Query 004445
Match_columns 753
No_of_seqs 202 out of 405
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 23:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1410 Nuclear transport rece 100.0 5E-113 1E-117 924.4 49.5 618 25-746 1-631 (1082)
2 COG5101 CRM1 Importin beta-rel 100.0 2.8E-30 6.1E-35 280.1 30.9 345 33-467 14-373 (1053)
3 KOG2020 Nuclear transport rece 99.9 4.7E-22 1E-26 236.1 29.7 346 33-470 11-368 (1041)
4 KOG4541 Nuclear transport rece 99.9 1.6E-20 3.6E-25 202.3 22.5 429 290-731 1-443 (748)
5 KOG4541 Nuclear transport rece 99.9 1.3E-21 2.8E-26 210.8 10.7 276 448-744 3-338 (748)
6 KOG2021 Nuclear mRNA export fa 99.6 1.8E-11 3.9E-16 137.5 45.6 264 32-365 2-275 (980)
7 KOG2022 Nuclear transport rece 99.4 1.1E-08 2.3E-13 117.8 42.3 155 23-186 1-163 (982)
8 KOG2171 Karyopherin (importin) 99.1 5.2E-07 1.1E-11 107.3 39.7 182 33-226 4-187 (1075)
9 PF08389 Xpo1: Exportin 1-like 99.0 5E-09 1.1E-13 100.2 12.6 147 123-339 1-148 (148)
10 PF03810 IBN_N: Importin-beta 98.7 6.9E-08 1.5E-12 81.9 8.6 67 51-117 1-77 (77)
11 KOG1991 Nuclear transport rece 98.7 1E-05 2.3E-10 94.9 27.4 178 23-223 1-189 (1010)
12 KOG2081 Nuclear transport regu 98.4 0.00089 1.9E-08 75.2 34.2 131 49-188 2-132 (559)
13 KOG1992 Nuclear export recepto 98.0 0.0066 1.4E-07 70.7 28.6 162 48-223 22-193 (960)
14 KOG2023 Nuclear transport rece 97.9 0.0039 8.5E-08 70.9 24.2 123 33-163 13-139 (885)
15 KOG1993 Nuclear transport rece 97.4 0.003 6.5E-08 73.1 15.7 157 48-223 17-182 (978)
16 COG5656 SXM1 Importin, protein 97.2 0.021 4.5E-07 66.1 19.2 141 37-182 8-155 (970)
17 KOG1241 Karyopherin (importin) 96.9 0.018 3.8E-07 66.8 15.0 140 39-185 7-162 (859)
18 COG5657 CSE1 CAS/CSE protein i 96.5 0.16 3.4E-06 60.4 19.5 130 47-185 20-155 (947)
19 KOG2274 Predicted importin 9 [ 94.7 0.61 1.3E-05 55.6 14.7 136 40-184 11-159 (1005)
20 COG5215 KAP95 Karyopherin (imp 90.1 7.9 0.00017 44.4 15.0 107 48-162 22-143 (858)
21 PF10521 DUF2454: Protein of u 74.5 32 0.0007 36.7 11.6 173 136-377 106-278 (282)
22 PF03991 Prion_octapep: Copper 71.1 2.1 4.5E-05 20.1 0.6 7 10-16 2-8 (8)
23 PF03224 V-ATPase_H_N: V-ATPas 64.3 1E+02 0.0022 33.2 13.0 169 52-254 92-269 (312)
24 PF06738 DUF1212: Protein of u 56.6 1.4E+02 0.0031 29.6 11.6 103 20-134 59-162 (193)
25 COG1698 Uncharacterized protei 45.8 71 0.0015 27.8 6.0 40 21-60 8-48 (93)
26 PF01602 Adaptin_N: Adaptin N 40.3 1.4E+02 0.0031 34.4 9.8 90 75-180 90-179 (526)
27 cd00020 ARM Armadillo/beta-cat 39.7 1.4E+02 0.0031 26.0 7.8 107 64-181 8-119 (120)
28 PF00790 VHS: VHS domain; Int 37.9 1.8E+02 0.0038 27.4 8.4 97 35-135 10-114 (140)
29 PTZ00429 beta-adaptin; Provisi 36.9 6.9E+02 0.015 30.7 14.9 93 75-182 116-208 (746)
30 PF13646 HEAT_2: HEAT repeats; 33.0 1.9E+02 0.0042 24.0 7.1 84 35-134 1-87 (88)
31 PLN03076 ARF guanine nucleotid 32.2 1.5E+03 0.032 31.0 26.7 101 77-186 1150-1257(1780)
32 COG2966 Uncharacterized conser 30.4 5.4E+02 0.012 27.0 11.1 98 20-129 81-179 (250)
33 cd03565 VHS_Tom1 VHS domain fa 29.1 4.9E+02 0.011 24.6 9.8 60 73-134 48-110 (141)
34 PF12460 MMS19_C: RNAPII trans 28.3 8.9E+02 0.019 27.2 16.4 135 68-218 194-328 (415)
35 cd03561 VHS VHS domain family; 28.0 5E+02 0.011 24.1 9.9 59 75-135 48-108 (133)
36 KOG2171 Karyopherin (importin) 27.6 1.4E+03 0.03 29.2 35.0 118 48-173 406-537 (1075)
37 cd00197 VHS_ENTH_ANTH VHS, ENT 26.0 4.8E+02 0.01 23.3 11.7 57 75-135 48-111 (115)
38 PF11698 V-ATPase_H_C: V-ATPas 24.8 2.9E+02 0.0063 25.6 7.0 30 67-97 90-119 (119)
39 PF14500 MMS19_N: Dos2-interac 22.8 9.1E+02 0.02 25.4 14.1 105 76-185 52-156 (262)
40 KOG2122 Beta-catenin-binding p 22.7 1.9E+03 0.042 29.3 19.9 93 47-144 210-329 (2195)
41 PF06685 DUF1186: Protein of u 21.3 2.7E+02 0.0058 29.3 6.8 79 68-162 117-195 (249)
42 KOG2307 Low density lipoprotei 21.0 9E+02 0.02 28.4 11.1 71 48-118 196-282 (705)
43 PF09058 L27_1: L27_1; InterP 20.5 1.6E+02 0.0034 24.1 3.8 33 28-60 8-43 (64)
44 cd03567 VHS_GGA VHS domain fam 20.3 7.4E+02 0.016 23.4 11.1 58 75-134 49-111 (139)
No 1
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-113 Score=924.39 Aligned_cols=618 Identities=19% Similarity=0.274 Sum_probs=550.2
Q ss_pred hhhHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHhhhcCCChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCH
Q 004445 25 LAKLQSIMHSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTA 101 (753)
Q Consensus 25 ~~~l~~~~~~lE~~~~~ly~~~~---r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~ 101 (753)
|++| ++||.+|+.+|++.+ |.+||+.|.+|.++|+++++|+.||++++.||.++.|+++|.+.+.++- .+|.
T Consensus 1 m~sL----aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lpl 75 (1082)
T KOG1410|consen 1 MQSL----AQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLPL 75 (1082)
T ss_pred CccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCcH
Confidence 3577 999999999999876 8999999999999999999999999999999999999999999999974 7999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCC---chhHHHHHHHHHHcccCCchhHHHHHHHHH
Q 004445 102 DEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSS---DKEAFFSQVHQAVLGIHGVDTQFIGINFLE 178 (753)
Q Consensus 102 ~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~---~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~ 178 (753)
+||.+||+|++||+.++++++++||+..++|++|+|+|+||+|.++. +|+ .+.++.++++. ++.+||++|+.||+
T Consensus 76 ~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd-~v~~~~kfl~~-~~ve~~~igv~iLs 153 (1082)
T KOG1410|consen 76 EQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRD-PVDDVTKFLQM-DNVEHCIIGVQILS 153 (1082)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhh-hHHHHHHHhcc-CchHHHHHHHHHHH
Confidence 99999999999999999889999999999999999999999997653 465 88999999986 67999999999999
Q ss_pred HHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHhcccccc
Q 004445 179 SLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQ 258 (753)
Q Consensus 179 ~lv~Efs~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~ 258 (753)
++|+||+.... +.|..+|||.+.+|||+.|++||.+++.+|+...+..++.. .+.+++.++|.+..+||+|||+
T Consensus 154 qLvqemN~~~~---~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~---~q~~L~~~vL~L~l~Cl~FDfi 227 (1082)
T KOG1410|consen 154 QLVQEMNQADG---MDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDR---AQLGLLMQVLKLNLNCLNFDFI 227 (1082)
T ss_pred HHHHHhhCCCC---CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccH---hHhhHHHHHHHHHhhhcccccc
Confidence 99999999876 88999999999999999999999999999998774333322 2668999999999999999999
Q ss_pred cCCCCccchhhhcccccccccCCCCCCccccccCCcchhHhhcccchHHHHHHHHHHHHhhcccCCCCCCcccHHHHHHH
Q 004445 259 FDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKL 338 (753)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~c 338 (753)
|++.||+ +||.+|||+|++||..|.|++++++||++|.. +||+++..+++|
T Consensus 228 Gss~DEs------------------sed~ctVQIPTsWRs~f~d~stlqlfFdly~s-----------lp~~~S~~alsc 278 (1082)
T KOG1410|consen 228 GSSTDES------------------SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHS-----------LPPELSELALSC 278 (1082)
T ss_pred ccccccc------------------cccccceecCcHHHHHhcCchHHHHHHHHhcc-----------CCchhhHHHHHH
Confidence 9999998 99999999999999999999999999999987 378999999999
Q ss_pred HHHHhcccCccccCCChhhHHHHHHHHHHHHHHhcCCchhhHHHhhhCCCh-hhHHHHHHHHHHHHhhcChhhHHHhhhc
Q 004445 339 IVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSE-SEMLDGCRALLSIATVTTPFVFDRLLKS 417 (753)
Q Consensus 339 L~qLaSl~~~~f~~~~~~~r~~~l~~~l~~~~~il~~~~~~~~~~~~gl~~-~~~~e~cr~l~rL~~~~~~~~l~~~~~~ 417 (753)
|+|+||+||++|++. +|.+|+.+++.|++.|+++|. |+++ .|||||||+|+||++||++.++..+-++
T Consensus 279 lvqlASvRRsLFN~a---eRa~yl~~Lv~Gvk~il~np~--------~LsD~~nyHeFCRllaRlktNYQL~ELv~v~~Y 347 (1082)
T KOG1410|consen 279 LVQLASVRRSLFNGA---ERAKYLQHLVEGVKRILENPQ--------GLSDPANYHEFCRLLARLKTNYQLGELVKVECY 347 (1082)
T ss_pred HHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHhCCc--------CCCCcchHHHHHHHHHHHHhhhhhHhhhccCCc
Confidence 999999999999665 599999999999999999877 8887 8999999999999999965555544322
Q ss_pred cCchhhHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHhhccccccCCCCCCChHHhhhHHHHHHHHHHhhcc
Q 004445 418 IRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELK 497 (753)
Q Consensus 418 ~~~~~~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~s~~~~~~~~~~p~~l~~~~~~I~~~Yi~srL~ 497 (753)
..+ +.++++||+.+.+.|+|+++|++|||..|+|||.|+||+|++ .|+-+..|+|+|+++||.||++
T Consensus 348 ---~e~--------irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSVPyvk~~--~phlLd~y~PeIt~afi~SRl~ 414 (1082)
T KOG1410|consen 348 ---PEV--------IRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASVPYVKNT--EPHLLDTYCPEITKAFITSRLQ 414 (1082)
T ss_pred ---HHH--------HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcCCcccCC--ChHHHhhhcHHHHHHHHHHHhh
Confidence 122 357889999999999999999999999999999999999875 6898999999999999999999
Q ss_pred cccccccCCCCccchhhhcHHHHHHHHHHHHHHHHHcHhhhHHHHHHHHHHHHHHHhcCC--CCCCc--chhhh-hHHHH
Q 004445 498 VASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGR--GMIDP--TETLE-ELYSL 572 (753)
Q Consensus 498 ~~~~~~~~d~d~de~~~~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~ll~~~~~~l~~~~--~~~~~--~~~~E-~LhWL 572 (753)
.++..+.|+ -|++.||.+...+||+.++.+|||.|++||.+|+++|++..+.|++.. ++.++ ..+.| +|.||
T Consensus 415 sV~~ivrd~---~d~PLdd~~~~~q~le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wl 491 (1082)
T KOG1410|consen 415 SVEIIVRDG---LDDPLDDTGAVQQQLEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWL 491 (1082)
T ss_pred hhheecccC---CCCcchhhHHHHHHHHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhh
Confidence 999877554 234556678999999999999999999999999999999999998742 22232 46778 99999
Q ss_pred HHHHHhHhccCCCCcccccchhhhhhhhhhcccccChH-HHHHHHHHHHHHHhcCccccccCCCHHHHHHHHHHHHHHHH
Q 004445 573 LLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPV-VLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQ 651 (753)
Q Consensus 573 vli~G~~Lad~~~Ge~p~iP~~i~~~~~~~~~~~~d~v-v~L~~~v~~l~~~~l~~~~~~~~~SP~L~~a~lwfl~r~~~ 651 (753)
|+|+|+++++++.| .|.+ .+|.+ ++|+++|++++++. |.+.. ..+..+|+.|++|||++|||
T Consensus 492 v~lvgtvV~gk~t~-----------~Std----~~d~mDgEL~arvlql~nlm-dsr~~-~~~n~rle~ail~f~eqFRk 554 (1082)
T KOG1410|consen 492 VYLVGTVVGGKTTA-----------TSTD----EHDAMDGELSARVLQLVNLM-DSRLP-LKGNERLELAILHFLEQFRK 554 (1082)
T ss_pred HHHhHHHhcceecc-----------cccc----hhhhhhhHHHHHHHHHHHhh-hcccc-hhhhHHHHHHHHHHHHHHHH
Confidence 99999999998753 2222 45666 89999999999985 87665 33668999999999999999
Q ss_pred hhcCcccccccCCCCcCCCCCcccccchhhhHhHhhhcCCCChhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHh
Q 004445 652 TYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALV 731 (753)
Q Consensus 652 ~Yl~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~fG~~~~~~~vl~~lv~ki~~nL~~w~~e~~v~~~t~~~Ll~~L~ 731 (753)
+|++++.. + ++++|. ++.+.+|. +++..||+.+|+||.+|||+|++.++|++.|++ ||.+|+
T Consensus 555 ~YvgDQ~~-r-------sSkvY~--------rl~e~Lgi-~de~~~L~viv~KI~TNLK~w~~~e~vi~~tLs-lf~dLs 616 (1082)
T KOG1410|consen 555 AYVGDQIQ-R-------SSKVYA--------RLSEVLGI-TDESDVLGVIVGKILTNLKYWGRNEPVISLTLS-LFNDLS 616 (1082)
T ss_pred HHHHHHHH-H-------HHHHHH--------HHHHHhCC-CchHHHHHHHHHHHHhhcccccCCchHHHHHHH-HHHHHh
Confidence 99999944 4 566777 47899999 789999999999999999999999999999997 999999
Q ss_pred ccccccchhhhcccc
Q 004445 732 RRKNVCVHLVALVSS 746 (753)
Q Consensus 732 ~~~~~~~~l~~l~~~ 746 (753)
.||+.+|+|+|++.-
T Consensus 617 ~GY~~~kkL~kl~~V 631 (1082)
T KOG1410|consen 617 LGYSAVKKLVKLDAV 631 (1082)
T ss_pred hhHHHHHHHhcchhh
Confidence 999999999999973
No 2
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.98 E-value=2.8e-30 Score=280.10 Aligned_cols=345 Identities=13% Similarity=0.206 Sum_probs=258.0
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHH
Q 004445 33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110 (753)
Q Consensus 33 ~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ 110 (753)
+-|+++++.+|.|.+ +++||++|+.|++.|++|++..+||++|+.|..+|.|+++|.+.|+++|+.+|.++|.+||+|
T Consensus 14 allDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWkllp~~~r~GiRny 93 (1053)
T COG5101 14 ALLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWKLLPEGMRQGIRNY 93 (1053)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHHHHH
Confidence 668999999999977 588999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCC-----chHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchh---HHHHHHHHHHHHh
Q 004445 111 CLCFVMQHASSP-----EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDT---QFIGINFLESLVS 182 (753)
Q Consensus 111 ll~yl~~~~~~l-----~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~---~~~gl~iL~~lv~ 182 (753)
+++.+++++++. .++|.+++..+++.|+|++||.+ |++|++|+.+..+. +.+. .++.+++|++.|+
T Consensus 94 vv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~n----WP~FIpeli~~S~~--s~~vCeNnmivLklLsEEvF 167 (1053)
T COG5101 94 VVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRN----WPTFIPELINVSQI--SMEVCENNMIVLKLLSEEVF 167 (1053)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccc----cchhhHHHHhhccc--hHHHHhccHHHHHHhHHHHH
Confidence 999999998554 48999999999999999999995 99999999988873 5444 4799999999999
Q ss_pred hhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHhcccccccCCC
Q 004445 183 EFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTS 262 (753)
Q Consensus 183 Efs~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~ 262 (753)
+||... ++-.+.|..|.++.- .+++||.+|.++|+... +.++++++|+.+.++|.|.|.++
T Consensus 168 dfSaeq-----mTq~k~~~LkNqm~~-EF~qIF~lc~qiLE~~~-----------~~SLi~ATLesllrfl~wiPl~y-- 228 (1053)
T COG5101 168 DFSAEQ-----MTQVKKRLLKNQMKI-EFPQIFGLCKQILEYSR-----------DESLIEATLESLLRFLEWIPLDY-- 228 (1053)
T ss_pred hccHHH-----HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHHHhhCchhH--
Confidence 998751 122345666788854 59999999999998654 66899999999999999999987
Q ss_pred CccchhhhcccccccccCCCCCCccccccCCcchhHhhcccchHHHHHHHHHHHHhhcccCCCCCCcccHHHHHHHHHHH
Q 004445 263 GRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQL 342 (753)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~cL~qL 342 (753)
++++++++++.+.+.. .|+.+..+++||+++
T Consensus 229 -------------------------------------IfeTnIieLv~~~f~s------------~pd~r~~tl~CLtEi 259 (1053)
T COG5101 229 -------------------------------------IFETNIIELVLEHFNS------------MPDTRVATLSCLTEI 259 (1053)
T ss_pred -------------------------------------HHHHHHHHHHHHHhcc------------CCchhHHHHHHHHHH
Confidence 6788899999887765 378999999999999
Q ss_pred hcccCccccCCC-hhhHHHHHHHHHHHHHHhcCCc-hhhHHHhhhCC-ChhhHH-HHHHHHHHHHhhcChhhHHHhhhcc
Q 004445 343 CSLTGTVFPSDN-GKMQEHHLLQLLSGILEWVDPP-DVVAQAIESGK-SESEML-DGCRALLSIATVTTPFVFDRLLKSI 418 (753)
Q Consensus 343 aSl~~~~f~~~~-~~~r~~~l~~~l~~~~~il~~~-~~~~~~~~~gl-~~~~~~-e~cr~l~rL~~~~~~~~l~~~~~~~ 418 (753)
+++.+.--.+.+ ...-.-|++.++....-...|. +.+-..+.... .++.|+ ..+..|..+.+.| .+++++.
T Consensus 260 ~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~-----~~lLE~~ 334 (1053)
T COG5101 260 VDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVY-----ISLLEAR 334 (1053)
T ss_pred HhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHH-----HHHhcCh
Confidence 999752222211 1122345555555544222232 33444443211 134444 4444444444443 1223221
Q ss_pred CchhhHHHHHHHHHHHHHHHhhh-cccCCCchHHHHHHHHHHHHHhhccc
Q 004445 419 RPFGTLTLLSNLMCEVVKVLMMN-NTEEGTWSWEARDILLDTWTTLLVSL 467 (753)
Q Consensus 419 ~~~~~l~~L~~Lt~~~i~~~~~~-~~~~~~~~~es~~~LL~~W~~lv~s~ 467 (753)
...+.+. -.+.+.+. +..++ .|-|..+|+.|.++|.++
T Consensus 335 -------e~~e~ll-nah~YLiqiSrIne---reiFkt~leyW~klVadL 373 (1053)
T COG5101 335 -------EMAENLL-NAHGYLIQISRINE---REIFKTALEYWNKLVADL 373 (1053)
T ss_pred -------hHHHHHH-HHHHHhhhhhhccH---HHHHHHHHHHHHHHHHHH
Confidence 1112221 12222222 22222 588999999999999874
No 3
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.7e-22 Score=236.11 Aligned_cols=346 Identities=16% Similarity=0.192 Sum_probs=250.8
Q ss_pred HHHHHHHHHhhC-CCC--HHHHHHHHHhhhcCCChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHH
Q 004445 33 HSIEIACSSIQM-HVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIG 109 (753)
Q Consensus 33 ~~lE~~~~~ly~-~~~--r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~ 109 (753)
+-++.+...+|. +.+ |.+|++++.+|+..|+.|..|..||+.|+++.++|||++.|++.|..+|+.+|..+|.++|+
T Consensus 11 ~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~glk~ 90 (1041)
T KOG2020|consen 11 ELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNSLPVEERVGLKN 90 (1041)
T ss_pred HHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcccCCccccHHHHH
Confidence 446667776665 444 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCC-----chHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCC-chhHHHHHHHHHHHHhh
Q 004445 110 FCLCFVMQHASSP-----EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHG-VDTQFIGINFLESLVSE 183 (753)
Q Consensus 110 ~ll~yl~~~~~~l-----~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s-~~~~~~gl~iL~~lv~E 183 (753)
|+...+....++. .+++++|++.+++.|+||.|+.. |++|+.|+.+....+.+ .+..++.+++|++.|+.
T Consensus 91 ~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~----wp~~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf~ 166 (1041)
T KOG2020|consen 91 YVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAI----WPTFIPDLAQSSKTSETVCELSMIILLLLSEEVFD 166 (1041)
T ss_pred HHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhh----cchhhhhHHHHhhcCcccchHHHHHHHHHHHHHhc
Confidence 9999999988666 58999999999999999999984 99999999999884222 25567899999999999
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHhcccccccCCCC
Q 004445 184 FSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSG 263 (753)
Q Consensus 184 fs~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d 263 (753)
|+....+ -.++.-.+.+++. .+..||++|..++.++. .. ++.++|..+.++++|.+.++.
T Consensus 167 ~ss~~~~-----q~~~~il~~~~~~-~f~~i~~l~~~~~~~a~-----------~~-~~~atl~tl~~fl~wip~~~I-- 226 (1041)
T KOG2020|consen 167 FSSSELT-----QQKIIILKNLLEN-EFQQIFTLCSYIKEKAN-----------SE-LLSATLETLLRFLEWIPLGYI-- 226 (1041)
T ss_pred ccchHHH-----hhhHHHHHHHhhH-HHHHHHHHHHHHHhhhh-----------hH-HHHHHHHHHHHHhhcccHHHH--
Confidence 9886431 1234445666655 69999999999776543 34 999999999999999999883
Q ss_pred ccchhhhcccccccccCCCCCCccccccCCcchhHhhcccchHHHHHHHHHHHHhhcccCCCCCCcccHHHHHHHHHHHh
Q 004445 264 RKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLC 343 (753)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~cL~qLa 343 (753)
.+.+.+..+...+.. .+.++..+++||.++.
T Consensus 227 -------------------------------------~~tn~l~~~l~~~ln------------~~~~r~~al~CL~ei~ 257 (1041)
T KOG2020|consen 227 -------------------------------------FETNILELLLNKFLN------------APELRNNALSCLTELL 257 (1041)
T ss_pred -------------------------------------HHhhhHHHHHHhccc------------hHHHHHHHHHHHHHHH
Confidence 444556666655543 3789999999999999
Q ss_pred cccCccccCCChhhHHHHHHHHHHHHHHhcCCchhhHHHhhhCCCh-h-hHH-HHHHHHHHHHhhcChhhHHHhhhccCc
Q 004445 344 SLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSE-S-EML-DGCRALLSIATVTTPFVFDRLLKSIRP 420 (753)
Q Consensus 344 Sl~~~~f~~~~~~~r~~~l~~~l~~~~~il~~~~~~~~~~~~gl~~-~-~~~-e~cr~l~rL~~~~~~~~l~~~~~~~~~ 420 (753)
|..+..+.... ..++...+..+. .+.....+...+..+... + .|+ .+|..|..+...| ..++++.
T Consensus 258 s~~~~~~~~~~----~~~~~~~~~~l~-~i~~~l~~~~~~~~~~~~dq~~fi~~l~~~l~~f~~~~-----~~lle~~-- 325 (1041)
T KOG2020|consen 258 SRKRSIYERKT----VPMFNLTIYQLR-SIPQDLDIPEVYSSLSDEDQDSFIEKLAQFLSLFFEQH-----IALLESS-- 325 (1041)
T ss_pred hccccchhHHh----HHHHHHHHHHHH-HhhhhhchhhhhhcccHhHHHHHHHHHHHHHHHHHHHH-----HHHHcCc--
Confidence 99887544322 345555555543 221111133334434433 3 444 3444444444333 2333321
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHhhcccccc
Q 004445 421 FGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDST 470 (753)
Q Consensus 421 ~~~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~s~~~~ 470 (753)
..-.+.+-..+..++..++++ ..+.+..+|+.|..++.+..|.
T Consensus 326 ~~~~~~~~~~~~~li~i~~~~-------~se~~~~~ld~W~~lv~~l~~~ 368 (1041)
T KOG2020|consen 326 LSQRPVLLEALLELILISTIE-------PSEIFKICLDYWNKLVADLYYN 368 (1041)
T ss_pred hhhhhHHHHHHHHHHHHhccC-------chhHHHHHHHHHHHHHHhhhcc
Confidence 000111112222344444443 2588899999999999987764
No 4
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.6e-20 Score=202.29 Aligned_cols=429 Identities=55% Similarity=0.851 Sum_probs=325.8
Q ss_pred ccCCcchhHhhcccchHHHHHHHHHHHHhhcccCCCCCCcccHHHHHHHHHHHhcccC-ccccCCChhhHHHHHHHHHHH
Q 004445 290 VQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTG-TVFPSDNGKMQEHHLLQLLSG 368 (753)
Q Consensus 290 ~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~cL~qLaSl~~-~~f~~~~~~~r~~~l~~~l~~ 368 (753)
++|..+|-+.+++.+.+.|+-++|...++++...+.|+++++....+...+++|+..| -+|+......|.+.....++|
T Consensus 1 v~~y~s~~d~Ll~s~~~~Wltnl~~~~~~~f~~~Gf~~d~~V~v~n~~lq~hl~~~~ga~i~~an~V~~R~eee~~~l~~ 80 (748)
T KOG4541|consen 1 VKPYASWCDVLLSSSHVGWLTNLYSSVRQKFDLEGFWLDCPVAVSNRKLQVHLCSLAGAEIFPANNVQMRDEEELLLLTG 80 (748)
T ss_pred CcchHHHHHHHHhcCCcchHHHHHhhHHHHHhhhhhHhhCcHHHHHHHHHHHhcccchhhcccccchhcccHHHHHhhcC
Confidence 4678899999999999999999999999998888889999988888888899999998 689888877899999999999
Q ss_pred HHHhcCC-chhhHHHhhhCCChhhHHHHHHHHHHHHhhcChhhHHHhhhccCchhhHHHHHHHHHHHHH-------HHhh
Q 004445 369 ILEWVDP-PDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVK-------VLMM 440 (753)
Q Consensus 369 ~~~il~~-~~~~~~~~~~gl~~~~~~e~cr~l~rL~~~~~~~~l~~~~~~~~~~~~l~~L~~Lt~~~i~-------~~~~ 440 (753)
.-+..++ |+.+......|....++...||.|....+....-.+...+.+..++|....++.+.-...+ .-+-
T Consensus 81 ~edd~D~s~D~~~~~~~~gr~gae~c~~~~~lle~~~t~lh~~~~~~~~~la~~GS~t~~s~~l~~~~eDqHWLmLVl~~ 160 (748)
T KOG4541|consen 81 VEDDIDPSPDVISKEIEEGRSGAEMCDGCRALLEIGTTTLHVVFDQLLRSLAPFGSLTLLSMLLGEVVEDQHWLMLVLMA 160 (748)
T ss_pred CCccCCcchhHHHHHHhcCchHHHHHHHHHHHHHhcccccHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876 5555544555666678888898776655433222444444443445555444443332222 2223
Q ss_pred hcccCCCchHHHHHHHHHHHHHhhcc-ccccCCCCCCChHHhhhHHHHHHHHHHhhcccccccccCCCCccchhhhcHHH
Q 004445 441 NNTEEGTWSWEARDILLDTWTTLLVS-LDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISA 519 (753)
Q Consensus 441 ~~~~~~~~~~es~~~LL~~W~~lv~s-~~~~~~~~~~p~~l~~~~~~I~~~Yi~srL~~~~~~~~~d~d~de~~~~d~~~ 519 (753)
.+..|++|..++.+.++..|+.+-++ ++..+++.=.|++.++.+..+++--+++-+.-+..++.-++ ++++.+....
T Consensus 161 ~~~dee~~~~~~~~~~~~~yt~~htsk~D~s~~~q~L~~~ge~~a~s~~~y~~e~d~~I~~~sa~~~~--~~~e~~~v~a 238 (748)
T KOG4541|consen 161 NSTDEETWSYEARDILLDTYTTLHTSKMDGSGGNQWLPPEGEHAAASLFSYIVESDLKIASASATTED--DADELASVSA 238 (748)
T ss_pred hccccccCCccCCCchHhhhhhhhcccccCCCcccccCCcccchhhhhhhhhhhcchHHHHhHHHhhh--hHHHHHHHHH
Confidence 34667899999999999999999888 77766655578888888888888666766554444442222 2233333456
Q ss_pred HHHHHHHHHHHHHH--cHhhhHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHHhHhccC--CCCcccccchhh
Q 004445 520 MDERLSSYALIARA--AIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADE--GEGEIPVVPNAI 595 (753)
Q Consensus 520 ~~eqL~~ia~l~R~--~~~~t~~lL~~ll~~~~~~l~~~~~~~~~~~~~E~LhWLvli~G~~Lad~--~~Ge~p~iP~~i 595 (753)
..++|-+-+.++|. .-+.+.+.+..++.+..+++.++.+..+|....|..+-+.+|+|++|++- ++||+.+.|..+
T Consensus 239 ~~~~l~Sp~l~~~l~rfl~a~~~~~~~~~~~~y~~~s~~~~tv~p~~te~s~~~~~~ii~kVla~lvn~~sE~~L~~Da~ 318 (748)
T KOG4541|consen 239 MDERLGSPALIARLARFLDATIPFLAKLFSDHYARLSQGRGTVDPTETEESVYSLLLIIGKVLADLVNGESETALVPDAL 318 (748)
T ss_pred HHHhccCHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCCCCCcccchhhHHHHHHHHHHHHHHHhcccchhhhhHHHH
Confidence 66777776666652 36778899999999999999999888888888888788888999999998 788999999999
Q ss_pred hhhhhhhcccccChHHHHHHHHHHHHHHhcCccccccCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCCcCCCCCccc
Q 004445 596 QTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQH 675 (753)
Q Consensus 596 ~~~~~~~~~~~~d~vv~L~~~v~~l~~~~l~~~~~~~~~SP~L~~a~lwfl~r~~~~Yl~~~~~~~~~~~~~~~~~~~~~ 675 (753)
+-+.....+++.+|++.++.++.++.+++.+..++-..+||.++++++|+|-+|.-+|+.-+++...+ ..
T Consensus 319 q~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~i~s~p~~~~lmkaLvl~gfa~~d~e~~~n~~----------~~ 388 (748)
T KOG4541|consen 319 QSLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLSIFSPPLMEALMKALVLWGFAYLDLEEECNLG----------SN 388 (748)
T ss_pred HHHHHHHHHhccCCeeeccHHHHHHHHHHhccCCcccccCchHHHHHHHHHHHHHHHHhhHHHHHHHH----------Hh
Confidence 88776555556789999999999999998887777667999999999999999999999866443221 12
Q ss_pred ccchhhhHhHhhhcCCCChhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHh
Q 004445 676 QSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALV 731 (753)
Q Consensus 676 ~s~~~~~~l~~~fG~~~~~~~vl~~lv~ki~~nL~~w~~e~~v~~~t~~~Ll~~L~ 731 (753)
+-++.+.++..+|..+++|..+.+++++--.++..+++++.+.+.-..+ .|.+..
T Consensus 389 ~LqpL~~Rf~~~~nq~~q~~~~~~Ii~~l~~~~g~a~a~q~d~~~~Lf~-fL~~~~ 443 (748)
T KOG4541|consen 389 KLQPLPSRFFTYFNQHNQGKFVLDIIVRLSLTSGTAYAGQKDLQRSLFQ-FLVLSA 443 (748)
T ss_pred hccccHHHHHHHhcccchhhHHHHHHHHHHHhccccccccchhHHHHHH-HHHHHH
Confidence 2224466788999998999999999999999999999999999755554 454443
No 5
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.3e-21 Score=210.75 Aligned_cols=276 Identities=16% Similarity=0.049 Sum_probs=211.1
Q ss_pred chHHHHHHHHHH----HHH-hhccccccCCCCCCChHHhhhHHHHHHHHHHhhcccccccc---------cCCCCccc--
Q 004445 448 WSWEARDILLDT----WTT-LLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASA---------MDDNGEFN-- 511 (753)
Q Consensus 448 ~~~es~~~LL~~----W~~-lv~s~~~~~~~~~~p~~l~~~~~~I~~~Yi~srL~~~~~~~---------~~d~d~de-- 511 (753)
.++++++.||+- |.. +++++.---.. .--+..|+.+|++.|+++|+.++.+.. .++++.++
T Consensus 3 ~y~s~~d~Ll~s~~~~Wltnl~~~~~~~f~~---~Gf~~d~~V~v~n~~lq~hl~~~~ga~i~~an~V~~R~eee~~~l~ 79 (748)
T KOG4541|consen 3 PYASWCDVLLSSSHVGWLTNLYSSVRQKFDL---EGFWLDCPVAVSNRKLQVHLCSLAGAEIFPANNVQMRDEEELLLLT 79 (748)
T ss_pred chHHHHHHHHhcCCcchHHHHHhhHHHHHhh---hhhHhhCcHHHHHHHHHHHhcccchhhcccccchhcccHHHHHhhc
Confidence 467889999998 988 77763210000 123457899999999999999887521 12222222
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHcHhhhHHHHHHHHHHHHHHHhcC----------CCCCC-----cchhhhhHHHHHHHH
Q 004445 512 YLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQG----------RGMID-----PTETLEELYSLLLIT 576 (753)
Q Consensus 512 ~~~~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~ll~~~~~~l~~~----------~~~~~-----~~~~~E~LhWLvli~ 576 (753)
..+||.+-+.|++.....+||...+.+.+.. .+++.+..+++.. .|+.. ...++||.|||+++.
T Consensus 80 ~~edd~D~s~D~~~~~~~~gr~gae~c~~~~-~lle~~~t~lh~~~~~~~~~la~~GS~t~~s~~l~~~~eDqHWLmLVl 158 (748)
T KOG4541|consen 80 GVEDDIDPSPDVISKEIEEGRSGAEMCDGCR-ALLEIGTTTLHVVFDQLLRSLAPFGSLTLLSMLLGEVVEDQHWLMLVL 158 (748)
T ss_pred CCCccCCcchhHHHHHHhcCchHHHHHHHHH-HHHHhcccccHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 1245556688999999999999999999988 7999888888731 13221 157999999999999
Q ss_pred HhHhccCCCCcccccchhhhhhhhhh--------------cc------------cccChHHHHHHHHHHHHHHhcCc--c
Q 004445 577 GHVLADEGEGEIPVVPNAIQTHFVDT--------------IE------------AAKHPVVLLCGSIIKFAEWSLDP--E 628 (753)
Q Consensus 577 G~~Lad~~~Ge~p~iP~~i~~~~~~~--------------~~------------~~~d~vv~L~~~v~~l~~~~l~~--~ 628 (753)
|+.++|+..|+.|.+|..+..|+..+ .+ -+.|+++.+.++.+++...+.+. .
T Consensus 159 ~~~~~dee~~~~~~~~~~~~~yt~~htsk~D~s~~~q~L~~~ge~~a~s~~~y~~e~d~~I~~~sa~~~~~~~e~~~v~a 238 (748)
T KOG4541|consen 159 MANSTDEETWSYEARDILLDTYTTLHTSKMDGSGGNQWLPPEGEHAAASLFSYIVESDLKIASASATTEDDADELASVSA 238 (748)
T ss_pred HHhccccccCCccCCCchHhhhhhhhcccccCCCcccccCCcccchhhhhhhhhhhcchHHHHhHHHhhhhHHHHHHHHH
Confidence 99999999999999999999886421 00 14588899999999998876432 2
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCCcCCCCCcccccchhhhHhHhhhcCCCCh-hhHHHHHHHHHHH
Q 004445 629 ARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG-KPVLDIIVRISMT 707 (753)
Q Consensus 629 ~~~~~~SP~L~~a~lwfl~r~~~~Yl~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~fG~~~~~-~~vl~~lv~ki~~ 707 (753)
+..+++||+|...+.||+.+|.++|.....+ + |+++|+ .-..++|.++.+ .|++.++++|++.
T Consensus 239 ~~~~l~Sp~l~~~l~rfl~a~~~~~~~~~~~-~-----------y~~~s~----~~~tv~p~~te~s~~~~~~ii~kVla 302 (748)
T KOG4541|consen 239 MDERLGSPALIARLARFLDATIPFLAKLFSD-H-----------YARLSQ----GRGTVDPTETEESVYSLLLIIGKVLA 302 (748)
T ss_pred HHHhccCHHHHHHHHHHHHhhhhHHHHHhHH-H-----------HHHhcC----CCCCCCcccchhhHHHHHHHHHHHHH
Confidence 2334699999999999999999999987744 3 666553 345678887766 6999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHhccccccchhhhcc
Q 004445 708 TLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALV 744 (753)
Q Consensus 708 nL~~w~~e~~v~~~t~~~Ll~~L~~~~~~~~~l~~l~ 744 (753)
||.+|.+|++++.++++ ++-.||.+++....++..+
T Consensus 303 ~lvn~~sE~~L~~Da~q-~l~~lVe~~~~~~vvv~~e 338 (748)
T KOG4541|consen 303 DLVNGESETALVPDALQ-SLFVLVEEANNHPVVVLSE 338 (748)
T ss_pred HHhcccchhhhhHHHHH-HHHHHHHHhccCCeeeccH
Confidence 99999999999999997 8999999988776555443
No 6
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.8e-11 Score=137.48 Aligned_cols=264 Identities=11% Similarity=0.066 Sum_probs=204.5
Q ss_pred HHHHHHHHHHhhCCC-C---HHHHHHHHHhhhcCCChHHHHHHHhccC-CchhHHHHHHHHHHHHHhhccccCCHHHHHH
Q 004445 32 MHSIEIACSSIQMHV-N---PAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWSFLTADEKKS 106 (753)
Q Consensus 32 ~~~lE~~~~~ly~~~-~---r~~Ae~~L~~f~~s~~~~~~c~~ILe~S-~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~ 106 (753)
|+.+|+|+.....|. + +++|-..+.+++.+|++|+.|-.+|-++ +++.++|+++++|.+.+....+..+..+..-
T Consensus 2 mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elql 81 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQL 81 (980)
T ss_pred chHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHH
Confidence 467899999988873 3 8999999999999999999999999777 8899999999999999988878899999999
Q ss_pred HHHHHHHHHHhcC-----CCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHHHH
Q 004445 107 LIGFCLCFVMQHA-----SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLV 181 (753)
Q Consensus 107 lr~~ll~yl~~~~-----~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv 181 (753)
+|.-+..|+.... ..+|+|+++|+.++++-+.=..+++ .|++|+.++...+.-....+....=|++|.++=
T Consensus 82 vR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~----~WnsfF~dlmsv~~~~s~~~~~dfflkvllaId 157 (980)
T KOG2021|consen 82 VRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPD----CWNSFFDDLMSVFQVDSAISGLDFFLKVLLAID 157 (980)
T ss_pred HHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHhcccchhhHHHHHHHHHHhh
Confidence 9999998876542 2468999999999999999999888 499999999988763111223556678888887
Q ss_pred hhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHhcccccccCC
Q 004445 182 SEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDT 261 (753)
Q Consensus 182 ~Efs~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~ 261 (753)
.|.....--..--...+.-..|-.+|+++.++|-..-.++++.-.+. -.+.+...+|+|.-+..||+=++-
T Consensus 158 sEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~--------~npgl~~~cLdc~g~fVSWIdInL- 228 (980)
T KOG2021|consen 158 SEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENI--------VNPGLINSCLDCIGSFVSWIDINL- 228 (980)
T ss_pred hHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhcc--------CCchHHHHHHHHHHHHhhhhhhhh-
Confidence 77765411000112234456899999999999988888888754321 145789999999999999997764
Q ss_pred CCccchhhhcccccccccCCCCCCccccccCCcchhHhhcccchHHHHHHHHHHHHhhcccCCCCCCcccHHHHHHHHHH
Q 004445 262 SGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQ 341 (753)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~cL~q 341 (753)
+.+...+++++.+-.. ..++..|-.|+.+
T Consensus 229 --------------------------------------IaNd~f~nLLy~fl~i-------------eelR~aac~cila 257 (980)
T KOG2021|consen 229 --------------------------------------IANDYFLNLLYKFLNI-------------EELRIAACNCILA 257 (980)
T ss_pred --------------------------------------hhchhHHHHHHHHHhH-------------HHHHHHHHHHHHH
Confidence 4456678888876653 5688899999999
Q ss_pred HhcccCccccCCChhhHHHHHHHH
Q 004445 342 LCSLTGTVFPSDNGKMQEHHLLQL 365 (753)
Q Consensus 342 LaSl~~~~f~~~~~~~r~~~l~~~ 365 (753)
+.|-+- .+ .++...+..+
T Consensus 258 iVsKkM---kP---~dKL~lln~L 275 (980)
T KOG2021|consen 258 IVSKKM---KP---MDKLALLNML 275 (980)
T ss_pred HHhcCC---Ch---hHHHHHHHHH
Confidence 999763 22 2456555544
No 7
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.1e-08 Score=117.76 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=129.6
Q ss_pred CChhhHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHhhhcCCChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccC
Q 004445 23 ADLAKLQSIMHSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFL 99 (753)
Q Consensus 23 md~~~l~~~~~~lE~~~~~ly~~~~---r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l 99 (753)
||...+ +++|.+...+|.+++ .+.++++|.+.+.+|++|+..+.+|+..+++.+|||+|.+|...|.++|...
T Consensus 1 md~~~I----a~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~ 76 (982)
T KOG2022|consen 1 MDSDLI----ATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEEC 76 (982)
T ss_pred CCchHH----HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccC
Confidence 455566 999999999999864 6889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCc-----hhHHHHH
Q 004445 100 TADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGV-----DTQFIGI 174 (753)
Q Consensus 100 ~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~-----~~~~~gl 174 (753)
|++++.+|+.-++.-+.... ..++.|.+|++-.+|..+=.-=+| .|+.-+.++.+.++.+.+| -+|.+-+
T Consensus 77 ~~~~~~qL~~klf~~l~~~~-g~~~lVl~kl~~sLasl~l~~~~d----~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~L 151 (982)
T KOG2022|consen 77 PANEAVQLKLKLFLILSRFA-GGPKLVLNKLCASLASLILYMVPD----LWPTAIQDVIPTLQGQASPLVLADINCEILL 151 (982)
T ss_pred ChhHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHccc----cCCchHHHHHHHHhcccCccccchhhHHHHH
Confidence 99999999999999888776 569999999998888776444444 5888999999999865554 3445666
Q ss_pred HHHHHHHhhhCC
Q 004445 175 NFLESLVSEFSP 186 (753)
Q Consensus 175 ~iL~~lv~Efs~ 186 (753)
..|+.+-.||..
T Consensus 152 e~Ls~~p~e~q~ 163 (982)
T KOG2022|consen 152 EVLSFMPAEFQH 163 (982)
T ss_pred HHhccCcHhhhh
Confidence 666655556643
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=5.2e-07 Score=107.32 Aligned_cols=182 Identities=17% Similarity=0.139 Sum_probs=146.6
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHH
Q 004445 33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110 (753)
Q Consensus 33 ~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ 110 (753)
++|+++...|..|.| |++||+.+...-..+.......+|+.++.+|.++=+|+-.+|+++++.|+.++.+.|..||.-
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~ 83 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSS 83 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 678999999999976 999999999555445588889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHHHHhhhCCCCCC
Q 004445 111 CLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSS 190 (753)
Q Consensus 111 ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~Efs~~~ss 190 (753)
||.-+.+- ..+-|+.|++.++|.|.|..-++ .|+..++-+.+.+++ .++..+..++.||+.+..-|+...+
T Consensus 84 lL~~~~~E---~~~~vr~k~~dviAeia~~~l~e----~WPell~~L~q~~~S-~~~~~rE~al~il~s~~~~~~~~~~- 154 (1075)
T KOG2171|consen 84 LLEIIQSE---TEPSVRHKLADVIAEIARNDLPE----KWPELLQFLFQSTKS-PNPSLRESALLILSSLPETFGNTLQ- 154 (1075)
T ss_pred HHHHHHhc---cchHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhcC-CCcchhHHHHHHHHhhhhhhccccc-
Confidence 99987764 57899999999999999988766 599888888888886 6889999999999999999987543
Q ss_pred CCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 004445 191 AMGLPREFHEQCRISLELDYLKTFYCWARDAALSVT 226 (753)
Q Consensus 191 ~~gl~~~~Hrk~k~sFe~~~L~~If~l~~~~L~~~~ 226 (753)
+.=.++++--.+.+.|.... |=-.+++.+..+.
T Consensus 155 --~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~ 187 (1075)
T KOG2171|consen 155 --PHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFA 187 (1075)
T ss_pred --hhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHH
Confidence 22234444444444444444 4444444444433
No 9
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.98 E-value=5e-09 Score=100.19 Aligned_cols=147 Identities=16% Similarity=0.215 Sum_probs=117.8
Q ss_pred chHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHHHHhhhCCC-CCCCCCCCHHHHHH
Q 004445 123 EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPS-TSSAMGLPREFHEQ 201 (753)
Q Consensus 123 ~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~Efs~~-~ss~~gl~~~~Hrk 201 (753)
|+||++|++++++.|.|+.||+. |++|++++.+.+++ ++.+...++.+|..+.+|+... +. ..+.+.++.
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~----Wp~~l~~l~~~~~~--~~~~~~~~L~iL~~l~eEi~~~~~~---~~~~~r~~~ 71 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQ----WPDFLEDLLQLLQS--SPQHLELVLRILRILPEEITDFRRS---SLSQERRRE 71 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTT----STTHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHTSHCC---HSHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhh----CchHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHhhhch---hhhHHHHHH
Confidence 68999999999999999999884 99999999999984 7889999999999999999763 22 345666777
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHhcccccccCCCCccchhhhcccccccccCC
Q 004445 202 CRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSS 281 (753)
Q Consensus 202 ~k~sFe~~~L~~If~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~~~~~~~~~~~~~~~~~ 281 (753)
.+..++.. ...||.+..+++.+.... ....+...+|+++.++++|.....
T Consensus 72 l~~~l~~~-~~~i~~~l~~~l~~~~~~--------~~~~~~~~~L~~l~s~i~~~~~~~--------------------- 121 (148)
T PF08389_consen 72 LKDALRSN-SPDILEILSQILSQSSSE--------ANEELVKAALKCLKSWISWIPIEL--------------------- 121 (148)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHCHC--------CHHHHHHHHHHHHHHHTTTS-HHH---------------------
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhhccc--------cHHHHHHHHHHHHHHHHHhCCHHH---------------------
Confidence 78888665 888888888887754421 126789999999999999887765
Q ss_pred CCCCccccccCCcchhHhhcccchHHHHHHHHHHHHhhcccCCCCCCcccHHHHHHHH
Q 004445 282 SKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLI 339 (753)
Q Consensus 282 ~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~cL 339 (753)
+.+.++++++|++.. ++.+...|.+||
T Consensus 122 ------------------i~~~~~l~~~~~~l~-------------~~~~~~~A~~cl 148 (148)
T PF08389_consen 122 ------------------IINSNLLNLIFQLLQ-------------SPELREAAAECL 148 (148)
T ss_dssp ------------------HHSSSHHHHHHHHTT-------------SCCCHHHHHHHH
T ss_pred ------------------hccHHHHHHHHHHcC-------------CHHHHHHHHHhC
Confidence 456678888887662 377899999997
No 10
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.70 E-value=6.9e-08 Score=81.90 Aligned_cols=67 Identities=27% Similarity=0.352 Sum_probs=63.0
Q ss_pred HHHHHHhhhcC-CChHHHHHHHh-ccCCchhHHHHHHHHHHHHHhhccc--------cCCHHHHHHHHHHHHHHHHh
Q 004445 51 AEATILGLCQS-PQPYKACQFIL-ENSQVANARFQAAAAIRDAAMREWS--------FLTADEKKSLIGFCLCFVMQ 117 (753)
Q Consensus 51 Ae~~L~~f~~s-~~~~~~c~~IL-e~S~~~y~~f~A~~~L~~~i~~~W~--------~l~~~~r~~lr~~ll~yl~~ 117 (753)
||+.|.+|++. |+.+..|..|+ +.+.+++++++|+..|++.|.++|. .+|+++|..||++|++.+.+
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~~ 77 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLLQ 77 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHcC
Confidence 89999999999 99999999999 6666899999999999999999999 99999999999999998863
No 11
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1e-05 Score=94.93 Aligned_cols=178 Identities=13% Similarity=0.198 Sum_probs=138.1
Q ss_pred CChhhHHHHHHHHHHHHHHhhCCCC-HHHHHHHHHhhhcCCChHHHHHHHhccCCchhH-HHHHHHHHHHHHhhcccc--
Q 004445 23 ADLAKLQSIMHSIEIACSSIQMHVN-PAAAEATILGLCQSPQPYKACQFILENSQVANA-RFQAAAAIRDAAMREWSF-- 98 (753)
Q Consensus 23 md~~~l~~~~~~lE~~~~~ly~~~~-r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~~~y~-~f~A~~~L~~~i~~~W~~-- 98 (753)
||.+.+ ++.+-..+-.+++ |+.||+.|.++.+.|.-...|-.|.-....+.. +--|+--+++.|++.|..
T Consensus 1 md~~~l------~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~ 74 (1010)
T KOG1991|consen 1 MDLQSL------LQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE 74 (1010)
T ss_pred CChHHH------HHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC
Confidence 777777 4444455555444 999999999999999999999999988877754 888888999999999976
Q ss_pred -------CCHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHH
Q 004445 99 -------LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQF 171 (753)
Q Consensus 99 -------l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~ 171 (753)
+++++|.-+|+-++.++.+. |..+|.++..++-.|+|...+. .|+.+++-+..++++ +...+..
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv~~----p~~iRvql~~~l~~Ii~~D~p~----~Wp~l~d~i~~~Lqs-~~~~~vy 145 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIVQV----PELIRVQLTACLNTIIKADYPE----QWPGLLDKIKNLLQS-QDANHVY 145 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHHhC----chHHHHHHHHHHHHHHhcCCcc----cchhHHHHHHHHhcC-cchhhHH
Confidence 48899999999999999865 6889999999999999998875 599999999999986 4567778
Q ss_pred HHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 004445 172 IGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAAL 223 (753)
Q Consensus 172 ~gl~iL~~lv~Efs~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If~l~~~~L~ 223 (753)
-||-.|..|+.-+--.+. +..-..++ .+ ++.++.|.+....+|.
T Consensus 146 ~aLl~l~qL~k~ye~k~~---eeR~~l~~----~v-~~~fP~il~~~~~ll~ 189 (1010)
T KOG1991|consen 146 GALLCLYQLFKTYEWKKD---EERQPLGE----AV-EELFPDILQIFNGLLS 189 (1010)
T ss_pred HHHHHHHHHHHHHhhccc---cccccHHH----HH-HHHHHHHHHHHHhhcc
Confidence 899999999875542110 10111222 44 3347777777766665
No 12
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.00089 Score=75.15 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=104.1
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHhcCCCCchHHHH
Q 004445 49 AAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQA 128 (753)
Q Consensus 49 ~~Ae~~L~~f~~s~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~ 128 (753)
..|-++|.+||.++++|..|..||..-...++..||+++++..+.+....+|+.+-..+|+-++..+..-. +.++-++.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~-~~~~~i~t 80 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELH-DHPDVIRT 80 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHH-hCCchHHH
Confidence 36899999999999999999999998888899999999999999999999999999999998888777665 44557888
Q ss_pred HHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHHHHhhhCCCC
Q 004445 129 KISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPST 188 (753)
Q Consensus 129 ~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~Efs~~~ 188 (753)
+++-.+|.+.=+ . .+|.+-+.|+.+..++ .+.....-+.+|..+-+|+...+
T Consensus 81 QL~vavA~Lal~----~--~~W~n~I~e~v~~~~~--~~~~~~~lLeiL~VlPEE~~~~~ 132 (559)
T KOG2081|consen 81 QLAVAVAALALH----M--PEWVNPIFELVRALSN--KHPAVPILLEILKVLPEETRDIR 132 (559)
T ss_pred HHHHHHHHHHHH----h--HhhcchHHHHHHHhhc--CCccHHHHHHHHHhCcHhhcchh
Confidence 887777765311 1 1355566777776663 33335677888888888887754
No 13
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.0066 Score=70.74 Aligned_cols=162 Identities=13% Similarity=0.130 Sum_probs=119.7
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHhccCC-chhHHHHHHHHHHHHHhhccc-------cCCHHHHHHHHHHHHHHHHhcC
Q 004445 48 PAAAEATILGLCQSPQPYKACQFILENSQ-VANARFQAAAAIRDAAMREWS-------FLTADEKKSLIGFCLCFVMQHA 119 (753)
Q Consensus 48 r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~-~~y~~f~A~~~L~~~i~~~W~-------~l~~~~r~~lr~~ll~yl~~~~ 119 (753)
|+-||+.|.+...++..--..-.++.+++ .+..+.-|+..+++.+.|+|. .+..++|..||.-++....+.
T Consensus 22 rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s- 100 (960)
T KOG1992|consen 22 RKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSS- 100 (960)
T ss_pred CchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcC-
Confidence 89999999999988777667778888887 668999999999999999994 477789999999999987754
Q ss_pred CCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHH-HHhhhCCC-CCCCCCCCHH
Q 004445 120 SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLES-LVSEFSPS-TSSAMGLPRE 197 (753)
Q Consensus 120 ~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~-lv~Efs~~-~ss~~gl~~~ 197 (753)
+.-+..++..++-.|.|+.+|+. |++.++|+...+++ +--+...|+.-..+ +---|... ++.. =|.
T Consensus 101 ---~~~iQ~qlseal~~Ig~~DFP~k----WptLl~dL~~~ls~--~D~~~~~gVL~tahsiFkr~R~efrSda---L~~ 168 (960)
T KOG1992|consen 101 ---PFNIQKQLSEALSLIGKRDFPDK----WPTLLPDLVARLSS--GDFNVINGVLVTAHSIFKRYRPEFRSDA---LWL 168 (960)
T ss_pred ---cHHHHHHHHHHHHHHhccccchh----hHHHHHHHHhhccc--cchHHHHHHHHHHHHHHHhcCcccccHH---HHH
Confidence 46678888999999999999995 99999999999983 33344455544444 33333332 3311 244
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHH
Q 004445 198 FHEQCRISLELDYLKTFYCWARDAAL 223 (753)
Q Consensus 198 ~Hrk~k~sFe~~~L~~If~l~~~~L~ 223 (753)
.=.+|--.|.. -|.++|+-..+..+
T Consensus 169 EIK~vLd~f~~-Plt~Lf~~t~~l~~ 193 (960)
T KOG1992|consen 169 EIKLVLDRFAE-PLTDLFRKTMELIQ 193 (960)
T ss_pred HHHHHHHhhHh-HHHHHHHHHHHHHh
Confidence 44556666633 47777776666554
No 14
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0039 Score=70.94 Aligned_cols=123 Identities=11% Similarity=0.114 Sum_probs=86.2
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCChHHHHHHHhccCCc--hhHHHHHHHHHHHHHhhccccCCHHHHHHHH
Q 004445 33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQV--ANARFQAAAAIRDAAMREWSFLTADEKKSLI 108 (753)
Q Consensus 33 ~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~~--~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr 108 (753)
+|+-++.+.-.+|.. |+.+...+.+|+..|+--...-+||-+.++ .-++-.|--.|++-+.-.|+.++++...-+|
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiK 92 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIK 92 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHH
Confidence 555555555555532 789999999999999987777778865544 4566677778999999999999998887777
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcc
Q 004445 109 GFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLG 163 (753)
Q Consensus 109 ~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~ 163 (753)
.-+++-+. +..+.++.-.-.++-.|+-.|-.. +|+..++.+.+++.+
T Consensus 93 s~~l~~lg----d~~~lIr~tvGivITTI~s~~~~~----~wpelLp~L~~~L~s 139 (885)
T KOG2023|consen 93 SECLHGLG----DASPLIRATVGIVITTIASTGGLQ----HWPELLPQLCELLDS 139 (885)
T ss_pred HHHHhhcc----CchHHHHhhhhheeeeeecccccc----cchhHHHHHHHHhcC
Confidence 77776553 344555555444444444444333 477788888888873
No 15
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.003 Score=73.14 Aligned_cols=157 Identities=11% Similarity=0.063 Sum_probs=119.8
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHh-ccCCchhHHHHHHHHHHHHHhhcc-----ccCCHHHHHHHHHHHHHHHHhcCCC
Q 004445 48 PAAAEATILGLCQSPQPYKACQFIL-ENSQVANARFQAAAAIRDAAMREW-----SFLTADEKKSLIGFCLCFVMQHASS 121 (753)
Q Consensus 48 r~~Ae~~L~~f~~s~~~~~~c~~IL-e~S~~~y~~f~A~~~L~~~i~~~W-----~~l~~~~r~~lr~~ll~yl~~~~~~ 121 (753)
++-||+.|.+....|.-......|. ..+.+-.+++.|+--+++.|.|.| ..+|+++|..||.-++.... .
T Consensus 17 ~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~iR~~Ll~~~~----E 92 (978)
T KOG1993|consen 17 VKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDFIRCNLLLHSD----E 92 (978)
T ss_pred chhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHHHHHHHHHhcc----c
Confidence 7999999999999999988766655 445556899999999999999999 46999999999988776543 2
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHccc---CCchhHHHHHHHHHHHHhhhCCCCCCCCCCCHHH
Q 004445 122 PEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGI---HGVDTQFIGINFLESLVSEFSPSTSSAMGLPREF 198 (753)
Q Consensus 122 l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~---~s~~~~~~gl~iL~~lv~Efs~~~ss~~gl~~~~ 198 (753)
..+.+.-+...++++|.+..+|- +|++.++++.+.++++ |+...+.-.+-.|..++-++++.+=
T Consensus 93 ~~nQlaiQ~AvlisrIARlDyPr----eWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~RL--------- 159 (978)
T KOG1993|consen 93 ENNQLAIQNAVLISRIARLDYPR----EWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKRL--------- 159 (978)
T ss_pred chhHHHHHHHHHHHHHHhcCCCc----cchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHH---------
Confidence 44667777888888888877655 6999999999999865 2445556677788888888876431
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHH
Q 004445 199 HEQCRISLELDYLKTFYCWARDAAL 223 (753)
Q Consensus 199 Hrk~k~sFe~~~L~~If~l~~~~L~ 223 (753)
-++++.|.+. -+.||.+....+.
T Consensus 160 -~a~rk~F~el-~~~I~~~l~~~l~ 182 (978)
T KOG1993|consen 160 -LADRKAFYEL-APEILTILAPILW 182 (978)
T ss_pred -hhhhHHHHHH-hHHHHHHHHHHHh
Confidence 2667788664 6667774444443
No 16
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.021 Score=66.09 Aligned_cols=141 Identities=16% Similarity=0.197 Sum_probs=112.0
Q ss_pred HHHHHhhCCCC-HHHHHHHHHhhhcCCChHHHHHHHhccC-CchhHHHHHHHHHHHHHhhcccc-----CCHHHHHHHHH
Q 004445 37 IACSSIQMHVN-PAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWSF-----LTADEKKSLIG 109 (753)
Q Consensus 37 ~~~~~ly~~~~-r~~Ae~~L~~f~~s~~~~~~c~~ILe~S-~~~y~~f~A~~~L~~~i~~~W~~-----l~~~~r~~lr~ 109 (753)
.....+-..++ |..||+.|.++.+.|.-.-.|-+|+..- -.+.++.-|+--+++.|+|.|.+ .+++++.+.|.
T Consensus 8 cf~qTldada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~ 87 (970)
T COG5656 8 CFLQTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKK 87 (970)
T ss_pred HHHHHhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHH
Confidence 33334433333 9999999999999999999999999766 45699999999999999999987 55678889999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHHHHh
Q 004445 110 FCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVS 182 (753)
Q Consensus 110 ~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~ 182 (753)
|+.+-+......-+...|..+...+..|.--.|+.. -|+ +.+-...++++ +...+...||..+.++-.
T Consensus 88 ~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~---~wg-l~p~~~nll~s-~ea~~vy~gLlcl~elfk 155 (970)
T COG5656 88 YLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSD---LWG-LFPKAANLLRS-SEANHVYTGLLCLEELFK 155 (970)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchh---hcc-cchHHHHhhcc-cchhHHHHHHHHHHHHHH
Confidence 988888777644566667788888899998899853 476 88888999985 345666789988887764
No 17
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.018 Score=66.85 Aligned_cols=140 Identities=13% Similarity=0.078 Sum_probs=97.6
Q ss_pred HHHhhCCC-C-HHHHHHHHHhhhcCCCh--HHHHHHHh-ccCCchhHHHHHHHHHHHHHh-----------hccccCCHH
Q 004445 39 CSSIQMHV-N-PAAAEATILGLCQSPQP--YKACQFIL-ENSQVANARFQAAAAIRDAAM-----------REWSFLTAD 102 (753)
Q Consensus 39 ~~~ly~~~-~-r~~Ae~~L~~f~~s~~~--~~~c~~IL-e~S~~~y~~f~A~~~L~~~i~-----------~~W~~l~~~ 102 (753)
|....+|. | |+.||+.|.++++..-+ +...-.+| ..-+++++++.|.-.|++.++ .+|-.++.+
T Consensus 7 le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e 86 (859)
T KOG1241|consen 7 LEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAE 86 (859)
T ss_pred HHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHH
Confidence 33344552 3 99999999999975433 33334445 445667999999999998776 479999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHHHHh
Q 004445 103 EKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVS 182 (753)
Q Consensus 103 ~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~ 182 (753)
-|.++|++++.-+. +..+.+.+...+++|.|..-+-|.+ .|+.++..+..-+....+..+..-.|.-+.=+.+
T Consensus 87 ~reqVK~~il~tL~----~~ep~~~s~Aaq~va~IA~~ElP~n---~wp~li~~lv~nv~~~~~~~~k~~slealGyice 159 (859)
T KOG1241|consen 87 IREQVKNNILRTLG----SPEPRRPSSAAQCVAAIACIELPQN---QWPELIVTLVSNVGEEQASMVKESSLEALGYICE 159 (859)
T ss_pred HHHHHHHHHHHHcC----CCCCCccchHHHHHHHHHHhhCchh---hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHc
Confidence 99999999998764 3556677888899999988888874 6998988888777542222222333333333444
Q ss_pred hhC
Q 004445 183 EFS 185 (753)
Q Consensus 183 Efs 185 (753)
+..
T Consensus 160 ~i~ 162 (859)
T KOG1241|consen 160 DID 162 (859)
T ss_pred cCC
Confidence 443
No 18
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=96.54 E-value=0.16 Score=60.44 Aligned_cols=130 Identities=9% Similarity=0.106 Sum_probs=100.3
Q ss_pred CHHHHHHHHHhhhcCCChHHHHHHHhccC-CchhHHHHHHHHHHHHHhhcccc-----CCHHHHHHHHHHHHHHHHhcCC
Q 004445 47 NPAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWSF-----LTADEKKSLIGFCLCFVMQHAS 120 (753)
Q Consensus 47 ~r~~Ae~~L~~f~~s~~~~~~c~~ILe~S-~~~y~~f~A~~~L~~~i~~~W~~-----l~~~~r~~lr~~ll~yl~~~~~ 120 (753)
.++.||+-|+++...++-..+...|--.. .+--.+.-|+--+++.|.++|.. +.++++.-||.-+++.+.+..
T Consensus 20 s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR~~l~~lii~s~- 98 (947)
T COG5657 20 SVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIRDELFSLIISSS- 98 (947)
T ss_pred hHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHHHHHHHHHHccc-
Confidence 48999999999999999777766666555 55578888888999999999954 777778899999999998654
Q ss_pred CCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHHHHhhhC
Q 004445 121 SPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS 185 (753)
Q Consensus 121 ~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~Efs 185 (753)
.+..-+...++.+|....+|| +|++.++|+...+++ ++-....-.+..+.+++.++.
T Consensus 99 ---n~l~iq~a~avs~IA~~DfPd----eWpTL~~DL~~~Ls~-~D~~tn~~~L~~~h~Ifk~~r 155 (947)
T COG5657 99 ---NQLQIQNALAVSRIARLDFPD----EWPTLVPDLLSLLSE-KDMVTNENSLRVLHHIFKRLR 155 (947)
T ss_pred ---chHHHHHHHHHHHHHhccCcc----cchhHHHHHHhhhcc-cchHHHHHHHHHHHHHHHHHh
Confidence 333338889999999999888 599999999999984 333333444555555555554
No 19
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.65 E-value=0.61 Score=55.63 Aligned_cols=136 Identities=12% Similarity=0.099 Sum_probs=98.3
Q ss_pred HHhhCC-CC-HHHHHHHHHhhhcCCChHHH-HHHHhccCCchhHHHHHHHHHHHHHhhcccc----------CCHHHHHH
Q 004445 40 SSIQMH-VN-PAAAEATILGLCQSPQPYKA-CQFILENSQVANARFQAAAAIRDAAMREWSF----------LTADEKKS 106 (753)
Q Consensus 40 ~~ly~~-~~-r~~Ae~~L~~f~~s~~~~~~-c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~----------l~~~~r~~ 106 (753)
....++ ++ |.+||..|.++...++.-.+ |.-....-.+---+=+|+-.|+++|..+|.. .+.+.|.-
T Consensus 11 ~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~e~~K~~ 90 (1005)
T KOG2274|consen 11 SGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVSEEVKAL 90 (1005)
T ss_pred HhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcccHHHHHH
Confidence 334444 33 99999999999987775443 5555655344445556678999999999965 34556777
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHHHHhhh
Q 004445 107 LIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEF 184 (753)
Q Consensus 107 lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~Ef 184 (753)
||+-+++-+. +-.+.+++...-.+..|..-.||| +|+..++-+.+++.+ ++..+.-=+++.|.++..|-
T Consensus 91 IRe~Ll~~l~----~sn~ki~~~vay~is~Ia~~D~Pd----~WpElv~~i~~~l~~-~n~n~i~~am~vL~el~~ev 159 (1005)
T KOG2274|consen 91 IREQLLNLLD----DSNSKIRSAVAYAISSIAAVDYPD----EWPELVPFILKLLSS-GNENSIHGAMRVLAELSDEV 159 (1005)
T ss_pred HHHHHHhhhh----ccccccchHHHHHHHHHHhccCch----hhHHHHHHHHHHHhc-cchhhhhhHHHHHHHHHHHH
Confidence 7888887766 356778888888888999999999 599999999999985 56655555566666555443
No 20
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=90.13 E-value=7.9 Score=44.41 Aligned_cols=107 Identities=16% Similarity=0.172 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhhcCCChHHH----HHHHhccCCchhHHHHHHHHHHHHHh-----------hccccCCHHHHHHHHHHHH
Q 004445 48 PAAAEATILGLCQSPQPYKA----CQFILENSQVANARFQAAAAIRDAAM-----------REWSFLTADEKKSLIGFCL 112 (753)
Q Consensus 48 r~~Ae~~L~~f~~s~~~~~~----c~~ILe~S~~~y~~f~A~~~L~~~i~-----------~~W~~l~~~~r~~lr~~ll 112 (753)
|..||+.|++++.. |..+. .+-+-+.-+++|.++.|.-+|++.+. .+|-.++.+-|.++|.-.+
T Consensus 22 rl~aE~ql~~l~~~-dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al 100 (858)
T COG5215 22 RLRAEAQLLELQSG-DFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMAL 100 (858)
T ss_pred cccHHHHHHHhccc-cHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 89999999999863 33332 45555777899999999999998776 4799999998888888877
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHc
Q 004445 113 CFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVL 162 (753)
Q Consensus 113 ~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~ 162 (753)
.-+. +..+-.-+...+++|.|.+-+-+.. .|+.+..++...+-
T Consensus 101 ~aL~----s~epr~~~~Aaql~aaIA~~Elp~~---~wp~lm~~mv~nvg 143 (858)
T COG5215 101 RALK----SPEPRFCTMAAQLLAAIARMELPNS---LWPGLMEEMVRNVG 143 (858)
T ss_pred HHhc----CCccHHHHHHHHHHHHHHHhhCccc---cchHHHHHHHHhcc
Confidence 7664 3445556677899999998888873 68888887776653
No 21
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=74.50 E-value=32 Score=36.67 Aligned_cols=173 Identities=10% Similarity=0.069 Sum_probs=105.1
Q ss_pred HHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHH
Q 004445 136 QLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFY 215 (753)
Q Consensus 136 ~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~Efs~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If 215 (753)
.-+++.|.+ .+|.-+++=+..++-. .++.....||.+|..++....... -..|++.+|.++|
T Consensus 106 ~~~~~~~i~---~~~~liiP~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~~--------------~~~L~~tGl~~v~ 167 (282)
T PF10521_consen 106 SQLDRPWIS---QHWPLIIPPILNLLDD-YSPEIKIQGCQLLHHLLEKVPAAE--------------WDILRRTGLFSVF 167 (282)
T ss_pred hcCCcchHH---HhhhHHHhhHHHHhcC-CCHHHHHHHHHHHHHHHHhCChhh--------------hHHHHHcChHHHH
Confidence 356666666 3577778888888864 467888999999999998775422 2367788888877
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHhcccccccCCCCccchhhhcccccccccCCCCCCccccccCCcc
Q 004445 216 CWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPA 295 (753)
Q Consensus 216 ~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~ 295 (753)
.- +|.......|+.+...+...++..+..++..++.=.|.....
T Consensus 168 ~~---al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~--------------------------------- 211 (282)
T PF10521_consen 168 ED---ALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSN--------------------------------- 211 (282)
T ss_pred HH---HHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcc---------------------------------
Confidence 74 444444444555554556778888888887775544422211
Q ss_pred hhHhhcccchHHHHHHHHHHHHhhcccCCCCCCcccHHHHHHHHHHHhcccCccccCCChhhHHHHHHHHHHHHHHhcCC
Q 004445 296 WCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDP 375 (753)
Q Consensus 296 Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~cL~qLaSl~~~~f~~~~~~~r~~~l~~~l~~~~~il~~ 375 (753)
.|...++.-+-+.++.-+..... ...+.+....++-|..+...-|- .-++|+.+++.-+.++|.+
T Consensus 212 ~r~~~l~~~l~e~IL~~~~~~~~-------~~~~~l~~~ll~~l~~~i~~lGi--------~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 212 PRSTWLDKILREGILSSMEHESS-------FSYPRLRTVLLQQLPPIIDELGI--------SSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred cchHHHHHHHHHHHhhhceeccc-------cCchhHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHhcC
Confidence 01112222222323322222110 01256777777777766554331 3477999999999999887
Q ss_pred ch
Q 004445 376 PD 377 (753)
Q Consensus 376 ~~ 377 (753)
|.
T Consensus 277 pf 278 (282)
T PF10521_consen 277 PF 278 (282)
T ss_pred CC
Confidence 65
No 22
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=71.06 E-value=2.1 Score=20.15 Aligned_cols=7 Identities=43% Similarity=0.587 Sum_probs=5.1
Q ss_pred CCCCCCC
Q 004445 10 GGGGDDG 16 (753)
Q Consensus 10 ~~~~~~~ 16 (753)
-||||+|
T Consensus 2 hgG~Wgq 8 (8)
T PF03991_consen 2 HGGGWGQ 8 (8)
T ss_pred CCCcCCC
Confidence 3788876
No 23
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=64.32 E-value=1e+02 Score=33.24 Aligned_cols=169 Identities=16% Similarity=0.132 Sum_probs=84.4
Q ss_pred HHHHHhhhcCCC--hHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 004445 52 EATILGLCQSPQ--PYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAK 129 (753)
Q Consensus 52 e~~L~~f~~s~~--~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~ 129 (753)
.+.+..+...++ +|.....+|+++ ..|++..|+..|...+...=..-.. ...++-.++++++.+...+-..-+..-
T Consensus 92 ~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~~-~~~~~l~~ll~~L~~~l~~~~~~~~~~ 169 (312)
T PF03224_consen 92 VELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRSEK-LVKEALPKLLQWLSSQLSSSDSELQYI 169 (312)
T ss_dssp HHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT--HH-HHHHHHHHHHHHHH-TT-HHHH---HH
T ss_pred HHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHHHHHHhhcCCCcchHHH
Confidence 344555554333 788777777655 9999999999999998875222111 113666888898887543222333344
Q ss_pred HHHHHHHHHHhcccCCCCCc-hhHHHHHHHHHH------cccCCchhHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHH
Q 004445 130 ISSVAAQLMKRGWLDFTSSD-KEAFFSQVHQAV------LGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQC 202 (753)
Q Consensus 130 l~~~la~I~K~gW~d~~~~~-~~~~i~ei~~~l------~~~~s~~~~~~gl~iL~~lv~Efs~~~ss~~gl~~~~Hrk~ 202 (753)
.+++++.++|..=.-. .. ..+.++.+...+ .+..+.+.+--.+-.+-.+. |+..+
T Consensus 170 av~~L~~LL~~~~~R~--~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS----------------F~~~~ 231 (312)
T PF03224_consen 170 AVQCLQNLLRSKEYRQ--VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS----------------FEPEI 231 (312)
T ss_dssp HHHHHHHHHTSHHHHH--HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHT----------------TSHHH
T ss_pred HHHHHHHHhCcchhHH--HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh----------------cCHHH
Confidence 5566666654321100 00 123445555555 11111222222222222222 23345
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHhcc
Q 004445 203 RISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILN 254 (753)
Q Consensus 203 k~sFe~~~L~~If~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Ls 254 (753)
...|.+.. ++....++++.+. ..+++.-++.++.++++
T Consensus 232 ~~~~~~~~---~i~~L~~i~~~~~-----------KEKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 232 AEELNKKY---LIPLLADILKDSI-----------KEKVVRVSLAILRNLLS 269 (312)
T ss_dssp HHHHHTTS---HHHHHHHHHHH-------------SHHHHHHHHHHHHHTTS
T ss_pred HHHHhccc---hHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHh
Confidence 55565554 5555566666543 44677777888888764
No 24
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=56.62 E-value=1.4e+02 Score=29.57 Aligned_cols=103 Identities=17% Similarity=0.097 Sum_probs=66.2
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHhhhcCCChHHHHHHHhccCCchhHHHHHHHHHHHHHhhcccc
Q 004445 20 GGPADLAKLQSIMHSIEIACSSIQMHV-NPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSF 98 (753)
Q Consensus 20 ~~~md~~~l~~~~~~lE~~~~~ly~~~-~r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~ 98 (753)
.+..|++.+ .+++++.+++..++ +..+|++.|.+..+.|.+|+.-..++- .-.++..+--...-.|..
T Consensus 59 ~~~~nl~~l----~~v~~l~~~~~~~~~~~~ea~~~L~~I~~~~~~y~~~~~~l~-------~~l~~~~fa~lfgg~~~~ 127 (193)
T PF06738_consen 59 PRGVNLDKL----AAVNRLSRRIVAGQLSLEEAIERLDEIDREPPRYPPWLVILA-------AGLASAAFALLFGGSWID 127 (193)
T ss_pred CCCcCHHHH----HHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCCHHHHHHH-------HHHHHHHHHHHHCCCHHH
Confidence 367888899 99999999998764 589999999999999977665444442 122222233334445554
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 004445 99 LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVA 134 (753)
Q Consensus 99 l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~l 134 (753)
+-..--.++--+++.+..++- ...+|+.+-+.-.+
T Consensus 128 ~~~a~i~g~~~~~~~~~~~r~-~~~~~~~~~~aa~~ 162 (193)
T PF06738_consen 128 MIVAFILGLLVGLLRQLLSRR-RLNSFIQEFIAAFL 162 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHH
Confidence 445555566666666666665 46666655543333
No 25
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.75 E-value=71 Score=27.81 Aligned_cols=40 Identities=18% Similarity=0.133 Sum_probs=26.4
Q ss_pred CCCChhhHHHHHHHHHHHHHHhhCCCC-HHHHHHHHHhhhc
Q 004445 21 GPADLAKLQSIMHSIEIACSSIQMHVN-PAAAEATILGLCQ 60 (753)
Q Consensus 21 ~~md~~~l~~~~~~lE~~~~~ly~~~~-r~~Ae~~L~~f~~ 60 (753)
.+|+.+.+...++-|+.+.+.--.|.| |+.|++....+++
T Consensus 8 ~~d~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~ 48 (93)
T COG1698 8 MNDSEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNN 48 (93)
T ss_pred hhhhHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhC
Confidence 567777775555555554444444556 8899999888875
No 26
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=40.33 E-value=1.4e+02 Score=34.39 Aligned_cols=90 Identities=16% Similarity=0.221 Sum_probs=62.8
Q ss_pred CCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHH
Q 004445 75 SQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFF 154 (753)
Q Consensus 75 S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i 154 (753)
++|+|++-.|+++|-... +++-...+-..+.+.+. +..+|||.+.+.++++|.|. .++.. +.. ++
T Consensus 90 ~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~ll~----~~~~~VRk~A~~~l~~i~~~-~p~~~--~~~-~~ 154 (526)
T PF01602_consen 90 SPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKLLS----DPSPYVRKKAALALLKIYRK-DPDLV--EDE-LI 154 (526)
T ss_dssp SSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHH----SSSHHHHHHHHHHHHHHHHH-CHCCH--HGG-HH
T ss_pred CCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHHhc----CCchHHHHHHHHHHHHHhcc-CHHHH--HHH-HH
Confidence 678999999999988865 34445555555555554 34569999999999999998 33321 122 78
Q ss_pred HHHHHHHcccCCchhHHHHHHHHHHH
Q 004445 155 SQVHQAVLGIHGVDTQFIGINFLESL 180 (753)
Q Consensus 155 ~ei~~~l~~~~s~~~~~~gl~iL~~l 180 (753)
+.+.+++.. .++....-++.++.++
T Consensus 155 ~~l~~lL~d-~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 155 PKLKQLLSD-KDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHTTH-SSHHHHHHHHHHHHHH
T ss_pred HHHhhhccC-CcchhHHHHHHHHHHH
Confidence 889999864 4556666777777776
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=39.68 E-value=1.4e+02 Score=26.02 Aligned_cols=107 Identities=13% Similarity=-0.026 Sum_probs=59.2
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHH-----HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 004445 64 PYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKK-----SLIGFCLCFVMQHASSPEGYVQAKISSVAAQLM 138 (753)
Q Consensus 64 ~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~-----~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~ 138 (753)
.++....+|.+. +++++..|+.+|....... ++.+. ++-..+++++.. -.+-|+...+.++..|.
T Consensus 8 ~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~-----~~~~~~~~~~~~i~~l~~~l~~----~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 8 GLPALVSLLSSS-DENVQREAAWALSNLSAGN-----NDNIQAVVEAGGLPALVQLLKS----EDEEVVKAALWALRNLA 77 (120)
T ss_pred ChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCC-----HHHHHHHHHCCChHHHHHHHhC----CCHHHHHHHHHHHHHHc
Confidence 444555566544 4788888988888876651 22222 333455555432 34677788888888887
Q ss_pred HhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHHHH
Q 004445 139 KRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLV 181 (753)
Q Consensus 139 K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv 181 (753)
..+......-....+++.+.+.+.. .+......++.+|..+.
T Consensus 78 ~~~~~~~~~~~~~g~l~~l~~~l~~-~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 78 AGPEDNKLIVLEAGGVPKLVNLLDS-SNEDIQKNATGALSNLA 119 (120)
T ss_pred cCcHHHHHHHHHCCChHHHHHHHhc-CCHHHHHHHHHHHHHhh
Confidence 5443110000112245566666653 34455556666666553
No 28
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=37.94 E-value=1.8e+02 Score=27.44 Aligned_cols=97 Identities=15% Similarity=0.068 Sum_probs=52.1
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHHhc---cCCchhHHHHHHHHHHHHHhhccccCCHHHHHHH----
Q 004445 35 IEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILE---NSQVANARFQAAAAIRDAAMREWSFLTADEKKSL---- 107 (753)
Q Consensus 35 lE~~~~~ly~~~~r~~Ae~~L~~f~~s~~~~~~c~~ILe---~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~l---- 107 (753)
+|+|+......+|-...-++....+..++.-..+-..|. .+.+|.++++|+.+|...+.+. +..-+.++
T Consensus 10 i~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNc----g~~f~~ev~~~~ 85 (140)
T PF00790_consen 10 IEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNC----GPRFHREVASKE 85 (140)
T ss_dssp HHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHS----HHHHHHHHTSHH
T ss_pred HHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC----CHHHHHHHhHHH
Confidence 666666554444444444444445555554444333331 2389999999999999999884 33333333
Q ss_pred -HHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 004445 108 -IGFCLCFVMQHASSPEGYVQAKISSVAA 135 (753)
Q Consensus 108 -r~~ll~yl~~~~~~l~~~V~~~l~~~la 135 (753)
-+.+...+..+.....+.|++++..++.
T Consensus 86 fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~ 114 (140)
T PF00790_consen 86 FLDELVKLIKSKKTDPETPVKEKILELLQ 114 (140)
T ss_dssp HHHHHHHHHHHTTTHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHHH
Confidence 3334444444432111238888776553
No 29
>PTZ00429 beta-adaptin; Provisional
Probab=36.88 E-value=6.9e+02 Score=30.72 Aligned_cols=93 Identities=10% Similarity=0.099 Sum_probs=62.9
Q ss_pred CCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHH
Q 004445 75 SQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFF 154 (753)
Q Consensus 75 S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i 154 (753)
+.||+++=.|+.+|-..-. .++-.|+...+.+.-.+..+|||.+.+.++++|.+..= +. -+...++
T Consensus 116 d~Np~IRaLALRtLs~Ir~-----------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-el--v~~~~~~ 181 (746)
T PTZ00429 116 NSSPVVRALAVRTMMCIRV-----------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-QL--FYQQDFK 181 (746)
T ss_pred CCCHHHHHHHHHHHHcCCc-----------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-cc--ccccchH
Confidence 3567777777776655222 24667888887777667889999999999999976421 11 0122477
Q ss_pred HHHHHHHcccCCchhHHHHHHHHHHHHh
Q 004445 155 SQVHQAVLGIHGVDTQFIGINFLESLVS 182 (753)
Q Consensus 155 ~ei~~~l~~~~s~~~~~~gl~iL~~lv~ 182 (753)
+++..++.. .++....-++..|.++..
T Consensus 182 ~~L~~LL~D-~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 182 KDLVELLND-NNPVVASNAAAIVCEVND 208 (746)
T ss_pred HHHHHHhcC-CCccHHHHHHHHHHHHHH
Confidence 888888763 456666677777777653
No 30
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=32.97 E-value=1.9e+02 Score=23.96 Aligned_cols=84 Identities=17% Similarity=0.113 Sum_probs=49.7
Q ss_pred HHHHHHHhhCCCC---HHHHHHHHHhhhcCCChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHHH
Q 004445 35 IEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFC 111 (753)
Q Consensus 35 lE~~~~~ly~~~~---r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~l 111 (753)
++.+.+.+...++ |..|=+.|.+++ ++...+....+| ++.++.++..|+.+|... + ..+....|
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i--------~---~~~~~~~L 67 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELL-KDEDPMVRRAAARALGRI--------G---DPEAIPAL 67 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC--------H---HHHTHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh--------C---CHHHHHHH
Confidence 3556666644444 666666666554 456666666667 578889999998888753 1 12234444
Q ss_pred HHHHHhcCCCCchHHHHHHHHHH
Q 004445 112 LCFVMQHASSPEGYVQAKISSVA 134 (753)
Q Consensus 112 l~yl~~~~~~l~~~V~~~l~~~l 134 (753)
...+.+ +-...|+......+
T Consensus 68 ~~~l~~---~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 68 IKLLQD---DDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHTC----SSHHHHHHHHHHH
T ss_pred HHHHcC---CCcHHHHHHHHhhc
Confidence 443332 23456666666554
No 31
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=32.18 E-value=1.5e+03 Score=30.98 Aligned_cols=101 Identities=17% Similarity=0.297 Sum_probs=58.4
Q ss_pred chhHHHHHHHHHHHHHhhccccCCHHH-------HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCc
Q 004445 77 VANARFQAAAAIRDAAMREWSFLTADE-------KKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSD 149 (753)
Q Consensus 77 ~~y~~f~A~~~L~~~i~~~W~~l~~~~-------r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~ 149 (753)
+..+-+||.-.|+.+..+ .++.++ +.-||-|. +++.+. ...-|+..+++++..|++- ..+.-+..
T Consensus 1150 n~~va~fAidsLrQLs~k---fle~eEL~~f~FQkefLkPfe--~im~~s--~~~eVrE~ILeCv~qmI~s-~~~nIkSG 1221 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMK---FLEREELANYNFQNEFMKPFV--IVMRKS--NAVEIRELIIRCVSQMVLS-RVNNVKSG 1221 (1780)
T ss_pred chhHHHHHHHHHHHHHHH---hcchhhhhchhHHHHHHHHHH--HHHHhc--CchHHHHHHHHHHHHHHHH-HHhhhhcC
Confidence 566789999999998887 344433 33444433 445543 3335666666666555432 11222223
Q ss_pred hhHHHHHHHHHHcccCCchhHHHHHHHHHHHHhhhCC
Q 004445 150 KEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSP 186 (753)
Q Consensus 150 ~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~Efs~ 186 (753)
|.+++.=+...... ..+.....|-..+..++.||-.
T Consensus 1222 WktIF~VLs~aa~d-~~e~iV~lAFetl~~I~~d~f~ 1257 (1780)
T PLN03076 1222 WKSMFMVFTTAAYD-DHKNIVLLAFEIIEKIIREYFP 1257 (1780)
T ss_pred cHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHhhhh
Confidence 55565555544442 3456667888888888887754
No 32
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=30.37 E-value=5.4e+02 Score=27.02 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=65.3
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHhhhcCCChHHHHHHHhccCCchhHHHHHHHHHHHHHhhcccc
Q 004445 20 GGPADLAKLQSIMHSIEIACSSIQMHV-NPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSF 98 (753)
Q Consensus 20 ~~~md~~~l~~~~~~lE~~~~~ly~~~-~r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~ 98 (753)
+..+|++.+ .++.+++.++..+. +-++|++.|.+..+.|..|..-..++ .-.+++..+..+..-.|..
T Consensus 81 ~~~~nl~kv----s~v~~i~~~v~~~~~~~e~a~~~l~~i~~~~~~y~~~l~~~-------~~g~~~~~f~~l~gG~w~d 149 (250)
T COG2966 81 DRGINLEKV----SEVNRISRAVEHGRLDLEEAHKKLDEIQKQPLRYSRWLVLL-------MAGLAAAAFALLFGGGWLD 149 (250)
T ss_pred CCCccHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHHhhhCccccccHHHHH-------HHHHHHHHHHHHcCCchHH
Confidence 366788899 99999999998874 47999999999988888765433322 1223344555555557776
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 004445 99 LTADEKKSLIGFCLCFVMQHASSPEGYVQAK 129 (753)
Q Consensus 99 l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~ 129 (753)
....--..+--+++.+..+|. ..+.+..+.
T Consensus 150 ~~iaf~~~~~~~~~~~~l~r~-~~~~~~~~~ 179 (250)
T COG2966 150 FLIAFFAGLLGFLLRQYLSRK-GNPDFFFEV 179 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hchhhHHHH
Confidence 666666666666666655543 345444444
No 33
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=29.13 E-value=4.9e+02 Score=24.64 Aligned_cols=60 Identities=8% Similarity=0.045 Sum_probs=35.3
Q ss_pred ccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHhc---CCCCchHHHHHHHHHH
Q 004445 73 ENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQH---ASSPEGYVQAKISSVA 134 (753)
Q Consensus 73 e~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ll~yl~~~---~~~l~~~V~~~l~~~l 134 (753)
.++.++.++.+|+++|+..+.+.-..+= +-..=|.|+-+.+... ..+.+.-|.+++..++
T Consensus 48 ~~~~n~~v~l~aL~LLe~~vkNCG~~fh--~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li 110 (141)
T cd03565 48 NGNKNHKEVMLTLTVLETCVKNCGHRFH--VLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALI 110 (141)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHccHHHH--HHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHH
Confidence 4467899999999999999988543221 1122245554422222 1134556777765544
No 34
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=28.30 E-value=8.9e+02 Score=27.20 Aligned_cols=135 Identities=11% Similarity=0.082 Sum_probs=68.2
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCC
Q 004445 68 CQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTS 147 (753)
Q Consensus 68 c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~ 147 (753)
+-.+.-++.+++.+..+++.+--.+++ |.. .+ .+..++-....+.....+.-.+.+.+.+++-|+|-=-.-.++
T Consensus 194 l~~~~~~~~~~~~~~~~~~~la~LvNK-~~~--~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~ 267 (415)
T PF12460_consen 194 LLNLALSSEDEFSRLAALQLLASLVNK-WPD--DD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP 267 (415)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHcC-CCC--hh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence 444445566688888888888877777 532 22 333333333322211233333444445555444422211111
Q ss_pred CchhHHHHHHHHHHcccCCchhHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHH
Q 004445 148 SDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWA 218 (753)
Q Consensus 148 ~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~Efs~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If~l~ 218 (753)
.-..++..+.+++. +++....+-+-+.-++.+... -++.+.|-.+|-.++.-.+..++...
T Consensus 268 -~~~~~~~~L~~lL~---~~~~g~~aA~~f~il~~d~~~------~l~~~~~a~vklLykQR~F~~~~p~L 328 (415)
T PF12460_consen 268 -LATELLDKLLELLS---SPELGQQAAKAFGILLSDSDD------VLNKENHANVKLLYKQRFFTQVLPKL 328 (415)
T ss_pred -hHHHHHHHHHHHhC---ChhhHHHHHHHHhhHhcCcHH------hcCccccchhhhHHhHHHHHHHHHHH
Confidence 22247778888776 344444444555555555322 22334566777777655444444433
No 35
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=27.97 E-value=5e+02 Score=24.15 Aligned_cols=59 Identities=10% Similarity=-0.067 Sum_probs=36.2
Q ss_pred CCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHhcCC--CCchHHHHHHHHHHH
Q 004445 75 SQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHAS--SPEGYVQAKISSVAA 135 (753)
Q Consensus 75 S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ll~yl~~~~~--~l~~~V~~~l~~~la 135 (753)
+.+|.++..|+.+|+..+.+.-..+- ....=+.|+...+.-..+ ..+.-|+.++..++.
T Consensus 48 ~~n~~vql~AL~lLd~~vkNcg~~f~--~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~ 108 (133)
T cd03561 48 YGNPHVQLLALTLLELLVKNCGKPFH--LQVADKEFLLELVKIAKNSPKYDPKVREKALELIL 108 (133)
T ss_pred CCCHHHHHHHHHHHHHHHHhCChHHH--HHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 36899999999999999988533221 222225566663222221 456778888776554
No 36
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.57 E-value=1.4e+03 Score=29.21 Aligned_cols=118 Identities=19% Similarity=0.136 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhhcCCCh--HH--------HHHHHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHH-
Q 004445 48 PAAAEATILGLCQSPQP--YK--------ACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVM- 116 (753)
Q Consensus 48 r~~Ae~~L~~f~~s~~~--~~--------~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ll~yl~- 116 (753)
|..|-+.+-++...=.+ -. ..-.+|+...++-++-+|++.|.+..-.. + +..|--||=+.+.
T Consensus 406 r~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~----~---~~~l~pYLd~lm~~ 478 (1075)
T KOG2171|consen 406 RYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC----D---KSILEPYLDGLMEK 478 (1075)
T ss_pred HHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC----c---HHHHHHHHHHHHHH
Confidence 67788877777653222 11 23456788999999999999998866552 2 3334444333222
Q ss_pred ---hcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHH
Q 004445 117 ---QHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIG 173 (753)
Q Consensus 117 ---~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~g 173 (753)
....+-.++|+...+..+|.+.--.=-.+.+- -+.+.+-+.+++++..+.+.+.+-
T Consensus 479 ~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY-~d~~Mp~L~~~L~n~~~~d~r~Lr 537 (1075)
T KOG2171|consen 479 KLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPY-FDRLMPLLKNFLQNADDKDLRELR 537 (1075)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhH-HHHHHHHHHHHHhCCCchhhHHHH
Confidence 11224579999999888887753221111111 223666778888764445555433
No 37
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=26.00 E-value=4.8e+02 Score=23.33 Aligned_cols=57 Identities=7% Similarity=0.043 Sum_probs=36.6
Q ss_pred CCchhHHHHHHHHHHHHHhhccccCCHHHHHHH--HHHHHHHHH-----hcCCCCchHHHHHHHHHHH
Q 004445 75 SQVANARFQAAAAIRDAAMREWSFLTADEKKSL--IGFCLCFVM-----QHASSPEGYVQAKISSVAA 135 (753)
Q Consensus 75 S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~l--r~~ll~yl~-----~~~~~l~~~V~~~l~~~la 135 (753)
++++-+++.|+.+|+..+.+- +..-..++ +.|+.+++. ..+.+....|+.++..++.
T Consensus 48 ~~~~~~~lkaL~lLe~lvkN~----g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 48 NKNPHVVLKALTLLEYCVKNC----GERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred CCcHHHHHHHHHHHHHHHHHc----cHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 358999999999999998884 33334444 235544432 1233457888888777654
No 38
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=24.79 E-value=2.9e+02 Score=25.56 Aligned_cols=30 Identities=13% Similarity=0.408 Sum_probs=22.8
Q ss_pred HHHHHhccCCchhHHHHHHHHHHHHHhhccc
Q 004445 67 ACQFILENSQVANARFQAAAAIRDAAMREWS 97 (753)
Q Consensus 67 ~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~ 97 (753)
....++.+ .++.+++.|+.++.+.+...|.
T Consensus 90 ~vM~Lm~h-~d~eVr~eAL~avQklm~~~w~ 119 (119)
T PF11698_consen 90 RVMELMNH-EDPEVRYEALLAVQKLMVNNWE 119 (119)
T ss_dssp HHHHHTS--SSHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHHhcCC
Confidence 34555554 7999999999999999999984
No 39
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=22.79 E-value=9.1e+02 Score=25.43 Aligned_cols=105 Identities=10% Similarity=0.080 Sum_probs=65.1
Q ss_pred CchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHH
Q 004445 76 QVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFS 155 (753)
Q Consensus 76 ~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ 155 (753)
....+.-.|+..|..++.. +.++.+.-..+-+.+.+.+- .+..+.-+|-+..+++-.++..-...- ...-..|+.
T Consensus 52 ~D~~~~~~~l~gl~~L~~~--~~~~~~~~~~i~~~l~~~~~--~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~ 126 (262)
T PF14500_consen 52 DDHACVQPALKGLLALVKM--KNFSPESAVKILRSLFQNVD--VQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVY 126 (262)
T ss_pred ccHhhHHHHHHHHHHHHhC--cCCChhhHHHHHHHHHHhCC--hhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHH
Confidence 4444444556666666633 45666665555555544221 123455566666666655554321110 111235999
Q ss_pred HHHHHHcccCCchhHHHHHHHHHHHHhhhC
Q 004445 156 QVHQAVLGIHGVDTQFIGINFLESLVSEFS 185 (753)
Q Consensus 156 ei~~~l~~~~s~~~~~~gl~iL~~lv~Efs 185 (753)
.+.+.+.++.+|..-++..+++..++.+|.
T Consensus 127 ~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 127 GFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 999999988889999999999999999997
No 40
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=22.71 E-value=1.9e+03 Score=29.26 Aligned_cols=93 Identities=19% Similarity=0.332 Sum_probs=61.2
Q ss_pred CHHHHHHHHHhhhcCCCh---------HHHHHHHhccC-C-chhHHHHHHHHHHHHHhhccccCCHHHHH----------
Q 004445 47 NPAAAEATILGLCQSPQP---------YKACQFILENS-Q-VANARFQAAAAIRDAAMREWSFLTADEKK---------- 105 (753)
Q Consensus 47 ~r~~Ae~~L~~f~~s~~~---------~~~c~~ILe~S-~-~~y~~f~A~~~L~~~i~~~W~~l~~~~r~---------- 105 (753)
++.+--+.|++...+|+. ++..-.||--- . ...++..|.+.|.+.|..+ +++|.
T Consensus 210 D~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSq-----PD~kr~RRE~kvL~l 284 (2195)
T KOG2122|consen 210 DEEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQ-----PDEKRGRREKKVLHL 284 (2195)
T ss_pred CHHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-----cchhhhHHHHHHHHH
Confidence 455555556666666553 33333333211 2 4689999999999999874 23322
Q ss_pred --HHHHHH---HHHHHhcCCC-CchHHHHHHHHHHHHHHHhcccC
Q 004445 106 --SLIGFC---LCFVMQHASS-PEGYVQAKISSVAAQLMKRGWLD 144 (753)
Q Consensus 106 --~lr~~l---l~yl~~~~~~-l~~~V~~~l~~~la~I~K~gW~d 144 (753)
+||.|+ ..|+..+++. .+.-+..+||..++.|+|.++=+
T Consensus 285 LeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDE 329 (2195)
T KOG2122|consen 285 LEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDE 329 (2195)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccH
Confidence 566654 4577777654 35778999999999999999844
No 41
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=21.26 E-value=2.7e+02 Score=29.30 Aligned_cols=79 Identities=9% Similarity=0.118 Sum_probs=57.4
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCC
Q 004445 68 CQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTS 147 (753)
Q Consensus 68 c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~ 147 (753)
++.|.+...+.|++.-|..+|...+... +..|..+-+|+-.++...-.+-+.|+-..++..++.+ .
T Consensus 117 ~~li~~~~~~~yvR~aa~~aL~~l~~~~-----~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL--------~- 182 (249)
T PF06685_consen 117 KELIEDPDADEYVRMAAISALAFLVHEG-----PISREEVIQYFRELLNYFLERNPSFLWGSLVADICDL--------Y- 182 (249)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhc--------C-
Confidence 3445555667899999999999987773 5567788888888777665556788888888777776 1
Q ss_pred CchhHHHHHHHHHHc
Q 004445 148 SDKEAFFSQVHQAVL 162 (753)
Q Consensus 148 ~~~~~~i~ei~~~l~ 162 (753)
.. ..+++|.++..
T Consensus 183 -~~-EL~~~I~~~f~ 195 (249)
T PF06685_consen 183 -PE-ELLPEIRKAFE 195 (249)
T ss_pred -HH-HhHHHHHHHHH
Confidence 12 37778877776
No 42
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.97 E-value=9e+02 Score=28.40 Aligned_cols=71 Identities=23% Similarity=0.215 Sum_probs=46.8
Q ss_pred HHHHHHHHHh----------hhcCCChHHHHHH---HhccCCchhH---HHHHHHHHHHHHhhccccCCHHHHHHHHHHH
Q 004445 48 PAAAEATILG----------LCQSPQPYKACQF---ILENSQVANA---RFQAAAAIRDAAMREWSFLTADEKKSLIGFC 111 (753)
Q Consensus 48 r~~Ae~~L~~----------f~~s~~~~~~c~~---ILe~S~~~y~---~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~l 111 (753)
|.++++++++ ++..++.++.|-. +|+....... +...+--+.+.|+.+-..-+++....+.+-+
T Consensus 196 ria~~~~~L~qsl~~lf~eglqsa~~~l~nclriYatld~t~~ae~lfr~~vvapyi~evI~eq~~e~sp~gl~~~ykqi 275 (705)
T KOG2307|consen 196 RIAAEKIILSQSLAVLFAEGLQSAAGDLQNCLRIYATLDLTESAESLFRLLVVAPYIAEVINEQHDETSPSGLLKLYKQI 275 (705)
T ss_pred HHhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHH
Confidence 6666665443 4556777777744 4566555443 3445556777888777667778888888889
Q ss_pred HHHHHhc
Q 004445 112 LCFVMQH 118 (753)
Q Consensus 112 l~yl~~~ 118 (753)
++|+..+
T Consensus 276 lefv~~h 282 (705)
T KOG2307|consen 276 LEFVKKH 282 (705)
T ss_pred HHHHHHH
Confidence 9988733
No 43
>PF09058 L27_1: L27_1; InterPro: IPR015143 The L27 domain is a protein interaction module that exists in a large family of scaffold proteins, functioning as an organisation centre of large protein assemblies required for the establishment and maintenance of cell polarity. L27 domains form specific heterotetrameric complexes, in which each domain contains three alpha-helices []. ; PDB: 3LRA_A 1RSO_A.
Probab=20.50 E-value=1.6e+02 Score=24.15 Aligned_cols=33 Identities=12% Similarity=0.010 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhCCCC---HHHHHHHHHhhhc
Q 004445 28 LQSIMHSIEIACSSIQMHVN---PAAAEATILGLCQ 60 (753)
Q Consensus 28 l~~~~~~lE~~~~~ly~~~~---r~~Ae~~L~~f~~ 60 (753)
-..|++.||..|..+-.|.+ |..+|+++.-|+.
T Consensus 8 A~rALelLe~y~~~L~~~~D~~lr~~ierli~ifkS 43 (64)
T PF09058_consen 8 AHRALELLEEYHNKLSRPEDEELRTAIERLINIFKS 43 (64)
T ss_dssp HHHHHHHHHHHHHTTSSSS-CCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence 34567999999999988865 8999999999985
No 44
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=20.27 E-value=7.4e+02 Score=23.44 Aligned_cols=58 Identities=14% Similarity=0.041 Sum_probs=36.7
Q ss_pred CCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHhcC-----CCCchHHHHHHHHHH
Q 004445 75 SQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHA-----SSPEGYVQAKISSVA 134 (753)
Q Consensus 75 S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ll~yl~~~~-----~~l~~~V~~~l~~~l 134 (753)
+.||.++++|+++|+..+.+.-.. -.....=+.|+-+.+.--. +..+.-|++++..++
T Consensus 49 ~~n~~v~l~AL~LLe~~vkNCG~~--fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li 111 (139)
T cd03567 49 SPQEKEALQALTVLEACMKNCGER--FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELL 111 (139)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCHH--HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 788999999999999999985322 1222233556655333221 235678888866544
Done!