BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004448
(753 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGB|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 972
Score = 1338 bits (3462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 633/735 (86%), Positives = 687/735 (93%)
Query: 6 LEKMASIDAQLRLLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQECYELSA 65
LEK+ASIDAQLRLL P KVSEDDKL+EYDALLLD+FLDILQDLHGED++E VQECYELSA
Sbjct: 12 LEKLASIDAQLRLLVPGKVSEDDKLIEYDALLLDKFLDILQDLHGEDLKEAVQECYELSA 71
Query: 66 EYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRRIKLKKGD 125
EYEGK D +KLEELG+VLTSLDPGDSIV+ K+FSHMLNLANLAEEVQIAYRRRIKLK+GD
Sbjct: 72 EYEGKHDPKKLEELGSVLTSLDPGDSIVIAKAFSHMLNLANLAEEVQIAYRRRIKLKRGD 131
Query: 126 FVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKH 185
F DE +ATTESDIEET K+LV++L KSPEEVFDALKNQTVDLV TAHPTQSVRRSLLQKH
Sbjct: 132 FADEANATTESDIEETFKKLVLKLNKSPEEVFDALKNQTVDLVLTAHPTQSVRRSLLQKH 191
Query: 186 GRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHE 245
GRIRNCL QLYAKDITPDDKQELDEAL REIQAAFRTDEIRR+PPTPQDEMRAGMSYFHE
Sbjct: 192 GRIRNCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHE 251
Query: 246 TIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLL 305
TIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVT EVTRDVCLL
Sbjct: 252 TIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLL 311
Query: 306 ARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHRSSKRDAKHYIEFWKQIPPNEPY 365
ARMMA+N+YFSQIEDLMFE+SMWRCN ELR RA+ L+R+++RD KHYIEFWKQ+PP EPY
Sbjct: 312 ARMMASNMYFSQIEDLMFEMSMWRCNSELRVRAEELYRTARRDVKHYIEFWKQVPPTEPY 371
Query: 366 RVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCACGDRPI 425
RVILGDVRDKLYNTRER+R LLA+GISDIPE+ YT+VEQFLEPLELCYRSLC CGDR I
Sbjct: 372 RVILGDVRDKLYNTRERSRHLLAHGISDIPEEAVYTNVEQFLEPLELCYRSLCDCGDRVI 431
Query: 426 ADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLL 485
ADGSLLDFLRQVSTFGLSLV+LDIRQES+RHTDV+DAIT+HL IGSYREWSEEKRQEWLL
Sbjct: 432 ADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTDVLDAITQHLEIGSYREWSEEKRQEWLL 491
Query: 486 SELRGKRPLFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQR 545
+EL GKRPLFGSDLPKTEE+ DVLDTF+V++ELP+D FGAYIISMAT+PSDVLAVELLQR
Sbjct: 492 AELSGKRPLFGSDLPKTEEVKDVLDTFNVLAELPSDCFGAYIISMATSPSDVLAVELLQR 551
Query: 546 ECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRL 605
EC VK PLRVVPLFEKLADLEAAPA++ARLFSIDWYRNRI GKQEVMIGYSDSGKDAGR
Sbjct: 552 ECHVKHPLRVVPLFEKLADLEAAPAAMARLFSIDWYRNRIDGKQEVMIGYSDSGKDAGRF 611
Query: 606 SAAWQLYKTQEELVKVAKQYGVKLTMFHXXXXXXXXXXXPTHLAILSQPPDTIHGSLRVT 665
SAAWQLYK QEE++KVAK++GVKL +FH PTHLAILSQPPDTIHGSLRVT
Sbjct: 612 SAAWQLYKAQEEIIKVAKEFGVKLVIFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVT 671
Query: 666 VQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSI 725
VQGEVIEQSFGEEHLCFRTLQRF AATLEHGM+PP+SP+PEWR LMD+MAV+AT+EYRSI
Sbjct: 672 VQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRELMDQMAVVATEEYRSI 731
Query: 726 VFQEPRFVEYFRLVS 740
VF+EPRFVEYFRL +
Sbjct: 732 VFKEPRFVEYFRLAT 746
>pdb|3ZGE|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGE|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 990
Score = 1299 bits (3361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 613/740 (82%), Positives = 677/740 (91%)
Query: 1 MAARNLEKMASIDAQLRLLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQEC 60
MA RN+EK+ASIDAQLRLL P KVSEDDKLVEYDALLLD+FLDILQDLHGED++E VQ+C
Sbjct: 25 MANRNVEKLASIDAQLRLLVPGKVSEDDKLVEYDALLLDKFLDILQDLHGEDLKEAVQQC 84
Query: 61 YELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRRIK 120
YELSAEYEGK D +KLEELG++LTSLD GDSIV+ K+FSHMLNLANLAEE+QIAYRRRIK
Sbjct: 85 YELSAEYEGKHDPKKLEELGSLLTSLDTGDSIVIAKAFSHMLNLANLAEELQIAYRRRIK 144
Query: 121 LKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRS 180
LK GDF DE +ATTESDIEET KRLV +L KSPEEVFDALKNQTV+LV TAHPTQSVRRS
Sbjct: 145 LKSGDFADEANATTESDIEETFKRLVHKLNKSPEEVFDALKNQTVELVLTAHPTQSVRRS 204
Query: 181 LLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGM 240
LLQKHGRIRNCL QLYAKDITPDDKQELDEAL REIQAAFRTDEIRR+PPTPQDEMRAGM
Sbjct: 205 LLQKHGRIRNCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIRRTPPTPQDEMRAGM 264
Query: 241 SYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTR 300
SYFHETIWKGVPKFLRRVDTALKNIGINER PYNAPLIQFSSWMGGDRDGNPRVT EVTR
Sbjct: 265 SYFHETIWKGVPKFLRRVDTALKNIGINERFPYNAPLIQFSSWMGGDRDGNPRVTPEVTR 324
Query: 301 DVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHRSSKRDAKHYIEFWKQIP 360
DVCLLARMM +N+YFSQIEDLM E+SMWRCN ELR RA+ L+R++++D KHYIEFWK+IP
Sbjct: 325 DVCLLARMMTSNMYFSQIEDLMIEMSMWRCNSELRVRAEELYRTARKDVKHYIEFWKRIP 384
Query: 361 PNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCAC 420
PN+PYRVILGDVRDKLYNTRER+R LL +G SDIP++ YT+VEQ LEPLELCYRSLC C
Sbjct: 385 PNQPYRVILGDVRDKLYNTRERSRHLLVDGKSDIPDEAVYTNVEQLLEPLELCYRSLCDC 444
Query: 421 GDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKR 480
GD IADGSLLDFLRQVSTFGLSLV+LDIRQES+RHT+V+DAIT+HLGIGSYREWSEEKR
Sbjct: 445 GDHVIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTEVLDAITQHLGIGSYREWSEEKR 504
Query: 481 QEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAV 540
QEWLL+EL GKRPL G DLPKTEE+ D LDTF V++ELP+D FGAYIISMAT+ SDVLAV
Sbjct: 505 QEWLLAELSGKRPLIGPDLPKTEEVKDCLDTFKVLAELPSDCFGAYIISMATSTSDVLAV 564
Query: 541 ELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGK 600
ELLQRE +K PLRVVPLFEKLADLEAAPA++ RLFS+DWYRNRI GKQEVMIGYSDSGK
Sbjct: 565 ELLQREYHIKHPLRVVPLFEKLADLEAAPAAMTRLFSMDWYRNRIDGKQEVMIGYSDSGK 624
Query: 601 DAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHXXXXXXXXXXXPTHLAILSQPPDTIHG 660
DAGR SAAWQLYKTQE++VK+AK++GVKL +FH PTHLA+LSQPPDTI+G
Sbjct: 625 DAGRFSAAWQLYKTQEQIVKIAKEFGVKLVIFHGRGGTVGRGGGPTHLALLSQPPDTING 684
Query: 661 SLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATK 720
SLRVTVQGEVIEQSFGEEHLCFRTLQRF AATLEHGM+PP+SP+PEWR LMD+MAV+AT+
Sbjct: 685 SLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRELMDQMAVVATE 744
Query: 721 EYRSIVFQEPRFVEYFRLVS 740
EYRS+VF+EPRFVEYFRL +
Sbjct: 745 EYRSVVFKEPRFVEYFRLAT 764
>pdb|1JQO|A Chain A, Crystal Structure Of C4-Form Phosphoenolpyruvate
Carboxylase From Maize
pdb|1JQO|B Chain B, Crystal Structure Of C4-Form Phosphoenolpyruvate
Carboxylase From Maize
Length = 970
Score = 1206 bits (3121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/733 (79%), Positives = 644/733 (87%), Gaps = 2/733 (0%)
Query: 7 EKMASIDAQLRLLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQECYELSAE 66
EK SIDAQLR L P KVSEDDKL+EYDALL+DRFL+ILQDLHG +RE VQECYE+SA+
Sbjct: 11 EKHHSIDAQLRQLVPGKVSEDDKLIEYDALLVDRFLNILQDLHGPSLREFVQECYEVSAD 70
Query: 67 YEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRR-IKLKKGD 125
YEGK D+ KL ELG LT L P D+I+V S HMLNLANLAEEVQIA+RRR KLKKG
Sbjct: 71 YEGKGDTTKLGELGAKLTGLAPADAILVASSILHMLNLANLAEEVQIAHRRRNSKLKKGG 130
Query: 126 FVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKH 185
F DE SATTESDIEETLKRLV ++ KSPEEVF+ALKNQTVDLVFTAHPTQS RRSLLQK+
Sbjct: 131 FADEGSATTESDIEETLKRLVSEVGKSPEEVFEALKNQTVDLVFTAHPTQSARRSLLQKN 190
Query: 186 GRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHE 245
RIRNCLTQL AKDIT DDKQELDEALQREIQAAFRTDEIRR+ PTPQ EMR GMSY HE
Sbjct: 191 ARIRNCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGMSYIHE 250
Query: 246 TIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLL 305
T+WKGVPKFLRRVDTALKNIGINER+PYN LI+FSSWMGGDRDGNPRVT EVTRDVCLL
Sbjct: 251 TVWKGVPKFLRRVDTALKNIGINERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLL 310
Query: 306 ARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHRSS-KRDAKHYIEFWKQIPPNEP 364
ARMMAANLY QIE+LMFELSMWRCNDELR RA+ LH SS + K+YIEFWKQIPPNEP
Sbjct: 311 ARMMAANLYIDQIEELMFELSMWRCNDELRVRAEELHSSSGSKVTKYYIEFWKQIPPNEP 370
Query: 365 YRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCACGDRP 424
YRVILG VRDKLYNTRERAR LLA+G+S+I + ++T +E+FLEPLELCY+SLC CGD+
Sbjct: 371 YRVILGHVRDKLYNTRERARHLLASGVSEISAESSFTSIEEFLEPLELCYKSLCDCGDKA 430
Query: 425 IADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWL 484
IADGSLLD LRQV TFGLSLV+LDIRQESERHTDVIDAIT HLGIGSYREW E+KRQEWL
Sbjct: 431 IADGSLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAITTHLGIGSYREWPEDKRQEWL 490
Query: 485 LSELRGKRPLFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQ 544
LSELRGKRPL DLP+T+EIADV+ FHV++ELP DSFG YIISMATAPSDVLAVELLQ
Sbjct: 491 LSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPPDSFGPYIISMATAPSDVLAVELLQ 550
Query: 545 RECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGR 604
REC V+QPL VVPLFE+LADL++APASV RLFS+DWY +RI GKQ+VM+GYSDSGKDAGR
Sbjct: 551 RECGVRQPLPVVPLFERLADLQSAPASVERLFSVDWYMDRIKGKQQVMVGYSDSGKDAGR 610
Query: 605 LSAAWQLYKTQEELVKVAKQYGVKLTMFHXXXXXXXXXXXPTHLAILSQPPDTIHGSLRV 664
LSAAWQLY+ QEE+ +VAK+YGVKLT+FH PTHLAILSQPPDTI+GS+RV
Sbjct: 611 LSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGRGGGPTHLAILSQPPDTINGSIRV 670
Query: 665 TVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRS 724
TVQGEVIE FGEEHLCF+TLQRF+AATLEHGMHPPVSPKPEWR LMDEMAV+AT+EYRS
Sbjct: 671 TVQGEVIEFCFGEEHLCFQTLQRFTAATLEHGMHPPVSPKPEWRKLMDEMAVVATEEYRS 730
Query: 725 IVFQEPRFVEYFR 737
+V +E RFVEYFR
Sbjct: 731 VVVKEARFVEYFR 743
>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate
Carboxylase
pdb|1JQN|A Chain A, Crystal Structure Of E.Coli Phosphoenolpyruvate
Carboxylase In Complex With Mn2+ And Dcdp
pdb|1FIY|A Chain A, Three-Dimensional Structure Of Phosphoenolpyruvate
Carboxylase From Escherichia Coli At 2.8 A Resolution
Length = 883
Score = 486 bits (1250), Expect = e-137, Method: Compositional matrix adjust.
Identities = 282/713 (39%), Positives = 408/713 (57%), Gaps = 40/713 (5%)
Query: 32 EYDAL-----LLDRFL-DILQDLHGEDIRETVQECYELSAEYEGKRDSQKLEELGNVLTS 85
+Y AL +L + L + ++D GE I E V+ +LS D+ + +EL L +
Sbjct: 4 QYSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKSSRAGNDANR-QELLTTLQN 62
Query: 86 LDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRRIKLKKGDFVDENSATTESDIEETLKRL 145
L + + V ++FS LNLAN AE+ KG+ +A+ I TL++L
Sbjct: 63 LSNDELLPVARAFSQFLNLANTAEQYHSIS------PKGE-----AASNPEVIARTLRKL 111
Query: 146 VVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDK 205
Q + S + + A+++ +++LV TAHPT+ RR+L+ K + CL QL KDI +
Sbjct: 112 KNQPELSEDTIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQLDNKDIADYEH 171
Query: 206 QELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALK-N 264
+L L++ I ++ TDEIR+ P+P DE + G + ++W+GVP +LR ++ L+ N
Sbjct: 172 NQLMRRLRQLIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVPNYLRELNEQLEEN 231
Query: 265 IGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFE 324
+G ++P ++F+SWMGGDRDGNP VT+++TR V LL+R A +L+ I+ L+ E
Sbjct: 232 LGY--KLPVEFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSE 289
Query: 325 LSMWRCNDELRARADGLHRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERAR 384
LSM EL A G ++ EPYR ++ ++R +L T+
Sbjct: 290 LSMVEATPELLALV-GEEGAA-----------------EPYRYLMKNLRSRLMATQAWLE 331
Query: 385 QLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSL 444
L PE + T E+ EPL CY+SL ACG IA+G LLD LR+V FG+ L
Sbjct: 332 ARLKGEELPKPEGL-LTQNEELWEPLYACYQSLQACGMGIIANGDLLDTLRRVKCFGVPL 390
Query: 445 VRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRGKRPLFGSDLPKTEE 504
VR+DIRQES RHT+ + +T++LGIG Y WSE +Q +L+ EL KRPL + + E
Sbjct: 391 VRIDIRQESTRHTEALGELTRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPSAE 450
Query: 505 IADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLAD 564
+VLDT VI+E P S AY+ISMA PSDVLAV LL +E + + V PLFE L D
Sbjct: 451 TREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLLLKEAGIGFAMPVAPLFETLDD 510
Query: 565 LEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQ 624
L A + +L +IDWYR I GKQ VMIGYSDS KDAG ++A+W Y+ Q+ L+K ++
Sbjct: 511 LNNANDVMTQLLNIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEK 570
Query: 625 YGVKLTMFHXXXXXXXXXXXPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRT 684
G++LT+FH P H A+LSQPP ++ G LRVT QGE+I +G + +
Sbjct: 571 AGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSS 630
Query: 685 LQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSIVFQEPRFVEYFR 737
L ++ A LE + PP PK WR +MDE++VI+ YR V + FV YFR
Sbjct: 631 LSLYTGAILEANLLPPPEPKESWRRIMDELSVISCDVYRGYVRENKDFVPYFR 683
>pdb|3EJK|A Chain A, Crystal Structure Of Dtdp Sugar Isomerase (yp_390184.1)
From Desulfovibrio Desulfuricans G20 At 1.95 A
Resolution
Length = 174
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 266 GINERVPYNAPLIQFSSWMGGDRDGNP 292
G +ER P +AP I F SW G D G P
Sbjct: 147 GESERAPQDAPFIPF-SWAGADLSGTP 172
>pdb|3E54|A Chain A, Archaeal Intron-Encoded Homing Endonuclease I-Vdi141i
Complexed With Dna
pdb|3E54|B Chain B, Archaeal Intron-Encoded Homing Endonuclease I-Vdi141i
Complexed With Dna
Length = 169
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
Query: 427 DGSLLDFLRQVSTFGLSL---------VRLD-IRQESERHTDVIDAITKHLGIGSYRE 474
+G +L F+ +F +S+ VRLD + ++++ +V++AI +HLGIG E
Sbjct: 9 EGYILGFIEAEGSFSVSIKFQRDVFGGVRLDPVFSITQKNREVLEAIKEHLGIGRIME 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,479,784
Number of Sequences: 62578
Number of extensions: 867420
Number of successful extensions: 2369
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2357
Number of HSP's gapped (non-prelim): 17
length of query: 753
length of database: 14,973,337
effective HSP length: 106
effective length of query: 647
effective length of database: 8,340,069
effective search space: 5396024643
effective search space used: 5396024643
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)