Query 004445
Match_columns 753
No_of_seqs 202 out of 405
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 01:27:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gjx_A Exportin-1; transport, 100.0 2.1E-27 7.3E-32 290.1 42.2 425 33-548 28-484 (1073)
2 4hat_C Exportin-1; heat repeat 100.0 1.3E-26 4.4E-31 284.2 43.9 523 21-653 11-571 (1023)
3 2x19_B Importin-13; nuclear tr 99.9 8.4E-25 2.9E-29 268.7 38.1 497 17-651 12-518 (963)
4 3a6p_A Exportin-5; exportin-5, 99.9 3.9E-24 1.3E-28 267.8 40.6 438 23-552 1-472 (1204)
5 3ibv_A Exportin-T; karyopherin 99.9 9.2E-22 3.1E-26 240.9 49.0 423 21-552 1-447 (980)
6 3m1i_C Exportin-1; heat repeat 99.9 9.6E-23 3.3E-27 252.9 40.0 424 33-550 16-460 (1049)
7 2x1g_F Cadmus; transport prote 99.9 2.9E-21 1E-25 237.6 35.5 464 33-580 7-492 (971)
8 4fdd_A Transportin-1; heat rep 99.4 4.4E-11 1.5E-15 144.9 25.3 151 23-186 7-161 (852)
9 1wa5_C Importin alpha RE-expor 99.3 9.6E-09 3.3E-13 126.2 44.5 143 33-185 5-155 (960)
10 2bpt_A Importin beta-1 subunit 99.0 7.7E-07 2.6E-11 106.9 39.9 189 34-255 5-211 (861)
11 1ibr_B P95, importin beta-1 su 98.8 4.6E-08 1.6E-12 108.6 14.4 186 34-255 2-204 (462)
12 1qgr_A Protein (importin beta 98.3 2.3E-05 7.8E-10 94.2 20.9 185 35-255 3-204 (876)
13 1u6g_C TIP120 protein, CAND1; 85.8 7.8 0.00027 48.1 15.6 145 33-186 6-167 (1230)
14 4hxt_A De novo protein OR329; 80.8 18 0.0006 35.0 13.0 223 35-347 4-244 (252)
15 4db8_A Armadillo-repeat protei 64.3 45 0.0016 32.3 11.4 134 35-181 14-166 (252)
16 3eiq_C Programmed cell death p 60.8 72 0.0024 33.9 12.5 108 32-144 217-329 (358)
17 4ffb_C Protein STU2; tubulin f 60.6 1.4E+02 0.0047 29.7 17.5 107 74-187 65-173 (278)
18 1x5b_A Signal transducing adap 59.0 1.1E+02 0.0039 28.3 13.7 122 33-163 18-145 (163)
19 2zu6_B Programmed cell death p 59.0 70 0.0024 33.1 11.9 123 12-144 151-278 (307)
20 1juq_A ADP-ribosylation factor 58.7 61 0.0021 30.5 10.4 63 33-95 16-81 (171)
21 4fdd_A Transportin-1; heat rep 58.4 2.7E+02 0.0093 32.5 34.0 131 48-185 338-474 (852)
22 3g2s_A C-terminal fragment of 57.4 1.2E+02 0.004 27.9 12.1 99 33-135 14-122 (149)
23 1elk_A Target of MYB1; superhe 53.6 56 0.0019 30.3 9.1 97 33-134 19-125 (157)
24 1qgr_A Protein (importin beta 52.0 3.3E+02 0.011 31.5 25.5 95 75-181 12-117 (876)
25 3ldz_A STAM-1, signal transduc 49.2 1.5E+02 0.0051 26.7 11.3 96 34-135 9-110 (140)
26 1wiz_A DNA-binding protein SAT 44.6 15 0.0005 31.7 3.1 81 10-109 1-92 (101)
27 1mhq_A ADP-ribosylation factor 43.4 1.9E+02 0.0066 26.3 11.5 97 34-134 5-111 (148)
28 3ul1_B Importin subunit alpha- 41.6 1.8E+02 0.0062 31.8 12.6 100 35-139 59-172 (510)
29 2jdq_A Importin alpha-1 subuni 41.3 1.3E+02 0.0045 31.6 11.1 139 35-183 22-180 (450)
30 4db6_A Armadillo repeat protei 41.0 2.2E+02 0.0075 26.3 11.8 123 48-182 29-167 (210)
31 2nsz_A Programmed cell death p 40.4 1.6E+02 0.0055 26.0 9.7 108 32-144 7-119 (129)
32 4fdd_B RNA-binding protein FUS 38.7 13 0.00044 24.0 1.3 14 11-24 2-15 (29)
33 2ion_A PDCD4, programmed cell 36.6 1.9E+02 0.0064 26.5 9.7 108 32-144 9-121 (152)
34 1ibr_B P95, importin beta-1 su 35.4 4E+02 0.014 27.7 32.4 59 76-144 13-71 (462)
35 4b8j_A Importin subunit alpha- 32.8 3.3E+02 0.011 29.5 12.9 141 33-183 74-233 (528)
36 3rru_A TOM1L1 protein; structu 32.6 1.8E+02 0.0063 26.6 8.9 99 33-135 19-126 (152)
37 4g4s_P Proteasome assembly cha 32.1 34 0.0012 34.8 4.2 27 287-313 242-268 (269)
38 1ug3_A EIF4GI, eukaryotic prot 31.1 3.6E+02 0.012 27.9 12.2 108 32-144 11-122 (339)
39 1dvp_A HRS, hepatocyte growth 28.9 3.4E+02 0.012 26.2 10.8 63 33-95 8-73 (220)
40 2vgl_A Adaptor protein complex 28.3 1.1E+02 0.0038 34.8 8.1 92 75-181 122-215 (621)
41 4hxt_A De novo protein OR329; 27.2 3.9E+02 0.013 25.0 11.8 140 35-186 88-245 (252)
42 3zyq_A Hepatocyte growth facto 23.7 4.3E+02 0.015 25.6 10.5 61 35-95 13-76 (226)
43 4db8_A Armadillo-repeat protei 22.7 4.7E+02 0.016 24.6 10.7 122 48-181 71-208 (252)
44 2qk1_A Protein STU2; STU2P, XM 20.5 5.9E+02 0.02 24.7 14.0 133 48-185 33-178 (249)
45 1wa5_B Importin alpha subunit; 20.4 8.1E+02 0.028 26.3 15.8 226 35-344 175-412 (530)
No 1
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.97 E-value=2.1e-27 Score=290.07 Aligned_cols=425 Identities=14% Similarity=0.158 Sum_probs=292.9
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHH
Q 004445 33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110 (753)
Q Consensus 33 ~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ 110 (753)
+.||+++.++|.|.+ |++|+++|.+|+++|++|..|..||++|++++++|||+++|++.|.++|+.+|+++|..||++
T Consensus 28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~ 107 (1073)
T 3gjx_A 28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKY 107 (1073)
T ss_dssp HHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 788999999999854 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCC-----CchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHHHHhhhC
Q 004445 111 CLCFVMQHASS-----PEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS 185 (753)
Q Consensus 111 ll~yl~~~~~~-----l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~Efs 185 (753)
|++|+.+...+ .++.+++|+++++|.|.|++|++. |++++.++.+.+. .++.++..++.+|..+.+|..
T Consensus 108 Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~----Wp~fi~dLv~~~~--~~~~~~~~~L~IL~~L~EEV~ 181 (1073)
T 3gjx_A 108 VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH----WPTFISDIVGASR--TSESLCQNNMVILKLLSEEVF 181 (1073)
T ss_dssp HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT----CTTHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh----ccHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHH
Confidence 99999985322 346778999999999999999984 9999999999997 377889999999999999965
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHhcccccccCCCCcc
Q 004445 186 PSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRK 265 (753)
Q Consensus 186 ~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~ 265 (753)
..... .++-.+..+.|..++.. +..||+++..+|.+. ....++..+|+++..+++|...+.
T Consensus 182 d~~~~--~l~~~r~~~lk~~L~~~-~~~Il~ll~~iL~~~-----------~~~~lv~~~L~~L~~~~sWI~i~~----- 242 (1073)
T 3gjx_A 182 DFSSG--QITQVKAKHLKDSMCNE-FSQIFQLCQFVMENS-----------QNAPLVHATLETLLRFLNWIPLGY----- 242 (1073)
T ss_dssp TSHHH--HBCHHHHHHHHHHHHHT-CHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHTTTSCTHH-----
T ss_pred hcccc--cccHHHHHHHHHHHHHH-HHHHHHHHHHHhccc-----------CCHHHHHHHHHHHHHHHHhcCHHH-----
Confidence 43211 23455677889999875 999999888887631 245788999999999999997654
Q ss_pred chhhhcccccccccCCCCCCccccccCCcchhHhhcccchHHHHHHHHHHHHhhcccCCCCCCcccHHHHHHHHHHHhcc
Q 004445 266 ISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSL 345 (753)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~cL~qLaSl 345 (753)
+.+++++++++..+ + .++.++..|.+||.++++.
T Consensus 243 ----------------------------------i~~~~ll~~L~~~~--L----------~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 243 ----------------------------------IFETKLISTLIYKF--L----------NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp ----------------------------------HHSSSHHHHHHHHT--S----------SSHHHHHHHHHHHHHHHHS
T ss_pred ----------------------------------hccchHHHHHHHHh--c----------CChHHHHHHHHHHHHHHhc
Confidence 56778888774222 1 1477999999999999998
Q ss_pred cCccccCCChhhHHHHHHHHHHHHHHhcCCchhhHHHhhhCCCh-hhHH-HHHHHHHHHHhhcChhhHHHhhhcc-Cchh
Q 004445 346 TGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSE-SEML-DGCRALLSIATVTTPFVFDRLLKSI-RPFG 422 (753)
Q Consensus 346 ~~~~f~~~~~~~r~~~l~~~l~~~~~il~~~~~~~~~~~~gl~~-~~~~-e~cr~l~rL~~~~~~~~l~~~~~~~-~~~~ 422 (753)
+.+ +....-.+.+..+|..+..+++....+..++..|..+ +++. .+||.+..+..+|. .++... ....
T Consensus 277 ~~~----~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~-----~lIe~~p~~~~ 347 (1073)
T 3gjx_A 277 SVS----QYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHG-----QLLEKRLNLRE 347 (1073)
T ss_dssp CSG----GGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH-----HHHHHCGGGHH
T ss_pred ccc----chHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHH-----HHHhcCccchH
Confidence 532 1222334566677777777886555567777666443 4554 58888877777762 122111 1111
Q ss_pred hHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHhhcccc----ccCCCC---------CCChHHhhhHHHHHH
Q 004445 423 TLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLD----STGRNV---------VLPLEVRNAAASLFA 489 (753)
Q Consensus 423 ~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~s~~----~~~~~~---------~~p~~l~~~~~~I~~ 489 (753)
.+...-++ ++.. +..+ -.|.+.+++++|..|++.+- +..... .+|.....| ..|+.
T Consensus 348 ~l~~~l~~---ll~~----s~~~---d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y-~~i~~ 416 (1073)
T 3gjx_A 348 ALMEALHY---MLLV----SEVE---ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLY-LTVLS 416 (1073)
T ss_dssp HHHHHHHH---HHHH----TTCS---CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTT-HHHHH
T ss_pred HHHHHHHH---HHHH----hCCC---cHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHH-HHHHH
Confidence 22111111 1111 1111 35899999999999988641 110000 122211112 23333
Q ss_pred HH---HHhhcccccccccCCCCccchh-----h-hcHHHHHHHHHHHHHHHHHcHhhhHHHHHHHHHH
Q 004445 490 LI---VESELKVASASAMDDNGEFNYL-----Q-ASISAMDERLSSYALIARAAIDATVPLLTRLFSE 548 (753)
Q Consensus 490 ~Y---i~srL~~~~~~~~~d~d~de~~-----~-~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~ll~~ 548 (753)
.. +-+|+..|+.....|+|+.|-. + ++...|+-.=+++..+....++.+...+.+.+.+
T Consensus 417 ~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~ 484 (1073)
T 3gjx_A 417 KVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQN 484 (1073)
T ss_dssp HHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 22 4589998875432222222211 1 1223343333444666777788888877766654
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.96 E-value=1.3e-26 Score=284.20 Aligned_cols=523 Identities=13% Similarity=0.139 Sum_probs=339.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCChHHHHHHHhccCCchhHHHHHHHHHHHHHhhcccc
Q 004445 21 GPADLAKLQSIMHSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSF 98 (753)
Q Consensus 21 ~~md~~~l~~~~~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~ 98 (753)
++|| + ++||++++.+|.|.+ |++|+++|.+|+++|++|..|..||+++++++++|||+++|++.|.++|+.
T Consensus 11 ~~~d---v----~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~ 83 (1023)
T 4hat_C 11 NDLD---I----ALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKL 83 (1023)
T ss_dssp SCCC---H----HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCCC---H----HHHHHHHHHHhCCChHHHHHHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 5677 5 778999999999865 899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHH
Q 004445 99 LTADEKKSLIGFCLCFVMQHASSP-----EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIG 173 (753)
Q Consensus 99 l~~~~r~~lr~~ll~yl~~~~~~l-----~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~g 173 (753)
+|+++|..||++|++++.+...+. +++|++|++++++.|.|+.|++ .|+++++++.+.++ .++.++..+
T Consensus 84 L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~----~Wp~~l~dL~~~l~--~~~~~~~~~ 157 (1023)
T 4hat_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ----NWPEFIPELIGSSS--SSVNVCENN 157 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHTT--TCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh----hchHHHHHHHHHhc--CCHHHHHHH
Confidence 999999999999999998864222 5899999999999999999998 49999999999997 467788999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHhc
Q 004445 174 INFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQIL 253 (753)
Q Consensus 174 l~iL~~lv~Efs~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~L 253 (753)
+.+|..+.+|....... .++-.++++.|..++.. ++.||+++.++|... ....++..+|+++..++
T Consensus 158 L~iL~~L~EEV~~~~~~--~l~~~r~~~lk~~l~~~-~~~I~~ll~~iL~~~-----------~~~~l~~~~L~~l~s~l 223 (1023)
T 4hat_C 158 MIVLKLLSEEVFDFSAE--QMTQAKALHLKNSMSKE-FEQIFKLCFQVLEQG-----------ASSSLIVATLESLLRYL 223 (1023)
T ss_dssp HHHHHHHHHHHHTSCTT--TSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC-----------SSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhc--cchHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHHH
Confidence 99999999985432111 34567888899999776 899999998888641 13467899999999999
Q ss_pred ccccccCCCCccchhhhcccccccccCCCCCCccccccCCcchhHhhcccchHHHHHHHHHHHHhhcccCCCCCCcccHH
Q 004445 254 NWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAV 333 (753)
Q Consensus 254 swdF~~~~~d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~ 333 (753)
+|.+.+. +.++++++++|+.+.. ++.++.
T Consensus 224 ~WI~i~~---------------------------------------i~~~~ll~~l~~~~L~------------~~~~r~ 252 (1023)
T 4hat_C 224 HWIPYRY---------------------------------------IYETNILELLSTKFMT------------SPDTRA 252 (1023)
T ss_dssp TTSCTHH---------------------------------------HHSSSHHHHHHTHHHH------------SHHHHH
T ss_pred HhCCHHH---------------------------------------hcchhHHHHHHHHHcC------------CHHHHH
Confidence 9987764 5667889999843332 377999
Q ss_pred HHHHHHHHHhcccCccccCC--ChhhHHHHHHHHHHHH-HHhcCCchhhHHHhhhCCC-hhhHH-HHHHHHHHHHhhcCh
Q 004445 334 SARKLIVQLCSLTGTVFPSD--NGKMQEHHLLQLLSGI-LEWVDPPDVVAQAIESGKS-ESEML-DGCRALLSIATVTTP 408 (753)
Q Consensus 334 ~al~cL~qLaSl~~~~f~~~--~~~~r~~~l~~~l~~~-~~il~~~~~~~~~~~~gl~-~~~~~-e~cr~l~rL~~~~~~ 408 (753)
.|.+||.++++.+.+ ++. .++.-...+..++..+ ..++++...+..++..|.. +.++. .+||++..+...|.
T Consensus 253 ~A~ecL~eIv~~~~~--~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~- 329 (1023)
T 4hat_C 253 ITLKCLTEVSNLKIP--QDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNR- 329 (1023)
T ss_dssp HHHHHHHHHHTSCCC--SSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHG-
T ss_pred HHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHH-
Confidence 999999999986521 111 1111223333444444 4455443445555655543 34544 58888877777663
Q ss_pred hhHHHhhhccCchhhHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHhhccccccCCCCCCChHHhhhHHHHH
Q 004445 409 FVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLF 488 (753)
Q Consensus 409 ~~l~~~~~~~~~~~~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~s~~~~~~~~~~p~~l~~~~~~I~ 488 (753)
.++... ..+...+..+...++.. + .. + -.+.+.+++++|..+.+++ |. ..........+..++.
T Consensus 330 ----~li~~~--~~~~~~l~~~l~~Ll~~-~--~~-~---d~ei~~~tl~FW~~L~~~l-~~--e~~~~~~~~~~~~~L~ 393 (1023)
T 4hat_C 330 ----ALLESD--ESLRELLLNAHQYLIQL-S--KI-E---ERELFKTTLDYWHNLVADL-FY--EPLKKHIYEEICSQLR 393 (1023)
T ss_dssp ----GGGTSC--GGGHHHHHHHHHHHHHH-T--TS-S---CHHHHHHHHHHHHHHHHHH-TT--STTTGGGGHHHHHHHH
T ss_pred ----HHHhCC--cchhHHHHHHHHHHHHh-h--CC-C---cHHHHHHHHHHHHHHHHHH-Hh--chHHHHHHHHHHHHHH
Confidence 122221 11122211111112221 1 11 1 2488999999999999853 21 1001111223344566
Q ss_pred HHHHHhhcccccccc--cCC-CCc-cch--hhhcHHHHHHHHHHHHHHHHHcHhhhHHHHHHHHHHHHHHHhcCCCCCCc
Q 004445 489 ALIVESELKVASASA--MDD-NGE-FNY--LQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDP 562 (753)
Q Consensus 489 ~~Yi~srL~~~~~~~--~~d-~d~-de~--~~~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~ll~~~~~~l~~~~~~~~~ 562 (753)
.. +-.|+..|+... .+| ++. +|. ..|+.+.|.+-=+.+..++...+..+.+.+.+.+.+.. .+. .+
T Consensus 394 ~v-li~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l---~~~----~~ 465 (1023)
T 4hat_C 394 LV-IIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQI---DGS----EW 465 (1023)
T ss_dssp HH-HHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH---SST----TC
T ss_pred HH-HHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHh---cCC----CC
Confidence 56 345688776331 111 111 111 11233444433377777888888888887777665432 111 11
Q ss_pred chhhhhHHHHHHHHHhHhccCCC-Ccccccchhhhhhhhhhccc--c--cChHH-----HHHHHHHHHHHHh-------c
Q 004445 563 TETLEELYSLLLITGHVLADEGE-GEIPVVPNAIQTHFVDTIEA--A--KHPVV-----LLCGSIIKFAEWS-------L 625 (753)
Q Consensus 563 ~~~~E~LhWLvli~G~~Lad~~~-Ge~p~iP~~i~~~~~~~~~~--~--~d~vv-----~L~~~v~~l~~~~-------l 625 (753)
. +..+-=.++..|++..+..+ +|.+.+|.-+... .+..+. . ..+++ -++++.-+|.... +
T Consensus 466 -~-W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~L-l~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl 542 (1023)
T 4hat_C 466 -S-WHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDL-LDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVI 542 (1023)
T ss_dssp -C-HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHH-HHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHH
T ss_pred -C-HHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH-HHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1 33334455666776654332 3566666655432 111110 1 11222 2333333443311 1
Q ss_pred C---ccccccCCCHHHHHHHHHHHHHHHHhh
Q 004445 626 D---PEARASVFSPRLMEAIVWFLARWSQTY 653 (753)
Q Consensus 626 ~---~~~~~~~~SP~L~~a~lwfl~r~~~~Y 653 (753)
. .++. . -.|++..+--|-|..++...
T Consensus 543 ~~L~~~l~-~-~~~~v~~~A~~al~~l~~~c 571 (1023)
T 4hat_C 543 LKLFEFMH-E-THEGVQDMACDTFIKIVQKC 571 (1023)
T ss_dssp HHHHHHTT-C-SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh-c-CCHHHHHHHHHHHHHHHHHH
Confidence 1 1111 1 25889999999998888874
No 3
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.94 E-value=8.4e-25 Score=268.68 Aligned_cols=497 Identities=14% Similarity=0.085 Sum_probs=302.1
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHhhhcCCChHHHHHHHhccCCchhHHHHHHHHHHHHHh
Q 004445 17 GGGGGPADLAKLQSIMHSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAM 93 (753)
Q Consensus 17 ~~~~~~md~~~l~~~~~~lE~~~~~ly~~~~---r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~ 93 (753)
|.|+.+||..++ ++|+++++.+|.+++ |++||++|.+|+++|++|..|..||+++.+++++|+|+.+|++.|.
T Consensus 12 ~~~~~~m~~~~~----~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~ 87 (963)
T 2x19_B 12 GAGAAPALDFTV----ENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKIS 87 (963)
T ss_dssp ------CCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHH
T ss_pred ccccccCCHhhH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 334467887778 889999999876544 8999999999999999999999999999999999999999999999
Q ss_pred hccccCCHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHccc----CCchh
Q 004445 94 REWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGI----HGVDT 169 (753)
Q Consensus 94 ~~W~~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~----~s~~~ 169 (753)
++|+.+|+++|..||++|++++.+.. +.+++|++|++.+++.|.|++|++. |++++.++.+.+++. .++.+
T Consensus 88 ~~w~~l~~~~~~~ir~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p~~----Wp~~l~~l~~~~~~~~~~~~~~~~ 162 (963)
T 2x19_B 88 RYWSDIPTDQYESLKAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMPDA----WPCAVADMVRLFQAEDSPVDGQGR 162 (963)
T ss_dssp HCGGGSCGGGHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTTT----STTHHHHHHHHHCC------CHHH
T ss_pred hCHHhCCHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCccc----cchHHHHHHHHHhhhccCCCcHHH
Confidence 99999999999999999999999865 4579999999999999999999873 999999999988631 14568
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHH
Q 004445 170 QFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLL 249 (753)
Q Consensus 170 ~~~gl~iL~~lv~Efs~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~ 249 (753)
+..++.+|..+.+|....+. +.+.+.+++..++. .++.|+.++.+++.+. .+ ...+...+|+++
T Consensus 163 ~~~~l~iL~~l~ee~~~~~~-----~~~~r~~~~~~l~~-~~~~i~~ll~~~l~~~-------~~---~~~~~~~~l~~l 226 (963)
T 2x19_B 163 CLALLELLTVLPEEFQTSRL-----PQYRKGLVRTSLAV-ECGAVFPLLEQLLQQP-------SS---PSCVRQKVLKCF 226 (963)
T ss_dssp HHHHHHHHHHHHHHHTTCCC--------------CCSGG-GHHHHHHHHHHHHSCT-------TC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHhcccC-----cHHHHHHHHHHHHH-HHHHHHHHHHHHHhCC-------CC---chHHHHHHHHHH
Confidence 89999999999998754321 22333445556655 4788888766666321 01 123667777666
Q ss_pred HHhcccccccCCCCccchhhhcccccccccCCCCCCccccccCCcchhHhhcccchHHHHHHHHHHHHhhcccCCCCCCc
Q 004445 250 HQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDC 329 (753)
Q Consensus 250 ~~~LswdF~~~~~d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~ 329 (753)
.+|...+... ...+.+++.+|+... ++
T Consensus 227 ---~~wi~~~~~~-------------------------------------~~~~~ll~~l~~~l~-------------~~ 253 (963)
T 2x19_B 227 ---SSWVQLEVPL-------------------------------------QDCEALIQAAFAALQ-------------DS 253 (963)
T ss_dssp ---HHHHTSSCCG-------------------------------------GGTHHHHHHHHHHTT-------------ST
T ss_pred ---HHHHcCCCCc-------------------------------------ccchHHHHHHHHHhC-------------Cc
Confidence 3587644310 123557777776541 37
Q ss_pred ccHHHHHHHHHHHhcccCccccCCChhhHHHHHHHHHHHHHHhcCCchhhHHHhhhCCChhhHHHHHHHHHHHHhhcChh
Q 004445 330 PIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPF 409 (753)
Q Consensus 330 ~l~~~al~cL~qLaSl~~~~f~~~~~~~r~~~l~~~l~~~~~il~~~~~~~~~~~~gl~~~~~~e~cr~l~rL~~~~~~~ 409 (753)
+++..+++||.++.+.+.+ . .+..++..++.++...+. .+..+... -+.+.+..+|+++.++...++ .
T Consensus 254 ~~~~~a~~~l~~i~~~~~~---~----~~~~~~~~l~~~~~~~~~---~~~~~~~~-~d~~~~~~~~~l~~~~~~~~~-~ 321 (963)
T 2x19_B 254 ELFDSSVEAIVNAISQPDA---Q----RYVNTLLKLIPLVLGLQE---QLRQAVQN-GDMETSHGICRIAVALGENHS-R 321 (963)
T ss_dssp TTHHHHHHHHHHHHTCTTG---G----GCHHHHHHHHHHHHTTHH---HHHHHHHT-TCHHHHHHHHHHHHHHHHHHH-H
T ss_pred hHHHHHHHHHHHHHccccc---c----cCHHHHHHHHHHHHhhHH---HHHHHHHC-CCHHHHHHHHHHHHHHHHHhH-H
Confidence 8999999999999985432 1 134567777776655431 11111221 123667889999999887763 1
Q ss_pred hHHHhhhccCchhhHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHhhccccccCCC--CCCChHHhhhHHHH
Q 004445 410 VFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRN--VVLPLEVRNAAASL 487 (753)
Q Consensus 410 ~l~~~~~~~~~~~~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~s~~~~~~~--~~~p~~l~~~~~~I 487 (753)
.+..-... ...+..++..++. .+.... .+....+....++++|..++........+ .........+..+|
T Consensus 322 ~l~~~~~~------~~~~~~~l~~ll~-~~~~~~-~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l 393 (963)
T 2x19_B 322 ALLDQVEH------WQSFLALVNMIMF-CTGIPG-HYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQL 393 (963)
T ss_dssp HHHHCGGG------HHHHHHHHHHHHH-HHTCSS-CTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCccc------hHHHHHHHHHHHH-HHcCCC-CCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 12110000 0112222222222 122110 00111233678899999998854322100 00001112344555
Q ss_pred HHHHHHhhcccccccccCCCCccchhhhcHH-HHHHHHHHHHHHHHHcHhhhHHHHHHHHHHHHHHHhcCCCCCCcchhh
Q 004445 488 FALIVESELKVASASAMDDNGEFNYLQASIS-AMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETL 566 (753)
Q Consensus 488 ~~~Yi~srL~~~~~~~~~d~d~de~~~~d~~-~~~eqL~~ia~l~R~~~~~t~~lL~~ll~~~~~~l~~~~~~~~~~~~~ 566 (753)
....+. ++..++....++. |++++++.. ...+--+.+-.+++..+..+++.+.+.+.+.++++. .+ ..+.
T Consensus 394 ~~~ll~-~~~~p~~~~~~~~--~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~---~~---~~w~ 464 (963)
T 2x19_B 394 VDVLLH-KAQFPSDEEYGFW--SSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSE---EP---YSWQ 464 (963)
T ss_dssp HHHHHH-HHSCCCHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCC---CS---CCHH
T ss_pred HHHHHH-HHcCCCcccccCC--ChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcC---CC---CchH
Confidence 555443 4443322111111 111112221 223444566677778788888888888887776551 11 1222
Q ss_pred hhHHHHHHHHHhHhccCCCCcccccchhhhhhhhhhcccccChHHHHHHHHHHHHHHhcCccccccCCCHHHHHHHHHHH
Q 004445 567 EELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFL 646 (753)
Q Consensus 567 E~LhWLvli~G~~Lad~~~Ge~p~iP~~i~~~~~~~~~~~~d~vv~L~~~v~~l~~~~l~~~~~~~~~SP~L~~a~lwfl 646 (753)
+..=.++..|++..+-.+++ .+.+.. +++... .+. . -+|.|..+.+|++
T Consensus 465 -~~eaal~al~~i~~~~~~~~-------------------~~~l~~----l~~~l~-~l~---~---~~~~vr~~~~~~l 513 (963)
T 2x19_B 465 -HTEALLYGFQSIAETIDVNY-------------------SDVVPG----LIGLIP-RIS---I---SNVQLADTVMFTI 513 (963)
T ss_dssp -HHHHHHHHHHHHTTSCCSSC-------------------CSHHHH----HHHHGG-GSC---C---CSHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhcCchh-------------------hHHHHH----HHHHHH-hCC---C---CcHHHHHHHHHHH
Confidence 22334666666543322111 122222 333211 111 0 2689999999999
Q ss_pred HHHHH
Q 004445 647 ARWSQ 651 (753)
Q Consensus 647 ~r~~~ 651 (753)
+||+.
T Consensus 514 ~~~~~ 518 (963)
T 2x19_B 514 GALSE 518 (963)
T ss_dssp HHTHH
T ss_pred HHHHH
Confidence 99985
No 4
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.94 E-value=3.9e-24 Score=267.77 Aligned_cols=438 Identities=11% Similarity=0.091 Sum_probs=294.8
Q ss_pred CChhhHHHHHHHHHHHHHHhhCCC-C---HHHHHHHHHhhhcCCChHHHHHHHhc-cCCchhHHHHHHHHHHHHHhhccc
Q 004445 23 ADLAKLQSIMHSIEIACSSIQMHV-N---PAAAEATILGLCQSPQPYKACQFILE-NSQVANARFQAAAAIRDAAMREWS 97 (753)
Q Consensus 23 md~~~l~~~~~~lE~~~~~ly~~~-~---r~~Ae~~L~~f~~s~~~~~~c~~ILe-~S~~~y~~f~A~~~L~~~i~~~W~ 97 (753)
|+++++++++++++++++.+|.|. + |++||++|.+|+++|+.|..|..+|. .+.+++++|||+.+|++.|.++|.
T Consensus 1 ~~~~~~~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 1 MAMDQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred CChhhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 455667777899999999999983 3 89999999999999999999999887 788999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHH
Q 004445 98 FLTADEKKSLIGFCLCFVMQHAS---SPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGI 174 (753)
Q Consensus 98 ~l~~~~r~~lr~~ll~yl~~~~~---~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl 174 (753)
.++.++|..||+++++++.+... +.+++|+++++++++.|.|++|++ .|++++.++.+++.+ ++.++..++
T Consensus 81 ~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~--~~~~~e~~L 154 (1204)
T 3a6p_A 81 GMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ--GETQTELVM 154 (1204)
T ss_dssp GSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT--CHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC--CHHHHHHHH
Confidence 99999999999999999987632 157999999999999999999996 499999999999974 677889999
Q ss_pred HHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh------h-ccchhhhHHHHHHHHHH
Q 004445 175 NFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQI------I-ESDAAASEVKACTAALR 247 (753)
Q Consensus 175 ~iL~~lv~Efs~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If~l~~~~L~~~~~~~------~-~~~~~~~~~~l~~~~L~ 247 (753)
.+|..+.+|+..... +....+++++..+++. ++.||.++.++|++..+.. . +.+.......++.++|+
T Consensus 155 ~iL~~L~Eev~~~~~----~~~~r~~~l~~~l~~~-~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~ 229 (1204)
T 3a6p_A 155 FILLRLAEDVVTFQT----LPPQRRRDIQQTLTQN-MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALN 229 (1204)
T ss_dssp HHHHHHHHHHHTSCC----SCHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccc----hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHH
Confidence 999999999654321 2336667788999876 9999999999997643210 0 00111234568999999
Q ss_pred HHHHhcccccccCCCCccchhhhcccccccccCCCCCCccccccCCcchhHhhcc--cchHHHHHHHHHHHHhhcccCCC
Q 004445 248 LLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALIS--SGHIVWLLNLYSALRQKFSSEGY 325 (753)
Q Consensus 248 l~~~~LswdF~~~~~d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~--~~~l~llf~ly~~lr~~~~~~~~ 325 (753)
++.++++|...+. +.+ +.+++++|.++.
T Consensus 230 ~l~~~l~Wi~~~~---------------------------------------i~~~~~~ll~~l~~~l~----------- 259 (1204)
T 3a6p_A 230 TLAGYIDWVSMSH---------------------------------------ITAENCKLLEILCLLLN----------- 259 (1204)
T ss_dssp HHHTTTTTSCHHH---------------------------------------HHTTTSHHHHHHHHGGG-----------
T ss_pred HHHHHHhccCHHH---------------------------------------HHhccchHHHHHHHHcC-----------
Confidence 9999999987654 222 247888875432
Q ss_pred CCCcccHHHHHHHHHHHhcccCccccCCChhhHHHHHHHH----HHHHHHhcCCchhhHHHhhhCCChhhHHHHHHHHHH
Q 004445 326 WLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQL----LSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLS 401 (753)
Q Consensus 326 ~~~~~l~~~al~cL~qLaSl~~~~f~~~~~~~r~~~l~~~----l~~~~~il~~~~~~~~~~~~gl~~~~~~e~cr~l~r 401 (753)
+++++..|++||+++++.+.+ + .++..++..+ +.++....... ...++ +++-+++|+.+.+
T Consensus 260 --~~~lr~~A~ecL~~i~s~~~~--~----~~~~~li~~l~~~~l~~l~~~~~~~------~~~~~-~e~d~e~~k~l~~ 324 (1204)
T 3a6p_A 260 --EQELQLGAAECLLIAVSRKGK--L----EDRKPLMVLFGDVAMHYILSAAQTA------DGGGL-VEKHYVFLKRLCQ 324 (1204)
T ss_dssp --CTTTHHHHHHHHHHHHTCCSC--H----HHHGGGGGGGSHHHHHHHHHHHHTC------CCCSC-CHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHhCCCC--h----hhHHHHHHHHhhHHHHHHHHHhhcC------CCCCC-ccHHHHHHHHHHH
Confidence 378999999999999997753 1 1233233211 11222111000 00122 3445577777777
Q ss_pred HHhhcChhhHHHhhhcc---CchhhHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHhhccccccCCCCCCCh
Q 004445 402 IATVTTPFVFDRLLKSI---RPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPL 478 (753)
Q Consensus 402 L~~~~~~~~l~~~~~~~---~~~~~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~s~~~~~~~~~~p~ 478 (753)
+...+. ..+..++... .....+..+-.++..+ +.. + ..+.....+.+|.+++.+... . ..+
T Consensus 325 ll~~lg-~~l~~l~~~~~~~~~~~~l~~~l~~lL~~----t~~--~----~~~vs~~~l~fW~~ll~~~~~--~---~~~ 388 (1204)
T 3a6p_A 325 VLCALG-NQLCALLGADSDVETPSNFGKYLESFLAF----TTH--P----SQFLRSSTQMTWGALFRHEIL--S---RDP 388 (1204)
T ss_dssp HHHHHH-HHHHHHHHTCSSCCCCTTHHHHHHHHHHH----HTS--S----CHHHHHHHHHHHHHHHSCTTT--T---TCH
T ss_pred HHHHHH-HHHHHHHhccccccChhHHHHHHHHHHHH----HhC--c----cHHhHHHHHHHHHHHHhcccc--c---ccH
Confidence 776653 2233332210 0011122222222222 221 1 235556668999999986421 1 123
Q ss_pred HHhhhHHHHHHHHH--Hhhccccccccc-------CCCCccchh-hhcHHHHHHHHHHHHHHHHHcHhhhHHHHHHHHHH
Q 004445 479 EVRNAAASLFALIV--ESELKVASASAM-------DDNGEFNYL-QASISAMDERLSSYALIARAAIDATVPLLTRLFSE 548 (753)
Q Consensus 479 ~l~~~~~~I~~~Yi--~srL~~~~~~~~-------~d~d~de~~-~~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~ll~~ 548 (753)
.+..+.+++..... -.|+..|+.... +|.|++++. +.-+....+-.+.+-.+++..|..+++++.+.+.+
T Consensus 389 ~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~ 468 (1204)
T 3a6p_A 389 LLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKY 468 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34456667666641 135555542210 111111111 12233444677888899999999999888887766
Q ss_pred HHHH
Q 004445 549 RFAR 552 (753)
Q Consensus 549 ~~~~ 552 (753)
++..
T Consensus 469 ~l~~ 472 (1204)
T 3a6p_A 469 QLST 472 (1204)
T ss_dssp HHTC
T ss_pred HHhh
Confidence 6543
No 5
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.92 E-value=9.2e-22 Score=240.94 Aligned_cols=423 Identities=12% Similarity=0.125 Sum_probs=280.8
Q ss_pred CCCChhhHHHHHHHHHHHHHHhhCCC-C---HHHHHHHHHhhhcCCChHHHHHHHhccCC--chhHHHHHHHHHHHHHhh
Q 004445 21 GPADLAKLQSIMHSIEIACSSIQMHV-N---PAAAEATILGLCQSPQPYKACQFILENSQ--VANARFQAAAAIRDAAMR 94 (753)
Q Consensus 21 ~~md~~~l~~~~~~lE~~~~~ly~~~-~---r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~--~~y~~f~A~~~L~~~i~~ 94 (753)
|+||+ +++++|.+..|.|. + |++|+++|.+||++|++|..|..||.+++ +++++|||+++|++.|.
T Consensus 1 ~~m~~-------~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~- 72 (980)
T 3ibv_A 1 GPMSA-------QDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR- 72 (980)
T ss_dssp --CHH-------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH-
T ss_pred CCCCH-------HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-
Confidence 67884 45577776666663 3 89999999999999999999999999875 79999999999999999
Q ss_pred ccccCCHH----HHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCc-h
Q 004445 95 EWSFLTAD----EKKSLIGFCLCFVMQHA-SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGV-D 168 (753)
Q Consensus 95 ~W~~l~~~----~r~~lr~~ll~yl~~~~-~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~-~ 168 (753)
.++++ ++..||++|++++.+.. .+.+++|++|++++++.|.|+.|++ .|++++.++.+.+.+ +++ .
T Consensus 73 ---~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~----~Wp~~i~~l~~~~~~-~~~~~ 144 (980)
T 3ibv_A 73 ---EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS----NWNDFFASLQGVIAA-SSQSE 144 (980)
T ss_dssp ---HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHH-HCCHH
T ss_pred ---hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc----cCchHHHHHHHHhcC-CChhH
Confidence 68999 99999999999999843 1468999999999999999999998 499999999999975 233 4
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHH---HHHhhhhhhHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHH
Q 004445 169 TQFIGINFLESLVSEFSPSTSSAMGLPREFHEQC---RISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAA 245 (753)
Q Consensus 169 ~~~~gl~iL~~lv~Efs~~~ss~~gl~~~~Hrk~---k~sFe~~~L~~If~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~ 245 (753)
.....+++|..+-+|....+ +.++.+.+.|. |..+++.++..|+..++.+|.+.... ....+...+
T Consensus 145 ~~~~~LriL~~i~EEv~~~~---~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~--------~~~~l~~~~ 213 (980)
T 3ibv_A 145 FSNFYLKVLLSIGDEIADSL---VLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNA--------KNYGTVGLC 213 (980)
T ss_dssp HHHHHHHHHHHHHHHHCCCC---SCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--------TCHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhcc---cccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhcc--------CCHHHHHHH
Confidence 55678899997778876432 23455544444 88999888999999999999876521 244688999
Q ss_pred HHHHHHhcccccccCCCCccchhhhcccccccccCCCCCCccccccCCcchhHhhcccchHHHHHHHHHHHHhhcccCCC
Q 004445 246 LRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGY 325 (753)
Q Consensus 246 L~l~~~~LswdF~~~~~d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~ 325 (753)
|+++..+++|.+.+. +.++++++++|+...
T Consensus 214 L~~l~s~i~wi~~~~---------------------------------------i~~~~ll~~l~~~L~----------- 243 (980)
T 3ibv_A 214 LQVYAQWVSWININL---------------------------------------IVNEPCMNLLYSFLQ----------- 243 (980)
T ss_dssp HHHHHHHTTTSCHHH---------------------------------------HHCHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHhhcCHHh---------------------------------------hhcchHHHHHHHHcC-----------
Confidence 999999999987754 566778888886552
Q ss_pred CCCcccHHHHHHHHHHHhcccCccccCCChhhHHHHHHHHHHHHHHhcCCchhhHHHhhhCCCh-hhHHHHHHHHHHHHh
Q 004445 326 WLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSE-SEMLDGCRALLSIAT 404 (753)
Q Consensus 326 ~~~~~l~~~al~cL~qLaSl~~~~f~~~~~~~r~~~l~~~l~~~~~il~~~~~~~~~~~~gl~~-~~~~e~cr~l~rL~~ 404 (753)
+++++..|.+||.++.+-+.. ...+.+.+..+ .+..++.... ....+ +-...+||++..+..
T Consensus 244 --~~~~r~~A~ecL~ei~~k~~~------~~~k~~li~~l--~L~~~~~~l~-------~~~~D~d~~~~la~L~~~~ge 306 (980)
T 3ibv_A 244 --IEELRCAACETMTEIVNKKMK------PLEKLNLLNIL--NLNLFFSKSQ-------EQSTDPNFDEHVAKLINAQGV 306 (980)
T ss_dssp --SHHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHH--HHHHHHCC------------CCHHHHHHHHHHHHHHHH
T ss_pred --ChHHHHHHHHHHHHHHHcCCC------hhhHHHHHHHH--hHHHHHHHHh-------cccccHHHHHHHHHHHHHHHH
Confidence 367999999999999997642 22455555443 3444554211 00122 333457777766654
Q ss_pred hcChhhHHHhhhccCc---h----hhHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHhhccccccCCCCCCC
Q 004445 405 VTTPFVFDRLLKSIRP---F----GTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLP 477 (753)
Q Consensus 405 ~~~~~~l~~~~~~~~~---~----~~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~s~~~~~~~~~~p 477 (753)
.+. .+ ..... . .....+..+.-.++.. +. .++ .+.....+.+|..++....+.....+.+
T Consensus 307 ~l~-----~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~-~~--~~~----deVs~~t~~Fw~~~l~~~~~~~~~~~~~ 373 (980)
T 3ibv_A 307 ELV-----AI-KSDPSELSPELKENCSFQLYNLFPYLIRY-LS--DDY----DETSTAVFPFLSDLLVSLRKESSSKELS 373 (980)
T ss_dssp HHH-----HH-HTSCC--CHHHHHHHHHHHHHTHHHHHHH-HT--CSS----HHHHHTTHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHH-----HH-ccCccccchhhhhhHHHHHHHHHHHHHHH-hC--CCc----hhHHHHHHHHHHHHHHHHHhcccccccc
Confidence 331 11 11000 0 0111121222112221 11 122 2666678889999988665543222345
Q ss_pred hHHhhhHHHHHHHHHHhhcccccccccCCCCccchhhhcHHHHHHHH-HHHHHHHHHcHhhhHHHHHHHHHHHHHH
Q 004445 478 LEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERL-SSYALIARAAIDATVPLLTRLFSERFAR 552 (753)
Q Consensus 478 ~~l~~~~~~I~~~Yi~srL~~~~~~~~~d~d~de~~~~d~~~~~eqL-~~ia~l~R~~~~~t~~lL~~ll~~~~~~ 552 (753)
.....+..++... +-.|+..++....++++|+|+ +++-..|.-++ ..+-.+++..++..+..+...+...+++
T Consensus 374 ~~~~~~l~~Ll~~-li~k~~yp~d~~~~~~~d~ed-~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~ 447 (980)
T 3ibv_A 374 ASLKEFLKSLLEA-IIKKMKYDESQEWDDDPDSEE-EAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLST 447 (980)
T ss_dssp HHHHHHHHHHHHH-HHHTTSCCTTCCCCCCSSSST-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHccCCCccccccccchhH-HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 5556677788877 556788876533222111111 11112233333 3344666777888888555555555544
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.92 E-value=9.6e-23 Score=252.89 Aligned_cols=424 Identities=13% Similarity=0.156 Sum_probs=277.4
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHH
Q 004445 33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110 (753)
Q Consensus 33 ~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ 110 (753)
++|+++++.+|.|.+ |++||++|.+|+++|++|..|..||+++++++++|+|+.+|++.|.++|..+++++|..||++
T Consensus 16 ~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ 95 (1049)
T 3m1i_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNF 95 (1049)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHH
Confidence 778999999999864 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCC-----chHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHHHHhhhC
Q 004445 111 CLCFVMQHASSP-----EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS 185 (753)
Q Consensus 111 ll~yl~~~~~~l-----~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~Efs 185 (753)
|++++.+.+.+. +++|+++++++++.|.|++|++ .|+++++++.+.++ .++.++..++.+|..+.+|..
T Consensus 96 ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~----~Wp~ll~~L~~~~~--~~~~~~~~~l~~L~~l~eev~ 169 (1049)
T 3m1i_C 96 VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ----NWPEFIPELIGSSS--SSVNVCENNMIVLKLLSEEVF 169 (1049)
T ss_dssp HHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHHc--cChHHHHHHHHHHHHHHHHHH
Confidence 999999875333 3799999999999999999996 49999999999997 466677777777777777765
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHhcccccccCCCCcc
Q 004445 186 PSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRK 265 (753)
Q Consensus 186 ~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~ 265 (753)
..+...++..... ..|..|++ .+..||.++.++|+.. ....+...+|+++.++++|...+.
T Consensus 170 ~~~~~~~~~~r~~--~lk~~l~~-~~~~i~~~~~~~l~~~-----------~~~~~~~~aL~~l~~~l~wi~~~~----- 230 (1049)
T 3m1i_C 170 DFSAEQMTQAKAL--HLKNSMSK-EFEQIFKLCFQVLEQG-----------SSSSLIVATLESLLRYLHWIPYRY----- 230 (1049)
T ss_dssp TSCTTTSCHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHTTTSCTHH-----
T ss_pred HhcchhhhhHHHH--HHHHHHHH-HHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHhhCCHHH-----
Confidence 4322223333333 34678877 4999999988888642 134688999999999999987654
Q ss_pred chhhhcccccccccCCCCCCccccccCCcchhHhhcccchHHHHHHHHHHHHhhcccCCCCCCcccHHHHHHHHHHHhcc
Q 004445 266 ISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSL 345 (753)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~cL~qLaSl 345 (753)
+.++.+++++|+.|.. +++++..+++||+++.+.
T Consensus 231 ----------------------------------~~~~~ll~~l~~~~l~------------~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 231 ----------------------------------IYETNILELLSTKFMT------------SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp ----------------------------------HHSSSHHHHHHTHHHH------------SHHHHHHHHHHHHHHHHC
T ss_pred ----------------------------------HhhhhHHHHHHHHhCC------------CHhHHHHHHHHHHHHHhC
Confidence 3556788988876653 377999999999999987
Q ss_pred cCccccCCChhhHHHHH----HHHHHHHHH-hcCCchhhHHHhhhCCC-hhhH-HHHHHHHHHHHhhcChhhHHHhhhcc
Q 004445 346 TGTVFPSDNGKMQEHHL----LQLLSGILE-WVDPPDVVAQAIESGKS-ESEM-LDGCRALLSIATVTTPFVFDRLLKSI 418 (753)
Q Consensus 346 ~~~~f~~~~~~~r~~~l----~~~l~~~~~-il~~~~~~~~~~~~gl~-~~~~-~e~cr~l~rL~~~~~~~~l~~~~~~~ 418 (753)
+- ++.. ......+ ..++..+.. ++++.......+..+.+ +.++ ..+|+.+..+...+. .++...
T Consensus 265 ~~---~~~~-~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~-----~~~~~~ 335 (1049)
T 3m1i_C 265 KI---PQDN-DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNR-----ALLESD 335 (1049)
T ss_dssp CC---CTTC-HHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHH-----HHHHSC
T ss_pred CC---Ccch-hhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHH-----HHHcCC
Confidence 52 2211 0011233 333443333 55332222222332322 3333 468888877665541 111110
Q ss_pred -CchhhHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHhhccccccCCCCCCChHHhhhHHHHHHHHHHhhcc
Q 004445 419 -RPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELK 497 (753)
Q Consensus 419 -~~~~~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~s~~~~~~~~~~p~~l~~~~~~I~~~Yi~srL~ 497 (753)
....++..+-.++..+ +. .. ..+....++++|..++..+-. . .........+..++... +-.++.
T Consensus 336 ~~~~~~l~~~l~~ll~~----~~--~~----d~~v~~~~lefw~~l~~~l~~-~--~~~~~~~~~~l~~Lv~~-ll~~m~ 401 (1049)
T 3m1i_C 336 ESLRELLLNAHQYLIQL----SK--IE----ERELFKTTLDYWHNLVADLFY-E--PLKKHIYEEICSQLRLV-IIENMV 401 (1049)
T ss_dssp GGGHHHHHHHHHHHHHH----HT--SS----CHHHHHHHHHHHHHHHHHHHH-S--TTCGGGGHHHHHHHHHH-HHHTCC
T ss_pred hhhHHHHHHHHHHHHHH----Hc--CC----cHHHHHHHHHHHHHHHHHHHh-c--hhHHHHHHHHHHHHHHH-HHHhcC
Confidence 0111222222222211 11 11 246678889999999884310 0 00112233456677765 444666
Q ss_pred cccccc-cCCCCc-----cchhhhcHHHHHHHHHHHHHHHHHcHhhhHHHHHHHHHHHH
Q 004445 498 VASASA-MDDNGE-----FNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERF 550 (753)
Q Consensus 498 ~~~~~~-~~d~d~-----de~~~~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~ll~~~~ 550 (753)
.++... .+|++. +++++|++..+..--+.+-.+++..+..+++.+.+.+.+..
T Consensus 402 ~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l 460 (1049)
T 3m1i_C 402 RPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQI 460 (1049)
T ss_dssp CCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh
Confidence 554221 111110 00011222333333334445557778888887777776543
No 7
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.89 E-value=2.9e-21 Score=237.60 Aligned_cols=464 Identities=11% Similarity=0.033 Sum_probs=271.8
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHH
Q 004445 33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110 (753)
Q Consensus 33 ~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ 110 (753)
++|+++++.+|.|.+ |++||++|.+|+++|++|..|..||+.+++++++|+|+.+|++.|.++|..+|+++|..||++
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ 86 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQK 86 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHH
Confidence 788999999998753 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccC-----CchhHHHHHHHHHHHHhhhC
Q 004445 111 CLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIH-----GVDTQFIGINFLESLVSEFS 185 (753)
Q Consensus 111 ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~-----s~~~~~~gl~iL~~lv~Efs 185 (753)
|++++.+.. +.+++|++|++.+++.|.|++|+ .|++++.++.+.+++.. ++.++..++.+|..+.+|..
T Consensus 87 ll~~l~~~~-~~~~~vr~kl~~~la~i~~~~~p-----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~ 160 (971)
T 2x1g_F 87 ILESIVRFA-GGPKIVLNRLCISLGAYIVHMLG-----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQ 160 (971)
T ss_dssp HHHHHHHHT-TSCHHHHHHHHHHHHHHHHHTTC-----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHccc-----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHh
Confidence 999999876 45799999999999999999998 39999999999987411 45788999999999999865
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHhcc--cccccCCCC
Q 004445 186 PSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILN--WDFQFDTSG 263 (753)
Q Consensus 186 ~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Ls--wdF~~~~~d 263 (753)
..+.. . +....+..++. .+..|+.++.++|..... .........+...+|+++..++. |.+.+
T Consensus 161 ~~~~~--~----~r~~~~~~l~~-~~~~vl~ll~~~l~~~~~----~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---- 225 (971)
T 2x1g_F 161 VIHTS--V----KRVVLRAEIAK-RVQLVIHTVERYLKLQMN----RVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---- 225 (971)
T ss_dssp HCCCS--S----CHHHHHHHHHT-THHHHHHHHHHHHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----
T ss_pred ccCcH--H----HHHHHHHHHHH-HHHHHHHHHHHHHhcccC----CCCCccchhHHHHHHHHHHHHHhhCCcCcc----
Confidence 33211 1 11233455544 478888877777654321 00001123678888888888777 66443
Q ss_pred ccchhhhcccccccccCCCCCCccccccCCcchhHhhcccchHHHHHHH---HH-HHHhhcccCC-CCCCcccHHHHHHH
Q 004445 264 RKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNL---YS-ALRQKFSSEG-YWLDCPIAVSARKL 338 (753)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~l---y~-~lr~~~~~~~-~~~~~~l~~~al~c 338 (753)
.++.+++++|++ |. ..|.. ..|. ...+++++..|++|
T Consensus 226 -------------------------------------~~~~ll~~l~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~ 267 (971)
T 2x1g_F 226 -------------------------------------GCVTITAVLLEVVHKCYWPCIHA-GDGCMTADENELAESCLKT 267 (971)
T ss_dssp -------------------------------------GHHHHHHHHHHHHHHHHSSSCC----CCCCHHHHHHHHHHHHH
T ss_pred -------------------------------------ccccHHHHHHhhhhhhccccccc-cccccCcCCcHHHHHHHHH
Confidence 123567777761 11 00000 0000 00136788999999
Q ss_pred HHHHhcccCccccCCChhhHHHHHHHHHHHHHHhcCCchhhHHHhhhCCC---hhhHHHHHHHHHHHHhhcChhhHHHhh
Q 004445 339 IVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKS---ESEMLDGCRALLSIATVTTPFVFDRLL 415 (753)
Q Consensus 339 L~qLaSl~~~~f~~~~~~~r~~~l~~~l~~~~~il~~~~~~~~~~~~gl~---~~~~~e~cr~l~rL~~~~~~~~l~~~~ 415 (753)
|+++.+...+ . ++.+++..++.++..+.... ..+... -+ ++.+..+||++.++...+. ..+.+-+
T Consensus 268 l~~i~~~~~~-----~--~~~~~~~~l~~~~~~~~~~~---~~~~~~-~d~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~ 335 (971)
T 2x1g_F 268 MVNIIIQPDC-----H--NYPKTAFVLIKMFLDSLSEI---TKTEWK-RENDNEDIIVHIYMLFVSSVERHS-TLLLSGI 335 (971)
T ss_dssp HHHHHHCSGG-----G--GCHHHHHHHHHHHHHHHHHH---HHHHSS-SSCSCSHHHHHHHHHHHHHHHHTH-HHHHHHH
T ss_pred HHHHHcCccc-----c--ccHHHHHHHHHHHHHhHHHH---HHHHhc-ccccchHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 9999886421 1 35667888887776654211 011111 12 2667789999999987763 1121000
Q ss_pred -hccCchhhHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHhhccccccCCCCCCCh---HHhhhHHHHHHHH
Q 004445 416 -KSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPL---EVRNAAASLFALI 491 (753)
Q Consensus 416 -~~~~~~~~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~s~~~~~~~~~~p~---~l~~~~~~I~~~Y 491 (753)
+.. ......+..+...++......+... ...+.....+.+|..+++.......+...+. ....+..++....
T Consensus 336 ~~~~--~~~~~~l~~~l~~ll~~~~~~~~~~--~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 411 (971)
T 2x1g_F 336 TSAD--PELSILVHRIVQEILHCTDKPGIYP--VEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRIL 411 (971)
T ss_dssp HTCC--HHHHHHHHHHHHHHHHHHHCSSCTT--TTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHH
T ss_pred ccCc--ccccHHHHHHHHHHHHHHcCCCCCC--cchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHH
Confidence 000 0001122222222222111111100 0124567888999998763211100000111 1233445555554
Q ss_pred HHhhcccccccccCCCCccchhhhcH-HHHHHHHHHHHHHHHHcHhhhHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHH
Q 004445 492 VESELKVASASAMDDNGEFNYLQASI-SAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELY 570 (753)
Q Consensus 492 i~srL~~~~~~~~~d~d~de~~~~d~-~~~~eqL~~ia~l~R~~~~~t~~lL~~ll~~~~~~l~~~~~~~~~~~~~E~Lh 570 (753)
++ ++..+.....+ ++|+++++|- .....--+.+-.+++..++..++.+.+.+.+.++.+... +..+ .+..
T Consensus 412 ~~-~~~~p~~~~~~--~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-----~~~w-~~~e 482 (971)
T 2x1g_F 412 VR-KSEQPDEKSLA--KWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRH-----PTHW-TKLE 482 (971)
T ss_dssp HH-HTSCCCTTTTS--CSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHC-----TTCC-HHHH
T ss_pred HH-HhcCCCccccc--ccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCC-----CCcH-HHHH
Confidence 43 44443321111 1111111221 122234445556667777788888888888887776422 1122 3445
Q ss_pred HHHHHHHhHh
Q 004445 571 SLLLITGHVL 580 (753)
Q Consensus 571 WLvli~G~~L 580 (753)
=.++..|++.
T Consensus 483 aal~~l~~ia 492 (971)
T 2x1g_F 483 ACIYSFQSVA 492 (971)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 5666677754
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.36 E-value=4.4e-11 Score=144.87 Aligned_cols=151 Identities=12% Similarity=0.122 Sum_probs=133.2
Q ss_pred CChhhHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCChHHHHHHHhc--cCCchhHHHHHHHHHHHHHhhcccc
Q 004445 23 ADLAKLQSIMHSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILE--NSQVANARFQAAAAIRDAAMREWSF 98 (753)
Q Consensus 23 md~~~l~~~~~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~s~~~~~~c~~ILe--~S~~~y~~f~A~~~L~~~i~~~W~~ 98 (753)
+|.+.+ ++|.++.+..++|.+ |++||+.|.+++++|+.+..+..|+. .+.++.++++|+..|++.+.++|..
T Consensus 7 ~~~~~~----~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~ 82 (852)
T 4fdd_A 7 PDEQGL----QQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQN 82 (852)
T ss_dssp CCHHHH----HHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGG
T ss_pred CChhhH----HHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCC
Confidence 455667 889999999888853 99999999999999999999999998 5788899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHH
Q 004445 99 LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLE 178 (753)
Q Consensus 99 l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~ 178 (753)
+++++|..||+.+++.+. +.++.|++++..+++.|.|.+|++ .|+++++.+.+.+.+ +++..+..++..|.
T Consensus 83 ~~~~~~~~ik~~ll~~l~----~~~~~vr~~~a~~i~~ia~~~~~~----~wp~ll~~L~~~l~~-~~~~~r~~al~~L~ 153 (852)
T 4fdd_A 83 FPNGVTDFIKSECLNNIG----DSSPLIRATVGILITTIASKGELQ----NWPDLLPKLCSLLDS-EDYNTCEGAFGALQ 153 (852)
T ss_dssp CCHHHHHHHHHHHHTTTT----CSSHHHHHHHHHHHHHHHHHTTTT----TCTTHHHHHHHHHSC-SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHhcCcc----ccHHHHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 999999999999999753 356799999999999999998654 588899999999985 56777889999999
Q ss_pred HHHhhhCC
Q 004445 179 SLVSEFSP 186 (753)
Q Consensus 179 ~lv~Efs~ 186 (753)
.++.++..
T Consensus 154 ~i~~~~~~ 161 (852)
T 4fdd_A 154 KICEDSAE 161 (852)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhHH
Confidence 99988854
No 9
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.34 E-value=9.6e-09 Score=126.17 Aligned_cols=143 Identities=10% Similarity=0.126 Sum_probs=124.6
Q ss_pred HHHHHHHHHhhCCCC-HHHHHHHHHhhhcCCChHHHHHHHhccC-CchhHHHHHHHHHHHHHhhccc------cCCHHHH
Q 004445 33 HSIEIACSSIQMHVN-PAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWS------FLTADEK 104 (753)
Q Consensus 33 ~~lE~~~~~ly~~~~-r~~Ae~~L~~f~~s~~~~~~c~~ILe~S-~~~y~~f~A~~~L~~~i~~~W~------~l~~~~r 104 (753)
++|.++....++|.+ .+ ||+.|.+++++|+.|..+..|+.+. ..+.++++|+..|++.|.++|. .+++++|
T Consensus 5 ~~l~~~L~~~~spd~~~r-Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k 83 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT-SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNV 83 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH-HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHH-HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHH
Confidence 677788877777743 34 9999999999999999998988554 5679999999999999999998 8999999
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHHHHhhh
Q 004445 105 KSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEF 184 (753)
Q Consensus 105 ~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~Ef 184 (753)
..||+.+++.+.+. ++.|+++++.+++.|.+..|++ .|+++++++.+.+.+ +++.+..-++.+|..++.++
T Consensus 84 ~~ik~~ll~~l~~~----~~~ir~~l~~~ia~ia~~d~p~----~Wp~ll~~L~~~l~s-~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 84 ELIKKEIVPLMISL----PNNLQVQIGEAISSIADSDFPD----RWPTLLSDLASRLSN-DDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp HHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHTTCCS-SCTTHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHhhCcc----chhHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999863 3899999999999999999985 599999999999975 56777888999999988776
Q ss_pred C
Q 004445 185 S 185 (753)
Q Consensus 185 s 185 (753)
.
T Consensus 155 ~ 155 (960)
T 1wa5_C 155 R 155 (960)
T ss_dssp T
T ss_pred H
Confidence 4
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.04 E-value=7.7e-07 Score=106.92 Aligned_cols=189 Identities=12% Similarity=0.090 Sum_probs=145.9
Q ss_pred HHHHHHHHh-hCCCC--HHHHHHHHHhhhcC--CChHHHHHHHhccC-CchhHHHHHHHHHHHHHhhc-----------c
Q 004445 34 SIEIACSSI-QMHVN--PAAAEATILGLCQS--PQPYKACQFILENS-QVANARFQAAAAIRDAAMRE-----------W 96 (753)
Q Consensus 34 ~lE~~~~~l-y~~~~--r~~Ae~~L~~f~~s--~~~~~~c~~ILe~S-~~~y~~f~A~~~L~~~i~~~-----------W 96 (753)
+|.++.... ++|.+ |++||+.|.+++++ |+.|..+..||.++ .++.++++|+..|++.+.++ |
T Consensus 5 ~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~ 84 (861)
T 2bpt_A 5 EFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRW 84 (861)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhH
Confidence 456777777 77743 89999999999986 88999999999876 57899999999999998665 5
Q ss_pred cc-CCHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHH
Q 004445 97 SF-LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGIN 175 (753)
Q Consensus 97 ~~-l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~ 175 (753)
.. +++++|..||+.+++.+.+ .++.|+++++++++.|.+..|+. ..|+.+++.+.+.+.+..++..+..++.
T Consensus 85 ~~~l~~~~~~~ik~~ll~~l~~----~~~~vr~~~~~~l~~i~~~~~p~---~~w~~ll~~L~~~l~~~~~~~~r~~al~ 157 (861)
T 2bpt_A 85 ITQVSPEAKNQIKTNALTALVS----IEPRIANAAAQLIAAIADIELPH---GAWPELMKIMVDNTGAEQPENVKRASLL 157 (861)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHHGGG---TCCHHHHHHHHHHTSTTSCHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHCC----CchHHHHHHHHHHHHHHHhhCcc---cccHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 75 9999999999999998743 45788999999999999999985 2589999999999985226777889999
Q ss_pred HHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHhccc
Q 004445 176 FLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNW 255 (753)
Q Consensus 176 iL~~lv~Efs~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw 255 (753)
++..+..++.... + .+ ...+..|+......+.. ...+..+...+++++..++.|
T Consensus 158 ~l~~l~~~~~~~~------------~---~~-~~~~~~ll~~l~~~l~~----------~~~~~~vr~~al~~l~~~~~~ 211 (861)
T 2bpt_A 158 ALGYMCESADPQS------------Q---AL-VSSSNNILIAIVQGAQS----------TETSKAVRLAALNALADSLIF 211 (861)
T ss_dssp HHHHHHHTSSTTS------------S---TT-GGGHHHHHHHHHHHHST----------TCCCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHcCChhh------------h---HH-HHHHHHHHHHHHHhhcC----------CCCCHHHHHHHHHHHHHHHHH
Confidence 9999999876321 0 12 23455566555444421 001345778888888888765
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.77 E-value=4.6e-08 Score=108.55 Aligned_cols=186 Identities=12% Similarity=0.066 Sum_probs=142.4
Q ss_pred HHHHHHHHhhCCCC--HHHHHHHHHhhhc--CCChHHHHHHHhccCC-chhHHHHHHHHHHHHHhhc-----------cc
Q 004445 34 SIEIACSSIQMHVN--PAAAEATILGLCQ--SPQPYKACQFILENSQ-VANARFQAAAAIRDAAMRE-----------WS 97 (753)
Q Consensus 34 ~lE~~~~~ly~~~~--r~~Ae~~L~~f~~--s~~~~~~c~~ILe~S~-~~y~~f~A~~~L~~~i~~~-----------W~ 97 (753)
+|.++...+++|.+ |++||+.|.++++ .|+.+..+..||.+++ .+.++.+|+..|++.+.++ |.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 36677778888753 8999999999997 5888888888998764 7899999999999999776 68
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccC-CchhHHHHHHH
Q 004445 98 FLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIH-GVDTQFIGINF 176 (753)
Q Consensus 98 ~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~-s~~~~~~gl~i 176 (753)
.++.++|..||+.+++.+.. .++.| ++++.+++.|.+..|++ ..|+.+++.+.+.+.+.. ++..+..++.+
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~----~~~~v-~~~~~~i~~ia~~~~~~---~~w~~ll~~L~~~l~~~~~~~~~r~~al~~ 153 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGT----ETYRP-SSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTLEA 153 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTC----CCSSS-CSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCC----CCchh-hHHHHHHHHHHHHhccc---cccHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 89999999999999998654 23456 88999999999999885 258889999999997522 67788899999
Q ss_pred HHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHhccc
Q 004445 177 LESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNW 255 (753)
Q Consensus 177 L~~lv~Efs~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw 255 (753)
|..++.++.+. .+ ...+..++......|..- .+...+...+++++.+++.+
T Consensus 154 l~~l~~~~~~~-----------------~~-~~~~~~ll~~l~~~l~~~----------~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 154 IGYICQDIDPE-----------------QL-QDKSNEILTAIIQGMRKE----------EPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp HHHHHHHSCGG-----------------GT-GGGHHHHHHHHHHHHSTT----------CCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCch-----------------hh-HhHHHHHHHHHHHHhCCC----------CCCHHHHHHHHHHHHHHHHH
Confidence 99999887421 02 233555666555554310 00245667788888887643
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.28 E-value=2.3e-05 Score=94.23 Aligned_cols=185 Identities=13% Similarity=0.099 Sum_probs=138.3
Q ss_pred HHHHHHHhhCCCC--HHHHHHHHHhhhcC--CChHHHHHHHhccC-CchhHHHHHHHHHHHHHh-----------hcccc
Q 004445 35 IEIACSSIQMHVN--PAAAEATILGLCQS--PQPYKACQFILENS-QVANARFQAAAAIRDAAM-----------REWSF 98 (753)
Q Consensus 35 lE~~~~~ly~~~~--r~~Ae~~L~~f~~s--~~~~~~c~~ILe~S-~~~y~~f~A~~~L~~~i~-----------~~W~~ 98 (753)
|.++.+.+++|.+ |++|++.|.+++++ |+.+..+..+|.+. ..+.++.+|+.+|++.+. ++|..
T Consensus 3 l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 5666777777743 89999999999987 88888888888765 578999999999999874 67999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccC-CchhHHHHHHHH
Q 004445 99 LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIH-GVDTQFIGINFL 177 (753)
Q Consensus 99 l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~-s~~~~~~gl~iL 177 (753)
++++.|..||+.+++.+.+. ++.+ ++++++++.|.+..++. .+|+.+++.+.+.+.+.. ++..+..++..|
T Consensus 83 l~~~~~~~ik~~ll~~l~~~----~~~~-~~~~~~l~~i~~~~~~~---~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l 154 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTE----TYRP-SSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTLEAI 154 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTC----CSSS-CHHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCC----cHHH-HHHHHHHHHHHHhhCcc---cccHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999987432 3445 89999999999998874 358889999999997522 667788999999
Q ss_pred HHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHhccc
Q 004445 178 ESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNW 255 (753)
Q Consensus 178 ~~lv~Efs~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw 255 (753)
..++.++.+ . .|. ..+..++......+.. + .+...+...+++++..++.+
T Consensus 155 ~~l~~~~~~-------------~----~~~-~~~~~ll~~l~~~l~~--------~--~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 155 GYICQDIDP-------------E----QLQ-DKSNEILTAIIQGMRK--------E--EPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp HHHHHHSCH-------------H----HHG-GGHHHHHHHHHHHHST--------T--CSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhcCH-------------h----hHH-hHHHHHHHHHHHhhcC--------C--CCCHHHHHHHHHHHHHHHHH
Confidence 999987641 0 132 3466666654444421 0 01234566788888777654
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=85.80 E-value=7.8 Score=48.14 Aligned_cols=145 Identities=9% Similarity=0.027 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHhhhcCC------C----hHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCC
Q 004445 33 HSIEIACSSIQMHVN--PAAAEATILGLCQSP------Q----PYKACQFILENSQVANARFQAAAAIRDAAMREWSFLT 100 (753)
Q Consensus 33 ~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~s~------~----~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~ 100 (753)
.+|.++.+.+.+|.+ |.+|.+-|.+.-+.+ . -.......|. ++++.++..|+.+|...+.. ++
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~----~~ 80 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSK----VK 80 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTT----SC
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh----CC
Confidence 457788888877743 888988777654433 1 1223444454 67899999999999888764 67
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCC-----CCCchhHHHHHHHHHHcccCCchhHHHHHH
Q 004445 101 ADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDF-----TSSDKEAFFSQVHQAVLGIHGVDTQFIGIN 175 (753)
Q Consensus 101 ~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~-----~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~ 175 (753)
.+.+..+...|+.-+. +....|+...+.++..|.+.-..+. ....|+.+++.+.+.+....++..+.-++.
T Consensus 81 ~~~~~~i~~~Ll~~l~----d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~ 156 (1230)
T 1u6g_C 81 EYQVETIVDTLCTNML----SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALD 156 (1230)
T ss_dssp HHHHHHHHHHHHHHTT----CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 7666666666666542 4456789999999999988655431 112366788888888863245677788889
Q ss_pred HHHHHHhhhCC
Q 004445 176 FLESLVSEFSP 186 (753)
Q Consensus 176 iL~~lv~Efs~ 186 (753)
+|..++..+..
T Consensus 157 ~l~~~~~~~~~ 167 (1230)
T 1u6g_C 157 IMADMLSRQGG 167 (1230)
T ss_dssp HHHHHHHHTCS
T ss_pred HHHHHHHHhHh
Confidence 99988876543
No 14
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=80.78 E-value=18 Score=35.05 Aligned_cols=223 Identities=13% Similarity=0.100 Sum_probs=125.9
Q ss_pred HHHHHHHhhCCCC--HHHHHHHHHhhhcCC----------ChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCHH
Q 004445 35 IEIACSSIQMHVN--PAAAEATILGLCQSP----------QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTAD 102 (753)
Q Consensus 35 lE~~~~~ly~~~~--r~~Ae~~L~~f~~s~----------~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~ 102 (753)
++.+++.+..+.. |..|-..|..+.... ..++....+|.. .++.++..|+.+|.+.... .++
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~-----~~~ 77 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASG-----PDE 77 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTS-----CHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcC-----ChH
Confidence 4555665655422 566666776665443 345566666765 4589999999999887654 244
Q ss_pred HHHHHHH-HHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchh-----HHHHHHHHHHcccCCchhHHHHHHH
Q 004445 103 EKKSLIG-FCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKE-----AFFSQVHQAVLGIHGVDTQFIGINF 176 (753)
Q Consensus 103 ~r~~lr~-~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~-----~~i~ei~~~l~~~~s~~~~~~gl~i 176 (753)
.+..+.+ -.+..+...-.+...-|+...+.++..+... .+..+. ..++.+.+++.. .++..+.-++..
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~ 151 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-----PDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARA 151 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-----CHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-----CHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHH
Confidence 4443322 2333343333244577888888888887641 111111 356677778774 456777778888
Q ss_pred HHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHhcccc
Q 004445 177 LESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWD 256 (753)
Q Consensus 177 L~~lv~Efs~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lswd 256 (753)
|..+.... . . ..+...+...++.+. .+|+ . .+..+...++.++.++...+
T Consensus 152 L~~l~~~~----~--------~--~~~~~~~~~~i~~L~----~ll~--------~----~~~~v~~~a~~~L~~l~~~~ 201 (252)
T 4hxt_A 152 LANIASGP----D--------E--AIKAIVDAGGVEVLV----KLLT--------S----TDSEVQKEAARALANIASGP 201 (252)
T ss_dssp HHHHTTSC----H--------H--HHHHHHHTTHHHHHH----HHTT--------C----SCHHHHHHHHHHHHHHTTSB
T ss_pred HHHHHcCC----H--------H--HHHHHHHCcCHHHHH----HHHC--------C----CCHHHHHHHHHHHHHHHcCC
Confidence 87775321 0 0 112222222232222 2221 0 13466777777777765311
Q ss_pred cccCCCCccchhhhcccccccccCCCCCCccccccCCcchhHhhcccchHHHHHHHHHHHHhhcccCCCCCCcccHHHHH
Q 004445 257 FQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSAR 336 (753)
Q Consensus 257 F~~~~~d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al 336 (753)
.. =+..+.+.+.++.+.++... .++.+...++
T Consensus 202 ~~-------------------------------------~~~~l~~~~~i~~L~~ll~~-----------~~~~v~~~a~ 233 (252)
T 4hxt_A 202 TS-------------------------------------AIKAIVDAGGVEVLQKLLTS-----------TDSEVQKEAQ 233 (252)
T ss_dssp HH-------------------------------------HHHHHHHTTHHHHHHHGGGC-----------SCHHHHHHHH
T ss_pred HH-------------------------------------HHHHHHHCCCHHHHHHHHCC-----------CcHHHHHHHH
Confidence 11 12245666777777655432 2467888899
Q ss_pred HHHHHHhcccC
Q 004445 337 KLIVQLCSLTG 347 (753)
Q Consensus 337 ~cL~qLaSl~~ 347 (753)
.+|..|+.-..
T Consensus 234 ~~L~~l~~~~~ 244 (252)
T 4hxt_A 234 RALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHTCB
T ss_pred HHHHHHHcCCC
Confidence 99999987554
No 15
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=64.29 E-value=45 Score=32.27 Aligned_cols=134 Identities=11% Similarity=0.060 Sum_probs=78.0
Q ss_pred HHHHHHHhhCCCC--HHHHHHHHHh-hhc---------CCChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCHH
Q 004445 35 IEIACSSIQMHVN--PAAAEATILG-LCQ---------SPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTAD 102 (753)
Q Consensus 35 lE~~~~~ly~~~~--r~~Ae~~L~~-f~~---------s~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~ 102 (753)
++.+.+.++.+.. +..|-..|.. +.. ....++....+|..+ ++.++..|+.+|...... .++
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~-----~~~ 87 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASG-----GNE 87 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTS-----CHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcC-----CHH
Confidence 3444555565532 5555555532 211 124455566667654 489999999999988654 244
Q ss_pred HHHHHHH-HHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCch------hHHHHHHHHHHcccCCchhHHHHHH
Q 004445 103 EKKSLIG-FCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDK------EAFFSQVHQAVLGIHGVDTQFIGIN 175 (753)
Q Consensus 103 ~r~~lr~-~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~------~~~i~ei~~~l~~~~s~~~~~~gl~ 175 (753)
.+..+.+ -.+..+...-.+....|+...+.++..|... +..+ ...++.+.+++.. +++..+.-++.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~------~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~ 160 (252)
T 4db8_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG------GNEQIQAVIDAGALPALVQLLSS-PNEQILQEALW 160 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS------CHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC------CchHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHH
Confidence 4444433 2344444443234567888888888777421 1111 1356677788874 46667777888
Q ss_pred HHHHHH
Q 004445 176 FLESLV 181 (753)
Q Consensus 176 iL~~lv 181 (753)
.|..+.
T Consensus 161 ~L~~l~ 166 (252)
T 4db8_A 161 ALSNIA 166 (252)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 887776
No 16
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=60.78 E-value=72 Score=33.86 Aligned_cols=108 Identities=12% Similarity=0.052 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHH-HHH----HHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHHH
Q 004445 32 MHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYK-ACQ----FILENSQVANARFQAAAAIRDAAMREWSFLTADEKKS 106 (753)
Q Consensus 32 ~~~lE~~~~~ly~~~~r~~Ae~~L~~f~~s~~~~~-~c~----~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~ 106 (753)
..++..+.+.++...+.++|.+-+.++.. |.... .+. ..||+++ .-.+=..+..|..+... ..++.+|-..
T Consensus 217 kkki~~lL~EY~~s~D~~EA~~ci~EL~~-p~fhhe~V~~av~~aLE~~~-~~~re~~~~LL~~L~~~--glls~~q~~~ 292 (358)
T 3eiq_C 217 VKEIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLESTG-ESAFKMILDLLKSLWKS--STITIDQMKR 292 (358)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCC-TTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHT--TCSCHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHccC-CcchHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHC--CCCCHHHHHH
Confidence 37889999999888789999999999985 44332 233 3456553 33444455677777766 5788887543
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccC
Q 004445 107 LIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLD 144 (753)
Q Consensus 107 lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d 144 (753)
=-.-+++.+--..-+ -+.+...+.+.+++.++.||+.
T Consensus 293 Gf~~vl~~ldDl~lD-iP~A~~~la~~varai~~g~l~ 329 (358)
T 3eiq_C 293 GYERIYNEIPDINLD-VPHSYSVLERFVEECFQAGIIS 329 (358)
T ss_dssp HHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHhccHhhcc-cccHHHHHHHHHHHHHHCCCCC
Confidence 333333333222211 2566777888999999999986
No 17
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=60.63 E-value=1.4e+02 Score=29.74 Aligned_cols=107 Identities=14% Similarity=-0.011 Sum_probs=69.3
Q ss_pred cCCchhHHHHHHHHHHHHHhhcccc-CCHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHhcccCCCCCchh
Q 004445 74 NSQVANARFQAAAAIRDAAMREWSF-LTADEKKSLIGFCLCFVMQHA-SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKE 151 (753)
Q Consensus 74 ~S~~~y~~f~A~~~L~~~i~~~W~~-l~~~~r~~lr~~ll~yl~~~~-~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~ 151 (753)
..+|..|+--|+.+|...+..--.. ............++..++.++ .+--+-++.+...++..++...... .
T Consensus 65 ~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~------~ 138 (278)
T 4ffb_C 65 TDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI------T 138 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS------H
T ss_pred ccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH------H
Confidence 4678889999999998877652110 011112234455666777763 2444666777666666666544322 2
Q ss_pred HHHHHHHHHHcccCCchhHHHHHHHHHHHHhhhCCC
Q 004445 152 AFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPS 187 (753)
Q Consensus 152 ~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~Efs~~ 187 (753)
.+++.+...+.. .+|....-.+.+|..++.+|+..
T Consensus 139 ~~~e~l~~~l~~-Knpkv~~~~l~~l~~~l~~fg~~ 173 (278)
T 4ffb_C 139 QSVELVIPFFEK-KLPKLIAAAANCVYELMAAFGLT 173 (278)
T ss_dssp HHHHHHGGGGGC-SCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHhCCC
Confidence 366777777764 67888888999999999999764
No 18
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=59.04 E-value=1.1e+02 Score=28.31 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHHhc---cCCchhHHHHHHHHHHHHHhhccccCCHHHHHHH--
Q 004445 33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILE---NSQVANARFQAAAAIRDAAMREWSFLTADEKKSL-- 107 (753)
Q Consensus 33 ~~lE~~~~~ly~~~~r~~Ae~~L~~f~~s~~~~~~c~~ILe---~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~l-- 107 (753)
..+|+|+......+|-...-++--..+..++.-..|-..|. ++.++.++++|+.+|+..+.+.- ..-..++
T Consensus 18 ~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG----~~Fh~evas 93 (163)
T 1x5b_A 18 QDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCG----KIFHLEVCS 93 (163)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTC----HHHHHHHTS
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh----HHHHHHHhh
Confidence 44888888776555644444555555555554444333331 46899999999999999999843 3333233
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCC-chhHHHHHHHHHHcc
Q 004445 108 IGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSS-DKEAFFSQVHQAVLG 163 (753)
Q Consensus 108 r~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~-~~~~~i~ei~~~l~~ 163 (753)
|.|+-+++.--.+...+-|++++..++ ++|-+..+. ..-..+.++-+.++.
T Consensus 94 ~~Fl~el~~l~~~~~~~~Vk~kil~li-----~~W~~~f~~~~~l~~i~~~Y~~Lk~ 145 (163)
T 1x5b_A 94 RDFATEVRAVIKNKAHPKVCEKLKSLM-----VEWSEEFQKDPQFSLISATIKSMKE 145 (163)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH-----HHHHHHTTTCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHH-----HHHHHHhcCCcccHHHHHHHHHHHH
Confidence 445433211111234567888876644 345432111 112356666666653
No 19
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=59.00 E-value=70 Score=33.14 Aligned_cols=123 Identities=13% Similarity=0.086 Sum_probs=78.5
Q ss_pred CCCCCCCCCCCCChhhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHH-HH----HHHhccCCchhHHHHHHH
Q 004445 12 GGDDGGGGGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYK-AC----QFILENSQVANARFQAAA 86 (753)
Q Consensus 12 ~~~~~~~~~~~md~~~l~~~~~~lE~~~~~ly~~~~r~~Ae~~L~~f~~s~~~~~-~c----~~ILe~S~~~y~~f~A~~ 86 (753)
+-|++|+ +-|..+++ ..++..+.+.++...+-++|.+-+.++.. |.... .+ -..||++ ++-.+=..+.
T Consensus 151 ~~WG~~~--~~~~~eel---kkki~~lL~EY~~~~D~~EA~~ci~EL~~-p~f~~e~V~~ai~~alE~~-~~~~re~~~~ 223 (307)
T 2zu6_B 151 SVWGSGG--GQQSVNHL---VKEIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIIMVLEST-GESTFKMILD 223 (307)
T ss_dssp CSSCCCS--TTSCHHHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHCC-GGGHHHHHHHHHHHHHTCC-SSHHHHHHHH
T ss_pred hhcCCCC--CCCCHHHH---HHHHHHHHHHHHcCCCHHHHHHHHHHcCC-CcchHHHHHHHHHHHHccC-ChHHHHHHHH
Confidence 4455433 34665555 38899999999988789999999999985 43332 23 3445655 3344555667
Q ss_pred HHHHHHhhccccCCHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccC
Q 004445 87 AIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLD 144 (753)
Q Consensus 87 ~L~~~i~~~W~~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d 144 (753)
.|..+..+ ..++.+|-..=-.-+++.+--..-+ -|.+.+.+.+.+++.++.||+.
T Consensus 224 LL~~L~~~--~~ls~~q~~~Gf~~vl~~l~Dl~lD-iP~A~~~la~~v~~ai~~g~l~ 278 (307)
T 2zu6_B 224 LLKSLWKS--STITVDQMKRGYERIYNEIPDINLD-VPHSYSVLERFVEECFQAGIIS 278 (307)
T ss_dssp HHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHC--CCCCHHHHHHHHHHHHHhccHhhcc-cccHHHHHHHHHHHHHHCCCCC
Confidence 77777766 5788887543333333333222101 2566777888899999999987
No 20
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=58.75 E-value=61 Score=30.52 Aligned_cols=63 Identities=8% Similarity=-0.080 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHHhc---cCCchhHHHHHHHHHHHHHhhc
Q 004445 33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILE---NSQVANARFQAAAAIRDAAMRE 95 (753)
Q Consensus 33 ~~lE~~~~~ly~~~~r~~Ae~~L~~f~~s~~~~~~c~~ILe---~S~~~y~~f~A~~~L~~~i~~~ 95 (753)
..+|+|+......+|-...-++--..+..+..-..|-..|. ++.|+.++++|+++|+..+.+.
T Consensus 16 ~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNC 81 (171)
T 1juq_A 16 SWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNC 81 (171)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc
Confidence 44888887776555644455555555555554444333331 3689999999999999999884
No 21
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=58.41 E-value=2.7e+02 Score=32.46 Aligned_cols=131 Identities=9% Similarity=-0.002 Sum_probs=76.8
Q ss_pred HHHHHHHHHhhhcC------CChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHhcCCC
Q 004445 48 PAAAEATILGLCQS------PQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASS 121 (753)
Q Consensus 48 r~~Ae~~L~~f~~s------~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ll~yl~~~~~~ 121 (753)
|+.|.+.|..+... |.-.+.+...|. +.++.++.-|+.+|....... .+.-......++.++...-.+
T Consensus 338 r~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~-~~~~~~R~aa~~alg~i~~~~-----~~~~~~~l~~~l~~l~~~l~d 411 (852)
T 4fdd_A 338 RKCSAAALDVLANVYRDELLPHILPLLKELLF-HHEWVVKESGILVLGAIAEGC-----MQGMIPYLPELIPHLIQCLSD 411 (852)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHTTTTT-----HHHHGGGHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcc-----hHHHHHHHHHHHHHHHHHcCC
Confidence 55565555554432 112233444443 567899999998888765431 111112233445555555456
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHHHHhhhC
Q 004445 122 PEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS 185 (753)
Q Consensus 122 l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~Efs 185 (753)
..+.|+...+.++.++.+..=.......-..++..+.+.+.. .++..+.-++..|..++....
T Consensus 412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhh
Confidence 778999999999988875321111122333466677776653 456777788888888876554
No 22
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=57.43 E-value=1.2e+02 Score=27.88 Aligned_cols=99 Identities=13% Similarity=0.017 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHHh---ccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHH--
Q 004445 33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFIL---ENSQVANARFQAAAAIRDAAMREWSFLTADEKKSL-- 107 (753)
Q Consensus 33 ~~lE~~~~~ly~~~~r~~Ae~~L~~f~~s~~~~~~c~~IL---e~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~l-- 107 (753)
..+|+|+...+..+|-...-++--..+..+..-..+-..| =++.||.++++|+++|+..+.+.- ..-..++
T Consensus 14 ~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG----~~fh~eias 89 (149)
T 3g2s_A 14 ARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCG----KRFHDEVGK 89 (149)
T ss_dssp HHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCC----HHHHHHHTS
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC----HHHHHHHhh
Confidence 4488888777766665556666666666665444432222 137899999999999999998853 3322222
Q ss_pred HHHHHHHHHhcC-----CCCchHHHHHHHHHHH
Q 004445 108 IGFCLCFVMQHA-----SSPEGYVQAKISSVAA 135 (753)
Q Consensus 108 r~~ll~yl~~~~-----~~l~~~V~~~l~~~la 135 (753)
+.|+-+++.-.. ...+.-|+.++..++-
T Consensus 90 ~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 122 (149)
T 3g2s_A 90 FRFLNELIKVVSPKYLGSRTSEKVKNKILELLY 122 (149)
T ss_dssp HHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccCCCCCHHHHHHHHHHHH
Confidence 455544332211 1356778888766553
No 23
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=53.59 E-value=56 Score=30.27 Aligned_cols=97 Identities=10% Similarity=0.003 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHHh----ccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHH-
Q 004445 33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFIL----ENSQVANARFQAAAAIRDAAMREWSFLTADEKKSL- 107 (753)
Q Consensus 33 ~~lE~~~~~ly~~~~r~~Ae~~L~~f~~s~~~~~~c~~IL----e~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~l- 107 (753)
..+|+|+...+..+|-...-++--..+..++.-..|-..| .++.|+.++++|+++|+..+.+.- ..-..++
T Consensus 19 ~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG----~~fh~eva 94 (157)
T 1elk_A 19 QRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCG----HRFHVLVA 94 (157)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSC----HHHHHHHT
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC----HHHHHHHh
Confidence 4578888777655564444444444455555544443333 346889999999999999999853 3333333
Q ss_pred -HHHHHHHHHh----cCCCCchHHHHHHHHHH
Q 004445 108 -IGFCLCFVMQ----HASSPEGYVQAKISSVA 134 (753)
Q Consensus 108 -r~~ll~yl~~----~~~~l~~~V~~~l~~~l 134 (753)
+.|+-+++.. +. +.+.-|++++..++
T Consensus 95 ~~~fl~e~Lvk~~~~k~-~~~~~Vk~kil~li 125 (157)
T 1elk_A 95 SQDFVESVLVRTILPKN-NPPTIVHDKVLNLI 125 (157)
T ss_dssp SHHHHHHHTHHHHSTTT-CCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccCC-CCcHHHHHHHHHHH
Confidence 4455542222 22 34457877765544
No 24
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=51.98 E-value=3.3e+02 Score=31.45 Aligned_cols=95 Identities=7% Similarity=0.020 Sum_probs=54.3
Q ss_pred CCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH-----------Hhccc
Q 004445 75 SQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLM-----------KRGWL 143 (753)
Q Consensus 75 S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~-----------K~gW~ 143 (753)
|.++.++=.|...|++.- .++..+...+|++.+... +.+..||.....++-..+ +..|.
T Consensus 12 s~d~~~r~~A~~~L~~~~--------~~~~~~~~~~L~~~l~~~--~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 12 SPDRLELEAAQKFLERAA--------VENLPTFLVELSRVLANP--GNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp CSCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH--------hcChhhHHHHHHHHHhCC--CCCHHHHHHHHHHHHHhccccchHhHHHHHhhhc
Confidence 345567777887776632 234678888888887653 245667766666665554 45576
Q ss_pred CCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHHHH
Q 004445 144 DFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLV 181 (753)
Q Consensus 144 d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv 181 (753)
.-.+..+..+-..+.+.+.. .++.. ..++.++..+.
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~-~~~~~-~~~~~~l~~i~ 117 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGT-ETYRP-SSASQCVAGIA 117 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTT-CCSSS-CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCC-CcHHH-HHHHHHHHHHH
Confidence 54444455455556665543 22333 44444555444
No 25
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=49.23 E-value=1.5e+02 Score=26.70 Aligned_cols=96 Identities=14% Similarity=0.004 Sum_probs=54.6
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHH----hccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHH--
Q 004445 34 SIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFI----LENSQVANARFQAAAAIRDAAMREWSFLTADEKKSL-- 107 (753)
Q Consensus 34 ~lE~~~~~ly~~~~r~~Ae~~L~~f~~s~~~~~~c~~I----Le~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~l-- 107 (753)
.+|+|+...+..+|-...-++--..+..+..-..|-.. | ++++|.++++|+++|+..+.+. +..-..++
T Consensus 9 ~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl-~~~n~~~ql~AL~LLe~~vkNc----G~~f~~evas 83 (140)
T 3ldz_A 9 DVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRV-NHKDPHVAMQALTLLGACVSNC----GKIFHLEVCS 83 (140)
T ss_dssp HHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHSS
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhc----CHHHHHHHhh
Confidence 36666666655555444445555555555444443333 3 3578999999999999998884 33333333
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 004445 108 IGFCLCFVMQHASSPEGYVQAKISSVAA 135 (753)
Q Consensus 108 r~~ll~yl~~~~~~l~~~V~~~l~~~la 135 (753)
|.|+-..+. .-+..++-|++++..++-
T Consensus 84 ~~Fl~el~~-l~~~~~~~Vk~kil~li~ 110 (140)
T 3ldz_A 84 RDFASEVSN-VLNKGHPKVCEKLKALMV 110 (140)
T ss_dssp HHHHHHHHH-HHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhccCCHHHHHHHHHHHH
Confidence 444433211 111235678777766543
No 26
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=44.62 E-value=15 Score=31.67 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=43.2
Q ss_pred CCCCCCCCCCCCCC--C-hhhHHHHHHHHHHHHHHhhCCCCHHHHHHH-------HHhhhcCC-ChHHHHHHHhccCCch
Q 004445 10 GGGGDDGGGGGGPA--D-LAKLQSIMHSIEIACSSIQMHVNPAAAEAT-------ILGLCQSP-QPYKACQFILENSQVA 78 (753)
Q Consensus 10 ~~~~~~~~~~~~~m--d-~~~l~~~~~~lE~~~~~ly~~~~r~~Ae~~-------L~~f~~s~-~~~~~c~~ILe~S~~~ 78 (753)
|+||..++|+.++. | -.++. .++-.-.+.-+.+ .+--|+.+ |-.+-..| .||...+ .....
T Consensus 1 ~~~~~~~~~~~~~~~~~iTk~I~---~~Ik~~Lk~~~is-Q~~FA~~VL~rsQgtLs~lLr~P~kPW~~L~----~Gre~ 72 (101)
T 1wiz_A 1 GSSGSSGKPEPTNSSVEVSPDIY---QQVRDELKRASVS-QAVFARVAFNRTQGLLSEILRKEEDPRTASQ----SLLVN 72 (101)
T ss_dssp CCCCCCCCCCCCCCSCCCCTTHH---HHHHHHHHHHTCC-HHHHHHHHHSCCHHHHHHHHHTCCCTTTCCH----HHHHH
T ss_pred CCCCCCCCCCcccchhHhhHHHH---HHHHHHHHHcCCC-HHHHHHHHHHHhhhHHHHHHcCCCCCHHHHH----HHHHH
Confidence 66777777775544 2 12231 2333333332232 23445544 44445667 4766542 22445
Q ss_pred hHHHHHHHHHHHHHhhccccCCHHHHHHHHH
Q 004445 79 NARFQAAAAIRDAAMREWSFLTADEKKSLIG 109 (753)
Q Consensus 79 y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~ 109 (753)
|.+++ .|-.+|.++|.+|.+
T Consensus 73 f~RM~-----------nWL~l~e~eR~eIl~ 92 (101)
T 1wiz_A 73 LRAMQ-----------NFLNLPEVERDRIYQ 92 (101)
T ss_dssp HHHHH-----------HHTTSCHHHHHHHHH
T ss_pred HHHHH-----------HHhcCCHHHHHHHHH
Confidence 55554 799999999988754
No 27
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=43.38 E-value=1.9e+02 Score=26.29 Aligned_cols=97 Identities=10% Similarity=0.062 Sum_probs=53.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHHhc---cCCchhHHHHHHHHHHHHHhhccccCCHHHHHHH--H
Q 004445 34 SIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILE---NSQVANARFQAAAAIRDAAMREWSFLTADEKKSL--I 108 (753)
Q Consensus 34 ~lE~~~~~ly~~~~r~~Ae~~L~~f~~s~~~~~~c~~ILe---~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~l--r 108 (753)
.+|+|+...+..+|-...-++--..+..+..-..|-..|. ++.||.++++|+++|+..+.+. +..-..++ +
T Consensus 5 ~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNC----G~~fh~evas~ 80 (148)
T 1mhq_A 5 WLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHC----GEKFHSEVAKF 80 (148)
T ss_dssp HHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHTSH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc----CHHHHHHHhhH
Confidence 3566665555444433333333333333332222222221 4789999999999999999985 33344444 5
Q ss_pred HHHHHHHHhcC-----CCCchHHHHHHHHHH
Q 004445 109 GFCLCFVMQHA-----SSPEGYVQAKISSVA 134 (753)
Q Consensus 109 ~~ll~yl~~~~-----~~l~~~V~~~l~~~l 134 (753)
.|+-.++.--. +..+.-|+.++..++
T Consensus 81 ~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 111 (148)
T 1mhq_A 81 RFLNELIKVLSPKYLGSWATGKVKGRVIEIL 111 (148)
T ss_dssp HHHHHHHHTTCCSTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCCHHHHHHHHHHH
Confidence 66655432211 224677888876544
No 28
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=41.59 E-value=1.8e+02 Score=31.83 Aligned_cols=100 Identities=14% Similarity=0.134 Sum_probs=65.2
Q ss_pred HHHHHHHhhCCCC--HHHHHHHHHhhh-cCCC----------hHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCH
Q 004445 35 IEIACSSIQMHVN--PAAAEATILGLC-QSPQ----------PYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTA 101 (753)
Q Consensus 35 lE~~~~~ly~~~~--r~~Ae~~L~~f~-~s~~----------~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~ 101 (753)
+|.+++.++++.. +.+|-+.++.+- ..++ .++..-.+|.+++++.+|+.|+.+|.+.... ++
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~-----~~ 133 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG-----TS 133 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTS-----CH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC-----CH
Confidence 6778888887632 455555555432 2222 3566778899999999999999999998754 45
Q ss_pred HHHHHHHH-HHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 004445 102 DEKKSLIG-FCLCFVMQHASSPEGYVQAKISSVAAQLMK 139 (753)
Q Consensus 102 ~~r~~lr~-~ll~yl~~~~~~l~~~V~~~l~~~la~I~K 139 (753)
+++..+.+ -.+..+++.-.+...-|+...+.++..|.+
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 66655543 133333333224557788888888888763
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=41.28 E-value=1.3e+02 Score=31.62 Aligned_cols=139 Identities=11% Similarity=0.031 Sum_probs=85.3
Q ss_pred HHHHHHHhhCCCC--HHHHHHHHHhhh---cCC---------ChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCC
Q 004445 35 IEIACSSIQMHVN--PAAAEATILGLC---QSP---------QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLT 100 (753)
Q Consensus 35 lE~~~~~ly~~~~--r~~Ae~~L~~f~---~s~---------~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~ 100 (753)
++.+++.+..+.. |..|-..|..+- ..| ..++....+|....++.++..|+.+|.+.....
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~----- 96 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGN----- 96 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-----
Confidence 5667777765521 666766666642 222 456666677777768999999999999987631
Q ss_pred HHHHHH-HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchh-----HHHHHHHHHHcccCCchhHHHHH
Q 004445 101 ADEKKS-LIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKE-----AFFSQVHQAVLGIHGVDTQFIGI 174 (753)
Q Consensus 101 ~~~r~~-lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~-----~~i~ei~~~l~~~~s~~~~~~gl 174 (753)
.+.+.. +..-++..+.+.-.+..+-|+...+.++..|...+ +..+. ..++-+.+++....++..+..++
T Consensus 97 ~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~ 171 (450)
T 2jdq_A 97 SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDS-----TMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAV 171 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-----HHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC-----HHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 222222 22233444444333446778888888888886532 11122 24566777776434567777888
Q ss_pred HHHHHHHhh
Q 004445 175 NFLESLVSE 183 (753)
Q Consensus 175 ~iL~~lv~E 183 (753)
..|..+...
T Consensus 172 ~~L~~l~~~ 180 (450)
T 2jdq_A 172 WALSNLCRG 180 (450)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhCC
Confidence 888887753
No 30
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=41.01 E-value=2.2e+02 Score=26.26 Aligned_cols=123 Identities=13% Similarity=0.072 Sum_probs=74.1
Q ss_pred HHHHHHHHHhhhcCC----------ChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHH-HHHHHHH
Q 004445 48 PAAAEATILGLCQSP----------QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIG-FCLCFVM 116 (753)
Q Consensus 48 r~~Ae~~L~~f~~s~----------~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~-~ll~yl~ 116 (753)
|..|-..|..+.... ..++....+|.. .++.++-.|+.+|.+.... .++.+..+.+ -.+..+.
T Consensus 29 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~ 102 (210)
T 4db6_A 29 LQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASG-----GNEQIQAVIDAGALPALV 102 (210)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTS-----CHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcC-----CcHHHHHHHHCCCHHHHH
Confidence 556666666665332 344555566654 4789999999999987643 2444444432 1222333
Q ss_pred hcCCCCchHHHHHHHHHHHHHHHhcccCCCCCc-----hhHHHHHHHHHHcccCCchhHHHHHHHHHHHHh
Q 004445 117 QHASSPEGYVQAKISSVAAQLMKRGWLDFTSSD-----KEAFFSQVHQAVLGIHGVDTQFIGINFLESLVS 182 (753)
Q Consensus 117 ~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~-----~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~ 182 (753)
..-.+....|+...+.++..|.... +.. ....++.+.+++.. +++..+..++..|..+..
T Consensus 103 ~lL~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 103 QLLSSPNEQILQEALWALSNIASGG-----NEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHT
T ss_pred HHHcCCcHHHHHHHHHHHHHHHcCC-----HHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence 2222345778888888888876411 111 12356777888875 466777888888888764
No 31
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.42 E-value=1.6e+02 Score=26.04 Aligned_cols=108 Identities=12% Similarity=0.045 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHH-H----HHHHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHHH
Q 004445 32 MHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYK-A----CQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKS 106 (753)
Q Consensus 32 ~~~lE~~~~~ly~~~~r~~Ae~~L~~f~~s~~~~~-~----c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~ 106 (753)
..++..+.+.++...+-++|.+-+.++.. |.... . .-..||+++ +-.+=..+..|..+... +.++.+|-..
T Consensus 7 ~kki~~ll~EY~~~~D~~Ea~~cl~eL~~-p~f~~e~V~~~i~~alE~~~-~~~~e~~~~LL~~L~~~--~~is~~q~~~ 82 (129)
T 2nsz_A 7 VKEIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLESTG-ESAFKMILDLLKSLWKS--STITIDQMKR 82 (129)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHTC-GGGHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHT--TCSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhCC-CccHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHC--CCcCHHHHHH
Confidence 47788899999888788999999999873 44333 2 334456653 33445556667777655 4788887543
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccC
Q 004445 107 LIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLD 144 (753)
Q Consensus 107 lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d 144 (753)
=-.-+++.+--..- .-|.+-+.+.+.+++.++-||+.
T Consensus 83 Gf~~v~~~l~Dl~l-DiP~a~~~l~~~v~~ai~~g~l~ 119 (129)
T 2nsz_A 83 GYERIYNEIPDINL-DVPHSYSVLERFVEECFQAGIIS 119 (129)
T ss_dssp HHHHHHHHHHHHHH-HSTTHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHhhChHhhc-CccchHHHHHHHHHHHHHCCCCC
Confidence 33333333322210 12556777888899999999987
No 32
>4fdd_B RNA-binding protein FUS; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens}
Probab=38.68 E-value=13 Score=24.01 Aligned_cols=14 Identities=64% Similarity=1.123 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCCC
Q 004445 11 GGGDDGGGGGGPAD 24 (753)
Q Consensus 11 ~~~~~~~~~~~~md 24 (753)
|||+.+|.|.|.||
T Consensus 2 gg~drgG~gpgKM~ 15 (29)
T 4fdd_B 2 GGGDRGGFGPGKMD 15 (29)
T ss_pred CccccCCcCCcccc
Confidence 56677777778888
No 33
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.56 E-value=1.9e+02 Score=26.51 Aligned_cols=108 Identities=12% Similarity=0.038 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHH-H----HHHHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHHH
Q 004445 32 MHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYK-A----CQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKS 106 (753)
Q Consensus 32 ~~~lE~~~~~ly~~~~r~~Ae~~L~~f~~s~~~~~-~----c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~ 106 (753)
..++..+.+.++...+-++|.+-+.++.. |.-.. . .-.-||++ ++-.+=..+..|..+... ..++.+|-..
T Consensus 9 ~kki~~lL~EY~~~~D~~EA~~cl~EL~~-p~f~~e~V~~~i~~alE~~-~~~~re~~~~LL~~L~~~--~~is~~q~~~ 84 (152)
T 2ion_A 9 VKEIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLEST-GESAFKMILDLLKSLWKS--STITIDQMKR 84 (152)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHTC-GGGHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHT--TCSCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHC--CCcCHHHHHH
Confidence 37788899999988789999999999974 44332 2 34455665 344555566677777665 5788887544
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccC
Q 004445 107 LIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLD 144 (753)
Q Consensus 107 lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d 144 (753)
=-.-+++.+--..- .-|.+-+.+.+.+++.+.-||+.
T Consensus 85 Gf~~vl~~ldDl~l-DiP~A~~~la~~v~~ai~~g~l~ 121 (152)
T 2ion_A 85 GYERIYNEIPDINL-DVPHSYSVLERFVEECFQAGIIS 121 (152)
T ss_dssp HHHHHHHHHHHHHH-HSTTHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhChHhcc-CccchHHHHHHHHHHHHHCCCCC
Confidence 33333333322210 12556777888899999999987
No 34
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=35.35 E-value=4e+02 Score=27.68 Aligned_cols=59 Identities=7% Similarity=-0.104 Sum_probs=39.6
Q ss_pred CchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccC
Q 004445 76 QVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLD 144 (753)
Q Consensus 76 ~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d 144 (753)
.++.++-.|-..|++.-.. +..+...+|++.+.+ . +.+..||.....++-..+|+.|..
T Consensus 13 ~d~~~r~~Ae~~L~~~~~~--------~~~~~~~~L~~il~~-~-~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (462)
T 1ibr_B 13 PDRLELEAAQKFLERAAVE--------NLPTFLVELSRVLAN-P-GNSQVARVAAGLQIKNSLTSKDPD 71 (462)
T ss_dssp SCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHC-T-TSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred CCHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHc-C-CCChHHHHHHHHHHHHhccccchH
Confidence 3446777787777763321 244556667776654 2 457788988888888898888743
No 35
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=32.81 E-value=3.3e+02 Score=29.50 Aligned_cols=141 Identities=11% Similarity=0.048 Sum_probs=86.6
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHhhhc-CC----------ChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccC
Q 004445 33 HSIEIACSSIQMHVN--PAAAEATILGLCQ-SP----------QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFL 99 (753)
Q Consensus 33 ~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~-s~----------~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l 99 (753)
..++.+++.+..+.. |..|-..|..+-. .+ ..++....+|..++++.+++.|+.+|.+....
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~----- 148 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG----- 148 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS-----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC-----
Confidence 557778888876532 5667677766632 22 34666777888777799999999999998764
Q ss_pred CHHHHHHHHH-HHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhH-----HHHHHHHHHcccCCchhHHHH
Q 004445 100 TADEKKSLIG-FCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEA-----FFSQVHQAVLGIHGVDTQFIG 173 (753)
Q Consensus 100 ~~~~r~~lr~-~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~-----~i~ei~~~l~~~~s~~~~~~g 173 (753)
+++.+..+.. -.+..+...-.+...-|+...+.++..|...+ +..+.. .+.-+.+++....++.....+
T Consensus 149 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~-----~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a 223 (528)
T 4b8j_A 149 TSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDS-----PKCRDLVLANGALLPLLAQLNEHTKLSMLRNA 223 (528)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC-----HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHH
T ss_pred CHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC-----hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHH
Confidence 2444443332 23333333322345678888888888886421 112222 345566666433456666777
Q ss_pred HHHHHHHHhh
Q 004445 174 INFLESLVSE 183 (753)
Q Consensus 174 l~iL~~lv~E 183 (753)
+..|..+...
T Consensus 224 ~~~L~~L~~~ 233 (528)
T 4b8j_A 224 TWTLSNFCRG 233 (528)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHHHHcC
Confidence 7788877653
No 36
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=32.63 E-value=1.8e+02 Score=26.63 Aligned_cols=99 Identities=9% Similarity=-0.114 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHH----hccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHH-
Q 004445 33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFI----LENSQVANARFQAAAAIRDAAMREWSFLTADEKKSL- 107 (753)
Q Consensus 33 ~~lE~~~~~ly~~~~r~~Ae~~L~~f~~s~~~~~~c~~I----Le~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~l- 107 (753)
..+|+|+...+..+|-...-++--..+..++.-..|-.. |..+.++.++++|+++|+..+.+. +..-..++
T Consensus 19 ~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNC----G~~fh~eia 94 (152)
T 3rru_A 19 HLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNC----GPSFQSLIV 94 (152)
T ss_dssp HHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHS----CHHHHHHHS
T ss_pred HHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhc----CHHHHHHHH
Confidence 346777666665555444444444444444443333222 344678999999999999999885 33333344
Q ss_pred -HHHHHHHHHhc---CCCCchHHHHHHHHHHH
Q 004445 108 -IGFCLCFVMQH---ASSPEGYVQAKISSVAA 135 (753)
Q Consensus 108 -r~~ll~yl~~~---~~~l~~~V~~~l~~~la 135 (753)
|.|+-+.+... ....+.-|++++..++-
T Consensus 95 sk~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~ 126 (152)
T 3rru_A 95 KKEFVKENLVKLLNPRYNLPLDIQNRILNFIK 126 (152)
T ss_dssp SHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 56775532222 11345568888776554
No 37
>4g4s_P Proteasome assembly chaperone 2; alpha beta, NTN-hydrolase, peptide binding, hydrolase-chaper complex; HET: LDZ; 2.49A {Saccharomyces cerevisiae}
Probab=32.14 E-value=34 Score=34.80 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=23.6
Q ss_pred cccccCCcchhHhhcccchHHHHHHHH
Q 004445 287 CIIVQPGPAWCDALISSGHIVWLLNLY 313 (753)
Q Consensus 287 ~~t~~~p~~Wr~~l~~~~~l~llf~ly 313 (753)
....++|.+|+-++-++..-++|.++|
T Consensus 242 ~~~w~~P~SW~~lfG~~~~~~~f~~~~ 268 (269)
T 4g4s_P 242 IVKFVRPISWQGAYGMADARDKFVDLY 268 (269)
T ss_dssp -CCCCCBGGGGGTTCSSCHHHHHHHHH
T ss_pred cCCccCCCccccccCCCCCchHHHhhc
Confidence 346899999999999999899999998
No 38
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.11 E-value=3.6e+02 Score=27.91 Aligned_cols=108 Identities=11% Similarity=0.002 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHH----hccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHH
Q 004445 32 MHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFI----LENSQVANARFQAAAAIRDAAMREWSFLTADEKKSL 107 (753)
Q Consensus 32 ~~~lE~~~~~ly~~~~r~~Ae~~L~~f~~s~~~~~~c~~I----Le~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~l 107 (753)
...++.+.+.++...+-++|.+-+.++....--...+..+ |+++ +-.+=.++..|..+... ..++.++-..=
T Consensus 11 ~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~--~~~re~~~~Ll~~L~~~--~~is~~~~~~G 86 (339)
T 1ug3_A 11 EKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERS--AIAREHMGQLLHQLLCA--GHLSTAQYYQG 86 (339)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHT--TSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHC--CCCCHHHHHHH
Confidence 4778888888888777788888877776321222234444 3443 34444555666666655 57777765443
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccC
Q 004445 108 IGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLD 144 (753)
Q Consensus 108 r~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d 144 (753)
-.-+++.+--..- .-|.....+...+++.+..||+.
T Consensus 87 f~~~~~~l~Dl~l-DiP~a~~~La~~v~~~i~~g~l~ 122 (339)
T 1ug3_A 87 LYEILELAEDMEI-DIPHVWLYLAELVTPILQEGGVP 122 (339)
T ss_dssp HHHHHHHHHHHTT-TCTTHHHHHHHHHGGGGSTTSCC
T ss_pred HHHHHhhChHhhc-CccchHHHHHHHHHHHHHCCCCC
Confidence 3334444433331 23566778888888888888877
No 39
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=28.95 E-value=3.4e+02 Score=26.18 Aligned_cols=63 Identities=11% Similarity=0.021 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHHhc---cCCchhHHHHHHHHHHHHHhhc
Q 004445 33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILE---NSQVANARFQAAAAIRDAAMRE 95 (753)
Q Consensus 33 ~~lE~~~~~ly~~~~r~~Ae~~L~~f~~s~~~~~~c~~ILe---~S~~~y~~f~A~~~L~~~i~~~ 95 (753)
..+|.|+...+..+|-...-++-...+..++.-..+-..|. ++.|+.++++|+.+|+..+.+-
T Consensus 8 ~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNc 73 (220)
T 1dvp_A 8 KNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNC 73 (220)
T ss_dssp HHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Confidence 34677776666555533333444444444443333222221 4689999999999999988874
No 40
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=28.32 E-value=1.1e+02 Score=34.78 Aligned_cols=92 Identities=10% Similarity=0.043 Sum_probs=59.5
Q ss_pred CCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHhcccCCCCCchhH
Q 004445 75 SQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHA--SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEA 152 (753)
Q Consensus 75 S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~ll~yl~~~~--~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~ 152 (753)
+.|++++-.|+.+|-.... ++ +-.++...+.+.- .+..+||+.+.+.++.++.+.. ++.-+. +.
T Consensus 122 ~~n~~ir~lALr~L~~i~~-------~e----~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~--~~ 187 (621)
T 2vgl_A 122 SRNPTFMGLALHCIANVGS-------RE----MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPM--GD 187 (621)
T ss_dssp SCCHHHHHHHHHHHHHHCC-------HH----HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCC--CS
T ss_pred CCCHHHHHHHHHHhhccCC-------HH----HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcCc--hh
Confidence 5677777777777766522 22 4445555555443 4678999999999999999964 342211 24
Q ss_pred HHHHHHHHHcccCCchhHHHHHHHHHHHH
Q 004445 153 FFSQVHQAVLGIHGVDTQFIGINFLESLV 181 (753)
Q Consensus 153 ~i~ei~~~l~~~~s~~~~~~gl~iL~~lv 181 (753)
+++.+.+++.. .++....-++.++.++.
T Consensus 188 ~~~~l~~lL~d-~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 188 WTSRVVHLLND-QHLGVVTAATSLITTLA 215 (621)
T ss_dssp CHHHHHHHTTC-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCccHHHHHHHHHHHHH
Confidence 77888888863 34544556666666654
No 41
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=27.25 E-value=3.9e+02 Score=24.98 Aligned_cols=140 Identities=13% Similarity=0.094 Sum_probs=84.2
Q ss_pred HHHHHHHhhCCCC--HHHHHHHHHhhhc-CC---------ChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCHH
Q 004445 35 IEIACSSIQMHVN--PAAAEATILGLCQ-SP---------QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTAD 102 (753)
Q Consensus 35 lE~~~~~ly~~~~--r~~Ae~~L~~f~~-s~---------~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~ 102 (753)
++.+++.+..+.. +..|-..|.++.. .+ ..++....+|. +.++.++..|+.+|.+.... +++
T Consensus 88 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~-----~~~ 161 (252)
T 4hxt_A 88 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASG-----PDE 161 (252)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTS-----CHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcC-----CHH
Confidence 4445555544321 5667777777773 22 34555666665 45588999999999987654 233
Q ss_pred HHHHHH-HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCc-----hhHHHHHHHHHHcccCCchhHHHHHHH
Q 004445 103 EKKSLI-GFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSD-----KEAFFSQVHQAVLGIHGVDTQFIGINF 176 (753)
Q Consensus 103 ~r~~lr-~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~-----~~~~i~ei~~~l~~~~s~~~~~~gl~i 176 (753)
.+..+. .-++..+...-.+....|+...+.++..+... .+.. ....++.+.+++.. +++..+..++..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~~ 235 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-----PTSAIKAIVDAGGVEVLQKLLTS-TDSEVQKEAQRA 235 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-----BHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-----CHHHHHHHHHCCCHHHHHHHHCC-CcHHHHHHHHHH
Confidence 322221 12223333332234567888888888888741 1111 12356777788875 567788899999
Q ss_pred HHHHHhhhCC
Q 004445 177 LESLVSEFSP 186 (753)
Q Consensus 177 L~~lv~Efs~ 186 (753)
|..+......
T Consensus 236 L~~l~~~~~~ 245 (252)
T 4hxt_A 236 LENIKSGGWL 245 (252)
T ss_dssp HHHHHHTCBC
T ss_pred HHHHHcCCCc
Confidence 9998876544
No 42
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.71 E-value=4.3e+02 Score=25.64 Aligned_cols=61 Identities=11% Similarity=0.015 Sum_probs=34.1
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHH-HHHh--ccCCchhHHHHHHHHHHHHHhhc
Q 004445 35 IEIACSSIQMHVNPAAAEATILGLCQSPQPYKAC-QFIL--ENSQVANARFQAAAAIRDAAMRE 95 (753)
Q Consensus 35 lE~~~~~ly~~~~r~~Ae~~L~~f~~s~~~~~~c-~~IL--e~S~~~y~~f~A~~~L~~~i~~~ 95 (753)
+|+|....+..+|-...-++--..+..++.-..+ +.|- =++.||.++++|+++|+..+.+-
T Consensus 13 i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNc 76 (226)
T 3zyq_A 13 LDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNC 76 (226)
T ss_dssp HHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 5555555444344333333333334444432222 2221 13789999999999999988874
No 43
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=22.67 E-value=4.7e+02 Score=24.59 Aligned_cols=122 Identities=12% Similarity=0.060 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhhcC----------CChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHHH-HHHHHHHH
Q 004445 48 PAAAEATILGLCQS----------PQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLI-GFCLCFVM 116 (753)
Q Consensus 48 r~~Ae~~L~~f~~s----------~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr-~~ll~yl~ 116 (753)
+..|-..|.++... ...++....+|.. .++.++-.|+.+|.+.... +...+..+. .-.+..+.
T Consensus 71 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i~~L~ 144 (252)
T 4db8_A 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASG-----GNEQIQAVIDAGALPALV 144 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTS-----CHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcC-----CchHHHHHHHCCCHHHHH
Confidence 56677777777653 2345566666665 5789999999999887544 222212222 12333333
Q ss_pred hcCCCCchHHHHHHHHHHHHHHHhcccCCCCCch-----hHHHHHHHHHHcccCCchhHHHHHHHHHHHH
Q 004445 117 QHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDK-----EAFFSQVHQAVLGIHGVDTQFIGINFLESLV 181 (753)
Q Consensus 117 ~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~-----~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv 181 (753)
+.-.+...-|+...+.++..+.... +..+ ...++-+.+++.. .++..+..++..|..+.
T Consensus 145 ~lL~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 145 QLLSSPNEQILQEALWALSNIASGG-----NEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIA 208 (252)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTCHHHHHHGGGC-SSHHHHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHcCC-----hHHHHHHHHCCCHHHHHHHHCC-CCHHHHHHHHHHHHHHh
Confidence 3322345678888888888876422 1111 2345677777774 46677778888888876
No 44
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=20.47 E-value=5.9e+02 Score=24.70 Aligned_cols=133 Identities=9% Similarity=0.001 Sum_probs=81.5
Q ss_pred HHHHHHHHHh-hh-cCCC------h----HHHHHHHhccCCchhHHHHHHHHHHHHHhhcc-ccCCHHHHHHHHHHHHHH
Q 004445 48 PAAAEATILG-LC-QSPQ------P----YKACQFILENSQVANARFQAAAAIRDAAMREW-SFLTADEKKSLIGFCLCF 114 (753)
Q Consensus 48 r~~Ae~~L~~-f~-~s~~------~----~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W-~~l~~~~r~~lr~~ll~y 114 (753)
|++|-..|.. +- ..|. . +......|.+-+|+.+.-.|+.+|......-= ..+.. .-... ++.-
T Consensus 33 Rk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~---~y~~~-llp~ 108 (249)
T 2qk1_A 33 RVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK---DYVSL-VFTP 108 (249)
T ss_dssp HHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH---HHHHH-HHHH
T ss_pred HHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH---HHHHH-HHHH
Confidence 7777666666 53 2221 1 23445566677888888888888888775421 11221 22222 3334
Q ss_pred HHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHHHHhhhC
Q 004445 115 VMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS 185 (753)
Q Consensus 115 l~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~Efs 185 (753)
++.+-.+-.+-|++++..++..|.+.-=+......-+.+++++...+.+ .++....-.+.+|..++....
T Consensus 109 ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~-k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 109 LLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH-KTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcC
Confidence 4444334557788998888888888641111000023588999998875 477778889999999987654
No 45
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=20.44 E-value=8.1e+02 Score=26.27 Aligned_cols=226 Identities=8% Similarity=-0.044 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCC--HHHHHHHHHhhhcC----------CChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCHH
Q 004445 35 IEIACSSIQMHVN--PAAAEATILGLCQS----------PQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTAD 102 (753)
Q Consensus 35 lE~~~~~ly~~~~--r~~Ae~~L~~f~~s----------~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~ 102 (753)
+..+++.+..+.. |.+|-..|.++... ...++....+|.. .++.++-.|+.+|..+....-......
T Consensus 175 i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~ 253 (530)
T 1wa5_B 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWS 253 (530)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCCCCcHH
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHHHHh
Q 004445 103 EKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVS 182 (753)
Q Consensus 103 ~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~ 182 (753)
...++-..|+..+ .+...-|+...+.++..+....=.....-....+++.+.+++.. .++..+.-++..|..++.
T Consensus 254 ~~~~~l~~L~~lL----~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~-~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 254 VVSQALPTLAKLI----YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH-ESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp HHGGGHHHHHHHT----TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHH----cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC-CChhhHHHHHHHHHHHHc
Q ss_pred hhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHhcccccccCCC
Q 004445 183 EFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTS 262 (753)
Q Consensus 183 Efs~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~ 262 (753)
.... .....++...+..+..+.-. .+..+...++.++.++
T Consensus 329 ~~~~--------------~~~~~~~~~~l~~L~~lL~~----------------~~~~vr~~A~~aL~~l---------- 368 (530)
T 1wa5_B 329 GNDL--------------QTQVVINAGVLPALRLLLSS----------------PKENIKKEACWTISNI---------- 368 (530)
T ss_dssp SCHH--------------HHHHHHHTTHHHHHHHHTTC----------------SCHHHHHHHHHHHHHH----------
T ss_pred CCHH--------------HHHHHHHcchHHHHHHHHcC----------------CCHHHHHHHHHHHHHH----------
Q ss_pred CccchhhhcccccccccCCCCCCccccccCCcchhHhhcccchHHHHHHHHHHHHhhcccCCCCCCcccHHHHHHHHHHH
Q 004445 263 GRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQL 342 (753)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~cL~qL 342 (753)
......+...+.+.+.+..+.++... .++.+...+..+|..+
T Consensus 369 ---------------------------~~~~~~~~~~~~~~~~l~~L~~lL~~-----------~~~~v~~~a~~aL~~l 410 (530)
T 1wa5_B 369 ---------------------------TAGNTEQIQAVIDANLIPPLVKLLEV-----------AEYKTKKEACWAISNA 410 (530)
T ss_dssp ---------------------------TTSCHHHHHHHHHTTCHHHHHHHHHH-----------SCHHHHHHHHHHHHHH
T ss_pred ---------------------------HcCCHHHHHHHHHCCCHHHHHHHHhc-----------CCHHHHHHHHHHHHHH
Q ss_pred hc
Q 004445 343 CS 344 (753)
Q Consensus 343 aS 344 (753)
+.
T Consensus 411 ~~ 412 (530)
T 1wa5_B 411 SS 412 (530)
T ss_dssp HH
T ss_pred Hh
Done!