDIV 77 (348)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHTTC----------------S--EEEEEEEGGGTSEEEEEECSCCCCGGGGGTT
T ss_pred HHHhhcccCcccCHHHHHHHHHHHHHHcCC----------------C--EEEEEEEeCCEEEEEEEECCcCcChHHhhhh
Confidence 344443 33556889999999999999952 2 455554433 346999999999999998753
Q ss_pred HhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCce--EEEecCCC
Q 004444 185 LGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSY--TIREETNP 262 (753)
Q Consensus 185 l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y--~i~~~~~~ 262 (753)
+ .-...++- ....|. ......|.+|+|+.|...|| +++|+|+..++..++.|...++ .. .+.+..
T Consensus 78 ~-~~~~tsK~------~~~~dl-~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G--~~~~~~~~~~-- 144 (348)
T 3na3_A 78 C-ERFTTSKL------QSFEDL-ASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDG--KLKAPPKPCA-- 144 (348)
T ss_dssp T-STTCCSSC------CCC----------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETT--EESSCCEEEC--
T ss_pred h-cccccccc------Ccchhh-hccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCC--EEeeeeeEec--
Confidence 2 22122221 100000 11245799999999999999 8999999966667899988754 22 233332
Q ss_pred CCCCCCccEEEEE------------ecCCCcCCCCHHHHHHHHHHhcCC
Q 004444 263 EKLLPRGTRLTLY------------LKHDDKGFAHPERIQKLVKNYSQF 299 (753)
Q Consensus 263 ~~~~~~GT~I~L~------------Lk~~~~~~~~~~~i~~lik~ys~f 299 (753)
.++||+|++. |+.... +..+|++++++|+-.
T Consensus 145 ---~~~GTtV~v~~LF~n~P~R~k~lk~~~~---e~~~i~~~l~~~Al~ 187 (348)
T 3na3_A 145 ---GNQGTQITVEDLFYNIATRRKALKNPSE---EYGKILEVVGRYSVH 187 (348)
T ss_dssp ---CCSEEEEEEESTTTTCHHHHHTSCCHHH---HHHHHHHHHHHHHHH
T ss_pred ---CCCCcEEEECcccccCchhhhhccccHH---HHHHHHHHHHHHHhh
Confidence 4799999995 232211 236788899988754
No 28
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.84 E-value=2.2e-09 Score=121.28 Aligned_cols=148 Identities=23% Similarity=0.261 Sum_probs=93.5
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcC---CCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhH
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDK---DNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKF 196 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f 196 (753)
...|+|||+||.||...- ...+.+.|.+..+. +...|+|+|||+||+.+++...|.....+++.
T Consensus 34 ~qvl~nLv~NAida~~~g-----------g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-- 100 (471)
T 1mu5_A 34 YQTVRELIENSLDATDVH-----------GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-- 100 (471)
T ss_dssp HHHHHHHHHHHHHTTGGG-----------TCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC--
T ss_pred HHHHHHHHHHHHHHhhcC-----------CCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccccccccc--
Confidence 347899999999997410 00112344443322 33479999999999999998755433222110
Q ss_pred HHHhhccccCCCCCCccccccchhheeecccCE-----EEEEEecCCCCC-cEEEEee------CCCCceEEEecCCCCC
Q 004444 197 LKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDR-----VVVETKSPKSDK-QYVWEGE------ANASSYTIREETNPEK 264 (753)
Q Consensus 197 ~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadk-----V~V~Tk~~~~~~-~~~w~s~------~~~~~y~i~~~~~~~~ 264 (753)
......|.+|+|++++..+++. +.|.|+. +.+. ++.|.-. ++ ..+...+... .
T Consensus 101 -----------~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~-~~g~~~~~~~Lpl~~~~~~g-~~~~~~~~~~--~ 165 (471)
T 1mu5_A 101 -----------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSP-VNSKRIYTFKLKIDINKNEP-IIVERGSVEN--T 165 (471)
T ss_dssp -----------CCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEEC-TTCSEEEEEEEEECTTTCCE-EEEEEEEEEC--C
T ss_pred -----------ccccCCCCceeeHHHHHHHHHHhCCCceeEEEec-CCCceEEEEEEeccccccCC-cccccccccC--C
Confidence 1224568899999999999886 9999987 3443 5555421 11 2233333211 1
Q ss_pred CCCCccEEEEEecCCCcCCCCHHHHHHHHHHhc
Q 004444 265 LLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYS 297 (753)
Q Consensus 265 ~~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys 297 (753)
...+||+|++.++.++.++ ..+|.+++++|+
T Consensus 166 ~~~~GT~V~v~l~~~~~e~--~~~I~~~l~~~a 196 (471)
T 1mu5_A 166 RGFHGTSVAISIPGDWPKA--KSRIYEYIKRTY 196 (471)
T ss_dssp TTCCEEEEEEEEECCHHHH--HHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEcCCcchH--HHHHHHHHHHHH
Confidence 3479999999987654321 268889999887
No 29
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.84 E-value=1.1e-08 Score=103.26 Aligned_cols=160 Identities=18% Similarity=0.161 Sum_probs=88.4
Q ss_pred chhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHH-------HHH-HhHhhh
Q 004444 119 KEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDL-------VDC-LGTIAQ 190 (753)
Q Consensus 119 ~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el-------~~~-l~tIa~ 190 (753)
+...++|||.||.||... .....|.|.++.+ +.|+|.|||.||+.+++ ... ++.. .
T Consensus 18 ~~~~v~Elv~NsiDa~~~--------------g~a~~I~V~i~~~-g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~-h 81 (201)
T 3fv5_A 18 PNHLGQEVIDNSVDEALA--------------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRL-H 81 (201)
T ss_dssp THHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC--
T ss_pred hhhhhHHHHHHHHHHHhc--------------CCCcEEEEEEeCC-CEEEEEECCCCcCcccccccCcchhheeeeee-c
Confidence 477999999999999741 1123577777643 58999999999999884 222 3322 2
Q ss_pred cchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCce--EEEecCCCCCCCCC
Q 004444 191 SGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSY--TIREETNPEKLLPR 268 (753)
Q Consensus 191 Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y--~i~~~~~~~~~~~~ 268 (753)
.|++ |-.. ......|..|+|.-|+-.|+++++|+|+.. +..+..+..+ |.. .+...... ...+.
T Consensus 82 atsK-~~~~--------~~~~s~GfrGeglssinalS~~l~v~t~~~--g~~~~~~~~~--G~~~~~~~~~g~~-~~~~~ 147 (201)
T 3fv5_A 82 AGGK-FSNK--------NYQFSGGLHGVGISVVNALSKRVEVNVRRD--GQVYNIAFEN--GEKVQDLQVVGTC-GKRNT 147 (201)
T ss_dssp -----------------------------CHHHHHTEEEEEEEEEET--TEEEEEEEET--TEEEEEEEEEEEC-CTTCC
T ss_pred cccC-cCCC--------cccccCcccceecchhhcccceEEEEEEec--CceEEEEEeC--CEEcccceecccC-CCCCC
Confidence 2322 3211 111247999999999999999999999973 2333323332 322 12221110 01468
Q ss_pred ccEEEEEecCCC--cCCCCHHHHHHHHHHhcCCC-CcCeEEec
Q 004444 269 GTRLTLYLKHDD--KGFAHPERIQKLVKNYSQFV-SFPIYTWQ 308 (753)
Q Consensus 269 GT~I~L~Lk~~~--~~~~~~~~i~~lik~ys~fl-~~PI~~~~ 308 (753)
||+|++.-.... ..-.+...|.+.++.|+-.- ...|.+..
T Consensus 148 GT~V~f~Pdr~~F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~ 190 (201)
T 3fv5_A 148 GTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 190 (201)
T ss_dssp EEEEEEEECGGGSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CeEEEEEECHHHcCCCccCHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999999732211 12246788999999987432 35556654
No 30
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.76 E-value=7.4e-09 Score=118.38 Aligned_cols=157 Identities=22% Similarity=0.230 Sum_probs=97.1
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcC---CCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHH
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDK---DNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFL 197 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~ 197 (753)
..|+|||.||+||...- +..+.+.|.+..+. +...|+|.|||+||+.+++...|.....+++.
T Consensus 34 qvl~NLV~NAida~~~g-----------g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~--- 99 (530)
T 2zbk_B 34 QTVRELIENSLDATDVH-----------GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY--- 99 (530)
T ss_dssp HHHHHHHHHHHTTTTTT-----------TCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC---
T ss_pred HHHHHHHHHHHHHHhcc-----------CCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCc---
Confidence 37899999999997310 00113455554433 34579999999999999988755433222110
Q ss_pred HHhhccccCCCCCCccccccchhheeecccC-----EEEEEEecCCCCC-cEEEEe--e----CCCCceEEEecCCCCCC
Q 004444 198 KAMKDSKDAGGDSNLIGQFGVGFYSAFLVSD-----RVVVETKSPKSDK-QYVWEG--E----ANASSYTIREETNPEKL 265 (753)
Q Consensus 198 ~~~~~~~~~~~~~~~IGqFGIGf~S~F~vad-----kV~V~Tk~~~~~~-~~~w~s--~----~~~~~y~i~~~~~~~~~ 265 (753)
......|.+|+|++++..+++ ++.|.|+. +.+. ++.+.- . ++ ......+... ..
T Consensus 100 ----------~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~-~~g~~~~~~~Lpl~~~~~~g-~~~~~~~~~~--~~ 165 (530)
T 2zbk_B 100 ----------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSP-VNSKRIYTFKLKIDINKNEP-IIVERGSVEN--TR 165 (530)
T ss_dssp ----------CCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEEC-TTCSEEEEEEEEEETTTTEE-EEEEEEEEEC--CS
T ss_pred ----------ccccCCCCccchHHHHHHHHHHhCCCceEEEEec-CCCeEEEEEEEEecccccCC-ccccccccCC--CC
Confidence 112456899999999999988 79999987 3333 555441 1 11 1222333221 12
Q ss_pred CCCccEEEEEecCCCcCCCCHHHHHHHHHHhcCC-CCcCeEEe
Q 004444 266 LPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQF-VSFPIYTW 307 (753)
Q Consensus 266 ~~~GT~I~L~Lk~~~~~~~~~~~i~~lik~ys~f-l~~PI~~~ 307 (753)
..+||+|++.++.++.++ ...+.+++++|+-. -..-|.+.
T Consensus 166 ~~~GT~V~v~l~~~~~e~--~~~i~~~l~~~Al~~p~v~~~l~ 206 (530)
T 2zbk_B 166 GFHGTSVAISIPGDWPKA--KSRIYEYIKRTYIITPYAEFIFK 206 (530)
T ss_dssp SCCEEEEEEEEECCHHHH--HHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCcEEEEEeccchhhH--HHHHHHHHHHHHHHCCCcEEEEE
Confidence 478999999987654322 26788888888642 23444443
No 31
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.70 E-value=2.7e-08 Score=109.85 Aligned_cols=162 Identities=19% Similarity=0.212 Sum_probs=98.7
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHH-------HHhHhhhcc
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD-------CLGTIAQSG 192 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~-------~l~tIa~Sg 192 (753)
...|+|||.||+|+.-+ . ....|.|.++.+ ..|+|+|||.||+.+++.+ .+.+....|
T Consensus 34 ~~~v~Elv~N~iD~a~~--~------------~~~~I~V~i~~~-~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~ 98 (390)
T 1kij_A 34 HHLFKEILDNAVDEALA--G------------YATEILVRLNED-GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSG 98 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--T------------SCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEE
T ss_pred HHHHHHHHHHHHHHhhh--C------------CCCEEEEEEEcC-CEEEEEEcCCCCCHHHhhhccccchhhheeeeeec
Confidence 44899999999999832 1 123677777654 5999999999999988643 233333344
Q ss_pred hhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCccEE
Q 004444 193 TAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRL 272 (753)
Q Consensus 193 ~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT~I 272 (753)
.+ | ... ......|..|+|+.++..++++++|+|+.. +..+......+.....+.+.... ...++||+|
T Consensus 99 ~k-f----~~~----~~~~s~G~~G~Gls~v~als~~~~v~t~~~--g~~~~~~~~~G~~~~~~~~~~~~-~~~~~GT~V 166 (390)
T 1kij_A 99 GK-F----EQG----AYKVSGGLHGVGASVVNALSEWTVVEVFRE--GKHHRIAFSRGEVTEPLRVVGEA-PRGKTGTRV 166 (390)
T ss_dssp SG-G----GGS----SCCCCSCSSTTSHHHHHHTEEEEEEEEEET--TEEEEEEEETTEEEEEEEEEEEC-GGGCCEEEE
T ss_pred cc-c----cCc----cccccCCCCCcceeeecccccceEEEEecC--CcEEEEEEcCCcccccceeeccc-cCCCCCcEE
Confidence 33 2 111 112346899999999999999999999973 33443333333112233322210 014689999
Q ss_pred EEEecCCC--cCCCCHHHHHHHHHHhcCCC-CcCeEEec
Q 004444 273 TLYLKHDD--KGFAHPERIQKLVKNYSQFV-SFPIYTWQ 308 (753)
Q Consensus 273 ~L~Lk~~~--~~~~~~~~i~~lik~ys~fl-~~PI~~~~ 308 (753)
++.-.... ..-.+...|.+.++.++-.- ..-|.+..
T Consensus 167 ~f~Pd~~~F~~~~~~~~~l~~rl~~~A~lnpgv~i~l~d 205 (390)
T 1kij_A 167 TFKPDPEIFGNLRFDPSKIRARLREVAYLVAGLKLVFQD 205 (390)
T ss_dssp EEEECHHHHTTCCCCHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred EEEEChHHhCCccccHHHHHHHHHHhcCcCCCcEEEEEe
Confidence 99722110 11246778888888887221 34455543
No 32
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.55 E-value=4.4e-08 Score=113.75 Aligned_cols=156 Identities=19% Similarity=0.270 Sum_probs=94.2
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCC---cEEEEEeCCCCCCHHHHHHHHhHhhhcchhhH
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDN---GIITITDSGIGMTQQDLVDCLGTIAQSGTAKF 196 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~---~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f 196 (753)
...|+|||.||+||... ......|.|.+..++ ..|+|+|||.||+.+++...|... .++++ |
T Consensus 39 ~~Vl~ELV~NAIDa~~~-------------~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~-~atsk-f 103 (621)
T 2q2e_B 39 ITTVKEAVDNALDACEE-------------AGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKL-LYGSR-F 103 (621)
T ss_dssp HHHHHHHHHHHHHHHTT-------------TSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCC-CCC---C
T ss_pred HHHHHHHHHHHHHHHhh-------------cCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhh-ccCCc-c
Confidence 45789999999999841 111224555543332 579999999999999998754322 12221 1
Q ss_pred HHHhhccccCCCCCCccccccchhheeecccCE-----EEEEEecCCCCCcEEEEe-----eCCCCceE-EEecCCCCCC
Q 004444 197 LKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDR-----VVVETKSPKSDKQYVWEG-----EANASSYT-IREETNPEKL 265 (753)
Q Consensus 197 ~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadk-----V~V~Tk~~~~~~~~~w~s-----~~~~~~y~-i~~~~~~~~~ 265 (753)
. ......|..|+|+.++..+++. +.|.|+..+...++.+.- .+. +... ....+ ..
T Consensus 104 ~----------~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~-~~~~~~~~~~---~~ 169 (621)
T 2q2e_B 104 H----------ALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNE-PDILVDEVRD---WF 169 (621)
T ss_dssp C----------CCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCS-CCCCCEEECC---CS
T ss_pred c----------cccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhccc-cccccccccc---CC
Confidence 0 0112348999999999988887 599998743335666653 222 3321 12211 12
Q ss_pred CCCccEEEEEecCCCcCCCC--HHHHHHHHHHhcCCC-CcCeEEe
Q 004444 266 LPRGTRLTLYLKHDDKGFAH--PERIQKLVKNYSQFV-SFPIYTW 307 (753)
Q Consensus 266 ~~~GT~I~L~Lk~~~~~~~~--~~~i~~lik~ys~fl-~~PI~~~ 307 (753)
..+||+|++.++.+ |.. ...|.+.++.|+-.- ..-|.+.
T Consensus 170 ~~~GT~V~~~f~~~---~~~~~~~~I~~~L~~lAllnpgv~I~L~ 211 (621)
T 2q2e_B 170 RPHGTQIELEMRAA---YVKGRRQSIYEYLKATAIVNPHARITLI 211 (621)
T ss_dssp CSSCCCEEEECSCC---CCCCSSSSSHHHHHHHHHHCCSCEEEEC
T ss_pred CCCCCEEEEEecCc---cchHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 46899999998743 333 256777777765332 3344443
No 33
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.50 E-value=3.9e-07 Score=100.55 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=98.0
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHH--------HHHHHhHhhhc
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQD--------LVDCLGTIAQS 191 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e--------l~~~l~tIa~S 191 (753)
...+.|||.||.||... ..-..|.|.++.+ +.|+|.|||.||+.++ +.-.|+..-.+
T Consensus 33 ~~lv~ElvdNsiD~a~~--------------g~a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhag 97 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALA--------------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAG 97 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEE
T ss_pred HHHHHHHHHHHHHHHhc--------------CCCCEEEEEEecC-CEEEEEECCCCcCcccccccCcchhhheeeeeccc
Confidence 67999999999999631 1123677777655 4899999999999887 44444443333
Q ss_pred chhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCccE
Q 004444 192 GTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTR 271 (753)
Q Consensus 192 g~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT~ 271 (753)
|+ | ... .-...-|..|+|.-++=.++.+++|+|+.. +..|..+..++...-.+...... ...++||+
T Consensus 98 sK--f----~~~----~~~~sgGl~GvGls~vnalS~~l~v~~~r~--g~~~~~~~~~G~~~~~~~~~g~~-~~~~~GT~ 164 (390)
T 1s16_A 98 GK--F----SNK----NYQFSGGLHGVGISVVNALSKRVEVNVRRD--GQVYNIAFENGEKVQDLQVVGTC-GKRNTGTS 164 (390)
T ss_dssp SC--S----SSS----SCSSCSCCSSCHHHHHHHTEEEEEEEEEET--TEEEEEEEETTEEEEEEEEEEEC-CTTCCEEE
T ss_pred CC--c----CCC----cccccCCccccchHHHHHhhcccEEEEEEC--CcEEEEEEeCCcccccceecccc-cCCCCceE
Confidence 32 2 110 112356899999999999999999999873 33343333332011112221110 01268999
Q ss_pred EEEEecCCCcCC----CCHHHHHHHHHHhcCCC-CcCeEEec
Q 004444 272 LTLYLKHDDKGF----AHPERIQKLVKNYSQFV-SFPIYTWQ 308 (753)
Q Consensus 272 I~L~Lk~~~~~~----~~~~~i~~lik~ys~fl-~~PI~~~~ 308 (753)
|+.. ++..-| .+...|.+.++.++-.- ..-|.+..
T Consensus 165 V~f~--Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d 204 (390)
T 1s16_A 165 VHFW--PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 204 (390)
T ss_dssp EEEE--ECGGGSSCCSCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EEEE--ECccccCcccccHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9987 222223 46778888888876432 34555543
No 34
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.43 E-value=4.2e-06 Score=91.69 Aligned_cols=152 Identities=15% Similarity=0.188 Sum_probs=88.9
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHH
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKA 199 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~ 199 (753)
...+.|||-||.||... ..-..|.|.++.+ +.|+|+|||.||+. |+. | ..-.+|+ |
T Consensus 32 ~~~v~ElvdNsiDe~~~--------------g~a~~I~V~i~~~-g~I~V~DnGrGIp~-e~v--~-~lhagsK--f--- 87 (369)
T 3cwv_A 32 HHLVYFLLDVAYEEARR--------------GECRDVVLEVGGD-GSIALFCTSRTVTA-ENL--V-RVATGAG--F--- 87 (369)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEEEESSCCH-HHH--H-HHHTTTT--G---
T ss_pred HHHHHHHHhhhHhHHhh--------------CCCCEEEEEEeCC-CEEEEEECCCCcCH-hHe--e-eeecCCC--c---
Confidence 55899999999999631 1223677777655 48999999999999 443 2 3322222 2
Q ss_pred hhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCce-----EEEecC-CCCCCCCCccEEE
Q 004444 200 MKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSY-----TIREET-NPEKLLPRGTRLT 273 (753)
Q Consensus 200 ~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y-----~i~~~~-~~~~~~~~GT~I~ 273 (753)
... +.......- | |.-++=.++.+++|+|+.. +..|..+..++ .- .+.+.. .+ ...++||+|+
T Consensus 88 -~~~-~~~~~y~vs---G-Gls~vnalSs~l~v~t~r~--g~~~~~~~~~G--~~~~~~~~~~~l~~~g-~~~~~GT~V~ 156 (369)
T 3cwv_A 88 -LGR-PPGDGWGWD---S-MLVVSLALSSRYQVDIWAD--GRQWRVMGEHG--HPQGEGAAVTPMEPMP-VSAERGVRVH 156 (369)
T ss_dssp -GGS-SCCCSTTTT---S-SHHHHHHTEEEEEEEEEET--TEEEEEEEETT--EECTTCEEESSCCCCS-SCCSEEEEEE
T ss_pred -CCC-ccccccccc---C-HHHHHHHhhceEEEEEEEC--CCEEEEEEeCC--cccccccccCCceEec-ccCCCCCEEE
Confidence 110 000012222 4 7777888889999999973 33444333332 11 011111 11 1246899999
Q ss_pred EEecCCCcCC----CCHHHHHHHHHHhcCCC-CcCeEEec
Q 004444 274 LYLKHDDKGF----AHPERIQKLVKNYSQFV-SFPIYTWQ 308 (753)
Q Consensus 274 L~Lk~~~~~~----~~~~~i~~lik~ys~fl-~~PI~~~~ 308 (753)
.. ++...| .+...|.+.++.++-.- ..-|.+..
T Consensus 157 f~--Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d 194 (369)
T 3cwv_A 157 FV--PDATIFEVLAFDRARLSRRCNELAALAPGLRVSFAD 194 (369)
T ss_dssp EE--ECTTTCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EE--ECHHHhCCccccHHHHHHHHHHHcCcCCCcEEEEEe
Confidence 87 333333 46778889898887332 34455543
No 35
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.39 E-value=6e-07 Score=91.65 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=91.4
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHH-------HHHHhHhhhcc
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDL-------VDCLGTIAQSG 192 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el-------~~~l~tIa~Sg 192 (753)
...++|||.||.|+... + .--.|.|.++.+ +.|+|+|||.||+.+.. .+.+.+.-..|
T Consensus 37 ~~lv~ElvdNsiDea~~------------g--~~~~I~V~i~~~-g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag 101 (220)
T 4duh_A 37 HHMVFEVVDNAIDEALA------------G--HCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG 101 (220)
T ss_dssp HHHHHHHHHHHHHHHHH------------S--CCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCS
T ss_pred HHHHHHHHHHHHHHHhc------------C--CCCEEEEEEeCC-CcEEEEECCcCcccccccccCcchhhheeeecccC
Confidence 57899999999999742 1 123677777654 58999999999998763 22223322333
Q ss_pred hhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCC--CCceEEEecCCCCCCCCCcc
Q 004444 193 TAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEAN--ASSYTIREETNPEKLLPRGT 270 (753)
Q Consensus 193 ~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~--~~~y~i~~~~~~~~~~~~GT 270 (753)
.+ | ... .-...-|..|+|.-++=.++.+++|+++..+ ..|..+...+ .....+... ..+.||
T Consensus 102 ~K-f----d~~----~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g--~~~~~~f~~G~~~~~l~~~g~-----~~~~GT 165 (220)
T 4duh_A 102 GK-F----DDN----SYKVSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTGE-----TEKTGT 165 (220)
T ss_dssp SC-C----CTT----C--------CCCHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSSCEEEEE-----CSCCEE
T ss_pred CC-c----CCC----ccccccCccceecchhcccccceEEEEEECC--EEEEEEecCCcCcCCceeccc-----cCCCCc
Confidence 22 2 100 1124569999999999999999999998733 3332222222 011111111 247999
Q ss_pred EEEEEecCCCcCC-----CCHHHHHHHHHHhcCCC--CcCeEEecc
Q 004444 271 RLTLYLKHDDKGF-----AHPERIQKLVKNYSQFV--SFPIYTWQE 309 (753)
Q Consensus 271 ~I~L~Lk~~~~~~-----~~~~~i~~lik~ys~fl--~~PI~~~~~ 309 (753)
+|+..- +..-| ++.+.|.+.++.++ |+ ..-|.+.++
T Consensus 166 ~V~F~P--d~~~F~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~de 208 (220)
T 4duh_A 166 MVRFWP--SLETFTNVTEFEYEILAKRLRELS-FLNSGVSIRLRDK 208 (220)
T ss_dssp EEEEEE--CTTTCCSSCSCCHHHHHHHHHHHH-HHCTTSEEEEEET
T ss_pred EEEEEE--CHHHhCCcccCCHHHHHHHHHHHH-hcCCCCEEEEEcc
Confidence 999873 33333 35578888888887 44 455666543
No 36
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.36 E-value=1e-06 Score=97.22 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=96.6
Q ss_pred chhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHH--------HHHHhHhhh
Q 004444 119 KEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDL--------VDCLGTIAQ 190 (753)
Q Consensus 119 ~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el--------~~~l~tIa~ 190 (753)
+...+.|||.||.||..+ ..-..|.|.++.+ +.|+|+|||.||+.++. .-.|+..-.
T Consensus 35 l~~lv~ElvdNsiDea~~--------------g~a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lha 99 (391)
T 1ei1_A 35 LHHMVFEVVDNAIDEALA--------------GHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA 99 (391)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TCCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTE
T ss_pred HHHHHHHHHHhHHHHHhc--------------CCCCEEEEEEeCC-CEEEEEECCCCcccCcccccCcchHHHhheeccc
Confidence 466899999999999731 1123677777765 49999999999998873 323433333
Q ss_pred cchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCC--CCceEEEecCCCCCCCCC
Q 004444 191 SGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEAN--ASSYTIREETNPEKLLPR 268 (753)
Q Consensus 191 Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~--~~~y~i~~~~~~~~~~~~ 268 (753)
+|+ | .+. .-...-|..|+|.-++=.++.+++|+|+.. +..|..+..++ .....+... ..++
T Consensus 100 gsK--f----~~~----~~~vSgGl~GvGls~vnalS~~l~v~~~r~--g~~~~~~~~~G~~~~~l~~~~~-----~~~~ 162 (391)
T 1ei1_A 100 GGK--F----DDN----SYKVSGGLHGVGVSVVNALSQKLELVIQRE--GKIHRQIYEHGVPQAPLAVTGE-----TEKT 162 (391)
T ss_dssp ESC--S----SSS----SCSSCSCCSSCHHHHHHHTEEEEEEEEEET--TEEEEEEEETTEESSCCEEEEE-----CSCC
T ss_pred cCC--c----CCC----cccccCCccccchHHHHHhcCeEEEEEEeC--CcEEEEEEcCCcccccceeccC-----cCCC
Confidence 332 2 110 112356899999999999999999999873 33333333222 011111111 2369
Q ss_pred ccEEEEEecCCC--c-CCCCHHHHHHHHHHhcCCC-CcCeEEec
Q 004444 269 GTRLTLYLKHDD--K-GFAHPERIQKLVKNYSQFV-SFPIYTWQ 308 (753)
Q Consensus 269 GT~I~L~Lk~~~--~-~~~~~~~i~~lik~ys~fl-~~PI~~~~ 308 (753)
||+|+..-.... . .-.+...|.+.++.++-.- ..-|.+..
T Consensus 163 GT~V~f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d 206 (391)
T 1ei1_A 163 GTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRD 206 (391)
T ss_dssp EEEEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred ccEEEEEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEEc
Confidence 999998732211 1 1235678888888776432 45555543
No 37
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.31 E-value=4e-06 Score=85.84 Aligned_cols=159 Identities=19% Similarity=0.218 Sum_probs=93.6
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHH-------HHHHHhHhhhcc
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQD-------LVDCLGTIAQSG 192 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e-------l~~~l~tIa~Sg 192 (753)
...++|+|.||.|+... .....|.|.++.+ ..|+|.|||.||+.++ +.-.|++. ..|
T Consensus 42 ~~~v~Eiv~NaiD~~~~--------------g~~~~I~V~i~~~-g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~l-hag 105 (226)
T 4emv_A 42 HHLVWEIVDNAVDEALS--------------GFGDRIDVTINKD-GSLTVQDHGRGMPTGMHAMGIPTVEVIFTIL-HAG 105 (226)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCGGGCBHHHHHHHCB-C--
T ss_pred HHHHHHHHHHHHHHHhc--------------CCCcEEEEEEeCC-CeEEEEEcCCCccccccccCceehheeEEee-ccc
Confidence 45789999999999731 1123677777664 5899999999999987 33323333 333
Q ss_pred hhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeC-C-CCceE-EEecCCCCCCCCCc
Q 004444 193 TAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEA-N-ASSYT-IREETNPEKLLPRG 269 (753)
Q Consensus 193 ~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~-~-~~~y~-i~~~~~~~~~~~~G 269 (753)
.+ |-.. .-...-|..|+|.-++=.++.+++|+++..+..-...|+. | . ..... +.+.. ....|
T Consensus 106 ~K-fd~~--------~yk~SgGlhGvG~svvNALS~~l~v~v~r~g~~~~q~f~~-Gg~~~~~l~~ig~~~----~~~~G 171 (226)
T 4emv_A 106 GK-FGQG--------GYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFEN-GGKPVTTLKKIGTAL----KSKTG 171 (226)
T ss_dssp ---------------------CGGGCCHHHHHHTEEEEEEEEEETTEEEEEEEET-TTEESSCSEEEEECC----TTCCE
T ss_pred Cc-cCcc--------ceEeccccccccchhhhhcccceEEEEEeCCcEEEEEECC-CCEEcCCceEecccC----CCCCC
Confidence 32 3211 1123569999999999999999999998733111223432 1 1 01112 22221 14789
Q ss_pred cEEEEEecCCC--cCCCCHHHHHHHHHHhcCCC--CcCeEEecc
Q 004444 270 TRLTLYLKHDD--KGFAHPERIQKLVKNYSQFV--SFPIYTWQE 309 (753)
Q Consensus 270 T~I~L~Lk~~~--~~~~~~~~i~~lik~ys~fl--~~PI~~~~~ 309 (753)
|+|+..-...- ..-++.+.|.+.++.++ |+ ..-|.+.++
T Consensus 172 T~V~F~PD~~iF~~~~~~~~~l~~rlrelA-~ln~gv~i~l~de 214 (226)
T 4emv_A 172 TKVTFMPDATIFSTTDFKYNTISERLNESA-FLLKNVTLSLTDK 214 (226)
T ss_dssp EEEEEEECTTTCSCCCCCHHHHHHHHHHHH-HHHCSCEEEEEET
T ss_pred eEEEEEECHHHcCCCCcCHHHHHHHHHHHh-hcCCCCEEEEEec
Confidence 99998743321 11246778888888877 44 456666654
No 38
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.30 E-value=1.7e-06 Score=95.66 Aligned_cols=161 Identities=17% Similarity=0.135 Sum_probs=92.9
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHH--------HHHHHhHhhhcc
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQD--------LVDCLGTIAQSG 192 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e--------l~~~l~tIa~Sg 192 (753)
..+.|||-||.|+.... .....|.|.++.+++.|+|.|||.||+.++ +.-.|++.-.+|
T Consensus 55 ~lv~EivdNsiDe~~~~-------------g~~~~I~V~i~~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhags 121 (400)
T 1zxm_A 55 KIFDEILVNAADNKQRD-------------PKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSS 121 (400)
T ss_dssp HHHHHHHHHHHHHHHHC-------------TTCCEEEEEEETTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEES
T ss_pred HHHHHHHhhHHhHHhhc-------------CCCceEEEEEECCCCEEEEEECCCcccCccccccCccchhheeeeecccC
Confidence 47899999999997321 122367777776668999999999999876 333333333333
Q ss_pred hhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCccEE
Q 004444 193 TAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRL 272 (753)
Q Consensus 193 ~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT~I 272 (753)
+ |-. . .-.-.-|..|+|.-++=.++.+++|+|+...++..|.....++...-....... ....+||+|
T Consensus 122 K--f~~----~----~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~ig~--~~~~~GT~V 189 (400)
T 1zxm_A 122 N--YDD----D----EKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKP--FNGEDYTCI 189 (400)
T ss_dssp C--CCG----G----GCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEE--CCSCCEEEE
T ss_pred C--CCC----C----cccccCCccccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCcceecc--CCCCCccEE
Confidence 2 211 0 111256999999999999999999999873233344333222201111111110 113589999
Q ss_pred EEEecCCC---cCCCCHHH---HHHHHHHhcCCC-CcCeEEe
Q 004444 273 TLYLKHDD---KGFAHPER---IQKLVKNYSQFV-SFPIYTW 307 (753)
Q Consensus 273 ~L~Lk~~~---~~~~~~~~---i~~lik~ys~fl-~~PI~~~ 307 (753)
+..-.... .+ ++.+. |.+.++.++-.- ..-|.+.
T Consensus 190 ~F~Pd~~iF~~~e-f~~~~~~~l~~rlrelA~lnpgv~i~l~ 230 (400)
T 1zxm_A 190 TFQPDLSKFKMQS-LDKDIVALMVRRAYDIAGSTKDVKVFLN 230 (400)
T ss_dssp EEEECGGGGTCSS-CCHHHHHHHHHHHHHHHHHSSSCEEEET
T ss_pred EEEEChHHhCcee-ecHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 98833321 12 24545 556666654221 3445553
No 39
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.00 E-value=1.6e-05 Score=88.00 Aligned_cols=165 Identities=19% Similarity=0.206 Sum_probs=89.9
Q ss_pred cCCC---CchhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHH-------HH
Q 004444 114 SLYS---NKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDL-------VD 183 (753)
Q Consensus 114 ~LYs---~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el-------~~ 183 (753)
.+|- ++...+.|+|.||.|+... + .--.|.|.++.+ +.|+|+|||.||+.+.. .+
T Consensus 43 gMYiGst~~~hlv~EivdNsiDea~a------------g--~~~~I~V~i~~d-gsI~V~DnGrGIPv~~h~~~~~~~~e 107 (408)
T 3lnu_A 43 GMYTDTARPNHLAQEVIDNSVDEALA------------G--HAKQIEVTLYKD-GSCEVSDDGRGMPVDIHPEEKIPGVE 107 (408)
T ss_dssp GGTSCTTSTHHHHHHHHHHHHHHHHT------------T--SCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHH
T ss_pred ccEECCCCcchhhHHHHHHHHHHhhc------------C--CCceEEEEEeCC-CeEEEEEcCCCCCcccccccCCcchh
Confidence 4554 4477999999999999631 1 123677777654 58999999999998762 23
Q ss_pred HHhHhhhcchhhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCC--CCceE-EEecC
Q 004444 184 CLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEAN--ASSYT-IREET 260 (753)
Q Consensus 184 ~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~--~~~y~-i~~~~ 260 (753)
.+.|.-..|.+ |-.. .-...-|..|+|.-++=.++.+++|+++.. +..|..+...+ ..... +.+..
T Consensus 108 ~i~t~lhaggK-fd~~--------~ykvSgGlhGvG~svVNALS~~l~v~v~rd--Gk~~~q~f~~G~~~~~l~~ig~~~ 176 (408)
T 3lnu_A 108 LILTRLHAGGK-FNNR--------NYTFSGGLHGVGVSVVNALSTKVELFIKRE--GSEHRMEFRDGNAASKLEVVGTVG 176 (408)
T ss_dssp HHHHCC-----------------------------CHHHHHHTEEEEEEEEEET--TEEEEEEEETTEECSCCEEEEECC
T ss_pred eEEEecccCCC-cCCC--------ceeecCCccccccceehhccCeEEEEEEEC--CEEEEEEECCCEECCCceEeccCc
Confidence 33333333432 3111 112346999999999999999999999873 33332222222 01112 22221
Q ss_pred CCCCCCCCccEEEEEecCCC--cCCCCHHHHHHHHHHhcCCC-CcCeEEec
Q 004444 261 NPEKLLPRGTRLTLYLKHDD--KGFAHPERIQKLVKNYSQFV-SFPIYTWQ 308 (753)
Q Consensus 261 ~~~~~~~~GT~I~L~Lk~~~--~~~~~~~~i~~lik~ys~fl-~~PI~~~~ 308 (753)
....||+|+..-...- ..-++.+.|.+.++.++=.. ..-|.+.+
T Consensus 177 ----~~~~GT~V~F~PD~~iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~d 223 (408)
T 3lnu_A 177 ----KKNTGTRLRFWADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLHD 223 (408)
T ss_dssp ----TTCCEEEEEEEECGGGSSCSCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred ----CCCCCcEEEEEECHHHhCCCCcCHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 1368999998733221 11246677888888765332 34566654
No 40
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=97.64 E-value=0.00015 Score=72.82 Aligned_cols=141 Identities=19% Similarity=0.266 Sum_probs=80.9
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHH
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKA 199 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~ 199 (753)
...++|||.||.|+.-. .....|.|.++.+ +.|+|.|||.||+.+. -+.|+... .
T Consensus 33 ~~~v~Elv~NsiD~~~a--------------g~~~~I~V~i~~~-g~i~V~DnG~Gip~~~-------h~~~~~~~-~-- 87 (198)
T 3ttz_A 33 HHLVWEIVDNSIDEALA--------------GYANQIEVVIEKD-NWIKVTDNGRGIPVDI-------QEKMGRPA-V-- 87 (198)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TSCCEEEEEEEGG-GEEEEEECSSCCCCSB-------CTTTSSBH-H--
T ss_pred HHHHHHHHHHHHhHHhc--------------CCCcEEEEEEeCC-CeEEEEECCCCccccc-------cCcCCCcc-c--
Confidence 56889999999998531 1123566666554 5999999999999861 11222211 0
Q ss_pred hhccccCCCCCCccccccchhhee-ecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCccEEEEEecC
Q 004444 200 MKDSKDAGGDSNLIGQFGVGFYSA-FLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLTLYLKH 278 (753)
Q Consensus 200 ~~~~~~~~~~~~~IGqFGIGf~S~-F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT~I~L~Lk~ 278 (753)
..+ |+ .|+ =.++.+++|+|+..+ ..|..+...+.....+.... ...+.||+|+.. +
T Consensus 88 -----------e~i--~t---~SvVNALS~~l~v~v~r~g--~~~~~~f~~G~~~~~l~~i~---~~~~~GT~V~F~--P 144 (198)
T 3ttz_A 88 -----------EVI--LT---SSVVNALSQDLEVYVHRNE--TIYHQAYKKGVPQFDLKEVG---TTDKTGTVIRFK--A 144 (198)
T ss_dssp -----------HHH--HH---TCHHHHTEEEEEEEEEETT--EEEEEEEETTEESSCCEEEE---ECSCCEEEEEEE--E
T ss_pred -----------ccc--ce---eEehhhhcCeEEEEEEECC--cEEEEEEeCCEECCCceecc---CCCCCCcEEEEE--E
Confidence 111 22 333 346689999998733 33332322220101111111 124799999987 3
Q ss_pred CCcCC-----CCHHHHHHHHHHhcCCC--CcCeEEecc
Q 004444 279 DDKGF-----AHPERIQKLVKNYSQFV--SFPIYTWQE 309 (753)
Q Consensus 279 ~~~~~-----~~~~~i~~lik~ys~fl--~~PI~~~~~ 309 (753)
+..-| .+...|.+.++.++ |+ ..-|.+.++
T Consensus 145 d~~iF~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~de 181 (198)
T 3ttz_A 145 DGEIFTETTVYNYETLQQRIRELA-FLNKGIQITLRDE 181 (198)
T ss_dssp CTTTCCSCCCCCHHHHHHHHHHHH-HHSTTCEEEEEEC
T ss_pred CHHHhccCCccCHHHHHHHHHHHh-hcCCCCEEEEEee
Confidence 33444 46678888888887 44 455666543
No 41
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.54 E-value=0.00059 Score=75.80 Aligned_cols=129 Identities=19% Similarity=0.261 Sum_probs=79.4
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHH--------HHhHhhhcch
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD--------CLGTIAQSGT 193 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~--------~l~tIa~Sg~ 193 (753)
.+.|+|.||+|+.... ..--.|.|.++.++..|+|+|||.||..+.... .|+++-.+|+
T Consensus 68 lv~EivdNaiDe~~~~-------------g~~~~I~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgK 134 (418)
T 1pvg_A 68 IFDEILVNAADNKVRD-------------PSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSN 134 (418)
T ss_dssp HHHHHHHHHHHHHHHC-------------TTCCEEEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESC
T ss_pred HHHHHHhCHHHHHHhc-------------CCCCEEEEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEecccc
Confidence 7899999999997421 122367888777768999999999998765221 2333323332
Q ss_pred hhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcE--EEEeeC-C-CCceEEEecCCCCCCCCCc
Q 004444 194 AKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQY--VWEGEA-N-ASSYTIREETNPEKLLPRG 269 (753)
Q Consensus 194 ~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~--~w~s~~-~-~~~y~i~~~~~~~~~~~~G 269 (753)
| ..+ .-.-.-|.-|+|.-.+=.++.+++|+++...++..| .|+... . ... .+.... ....|
T Consensus 135 --f----d~~----~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~~p-~i~~~~----~~~tG 199 (418)
T 1pvg_A 135 --Y----DDD----EKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPP-KITSYK----KGPSY 199 (418)
T ss_dssp --C----CTT----SCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCC-EEEECC----SSCCE
T ss_pred --c----CCC----ceeccCCccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccCCC-eecccC----CCCCc
Confidence 2 000 111345999999988889999999999852233333 343210 0 011 233321 13689
Q ss_pred cEEEEEecC
Q 004444 270 TRLTLYLKH 278 (753)
Q Consensus 270 T~I~L~Lk~ 278 (753)
|+|+..-..
T Consensus 200 T~V~F~PD~ 208 (418)
T 1pvg_A 200 TKVTFKPDL 208 (418)
T ss_dssp EEEEEEECG
T ss_pred eEEEEEECh
Confidence 999987544
No 42
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.10 E-value=0.00059 Score=63.36 Aligned_cols=85 Identities=20% Similarity=0.228 Sum_probs=50.7
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHH
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKA 199 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~ 199 (753)
...+.|||.||+.+.... .....+.|.+..+.+.-.|+|.|||.||+ ++.+.+ .....
T Consensus 41 ~~il~~l~~Nai~h~~~~-----------~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~----~~~~~----- 98 (145)
T 1th8_A 41 KTVVSEAVTNAIIHGYNN-----------DPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEAR----QPLFT----- 98 (145)
T ss_dssp HHHHHHHHHHHHHTTSTT-----------CTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHT----CCC-------
T ss_pred HHHHHHHHHHHHHHhcCC-----------CCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhh----ccccc-----
Confidence 347889999998875210 01233455555555556799999999999 554422 11110
Q ss_pred hhccccCCCCCCccccccchhheeecccCEEEEEEe
Q 004444 200 MKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETK 235 (753)
Q Consensus 200 ~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk 235 (753)
.+ ...+..|+|++-+-.+++++.+.+.
T Consensus 99 --------~~-~~~~~~GlGL~iv~~~~~~i~~~~~ 125 (145)
T 1th8_A 99 --------TK-PELERSGMGFTIMENFMDEVIVESE 125 (145)
T ss_dssp --------------CCCSCHHHHHHHHSSEEEEEEE
T ss_pred --------CC-CCCCCCcchHHHHHHHHheEEEEeC
Confidence 00 1224579999988777775555543
No 43
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.05 E-value=0.00023 Score=69.89 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=24.5
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCL 185 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l 185 (753)
.|.+||.||+.+.. ....|.|...... |.|.|||.||+.+++.+.+
T Consensus 121 il~nLl~NAi~~~~----------------~~~~i~i~~~~~~--i~V~D~G~Gi~~~~~~~if 166 (222)
T 3jz3_A 121 LVRNLLDNAVRYSP----------------QGSVVDVTLNADN--FIVRDNGPGVTPEALARIG 166 (222)
T ss_dssp HHHHHHHHHHHTCC----------------TTCEEEEEECSSE--EEEECSCC-----------
T ss_pred HHHHHHHHHHHcCC----------------CCCeEEEEEccCe--EEEEECCCCCCHHHHHHHH
Confidence 67789999988751 1124666654433 9999999999999877643
No 44
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.05 E-value=0.00047 Score=70.06 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=35.6
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHH
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD 183 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~ 183 (753)
..|.+||.||+++.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+
T Consensus 158 ~il~nLl~NA~~~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~ 206 (268)
T 4ew8_A 158 QTLDHLVENALRQTP--------------PGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAH 206 (268)
T ss_dssp HHHHHHHHHHHHHSC--------------TTCEEEEEEEECSSEEEEEEEESSCCCCHHHHTT
T ss_pred HHHHHHHHHHHHhCC--------------CCCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHH
Confidence 367889999998862 1234455555555556799999999999988765
No 45
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.01 E-value=0.001 Score=72.77 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=62.7
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHhh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~~ 201 (753)
.|.+||.||+.|........ ...+.+.|.+..+.+.-.|+|.|||.||+.+++.+.|-.. .++.... ...
T Consensus 235 il~NLl~NAik~~~~~~~~~-------~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f-~~~~~~~--~~~ 304 (394)
T 2btz_A 235 MLFELFKNAMRATVESHESS-------LILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYM-YSTAPTP--QPG 304 (394)
T ss_dssp HHHHHHHHHHHHHHHTTTTC-------SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTT-TTCCC-------
T ss_pred HHHHHHHHHHHHhhhccccC-------CCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhccc-ccCCCCC--Ccc
Confidence 56789999999985321000 0112345555555555679999999999999988744211 1111000 000
Q ss_pred ccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCccEEEEEecC
Q 004444 202 DSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLTLYLKH 278 (753)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT~I~L~Lk~ 278 (753)
......+.+|+|++-|-.+++ .. + |.+.+... .+.||+++|+|..
T Consensus 305 ------~~~~~~~G~GLGL~i~~~i~~-------~~------------g-G~i~v~s~------~g~Gt~f~i~lP~ 349 (394)
T 2btz_A 305 ------TGGTPLAGFGYGLPISRLYAK-------YF------------Q-GDLQLFSM------EGFGTDAVIYLKA 349 (394)
T ss_dssp ---------------CCHHHHHHHHHH-------HT------------T-CEEEEEEE------TTTEEEEEEEEES
T ss_pred ------cCCCCCCCccCCHHHHHHHHH-------Hh------------C-CEEEEEec------CCCceEEEEEecC
Confidence 012345779999987755542 11 1 45555542 2579999999864
No 46
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=96.93 E-value=0.00084 Score=73.49 Aligned_cols=116 Identities=21% Similarity=0.213 Sum_probs=67.3
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHhh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~~ 201 (753)
.|.+||.||+.|........ ...+.+.|.+..+.+.-.|+|.|+|.||+.+++.+.|-.. .++...- ..
T Consensus 234 il~NLl~NAik~~~~~~~~~-------~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f-~~~~~~~--~~- 302 (394)
T 2e0a_A 234 MLFELFKNAMRATVEHQENQ-------PSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYT-YSTAPTP--VM- 302 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTTS-------SSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTT-CCSSCCC-----
T ss_pred HHHHHHHHHHHHHHhccccc-------CCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcC-ccCCCCC--Cc-
Confidence 56789999999986421000 0122345555555555679999999999999988744211 1111000 00
Q ss_pred ccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCccEEEEEecC
Q 004444 202 DSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLTLYLKH 278 (753)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT~I~L~Lk~ 278 (753)
+. ......+.+|+|++-|-.+++ .. + |.+.+... .+.||+++|+|..
T Consensus 303 ~~----~~~~~~~G~GLGL~i~~~i~~-------~~------------g-G~i~v~s~------~g~Gt~f~i~lP~ 349 (394)
T 2e0a_A 303 DN----SRNAPLAGFGYGLPISRLYAK-------YF------------Q-GDLNLYSL------SGYGTDAIIYLKA 349 (394)
T ss_dssp --------CCCSSCSSCHHHHHHHHHH-------HT------------T-CEEEEEEE------TTTEEEEEEEEES
T ss_pred Cc----CCCCCCCCcccCHHHHHHHHH-------Hh------------C-CEEEEEec------CCccEEEEEEeCC
Confidence 00 022345789999987755532 11 1 45555542 2579999999864
No 47
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=96.90 E-value=0.00082 Score=66.90 Aligned_cols=48 Identities=29% Similarity=0.523 Sum_probs=35.9
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD 183 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~ 183 (753)
.|.+||.||+.+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+
T Consensus 127 il~nLl~NA~~~~~--------------~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~ 174 (244)
T 3d36_A 127 CLLNVMKNAIEAMP--------------NGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLER 174 (244)
T ss_dssp HHHHHHHHHHHTCT--------------TCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcc--------------CCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHH
Confidence 56789999988862 1234556666665566799999999999998776
No 48
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=96.88 E-value=0.00029 Score=67.51 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=45.7
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCC--CcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKD--NGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKA 199 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~--~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~ 199 (753)
.|.+||.||..+.. ....+.|.+..... .-.|+|.|||.||+.+++...+... .++..
T Consensus 47 il~nLl~NAi~~~~--------------~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~-~~~~~----- 106 (177)
T 3sl2_A 47 VLDNIISNALKYSP--------------EGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRF-YRVDK----- 106 (177)
T ss_dssp HHHHHHHHHHHTCC--------------TTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTT-CCCC------
T ss_pred HHHHHHHHHHHhCC--------------CCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhh-ccCCC-----
Confidence 67789999998852 12344566543433 3468999999999998876532111 11110
Q ss_pred hhccccCCCCCCccccccchhheeecc
Q 004444 200 MKDSKDAGGDSNLIGQFGVGFYSAFLV 226 (753)
Q Consensus 200 ~~~~~~~~~~~~~IGqFGIGf~S~F~v 226 (753)
......+..|+|++.+-.+
T Consensus 107 --------~~~~~~~g~GlGL~iv~~~ 125 (177)
T 3sl2_A 107 --------ARTRKLGGTGLGLAIAKEM 125 (177)
T ss_dssp -------------CCCCCCHHHHHHHH
T ss_pred --------CCCCCCCCCCcCHHHHHHH
Confidence 1112335789999876554
No 49
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=96.87 E-value=0.0012 Score=72.86 Aligned_cols=117 Identities=19% Similarity=0.190 Sum_probs=64.2
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHhh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~~ 201 (753)
.|.+||.||+.|.....-.. + ...+.+.|.+..+.+.-.|+|.|||.||+.+++.+.|-. ..++... ..+.
T Consensus 257 vl~NLl~NAik~~~~~~~~~---~---~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~-f~~~~~~--~~~~ 327 (419)
T 1y8o_A 257 MLFELFKNSMRATVELYEDR---K---EGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNY-MYSTAPR--PSLE 327 (419)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---S---SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCT-TTC----------
T ss_pred HHHHHHHHHHHHHHhhcccc---C---CCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCc-ccccCCC--CCcc
Confidence 56789999999986431100 0 002234555555555567999999999999998764321 1111110 0000
Q ss_pred ccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCccEEEEEecC
Q 004444 202 DSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLTLYLKH 278 (753)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT~I~L~Lk~ 278 (753)
. ......+.+|+|+.-|-.+++ .. + |.+.+... .+.||+++|+|..
T Consensus 328 ~-----~~~~~~~G~GLGL~I~k~iv~-------~~------------g-G~I~v~s~------~g~Gt~f~i~LP~ 373 (419)
T 1y8o_A 328 P-----TRAAPLAGFGYGLPISRLYAR-------YF------------Q-GDLKLYSM------EGVGTDAVIYLKA 373 (419)
T ss_dssp ----------CC--CTTHHHHHHHHHH-------HT------------T-CEEEEEEE------TTTEEEEEEEEES
T ss_pred c-----cCCCCcCCeecCHHHHHHHHH-------Hh------------C-CEEEEEec------CCCCEEEEEEecC
Confidence 0 012345779999987655532 11 1 45556543 2579999999864
No 50
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=96.79 E-value=0.00049 Score=75.04 Aligned_cols=57 Identities=32% Similarity=0.404 Sum_probs=38.0
Q ss_pred hHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHH
Q 004444 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD 183 (753)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~ 183 (753)
..|.+||.||+.|.....- ..+ ...+.+.|.+..+.+.-.|+|.|||.||+.+++.+
T Consensus 241 ~il~NLl~NAik~~~~~~~---~~~---~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~ 297 (388)
T 1gkz_A 241 YILPELLKNAMRATMESHL---DTP---YNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDR 297 (388)
T ss_dssp HHHHHHHHHHHHHHHHTCT---TCT---TSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTT
T ss_pred HHHHHHHHHHHHHhhcccc---CCC---CCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHH
Confidence 4788999999999863210 000 01124455555555556799999999999988765
No 51
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=96.61 E-value=0.0023 Score=59.26 Aligned_cols=49 Identities=18% Similarity=0.212 Sum_probs=35.8
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCL 185 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l 185 (753)
.|.+||.||..+.. ...+.|.+..+.+.-.|+|.|||.||+.+++.+.+
T Consensus 50 il~nLl~NA~~~~~---------------~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if 98 (150)
T 1ysr_A 50 AVDNAIANAVKHGG---------------ATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVF 98 (150)
T ss_dssp HHHHHHHHHHHTTC---------------CSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHH
T ss_pred HHHHHHHHHHhcCC---------------CcEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHh
Confidence 56689999998741 12345555555555679999999999999987744
No 52
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0074 Score=74.82 Aligned_cols=147 Identities=16% Similarity=0.226 Sum_probs=81.1
Q ss_pred HHHHhHHhHHH-HHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHH-------HHHHHhHhhhcch
Q 004444 122 FLRELISNASD-ALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQD-------LVDCLGTIAQSGT 193 (753)
Q Consensus 122 flRELIqNA~D-A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e-------l~~~l~tIa~Sg~ 193 (753)
.+.|.|.||+| |++ ....-.|.|.++.+++.|+|+|||-||.-+. ..+.+.|.-..|.
T Consensus 63 l~~EildNsiDea~a--------------g~~~~~I~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGg 128 (1177)
T 4gfh_A 63 IFDEILVNAADNKVR--------------DPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 128 (1177)
T ss_dssp HHHHHHHHHHHHHHH--------------CTTCCEEEEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEES
T ss_pred EeeEEEEChHhHHhh--------------CCCCCeEEEEEECCCCEEEEEecCCcccccccCCCCCEeeeeecccccccc
Confidence 56899999999 442 1111368888887789999999999997531 1122333333333
Q ss_pred hhHHHHhhccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcE--EEEeeCC-CCceEEEecCCCCCCCCCcc
Q 004444 194 AKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQY--VWEGEAN-ASSYTIREETNPEKLLPRGT 270 (753)
Q Consensus 194 ~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~--~w~s~~~-~~~y~i~~~~~~~~~~~~GT 270 (753)
+ | ..+ .-.-.-|.-|||.--+=.++.++.|.+....++..| .|+.... .+.-.+.... ....||
T Consensus 129 K-F----d~~----~ykvSGGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~~~----~~~tGT 195 (1177)
T 4gfh_A 129 N-Y----DDD----EKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYK----KGPSYT 195 (1177)
T ss_dssp C-C----CCS----SCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECC----SSCCCE
T ss_pred C-c----CCC----CCeEeccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCeeecCC----CCCCce
Confidence 2 2 110 111235999999876667788877776542333333 3432111 0111233222 236799
Q ss_pred EEEEEecCCC--cCCCCHHHHHHHHHH
Q 004444 271 RLTLYLKHDD--KGFAHPERIQKLVKN 295 (753)
Q Consensus 271 ~I~L~Lk~~~--~~~~~~~~i~~lik~ 295 (753)
+|+..-...- ..-++.+.+....++
T Consensus 196 ~V~F~PD~~iF~~~~~~~d~l~~~~r~ 222 (1177)
T 4gfh_A 196 KVTFKPDLTRFGMKELDNDILGVMRRR 222 (1177)
T ss_dssp EEEEEECHHHHTCSSCCHHHHHHHHHH
T ss_pred EEEEEeCHHhcCCcEeCHHHHHHHHHH
Confidence 9987644321 122355555554444
No 53
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=96.48 E-value=0.0021 Score=70.62 Aligned_cols=116 Identities=15% Similarity=0.172 Sum_probs=66.8
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHHHhh
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~~~~ 201 (753)
.|.+||.||+.|.....-.. ...+.+.|.+..+.+.-.|+|.|||.||+.+++.+.|-. ..++... .
T Consensus 247 il~NLl~NAik~t~~~~~~~-------~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~-f~~~~~~-----~ 313 (407)
T 2q8g_A 247 MVFELFKNAMRATMEHHANR-------GVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNY-MYSTAPR-----P 313 (407)
T ss_dssp HHHHHHHHHHHHHHHHSTTT-------CCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCT-TTTCCCC-----C
T ss_pred HHHHHHHHHHHHHhhccccC-------CCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCc-cccCCCC-----C
Confidence 56789999999986421000 012234555555545567999999999999998763321 1111100 0
Q ss_pred ccccCCCCCCccccccchhheeecccCEEEEEEecCCCCCcEEEEeeCCCCceEEEecCCCCCCCCCccEEEEEecC
Q 004444 202 DSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLTLYLKH 278 (753)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk~~~~~~~~~w~s~~~~~~y~i~~~~~~~~~~~~GT~I~L~Lk~ 278 (753)
.. + .......|.+|+|+.-|-.+++ .. + |.+.+... .+.||+++|+|..
T Consensus 314 ~~-~-~~~~~~~~G~GLGL~Ivr~i~~-------~~------------g-G~i~v~s~------~g~Gt~f~i~LP~ 362 (407)
T 2q8g_A 314 RV-E-TSRAVPLAGFGYGLPISRLYAQ-------YF------------Q-GDLKLYSL------EGYGTDAVIYIKA 362 (407)
T ss_dssp CS-S-CCSCCCSSCTTCHHHHHHHHHH-------HT------------T-CEEEEEEE------TTTEEEEEEEEES
T ss_pred Cc-c-ccCCCCCCCcCCCHHHHHHHHH-------Hh------------C-CEEEEEEc------CCCceEEEEEECC
Confidence 00 0 0022356789999987655532 11 1 45555542 2579999999864
No 54
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=96.46 E-value=0.0048 Score=57.00 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=34.8
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD 183 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~ 183 (753)
.|.+||.||..+.. ..+.|.+..+.+.-.|+|.|||.||+.+++.+
T Consensus 48 il~nLl~NAi~~~~----------------~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~ 93 (152)
T 1id0_A 48 VMGNVLDNACKYCL----------------EFVEISARQTDEHLYIVVEDDGPGIPLSKREV 93 (152)
T ss_dssp HHHHHHHHHHHHCS----------------SEEEEEEEECSSCEEEEEEESSSCCCGGGTTG
T ss_pred HHHHHHHHHHHhCc----------------CeEEEEEEecCCEEEEEEEeCCCCcCHHHHHH
Confidence 66789999998852 13455555555566899999999999988765
No 55
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=96.41 E-value=0.0026 Score=61.51 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=35.2
Q ss_pred HHHHhHHhHHHHHHH----HHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHH
Q 004444 122 FLRELISNASDALDK----LRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD 183 (753)
Q Consensus 122 flRELIqNA~DA~~k----~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~ 183 (753)
.|.+||.||..+... +.... + .....+.|.+..+.+.-.|+|.|||.||+.+++.+
T Consensus 51 il~nLl~NAik~~~~~~~~~~~~~-~-----~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~ 110 (189)
T 1i58_A 51 PLLHLLRNAIDHGIEPKEERIAKG-K-----PPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIR 110 (189)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHT-S-----CSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccccccc-C-----CCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHhh
Confidence 488999999999610 00000 0 01233444444455556799999999999998743
No 56
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=96.16 E-value=0.0022 Score=59.02 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=34.4
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD 183 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~ 183 (753)
.+.+||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+
T Consensus 51 il~nll~NAi~~~~--------------~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~ 98 (152)
T 3a0y_A 51 VLINLVQNAIEATG--------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK 98 (152)
T ss_dssp HHHHHHHHHHHHHC--------------TTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTG
T ss_pred HHHHHHHHHHHhcC--------------CCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHh
Confidence 56689999998862 1233455555444456789999999999988765
No 57
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=95.93 E-value=0.0029 Score=64.05 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=33.2
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEE--cCCCcEEEEEeCCCCCCHHHHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQT--DKDNGIITITDSGIGMTQQDLVDC 184 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~~el~~~ 184 (753)
.|..||.||..+... ......|.|.. +.+.-.|+|.|||.||+.+++.+.
T Consensus 142 il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~i 193 (258)
T 2c2a_A 142 VLLNLLNNGVKYSKK-------------DAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRI 193 (258)
T ss_dssp HHHHHHHHHHHTCCT-------------TCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGG
T ss_pred HHHHHHHHHHhcCcC-------------CCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhh
Confidence 456799999887521 11123455543 344456899999999999887653
No 58
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=95.78 E-value=0.0065 Score=56.93 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=33.3
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD 183 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~ 183 (753)
.|.+||.||..+. ...+.|.+..+.+.-.|.|.|||.||+.+++.+
T Consensus 51 il~nll~NAik~~----------------~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~ 96 (161)
T 1bxd_A 51 AVANMVVNAARYG----------------NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKH 96 (161)
T ss_dssp HHHHHHHHHHTTC----------------CSCEEEEEEEETTEEEEEEEEESSCSCTTGGGC
T ss_pred HHHHHHHHHHhhc----------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 5668999997663 123455555555556799999999999988765
No 59
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=95.63 E-value=0.01 Score=53.81 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=32.4
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDL 181 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el 181 (753)
.++||+.||..+. ....+.|.+..+.+.-.|+|.|||.||+.+++
T Consensus 44 il~nll~Na~k~~---------------~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 44 CLKEAVTNVVKHS---------------QAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHT---------------CCSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHhcC---------------CCcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 6789999998774 12345566655555567999999999986543
No 60
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=95.44 E-value=0.019 Score=62.53 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=35.6
Q ss_pred HHHHhHHhHHHHH----HHHHhhccCCCcccCCCCCccEEEE--EcCCCcEEEEEeCCCCCCHHHHHH
Q 004444 122 FLRELISNASDAL----DKLRYLGVTEPELLKDAVDLDIRIQ--TDKDNGIITITDSGIGMTQQDLVD 183 (753)
Q Consensus 122 flRELIqNA~DA~----~k~r~~~~~~~~~~~~~~~~~I~I~--~d~~~~~l~I~DnGiGMt~~el~~ 183 (753)
.|.+||.||.|+. +.|+... ......|.|. .+.+.-.|+|.|||.||+.+.+.+
T Consensus 110 ~l~nLl~NAi~h~~e~~~~r~~~g--------k~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~~ 169 (379)
T 1b3q_A 110 PLLHLLRNAIDHGIEPKEERIAKG--------KPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIR 169 (379)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHTT--------CCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHhcC--------CCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHHH
Confidence 4889999999996 2222111 1123345554 444445789999999999998743
No 61
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=95.37 E-value=0.013 Score=57.48 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=30.7
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDL 181 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el 181 (753)
.++||+.||..+. ....+.|.+..+.+.-.|+|.|||.||+.+.+
T Consensus 134 il~nll~Na~k~~---------------~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 134 CLKEAVTNVVKHS---------------QAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHT---------------CCSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHhC---------------CCCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 6889999998775 12345566555555667999999999998765
No 62
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=95.22 E-value=0.0092 Score=53.32 Aligned_cols=43 Identities=30% Similarity=0.510 Sum_probs=31.6
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQD 180 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e 180 (753)
.++||+.||..+.. ...+.|.+..+.+ -.|+|+|||.||+.+.
T Consensus 43 il~nll~Na~k~~~---------------~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 43 VLREAVSNAVRHAN---------------ATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHTCTT---------------CCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHhCC---------------CCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 67889999976641 2345666665656 7899999999998755
No 63
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=94.92 E-value=0.013 Score=54.18 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=28.1
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCC----------CcEEEEEeCCCCCCHHHHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKD----------NGIITITDSGIGMTQQDLVDC 184 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~----------~~~l~I~DnGiGMt~~el~~~ 184 (753)
.+.+||.||..+... ....+.|.+..+.. .-.|+|.|||.||+.+++.+.
T Consensus 52 il~nLl~NAik~~~~-------------~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~l 111 (160)
T 1r62_A 52 VLLNIVRNALQALGP-------------EGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTL 111 (160)
T ss_dssp HHHHHHHHHHHHHGG-------------GCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC--------
T ss_pred HHHHHHHHHHHHhhc-------------cCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHh
Confidence 567899999998731 02234444444333 446899999999999988763
No 64
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=94.71 E-value=0.0086 Score=53.80 Aligned_cols=43 Identities=37% Similarity=0.524 Sum_probs=31.3
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQD 180 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e 180 (753)
.+.|||.||..+. ....+.|.+..+.+ -.|+|.|||.||+.++
T Consensus 47 il~nll~NA~k~~---------------~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 47 VVREAVSNAVRHA---------------AASTLTVRVKVDDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHCCCCS---------------SCCEEEEEEEESSE-EEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHhC---------------CCceEEEEEEEcCC-EEEEEecCCCCCCccc
Confidence 6788999988774 12345666666666 7799999999997543
No 65
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=93.51 E-value=0.036 Score=58.00 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=34.3
Q ss_pred HHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCCCCHHHHHH
Q 004444 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD 183 (753)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~ 183 (753)
.|.+||.||+.+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+
T Consensus 248 vl~nLl~NA~k~~~--------------~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 295 (349)
T 3a0r_A 248 VLINLVQNAIEATG--------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK 295 (349)
T ss_dssp HHHHHHTHHHHTTC--------------TTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTT
T ss_pred HHHHHHHHHHHhcc--------------CCCEEEEEEEecCCEEEEEEEECCCCCChHHHhh
Confidence 57788888888751 2234555555555556789999999999987654
No 66
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=85.15 E-value=0.69 Score=46.75 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=30.5
Q ss_pred HHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCCCcEEEEEeCCCC--CCHHHHHH
Q 004444 123 LRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIG--MTQQDLVD 183 (753)
Q Consensus 123 lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiG--Mt~~el~~ 183 (753)
+.=||+||.+|.. ....+.|.+..+.+.-.|+|.|+|.| +..+.+..
T Consensus 151 l~NLl~NA~~a~~--------------~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~~~ 199 (247)
T 4fpp_A 151 VLNIAQIAASALP--------------AGGVATVKGVAADGRFSIIADAKGPRARLRPEVLAG 199 (247)
T ss_dssp HHHHHHHHHTTCT--------------TCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHHHH
T ss_pred HHHHHHHHHHhcC--------------CCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHHHH
Confidence 4458888888762 23345566655556667999999977 55544443
No 67
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=66.71 E-value=5.2 Score=43.51 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=42.2
Q ss_pred hhHHHHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEcCC-CcEEEEEeCCCCCCHHHHHHHHhHhhhcchhhHHH
Q 004444 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKD-NGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLK 198 (753)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~el~~~l~tIa~Sg~~~f~~ 198 (753)
...+.||+.||+.+.- +. .....+.|++..+.+ .-.|+|.|+|.|++.. +
T Consensus 299 ~l~v~El~~Nav~Ha~---------~~--~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~-----------~------- 349 (399)
T 3ke6_A 299 VHAISEFVENAVEHGY---------AT--DVSKGIVVAAALAGDGNVRASVIDRGQWKDHR-----------D------- 349 (399)
T ss_dssp HHHHHHHHHHHHHHBC---------CS--CCTTCEEEEEEECTTSEEEEEEEESCBC-----------------------
T ss_pred HHHHHHHHHHHHHhcc---------cC--CCCceEEEEEEEcCCCEEEEEEEECCCCCCCC-----------C-------
Confidence 4689999999998851 00 113345555555533 4578999999999764 0
Q ss_pred HhhccccCCCCCCccccccchhheeecccCEEEEEEe
Q 004444 199 AMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETK 235 (753)
Q Consensus 199 ~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkV~V~Tk 235 (753)
.. +.-|.|++-+=.+|+++.+.+.
T Consensus 350 ---------~~----~~~G~GL~lv~~l~~~~~~~~~ 373 (399)
T 3ke6_A 350 ---------GA----RGRGRGLAMAEALVSEARIMHG 373 (399)
T ss_dssp --------------------CHHHHHTTSSEEEEEEE
T ss_pred ---------CC----CCCCcHHHHHHHHHHheeeEEC
Confidence 00 2346677777777888776543
No 68
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=63.93 E-value=6.5 Score=38.72 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=34.6
Q ss_pred HHhHHhHHHHHHHHHhhccCCCcccCCCCCccEEEEEc--CCCcEEEEEeCCCCCCHHHHHHH
Q 004444 124 RELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTD--KDNGIITITDSGIGMTQQDLVDC 184 (753)
Q Consensus 124 RELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d--~~~~~l~I~DnGiGMt~~el~~~ 184 (753)
-.|+.||.+|++... .+ .....+.|.|..+ .+.-.|.|.|+|.|++.+.+.+.
T Consensus 111 gnLi~na~~Ai~~~~-----~~---~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~i 165 (192)
T 1ixm_A 111 AKLMRKLFHLFDQAV-----SR---ESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDI 165 (192)
T ss_dssp HHHHHHHHHHHHHHB-----CT---TSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC--
T ss_pred HHHHHHHHHHHHhhh-----cc---CCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHH
Confidence 458999999986430 01 1233455555555 45678999999999999876653
Done!