Query 004446
Match_columns 753
No_of_seqs 199 out of 1187
Neff 4.2
Searched_HMMs 29240
Date Tue Mar 26 01:29:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2olm_A Nucleoporin-like protei 100.0 1.2E-38 3.9E-43 302.7 10.1 124 2-125 3-128 (140)
2 2iqj_A Stromal membrane-associ 100.0 8.3E-37 2.8E-41 288.1 5.9 120 4-126 7-129 (134)
3 2crr_A Stromal membrane-associ 100.0 1.1E-36 3.7E-41 289.5 6.4 121 4-127 9-132 (141)
4 3jue_A Arfgap with coiled-coil 100.0 2.4E-33 8.1E-38 299.0 7.4 124 2-126 23-151 (368)
5 3lju_X ARF-GAP with dual PH do 100.0 7.1E-32 2.4E-36 290.7 10.1 123 4-127 14-139 (386)
6 2owa_A Arfgap-like finger doma 100.0 9.8E-31 3.3E-35 247.9 7.2 113 6-122 18-133 (138)
7 2crw_A ARF GAP 3, ADP-ribosyla 100.0 2.3E-30 7.9E-35 248.0 4.7 93 1-95 8-104 (149)
8 3dwd_A ADP-ribosylation factor 100.0 1.9E-29 6.4E-34 240.7 8.1 115 6-124 20-145 (147)
9 2b0o_E UPLC1; arfgap, structur 99.9 7E-28 2.4E-32 247.8 9.8 120 6-125 24-147 (301)
10 3lvq_E ARF-GAP with SH3 domain 99.9 6.3E-28 2.1E-32 262.8 7.0 122 6-127 5-130 (497)
11 2p57_A GTPase-activating prote 99.9 1.5E-27 5.3E-32 227.2 6.8 87 7-93 20-110 (144)
12 1dcq_A PYK2-associated protein 99.9 2.8E-27 9.5E-32 240.4 7.9 119 9-127 2-124 (278)
13 3sub_A ADP-ribosylation factor 99.9 2.6E-27 9E-32 229.0 5.7 88 7-94 4-95 (163)
14 3o47_A ADP-ribosylation factor 99.9 2.1E-25 7.2E-30 233.6 7.7 90 5-94 18-110 (329)
15 1u5k_A Hypothetical protein; O 84.0 1.5 5.2E-05 43.9 6.4 55 15-82 137-195 (244)
16 2zet_C Melanophilin; complex, 48.1 11 0.00036 36.4 3.1 34 23-56 67-105 (153)
17 4glq_A Methyl-accepting chemot 46.0 15 0.00051 34.5 3.8 40 42-94 119-158 (171)
18 1ffk_W Ribosomal protein L37AE 44.8 19 0.00064 30.9 3.8 41 11-53 13-54 (73)
19 1gnf_A Transcription factor GA 40.1 12 0.0004 29.5 1.6 35 23-57 3-38 (46)
20 4gat_A Nitrogen regulatory pro 39.6 14 0.00049 31.0 2.2 35 22-56 7-42 (66)
21 1zbd_B Rabphilin-3A; G protein 38.4 19 0.00066 33.8 3.2 50 5-54 30-90 (134)
22 2vut_I AREA, nitrogen regulato 37.8 14 0.00048 28.6 1.7 32 25-56 2-34 (43)
23 2kgo_A Uncharacterized protein 37.7 4.7 0.00016 37.0 -1.1 31 24-54 56-87 (108)
24 2cp8_A NEXT to BRCA1 gene 1 pr 37.0 1.2 4.2E-05 36.3 -4.5 28 178-205 13-40 (54)
25 1d4u_A Nucleotide excision rep 35.1 8.2 0.00028 35.5 0.0 32 23-54 4-36 (111)
26 1tjl_A DNAK suppressor protein 35.0 7.2 0.00025 37.4 -0.4 33 22-54 109-142 (151)
27 2bwb_A Ubiquitin-like protein 31.6 2.5 8.6E-05 32.9 -3.4 28 178-205 11-38 (46)
28 4hc9_A Trans-acting T-cell-spe 30.1 14 0.00047 34.0 0.6 32 24-55 5-37 (115)
29 3dfx_A Trans-acting T-cell-spe 29.7 18 0.00062 30.2 1.3 36 22-57 5-41 (63)
30 1dl6_A Transcription factor II 28.4 31 0.0011 27.9 2.4 31 24-55 11-41 (58)
31 1wr1_B Ubiquitin-like protein 24.0 3.7 0.00012 33.6 -3.9 29 177-205 20-48 (58)
32 2dah_A Ubiquilin-3; UBA domain 23.7 3.6 0.00012 33.1 -3.9 28 178-205 13-40 (54)
33 3cc2_Z 50S ribosomal protein L 23.5 25 0.00085 32.7 1.1 41 11-53 46-87 (116)
34 2dna_A Unnamed protein product 23.3 4.2 0.00014 34.4 -3.7 29 177-205 22-50 (67)
35 3k7a_M Transcription initiatio 23.1 34 0.0012 36.2 2.2 31 25-55 22-53 (345)
36 1vq8_Z 50S ribosomal protein L 23.1 28 0.00095 30.4 1.3 41 11-53 13-54 (83)
37 1vej_A Riken cDNA 4931431F19; 23.0 4.4 0.00015 34.8 -3.7 29 177-205 32-60 (74)
38 2cwb_A Chimera of immunoglobul 21.2 6.9 0.00024 35.9 -3.0 29 177-205 69-97 (108)
39 2d8u_A Ubiquitin ligase TRIM63 20.4 69 0.0024 25.2 3.0 43 22-66 6-50 (64)
No 1
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=1.2e-38 Score=302.72 Aligned_cols=124 Identities=35% Similarity=0.689 Sum_probs=116.4
Q ss_pred cchhhhhHHHHHHHHHHHccCCCCCCcCCCCCCCCeeEeceeeeeecccccccccCC--cceeeeccCcCCHHHHHHHHh
Q 004446 2 ANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT--HRVKSVSMAKFTSQEVKALQE 79 (753)
Q Consensus 2 ~~r~kedernekiLr~Llk~pgNk~CADCGs~~P~WaSvN~GVFVC~~CSGIHR~LG--HRVKSlsLD~Wt~eEV~~m~~ 79 (753)
.++.+++|+++++|++|++.++|++|||||+++|+|||+|||||||++|+||||+|| |+||||+||+|++++|++|+.
T Consensus 3 ~~~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~s~VrSl~ld~w~~~~l~~m~~ 82 (140)
T 2olm_A 3 SAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQK 82 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSCCCEEETTTCCCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCcceeeecCCCCCCHHHHHHHHH
Confidence 356689999999999999999999999999999999999999999999999999998 699999999999999999999
Q ss_pred cChHHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHHhhhcccccC
Q 004446 80 GGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGE 125 (753)
Q Consensus 80 gGN~~aN~i~Ea~~~~~~~p~Pdssd~~~lreFIraKYveKrF~~~ 125 (753)
+||.++|+|||+++++...+.|+..+.+.+++||++||++|+|+.+
T Consensus 83 ~GN~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~ 128 (140)
T 2olm_A 83 HGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVP 128 (140)
T ss_dssp CHHHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCC
T ss_pred hccHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCC
Confidence 9999999999999987767788877777889999999999999865
No 2
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=8.3e-37 Score=288.14 Aligned_cols=120 Identities=28% Similarity=0.564 Sum_probs=104.6
Q ss_pred hhhhhHHHHHHHHHHHccCCCCCCcCCCCCCCCeeEeceeeeeecccccccccCC---cceeeeccCcCCHHHHHHHHhc
Q 004446 4 RLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEG 80 (753)
Q Consensus 4 r~kedernekiLr~Llk~pgNk~CADCGs~~P~WaSvN~GVFVC~~CSGIHR~LG---HRVKSlsLD~Wt~eEV~~m~~g 80 (753)
..+++|+++++|++|++.++|++|||||+++|+|||+|||||||++|+||||+|| ++||||+||+|++++|++|+.+
T Consensus 7 ~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~ 86 (134)
T 2iqj_A 7 SVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM 86 (134)
T ss_dssp ------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTC
T ss_pred cHhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999999998 4999999999999999999999
Q ss_pred ChHHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHHhhhcccccCC
Q 004446 81 GNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGER 126 (753)
Q Consensus 81 GN~~aN~i~Ea~~~~~~~p~Pdssd~~~lreFIraKYveKrF~~~~ 126 (753)
||.++|+|||++++.. ...|.. .+.+|+|||+||++|+|+.+.
T Consensus 87 GN~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~~ 129 (134)
T 2iqj_A 87 GNGKANRLYEAYLPET-FRRPQI--DPAVEGFIRDKYEKKKYMDRS 129 (134)
T ss_dssp HHHHHHHHHTTTCCSS-CCCCCS--HHHHHHHHHHHHTSCTTCCTT
T ss_pred chHHHHHHHHhcCCcc-CCCCCc--hHHHHHHHHHHHhCCeeeCCc
Confidence 9999999999999754 344543 246789999999999999653
No 3
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=289.55 Aligned_cols=121 Identities=27% Similarity=0.580 Sum_probs=109.5
Q ss_pred hhhhhHHHHHHHHHHHccCCCCCCcCCCCCCCCeeEeceeeeeecccccccccCC---cceeeeccCcCCHHHHHHHHhc
Q 004446 4 RLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEG 80 (753)
Q Consensus 4 r~kedernekiLr~Llk~pgNk~CADCGs~~P~WaSvN~GVFVC~~CSGIHR~LG---HRVKSlsLD~Wt~eEV~~m~~g 80 (753)
..+++|+++++|++|++.++|++|||||+++|+|||+|||||||++|+||||.|| +|||||+||+|++++|++|+.+
T Consensus 9 ~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~ 88 (141)
T 2crr_A 9 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDM 88 (141)
T ss_dssp TTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHH
Confidence 3468899999999999999999999999999999999999999999999999998 4999999999999999999999
Q ss_pred ChHHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHHhhhcccccCCC
Q 004446 81 GNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGERN 127 (753)
Q Consensus 81 GN~~aN~i~Ea~~~~~~~p~Pdssd~~~lreFIraKYveKrF~~~~~ 127 (753)
||.++|+|||++++.. ...|.. .+.+++|||+||++|+|+.+..
T Consensus 89 GN~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~~~ 132 (141)
T 2crr_A 89 GNTKARLLYEANLPEN-FRRPQT--DQAVEFFIRDKYEKKKYYDKNA 132 (141)
T ss_dssp HHHHHHHHGGGSCCTT-CCCCCS--HHHHHHHHHHHHTSCTTCCCGG
T ss_pred ccHHHHHHHHhcCCcc-cCCCCc--hHHHHHHHHHHHhcCcccCCCc
Confidence 9999999999999764 345543 2457899999999999997643
No 4
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.98 E-value=2.4e-33 Score=299.04 Aligned_cols=124 Identities=20% Similarity=0.424 Sum_probs=105.3
Q ss_pred cchhhhhHHHHHHHHHHHccCCCCCCcCCCCCCCCeeEeceeeeeecccccccccCC---cceeeeccCcCCHHHHHHHH
Q 004446 2 ANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQ 78 (753)
Q Consensus 2 ~~r~kedernekiLr~Llk~pgNk~CADCGs~~P~WaSvN~GVFVC~~CSGIHR~LG---HRVKSlsLD~Wt~eEV~~m~ 78 (753)
++|.|++|+++++|+.|++.++|++||||++++|+|||+|||||||++|+||||.|| +|||||+||+|+.++|++|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~ 102 (368)
T 3jue_A 23 MARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMC 102 (368)
T ss_dssp ---------CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999998 49999999999999999999
Q ss_pred hcChHHHHHHHhhcCCCC--CCCCCCCChHHHHHHHHHHHhhhcccccCC
Q 004446 79 EGGNQRAKEVLLKEWDPQ--RQSFPDSSNVERLRNFIKHVYVDRRYTGER 126 (753)
Q Consensus 79 ~gGN~~aN~i~Ea~~~~~--~~p~Pdssd~~~lreFIraKYveKrF~~~~ 126 (753)
.+||.++|+|||++|+.. +++.|++. .+.+++||++||++|+|+.+.
T Consensus 103 ~~gn~~~n~~~e~~~~~~~~~kp~~~~~-~~~re~fIr~KY~~k~f~~~l 151 (368)
T 3jue_A 103 ELGNVIINQIYEARVEAMAVKKPGPSCS-RQEKEAWIHAKYVEKKFLTKL 151 (368)
T ss_dssp HSCHHHHHHHHTTTTTTTTCCCCCTTSC-HHHHHHHHHHHHTSCTTCCSC
T ss_pred HHccHHHHHHHHhhcccccCcCCCCCCC-HHHHHHHHHHHHHhhcccccc
Confidence 999999999999999864 34555443 456788999999999999754
No 5
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.97 E-value=7.1e-32 Score=290.68 Aligned_cols=123 Identities=22% Similarity=0.414 Sum_probs=110.4
Q ss_pred hhhhhHHHHHHHHHHHccCCCCCCcCCCCCCCCeeEeceeeeeecccccccccCCc--ceeeeccCcCCHHHHHHHHhcC
Q 004446 4 RLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTH--RVKSVSMAKFTSQEVKALQEGG 81 (753)
Q Consensus 4 r~kedernekiLr~Llk~pgNk~CADCGs~~P~WaSvN~GVFVC~~CSGIHR~LGH--RVKSlsLD~Wt~eEV~~m~~gG 81 (753)
..+++++++++|++|++.++|+.|||||+++|+|||+|||||||++|+||||+|.| +||||+||+|++++|++|+.+|
T Consensus 14 ~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l~his~v~s~~ld~w~~~~~~~~~~~g 93 (386)
T 3lju_X 14 LYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRLDAWEEAQVEFMASHG 93 (386)
T ss_dssp HHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTCTTTCCEEETTTSCCCHHHHHHHHHSS
T ss_pred hhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCCCccceeeeecccCCCHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999999999999999999985 9999999999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCCh-HHHHHHHHHHHhhhcccccCCC
Q 004446 82 NQRAKEVLLKEWDPQRQSFPDSSN-VERLRNFIKHVYVDRRYTGERN 127 (753)
Q Consensus 82 N~~aN~i~Ea~~~~~~~p~Pdssd-~~~lreFIraKYveKrF~~~~~ 127 (753)
|.++|+|||++++.. ...|+.++ ...+++|||+||++|+|+....
T Consensus 94 N~~~~~~~e~~~~~~-~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 94 NDAARARFESKVPSF-YYRPTPSDCQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp HHHHHHHHTTTCCTT-SCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred chHHHHHHhccCCcc-CCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence 999999999999764 33454333 3456789999999999997653
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=99.96 E-value=9.8e-31 Score=247.89 Aligned_cols=113 Identities=24% Similarity=0.408 Sum_probs=99.2
Q ss_pred hhhHHHHHHHHHHHccCCCCCCcCCCCCCCCeeEeceeeeeecccccccccCC-c--ceeeeccCcCCHHHHHHHHhcCh
Q 004446 6 KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEGGN 82 (753)
Q Consensus 6 kedernekiLr~Llk~pgNk~CADCGs~~P~WaSvN~GVFVC~~CSGIHR~LG-H--RVKSlsLD~Wt~eEV~~m~~gGN 82 (753)
..++..+++|+.|++.++|++|+|||+++|+|||+|||||||++|+||||+|| | |||||+||+|++++|++|+.+||
T Consensus 18 ~~~~~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN 97 (138)
T 2owa_A 18 VSDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGN 97 (138)
T ss_dssp BCHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCH
T ss_pred CCHHHHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhcc
Confidence 45567788888899999999999999999999999999999999999999998 5 99999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHHhhhccc
Q 004446 83 QRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRY 122 (753)
Q Consensus 83 ~~aN~i~Ea~~~~~~~p~Pdssd~~~lreFIraKYveKrF 122 (753)
.++|+|||++... .|+....++.+.||..||++|.-
T Consensus 98 ~~an~~~e~~~~~----~~~~~~~~kY~s~~a~~Y~~kL~ 133 (138)
T 2owa_A 98 GRARNYFKQVLGV----NFSPKTKEYASSICGRQYKQILD 133 (138)
T ss_dssp HHHHHHHHHHTCT----TCCGGGCHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC----CCCCCHHHHHhhHHHHHHHHHHH
Confidence 9999999986432 13334456677799999999853
No 7
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=2.3e-30 Score=248.00 Aligned_cols=93 Identities=23% Similarity=0.502 Sum_probs=85.9
Q ss_pred CcchhhhhHHHHHHHHHHHccCCCCCCcCCCCCCCCeeEeceeeeeecccccccccCC-c--ceeeeccCc-CCHHHHHH
Q 004446 1 MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAK-FTSQEVKA 76 (753)
Q Consensus 1 M~~r~kedernekiLr~Llk~pgNk~CADCGs~~P~WaSvN~GVFVC~~CSGIHR~LG-H--RVKSlsLD~-Wt~eEV~~ 76 (753)
|++..+ ++++++|+.|++.++|++|+||++++|+|||+|||||||++|+||||.|| | +||||+||. |++++|++
T Consensus 8 m~~~~k--~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~ 85 (149)
T 2crw_A 8 MGDPSK--QDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRC 85 (149)
T ss_dssp SCCCCH--HHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHH
T ss_pred cccCCH--HHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHH
Confidence 566433 56789999999999999999999999999999999999999999999998 4 999999995 99999999
Q ss_pred HHhcChHHHHHHHhhcCCC
Q 004446 77 LQEGGNQRAKEVLLKEWDP 95 (753)
Q Consensus 77 m~~gGN~~aN~i~Ea~~~~ 95 (753)
|+.+||+++|+|||+++..
T Consensus 86 m~~~GN~~an~~~e~~~~~ 104 (149)
T 2crw_A 86 MQVGGNASASSFFHQHGCS 104 (149)
T ss_dssp HHTTCHHHHHHHHHHHCCC
T ss_pred HHHHhhHHHHHHHHhcCCC
Confidence 9999999999999998753
No 8
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.96 E-value=1.9e-29 Score=240.75 Aligned_cols=115 Identities=24% Similarity=0.503 Sum_probs=90.7
Q ss_pred hhhHHHHHHHHHHHccCCCCCCcCCCCCCCCeeEeceeeeeecccccccccCC-c--ceeeeccCcCCHHHHHHHHhcCh
Q 004446 6 KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEGGN 82 (753)
Q Consensus 6 kedernekiLr~Llk~pgNk~CADCGs~~P~WaSvN~GVFVC~~CSGIHR~LG-H--RVKSlsLD~Wt~eEV~~m~~gGN 82 (753)
..+++++++|++|++.++|++|+||++++|+|||+|||||||++|+||||+|| | +||||+||+|++++|++|+.+||
T Consensus 20 m~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN 99 (147)
T 3dwd_A 20 MASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGN 99 (147)
T ss_dssp --CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCH
T ss_pred CCCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhh
Confidence 36789999999999999999999999999999999999999999999999998 4 99999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCC--------hHHHHHHHHHHHhhhccccc
Q 004446 83 QRAKEVLLKEWDPQRQSFPDSS--------NVERLRNFIKHVYVDRRYTG 124 (753)
Q Consensus 83 ~~aN~i~Ea~~~~~~~p~Pdss--------d~~~lreFIraKYveKrF~~ 124 (753)
.++|+|||++.... |..+ -....|+-|+++++.|.|..
T Consensus 100 ~~an~~~ea~~~~~----~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 100 AKFREFLESQEDYD----PCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp HHHHHHHHTSTTCC----TTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHhCCCCC----CCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 99999999864211 2111 12335567777777777654
No 9
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.94 E-value=7e-28 Score=247.76 Aligned_cols=120 Identities=23% Similarity=0.469 Sum_probs=105.9
Q ss_pred hhhHHHHHHHHHHHccCCCCCCcCCCCCCCCeeEeceeeeeecccccccccCC-c--ceeeeccCcCCHHHHHHHHhcCh
Q 004446 6 KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEGGN 82 (753)
Q Consensus 6 kedernekiLr~Llk~pgNk~CADCGs~~P~WaSvN~GVFVC~~CSGIHR~LG-H--RVKSlsLD~Wt~eEV~~m~~gGN 82 (753)
..++..+++|+.|++.++|++|+||++++|+|+|+|||||||++|+||||.|| | +|||++||.|+.++|.+|+.+||
T Consensus 24 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN 103 (301)
T 2b0o_E 24 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 103 (301)
T ss_dssp ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCC
Confidence 35677899999999999999999999999999999999999999999999998 4 99999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCC-CChHHHHHHHHHHHhhhcccccC
Q 004446 83 QRAKEVLLKEWDPQRQSFPD-SSNVERLRNFIKHVYVDRRYTGE 125 (753)
Q Consensus 83 ~~aN~i~Ea~~~~~~~p~Pd-ssd~~~lreFIraKYveKrF~~~ 125 (753)
.++|+|||+.++......|. .++...+++||+.||++++|...
T Consensus 104 ~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 104 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 99999999999765334443 34566788899999999999764
No 10
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=6.3e-28 Score=262.79 Aligned_cols=122 Identities=22% Similarity=0.455 Sum_probs=107.9
Q ss_pred hhhHHHHHHHHHHHccCCCCCCcCCCCCCCCeeEeceeeeeecccccccccCC---cceeeeccCcCCHHHHHHHHhcCh
Q 004446 6 KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEGGN 82 (753)
Q Consensus 6 kedernekiLr~Llk~pgNk~CADCGs~~P~WaSvN~GVFVC~~CSGIHR~LG---HRVKSlsLD~Wt~eEV~~m~~gGN 82 (753)
+.+|.++++|+.|++.++|+.|+|||+++|+|+|+|+|||||++|+||||+|| +|||||+||.|+.+++++|+.+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN 84 (497)
T 3lvq_E 5 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 84 (497)
T ss_dssp ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCH
T ss_pred hhHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhh
Confidence 35678999999999999999999999999999999999999999999999998 499999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCC-CChHHHHHHHHHHHhhhcccccCCC
Q 004446 83 QRAKEVLLKEWDPQRQSFPD-SSNVERLRNFIKHVYVDRRYTGERN 127 (753)
Q Consensus 83 ~~aN~i~Ea~~~~~~~p~Pd-ssd~~~lreFIraKYveKrF~~~~~ 127 (753)
..+|++||++++....+.|. .++...+++||++||++++|..+..
T Consensus 85 ~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~~ 130 (497)
T 3lvq_E 85 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCT 130 (497)
T ss_dssp HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCCC
T ss_pred HHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhccccccccc
Confidence 99999999999765545554 3455667889999999999987543
No 11
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.5e-27 Score=227.22 Aligned_cols=87 Identities=20% Similarity=0.528 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHHccCCCCCCcCCCCCCCCeeEeceeeeeecccccccccCC---cceeeeccCc-CCHHHHHHHHhcCh
Q 004446 7 EDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAK-FTSQEVKALQEGGN 82 (753)
Q Consensus 7 edernekiLr~Llk~pgNk~CADCGs~~P~WaSvN~GVFVC~~CSGIHR~LG---HRVKSlsLD~-Wt~eEV~~m~~gGN 82 (753)
..++.+++|+.|++.++|++|+|||+++|+|||+|||||||++|+||||+|| ++||||+||. |++++|++|+.+||
T Consensus 20 ~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN 99 (144)
T 2p57_A 20 NKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGN 99 (144)
T ss_dssp CHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCH
Confidence 3456788999999999999999999999999999999999999999999998 4999999996 99999999999999
Q ss_pred HHHHHHHhhcC
Q 004446 83 QRAKEVLLKEW 93 (753)
Q Consensus 83 ~~aN~i~Ea~~ 93 (753)
+++|+|||++.
T Consensus 100 ~~an~~~e~~g 110 (144)
T 2p57_A 100 ANATAFFRQHG 110 (144)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 99999999874
No 12
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.94 E-value=2.8e-27 Score=240.39 Aligned_cols=119 Identities=24% Similarity=0.506 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHccCCCCCCcCCCCCCCCeeEeceeeeeecccccccccCC---cceeeeccCcCCHHHHHHHHhcChHHH
Q 004446 9 EKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEGGNQRA 85 (753)
Q Consensus 9 ernekiLr~Llk~pgNk~CADCGs~~P~WaSvN~GVFVC~~CSGIHR~LG---HRVKSlsLD~Wt~eEV~~m~~gGN~~a 85 (753)
|+++++|+.|++.++|+.|+|||+.+|+|+|+|||+|||++|+||||+|| ++|||++||.|+.+++.+|+.+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 67899999999999999999999999999999999999999999999998 499999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCC-ChHHHHHHHHHHHhhhcccccCCC
Q 004446 86 KEVLLKEWDPQRQSFPDS-SNVERLRNFIKHVYVDRRYTGERN 127 (753)
Q Consensus 86 N~i~Ea~~~~~~~p~Pds-sd~~~lreFIraKYveKrF~~~~~ 127 (753)
|+|||+.++.....+|.. ++...+++||+.||+.++|..+..
T Consensus 82 n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~ 124 (278)
T 1dcq_A 82 NEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKH 124 (278)
T ss_dssp HHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCS
T ss_pred HHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccc
Confidence 999999987654334432 345667889999999999986543
No 13
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.93 E-value=2.6e-27 Score=229.04 Aligned_cols=88 Identities=31% Similarity=0.587 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHcc-CCCCCCcCCCCCCCCeeEeceeeeeecccccccccCC-c--ceeeeccCcCCHHHHHHHHhcCh
Q 004446 7 EDEKNERIIRGLLKL-QDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEGGN 82 (753)
Q Consensus 7 edernekiLr~Llk~-pgNk~CADCGs~~P~WaSvN~GVFVC~~CSGIHR~LG-H--RVKSlsLD~Wt~eEV~~m~~gGN 82 (753)
++...+++|++|++. ++|++|+||++++|+|||++||||||++|+||||.|| | |||||+||+|++++|++|+.+||
T Consensus 4 m~a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN 83 (163)
T 3sub_A 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGN 83 (163)
T ss_dssp HHHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCH
T ss_pred ccHHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCH
Confidence 567789999999996 8999999999999999999999999999999999998 4 99999999999999999999999
Q ss_pred HHHHHHHhhcCC
Q 004446 83 QRAKEVLLKEWD 94 (753)
Q Consensus 83 ~~aN~i~Ea~~~ 94 (753)
.++|++||++..
T Consensus 84 ~~an~~~e~~g~ 95 (163)
T 3sub_A 84 KKCQTYLENYGI 95 (163)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 999999998653
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.91 E-value=2.1e-25 Score=233.61 Aligned_cols=90 Identities=27% Similarity=0.593 Sum_probs=82.4
Q ss_pred hhhhHHHHHHHHHHHccCCCCCCcCCCCCCCCeeEeceeeeeecccccccccCC-c--ceeeeccCcCCHHHHHHHHhcC
Q 004446 5 LKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEGG 81 (753)
Q Consensus 5 ~kedernekiLr~Llk~pgNk~CADCGs~~P~WaSvN~GVFVC~~CSGIHR~LG-H--RVKSlsLD~Wt~eEV~~m~~gG 81 (753)
...+++++++|+.|++.++|++|||||+++|+|||+|||||||++|+||||+|| | +||||+||+|++++|++|+.+|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~g 97 (329)
T 3o47_A 18 GMASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGG 97 (329)
T ss_dssp -----CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCC
T ss_pred ccCCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhC
Confidence 346788999999999999999999999999999999999999999999999998 3 8999999999999999999999
Q ss_pred hHHHHHHHhhcCC
Q 004446 82 NQRAKEVLLKEWD 94 (753)
Q Consensus 82 N~~aN~i~Ea~~~ 94 (753)
|.++|++||+++.
T Consensus 98 N~~~n~~~e~~~~ 110 (329)
T 3o47_A 98 NAKFREFLESQED 110 (329)
T ss_dssp HHHHHHHHHTCSS
T ss_pred cHHHHHHHHhcCC
Confidence 9999999999764
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=84.00 E-value=1.5 Score=43.86 Aligned_cols=55 Identities=16% Similarity=0.332 Sum_probs=40.9
Q ss_pred HHHHHcc----CCCCCCcCCCCCCCCeeEeceeeeeecccccccccCCcceeeeccCcCCHHHHHHHHhcCh
Q 004446 15 IRGLLKL----QDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGN 82 (753)
Q Consensus 15 Lr~Llk~----pgNk~CADCGs~~P~WaSvN~GVFVC~~CSGIHR~LGHRVKSlsLD~Wt~eEV~~m~~gGN 82 (753)
..+|++. |.=..|+.||.....|.+...|.++|..|...+ .++.+++..|+.+-.
T Consensus 137 el~lL~~~G~~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~-------------~l~~~~l~~l~~l~~ 195 (244)
T 1u5k_A 137 SYKLLGLAGVIPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP-------------PYPPAVLDFLRHAVR 195 (244)
T ss_dssp HHHHHTTSSSCCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC-------------CCCHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCCcCccccCCCCCCCcEecccCEEECcccCCCC-------------CCCHHHHHHHHHHHh
Confidence 3456664 444699999998677889999999999997432 477888888876543
No 16
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=48.13 E-value=11 Score=36.35 Aligned_cols=34 Identities=29% Similarity=0.684 Sum_probs=28.6
Q ss_pred CCCCCcCCCCC-----CCCeeEeceeeeeeccccccccc
Q 004446 23 DNRRCINCNSL-----GTQYVCTNFWTFVCTNCSGIHRE 56 (753)
Q Consensus 23 gNk~CADCGs~-----~P~WaSvN~GVFVC~~CSGIHR~ 56 (753)
+...|+-|+.+ +..-.|.+-...||.+|...++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~ 105 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPE 105 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCC
Confidence 45799999996 67777888899999999987765
No 17
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=45.98 E-value=15 Score=34.50 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=30.8
Q ss_pred eeeeeecccccccccCCcceeeeccCcCCHHHHHHHHhcChHHHHHHHhhcCC
Q 004446 42 FWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWD 94 (753)
Q Consensus 42 ~GVFVC~~CSGIHR~LGHRVKSlsLD~Wt~eEV~~m~~gGN~~aN~i~Ea~~~ 94 (753)
+|++.|..|..-+ .|+++||++|+.+.+..+-.|-.+++-
T Consensus 119 ~GlL~~~~~~~~r-------------~w~~~ei~ll~~lA~ql~iAi~qa~l~ 158 (171)
T 4glq_A 119 FGLLIAHQASEPR-------------QWQEIEIDQFSELASTGSLVLERLHFL 158 (171)
T ss_dssp EEEEEEEEESSCC-------------CCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred EEEEEEEeCCCCC-------------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777776543 599999999999999999888877664
No 18
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=44.76 E-value=19 Score=30.94 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=31.6
Q ss_pred HHHHHHHH-HccCCCCCCcCCCCCCCCeeEeceeeeeecccccc
Q 004446 11 NERIIRGL-LKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGI 53 (753)
Q Consensus 11 nekiLr~L-lk~pgNk~CADCGs~~P~WaSvN~GVFVC~~CSGI 53 (753)
.++.+++| +.......|.-||.....+.. .||..|..|--.
T Consensus 13 lRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~~ 54 (73)
T 1ffk_W 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGYK 54 (73)
T ss_pred HHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCcE
Confidence 45666777 567777899999987777665 599999999743
No 19
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=40.06 E-value=12 Score=29.51 Aligned_cols=35 Identities=20% Similarity=0.550 Sum_probs=28.7
Q ss_pred CCCCCcCCCCC-CCCeeEeceeeeeecccccccccC
Q 004446 23 DNRRCINCNSL-GTQYVCTNFWTFVCTNCSGIHREF 57 (753)
Q Consensus 23 gNk~CADCGs~-~P~WaSvN~GVFVC~~CSGIHR~L 57 (753)
+.+.|.+|+.. -|.|=.-..|..||-.|.-.++..
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~ 38 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMN 38 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHT
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHc
Confidence 56899999986 589998888999999998655543
No 20
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=39.62 E-value=14 Score=31.00 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=28.5
Q ss_pred CCCCCCcCCCCC-CCCeeEeceeeeeeccccccccc
Q 004446 22 QDNRRCINCNSL-GTQYVCTNFWTFVCTNCSGIHRE 56 (753)
Q Consensus 22 pgNk~CADCGs~-~P~WaSvN~GVFVC~~CSGIHR~ 56 (753)
.+...|++|+.. -|.|-.-.-|..||-.|.-..+.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~ 42 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKL 42 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHH
Confidence 345799999985 58999988999999999765444
No 21
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=38.44 E-value=19 Score=33.79 Aligned_cols=50 Identities=28% Similarity=0.523 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHHHHcc------CCCCCCcCCCCC-----CCCeeEeceeeeeeccccccc
Q 004446 5 LKEDEKNERIIRGLLKL------QDNRRCINCNSL-----GTQYVCTNFWTFVCTNCSGIH 54 (753)
Q Consensus 5 ~kedernekiLr~Llk~------pgNk~CADCGs~-----~P~WaSvN~GVFVC~~CSGIH 54 (753)
.+|+++..++...|.+. .+...|+-|+.. +..-.|.+-...||.+|.+.+
T Consensus 30 ~~E~~ri~kL~~~l~~~k~~~~~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 30 TMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred HhHHHHHHHHHHHHHHHHHHhccCCCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 34555554444444332 355799999985 344557777888999998876
No 22
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=37.78 E-value=14 Score=28.61 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=26.4
Q ss_pred CCCcCCCCC-CCCeeEeceeeeeeccccccccc
Q 004446 25 RRCINCNSL-GTQYVCTNFWTFVCTNCSGIHRE 56 (753)
Q Consensus 25 k~CADCGs~-~P~WaSvN~GVFVC~~CSGIHR~ 56 (753)
+.|.+|+.. -|.|=.-..|..||-.|.-..|.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~ 34 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKL 34 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHH
Confidence 579999986 58999988999999999865443
No 23
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=37.66 E-value=4.7 Score=36.96 Aligned_cols=31 Identities=13% Similarity=0.167 Sum_probs=20.4
Q ss_pred CCCCcCCCCCCC-CeeEeceeeeeeccccccc
Q 004446 24 NRRCINCNSLGT-QYVCTNFWTFVCTNCSGIH 54 (753)
Q Consensus 24 Nk~CADCGs~~P-~WaSvN~GVFVC~~CSGIH 54 (753)
-.+|.+||.+=| .-.-..-++.+|+.|...+
T Consensus 56 yG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~ 87 (108)
T 2kgo_A 56 LDECEECGAPIPQARREAIPGVRLCIHCQQEK 87 (108)
T ss_dssp CSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHH
T ss_pred CceecccCCcccHHHHhcCCCccccHHHHHHH
Confidence 469999998632 1222333567899998754
No 24
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=37.03 E-value=1.2 Score=36.28 Aligned_cols=28 Identities=7% Similarity=-0.030 Sum_probs=25.6
Q ss_pred CcccccCccCCCCCCchhhhcccCCccc
Q 004446 178 DDKNSRYGYDERSPGNEQENRQFGDYRR 205 (753)
Q Consensus 178 ~dk~~r~gydd~~p~~d~~~~~~G~~~r 205 (753)
..++.+|||.|++.|..+|.+..||+++
T Consensus 13 L~~L~eMGF~D~~~N~~aL~~~~gnv~~ 40 (54)
T 2cp8_A 13 MAHLFEMGFCDRQLNLRLLKKHNYNILQ 40 (54)
T ss_dssp HHHHHHHTCCCHHHHHHHHTTTTTCHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHcCCCHHH
Confidence 4578899999999999999999999999
No 25
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=35.11 E-value=8.2 Score=35.53 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=24.2
Q ss_pred CCCCCcCCCCCCC-CeeEeceeeeeeccccccc
Q 004446 23 DNRRCINCNSLGT-QYVCTNFWTFVCTNCSGIH 54 (753)
Q Consensus 23 gNk~CADCGs~~P-~WaSvN~GVFVC~~CSGIH 54 (753)
+..+|.+||...- .|..-+|++-||..|....
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~ 36 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhcccc
Confidence 4458999998643 3345699999999998753
No 26
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=34.95 E-value=7.2 Score=37.40 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=21.4
Q ss_pred CCCCCCcCCCCCCCC-eeEeceeeeeeccccccc
Q 004446 22 QDNRRCINCNSLGTQ-YVCTNFWTFVCTNCSGIH 54 (753)
Q Consensus 22 pgNk~CADCGs~~P~-WaSvN~GVFVC~~CSGIH 54 (753)
..-.+|.+||.+=|. -.-.--++-+|+.|...|
T Consensus 109 g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~ 142 (151)
T 1tjl_A 109 EDFGYCESCGVEIGIRRLEARPTADLCIDCKTLA 142 (151)
T ss_dssp TCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHH
T ss_pred CCCceeCCCCCcchHHHHhcCCCcchhHHHHHHH
Confidence 345699999986321 112233567899998765
No 27
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=31.56 E-value=2.5 Score=32.90 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=24.6
Q ss_pred CcccccCccCCCCCCchhhhcccCCccc
Q 004446 178 DDKNSRYGYDERSPGNEQENRQFGDYRR 205 (753)
Q Consensus 178 ~dk~~r~gydd~~p~~d~~~~~~G~~~r 205 (753)
..++.+|||.|+..+..+|...+||+.+
T Consensus 11 i~~L~~MGF~d~~~~~~AL~~~~gnv~~ 38 (46)
T 2bwb_A 11 LRQLNDMGFFDFDRNVAALRRSGGSVQG 38 (46)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHhCCCHHH
Confidence 4677899999888889999999999987
No 28
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=30.08 E-value=14 Score=34.03 Aligned_cols=32 Identities=22% Similarity=0.635 Sum_probs=26.4
Q ss_pred CCCCcCCCCC-CCCeeEeceeeeeecccccccc
Q 004446 24 NRRCINCNSL-GTQYVCTNFWTFVCTNCSGIHR 55 (753)
Q Consensus 24 Nk~CADCGs~-~P~WaSvN~GVFVC~~CSGIHR 55 (753)
-+.|++|+.. -|.|=.-.-|-+||-.|.-.++
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~K 37 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHK 37 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHH
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhh
Confidence 4689999985 6999988889999999986543
No 29
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=29.68 E-value=18 Score=30.18 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=29.1
Q ss_pred CCCCCCcCCCCC-CCCeeEeceeeeeecccccccccC
Q 004446 22 QDNRRCINCNSL-GTQYVCTNFWTFVCTNCSGIHREF 57 (753)
Q Consensus 22 pgNk~CADCGs~-~P~WaSvN~GVFVC~~CSGIHR~L 57 (753)
.....|.+|+.. -|.|=.-..|..||-.|.-..+..
T Consensus 5 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~ 41 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLH 41 (63)
T ss_dssp CTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHH
T ss_pred CCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHc
Confidence 456799999986 589998888999999998655443
No 30
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=28.38 E-value=31 Score=27.90 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=22.3
Q ss_pred CCCCcCCCCCCCCeeEeceeeeeecccccccc
Q 004446 24 NRRCINCNSLGTQYVCTNFWTFVCTNCSGIHR 55 (753)
Q Consensus 24 Nk~CADCGs~~P~WaSvN~GVFVC~~CSGIHR 55 (753)
-.+|-+|+.....+ ...-|..||..|--|-.
T Consensus 11 ~~~Cp~C~~~~lv~-D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 11 RVTCPNHPDAILVE-DYRAGDMICPECGLVVG 41 (58)
T ss_dssp CCSBTTBSSSCCEE-CSSSCCEECTTTCCEEC
T ss_pred cccCcCCCCCceeE-eCCCCeEEeCCCCCEEe
Confidence 34799999865322 34669999999976643
No 31
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=23.98 E-value=3.7 Score=33.63 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=25.7
Q ss_pred CCcccccCccCCCCCCchhhhcccCCccc
Q 004446 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (753)
Q Consensus 177 s~dk~~r~gydd~~p~~d~~~~~~G~~~r 205 (753)
+..++.+|||.|++.+..+|...+||+.+
T Consensus 20 qi~~L~~MGF~d~~~~~~AL~~~~gnve~ 48 (58)
T 1wr1_B 20 QLRQLNDMGFFDFDRNVAALRRSGGSVQG 48 (58)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHhCCCHHH
Confidence 35778899999998889999999999988
No 32
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.73 E-value=3.6 Score=33.06 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=25.2
Q ss_pred CcccccCccCCCCCCchhhhcccCCccc
Q 004446 178 DDKNSRYGYDERSPGNEQENRQFGDYRR 205 (753)
Q Consensus 178 ~dk~~r~gydd~~p~~d~~~~~~G~~~r 205 (753)
..++.+|||.|+..+..+|...+||+.+
T Consensus 13 l~~L~~MGF~d~~~n~~AL~~~~Gdv~~ 40 (54)
T 2dah_A 13 LEQLRSMGFLNREANLQALIATGGDVDA 40 (54)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHcCCCHHH
Confidence 4678899999988889999999999998
No 33
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=23.54 E-value=25 Score=32.71 Aligned_cols=41 Identities=15% Similarity=0.377 Sum_probs=29.4
Q ss_pred HHHHHHHH-HccCCCCCCcCCCCCCCCeeEeceeeeeecccccc
Q 004446 11 NERIIRGL-LKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGI 53 (753)
Q Consensus 11 nekiLr~L-lk~pgNk~CADCGs~~P~WaSvN~GVFVC~~CSGI 53 (753)
.++.++++ ......-.|..||....... ..||+.|..|--+
T Consensus 46 lRK~vkkiE~~q~akytCPfCGk~~vKR~--avGIW~C~~Cgk~ 87 (116)
T 3cc2_Z 46 SRRRVAEIESEMNEDHACPNCGEDRVDRQ--GTGIWQCSYCDYK 87 (116)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEEEEEE--ETTEEEETTTCCE
T ss_pred HHHHHHHHHHHhccCCcCCCCCCceeEec--CceeEECCCCCCE
Confidence 45566666 55667779999998554444 4599999999754
No 34
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.29 E-value=4.2 Score=34.40 Aligned_cols=29 Identities=10% Similarity=0.001 Sum_probs=26.5
Q ss_pred CCcccccCccCCCCCCchhhhcccCCccc
Q 004446 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (753)
Q Consensus 177 s~dk~~r~gydd~~p~~d~~~~~~G~~~r 205 (753)
...++.+|||.|++.+..+|...+||+.+
T Consensus 22 ql~qL~~MGF~d~~an~~AL~at~Gnve~ 50 (67)
T 2dna_A 22 EMECLQAMGFVNYNANLQALIATDGDTNA 50 (67)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCCCHHH
Confidence 45788899999999999999999999999
No 35
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=23.14 E-value=34 Score=36.23 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=23.4
Q ss_pred CCCcCCCCCCCCe-eEeceeeeeecccccccc
Q 004446 25 RRCINCNSLGTQY-VCTNFWTFVCTNCSGIHR 55 (753)
Q Consensus 25 k~CADCGs~~P~W-aSvN~GVFVC~~CSGIHR 55 (753)
..|-+|+...|.- ....-|..||..|.-|..
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 4799999975432 245679999999998764
No 36
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=23.13 E-value=28 Score=30.41 Aligned_cols=41 Identities=15% Similarity=0.386 Sum_probs=28.9
Q ss_pred HHHHHHHH-HccCCCCCCcCCCCCCCCeeEeceeeeeecccccc
Q 004446 11 NERIIRGL-LKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGI 53 (753)
Q Consensus 11 nekiLr~L-lk~pgNk~CADCGs~~P~WaSvN~GVFVC~~CSGI 53 (753)
.++.+++| +.....-.|..||....- ....|++.|..|-..
T Consensus 13 lRk~vk~ie~~q~~~y~Cp~CG~~~v~--r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 13 SRRRVAEIESEMNEDHACPNCGEDRVD--RQGTGIWQCSYCDYK 54 (83)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEEEE--EEETTEEEETTTCCE
T ss_pred HHHHHHHHHHhccccCcCCCCCCccee--ccCCCeEECCCCCCE
Confidence 45566666 556667799999984332 344789999999864
No 37
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.04 E-value=4.4 Score=34.80 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=26.0
Q ss_pred CCcccccCccCCCCCCchhhhcccCCccc
Q 004446 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (753)
Q Consensus 177 s~dk~~r~gydd~~p~~d~~~~~~G~~~r 205 (753)
+..++.+|||.|++.+..+|...+||+.|
T Consensus 32 qi~qL~eMGF~dr~~~~~AL~~t~Gnve~ 60 (74)
T 1vej_A 32 ELEELKALGFANRDANLQALVATDGDIHA 60 (74)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHhCCCHHH
Confidence 35788899999988899999999999998
No 38
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=21.24 E-value=6.9 Score=35.85 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=26.2
Q ss_pred CCcccccCccCCCCCCchhhhcccCCccc
Q 004446 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (753)
Q Consensus 177 s~dk~~r~gydd~~p~~d~~~~~~G~~~r 205 (753)
+..++.+|||.|++.+..+|...+||+.+
T Consensus 69 qL~qL~eMGF~d~~~ni~AL~~t~Gdve~ 97 (108)
T 2cwb_A 69 QLQQLRDMGIQDDELSLRALQATGGDIQA 97 (108)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCCCHHH
Confidence 45788999999988999999999999988
No 39
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=20.40 E-value=69 Score=25.23 Aligned_cols=43 Identities=19% Similarity=0.396 Sum_probs=30.1
Q ss_pred CCCCCCcCCCCCCCCeeEeceeeeeecccc--cccccCCcceeeecc
Q 004446 22 QDNRRCINCNSLGTQYVCTNFWTFVCTNCS--GIHREFTHRVKSVSM 66 (753)
Q Consensus 22 pgNk~CADCGs~~P~WaSvN~GVFVC~~CS--GIHR~LGHRVKSlsL 66 (753)
.....|..-....-.+.|.+=...||..|. +-|| +|+|..|.-
T Consensus 6 ~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~--~H~~~~l~~ 50 (64)
T 2d8u_A 6 SGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK--ACEVAPLQS 50 (64)
T ss_dssp CCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT--SSCEECTTT
T ss_pred CCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC--CCCeeCHHH
Confidence 344567666344567778888899999996 5787 577776653
Done!