Query 004448
Match_columns 753
No_of_seqs 130 out of 814
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 23:36:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2352 Ppc Phosphoenolpyruvat 100.0 8E-198 2E-202 1661.2 71.2 698 26-748 5-719 (910)
2 PRK00009 phosphoenolpyruvate c 100.0 3E-184 7E-189 1621.7 79.0 700 25-747 4-720 (911)
3 PTZ00398 phosphoenolpyruvate c 100.0 7E-184 1E-188 1627.1 80.6 714 26-747 46-778 (974)
4 PF00311 PEPcase: Phosphoenolp 100.0 2E-168 4E-173 1476.7 48.9 579 162-747 1-598 (794)
5 PRK13655 phosphoenolpyruvate c 100.0 1.2E-59 2.5E-64 522.7 22.6 225 510-747 109-347 (494)
6 TIGR02751 PEPCase_arch phospho 100.0 4.5E-48 9.8E-53 430.6 21.7 194 522-734 122-342 (506)
7 PF14010 PEPcase_2: Phosphoeno 98.4 9.1E-06 2E-10 92.1 16.8 193 520-728 118-334 (491)
8 COG1892 Phosphoenolpyruvate ca 96.7 0.0044 9.5E-08 69.3 8.2 151 524-687 126-299 (488)
9 PRK10558 alpha-dehydro-beta-de 96.3 0.011 2.4E-07 63.0 7.6 159 433-632 32-216 (256)
10 TIGR03239 GarL 2-dehydro-3-deo 96.1 0.018 3.9E-07 61.1 8.1 159 433-632 25-209 (249)
11 PF03328 HpcH_HpaI: HpcH/HpaI 96.1 0.027 5.8E-07 58.4 9.1 95 523-628 85-186 (221)
12 TIGR01064 pyruv_kin pyruvate k 94.6 0.15 3.3E-06 59.0 9.7 149 512-690 177-332 (473)
13 PRK08187 pyruvate kinase; Vali 91.5 0.53 1.2E-05 54.7 8.0 112 523-646 325-438 (493)
14 PRK05826 pyruvate kinase; Prov 91.2 0.71 1.5E-05 53.4 8.5 91 523-631 187-277 (465)
15 PLN02623 pyruvate kinase 91.0 0.8 1.7E-05 54.1 8.8 90 523-631 292-381 (581)
16 PRK09206 pyruvate kinase; Prov 90.7 0.84 1.8E-05 52.9 8.6 89 525-631 188-276 (470)
17 PTZ00300 pyruvate kinase; Prov 90.3 1 2.3E-05 51.9 8.8 88 525-631 163-250 (454)
18 TIGR01588 citE citrate lyase, 89.5 0.96 2.1E-05 49.1 7.4 97 523-629 86-189 (288)
19 TIGR02311 HpaI 2,4-dihydroxyhe 88.5 1.5 3.3E-05 46.6 7.9 97 524-631 86-209 (249)
20 cd00288 Pyruvate_Kinase Pyruva 88.1 1.8 4E-05 50.3 8.8 90 523-631 188-277 (480)
21 PRK06354 pyruvate kinase; Prov 87.3 1.8 3.9E-05 51.6 8.2 90 523-631 192-282 (590)
22 PRK06247 pyruvate kinase; Prov 87.1 1.9 4.1E-05 50.0 8.1 87 523-631 187-273 (476)
23 PRK10128 2-keto-3-deoxy-L-rham 82.0 5.1 0.00011 43.2 8.1 71 551-632 144-216 (267)
24 PRK06739 pyruvate kinase; Vali 71.6 19 0.00041 40.4 9.2 91 523-631 179-269 (352)
25 PF00224 PK: Pyruvate kinase, 70.4 9.9 0.00021 42.5 6.7 90 523-631 190-279 (348)
26 PF02585 PIG-L: GlcNAc-PI de-N 63.7 19 0.00042 33.5 6.3 54 587-650 67-120 (128)
27 COG2301 CitE Citrate lyase bet 63.5 10 0.00022 41.3 4.8 100 522-634 80-184 (283)
28 cd00480 malate_synt Malate syn 62.4 17 0.00038 42.7 6.8 109 511-629 172-303 (511)
29 PLN02461 Probable pyruvate kin 61.4 33 0.00072 40.4 8.8 90 523-631 208-297 (511)
30 PRK14725 pyruvate kinase; Prov 60.0 38 0.00082 40.6 9.0 109 525-646 447-555 (608)
31 PTZ00066 pyruvate kinase; Prov 59.4 32 0.0007 40.5 8.3 90 523-631 224-313 (513)
32 PF02526 GBP_repeat: Glycophor 57.9 7.9 0.00017 28.6 1.9 18 569-586 7-24 (38)
33 PLN02765 pyruvate kinase 57.9 41 0.0009 39.7 8.8 88 525-630 223-310 (526)
34 PRK09255 malate synthase; Vali 52.8 43 0.00092 39.7 7.8 95 525-628 208-323 (531)
35 cd00727 malate_synt_A Malate s 50.8 25 0.00055 41.3 5.6 95 525-628 187-302 (511)
36 KOG3831 Uncharacterized conser 49.8 14 0.00031 36.2 2.8 48 560-621 61-108 (196)
37 TIGR01344 malate_syn_A malate 47.9 29 0.00063 40.8 5.5 96 525-629 188-304 (511)
38 PF12897 Aminotran_MocR: Alani 47.2 15 0.00032 41.7 2.8 64 522-585 343-422 (425)
39 PLN02762 pyruvate kinase compl 46.8 90 0.0019 36.9 9.2 92 523-631 217-308 (509)
40 COG3294 HD supefamily hydrolas 42.2 27 0.00058 36.9 3.6 123 557-695 12-158 (269)
41 TIGR03191 benz_CoA_bzdO benzoy 41.7 1.9E+02 0.0041 33.4 10.8 113 174-292 153-271 (430)
42 PRK06464 phosphoenolpyruvate s 40.8 72 0.0016 39.7 7.7 95 526-634 640-749 (795)
43 TIGR01417 PTS_I_fam phosphoeno 38.3 82 0.0018 37.7 7.4 101 525-638 386-507 (565)
44 TIGR01418 PEP_synth phosphoeno 36.1 1E+02 0.0022 38.4 7.9 95 526-634 633-742 (782)
45 COG3840 ThiQ ABC-type thiamine 35.2 97 0.0021 32.2 6.2 80 456-539 106-195 (231)
46 PF01373 Glyco_hydro_14: Glyco 32.5 45 0.00098 38.1 3.8 73 552-641 5-84 (402)
47 PF12133 Sars6: Open reading f 31.4 12 0.00027 30.5 -0.6 45 433-482 15-59 (62)
48 PRK10563 6-phosphogluconate ph 27.7 5.8E+02 0.013 25.7 10.8 78 523-633 102-186 (221)
49 PF08671 SinI: Anti-repressor 26.1 92 0.002 22.6 3.1 24 138-162 5-28 (30)
50 PLN00197 beta-amylase; Provisi 24.2 72 0.0016 37.8 3.6 32 608-642 162-196 (573)
51 PRK10415 tRNA-dihydrouridine s 23.8 1E+03 0.022 26.3 14.3 67 617-684 153-237 (321)
52 TIGR01766 tspaseT_teng_C trans 23.7 2.5E+02 0.0053 24.1 6.1 47 589-635 25-79 (82)
53 PLN02803 beta-amylase 23.5 76 0.0016 37.5 3.6 35 607-644 141-178 (548)
54 PRK11337 DNA-binding transcrip 22.3 9.4E+02 0.02 25.6 11.6 40 588-638 187-226 (292)
55 PLN02801 beta-amylase 22.0 84 0.0018 36.9 3.6 34 607-643 71-107 (517)
56 TIGR01579 MiaB-like-C MiaB-lik 21.4 1.2E+03 0.026 26.4 12.8 89 506-594 273-379 (414)
57 PLN02905 beta-amylase 21.0 90 0.0019 37.6 3.5 34 607-643 320-356 (702)
58 PF12764 Gly-rich_Ago1: Glycin 20.5 51 0.0011 30.5 1.1 7 633-639 9-15 (104)
59 PLN02705 beta-amylase 20.4 94 0.002 37.3 3.5 32 607-641 302-336 (681)
60 PF04852 DUF640: Protein of un 20.3 2E+02 0.0043 28.0 5.0 41 248-320 91-131 (132)
61 PLN02626 malate synthase 20.2 2.7E+02 0.0058 33.3 7.2 94 526-628 215-329 (551)
No 1
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=8e-198 Score=1661.16 Aligned_cols=698 Identities=41% Similarity=0.662 Sum_probs=654.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHhHhhhcCCCchhHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Q 004448 26 EDDKLVEYDALLLDRFLDILQDLHGEDIRETVQECYELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLA 105 (753)
Q Consensus 26 ~~~~l~~~~~~L~~lL~evl~e~~G~~~~~~ve~ir~ls~~~~~~~~~~~~~~L~~~l~~L~~~~~~~vaRAFs~~f~L~ 105 (753)
++..+++||++||++||++|+++.|+++|++||+||+++++.|.+ +.+++.+|.+.+.+|+.+++..++||||+|++|+
T Consensus 5 ~~~~lr~~v~~Lg~lLge~i~e~~g~~~~e~ve~ir~~s~~~r~~-~~~~~~~L~~~l~~Ls~~~~~~vaRaFs~f~~L~ 83 (910)
T COG2352 5 KYSALRSDVSMLGRLLGETIREAEGEAILELVETIRKLSKESRAG-DQADRQELEATLANLSNDEAIPVARAFSQFLLLA 83 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHcCCCHhhhhHHHHHHHHHhhhh
Confidence 567899999999999999999999999999999999999988876 5567899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCCCCCcchHHHHHHHHHHHcCCCHHHHHHHhccCceeEeeccCCCccchhhHHHHH
Q 004448 106 NLAEEVQIAYRRRIKLKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKH 185 (753)
Q Consensus 106 NiAEe~~r~r~~r~~~~~~~~~~~~~~~~~~s~~~~l~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~Rrtvl~~~ 185 (753)
||||++|+.|+++.+...+. ..+||..++++|+ +.|++++++.+.|+++.|+|||||||||++||||++++
T Consensus 84 NiaEd~~~~~r~~~~~~~~~--------~~~sL~~~~~~Lk-~~~~~~~~v~~~l~~l~v~lVLTAHPTEv~RrTv~~~~ 154 (910)
T COG2352 84 NIAEDYHRIRRRQIHEAAGD--------SDGSLAATLKKLK-EQGLSPETVARALENLNVELVLTAHPTEVQRRTVIDKQ 154 (910)
T ss_pred hHHHHhhhHhhhhhhhccCC--------CcchHHHHHHHHH-hcCCCHHHHHHHHHhCceeEEEecCchHHHHHHHHHHH
Confidence 99999999998775554443 2489999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhcccccccCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 004448 186 GRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNI 265 (753)
Q Consensus 186 ~~I~~~L~~~~~~~~t~~e~~~~~~~L~~~i~~LW~T~~ir~~KPtv~DE~~~~l~y~~~~l~~avP~l~~~l~~al~~~ 265 (753)
++|.++|.+++...+++. ++.++++|++.|..+|||+++|..||||.|||+||++||+++||++||++|++++.++.++
T Consensus 155 ~~I~~lL~~~~~~~~~~~-~~~~~~~L~~~I~~~W~TdeiR~~rptv~DEi~~gl~y~~~sl~~avP~l~r~~~~~~~~~ 233 (910)
T COG2352 155 REINRLLRKLDHADLSDE-RARIRRRLRRLIAQLWQTDEIRKLRPTVLDEIKNGLAYYENSLWQAVPKLLRELNEALQET 233 (910)
T ss_pred HHHHHHHHHhhcccchhH-HHHHHHHHHHHHHHHhhhhHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999987776666 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcC----ccCCHHHHHhHhhh
Q 004448 266 GINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSM----WRCNDELRARADGL 341 (753)
Q Consensus 266 ~~~~~~~~~~~~i~fgSWiGGDRDGNP~VT~~vT~~~~~~~r~~~l~~y~~~l~~L~~~LS~----~~~s~~l~~~~~~~ 341 (753)
++ ...|..++|++|||||||||||||||||+||++++..+|++++++|+++|.+|+.+||+ ++||++|.++++.-
T Consensus 234 ~~-~~~~~~~~p~~~gSWiGGDRDGNPfVTae~tr~~~~~~r~~~~~~Yl~~i~~L~~eLS~S~~~~~vs~el~ala~~~ 312 (910)
T COG2352 234 FG-ELLPVEAVPLRFGSWIGGDRDGNPFVTAETTRQALLLQRWKALDLYLKEIQKLYSELSMSTRLVKVSPELLALAGES 312 (910)
T ss_pred cc-cccCCCCCccccccCccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhcccCCHHHHHHHhcC
Confidence 75 34566678999999999999999999999999999999999999999999999999999 68999999988753
Q ss_pred hhcchhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCHHHhhHHHHHHHHHHHhcC
Q 004448 342 HRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCACG 421 (753)
Q Consensus 342 ~~~~~~~~~~~~~f~~~~~~~EPyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~Y~~~~ell~dL~~i~~sL~~~~ 421 (753)
.+ ... .+.+||||++|..|++||.+|...+.....+.. ......+|.+++||++||..|++||.+||
T Consensus 313 ~d----~~~--------~r~~EPYR~al~~i~~rL~~T~~~l~~~~~~~~-~~~~~~~y~~~~el~~dL~~i~~SL~~~G 379 (910)
T COG2352 313 QD----QSI--------RRADEPYRRALKYIRSRLMATQAYLDGLLAGEE-GVGPEPPYTSPEELLEDLYAIYQSLHACG 379 (910)
T ss_pred cc----ccc--------hhccccHHHHHHHHHHHHHHHHHHHhccccccc-cCCCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 22 111 245899999999999999999987765544322 12234589999999999999999999999
Q ss_pred CccchhhHHHHHHHHHHHhCCccccccccccchHHHHHHHHHHHHcCCC-CCCCCCHHHHHHHHHhhhcCCCCCCCCCCC
Q 004448 422 DRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIG-SYREWSEEKRQEWLLSELRGKRPLFGSDLP 500 (753)
Q Consensus 422 ~~~~a~~~L~~lir~v~~FGfhla~LDIRQ~S~~H~~av~el~~~~g~~-~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~ 500 (753)
++.+|+|.|.+++++|++|||||++|||||||++|+.||+||++++|++ +|.+|||++|++||.+||.++|||+++..+
T Consensus 380 ~~~la~g~L~~ll~~v~~FGf~L~~LDiRQ~S~~h~~avaEL~~~ag~~~dY~~lsE~~K~~~L~~EL~s~RPL~p~~~~ 459 (910)
T COG2352 380 MEILADGRLLDLLRRVEVFGFHLVSLDIRQESTRHEEAVAELLRYAGLGADYSSLSEEDKQAFLLRELSSRRPLLPPFWQ 459 (910)
T ss_pred CceeccchHHHHHHHHHhcCceeeccccccccchHHHHHHHHHHHccCCCChhhcCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCC----CCccCcEEecCCCCcccHHHHHHHHHHcCCC----CCCccccccCChHHHhchHHHH
Q 004448 501 KTEEIADVLDTFHVISELP----ADSFGAYIISMATAPSDVLAVELLQRECRVK----QPLRVVPLFEKLADLEAAPASV 572 (753)
Q Consensus 501 ~s~~~~~~l~~f~~i~~~~----~~a~g~yIISmt~s~sDvL~Vl~L~k~~gl~----~~l~VvPLFETi~DL~~a~~im 572 (753)
+|+.|+++|+||+++++++ +++|++||||||+++||||||++|+||+|+. .+++|||||||||||+||+.||
T Consensus 460 ~Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvPLFETieDL~na~~vm 539 (910)
T COG2352 460 PSEETREELATFRVAAEAKDEFGEDAIGAYIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVPLFETIEDLDNAPDVM 539 (910)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCHHHHHHHHHHHHHhCCCCccCCccccccccccHHHHhccHHHH
Confidence 9999999999999999776 4679999999999999999999999999997 7899999999999999999999
Q ss_pred HHHhccHHHHHhhc---CceEEEEeecCCCcchhHHhHhHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcchhhh
Q 004448 573 ARLFSIDWYRNRIS---GKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLA 649 (753)
Q Consensus 573 ~~Ll~~p~yr~~l~---~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~fFHGRGGsvgRGGGP~~~a 649 (753)
++||++|+||..|+ |.||||||||||||||||++|||++|+||++|+++|+|+||+++|||||||||||||||+|.|
T Consensus 540 ~~ll~l~~yR~~l~~~~n~QEVMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~LrlFHGRGGtVGRGGGPa~~A 619 (910)
T COG2352 540 TQLLNLPLYRALLAGRGNVQEVMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELRLFHGRGGSVGRGGGPAYAA 619 (910)
T ss_pred HHHHcChHHHHHHcCCCCceEEEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceEEEEccCCCCCCCCCchHHHH
Confidence 99999999999995 489999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCC-CCCChHHHHHHHHHHHHHHHHHHhhhhc
Q 004448 650 ILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPP-VSPKPEWRALMDEMAVIATKEYRSIVFQ 728 (753)
Q Consensus 650 ilaqP~gsv~g~iR~TeQGEvI~~kYg~~~~A~r~LE~~~~a~l~~s~~~~-~~~~~~~~~~me~ls~~s~~~Yr~Lv~~ 728 (753)
|+|||+|||+|+||+|||||||..|||+|++|.||||++++|+|++++.++ ++|+++|+++||+||+.||.+||.||++
T Consensus 620 ILsQP~gsv~g~iRiTEQGE~I~~Kyg~p~~A~~nLe~l~sAvLeAsllp~~~dp~~~~~~iMd~ls~~S~~~YR~lV~~ 699 (910)
T COG2352 620 ILSQPPGSVKGRIRITEQGEMIAFKYGLPEVARRNLETLVSAVLEASLLPPKPDPKESWRAIMDELSDISCDAYRGLVRE 699 (910)
T ss_pred HhcCCCcccCCceEeehhHHHHHHhhCChHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999876 6778889999999999999999999999
Q ss_pred CCChhhhhhhcccccccchh
Q 004448 729 EPRFVEYFRLVSISPIHHHF 748 (753)
Q Consensus 729 ~p~F~~yF~~aTPi~~~~~~ 748 (753)
+|+|++||+++|||.|++.+
T Consensus 700 ~pdFvdyF~~~TPi~EIs~L 719 (910)
T COG2352 700 NPDFVDYFRQATPIQEISKL 719 (910)
T ss_pred CCcHHHHHHhcCcHHHHhcC
Confidence 99999999999999999875
No 2
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=100.00 E-value=3e-184 Score=1621.66 Aligned_cols=700 Identities=42% Similarity=0.686 Sum_probs=644.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHhHhhhcCCCchhHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Q 004448 25 SEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQECYELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNL 104 (753)
Q Consensus 25 ~~~~~l~~~~~~L~~lL~evl~e~~G~~~~~~ve~ir~ls~~~~~~~~~~~~~~L~~~l~~L~~~~~~~vaRAFs~~f~L 104 (753)
..+.+|++|+++||++||+||++++|++++++||+||.+++..+.+ ++...++|.+.+++|+++++..|+||||+||+|
T Consensus 4 ~~~~~Lr~dv~~Lg~lLg~vi~~~~g~~~~~~ve~ir~~~~~~r~~-~~~~~~~L~~~l~~L~~~e~~~v~raFs~~~~L 82 (911)
T PRK00009 4 EKDAPLREDVRLLGRLLGDTIREQEGDEVFDLVETIRKLSKSSRRG-DDAAREELLKLLKNLSNDELLPVARAFSQFLNL 82 (911)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhccc-cchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3466799999999999999999999999999999999999987654 344556899999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCCCCCCCCCcchHHHHHHHHHHHcCCCHHHHHHHhccCceeEeeccCCCccchhhHHHH
Q 004448 105 ANLAEEVQIAYRRRIKLKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQK 184 (753)
Q Consensus 105 ~NiAEe~~r~r~~r~~~~~~~~~~~~~~~~~~s~~~~l~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~Rrtvl~~ 184 (753)
+|||||+|++|++|.+...+. +.+|||..++.+|+ ++|++++++++.|+++.|+|||||||||++|||||++
T Consensus 83 ~NiAEe~~~~r~~r~~~~~~~-------~~~~sl~~~~~~l~-~~g~~~e~i~~~L~~~~i~pVlTAHPTE~~RrtvL~~ 154 (911)
T PRK00009 83 ANIAEDYHHIRRRREHASGSQ-------PQPGSLAETLRRLK-AAGVSPEELARALEELDIEPVLTAHPTEVQRRTLLDK 154 (911)
T ss_pred HHHHHHHHHHHHHHHhhccCC-------CCCCcHHHHHHHHH-HcCCCHHHHHHHHhhCcceeeeecCCcccchHHHHHH
Confidence 999999999998887654332 35789999999998 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhcccccccCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 004448 185 HGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKN 264 (753)
Q Consensus 185 ~~~I~~~L~~~~~~~~t~~e~~~~~~~L~~~i~~LW~T~~ir~~KPtv~DE~~~~l~y~~~~l~~avP~l~~~l~~al~~ 264 (753)
|++|+.+|.++++..+++.|+++++++|+++|++||||+++|++||||.||++||++||+++||++||.+|+++++++..
T Consensus 155 ~~~I~~~L~~~d~~~~t~~e~~~~~~~l~~~i~~LW~T~eiR~~KPtv~DE~~~gl~y~~~~l~~aiP~~~~~l~~al~~ 234 (911)
T PRK00009 155 QREIAALLRQLDDVDLTPRERAKIERRLRRLIAQLWQTDEIRQFRPTVVDEIKNGLAYYENSLWQAVPKLYRELEEALEE 234 (911)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhCcchhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcccccccCCCCCCCCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcC----ccCCHHHHHhHhh
Q 004448 265 IGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSM----WRCNDELRARADG 340 (753)
Q Consensus 265 ~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VT~~vT~~~~~~~r~~~l~~y~~~l~~L~~~LS~----~~~s~~l~~~~~~ 340 (753)
++ +...|..+++|+|||||||||||||||||+||++|+.++|+.++++|++++++|.++||+ .+||+++.++.+.
T Consensus 235 ~~-~~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~Y~~~l~~L~~~LS~S~~~~~~s~~l~~l~~~ 313 (911)
T PRK00009 235 HF-GLQLPLDAAPLRFGSWIGGDRDGNPNVTAEVTREVLLLQRWVALDLYLKELHALGSELSMSTRLVEVSPELRALAGA 313 (911)
T ss_pred hc-CccCCCCCceeeeccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCHHHHHHhhc
Confidence 86 344455568999999999999999999999999999999999999999999999999999 5899999886654
Q ss_pred hhhcchhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCHHHhhHHHHHHHHHHHhc
Q 004448 341 LHRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCAC 420 (753)
Q Consensus 341 ~~~~~~~~~~~~~~f~~~~~~~EPyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~Y~~~~ell~dL~~i~~sL~~~ 420 (753)
.... ..++++||||++|..|+.||.+|...+........ ..+...+|.+++||++||..|++||.++
T Consensus 314 ~~~~------------~~~~~~EPYR~~l~~i~~rL~~t~~~~~~~~~~~~-~~~~~~~Y~~~~ell~dL~~i~~SL~~~ 380 (911)
T PRK00009 314 SPDQ------------SPHRRDEPYRRALKGIRARLAATADWLEARLAGEE-APPPADPYASAEELLADLDLIYQSLRAC 380 (911)
T ss_pred cccc------------ccccCCCcHHHHHHHHHHHHHHHHHHHHhhhccCC-CCcccccCCCHHHHHHHHHHHHHHHHhC
Confidence 2111 12367899999999999999999987654332211 1112347999999999999999999999
Q ss_pred CCccchhhHHHHHHHHHHHhCCccccccccccchHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhhcCCCCCCCCCCC
Q 004448 421 GDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRGKRPLFGSDLP 500 (753)
Q Consensus 421 ~~~~~a~~~L~~lir~v~~FGfhla~LDIRQ~S~~H~~av~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~ 500 (753)
|++.+|+|.|.++|++|++||||||+|||||||++|++||+||++++|.++|.+|||++|++||+++|.++||+.++...
T Consensus 381 ~~~~~A~~~L~~lir~v~~FGfhla~LDiRQ~S~~H~~ai~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~ 460 (911)
T PRK00009 381 GMGILANGRLLDLLRRVEVFGFHLARLDIRQESSRHEDAVAELTRYLGLGDYASLSEAEKQAFLLRELNSRRPLIPPNWE 460 (911)
T ss_pred CCccchhhHHHHHHHHHHhhCcccCCcccccChHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhCCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999987999999999999999999999999999888
Q ss_pred CCHHHHHHHHHHHH----HHcCCCCccCcEEecCCCCcccHHHHHHHHHHcCCC------CCCccccccCChHHHhchHH
Q 004448 501 KTEEIADVLDTFHV----ISELPADSFGAYIISMATAPSDVLAVELLQRECRVK------QPLRVVPLFEKLADLEAAPA 570 (753)
Q Consensus 501 ~s~~~~~~l~~f~~----i~~~~~~a~g~yIISmt~s~sDvL~Vl~L~k~~gl~------~~l~VvPLFETi~DL~~a~~ 570 (753)
+|+++.+++++|.. ++.+++++||.||||||+++||||+|++|+|++|+. ++++||||||||+||+|||.
T Consensus 461 ~s~~~~~~l~~~~~~~~~~~~~~~~~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~~ 540 (911)
T PRK00009 461 YSELTSKELAEFLAARRLIAEFGAEAIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAAD 540 (911)
T ss_pred cChhhHHHHHHHHHHHHHHHHhCchhhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHHH
Confidence 87766666555554 556678999999999999999999999999999985 38999999999999999999
Q ss_pred HHHHHhccHHHHHhhc---CceEEEEeecCCCcchhHHhHhHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcchh
Q 004448 571 SVARLFSIDWYRNRIS---GKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTH 647 (753)
Q Consensus 571 im~~Ll~~p~yr~~l~---~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~fFHGRGGsvgRGGGP~~ 647 (753)
||++||++|+||+|++ +.|||||||||||||||+++|+|+||+||++|+++|+++||+++|||||||||||||||+|
T Consensus 541 il~~l~~~p~yr~~l~~~~~~qeVMlGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~FhGrGGsv~RGGgp~~ 620 (911)
T PRK00009 541 VMRQLLSLPWYRGLIAGRGNLQEVMLGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTLFHGRGGTVGRGGGPAY 620 (911)
T ss_pred HHHHHHcChHHHHHHhcCCCeEEEEeecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCChHH
Confidence 9999999999999995 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHHHHHHHHHhhhh
Q 004448 648 LAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSIVF 727 (753)
Q Consensus 648 ~ailaqP~gsv~g~iR~TeQGEvI~~kYg~~~~A~r~LE~~~~a~l~~s~~~~~~~~~~~~~~me~ls~~s~~~Yr~Lv~ 727 (753)
+||+|||+|+++|+||+|||||||++|||+|.+|.+|||++++|+|++++.++++++++|+++|++||+.|+++||+||+
T Consensus 621 ~ai~~qp~g~~~g~iR~TeQGEvI~~kY~~~~~a~~nLE~~~~a~l~~~~~~~~~~~~~~~~~m~~ls~~s~~~Yr~lv~ 700 (911)
T PRK00009 621 AAILSQPPGSVKGRIRVTEQGEVIRSKYGLPEVARRNLELLTAATLEASLLPPPEPKPEWREIMDELSDRSCKAYRGLVR 700 (911)
T ss_pred HHHHhCCCccccCceEEEeechhHHHhcCChHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998665556788999999999999999999999
Q ss_pred cCCChhhhhhhcccccccch
Q 004448 728 QEPRFVEYFRLVSISPIHHH 747 (753)
Q Consensus 728 ~~p~F~~yF~~aTPi~~~~~ 747 (753)
++|+|++||.++||+.++..
T Consensus 701 ~~~~F~~yf~~~tP~~e~~~ 720 (911)
T PRK00009 701 ENPDFVDYFRAATPIQEIGK 720 (911)
T ss_pred cCCCHHHHHHHhChHHHHHh
Confidence 99999999999999999865
No 3
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=100.00 E-value=6.7e-184 Score=1627.08 Aligned_cols=714 Identities=42% Similarity=0.677 Sum_probs=653.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHhHhhhcCCCchhHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Q 004448 26 EDDKLVEYDALLLDRFLDILQDLHGEDIRETVQECYELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLA 105 (753)
Q Consensus 26 ~~~~l~~~~~~L~~lL~evl~e~~G~~~~~~ve~ir~ls~~~~~~~~~~~~~~L~~~l~~L~~~~~~~vaRAFs~~f~L~ 105 (753)
.+..|+.|+++||++||+||+++.|++++++||++|.+++.++....+...++|.+.+++|+++++..|+||||+||+|+
T Consensus 46 ~~~~L~~dv~~Lg~lLg~vl~~~~g~~~~~~ve~ir~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~v~raFs~~~~L~ 125 (974)
T PTZ00398 46 FQEPLDLDIKALEFLLFDLVKDHWPEDGFEIIFDILKLSMKFSENEDSESFNTLWKKIYNLDSGYLGLVVRLFNHMCVLS 125 (974)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 34579999999999999999999999999999999999998876544456788999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCCCCCcchHHHHHHHHHHHcCCCHHHHHHHhccCceeEeeccCCCccchhhHHHHH
Q 004448 106 NLAEEVQIAYRRRIKLKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKH 185 (753)
Q Consensus 106 NiAEe~~r~r~~r~~~~~~~~~~~~~~~~~~s~~~~l~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~Rrtvl~~~ 185 (753)
|||||+|++|++|.+.+.+... ..+.+|||..++.+|+ +.|+++++|++.|+++.|+|||||||||++|||||++|
T Consensus 126 NiAE~~~~~r~~r~~~~~~~~~---~~~~~~sl~~~l~~L~-~~g~~~e~i~~~L~~~~i~pVlTAHPTE~~RrTvL~~~ 201 (974)
T PTZ00398 126 NYAEWAHRIRRRRAFERSFTDN---DRIFTESLKNTIEMLL-QAGFDKEEIYKQLCNQEIDLVLTAHPTQAQRISVLKNC 201 (974)
T ss_pred HHHHHHHHHHHHHHhhcccccc---CCCccCcHHHHHHHHH-HcCCCHHHHHHHHhcCceeeeeccCCccccHHHHHHHH
Confidence 9999999999888765421110 1245789999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhcccccccCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 004448 186 GRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNI 265 (753)
Q Consensus 186 ~~I~~~L~~~~~~~~t~~e~~~~~~~L~~~i~~LW~T~~ir~~KPtv~DE~~~~l~y~~~~l~~avP~l~~~l~~al~~~ 265 (753)
++|+++|.++++..+++.|++++.++|+++|++||||+++|+.||||.||++||++||+++||++||.+|++++++|.++
T Consensus 202 ~~I~~~L~~ld~~~~t~~e~~~~~~~L~~~I~~LW~TdeiR~~KPtv~DE~~~gl~y~~~sl~~aiP~~~~~l~~al~~~ 281 (974)
T PTZ00398 202 QRLGELLLSLDNTDLTPFEIKDLKKNLQRLLAMLWKTDTIRRAKPTPLDEAQNLINTIENTIFDALPNFIRYIDNVLYEY 281 (974)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHhCcchhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCccCCHHHHHhHhhhhh-c
Q 004448 266 GINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHR-S 344 (753)
Q Consensus 266 ~~~~~~~~~~~~i~fgSWiGGDRDGNP~VT~~vT~~~~~~~r~~~l~~y~~~l~~L~~~LS~~~~s~~l~~~~~~~~~-~ 344 (753)
+. ...|..+++|+|||||||||||||||||+||++|+.++|+.|+++|++++++|.++||++.||+++.++++.... .
T Consensus 282 ~~-~~~~~~~~~i~fGSWiGGDRDGNP~VTaevT~~~l~~~r~~al~~Y~~~l~~L~~~LS~s~~~~~L~~~~~~~~~~~ 360 (974)
T PTZ00398 282 NL-DPLPPTKKLFTFSSWVGGDRDGNPFVTAEVTRQVVYFNRIRACELFIHMIEKLMYDLPLKSCTEKLKEYVDNLPDEI 360 (974)
T ss_pred cC-CCCCCCCCceeccCCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhhhhhhh
Confidence 64 335556789999999999999999999999999999999999999999999999999999999999987665321 0
Q ss_pred c--------hhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCC--CCCCcCCCCCCHHHhhHHHHHHH
Q 004448 345 S--------KRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGI--SDIPEDIAYTHVEQFLEPLELCY 414 (753)
Q Consensus 345 ~--------~~~~~~~~~f~~~~~~~EPyR~~l~~i~~rL~~t~~~~~~~~~~~~--~~~~~~~~Y~~~~ell~dL~~i~ 414 (753)
. +..... +.....++||||++|..|+.||.+|+..+........ ........|.+++||++||..|+
T Consensus 361 ~~~~~~~~~~~~~~~---~~~~~~~~EPYR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~~~Y~~~~ell~dL~~i~ 437 (974)
T PTZ00398 361 SFYITDKDATYLLRE---FMGFIPEKELYRRALLHVRAKLIATRDYYKDLISNHSVDPEFRRELAYHSTDEILEPLIECY 437 (974)
T ss_pred ccccccchhhhhhhh---hcccCCCCCcHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHHH
Confidence 0 001111 0001126899999999999999999987754322110 00112236999999999999999
Q ss_pred HHHHhcCCccchhhHHHHHHHHHHHhCCccccccccccchHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhhcCCCCC
Q 004448 415 RSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRGKRPL 494 (753)
Q Consensus 415 ~sL~~~~~~~~a~~~L~~lir~v~~FGfhla~LDIRQ~S~~H~~av~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl 494 (753)
+||.++|+..+|+|.|.++||+|++||||||+|||||||++|++||+||++++|+++|.+|||++|++||.++|.++||+
T Consensus 438 ~SL~~~g~~~lA~g~L~dlir~v~~FGfhLa~LDIRQ~S~~H~~ai~el~~~~g~~~Y~~l~E~er~~~L~~eL~~~rpl 517 (974)
T PTZ00398 438 NSLEDVGNTILARGRLLDVIRQVKTFGLHLMKLDIRQESSKHEKAMDEICEYLGLGNYSELSEEEKQDFLLDILPSKRPL 517 (974)
T ss_pred HHHHHCCChhhHhhHHHHHHHHHHHhCccccccccccCcHHHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCCccCcEEecCCCCcccHHHHHHHHHHcCCC---CCCccccccCChHHHhchHHH
Q 004448 495 FGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVK---QPLRVVPLFEKLADLEAAPAS 571 (753)
Q Consensus 495 ~~~~~~~s~~~~~~l~~f~~i~~~~~~a~g~yIISmt~s~sDvL~Vl~L~k~~gl~---~~l~VvPLFETi~DL~~a~~i 571 (753)
.++..++|++++++|++|++|++++++++|+||||||+++||||+|++|+|++|+. ++++||||||||+||+||+.|
T Consensus 518 ~~~~~~~s~~~~evl~~f~~ia~~~~~alg~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~i 597 (974)
T PTZ00398 518 IPHDLNWPSEVNEVLDTFKVCSELENEALGAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSKT 597 (974)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHccccccceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999998863 689999999999999999999
Q ss_pred HHHHhccHHHHHhh----cCceEEEEeecCCCcchhHHhHhHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcchh
Q 004448 572 VARLFSIDWYRNRI----SGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTH 647 (753)
Q Consensus 572 m~~Ll~~p~yr~~l----~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~fFHGRGGsvgRGGGP~~ 647 (753)
|++||++|+||+|+ ++.|||||||||||||||+++|+|+||+||++|+++|+++||+++|||||||||||||||+|
T Consensus 598 l~~ll~~p~Yr~~l~~~~~~~qeVMlGYSDS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~FhGrGGsvgRGGgp~~ 677 (974)
T PTZ00398 598 LEELFSNPWYLKHLKTVDNGIQEIMIGYSDSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFFHGRGGSVSRGGGPQH 677 (974)
T ss_pred HHHHHcCHHHHHHHhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCCChH
Confidence 99999999999999 36899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCCCCC-ChHHHHHHHHHHHHHHHHHHhhh
Q 004448 648 LAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSP-KPEWRALMDEMAVIATKEYRSIV 726 (753)
Q Consensus 648 ~ailaqP~gsv~g~iR~TeQGEvI~~kYg~~~~A~r~LE~~~~a~l~~s~~~~~~~-~~~~~~~me~ls~~s~~~Yr~Lv 726 (753)
+||+|||+|+++|.||+|||||||++|||+|++|.+|||++++|++.+++.+++.+ +++|+++|++||+.|+++||+||
T Consensus 678 ~aIlsqp~~~~~g~ir~TeQGE~i~~ky~~~~~a~~~le~~~aA~l~~~~~~~~~~~~~~~~~~m~~la~~s~~~Yr~lv 757 (974)
T PTZ00398 678 LAILSQPPNTIKSYLRITIQGETITQNFGLKGICLRTWELYMSALLKCSLLADPIPVKQEWRELMDEMSEISMKEYRKVV 757 (974)
T ss_pred HHHhcCCCccccCeeEEeeechhhHHhcCChHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998665555 78899999999999999999999
Q ss_pred hcCCChhhhhhhcccccccch
Q 004448 727 FQEPRFVEYFRLVSISPIHHH 747 (753)
Q Consensus 727 ~~~p~F~~yF~~aTPi~~~~~ 747 (753)
+++|+|++||.++||+.++..
T Consensus 758 ~~~~~fv~yf~~atP~~e~~~ 778 (974)
T PTZ00398 758 RENPDFVPYFRSVTPEKEIGE 778 (974)
T ss_pred hcCCCHHHHHHHhChHHHHHh
Confidence 999999999999999998764
No 4
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=100.00 E-value=1.9e-168 Score=1476.65 Aligned_cols=579 Identities=46% Similarity=0.754 Sum_probs=482.0
Q ss_pred cCceeEeeccCCCccchhhHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhcccccccCCCChHHHHHHHHH
Q 004448 162 NQTVDLVFTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMS 241 (753)
Q Consensus 162 ~~~i~pVlTAHPTEa~Rrtvl~~~~~I~~~L~~~~~~~~t~~e~~~~~~~L~~~i~~LW~T~~ir~~KPtv~DE~~~~l~ 241 (753)
++.|+|||||||||++|||||+++++|+.+|.++++..+++.|+.+++++|+++|+.||||+++|++||||.||++|||+
T Consensus 1 ~l~i~pVlTAHPTEa~RrtvL~~~~~I~~lL~~~d~~~lt~~e~~~~~~~L~~~I~~LWqT~eiR~~KPtv~DE~~~~L~ 80 (794)
T PF00311_consen 1 ELEIEPVLTAHPTEAKRRTVLDKHRRIAELLDQLDNPDLTPRERAELEERLRREITALWQTDEIRREKPTVLDEARNGLY 80 (794)
T ss_dssp --EEEEEEE--TT--SSCHHHHHHHHHHHHHHHCT-TT--HHHHHHHHHHHHHHHHHHHCS--C-SS---HHHHHHHHHH
T ss_pred CceEEEEeccCCCcCcHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCccccccCCChHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCCCCCCCCCccChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004448 242 YFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDL 321 (753)
Q Consensus 242 y~~~~l~~avP~l~~~l~~al~~~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VT~~vT~~~~~~~r~~~l~~y~~~l~~L 321 (753)
||+++||++||.+|+++++++.+++++...+ .+|+|+|||||||||||||||||+||++|+.++|+++++.|.+++++|
T Consensus 81 y~~~~l~~aiP~l~~~l~~al~~~~~~~~~~-~~~~i~fGSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~y~~~l~~L 159 (794)
T PF00311_consen 81 YFENSLFDAIPQLYRRLERALREHYPDPRLP-VPPFIRFGSWIGGDRDGNPFVTAEVTREALRLQREAALRLYLRELDEL 159 (794)
T ss_dssp HHCCTCCCCHHHHHHHHHHHHHCCTS-S----T--SEEEEE-TTTB-TT-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccCC-CCCeeEeccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998644433 478999999999999999999999999999999999999999999999
Q ss_pred HhHhcC----ccCCHHHHHhHhhhhhcchhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcC
Q 004448 322 MFELSM----WRCNDELRARADGLHRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPED 397 (753)
Q Consensus 322 ~~~LS~----~~~s~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~EPyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~ 397 (753)
.++||+ .++|+++.++++...+..+..... +..++++||||++|..|+.||.+|+.......... .....
T Consensus 160 ~~~LS~S~~~~~~s~~L~~~l~~~~~~~~~~~~~----~~~~~~~EPYR~~l~~i~~RL~at~~~~~~~~~~~--~~~~~ 233 (794)
T PF00311_consen 160 RRELSLSDRRVPVSDELRARLEDDREALPEVAEE----FSRRNPDEPYRRKLRLIRARLEATLRRLEAGLSGR--ADPAA 233 (794)
T ss_dssp HHH-------S---HHHHHCCHCCCH---TT-SS----SS---TTSHHHHHHHHHHHHHHHHHHHHHHHHHTS--SS-ST
T ss_pred HHHHHHhhcccccHHHHHHHHhhccccccccccc----ccccccccHHHHHHHHHHHHHHHHHHHHhhccccc--CCCcc
Confidence 999999 479999999777644333322211 23557899999999999999999998766655432 12334
Q ss_pred CCCCCHHHhhHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHhCCccccccccccchHHHHHHHHHHHHcCCC-CCCCCC
Q 004448 398 IAYTHVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIG-SYREWS 476 (753)
Q Consensus 398 ~~Y~~~~ell~dL~~i~~sL~~~~~~~~a~~~L~~lir~v~~FGfhla~LDIRQ~S~~H~~av~el~~~~g~~-~Y~~l~ 476 (753)
.+|.+++||++||..|++||.++|+..+|++.|.++|++|++||||||+|||||||++|++||++|++.+|++ +|.+|+
T Consensus 234 ~~Y~~~~Ell~dL~~i~~SL~~~g~~~lA~~~L~~lir~V~~FGfhLa~LDIRQnS~~H~~av~el~~~~g~~~~Y~~l~ 313 (794)
T PF00311_consen 234 EAYRSAEELLADLRLIRDSLIANGAERLADGRLRDLIRQVETFGFHLASLDIRQNSTVHEEAVAELLRHAGIPDDYAELS 313 (794)
T ss_dssp TS--SHHHHHHHHHHHHHHHHHTT-HCCCTTHHHHHHHHHHHCTTTSSEEEEEEECHHHHHHHHHHHHCCTS---CCCS-
T ss_pred cCCCCHHHHHHHHHHHHHHHHHCCCchHHHhhHHHHHHHHhccCcceecccccccHHHHHHHHHHHHHhcCCCCCcccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999995 799999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHcCC----CCccCcEEecCCCCcccHHHHHHHHHHcCCC--
Q 004448 477 EEKRQEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHVISELP----ADSFGAYIISMATAPSDVLAVELLQRECRVK-- 550 (753)
Q Consensus 477 E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~~~l~~f~~i~~~~----~~a~g~yIISmt~s~sDvL~Vl~L~k~~gl~-- 550 (753)
|++|+++|+++|.++||+.++..++++++++++++|+++++++ +++||+||||||+++||||+|++|+|++|+.
T Consensus 314 e~~r~~~L~~eL~~~rpl~~~~~~~~~~~~~~l~~f~~~~~~~~~~g~~~~~~yIISmt~~~sdvL~v~~L~k~~gl~~~ 393 (794)
T PF00311_consen 314 EEERIALLTRELKSPRPLIPPFAPLSEETREVLDTFRVIAEIQKRYGPDAIGRYIISMTESASDVLEVLLLAKEAGLADG 393 (794)
T ss_dssp HHHHHHHHHHHHH-SS--S-TT----HHHHHHHHHHHHHHHS-----CCCEEEEEECT--SCHHHHHHHHHHHCTT---S
T ss_pred HHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHHHHHHHhhhcchhhhHHHheeeCCCChHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999999999999999884 6899999999999999999999999999994
Q ss_pred ----CCCccccccCChHHHhchHHHHHHHhccHHHHHhhc---CceEEEEeecCCCcchhHHhHhHHHHHHHHHHHHHHH
Q 004448 551 ----QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRIS---GKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAK 623 (753)
Q Consensus 551 ----~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~---~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~ 623 (753)
++++||||||||+||+|||.||++||++|+||+||+ ++||||||||||||||||++|||+||+||++|++||+
T Consensus 394 ~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVMlGYSDS~KDgG~laa~w~ly~Aq~~L~~v~~ 473 (794)
T PF00311_consen 394 GDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVMLGYSDSNKDGGYLAANWALYKAQEALVAVAR 473 (794)
T ss_dssp S---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEEEECCCHHHHC-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEEeccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999995 4899999999999999999999999999999999999
Q ss_pred HhCCeEEEecCCCCCCCCCCcchhhhhhcCCCCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCCCCC
Q 004448 624 QYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSP 703 (753)
Q Consensus 624 ~~gV~l~fFHGRGGsvgRGGGP~~~ailaqP~gsv~g~iR~TeQGEvI~~kYg~~~~A~r~LE~~~~a~l~~s~~~~~~~ 703 (753)
+|||+++|||||||||||||||+|+||+|||+||++|+||+|||||||++|||+|++|.||||++++|++.+++.++..+
T Consensus 474 ~~gV~l~~FHGRGGsvgRGGGp~~~ai~aqP~gtv~g~ir~TeQGEvI~~ky~~~~~A~~~LE~~~~a~l~~~~~~~~~~ 553 (794)
T PF00311_consen 474 KHGVKLRFFHGRGGSVGRGGGPTHRAILAQPPGTVNGRIRITEQGEVISAKYGNPEIAQRNLEQLTAAVLEASLRPPPEP 553 (794)
T ss_dssp CCT-EEEEEEESSTCGGCTHHHHHHHHHTS-TTTTTTEEEEEEECHHHHHHHSSHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred HcCCeEEEEeCCCCcccCCCChHHHHHHhCCCCccCCceEEeechHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998766655
Q ss_pred C-hHHHHHHHHHHHHHHHHHHhhhhcCCChhhhhhhcccccccch
Q 004448 704 K-PEWRALMDEMAVIATKEYRSIVFQEPRFVEYFRLVSISPIHHH 747 (753)
Q Consensus 704 ~-~~~~~~me~ls~~s~~~Yr~Lv~~~p~F~~yF~~aTPi~~~~~ 747 (753)
. ++|+++|++||+.|+++||+|||++|+|++||+++|||.|+..
T Consensus 554 ~~~~~~~~m~~ls~~s~~~Yr~Lv~~~p~F~~yf~~aTPi~ei~~ 598 (794)
T PF00311_consen 554 PPPEWRELMEELSEASFKAYRALVYENPGFLEYFRQATPIDEIGK 598 (794)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHS-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhCCCCcHHHHHhcCHHHHHHh
Confidence 5 8899999999999999999999999999999999999999875
No 5
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=100.00 E-value=1.2e-59 Score=522.69 Aligned_cols=225 Identities=16% Similarity=0.208 Sum_probs=199.0
Q ss_pred HHHHHHHcCCCCccCcEEecCCCCcccHHHHHHHHHHcC--CC----------CCCccccccCChHHHhchHHHHHHHhc
Q 004448 510 DTFHVISELPADSFGAYIISMATAPSDVLAVELLQRECR--VK----------QPLRVVPLFEKLADLEAAPASVARLFS 577 (753)
Q Consensus 510 ~~f~~i~~~~~~a~g~yIISmt~s~sDvL~Vl~L~k~~g--l~----------~~l~VvPLFETi~DL~~a~~im~~Ll~ 577 (753)
..+.......+.+|+.||||||+++||||+|++|+|++| +. +.|+|||||||++||.||+.||++||+
T Consensus 109 ~~~d~~~~~~~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~ 188 (494)
T PRK13655 109 NSYDLALSFYTQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLK 188 (494)
T ss_pred HHHHHHHhcCchhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHh
Confidence 334444455578999999999999999999999999998 52 479999999999999999999999999
Q ss_pred cHHHHHhhcCceEEEEeecCCCcchhHHhHhHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcc--hhhhhhcCCC
Q 004448 578 IDWYRNRISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGP--THLAILSQPP 655 (753)
Q Consensus 578 ~p~yr~~l~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~fFHGRGGsvgRGGGP--~~~ailaqP~ 655 (753)
+|.++. +.|||||||||||||||+++|+|+||+||++|+++|+++||++++|||||||||||||| ++++|++||+
T Consensus 189 ~~~~~~---~~qeVmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~fhGrGg~~~RGGgpp~~~~ail~q~~ 265 (494)
T PRK13655 189 AKKPHG---KYLRVFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYPILGVGSLPFRGHLSPENLENVLEEYP 265 (494)
T ss_pred chhhcC---CeeEEEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEEeccCCCCCCCCCCChHHHHHHHhCCC
Confidence 975544 78999999999999999999999999999999999999999999999999999999998 8899999998
Q ss_pred CcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHHHHHHHHHhhhhcCCChhhh
Q 004448 656 DTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSIVFQEPRFVEY 735 (753)
Q Consensus 656 gsv~g~iR~TeQGEvI~~kYg~~~~A~r~LE~~~~a~l~~s~~~~~~~~~~~~~~me~ls~~s~~~Yr~Lv~~~p~F~~y 735 (753)
|.+|+|||| +.||+.|. ..+...+.+++++...++..++++|+++|+++|+.|+++||++|+++|+|++|
T Consensus 266 ----g~~r~TeQg---a~rY~~~~---e~~~~av~~~~~~~~~~p~~~~~~~~~~m~~la~~s~~~Yr~~V~~~~~fv~y 335 (494)
T PRK13655 266 ----GVYTFTVQS---AFRYDYPY---EEVKKAIEEINEKLIAPPRILSEEDKEELLEIIEKYSERYQSQIEKLADTINR 335 (494)
T ss_pred ----CCeEEEecc---ccccCCCH---HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH
Confidence 569999999 59999996 23333333344666666667788999999999999999999999999999999
Q ss_pred hhhcccccccch
Q 004448 736 FRLVSISPIHHH 747 (753)
Q Consensus 736 F~~aTPi~~~~~ 747 (753)
|.++||..+...
T Consensus 336 f~~~tP~~r~r~ 347 (494)
T PRK13655 336 VAKLIPKRRDRK 347 (494)
T ss_pred HHHcCcHHHHhh
Confidence 999999988654
No 6
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=100.00 E-value=4.5e-48 Score=430.55 Aligned_cols=194 Identities=21% Similarity=0.259 Sum_probs=175.5
Q ss_pred ccCcEEecCCCCcccHHHHHHHHHHcCC---------------------CCCCccccccCChHHHhchHHHHHHHhccHH
Q 004448 522 SFGAYIISMATAPSDVLAVELLQRECRV---------------------KQPLRVVPLFEKLADLEAAPASVARLFSIDW 580 (753)
Q Consensus 522 a~g~yIISmt~s~sDvL~Vl~L~k~~gl---------------------~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~ 580 (753)
+|--.|||||+++||||+|+.|+|++|+ .++|+|||||||++||.||++||+++|+
T Consensus 122 pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~l~--- 198 (506)
T TIGR02751 122 PIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEYAE--- 198 (506)
T ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHHHH---
Confidence 4555799999999999999999999985 1478999999999999999999999998
Q ss_pred HHHhh-cCceEEEEeecCCCcchhHHhHhHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCc-chhhh-hhcCCCCc
Q 004448 581 YRNRI-SGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGG-PTHLA-ILSQPPDT 657 (753)
Q Consensus 581 yr~~l-~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~fFHGRGGsvgRGGG-P~~~a-ilaqP~gs 657 (753)
++ .+.|+||||||||+||+|+++|+|++|+||++|.++|+++||++++|||||||+||||| |.+.+ |++|||
T Consensus 199 ---~~~~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~pfhGrGgspfRGGg~P~n~a~il~qpp-- 273 (506)
T TIGR02751 199 ---AHEPEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYPIIGAGSLPFRGHLSPENIERVLDEYP-- 273 (506)
T ss_pred ---hcCcCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeecCCCCcCCCCChhhHHHHHhcCC--
Confidence 44 56799999999999999999999999999999999999999999999999999999999 99999 999999
Q ss_pred ccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHH---ccCCCCCCCChHHHHHHHHHHHHHHHHHHhhhhcCCChhh
Q 004448 658 IHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLE---HGMHPPVSPKPEWRALMDEMAVIATKEYRSIVFQEPRFVE 734 (753)
Q Consensus 658 v~g~iR~TeQGEvI~~kYg~~~~A~r~LE~~~~a~l~---~s~~~~~~~~~~~~~~me~ls~~s~~~Yr~Lv~~~p~F~~ 734 (753)
|.+|+|||| +.||+.|. |++++|++. +...+++.+.++|+++|+++++.|+++||++|..--+.+.
T Consensus 274 --G~~t~TeQs---afRYd~p~------e~v~~Av~~~~~a~~~~~~~~~~e~~e~m~~ia~~s~~~Yr~~V~~la~~in 342 (506)
T TIGR02751 274 --GVYTFTVQS---AFKYDYPR------EEVVAAIRRINEKLPNAPPILIDEEEEIIVEIIEIYAKRYQKIIEKLAPTIN 342 (506)
T ss_pred --CceEEeeec---hhhcCCCH------HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999 99999999 999999994 4444555567889999999999999999999854333333
No 7
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=98.37 E-value=9.1e-06 Score=92.12 Aligned_cols=193 Identities=20% Similarity=0.229 Sum_probs=134.0
Q ss_pred CCccCcEEecCCCCcccHHHHHHHHHH----------------cCCC---CCCccccccCChHHHhchHHHHHHHhccHH
Q 004448 520 ADSFGAYIISMATAPSDVLAVELLQRE----------------CRVK---QPLRVVPLFEKLADLEAAPASVARLFSIDW 580 (753)
Q Consensus 520 ~~a~g~yIISmt~s~sDvL~Vl~L~k~----------------~gl~---~~l~VvPLFETi~DL~~a~~im~~Ll~~p~ 580 (753)
..++---|.=||+|+.+|..|+-..+. .+.. ..++|+||||+.+.|-|+++|++.++
T Consensus 118 ~~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~---- 193 (491)
T PF14010_consen 118 VQPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYL---- 193 (491)
T ss_dssp S-S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHH----
T ss_pred CcchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHH----
Confidence 345666799999999999999866432 2221 58999999999999999999999988
Q ss_pred HHHhhc---CceEEEEeecCCCcchhHHhHhHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcch--hhhhhcCCC
Q 004448 581 YRNRIS---GKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPT--HLAILSQPP 655 (753)
Q Consensus 581 yr~~l~---~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~fFHGRGGsvgRGGGP~--~~ailaqP~ 655 (753)
+..+ ..|-|+||=|||.=--|.++|.-..=-|-.+|.++.++.||++-=.=|-|.++=|||=.- -..++.+=+
T Consensus 194 --~~~g~~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~IyPIiG~GS~PFRG~l~p~~~~~~~~EY~ 271 (491)
T PF14010_consen 194 --KDKGRDPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIYPIIGVGSPPFRGGLSPPNVERVLEEYP 271 (491)
T ss_dssp --HHTT---SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-BSSGGGT---TTGHHHHHHHTT
T ss_pred --HHhcCCchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCceeeeeccCCCCcCCCCChHhHHHHHHhcC
Confidence 4442 579999999999999999999999999999999999999999999999999999998542 223344333
Q ss_pred CcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHHHHHHHHHhhhhc
Q 004448 656 DTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSIVFQ 728 (753)
Q Consensus 656 gsv~g~iR~TeQGEvI~~kYg~~~~A~r~LE~~~~a~l~~s~~~~~~~~~~~~~~me~ls~~s~~~Yr~Lv~~ 728 (753)
|---+|.|- +.||..|.--..+.=. .........+...+.+..+.+-.+.+.+.+.|+..|..
T Consensus 272 ----gv~T~TIQS---AfrYD~p~~~v~~ai~---~l~~~~~~~p~~~~~ee~~~~~~ii~~~s~~Y~~~i~~ 334 (491)
T PF14010_consen 272 ----GVYTFTIQS---AFRYDYPYEEVIKAIE---KLNEAPRKKPRIIDEEEEEILLEIIEKYSAEYRSQIEK 334 (491)
T ss_dssp ----T-SEEEE-H---HHHHTTHHHHHHHHHH---HHHHGGG-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CeeEEEeee---hhhcCCCHHHHHHHHH---HHHhcccCCcccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689986 7899888654433211 11121112333445556778999999999999998743
No 8
>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=96.73 E-value=0.0044 Score=69.27 Aligned_cols=151 Identities=25% Similarity=0.304 Sum_probs=116.4
Q ss_pred CcEEecCCCCcccHHHHHHHHHH---------cCCC---------C-CCccccccCChHHHhchHHHHHHHhccHHHHHh
Q 004448 524 GAYIISMATAPSDVLAVELLQRE---------CRVK---------Q-PLRVVPLFEKLADLEAAPASVARLFSIDWYRNR 584 (753)
Q Consensus 524 g~yIISmt~s~sDvL~Vl~L~k~---------~gl~---------~-~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~ 584 (753)
=-.|.=||+|+..|+.|+-..+. -|.. + -+.|+||||+++.|.+|..|... |+..
T Consensus 126 fEVIlPMTts~~el~~v~~~y~~~v~~~~~~~~~~~vk~~vge~~P~~IeviPl~e~~~~ll~a~~i~~~------y~~g 199 (488)
T COG1892 126 FEVILPMTTSVEELLRVHEYYRDFVRGRLELEDGVTVKEWVGEFIPKLIEVIPLFEDRESLLKAALIVGE------YAEG 199 (488)
T ss_pred eeEecccCCCHHHHHHHHHHHHHHHcchhHhhcCchHhhhhccccHHHHhhhHhHhhHHHHHHHHHHHHH------HHhc
Confidence 34788999999999999865433 2321 2 58899999999999999988875 2222
Q ss_pred h-cCceEEEEeecCCCcchhHHhHhHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcchhh--hhhcCCCCcccCc
Q 004448 585 I-SGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHL--AILSQPPDTIHGS 661 (753)
Q Consensus 585 l-~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~fFHGRGGsvgRGGGP~~~--ailaqP~gsv~g~ 661 (753)
. -..|-|-||=||+.=.=|.++|....=+|-.+|.++-++-||++--.=|-|..+=|||=.-+. ..+.+=+| -
T Consensus 200 ~~~e~~RVFLarSDpAmnyG~laA~l~~K~AL~~l~el~ee~~~~i~PI~G~Gs~PFRG~l~P~n~e~~~~EY~g----v 275 (488)
T COG1892 200 RDPEYLRVFLARSDPAMNYGHLAAVLAVKKALSELSELSEELGVPIYPILGVGSLPFRGHLRPENAENVLEEYAG----V 275 (488)
T ss_pred CCchhheeeeecCchhhccchHHHHHHHHHHHHHHHHHHhhcCCcccceecCCCCCcCCCCChhhhHHHHHHcCC----c
Confidence 1 246889999999999999999999999999999999999999999999999999999765433 34554443 3
Q ss_pred eeeecccchhhhhcCCh-hHHHHHHHH
Q 004448 662 LRVTVQGEVIEQSFGEE-HLCFRTLQR 687 (753)
Q Consensus 662 iR~TeQGEvI~~kYg~~-~~A~r~LE~ 687 (753)
--.|.|- +.||..+ ..+.+-.+.
T Consensus 276 ~T~TvQS---afkYD~~~~~v~~~i~~ 299 (488)
T COG1892 276 YTYTVQS---AFKYDHEYGDVVKAIER 299 (488)
T ss_pred eEEEEee---cccccCCHHHHHHHHHH
Confidence 5678886 5677654 344444444
No 9
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=96.27 E-value=0.011 Score=63.01 Aligned_cols=159 Identities=16% Similarity=0.183 Sum_probs=102.0
Q ss_pred HHHHHHHhCCccccccccccchHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhhcCCCCCCCCCCCCCHHHHHHHHHH
Q 004448 433 FLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRGKRPLFGSDLPKTEEIADVLDTF 512 (753)
Q Consensus 433 lir~v~~FGfhla~LDIRQ~S~~H~~av~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~~~l~~f 512 (753)
+...+..-||.++-+|. ||+..-...+..+++.+.. ....|+...........+.+|+
T Consensus 32 ~~e~~a~~G~D~v~iD~-EHg~~~~~~~~~~i~a~~~-------------------~g~~~lVRvp~~~~~~i~r~LD-- 89 (256)
T PRK10558 32 TTEVLGLAGFDWLVLDG-EHAPNDVSTFIPQLMALKG-------------------SASAPVVRVPTNEPVIIKRLLD-- 89 (256)
T ss_pred HHHHHHhcCCCEEEEcc-ccCCCCHHHHHHHHHHHhh-------------------cCCCcEEECCCCCHHHHHHHhC--
Confidence 44456688999999999 8888777777777754321 1111221111111111122221
Q ss_pred HHHHcCCCCccCcEEecCCCCcccHHHHHHHHHHc--CC----------------------CCCCccccccCChHHHhch
Q 004448 513 HVISELPADSFGAYIISMATAPSDVLAVELLQREC--RV----------------------KQPLRVVPLFEKLADLEAA 568 (753)
Q Consensus 513 ~~i~~~~~~a~g~yIISmt~s~sDvL~Vl~L~k~~--gl----------------------~~~l~VvPLFETi~DL~~a 568 (753)
.+ ....|+.|.+++.++-++.-.+|.. |. ...+.|+|+.||.+.++|+
T Consensus 90 -----~G---a~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt~~av~ni 161 (256)
T PRK10558 90 -----IG---FYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIESQQGVDNV 161 (256)
T ss_pred -----CC---CCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECCHHHHHHH
Confidence 11 1123566666666666655555442 10 1357799999999999999
Q ss_pred HHHHHHHhccHHHHHhhcCceEEEEeecCCCcchhHHh--HhHHHHHHHHHHHHHHHHhCCeEEEe
Q 004448 569 PASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLS--AAWQLYKTQEELVKVAKQYGVKLTMF 632 (753)
Q Consensus 569 ~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~la--a~W~Ly~Aq~~L~~v~~~~gV~l~fF 632 (753)
++|+. +.+.--||+|..|=+.+-|... ..=++..+..++...|+++|+.+-+|
T Consensus 162 ~eI~a-----------v~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~ 216 (256)
T PRK10558 162 DAIAA-----------TEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGIL 216 (256)
T ss_pred HHHhC-----------CCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEc
Confidence 99986 3467889999999888877543 12268889999999999999987544
No 10
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=96.09 E-value=0.018 Score=61.12 Aligned_cols=159 Identities=14% Similarity=0.171 Sum_probs=102.7
Q ss_pred HHHHHHHhCCccccccccccchHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhhcCCCCCCCCCCCCCHHHHHHHHHH
Q 004448 433 FLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRGKRPLFGSDLPKTEEIADVLDTF 512 (753)
Q Consensus 433 lir~v~~FGfhla~LDIRQ~S~~H~~av~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~~~l~~f 512 (753)
+...+...||.++-+|. ||+..-...+..+++.+.. ....|+...........+.+|+
T Consensus 25 ~~e~~a~~G~D~v~iD~-EHg~~~~~~~~~~~~a~~~-------------------~g~~~~VRvp~~~~~~i~r~LD-- 82 (249)
T TIGR03239 25 TTEVLGLAGFDWLLLDG-EHAPNDVLTFIPQLMALKG-------------------SASAPVVRPPWNEPVIIKRLLD-- 82 (249)
T ss_pred HHHHHHhcCCCEEEEec-ccCCCCHHHHHHHHHHHhh-------------------cCCCcEEECCCCCHHHHHHHhc--
Confidence 44456678999999998 8888877777777754321 1112222211111111222222
Q ss_pred HHHHcCCCCccCcEEecCCCCcccHHHHHHHHHHc--CC----------------------CCCCccccccCChHHHhch
Q 004448 513 HVISELPADSFGAYIISMATAPSDVLAVELLQREC--RV----------------------KQPLRVVPLFEKLADLEAA 568 (753)
Q Consensus 513 ~~i~~~~~~a~g~yIISmt~s~sDvL~Vl~L~k~~--gl----------------------~~~l~VvPLFETi~DL~~a 568 (753)
.+ ....|+.|.+|+.|+-++.-.+|.. |. ...+.|+|+.||.+.++|+
T Consensus 83 -----~G---a~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av~n~ 154 (249)
T TIGR03239 83 -----IG---FYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGVDNV 154 (249)
T ss_pred -----CC---CCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHHHhH
Confidence 11 2224666666666666665554442 10 1356799999999999999
Q ss_pred HHHHHHHhccHHHHHhhcCceEEEEeecCCCcchhHHh--HhHHHHHHHHHHHHHHHHhCCeEEEe
Q 004448 569 PASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLS--AAWQLYKTQEELVKVAKQYGVKLTMF 632 (753)
Q Consensus 569 ~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~la--a~W~Ly~Aq~~L~~v~~~~gV~l~fF 632 (753)
++|+. +.+.--||+|-.|=+.+-|... ..=++..|..++.+.|+++|+.+-+|
T Consensus 155 ~eI~a-----------v~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~ 209 (249)
T TIGR03239 155 DEIAA-----------VDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGIL 209 (249)
T ss_pred HHHhC-----------CCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEc
Confidence 99996 3567789999998887777543 22268889999999999999998654
No 11
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=96.06 E-value=0.027 Score=58.35 Aligned_cols=95 Identities=14% Similarity=0.204 Sum_probs=77.8
Q ss_pred cCcEEecCCCCcccHHHHHHHHHHcCC-----CCCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecC
Q 004448 523 FGAYIISMATAPSDVLAVELLQRECRV-----KQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSD 597 (753)
Q Consensus 523 ~g~yIISmt~s~sDvL~Vl~L~k~~gl-----~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSD 597 (753)
+...++-|++++.|+..+.-+++..-. ...+.|+|+.||.+.++|+++|+. +.+.--+|+|..|
T Consensus 85 ~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a-----------~~~v~~l~~G~~D 153 (221)
T PF03328_consen 85 ADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAA-----------VPGVDGLFFGPAD 153 (221)
T ss_dssp SSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHT-----------STTEEEEEE-HHH
T ss_pred CCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcc-----------cCCeeEEEeCcHH
Confidence 446799999999999999999987532 146899999999999999999983 4477889999999
Q ss_pred CCcchhHHh--HhHHHHHHHHHHHHHHHHhCCe
Q 004448 598 SGKDAGRLS--AAWQLYKTQEELVKVAKQYGVK 628 (753)
Q Consensus 598 S~KDgG~la--a~W~Ly~Aq~~L~~v~~~~gV~ 628 (753)
=+.|-|.-. ...+++.+..+++..|+++|+.
T Consensus 154 ls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~ 186 (221)
T PF03328_consen 154 LSASLGIPGQPDHPEVLEARSKVVLAARAAGKP 186 (221)
T ss_dssp HHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEE
T ss_pred HHhhhccCCCCcchHHHHHHHHHHHHHHHcCCC
Confidence 999988874 5678999999999999999984
No 12
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=94.56 E-value=0.15 Score=59.02 Aligned_cols=149 Identities=13% Similarity=0.180 Sum_probs=103.0
Q ss_pred HHHHHcCCCCccCcEEecCCCCcccHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEE
Q 004448 512 FHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEV 591 (753)
Q Consensus 512 f~~i~~~~~~a~g~yIISmt~s~sDvL~Vl~L~k~~gl~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeV 591 (753)
++.+...+ +-...+|+++++.||-.+--+..+.+. ..+.|+|+.||.+.++|+.+|+.. . --|
T Consensus 177 l~~~~~~~---~d~I~lskV~sa~dv~~l~~~l~~~~~-~~~~Iia~IEt~~av~nl~eI~~~--~-----------dgi 239 (473)
T TIGR01064 177 LKFGVEQG---VDMVAASFVRTAEDVLEVREVLGEKGA-KDVKIIAKIENQEGVDNIDEIAEA--S-----------DGI 239 (473)
T ss_pred HHHHHHCC---CCEEEECCCCCHHHHHHHHHHHHhcCC-CCceEEEEECCHHHHHhHHHHHhh--C-----------CcE
Confidence 44444433 445899999999999999888777663 257899999999999999999976 1 179
Q ss_pred EEeecCCCcchhHHhHhHHHHHHHHHHHHHHHHhCCeEEEecC-------CCCCCCCCCcchhhhhhcCCCCcccCceee
Q 004448 592 MIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHG-------RGGTVGRGGGPTHLAILSQPPDTIHGSLRV 664 (753)
Q Consensus 592 MlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~fFHG-------RGGsvgRGGGP~~~ailaqP~gsv~g~iR~ 664 (753)
|+|-.|=+.+-|. =++..+|.+++..|+++|+.+.. ++ .-..+-|.-..--.....+.-.. +
T Consensus 240 ~iG~gDL~~~lg~----~~l~~~~~~ii~aaraag~pvi~-atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~------v 308 (473)
T TIGR01064 240 MVARGDLGVEIPA----EEVPIAQKKMIRKCNRAGKPVIT-ATQMLDSMIKNPRPTRAEVSDVANAILDGTDA------V 308 (473)
T ss_pred EEchHHHHhhcCc----HHHHHHHHHHHHHHHHcCCCEEE-EChhhhhhhcCCCCCcccHHHHHHHHHcCCCE------E
Confidence 9999999999993 36888999999999999998665 44 44566665543222222221111 2
Q ss_pred ecccchhhhhcCChhHHHHHHHHHHH
Q 004448 665 TVQGEVIEQSFGEEHLCFRTLQRFSA 690 (753)
Q Consensus 665 TeQGEvI~~kYg~~~~A~r~LE~~~~ 690 (753)
.--||+-.=+| |..|.+.|-.++.
T Consensus 309 ~ls~eta~G~y--P~~~v~~m~~I~~ 332 (473)
T TIGR01064 309 MLSGETAKGKY--PVEAVKMMAKIAK 332 (473)
T ss_pred EEcchhhcCCC--HHHHHHHHHHHHH
Confidence 22344444444 5666666665554
No 13
>PRK08187 pyruvate kinase; Validated
Probab=91.50 E-value=0.53 Score=54.74 Aligned_cols=112 Identities=20% Similarity=0.138 Sum_probs=83.0
Q ss_pred cCcEEecCCCCcccHHHHHHHHHHcCC--CCCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCCc
Q 004448 523 FGAYIISMATAPSDVLAVELLQRECRV--KQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGK 600 (753)
Q Consensus 523 ~g~yIISmt~s~sDvL~Vl~L~k~~gl--~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~K 600 (753)
+-...+|+++++.||..+--+..+.|. ...+.|+|..||...++|.++|+..--. ...--||+|=-|=+-
T Consensus 325 vD~I~lSfV~saeDV~~l~~~L~~~~~~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~--------~~v~GImiARGDLgv 396 (493)
T PRK08187 325 ADLVGYSFVQSPGDVEALQAALAARRPDDWRKLGLVLKIETPRAVANLPELIVQAAG--------RQPFGVMIARGDLAV 396 (493)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHhCc--------CCCcEEEEEchHhhh
Confidence 445889999999999999988877652 2478899999999999999999974111 123479999999888
Q ss_pred chhHHhHhHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcch
Q 004448 601 DAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPT 646 (753)
Q Consensus 601 DgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~fFHGRGGsvgRGGGP~ 646 (753)
+-|+-. +-..|++++..|+.+|+.+..===-=.|.-..+=||
T Consensus 397 Eig~e~----~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~PT 438 (493)
T PRK08187 397 EIGFER----LAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGLPS 438 (493)
T ss_pred hcCccc----ChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCCCc
Confidence 888633 444599999999999998775322223334444454
No 14
>PRK05826 pyruvate kinase; Provisional
Probab=91.17 E-value=0.71 Score=53.41 Aligned_cols=91 Identities=14% Similarity=0.240 Sum_probs=78.3
Q ss_pred cCcEEecCCCCcccHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCCcch
Q 004448 523 FGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDA 602 (753)
Q Consensus 523 ~g~yIISmt~s~sDvL~Vl~L~k~~gl~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDg 602 (753)
+-..++||.++++|+-++--+..+.|- ..+.|++-.||.+.++|.++|++. .=-||+|-.|=+-+-
T Consensus 187 ~d~I~~sfV~saedv~~l~~~l~~~~~-~~~~iiakIEt~eav~nldeI~~~-------------~DgImIgrgDLg~el 252 (465)
T PRK05826 187 VDYIAVSFVRSAEDVEEARRLLREAGC-PHAKIIAKIERAEAVDNIDEIIEA-------------SDGIMVARGDLGVEI 252 (465)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHcCC-cCceEEEEEcCHHHHHhHHHHHHH-------------cCEEEECcchhhhhc
Confidence 445789999999999999888877763 267899999999999999999997 236999999998888
Q ss_pred hHHhHhHHHHHHHHHHHHHHHHhCCeEEE
Q 004448 603 GRLSAAWQLYKTQEELVKVAKQYGVKLTM 631 (753)
Q Consensus 603 G~laa~W~Ly~Aq~~L~~v~~~~gV~l~f 631 (753)
| .-.+..+|+++.+.|+++|..+.+
T Consensus 253 g----~~~v~~~qk~Ii~~c~~~gKpvi~ 277 (465)
T PRK05826 253 P----DEEVPGLQKKIIRKAREAGKPVIT 277 (465)
T ss_pred C----cHhHHHHHHHHHHHHHHcCCCEEE
Confidence 8 458999999999999999987764
No 15
>PLN02623 pyruvate kinase
Probab=91.01 E-value=0.8 Score=54.11 Aligned_cols=90 Identities=14% Similarity=0.249 Sum_probs=79.5
Q ss_pred cCcEEecCCCCcccHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCCcch
Q 004448 523 FGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDA 602 (753)
Q Consensus 523 ~g~yIISmt~s~sDvL~Vl~L~k~~gl~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDg 602 (753)
+--+-+|..++++||.++--+.+..|- .+.|++-.||.+.++|.++|++. .=-||+|-.|=+-.-
T Consensus 292 vD~ialSFVr~a~DV~~~r~~l~~~~~--~~~iiakIEt~eaVeNldeIl~g-------------~DgImIgrgDLgvel 356 (581)
T PLN02623 292 VDFYAVSFVKDAQVVHELKDYLKSCNA--DIHVIVKIESADSIPNLHSIITA-------------SDGAMVARGDLGAEL 356 (581)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHcCC--cceEEEEECCHHHHHhHHHHHHh-------------CCEEEECcchhhhhc
Confidence 344778999999999999999988763 67799999999999999999993 347999999999998
Q ss_pred hHHhHhHHHHHHHHHHHHHHHHhCCeEEE
Q 004448 603 GRLSAAWQLYKTQEELVKVAKQYGVKLTM 631 (753)
Q Consensus 603 G~laa~W~Ly~Aq~~L~~v~~~~gV~l~f 631 (753)
|. ..+-.+|+++.+.|+++|+.+..
T Consensus 357 g~----~~v~~~qk~Ii~~~~~~gKpviv 381 (581)
T PLN02623 357 PI----EEVPLLQEEIIRRCRSMGKPVIV 381 (581)
T ss_pred Cc----HHHHHHHHHHHHHHHHhCCCEEE
Confidence 87 78899999999999999998863
No 16
>PRK09206 pyruvate kinase; Provisional
Probab=90.73 E-value=0.84 Score=52.85 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=78.4
Q ss_pred cEEecCCCCcccHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCCcchhH
Q 004448 525 AYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGR 604 (753)
Q Consensus 525 ~yIISmt~s~sDvL~Vl~L~k~~gl~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~ 604 (753)
-+-.|+.++++||.++--+..+.|. ..+.|++-.||.+.++|.++|++. .=.||+|-.|=+-.-|
T Consensus 188 ~ia~SFVr~~~Dv~~~r~~l~~~~~-~~~~iiaKIEt~eav~nldeIl~~-------------~DgImVaRGDLgvelg- 252 (470)
T PRK09206 188 FVAASFIRKRSDVLEIREHLKAHGG-ENIQIISKIENQEGLNNFDEILEA-------------SDGIMVARGDLGVEIP- 252 (470)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHcCC-CCceEEEEECCHHHHHhHHHHHHh-------------CCEEEECcchhhhhcC-
Confidence 4567999999999999988887763 357799999999999999999997 2379999999998888
Q ss_pred HhHhHHHHHHHHHHHHHHHHhCCeEEE
Q 004448 605 LSAAWQLYKTQEELVKVAKQYGVKLTM 631 (753)
Q Consensus 605 laa~W~Ly~Aq~~L~~v~~~~gV~l~f 631 (753)
.+.+-.+|+++.+.|+++|+.+..
T Consensus 253 ---~e~vp~~qk~ii~~~~~~gkpvI~ 276 (470)
T PRK09206 253 ---VEEVIFAQKMMIEKCNRARKVVIT 276 (470)
T ss_pred ---HHHHHHHHHHHHHHHHHcCCCEEE
Confidence 788999999999999999998876
No 17
>PTZ00300 pyruvate kinase; Provisional
Probab=90.25 E-value=1 Score=51.86 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=77.5
Q ss_pred cEEecCCCCcccHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCCcchhH
Q 004448 525 AYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGR 604 (753)
Q Consensus 525 ~yIISmt~s~sDvL~Vl~L~k~~gl~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~ 604 (753)
-..+||.++++|+-++--++...| ..+.|+.-.||.+.++|.++|++. .=-||+|--|=+-.-|
T Consensus 163 ~I~~SfVrsaeDv~~vr~~l~~~~--~~~~IiaKIEt~eav~nldeI~~~-------------~DgImVaRGDLgvei~- 226 (454)
T PTZ00300 163 MIFASFIRSAEQVGEVRKALGAKG--GDIMIICKIENHQGVQNIDSIIEE-------------SDGIMVARGDLGVEIP- 226 (454)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCceEEEEECCHHHHHhHHHHHHh-------------CCEEEEecchhhhhcC-
Confidence 467899999999999998887666 367899999999999999999964 3479999999888888
Q ss_pred HhHhHHHHHHHHHHHHHHHHhCCeEEE
Q 004448 605 LSAAWQLYKTQEELVKVAKQYGVKLTM 631 (753)
Q Consensus 605 laa~W~Ly~Aq~~L~~v~~~~gV~l~f 631 (753)
.+.+-.+|+++.+.|+++|+.+..
T Consensus 227 ---~e~vp~~Qk~Ii~~~~~~gkpvI~ 250 (454)
T PTZ00300 227 ---AEKVVVAQKILISKCNVAGKPVIC 250 (454)
T ss_pred ---hHHHHHHHHHHHHHHHHcCCCEEE
Confidence 788999999999999999998875
No 18
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=89.45 E-value=0.96 Score=49.06 Aligned_cols=97 Identities=11% Similarity=0.126 Sum_probs=75.6
Q ss_pred cCcEEecCCCCcccHHHHHHHHHH----cCCC-CCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecC
Q 004448 523 FGAYIISMATAPSDVLAVELLQRE----CRVK-QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSD 597 (753)
Q Consensus 523 ~g~yIISmt~s~sDvL~Vl~L~k~----~gl~-~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSD 597 (753)
+-.+++.|++++.|+-.+.-+++. .|.. ..+.|+|+.||...+.|+.+|+.. ..+.--+++|-.|
T Consensus 86 ~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a----------~~rv~~l~~G~~D 155 (288)
T TIGR01588 86 VDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARA----------SKRLMGIALGAED 155 (288)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhc----------CCcceEEEeCHHH
Confidence 345999999999999999866654 2332 357899999999999999999842 2345668999888
Q ss_pred CCcchhHHh-Hh-HHHHHHHHHHHHHHHHhCCeE
Q 004448 598 SGKDAGRLS-AA-WQLYKTQEELVKVAKQYGVKL 629 (753)
Q Consensus 598 S~KDgG~la-a~-W~Ly~Aq~~L~~v~~~~gV~l 629 (753)
=+-|=|.-. .. .+++.+..+++..|+.+|+..
T Consensus 156 ls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~ 189 (288)
T TIGR01588 156 YVTDMKTSRSPDGTELFYARCAILHAARAAGIAA 189 (288)
T ss_pred HHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCc
Confidence 777777543 23 369999999999999999875
No 19
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=88.52 E-value=1.5 Score=46.61 Aligned_cols=97 Identities=16% Similarity=0.236 Sum_probs=72.2
Q ss_pred CcEEecCCCCcccHHHHHHHHHHc--CCC-----------------------CCCccccccCChHHHhchHHHHHHHhcc
Q 004448 524 GAYIISMATAPSDVLAVELLQREC--RVK-----------------------QPLRVVPLFEKLADLEAAPASVARLFSI 578 (753)
Q Consensus 524 g~yIISmt~s~sDvL~Vl~L~k~~--gl~-----------------------~~l~VvPLFETi~DL~~a~~im~~Ll~~ 578 (753)
..-||-|.+|+.|+-++.-.+|.. |.. ..+-|+|+.||.+.++|+++|+.
T Consensus 86 ~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~a----- 160 (249)
T TIGR02311 86 QTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREALDNLEEIAA----- 160 (249)
T ss_pred CEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHHHHHHHHHHC-----
Confidence 446777777777777777777643 211 13569999999999999999996
Q ss_pred HHHHHhhcCceEEEEeecCCCcchhHHh-HhH-HHHHHHHHHHHHHHHhCCeEEE
Q 004448 579 DWYRNRISGKQEVMIGYSDSGKDAGRLS-AAW-QLYKTQEELVKVAKQYGVKLTM 631 (753)
Q Consensus 579 p~yr~~l~~~QeVMlGYSDS~KDgG~la-a~W-~Ly~Aq~~L~~v~~~~gV~l~f 631 (753)
+.+.=-||+|-+|=+.+-|... ..| ++..|-.++.+.|+++|+..-+
T Consensus 161 ------~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi 209 (249)
T TIGR02311 161 ------VEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGI 209 (249)
T ss_pred ------CCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceee
Confidence 3456679999999888888633 233 6777888899999999987743
No 20
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=88.05 E-value=1.8 Score=50.30 Aligned_cols=90 Identities=14% Similarity=0.221 Sum_probs=77.8
Q ss_pred cCcEEecCCCCcccHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCCcch
Q 004448 523 FGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDA 602 (753)
Q Consensus 523 ~g~yIISmt~s~sDvL~Vl~L~k~~gl~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDg 602 (753)
+--+-+|+.++++||-++--+.+..| ..+.|++-.||.+.++|.++|++. .=.||+|=.|=+-.-
T Consensus 188 vD~ia~SFV~~~~di~~~r~~l~~~~--~~~~iiakIEt~~av~nldeI~~~-------------~DgImIargDLg~e~ 252 (480)
T cd00288 188 VDMIFASFVRKASDVLEIREVLGEKG--KDIKIIAKIENQEGVNNFDEILEA-------------SDGIMVARGDLGVEI 252 (480)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHhcC--CCceEEEEECCHHHHHhHHHHHHh-------------cCEEEECcchhhhhc
Confidence 44567899999999999999988776 367799999999999999999997 246999999988888
Q ss_pred hHHhHhHHHHHHHHHHHHHHHHhCCeEEE
Q 004448 603 GRLSAAWQLYKTQEELVKVAKQYGVKLTM 631 (753)
Q Consensus 603 G~laa~W~Ly~Aq~~L~~v~~~~gV~l~f 631 (753)
|. =.+-.+|+++.+.|+++|+.+..
T Consensus 253 g~----~~v~~~qk~ii~~~~~~gkpvi~ 277 (480)
T cd00288 253 PA----EEVFLAQKMLIAKCNLAGKPVIT 277 (480)
T ss_pred Ch----HHHHHHHHHHHHHHHHcCCCEEE
Confidence 83 67788999999999999987764
No 21
>PRK06354 pyruvate kinase; Provisional
Probab=87.27 E-value=1.8 Score=51.62 Aligned_cols=90 Identities=22% Similarity=0.278 Sum_probs=77.1
Q ss_pred cCcEEecCCCCcccHHHHHHHHHH-cCCCCCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCCcc
Q 004448 523 FGAYIISMATAPSDVLAVELLQRE-CRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKD 601 (753)
Q Consensus 523 ~g~yIISmt~s~sDvL~Vl~L~k~-~gl~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~KD 601 (753)
+--+-+|+.++++||.++--+..+ .| ..+.|+.-.||.+.|+|.++|++. .=-||+|-.|=+-.
T Consensus 192 vD~ia~SFVr~~~dv~~~r~~l~~~~~--~~~~iiaKIEt~eav~nldeI~~~-------------~DgImVaRGDLgve 256 (590)
T PRK06354 192 VDWIALSFVRNPSDVLEIRELIEEHNG--KHIPIIAKIEKQEAIDNIDAILEL-------------CDGLMVARGDLGVE 256 (590)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHHhcC--CCceEEEEECCHHHHHhHHHHHHh-------------cCEEEEccchhhcc
Confidence 444668999999999999888744 34 467899999999999999999987 23699999999888
Q ss_pred hhHHhHhHHHHHHHHHHHHHHHHhCCeEEE
Q 004448 602 AGRLSAAWQLYKTQEELVKVAKQYGVKLTM 631 (753)
Q Consensus 602 gG~laa~W~Ly~Aq~~L~~v~~~~gV~l~f 631 (753)
-| ...+..+|+++.+.|+++|..+..
T Consensus 257 ~g----~e~v~~~qk~ii~~~~~~gkpvI~ 282 (590)
T PRK06354 257 IP----AEEVPLLQKRLIKKANRLGKPVIT 282 (590)
T ss_pred cC----cHHHHHHHHHHHHHHHHcCCCEEE
Confidence 88 788888999999999999988774
No 22
>PRK06247 pyruvate kinase; Provisional
Probab=87.13 E-value=1.9 Score=50.02 Aligned_cols=87 Identities=20% Similarity=0.254 Sum_probs=76.6
Q ss_pred cCcEEecCCCCcccHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCCcch
Q 004448 523 FGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDA 602 (753)
Q Consensus 523 ~g~yIISmt~s~sDvL~Vl~L~k~~gl~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDg 602 (753)
+--+-+|+.++++||.++--+.. ..+.|++-.||.+.++|.++|++. .=.||+|=.|=+-.-
T Consensus 187 vD~ia~SFVr~a~Di~~~r~~l~-----~~~~iiaKIEt~eav~nldeI~~~-------------~DgImVaRGDLgve~ 248 (476)
T PRK06247 187 VDWVALSFVQRPEDVEEVRKIIG-----GRVPVMAKIEKPQAIDRLEAIVEA-------------SDAIMVARGDLGVEV 248 (476)
T ss_pred CCEEEECCCCCHHHHHHHHHHhh-----hcCeEEEEECCHHHHHhHHHHHHH-------------cCEEEEccchhcccc
Confidence 44567899999999999887763 257799999999999999999997 246999999999999
Q ss_pred hHHhHhHHHHHHHHHHHHHHHHhCCeEEE
Q 004448 603 GRLSAAWQLYKTQEELVKVAKQYGVKLTM 631 (753)
Q Consensus 603 G~laa~W~Ly~Aq~~L~~v~~~~gV~l~f 631 (753)
|+ +.+..+|+++.+.|+++|..+..
T Consensus 249 g~----~~v~~~qk~ii~~~~~~gkpvI~ 273 (476)
T PRK06247 249 PL----EQVPLIQKRIIRAARRAGKPVVV 273 (476)
T ss_pred CH----HHHHHHHHHHHHHHHHhCCCEEE
Confidence 98 89999999999999999998877
No 23
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=82.00 E-value=5.1 Score=43.18 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=56.6
Q ss_pred CCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCCcchhHHh--HhHHHHHHHHHHHHHHHHhCCe
Q 004448 551 QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLS--AAWQLYKTQEELVKVAKQYGVK 628 (753)
Q Consensus 551 ~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~la--a~W~Ly~Aq~~L~~v~~~~gV~ 628 (753)
..+-|++..||.+.++|+.+|+. +.+.--|++|=.|=+.+-|+.. -.=++-.|-+++.+.|+++|+.
T Consensus 144 ~~~~vi~qiEt~~a~~n~~~I~~-----------~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~ 212 (267)
T PRK10128 144 DSLCLLVQVESKTALDNLDEILD-----------VEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKA 212 (267)
T ss_pred cccEEEEEECCHHHHHhHHHHhC-----------CCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCe
Confidence 35778999999999999999986 4677889999988777777532 1235667899999999999998
Q ss_pred EEEe
Q 004448 629 LTMF 632 (753)
Q Consensus 629 l~fF 632 (753)
+-+|
T Consensus 213 ~G~~ 216 (267)
T PRK10128 213 AGFL 216 (267)
T ss_pred EEEc
Confidence 7543
No 24
>PRK06739 pyruvate kinase; Validated
Probab=71.65 E-value=19 Score=40.42 Aligned_cols=91 Identities=11% Similarity=0.119 Sum_probs=75.4
Q ss_pred cCcEEecCCCCcccHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCCcch
Q 004448 523 FGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDA 602 (753)
Q Consensus 523 ~g~yIISmt~s~sDvL~Vl~L~k~~gl~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDg 602 (753)
+--.-+|..++++||.++--++++.|. ..+.|+.=.||.+.++|-++|++. ---||+.=-|=
T Consensus 179 vD~ia~SFVr~~~Dv~~~r~~l~~~g~-~~~~IiaKIE~~~av~nl~eI~~~-------------sDgimVARGDL---- 240 (352)
T PRK06739 179 VDFIACSFVRKPSHIKEIRDFIQQYKE-TSPNLIAKIETMEAIENFQDICKE-------------ADGIMIARGDL---- 240 (352)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHcCC-CCCcEEEEECCHHHHHHHHHHHHh-------------cCEEEEECccc----
Confidence 334557999999999999999988764 467899999999999999999996 34688876554
Q ss_pred hHHhHhHHHHHHHHHHHHHHHHhCCeEEE
Q 004448 603 GRLSAAWQLYKTQEELVKVAKQYGVKLTM 631 (753)
Q Consensus 603 G~laa~W~Ly~Aq~~L~~v~~~~gV~l~f 631 (753)
|.=..-+.+...|+++.+.|+++|..+.+
T Consensus 241 gve~~~e~vp~~Qk~Ii~~c~~~gkPvIv 269 (352)
T PRK06739 241 GVELPYQFIPLLQKMMIQECNRTNTYVIT 269 (352)
T ss_pred ccccCHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 45556689999999999999999988764
No 25
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=70.45 E-value=9.9 Score=42.49 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=72.4
Q ss_pred cCcEEecCCCCcccHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCCcch
Q 004448 523 FGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDA 602 (753)
Q Consensus 523 ~g~yIISmt~s~sDvL~Vl~L~k~~gl~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDg 602 (753)
+--+.+|..++++||.++--+.++.| ..+.|+.=.||.+.++|-++|++. -=-||+.=-| =
T Consensus 190 vD~IalSFVrsa~dV~~lr~~l~~~~--~~~~iiaKIE~~~~v~nl~eI~~~-------------sDgimiaRGD----L 250 (348)
T PF00224_consen 190 VDFIALSFVRSAEDVKELRKILGEKG--KDIKIIAKIETKEAVENLDEILEA-------------SDGIMIARGD----L 250 (348)
T ss_dssp -SEEEETTE-SHHHHHHHHHHHTCTT--TTSEEEEEE-SHHHHHTHHHHHHH-------------SSEEEEEHHH----H
T ss_pred CCEEEecCCCchHHHHHHHHHhhhcC--cccceeeccccHHHHhhHHHHhhh-------------cCeEEEecCC----c
Confidence 44567899999999999999998877 678899999999999999999986 2367876433 4
Q ss_pred hHHhHhHHHHHHHHHHHHHHHHhCCeEEE
Q 004448 603 GRLSAAWQLYKTQEELVKVAKQYGVKLTM 631 (753)
Q Consensus 603 G~laa~W~Ly~Aq~~L~~v~~~~gV~l~f 631 (753)
|.=..-..+..+|+.+.+.|+++|..+.+
T Consensus 251 g~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ 279 (348)
T PF00224_consen 251 GVEIPFEKVPIIQKRIIKKCNAAGKPVIV 279 (348)
T ss_dssp HHHSTGGGHHHHHHHHHHHHHHHT-EEEE
T ss_pred ceeeeHHHHHHHHHHHHHHHHHhCCCeee
Confidence 55566678999999999999999998876
No 26
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=63.69 E-value=19 Score=33.54 Aligned_cols=54 Identities=13% Similarity=0.343 Sum_probs=44.1
Q ss_pred CceEEEEeecCCCcchhHHhHhHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcchhhhh
Q 004448 587 GKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAI 650 (753)
Q Consensus 587 ~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~fFHGRGGsvgRGGGP~~~ai 650 (753)
-.+-+.+||.|+.-+. |......+.|.++.++.+..++|-|-..|. |.|-|.++
T Consensus 67 v~~~~~l~~~D~~~~~------~~~~~~~~~l~~~i~~~~p~~V~t~~~~~~----gH~DH~~~ 120 (128)
T PF02585_consen 67 VENVIFLDFPDGQLPG------WSWEELVRDLEDLIREFRPDVVFTPDPDDG----GHPDHRAV 120 (128)
T ss_dssp -EEEEEEEECTTSCTC------HHHHHHHHHHHHHHHHH-ESEEEEE-STTS-----SHHHHHH
T ss_pred CceEEEeecCCCCccc------ccHHHHHHHHHHHHHHcCCCEEEECCCCCC----CcHHHHHH
Confidence 3588999999999887 999999999999999999888888876666 89988854
No 27
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=63.46 E-value=10 Score=41.26 Aligned_cols=100 Identities=20% Similarity=0.272 Sum_probs=76.0
Q ss_pred ccCcEEecCCCCcccHHHHHHHHHHcCCCCCCc-cccccCChHHHhchHHHHHHHhccHHHHHhhcCc-eEEEEeecCCC
Q 004448 522 SFGAYIISMATAPSDVLAVELLQRECRVKQPLR-VVPLFEKLADLEAAPASVARLFSIDWYRNRISGK-QEVMIGYSDSG 599 (753)
Q Consensus 522 a~g~yIISmt~s~sDvL~Vl~L~k~~gl~~~l~-VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~-QeVMlGYSDS~ 599 (753)
.+...++-++++++|+..+-.+.....-.+++. +..++||..-+.|+.+|... .++ ..+++|=.|=.
T Consensus 80 ~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a-----------~~~l~~l~~Ga~Dl~ 148 (283)
T COG2301 80 AVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAA-----------SGRLVGLAFGANDLA 148 (283)
T ss_pred CCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcC-----------ccceeeeEecHHHHH
Confidence 477889999999999999888877654444444 89999999999999999884 223 56677776655
Q ss_pred cchhHHhHh---HHHHHHHHHHHHHHHHhCCeEEEecC
Q 004448 600 KDAGRLSAA---WQLYKTQEELVKVAKQYGVKLTMFHG 634 (753)
Q Consensus 600 KDgG~laa~---W~Ly~Aq~~L~~v~~~~gV~l~fFHG 634 (753)
+|-|--.+. =.|+-+...++..|+-+|+.. |+|
T Consensus 149 ~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a--~D~ 184 (283)
T COG2301 149 ADLGARRSPDGTDPLRYARAMIVLAARAAGLAA--IDG 184 (283)
T ss_pred HHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCc--ccc
Confidence 555443332 277888889999999999887 554
No 28
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=62.44 E-value=17 Score=42.70 Aligned_cols=109 Identities=15% Similarity=0.147 Sum_probs=72.6
Q ss_pred HHHHHHcCCCCccCc-EEecCCCCcccHHHHHHHH----HHcCCC-CCCccccccCChHHHhchHHHHHHHhccHHHHHh
Q 004448 511 TFHVISELPADSFGA-YIISMATAPSDVLAVELLQ----RECRVK-QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNR 584 (753)
Q Consensus 511 ~f~~i~~~~~~a~g~-yIISmt~s~sDvL~Vl~L~----k~~gl~-~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~ 584 (753)
.|.-.+.+....-|- ++|..++|+.|+..+--+. +..|+. .++.++||.||+..+.|+.+|+..+= .+
T Consensus 172 ~fhn~~~l~~~g~gpyi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr------~r 245 (511)
T cd00480 172 FFHNAHALKARGSGPYFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELR------DH 245 (511)
T ss_pred HHHhHHHHHhcCCCcEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhcc------Cc
Confidence 344444443333443 6789999999988876443 345664 47999999999999999999997641 12
Q ss_pred hcCceEEEEeecCCCcchhH-----------------HhHhHHHHHHHHHHHHHHHHhCCeE
Q 004448 585 ISGKQEVMIGYSDSGKDAGR-----------------LSAAWQLYKTQEELVKVAKQYGVKL 629 (753)
Q Consensus 585 l~~~QeVMlGYSDS~KDgG~-----------------laa~W~Ly~Aq~~L~~v~~~~gV~l 629 (753)
.--+++|.-|=..|-|. +++-| ++-.+..++..|+++|+..
T Consensus 246 ---v~gLn~G~~Dy~~sli~~~~~~~~~~~pd~~~~~m~~~~-l~ay~~~lv~aa~a~G~~A 303 (511)
T cd00480 246 ---SAGLNCGRWDYIFSEIKTFRNHPDFVLPDRAKVTMTSPF-MRAYEKLLVKTCHRRGAHA 303 (511)
T ss_pred ---ceeeecChHHHHHHhccccccCccccCCcccccccccHH-HHHHHHHHHHHHHHcCCCc
Confidence 23355666555444432 12233 5556778999999999864
No 29
>PLN02461 Probable pyruvate kinase
Probab=61.45 E-value=33 Score=40.41 Aligned_cols=90 Identities=14% Similarity=0.213 Sum_probs=75.2
Q ss_pred cCcEEecCCCCcccHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCCcch
Q 004448 523 FGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDA 602 (753)
Q Consensus 523 ~g~yIISmt~s~sDvL~Vl~L~k~~gl~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDg 602 (753)
+--+-+|..++++||.++--+....| ..+.|+.=.||.+.++|-++|++. -=-||+.--|=+=.-
T Consensus 208 vD~ia~SFVr~a~DV~~~r~~l~~~~--~~~~IiAKIE~~~av~nl~eIi~~-------------sDgIMVARGDLGvEi 272 (511)
T PLN02461 208 IDFIALSFVRKGSDLVEVRKVLGEHA--KSILLISKVENQEGLDNFDDILAE-------------SDAFMVARGDLGMEI 272 (511)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHhCC--CCCCEEEEECCHHHHHHHHHHHHh-------------cCEEEEecccccccc
Confidence 44567899999999999999997765 367899999999999999999996 346899887765544
Q ss_pred hHHhHhHHHHHHHHHHHHHHHHhCCeEEE
Q 004448 603 GRLSAAWQLYKTQEELVKVAKQYGVKLTM 631 (753)
Q Consensus 603 G~laa~W~Ly~Aq~~L~~v~~~~gV~l~f 631 (753)
.-..+..+|+++.+.|+++|..+..
T Consensus 273 ----p~e~vp~~Qk~II~~c~~~gkPVIv 297 (511)
T PLN02461 273 ----PIEKIFLAQKMMIYKCNLAGKPVVT 297 (511)
T ss_pred ----CHHHhHHHHHHHHHHHHHcCCCeEE
Confidence 4578899999999999999988774
No 30
>PRK14725 pyruvate kinase; Provisional
Probab=60.01 E-value=38 Score=40.64 Aligned_cols=109 Identities=20% Similarity=0.192 Sum_probs=80.8
Q ss_pred cEEecCCCCcccHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCCcchhH
Q 004448 525 AYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGR 604 (753)
Q Consensus 525 ~yIISmt~s~sDvL~Vl~L~k~~gl~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~ 604 (753)
-+-+|+.++++||..+--+.++.|. ..+.|+.=.||.+.++|-++|+..-..++ .--|||.==|=+=.-|
T Consensus 447 ~ValSFVrs~~DV~~lr~~L~~~g~-~~~~IiaKIEt~~av~nL~eIl~~am~~~--------~DGIMIARGDLgvEi~- 516 (608)
T PRK14725 447 IVALSFVRSPEDVRLLLDALEKLGA-DDLGVVLKIETRRAFENLPRILLEAMRHP--------RFGVMIARGDLAVEVG- 516 (608)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCC-CCCcEEEEECCHHHHHHHHHHHHhhccCC--------CcEEEEECCccccccC-
Confidence 3567999999999999999888764 35789999999999999999998643222 2457776655444444
Q ss_pred HhHhHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcch
Q 004448 605 LSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPT 646 (753)
Q Consensus 605 laa~W~Ly~Aq~~L~~v~~~~gV~l~fFHGRGGsvgRGGGP~ 646 (753)
-..+...|+++...|+++|+.++.===-=.|.-..|=||
T Consensus 517 ---~e~lp~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PT 555 (608)
T PRK14725 517 ---FERLAEVQEEILWLCEAAHVPVIWATQVLESLAKKGLPS 555 (608)
T ss_pred ---HHHHHHHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCC
Confidence 478999999999999999998876322223344444444
No 31
>PTZ00066 pyruvate kinase; Provisional
Probab=59.45 E-value=32 Score=40.51 Aligned_cols=90 Identities=16% Similarity=0.214 Sum_probs=75.7
Q ss_pred cCcEEecCCCCcccHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCCcch
Q 004448 523 FGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDA 602 (753)
Q Consensus 523 ~g~yIISmt~s~sDvL~Vl~L~k~~gl~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDg 602 (753)
+--.-+|..++++||.++--+.++.|. .+.|+.=.||.+.++|-++|++. -=-||+.--|=
T Consensus 224 vD~IalSFVr~a~DI~~~r~~l~~~g~--~~~IiAKIE~~~av~NldeIl~~-------------sDGIMVARGDL---- 284 (513)
T PTZ00066 224 CDFIALSFVQSADDVRLCRQLLGERGR--HIKIIPKIENIEGLINFDEILAE-------------SDGIMVARGDL---- 284 (513)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHhCCC--CceEEEEECCHHHHHHHHHHHHh-------------cCEEEEEcccc----
Confidence 334678999999999999999988774 67899999999999999999996 35689887664
Q ss_pred hHHhHhHHHHHHHHHHHHHHHHhCCeEEE
Q 004448 603 GRLSAAWQLYKTQEELVKVAKQYGVKLTM 631 (753)
Q Consensus 603 G~laa~W~Ly~Aq~~L~~v~~~~gV~l~f 631 (753)
|.=..-..+..+|+++.+.|+++|..+..
T Consensus 285 GvEip~e~vp~~QK~II~~c~~~gkPVIv 313 (513)
T PTZ00066 285 GMEIPPEKVFLAQKMMISKCNVAGKPVIT 313 (513)
T ss_pred ccccChHHcchHHHHHHHHHHHhCCCEEE
Confidence 44455678999999999999999988765
No 32
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=57.93 E-value=7.9 Score=28.62 Aligned_cols=18 Identities=11% Similarity=0.088 Sum_probs=16.7
Q ss_pred HHHHHHHhccHHHHHhhc
Q 004448 569 PASVARLFSIDWYRNRIS 586 (753)
Q Consensus 569 ~~im~~Ll~~p~yr~~l~ 586 (753)
.+||+.+-.+|.||+|++
T Consensus 7 gqimk~yaadpeyrkh~~ 24 (38)
T PF02526_consen 7 GQIMKAYAADPEYRKHLN 24 (38)
T ss_pred hHHHHHHhcCHHHHHHHH
Confidence 589999999999999985
No 33
>PLN02765 pyruvate kinase
Probab=57.92 E-value=41 Score=39.73 Aligned_cols=88 Identities=9% Similarity=0.085 Sum_probs=73.5
Q ss_pred cEEecCCCCcccHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCCcchhH
Q 004448 525 AYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGR 604 (753)
Q Consensus 525 ~yIISmt~s~sDvL~Vl~L~k~~gl~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~ 604 (753)
-.-+|..++++||.++--+.+..|. ..+.|+.=.||.+.++|-++|++. ---||+.=-| =|.
T Consensus 223 ~ia~SFVr~a~DI~~~r~~l~~~g~-~~~~IiaKIE~~~av~nl~eIi~~-------------sDgIMVARGD----LGv 284 (526)
T PLN02765 223 FLSLSYTRHAEDVREAREFLSSLGL-SQTQIFAKIENVEGLTHFDEILQE-------------ADGIILSRGN----LGI 284 (526)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHHHHHh-------------cCEEEEecCc----ccc
Confidence 4568999999999999999988774 367899999999999999999996 2468887655 445
Q ss_pred HhHhHHHHHHHHHHHHHHHHhCCeEE
Q 004448 605 LSAAWQLYKTQEELVKVAKQYGVKLT 630 (753)
Q Consensus 605 laa~W~Ly~Aq~~L~~v~~~~gV~l~ 630 (753)
=..-..+..+|+++.+.|+++|..+.
T Consensus 285 Eip~e~vp~~QK~iI~~c~~~gKPVI 310 (526)
T PLN02765 285 DLPPEKVFLFQKAALYKCNMAGKPAV 310 (526)
T ss_pred ccCHHHhHHHHHHHHHHHHHhCCCeE
Confidence 55678999999999999999988764
No 34
>PRK09255 malate synthase; Validated
Probab=52.78 E-value=43 Score=39.67 Aligned_cols=95 Identities=11% Similarity=0.040 Sum_probs=67.3
Q ss_pred cEEecCCCCcccHHHHHHHHH----HcCCC-CCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCC
Q 004448 525 AYIISMATAPSDVLAVELLQR----ECRVK-QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSG 599 (753)
Q Consensus 525 ~yIISmt~s~sDvL~Vl~L~k----~~gl~-~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~ 599 (753)
.++|..++++.|+-.+--+.. ..|+. ..+.+.+|.||+..+-|+.+|+..+ |.+ ..-++.|.-|=.
T Consensus 208 ~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~a~------r~R---l~gLn~G~~Dy~ 278 (531)
T PRK09255 208 YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPAAFEMDEILYEL------REH---IAGLNCGRWDYI 278 (531)
T ss_pred EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHHHHHHHHHHhc------cCc---eEEEEcChHHhh
Confidence 788999999999987655543 45775 5799999999999999999999775 233 344667766655
Q ss_pred cchh--------HH-hH------hHHHHHH-HHHHHHHHHHhCCe
Q 004448 600 KDAG--------RL-SA------AWQLYKT-QEELVKVAKQYGVK 628 (753)
Q Consensus 600 KDgG--------~l-aa------~W~Ly~A-q~~L~~v~~~~gV~ 628 (753)
.+-+ +. .. +=.+..| +..++..|+++|+.
T Consensus 279 ~S~ik~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~ 323 (531)
T PRK09255 279 FSYIKTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAH 323 (531)
T ss_pred hhHHHHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCC
Confidence 3311 11 11 1145666 77777999999975
No 35
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=50.81 E-value=25 Score=41.29 Aligned_cols=95 Identities=12% Similarity=0.053 Sum_probs=67.1
Q ss_pred cEEecCCCCcccHHHHHHHHH----HcCCC-CCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCC
Q 004448 525 AYIISMATAPSDVLAVELLQR----ECRVK-QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSG 599 (753)
Q Consensus 525 ~yIISmt~s~sDvL~Vl~L~k----~~gl~-~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~ 599 (753)
.+.|..++++.|+-.+--+.. ..|+. .++.+.+|.||+..+-|+.+|+..+ |.+ ..-++.|.-|=.
T Consensus 187 yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~al------r~R---l~gLn~G~~Dy~ 257 (511)
T cd00727 187 YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEMDEILYEL------RDH---SAGLNCGRWDYI 257 (511)
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCHHHHHHHHHHHHhc------cCc---eEEEEcChHHHH
Confidence 678999999999886654443 45775 5799999999999999999999775 223 344666766654
Q ss_pred cchhHHh---------H------hHHHHHH-HHHHHHHHHHhCCe
Q 004448 600 KDAGRLS---------A------AWQLYKT-QEELVKVAKQYGVK 628 (753)
Q Consensus 600 KDgG~la---------a------~W~Ly~A-q~~L~~v~~~~gV~ 628 (753)
+|-|.-. . +=.+..| +..++..|+++|+.
T Consensus 258 ~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~ 302 (511)
T cd00727 258 FSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAH 302 (511)
T ss_pred HHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCC
Confidence 4432211 1 1145666 66699999999975
No 36
>KOG3831 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.78 E-value=14 Score=36.21 Aligned_cols=48 Identities=31% Similarity=0.534 Sum_probs=40.0
Q ss_pred CChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCCcchhHHhHhHHHHHHHHHHHHH
Q 004448 560 EKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKV 621 (753)
Q Consensus 560 ETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v 621 (753)
...+||+|-|.-+-..+.|-|. |||-|..---+++|++-||++++.+.
T Consensus 61 dafedlenppaav~av~kn~~l--------------s~s~k~sal~t~~wsiikakrq~l~~ 108 (196)
T KOG3831|consen 61 DAFEDLENPPAAVLAVLKNRFL--------------SDSFKESALATACWSIIKAKRQLLKN 108 (196)
T ss_pred HHHHhccCChHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3468999999887777666653 89999999999999999999998653
No 37
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=47.94 E-value=29 Score=40.78 Aligned_cols=96 Identities=10% Similarity=0.051 Sum_probs=67.9
Q ss_pred cEEecCCCCcccHHHHHHHHH----HcCCC-CCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCC
Q 004448 525 AYIISMATAPSDVLAVELLQR----ECRVK-QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSG 599 (753)
Q Consensus 525 ~yIISmt~s~sDvL~Vl~L~k----~~gl~-~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~ 599 (753)
.+.|...+++.|+-.+--+.. ..|+. .++.+.+|.||+-.+-|+++|+..+ |.+ ..-+.+|.-|=.
T Consensus 188 ~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~~A~~nm~EIa~al------r~R---l~gLn~G~~Dy~ 258 (511)
T TIGR01344 188 YFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKATVLIETLPAAFEMDEILYEL------REH---ISGLNCGRWDYI 258 (511)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCHHHHHhHHHHHHhc------cCc---eeEEEcChHHhh
Confidence 678999999999886654433 45765 5799999999999999999999875 233 344677777776
Q ss_pred ----cchh----HHhHh-H------HHHHH-HHHHHHHHHHhCCeE
Q 004448 600 ----KDAG----RLSAA-W------QLYKT-QEELVKVAKQYGVKL 629 (753)
Q Consensus 600 ----KDgG----~laa~-W------~Ly~A-q~~L~~v~~~~gV~l 629 (753)
|+-| +.... . .+..| +..++..|+++|+..
T Consensus 259 ~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~A 304 (511)
T TIGR01344 259 FSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAHA 304 (511)
T ss_pred hhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCCc
Confidence 3322 22111 1 46666 777779999999753
No 38
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=47.24 E-value=15 Score=41.72 Aligned_cols=64 Identities=23% Similarity=0.331 Sum_probs=45.6
Q ss_pred ccCcEEecCCCCcccHHHHHHHHHHcCCC----------------CCCccccccCChHHHhchHHHHHHHhccHHHHHhh
Q 004448 522 SFGAYIISMATAPSDVLAVELLQRECRVK----------------QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRI 585 (753)
Q Consensus 522 a~g~yIISmt~s~sDvL~Vl~L~k~~gl~----------------~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l 585 (753)
--|.|.||...-.-.-=.|.-|||++|+. ..|+|.|=|-++++|+.|-+++-.....-...+.+
T Consensus 343 P~GGYFIsld~~~G~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~la~~ekll 422 (425)
T PF12897_consen 343 PKGGYFISLDVLDGTAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVKLAAVEKLL 422 (425)
T ss_dssp -SBSS-EEEEESTT-HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEEecCCChHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999766666666788899999972 25999999999999999999988776665555544
No 39
>PLN02762 pyruvate kinase complex alpha subunit
Probab=46.76 E-value=90 Score=36.89 Aligned_cols=92 Identities=14% Similarity=0.177 Sum_probs=75.5
Q ss_pred cCcEEecCCCCcccHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCCcch
Q 004448 523 FGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDA 602 (753)
Q Consensus 523 ~g~yIISmt~s~sDvL~Vl~L~k~~gl~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDg 602 (753)
+--.-+|..++++||.++--+.++.|....+.|+.=.||.+.++|-++|++. -=-||+.=-|=
T Consensus 217 vD~ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~-------------sDgiMVARGDL---- 279 (509)
T PLN02762 217 VDFIAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNLEEIIRA-------------SDGAMVARGDL---- 279 (509)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHHHHHHHh-------------cCEEEEecCcc----
Confidence 4446789999999999999999887754467899999999999999999986 23588876554
Q ss_pred hHHhHhHHHHHHHHHHHHHHHHhCCeEEE
Q 004448 603 GRLSAAWQLYKTQEELVKVAKQYGVKLTM 631 (753)
Q Consensus 603 G~laa~W~Ly~Aq~~L~~v~~~~gV~l~f 631 (753)
|.=..-..+..+|++++..|+++|..+..
T Consensus 280 GvEip~e~vp~~QK~II~~c~~~gKPVIv 308 (509)
T PLN02762 280 GAQIPLEQVPSVQEKIVRLCRQLNKPVIV 308 (509)
T ss_pred ccccCHHHhHHHHHHHHHHHHHhCCCEEE
Confidence 44455678999999999999999988775
No 40
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=42.20 E-value=27 Score=36.87 Aligned_cols=123 Identities=23% Similarity=0.240 Sum_probs=87.6
Q ss_pred cccCChHHHhch-HHHHHHHhccHHHHHhhc--CceEE-EEeecCCCcchhHHhHhHHHHHHHHHHHHHHHHhCCeEEEe
Q 004448 557 PLFEKLADLEAA-PASVARLFSIDWYRNRIS--GKQEV-MIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMF 632 (753)
Q Consensus 557 PLFETi~DL~~a-~~im~~Ll~~p~yr~~l~--~~QeV-MlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~fF 632 (753)
-.+||..|+++- ..|.+.|.+++...+|+. |.--| =+||-|-++=--++.+|-+| +|.++..+.||+..+.
T Consensus 12 l~~e~~~~se~~p~~vy~~l~~D~ev~A~l~maNv~av~RlgYNDHG~vHa~Iva~~Al-----~i~~lL~~~Gv~ps~v 86 (269)
T COG3294 12 LIEETLADSEAFPKDVYELLLNDEEVQAYLKMANVMAVGRLGYNDHGPVHARIVANSAL-----AIYKLLLEKGVKPSGV 86 (269)
T ss_pred cccccchhhhhchHHHHHHHhcCHHHHHHHHHhhhhhhhhhcccCCCceeeeeccchHH-----HHHHHHHhcCCCcccc
Confidence 368999999999 589999999999999994 32111 28999999988888887665 6778888999988753
Q ss_pred --------------------cCCCCCCCCCCcchhhhhhcCCCCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHH
Q 004448 633 --------------------HGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAAT 692 (753)
Q Consensus 633 --------------------HGRGGsvgRGGGP~~~ailaqP~gsv~g~iR~TeQGEvI~~kYg~~~~A~r~LE~~~~a~ 692 (753)
|-=|-||-|--.+.|-+.+|.|- --..++--|++|.-+.+-=--++.|.
T Consensus 87 ~dg~gd~eD~~vivlLga~LHDIGnsVHRd~H~~~sa~La~~I-----------ldrIL~kiy~~~~k~~~~rsevlhAI 155 (269)
T COG3294 87 TDGVGDEEDSPVIVLLGAYLHDIGNSVHRDDHELYSAVLALDI-----------LDRILSKIYPDPEKAVRVRSEVLHAI 155 (269)
T ss_pred cccCCchhhhhHHHHHHHHHHhccchhccccHHHHhHHHhHHH-----------HHHHhhhhcCCHHHHHhHHHHHHHHh
Confidence 55566777777777777777542 11234556777766665444455554
Q ss_pred HHc
Q 004448 693 LEH 695 (753)
Q Consensus 693 l~~ 695 (753)
.-+
T Consensus 156 ~ch 158 (269)
T COG3294 156 YCH 158 (269)
T ss_pred hcc
Confidence 433
No 41
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=41.72 E-value=1.9e+02 Score=33.45 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=61.0
Q ss_pred CccchhhHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhcccccccCCCChHHHHHHHHHHHHHHhhhh---
Q 004448 174 TQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKG--- 250 (753)
Q Consensus 174 TEa~Rrtvl~~~~~I~~~L~~~~~~~~t~~e~~~~~~~L~~~i~~LW~T~~ir~~KPtv~DE~~~~l~y~~~~l~~a--- 250 (753)
++..+.=+.+-++++...|++.-...++.+...+..+.-.+....+.+--++|..+|+|.+-..-...+....+...
T Consensus 153 ~~~~~~Y~~~ql~~l~~~LEe~tG~kit~e~L~eaI~n~nr~~~~~~e~~~l~~~~P~Pisg~dl~~~~~~~~~~~~~~~ 232 (430)
T TIGR03191 153 TDARLDYVANQLHDGIEFVEKASGRKCDDELFIKAIKNEMRSTARWADICALNKAKPAPLDEKTMYSLYVLAILHKSSQW 232 (430)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCccHH
Confidence 34444556666777777777777677777665444442222222233668889999999985533333333333333
Q ss_pred HHHHHHHHHHHHHhc---CCCCCCCCCCCcccccccCCCCCCCCC
Q 004448 251 VPKFLRRVDTALKNI---GINERVPYNAPLIQFSSWMGGDRDGNP 292 (753)
Q Consensus 251 vP~l~~~l~~al~~~---~~~~~~~~~~~~i~fgSWiGGDRDGNP 292 (753)
...+++.|.+-+++. |. ...|.. . .|+ |++|-- |-|
T Consensus 233 ~~~~~~~L~~el~~r~~~G~-~~~~~e-~-~Ri--l~~g~p-~~~ 271 (430)
T TIGR03191 233 CADFMDELYEEVKDRVARGI-AAVPNE-R-CRL--MSDTQP-PWP 271 (430)
T ss_pred HHHHHHHHHHHHHHHHHcCC-CcCCCC-C-ceE--EEeCCC-CCc
Confidence 244555555555542 21 112222 2 255 888765 444
No 42
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=40.82 E-value=72 Score=39.74 Aligned_cols=95 Identities=20% Similarity=0.132 Sum_probs=72.2
Q ss_pred EEecCCCCcccHHHHHHHHHHcCCC---CCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCC---
Q 004448 526 YIISMATAPSDVLAVELLQRECRVK---QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSG--- 599 (753)
Q Consensus 526 yIISmt~s~sDvL~Vl~L~k~~gl~---~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~--- 599 (753)
.++=|-++++++.++.-.+|..|+. ..+.|.+..||++.+.++++|+.. ..-++||-.|=+
T Consensus 640 ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~-------------vDfi~IGtnDLtq~~ 706 (795)
T PRK06464 640 VMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEY-------------FDGFSIGSNDLTQLT 706 (795)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHh-------------CCEEEECchHHHHHH
Confidence 7899999999999999999988874 368899999999999999999985 233444444322
Q ss_pred -------cchhHHhH--hHHHHHHHHHHHHHHHHhCCeEEEecC
Q 004448 600 -------KDAGRLSA--AWQLYKTQEELVKVAKQYGVKLTMFHG 634 (753)
Q Consensus 600 -------KDgG~laa--~W~Ly~Aq~~L~~v~~~~gV~l~fFHG 634 (753)
..-|.+-. +=++.++-+.+++.|+++|+.+.+ .|
T Consensus 707 lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgi-cg 749 (795)
T PRK06464 707 LGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGI-CG 749 (795)
T ss_pred hCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEE-cC
Confidence 22222221 228889999999999999998876 44
No 43
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=38.26 E-value=82 Score=37.69 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=74.3
Q ss_pred cEEecCCCCcccHHHHHHHHHHcCC---------CCCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEee
Q 004448 525 AYIISMATAPSDVLAVELLQRECRV---------KQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGY 595 (753)
Q Consensus 525 ~yIISmt~s~sDvL~Vl~L~k~~gl---------~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGY 595 (753)
..++=|-++++++.++.-++++++. ...+.|.+..||+..+.+++.|++. .--++||.
T Consensus 386 ~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~-------------vDf~sIGt 452 (565)
T TIGR01417 386 RIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKE-------------VDFFSIGT 452 (565)
T ss_pred eEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhh-------------CCEEEECh
Confidence 4788999999999999999887532 1368899999999999999999883 34455555
Q ss_pred cCCCc-----c-----hhH--HhHhHHHHHHHHHHHHHHHHhCCeEEEecCCCCC
Q 004448 596 SDSGK-----D-----AGR--LSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGT 638 (753)
Q Consensus 596 SDS~K-----D-----gG~--laa~W~Ly~Aq~~L~~v~~~~gV~l~fFHGRGGs 638 (753)
-|=+- | -|+ -.-.=++.++-..+++.|+++|+.+.+.+.-+|+
T Consensus 453 nDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a~~ 507 (565)
T TIGR01417 453 NDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMAGD 507 (565)
T ss_pred hHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcCCC
Confidence 55433 1 121 1223478889999999999999998776554433
No 44
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=36.11 E-value=1e+02 Score=38.44 Aligned_cols=95 Identities=19% Similarity=0.160 Sum_probs=72.5
Q ss_pred EEecCCCCcccHHHHHHHHHHcCCC---CCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCCc--
Q 004448 526 YIISMATAPSDVLAVELLQRECRVK---QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGK-- 600 (753)
Q Consensus 526 yIISmt~s~sDvL~Vl~L~k~~gl~---~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~K-- 600 (753)
-++=|-+++.++.++.-.++..|+. ..+.|....||++.+.++++|++. ..-|+||-.|=+-
T Consensus 633 Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~-------------vDfisIGtnDLtq~~ 699 (782)
T TIGR01418 633 VMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKE-------------FDGFSIGSNDLTQLT 699 (782)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHh-------------CCEEEECchHHHHHH
Confidence 7899999999999999989988874 237899999999999999999985 3345555554332
Q ss_pred --------chhHHh--HhHHHHHHHHHHHHHHHHhCCeEEEecC
Q 004448 601 --------DAGRLS--AAWQLYKTQEELVKVAKQYGVKLTMFHG 634 (753)
Q Consensus 601 --------DgG~la--a~W~Ly~Aq~~L~~v~~~~gV~l~fFHG 634 (753)
..|++- -+=++.++-+++++.|+++|+.+.+ .|
T Consensus 700 lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgi-cg 742 (782)
T TIGR01418 700 LGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGI-CG 742 (782)
T ss_pred hCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEE-eC
Confidence 112221 1236888999999999999999876 44
No 45
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=35.23 E-value=97 Score=32.21 Aligned_cols=80 Identities=15% Similarity=0.206 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCCCCCC-----CCCHHHHH-HHHHhhhcCCCCC---CCCCCCCCHHHHH-HHHHHHHHHcCCCCccCc
Q 004448 456 HTDVIDAITKHLGIGSYR-----EWSEEKRQ-EWLLSELRGKRPL---FGSDLPKTEEIAD-VLDTFHVISELPADSFGA 525 (753)
Q Consensus 456 H~~av~el~~~~g~~~Y~-----~l~E~~r~-~~L~~eL~~~rpl---~~~~~~~s~~~~~-~l~~f~~i~~~~~~a~g~ 525 (753)
-.+.++.+....|+.+|. +||--+|+ -.|.++|-..+|. ..|+..++|..+. ++....-+..- -+.
T Consensus 106 ~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E----~~~ 181 (231)
T COG3840 106 QREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE----RKM 181 (231)
T ss_pred HHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh----hCC
Confidence 355677788888987643 34333444 3367777777774 4556678888775 44444333221 233
Q ss_pred EEecCCCCcccHHH
Q 004448 526 YIISMATAPSDVLA 539 (753)
Q Consensus 526 yIISmt~s~sDvL~ 539 (753)
-++=-|++++|+..
T Consensus 182 TllmVTH~~~Da~~ 195 (231)
T COG3840 182 TLLMVTHHPEDAAR 195 (231)
T ss_pred EEEEEeCCHHHHHH
Confidence 35556788999765
No 46
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=32.54 E-value=45 Score=38.07 Aligned_cols=73 Identities=32% Similarity=0.527 Sum_probs=39.6
Q ss_pred CCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEE----eecCCCcchhHHhHhHHHHHHHHHHHHHHHHhCC
Q 004448 552 PLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMI----GYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGV 627 (753)
Q Consensus 552 ~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMl----GYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV 627 (753)
||++|.--.+...|++.=..|. ..|+--||+ |-=.+..+ -.=+|+=|+ +|.+++++.|.
T Consensus 5 PLd~v~~~~~~~~~~~~L~~LK-----------~~GV~GVmvdvWWGiVE~~~p---~~ydWs~Y~---~l~~~vr~~GL 67 (402)
T PF01373_consen 5 PLDTVTDDNDWNALEAQLRALK-----------SAGVDGVMVDVWWGIVEGEGP---QQYDWSGYR---ELFEMVRDAGL 67 (402)
T ss_dssp -TTSSCTTSECHHHHHHHHHHH-----------HTTEEEEEEEEEHHHHTGSST---TB---HHHH---HHHHHHHHTT-
T ss_pred eeeeecCCCcHHHHHHHHHHHH-----------HcCCcEEEEEeEeeeeccCCC---CccCcHHHH---HHHHHHHHcCC
Confidence 5666665555443333322222 135666776 22222222 234788886 68888999999
Q ss_pred eEEE---ecCCCCCCCC
Q 004448 628 KLTM---FHGRGGTVGR 641 (753)
Q Consensus 628 ~l~f---FHGRGGsvgR 641 (753)
|+.. ||+=||.||-
T Consensus 68 k~~~vmsfH~cGgNvgD 84 (402)
T PF01373_consen 68 KLQVVMSFHQCGGNVGD 84 (402)
T ss_dssp EEEEEEE-S-BSSSTTS
T ss_pred eEEEEEeeecCCCCCCC
Confidence 9877 9999999885
No 47
>PF12133 Sars6: Open reading frame 6 from SARS coronavirus; InterPro: IPR022736 This entry represents small proteins, typically between 42 to 63 amino acids in length, which are uncharacterised.
Probab=31.43 E-value=12 Score=30.47 Aligned_cols=45 Identities=18% Similarity=0.354 Sum_probs=32.6
Q ss_pred HHHHHHHhCCccccccccccchHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 004448 433 FLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQE 482 (753)
Q Consensus 433 lir~v~~FGfhla~LDIRQ~S~~H~~av~el~~~~g~~~Y~~l~E~~r~~ 482 (753)
||--+++||..+-.+||---| .+..+++.+.-.+|++|||+|-++
T Consensus 15 li~im~sf~~a~~~~~i~i~s-----~~~~l~~~l~k~~ys~ld~ee~me 59 (62)
T PF12133_consen 15 LIIIMRSFRIAIWNIQIIISS-----IVRQLFNPLDKKNYSELDDEEPME 59 (62)
T ss_pred HHHHHHHHHHHHHhHHhHHHH-----HHHHHhcccccccccccCcccccc
Confidence 566789999999999986544 344556555555799999987543
No 48
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=27.70 E-value=5.8e+02 Score=25.67 Aligned_cols=78 Identities=12% Similarity=0.171 Sum_probs=44.5
Q ss_pred cCcEEecCCCCcccHHHHHHHHHHcCCCCCCccccccC----ChHHHh---chHHHHHHHhccHHHHHhhcCceEEEEee
Q 004448 523 FGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFE----KLADLE---AAPASVARLFSIDWYRNRISGKQEVMIGY 595 (753)
Q Consensus 523 ~g~yIISmt~s~sDvL~Vl~L~k~~gl~~~l~VvPLFE----Ti~DL~---~a~~im~~Ll~~p~yr~~l~~~QeVMlGY 595 (753)
+.-.|+|++.. +. +....+..|+ -++|. |-+|.. -.|+++...++. -.+...+.||+|
T Consensus 102 ~~~~ivTn~~~--~~--~~~~l~~~~l------~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~----~~~~p~~~l~ig- 166 (221)
T PRK10563 102 VPMCVVSNGPV--SK--MQHSLGKTGM------LHYFPDKLFSGYDIQRWKPDPALMFHAAEA----MNVNVENCILVD- 166 (221)
T ss_pred CCEEEEeCCcH--HH--HHHHHHhcCh------HHhCcceEeeHHhcCCCCCChHHHHHHHHH----cCCCHHHeEEEe-
Confidence 56678888643 22 2223455555 34443 334443 355666554331 122346899999
Q ss_pred cCCCcchhHHhHhHHHHHHHHHHHHHHHHhCCeEEEec
Q 004448 596 SDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFH 633 (753)
Q Consensus 596 SDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~fFH 633 (753)
||..| +..|++.|++...+.
T Consensus 167 -Ds~~d-----------------i~aA~~aG~~~i~~~ 186 (221)
T PRK10563 167 -DSSAG-----------------AQSGIAAGMEVFYFC 186 (221)
T ss_pred -CcHhh-----------------HHHHHHCCCEEEEEC
Confidence 87654 345689999988774
No 49
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=26.07 E-value=92 Score=22.64 Aligned_cols=24 Identities=25% Similarity=0.137 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhcc
Q 004448 138 IEETLKRLVVQLKKSPEEVFDALKN 162 (753)
Q Consensus 138 ~~~~l~~L~~~~g~~~e~i~~~L~~ 162 (753)
|-.-+...+ +.|+|+++|++.|..
T Consensus 5 W~~Li~eA~-~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 5 WVELIKEAK-ESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHHHH-HTT--HHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCCHHHHHHHHHh
Confidence 556677777 899999999999864
No 50
>PLN00197 beta-amylase; Provisional
Probab=24.16 E-value=72 Score=37.81 Aligned_cols=32 Identities=44% Similarity=0.838 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCC
Q 004448 608 AWQLYKTQEELVKVAKQYGVKLTM---FHGRGGTVGRG 642 (753)
Q Consensus 608 ~W~Ly~Aq~~L~~v~~~~gV~l~f---FHGRGGsvgRG 642 (753)
+|+=|+ +|.++++++|.|+.. ||.-||.||-.
T Consensus 162 dWsgY~---~L~~mvr~~GLKlq~VmSFHqCGGNVGD~ 196 (573)
T PLN00197 162 NWGGYN---ELLEMAKRHGLKVQAVMSFHQCGGNVGDS 196 (573)
T ss_pred CcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCc
Confidence 888886 688999999988765 99999998864
No 51
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=23.82 E-value=1e+03 Score=26.28 Aligned_cols=67 Identities=15% Similarity=0.267 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCeEEEecCCCCCCCCCCcchhhhh----hcC--CCCcccCceeeecccchhhh------------hcCCh
Q 004448 617 ELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAI----LSQ--PPDTIHGSLRVTVQGEVIEQ------------SFGEE 678 (753)
Q Consensus 617 ~L~~v~~~~gV~l~fFHGRGGsvgRGGGP~~~ai----laq--P~gsv~g~iR~TeQGEvI~~------------kYg~~ 678 (753)
++++.+++.|+.....|||-... +-.|+....+ ... -|=..+|.|+--++.+-+-. -++||
T Consensus 153 ~~a~~le~~G~d~i~vh~rt~~~-~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP 231 (321)
T PRK10415 153 EIAQLAEDCGIQALTIHGRTRAC-LFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRP 231 (321)
T ss_pred HHHHHHHHhCCCEEEEecCcccc-ccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCC
Confidence 56667789999999999986443 3334443322 211 23346888875555544433 24688
Q ss_pred hHHHHH
Q 004448 679 HLCFRT 684 (753)
Q Consensus 679 ~~A~r~ 684 (753)
-+....
T Consensus 232 ~if~~~ 237 (321)
T PRK10415 232 WIFREI 237 (321)
T ss_pred hHHHHH
Confidence 776554
No 52
>TIGR01766 tspaseT_teng_C transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam model pfam01385, and other proteins.
Probab=23.74 E-value=2.5e+02 Score=24.09 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=35.7
Q ss_pred eEEEEeecC--------CCcchhHHhHhHHHHHHHHHHHHHHHHhCCeEEEecCC
Q 004448 589 QEVMIGYSD--------SGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGR 635 (753)
Q Consensus 589 QeVMlGYSD--------S~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~fFHGR 635 (753)
..|.+|.=+ .+|.-...-+.|.-++-+..|.-.|+++||.+..-.-.
T Consensus 25 ~~Ivie~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~yka~~~Gi~v~~v~~~ 79 (82)
T TIGR01766 25 GTIVLEDLKNIKEMVDKKSKYLRRKLHQWSFRKLISKIKYKAEEYGIEVIEVNPA 79 (82)
T ss_pred CEEEECCccchhhhcchhhHHHHHHHHhhhHHHHHHHHHHHHHHcCCeEEEeCcc
Confidence 455555543 33445667799999999999999999999999875543
No 53
>PLN02803 beta-amylase
Probab=23.46 E-value=76 Score=37.46 Aligned_cols=35 Identities=40% Similarity=0.768 Sum_probs=28.5
Q ss_pred HhHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCCCc
Q 004448 607 AAWQLYKTQEELVKVAKQYGVKLTM---FHGRGGTVGRGGG 644 (753)
Q Consensus 607 a~W~Ly~Aq~~L~~v~~~~gV~l~f---FHGRGGsvgRGGG 644 (753)
=+|+=|+ +|.++++++|.|+.. ||.-||.||-.-.
T Consensus 141 YdWsgY~---~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~ 178 (548)
T PLN02803 141 YNWEGYA---ELVQMVQKHGLKLQVVMSFHQCGGNVGDSCS 178 (548)
T ss_pred CCcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCccc
Confidence 3788886 688999999988764 9999999887533
No 54
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=22.26 E-value=9.4e+02 Score=25.62 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=27.9
Q ss_pred ceEEEEeecCCCcchhHHhHhHHHHHHHHHHHHHHHHhCCeEEEecCCCCC
Q 004448 588 KQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGT 638 (753)
Q Consensus 588 ~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~fFHGRGGs 638 (753)
..-+.|.+|-|+...- -..+++.|+++|+++..+=+..++
T Consensus 187 ~~Dl~I~iS~sG~t~~-----------~~~~~~~ak~~g~~ii~IT~~~~s 226 (292)
T PRK11337 187 EGDVVLVVSHSGRTSD-----------VIEAVELAKKNGAKIICITNSYHS 226 (292)
T ss_pred CCCEEEEEeCCCCCHH-----------HHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3456666776664322 236788899999999999876655
No 55
>PLN02801 beta-amylase
Probab=22.00 E-value=84 Score=36.88 Aligned_cols=34 Identities=32% Similarity=0.772 Sum_probs=27.9
Q ss_pred HhHHHHHHHHHHHHHHHHhCCeEE---EecCCCCCCCCCC
Q 004448 607 AAWQLYKTQEELVKVAKQYGVKLT---MFHGRGGTVGRGG 643 (753)
Q Consensus 607 a~W~Ly~Aq~~L~~v~~~~gV~l~---fFHGRGGsvgRGG 643 (753)
=+|+=|+ +|.++++++|.|+. =||.-||.||-.-
T Consensus 71 YdWsgY~---~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~ 107 (517)
T PLN02801 71 YDWSAYR---SLFELVQSFGLKIQAIMSFHQCGGNVGDAV 107 (517)
T ss_pred cCcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 3788886 68888999998875 4999999988763
No 56
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=21.36 E-value=1.2e+03 Score=26.39 Aligned_cols=89 Identities=11% Similarity=0.142 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCCC--CccCcEEecC-CCCcccHHHHHHHHHHcCCC-------CCCccccccCChHHHhc--hH---H
Q 004448 506 ADVLDTFHVISELPA--DSFGAYIISM-ATAPSDVLAVELLQRECRVK-------QPLRVVPLFEKLADLEA--AP---A 570 (753)
Q Consensus 506 ~~~l~~f~~i~~~~~--~a~g~yIISm-t~s~sDvL~Vl~L~k~~gl~-------~~l~VvPLFETi~DL~~--a~---~ 570 (753)
.++++.++.+++..+ ...+.+|+.+ .++..|+.+.+-++++.++. .+.+=.|++.-.++... .. .
T Consensus 273 ~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~ 352 (414)
T TIGR01579 273 DDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETLRMVKEIEFSHLHIFPYSARPGTPASTMKDKVPETIKKERVK 352 (414)
T ss_pred HHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHHHHHHhCCCCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHH
Confidence 466777777776322 2333466675 89999999999999998863 24444556543221111 11 2
Q ss_pred HHHHHhc---cHHHHHhhcCceEEEEe
Q 004448 571 SVARLFS---IDWYRNRISGKQEVMIG 594 (753)
Q Consensus 571 im~~Ll~---~p~yr~~l~~~QeVMlG 594 (753)
.|..+.. ....+++++..++|++=
T Consensus 353 ~l~~~~~~~~~~~~~~~~g~~~~vlve 379 (414)
T TIGR01579 353 RLKELAEKNYQEFLKKNIGKELEVLVE 379 (414)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 2222222 23333455677888874
No 57
>PLN02905 beta-amylase
Probab=20.96 E-value=90 Score=37.59 Aligned_cols=34 Identities=35% Similarity=0.694 Sum_probs=28.0
Q ss_pred HhHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCCC
Q 004448 607 AAWQLYKTQEELVKVAKQYGVKLTM---FHGRGGTVGRGG 643 (753)
Q Consensus 607 a~W~Ly~Aq~~L~~v~~~~gV~l~f---FHGRGGsvgRGG 643 (753)
=+|+=|+ +|.++++++|.|+.. ||.-||.||-.-
T Consensus 320 YdWsgY~---~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~ 356 (702)
T PLN02905 320 YNWNGYK---RLFQMVRELKLKLQVVMSFHECGGNVGDDV 356 (702)
T ss_pred CCcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 3888886 688899999988765 999999887653
No 58
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins. Argonaut (AGO) proteins are involved in RNA-mediated post-transcriptional gene silencing [].
Probab=20.46 E-value=51 Score=30.52 Aligned_cols=7 Identities=57% Similarity=1.113 Sum_probs=4.7
Q ss_pred cCCCCCC
Q 004448 633 HGRGGTV 639 (753)
Q Consensus 633 HGRGGsv 639 (753)
|||||.-
T Consensus 9 rGRGgp~ 15 (104)
T PF12764_consen 9 RGRGGPP 15 (104)
T ss_pred cCCCCCc
Confidence 4777766
No 59
>PLN02705 beta-amylase
Probab=20.36 E-value=94 Score=37.29 Aligned_cols=32 Identities=31% Similarity=0.748 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCC
Q 004448 607 AAWQLYKTQEELVKVAKQYGVKLTM---FHGRGGTVGR 641 (753)
Q Consensus 607 a~W~Ly~Aq~~L~~v~~~~gV~l~f---FHGRGGsvgR 641 (753)
=+|+=|+ +|.++++++|.|+.. ||.-||.||-
T Consensus 302 YdWsgY~---~L~~mvr~~GLKlqvVmSFHqCGGNVGD 336 (681)
T PLN02705 302 YVWSGYR---ELFNIIREFKLKLQVVMAFHEYGGNASG 336 (681)
T ss_pred CCcHHHH---HHHHHHHHcCCeEEEEEEeeccCCCCCC
Confidence 3788886 688999999988764 9999998873
No 60
>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT).
Probab=20.31 E-value=2e+02 Score=27.98 Aligned_cols=41 Identities=27% Similarity=0.651 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCCCCCCCCCccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 004448 248 WKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIED 320 (753)
Q Consensus 248 ~~avP~l~~~l~~al~~~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VT~~vT~~~~~~~r~~~l~~y~~~l~~ 320 (753)
|-.+-.+..+|..+++++| |+-++|||..- +++.|++++++
T Consensus 91 wGSlDalIGrLraafee~G-------------------g~pe~NPf~~~-------------~vr~yLr~vr~ 131 (132)
T PF04852_consen 91 WGSLDALIGRLRAAFEEHG-------------------GHPEANPFAAR-------------AVRLYLREVRD 131 (132)
T ss_pred hccHHHHHHHHHHHHHHhC-------------------CCCCCCchhhH-------------HHHHHHHHHhc
Confidence 5556677778888887774 55569998654 45778877753
No 61
>PLN02626 malate synthase
Probab=20.25 E-value=2.7e+02 Score=33.28 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=61.1
Q ss_pred EEecCCCCcccHHHHHH----HHHHcCCC-CCCccccccCChHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCC--
Q 004448 526 YIISMATAPSDVLAVEL----LQRECRVK-QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDS-- 598 (753)
Q Consensus 526 yIISmt~s~sDvL~Vl~----L~k~~gl~-~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS-- 598 (753)
|.+..++++.|+-..-- ..+..|+. ..+.+.+|.||+...-++++|+.++ |.|+- -.+.|.=|=
T Consensus 215 fyLPKles~~Ear~w~dvf~~~E~~lGlp~GTIK~~vLIET~~A~f~meEIl~el------r~r~a---gLn~GrwDyif 285 (551)
T PLN02626 215 FYLPKMEHSREARLWNDVFEAAEKMAGIPRGSIRATVLIETLPAVFQMEEILYEL------RDHSA---GLNCGRWDYIF 285 (551)
T ss_pred EeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeccHHHHHHHHHHHHHh------hhhee---eeecChHHHHh
Confidence 56788999888765532 23456775 5899999999999999999999875 22221 122222221
Q ss_pred ----------Cc---chhHHhHhHHHHHH-HHHHHHHHHHhCCe
Q 004448 599 ----------GK---DAGRLSAAWQLYKT-QEELVKVAKQYGVK 628 (753)
Q Consensus 599 ----------~K---DgG~laa~W~Ly~A-q~~L~~v~~~~gV~ 628 (753)
++ |+..++-+...-+| .+.++.+|+++|+.
T Consensus 286 S~ik~l~~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach~rG~~ 329 (551)
T PLN02626 286 SFVKTFRAHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCHKRGVH 329 (551)
T ss_pred HHHHHhccCCCCCCCCccccchhhHHHHHHHHHHHHHHHhcCCc
Confidence 12 44444444444455 55788899999875
Done!