Query 004449
Match_columns 753
No_of_seqs 117 out of 135
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 23:37:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0980 Actin-binding protein 97.2 0.18 3.9E-06 60.9 27.4 166 528-710 319-484 (980)
2 TIGR02169 SMC_prok_A chromosom 97.2 0.1 2.2E-06 63.0 26.1 25 679-703 344-368 (1164)
3 PRK02224 chromosome segregatio 96.7 0.47 1E-05 56.8 24.9 22 548-569 475-496 (880)
4 KOG1029 Endocytic adaptor prot 96.6 0.1 2.2E-06 62.3 18.5 114 593-724 349-462 (1118)
5 PRK09039 hypothetical protein; 96.6 0.21 4.5E-06 54.8 20.0 96 556-651 54-152 (343)
6 COG1196 Smc Chromosome segrega 96.3 0.88 1.9E-05 57.0 25.4 86 624-709 809-894 (1163)
7 PRK03918 chromosome segregatio 96.3 0.81 1.8E-05 54.6 24.2 42 615-656 612-653 (880)
8 PRK03918 chromosome segregatio 96.2 1.5 3.3E-05 52.4 25.7 71 582-653 202-276 (880)
9 KOG0963 Transcription factor/C 96.1 1.7 3.6E-05 51.4 24.2 183 543-725 140-343 (629)
10 PF07888 CALCOCO1: Calcium bin 96.1 2 4.2E-05 50.4 24.7 34 681-714 353-386 (546)
11 PRK11637 AmiB activator; Provi 96.1 0.88 1.9E-05 50.8 21.5 14 553-566 45-58 (428)
12 PRK11637 AmiB activator; Provi 96.0 1.3 2.9E-05 49.3 22.4 42 645-686 175-216 (428)
13 PRK02224 chromosome segregatio 96.0 1.1 2.5E-05 53.6 23.3 19 548-566 468-486 (880)
14 PF05276 SH3BP5: SH3 domain-bi 95.9 3.1 6.7E-05 44.2 23.4 143 572-714 45-206 (239)
15 KOG0933 Structural maintenance 95.8 1.5 3.4E-05 54.0 23.0 187 552-739 745-958 (1174)
16 PF10186 Atg14: UV radiation r 95.7 0.94 2E-05 46.7 18.5 127 581-713 21-147 (302)
17 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.7 0.82 1.8E-05 43.6 16.7 68 634-721 64-131 (132)
18 PF00261 Tropomyosin: Tropomyo 95.7 1.5 3.2E-05 45.5 19.9 100 612-711 117-230 (237)
19 PF00261 Tropomyosin: Tropomyo 95.6 3.4 7.3E-05 43.0 24.1 136 586-721 63-198 (237)
20 COG1196 Smc Chromosome segrega 95.6 3.5 7.6E-05 51.8 25.8 107 615-721 807-920 (1163)
21 KOG0612 Rho-associated, coiled 95.3 3.2 7E-05 52.2 23.3 40 683-724 672-711 (1317)
22 KOG0250 DNA repair protein RAD 95.2 2.3 5E-05 52.9 21.9 153 562-722 298-452 (1074)
23 KOG0161 Myosin class II heavy 95.1 3.5 7.6E-05 54.4 24.2 185 537-724 827-1031(1930)
24 PHA02562 46 endonuclease subun 95.1 6 0.00013 44.9 23.6 23 621-643 254-276 (562)
25 PF09726 Macoilin: Transmembra 95.0 5.6 0.00012 47.9 23.8 114 613-728 543-658 (697)
26 TIGR00606 rad50 rad50. This fa 94.9 1.9 4.1E-05 54.7 20.7 21 616-636 766-786 (1311)
27 PF08317 Spc7: Spc7 kinetochor 94.8 1.1 2.3E-05 48.7 16.2 11 565-575 137-147 (325)
28 TIGR01843 type_I_hlyD type I s 94.6 4.7 0.0001 43.6 20.4 24 701-724 248-271 (423)
29 PF05701 WEMBL: Weak chloropla 94.3 9.7 0.00021 44.2 23.2 91 626-723 327-417 (522)
30 TIGR00606 rad50 rad50. This fa 94.3 4.7 0.0001 51.3 22.4 36 676-711 879-914 (1311)
31 KOG0933 Structural maintenance 94.3 4.9 0.00011 49.9 21.1 160 546-706 760-934 (1174)
32 PRK04863 mukB cell division pr 94.2 6.9 0.00015 50.8 23.6 39 685-723 442-480 (1486)
33 PF12718 Tropomyosin_1: Tropom 94.2 2.5 5.3E-05 41.4 15.5 118 589-724 2-119 (143)
34 KOG0161 Myosin class II heavy 94.2 4.7 0.0001 53.3 22.1 148 563-724 1615-1790(1930)
35 KOG0250 DNA repair protein RAD 94.1 12 0.00027 46.9 24.2 113 612-724 313-426 (1074)
36 PRK04778 septation ring format 94.0 5.8 0.00013 46.3 20.8 121 613-733 315-445 (569)
37 PF00769 ERM: Ezrin/radixin/mo 93.8 3.9 8.5E-05 43.1 17.2 110 613-722 10-126 (246)
38 PRK04863 mukB cell division pr 93.4 4.8 0.0001 52.2 20.1 140 577-723 975-1119(1486)
39 KOG4674 Uncharacterized conser 93.3 17 0.00036 48.1 24.4 118 596-714 695-820 (1822)
40 PHA02562 46 endonuclease subun 93.1 13 0.00027 42.4 21.1 9 546-554 152-160 (562)
41 KOG0980 Actin-binding protein 93.1 20 0.00043 44.4 23.3 152 547-706 357-522 (980)
42 KOG0996 Structural maintenance 93.1 11 0.00024 47.6 21.6 18 547-564 805-822 (1293)
43 COG0419 SbcC ATPase involved i 93.1 27 0.00059 42.9 25.1 101 613-713 310-417 (908)
44 TIGR01843 type_I_hlyD type I s 93.0 12 0.00025 40.5 19.8 31 690-720 244-274 (423)
45 PF15066 CAGE1: Cancer-associa 92.9 13 0.00028 43.2 20.3 118 572-695 357-502 (527)
46 PF00038 Filament: Intermediat 92.6 16 0.00035 38.7 22.9 127 589-720 171-297 (312)
47 KOG0979 Structural maintenance 92.6 27 0.00057 43.9 23.5 69 663-731 296-364 (1072)
48 PF05911 DUF869: Plant protein 92.5 9 0.0002 46.8 19.7 98 618-724 606-705 (769)
49 PF12128 DUF3584: Protein of u 92.4 12 0.00026 47.6 21.4 13 525-537 581-593 (1201)
50 PF13166 AAA_13: AAA domain 92.4 28 0.0006 41.0 24.2 106 616-724 364-470 (712)
51 TIGR02680 conserved hypothetic 92.3 11 0.00023 48.7 21.0 142 553-721 242-383 (1353)
52 PF05667 DUF812: Protein of un 92.1 8.4 0.00018 45.7 18.4 9 556-564 329-337 (594)
53 smart00787 Spc7 Spc7 kinetocho 92.0 11 0.00024 41.3 18.1 45 617-661 153-197 (312)
54 PF13514 AAA_27: AAA domain 92.0 24 0.00052 44.4 23.2 32 541-572 719-750 (1111)
55 COG1579 Zn-ribbon protein, pos 92.0 19 0.00042 38.4 22.4 40 644-683 90-129 (239)
56 PF10481 CENP-F_N: Cenp-F N-te 92.0 1.9 4.1E-05 46.8 11.8 120 540-663 3-136 (307)
57 PF13514 AAA_27: AAA domain 91.8 16 0.00034 46.0 21.3 113 535-648 138-275 (1111)
58 COG1579 Zn-ribbon protein, pos 91.8 20 0.00044 38.3 19.6 49 677-725 109-157 (239)
59 KOG0979 Structural maintenance 91.8 8.6 0.00019 47.9 18.4 68 620-694 288-355 (1072)
60 KOG0995 Centromere-associated 91.8 19 0.00041 42.7 20.3 50 615-664 287-336 (581)
61 PF10186 Atg14: UV radiation r 91.6 18 0.0004 37.4 19.6 90 615-711 70-159 (302)
62 KOG2412 Nuclear-export-signal 91.6 4.6 0.0001 47.3 15.1 128 611-744 178-311 (591)
63 TIGR02971 heterocyst_DevB ABC 91.5 12 0.00026 39.8 17.4 109 617-731 99-210 (327)
64 PF04156 IncA: IncA protein; 91.5 12 0.00025 37.2 16.2 79 616-708 110-188 (191)
65 PF04111 APG6: Autophagy prote 91.4 2.9 6.2E-05 45.6 12.9 119 587-713 16-134 (314)
66 COG0419 SbcC ATPase involved i 91.4 44 0.00095 41.2 24.5 55 666-720 310-364 (908)
67 PRK09039 hypothetical protein; 91.4 4.4 9.5E-05 44.7 14.3 100 613-712 72-178 (343)
68 KOG2891 Surface glycoprotein [ 91.3 10 0.00022 41.6 16.5 28 586-613 284-315 (445)
69 PF00038 Filament: Intermediat 91.2 23 0.0005 37.6 21.6 31 689-719 213-243 (312)
70 PF07888 CALCOCO1: Calcium bin 91.1 39 0.00085 40.1 24.7 56 592-651 180-235 (546)
71 PF05701 WEMBL: Weak chloropla 90.9 37 0.00081 39.6 24.1 73 622-694 281-353 (522)
72 PF15070 GOLGA2L5: Putative go 90.8 14 0.0003 44.2 18.5 70 645-714 141-210 (617)
73 KOG0978 E3 ubiquitin ligase in 90.8 47 0.001 40.5 23.3 91 624-714 526-616 (698)
74 PF12128 DUF3584: Protein of u 90.7 54 0.0012 41.9 24.5 50 548-597 614-666 (1201)
75 PF05667 DUF812: Protein of un 90.7 18 0.00038 43.1 19.1 48 611-658 383-430 (594)
76 PF05911 DUF869: Plant protein 90.5 4.1 8.9E-05 49.6 14.1 116 596-711 595-752 (769)
77 PF04012 PspA_IM30: PspA/IM30 90.3 8.8 0.00019 39.0 14.4 99 617-717 32-130 (221)
78 PF09730 BicD: Microtubule-ass 90.1 12 0.00025 45.6 17.1 114 601-714 20-143 (717)
79 KOG0612 Rho-associated, coiled 90.0 37 0.0008 43.5 21.5 49 605-653 509-560 (1317)
80 COG1340 Uncharacterized archae 90.0 35 0.00075 37.7 23.6 110 613-723 136-245 (294)
81 KOG0996 Structural maintenance 90.0 29 0.00063 44.2 20.6 101 613-713 424-528 (1293)
82 TIGR02977 phageshock_pspA phag 89.5 19 0.00041 37.2 16.1 103 615-717 31-138 (219)
83 PRK10246 exonuclease subunit S 89.4 70 0.0015 40.4 25.0 29 674-702 369-397 (1047)
84 PF09726 Macoilin: Transmembra 89.4 38 0.00083 41.1 20.8 152 546-714 416-581 (697)
85 TIGR01005 eps_transp_fam exopo 89.2 15 0.00033 43.8 17.4 28 615-642 237-264 (754)
86 COG4942 Membrane-bound metallo 89.1 10 0.00022 43.4 14.9 103 551-661 157-263 (420)
87 KOG4673 Transcription factor T 89.0 37 0.0008 41.3 19.7 165 543-714 575-761 (961)
88 PRK11281 hypothetical protein; 89.0 9.4 0.0002 48.4 16.0 85 571-656 85-169 (1113)
89 PF04012 PspA_IM30: PspA/IM30 89.0 11 0.00023 38.4 13.9 52 622-673 30-81 (221)
90 PRK01156 chromosome segregatio 88.9 32 0.0007 41.9 20.1 23 678-700 688-710 (895)
91 PRK04778 septation ring format 88.9 54 0.0012 38.5 21.5 168 552-726 169-375 (569)
92 PF08317 Spc7: Spc7 kinetochor 88.8 33 0.00072 37.4 18.3 56 645-700 211-266 (325)
93 KOG0994 Extracellular matrix g 88.7 27 0.00058 44.6 18.8 147 569-725 1411-1589(1758)
94 COG4942 Membrane-bound metallo 88.4 45 0.00098 38.4 19.4 59 573-645 52-110 (420)
95 PRK12704 phosphodiesterase; Pr 88.3 49 0.0011 38.8 20.2 72 614-685 81-152 (520)
96 KOG2891 Surface glycoprotein [ 88.2 20 0.00043 39.5 15.7 46 670-715 392-437 (445)
97 PF10174 Cast: RIM-binding pro 88.2 43 0.00094 41.2 20.3 134 578-711 549-697 (775)
98 TIGR03794 NHPM_micro_HlyD NHPM 87.8 37 0.0008 37.8 18.2 34 699-732 227-260 (421)
99 PRK01156 chromosome segregatio 87.7 77 0.0017 38.8 23.3 11 683-693 700-710 (895)
100 COG1842 PspA Phage shock prote 87.5 17 0.00037 38.3 14.5 104 615-720 31-134 (225)
101 PF05600 DUF773: Protein of un 87.5 14 0.0003 43.1 15.1 69 651-722 426-494 (507)
102 KOG0964 Structural maintenance 87.3 32 0.00069 43.3 18.2 124 589-712 200-348 (1200)
103 cd07627 BAR_Vps5p The Bin/Amph 87.1 39 0.00084 34.7 21.7 108 613-724 47-168 (216)
104 COG2433 Uncharacterized conser 86.8 38 0.00083 40.6 18.1 166 541-716 322-512 (652)
105 PF02841 GBP_C: Guanylate-bind 86.6 50 0.0011 35.5 22.9 35 544-578 92-126 (297)
106 TIGR00618 sbcc exonuclease Sbc 86.6 98 0.0021 38.9 24.6 106 544-650 163-281 (1042)
107 PF15619 Lebercilin: Ciliary p 86.1 45 0.00098 34.4 21.9 96 615-724 82-189 (194)
108 PF02845 CUE: CUE domain; Int 85.8 1.5 3.3E-05 34.1 4.5 35 213-247 3-37 (42)
109 smart00546 CUE Domain that may 85.8 1.5 3.3E-05 34.1 4.5 36 212-247 3-38 (43)
110 PF07246 Phlebovirus_NSM: Phle 85.7 5 0.00011 43.3 9.6 91 544-647 151-241 (264)
111 PF07058 Myosin_HC-like: Myosi 85.4 25 0.00055 39.1 14.7 71 637-707 67-137 (351)
112 PF05615 THOC7: Tho complex su 85.1 26 0.00056 33.5 13.3 96 610-719 14-115 (139)
113 PRK10361 DNA recombination pro 85.0 86 0.0019 36.7 20.7 59 616-674 54-112 (475)
114 TIGR00634 recN DNA repair prot 84.9 56 0.0012 38.2 18.4 45 682-726 343-388 (563)
115 PRK10698 phage shock protein P 84.9 31 0.00068 36.0 14.8 106 615-720 31-141 (222)
116 KOG4403 Cell surface glycoprot 84.9 23 0.00051 40.9 14.6 29 572-600 237-265 (575)
117 KOG0964 Structural maintenance 84.4 84 0.0018 39.8 19.8 74 575-655 263-347 (1200)
118 TIGR00618 sbcc exonuclease Sbc 84.2 1.3E+02 0.0027 38.0 24.9 42 679-720 373-414 (1042)
119 KOG0976 Rho/Rac1-interacting s 84.1 52 0.0011 40.8 17.6 128 588-722 49-203 (1265)
120 PF15456 Uds1: Up-regulated Du 83.5 6.5 0.00014 38.0 8.5 90 596-724 21-113 (124)
121 PF06248 Zw10: Centromere/kine 83.1 82 0.0018 37.0 18.8 104 547-656 13-116 (593)
122 KOG0240 Kinesin (SMY1 subfamil 83.0 20 0.00043 42.6 13.5 104 613-723 489-596 (607)
123 KOG0976 Rho/Rac1-interacting s 83.0 89 0.0019 39.0 18.9 134 547-707 255-408 (1265)
124 KOG0994 Extracellular matrix g 82.9 1.6E+02 0.0034 38.4 21.2 28 700-727 1725-1752(1758)
125 PF06705 SF-assemblin: SF-asse 82.8 66 0.0014 33.7 19.1 119 550-680 94-212 (247)
126 PRK10929 putative mechanosensi 82.7 66 0.0014 41.2 18.8 91 611-702 147-239 (1109)
127 TIGR01005 eps_transp_fam exopo 82.6 1.2E+02 0.0026 36.5 22.1 20 634-653 314-333 (754)
128 PF15294 Leu_zip: Leucine zipp 82.5 16 0.00035 39.8 11.8 44 682-728 212-255 (278)
129 KOG0977 Nuclear envelope prote 82.5 69 0.0015 38.1 17.6 74 577-650 103-176 (546)
130 KOG0018 Structural maintenance 82.3 22 0.00047 44.9 14.1 85 630-728 677-761 (1141)
131 KOG0946 ER-Golgi vesicle-tethe 82.3 44 0.00095 41.4 16.2 48 676-723 902-949 (970)
132 PF03962 Mnd1: Mnd1 family; I 82.3 16 0.00034 37.4 11.1 82 626-715 66-151 (188)
133 TIGR02894 DNA_bind_RsfA transc 82.2 8.8 0.00019 38.9 9.1 93 634-726 51-145 (161)
134 PRK10884 SH3 domain-containing 82.2 22 0.00048 37.0 12.4 77 610-710 88-164 (206)
135 PTZ00121 MAEBL; Provisional 82.1 1.9E+02 0.0041 38.5 22.1 26 705-730 1798-1823(2084)
136 PF10174 Cast: RIM-binding pro 82.1 1.4E+02 0.0031 37.0 24.8 151 574-724 288-490 (775)
137 PRK10246 exonuclease subunit S 82.1 1.5E+02 0.0033 37.5 25.7 32 683-714 827-858 (1047)
138 smart00787 Spc7 Spc7 kinetocho 81.8 35 0.00076 37.6 14.3 12 693-704 272-283 (312)
139 PF05483 SCP-1: Synaptonemal c 81.5 1.4E+02 0.0031 36.6 23.1 142 566-708 395-536 (786)
140 KOG4643 Uncharacterized coiled 81.5 71 0.0015 40.5 17.7 161 550-721 179-344 (1195)
141 PF15369 KIAA1328: Uncharacter 81.0 15 0.00032 40.9 11.0 93 580-718 8-101 (328)
142 TIGR03017 EpsF chain length de 81.0 98 0.0021 34.5 23.7 28 568-595 173-200 (444)
143 PF06818 Fez1: Fez1; InterPro 80.8 79 0.0017 33.3 17.2 144 553-710 15-184 (202)
144 PF13904 DUF4207: Domain of un 80.7 83 0.0018 33.7 16.3 52 673-726 179-230 (264)
145 KOG0982 Centrosomal protein Nu 80.7 1.2E+02 0.0026 35.3 20.0 77 626-709 294-370 (502)
146 TIGR03185 DNA_S_dndD DNA sulfu 80.4 1.3E+02 0.0028 35.9 19.4 21 574-594 392-412 (650)
147 PRK15136 multidrug efflux syst 80.3 19 0.00041 40.0 11.9 7 547-553 86-92 (390)
148 PTZ00266 NIMA-related protein 80.1 48 0.001 42.1 16.2 11 538-548 424-434 (1021)
149 PF14988 DUF4515: Domain of un 79.8 82 0.0018 32.8 20.9 20 545-564 15-34 (206)
150 PF04111 APG6: Autophagy prote 79.6 29 0.00063 38.0 12.8 27 631-657 45-71 (314)
151 PF10212 TTKRSYEDQ: Predicted 79.6 1.2E+02 0.0025 36.1 18.1 76 641-723 418-494 (518)
152 PF05266 DUF724: Protein of un 79.6 36 0.00078 35.1 12.7 49 615-663 138-186 (190)
153 PF07083 DUF1351: Protein of u 79.4 72 0.0016 33.2 15.0 136 585-733 47-189 (215)
154 PF01576 Myosin_tail_1: Myosin 79.3 0.61 1.3E-05 56.9 0.0 160 551-717 661-824 (859)
155 PRK09841 cryptic autophosphory 79.2 1.2E+02 0.0025 36.9 18.6 129 561-711 262-396 (726)
156 TIGR03185 DNA_S_dndD DNA sulfu 79.1 1.5E+02 0.0032 35.4 21.2 40 613-652 396-437 (650)
157 PF10481 CENP-F_N: Cenp-F N-te 78.8 58 0.0013 35.9 14.3 129 564-727 5-133 (307)
158 TIGR02680 conserved hypothetic 78.7 2.2E+02 0.0048 37.2 26.0 91 624-714 877-971 (1353)
159 KOG4673 Transcription factor T 78.4 1.2E+02 0.0025 37.4 17.7 78 626-720 715-792 (961)
160 PRK00409 recombination and DNA 78.3 81 0.0017 38.8 17.1 41 203-247 243-283 (782)
161 TIGR03017 EpsF chain length de 78.1 1.2E+02 0.0026 33.8 22.0 18 698-715 341-358 (444)
162 TIGR03319 YmdA_YtgF conserved 78.1 1.5E+02 0.0032 34.9 20.9 67 614-680 75-141 (514)
163 TIGR01010 BexC_CtrB_KpsE polys 78.1 1.1E+02 0.0024 33.4 17.9 130 565-712 169-305 (362)
164 PF10168 Nup88: Nuclear pore c 77.6 1.8E+02 0.004 35.6 22.1 30 684-713 684-713 (717)
165 PF14197 Cep57_CLD_2: Centroso 77.4 12 0.00026 32.8 7.4 52 574-653 13-64 (69)
166 PRK00106 hypothetical protein; 76.4 1.7E+02 0.0038 34.8 23.5 85 602-686 81-168 (535)
167 KOG0978 E3 ubiquitin ligase in 76.1 2E+02 0.0044 35.4 23.5 182 528-723 376-583 (698)
168 smart00502 BBC B-Box C-termina 76.1 58 0.0012 29.1 15.0 102 618-724 3-104 (127)
169 PF12325 TMF_TATA_bd: TATA ele 76.1 67 0.0014 31.1 12.6 32 628-659 15-46 (120)
170 PF10146 zf-C4H2: Zinc finger- 75.8 42 0.00091 35.6 12.2 78 572-649 7-94 (230)
171 TIGR01000 bacteriocin_acc bact 75.5 1.5E+02 0.0033 33.6 17.7 24 638-661 238-261 (457)
172 PF11932 DUF3450: Protein of u 75.2 53 0.0012 34.4 12.8 41 680-720 65-105 (251)
173 PF09731 Mitofilin: Mitochondr 75.1 1.7E+02 0.0037 34.1 23.4 42 542-583 245-286 (582)
174 PF10473 CENP-F_leu_zip: Leuci 74.8 94 0.002 30.9 14.7 43 616-658 4-46 (140)
175 PRK11281 hypothetical protein; 74.5 2.5E+02 0.0054 36.3 20.3 33 685-717 285-317 (1113)
176 KOG4674 Uncharacterized conser 74.5 3.3E+02 0.0071 37.0 24.5 143 547-696 1270-1426(1822)
177 PRK10884 SH3 domain-containing 74.5 27 0.00059 36.4 10.3 20 525-545 65-84 (206)
178 PF07798 DUF1640: Protein of u 74.3 69 0.0015 32.1 12.8 24 639-662 134-157 (177)
179 PF15397 DUF4618: Domain of un 74.3 1.4E+02 0.003 32.6 19.6 50 660-712 171-220 (258)
180 PF05557 MAD: Mitotic checkpoi 74.1 1 2.2E-05 53.6 0.0 100 570-669 118-218 (722)
181 KOG0249 LAR-interacting protei 74.0 1.5E+02 0.0031 36.8 17.0 143 554-705 107-257 (916)
182 PF05278 PEARLI-4: Arabidopsis 74.0 1.4E+02 0.0031 32.7 16.8 43 663-705 220-262 (269)
183 PRK10476 multidrug resistance 73.8 1.2E+02 0.0027 32.8 15.5 39 622-660 121-162 (346)
184 PF05278 PEARLI-4: Arabidopsis 73.7 85 0.0018 34.3 14.0 100 611-722 145-244 (269)
185 COG2433 Uncharacterized conser 73.5 32 0.0007 41.2 11.7 40 209-248 37-76 (652)
186 PF15254 CCDC14: Coiled-coil d 73.5 68 0.0015 39.6 14.4 63 586-663 343-416 (861)
187 PRK11519 tyrosine kinase; Prov 73.2 1.1E+02 0.0023 37.1 16.2 25 683-707 344-368 (719)
188 PRK10476 multidrug resistance 72.9 48 0.001 35.9 12.2 19 581-599 87-105 (346)
189 PRK10869 recombination and rep 72.5 2.1E+02 0.0045 33.9 20.0 53 672-724 328-385 (553)
190 PF09730 BicD: Microtubule-ass 72.0 75 0.0016 39.0 14.5 98 586-714 372-469 (717)
191 PF05262 Borrelia_P83: Borreli 71.8 2.1E+02 0.0045 33.8 17.5 10 693-702 325-334 (489)
192 PRK12704 phosphodiesterase; Pr 71.8 1.5E+02 0.0033 34.9 16.6 17 608-624 61-77 (520)
193 PRK00578 prfB peptide chain re 71.6 51 0.0011 37.3 12.3 41 703-749 96-136 (367)
194 PF05557 MAD: Mitotic checkpoi 71.5 20 0.00044 43.0 9.8 18 635-652 565-582 (722)
195 PF05700 BCAS2: Breast carcino 71.5 38 0.00081 35.2 10.6 71 582-655 145-215 (221)
196 PF04156 IncA: IncA protein; 71.5 1.1E+02 0.0024 30.3 15.3 28 615-642 95-122 (191)
197 TIGR02231 conserved hypothetic 71.5 42 0.0009 38.7 11.9 34 681-714 134-167 (525)
198 PF00769 ERM: Ezrin/radixin/mo 71.3 1.5E+02 0.0032 31.6 16.2 101 615-715 26-126 (246)
199 TIGR02231 conserved hypothetic 71.2 33 0.00071 39.6 11.0 35 616-650 72-106 (525)
200 PRK11519 tyrosine kinase; Prov 71.2 2.5E+02 0.0053 34.1 18.8 31 566-596 267-297 (719)
201 KOG0239 Kinesin (KAR3 subfamil 70.9 2.4E+02 0.0051 34.5 18.2 72 638-713 243-314 (670)
202 PF12808 Mto2_bdg: Micro-tubul 70.8 11 0.00024 31.8 5.3 43 614-656 3-49 (52)
203 PF08581 Tup_N: Tup N-terminal 70.8 32 0.0007 31.1 8.6 51 604-655 25-76 (79)
204 TIGR03495 phage_LysB phage lys 70.4 59 0.0013 32.2 11.0 78 589-684 21-98 (135)
205 TIGR01000 bacteriocin_acc bact 70.4 2E+02 0.0043 32.7 21.5 31 696-726 288-318 (457)
206 PF11802 CENP-K: Centromere-as 70.2 1.1E+02 0.0023 33.6 13.8 23 547-569 51-73 (268)
207 PF15070 GOLGA2L5: Putative go 69.8 2.6E+02 0.0056 33.9 24.3 112 615-730 202-317 (617)
208 cd00632 Prefoldin_beta Prefold 69.8 43 0.00094 30.7 9.5 86 553-656 4-97 (105)
209 TIGR00998 8a0101 efflux pump m 69.7 85 0.0019 33.3 13.0 38 621-658 114-154 (334)
210 PF09755 DUF2046: Uncharacteri 69.3 2E+02 0.0042 32.3 18.6 107 559-665 124-258 (310)
211 PF05529 Bap31: B-cell recepto 69.1 42 0.00091 33.7 10.0 65 637-714 119-183 (192)
212 PF06818 Fez1: Fez1; InterPro 69.1 1.3E+02 0.0029 31.7 13.8 136 581-723 25-187 (202)
213 TIGR03752 conj_TIGR03752 integ 69.1 44 0.00095 39.0 11.3 75 629-709 66-140 (472)
214 PF05335 DUF745: Protein of un 68.5 1.5E+02 0.0033 30.7 16.9 120 545-671 64-186 (188)
215 PF09789 DUF2353: Uncharacteri 68.3 1.5E+02 0.0033 33.1 14.8 52 548-599 30-98 (319)
216 TIGR00020 prfB peptide chain r 68.3 59 0.0013 36.8 11.9 42 702-749 95-136 (364)
217 KOG0971 Microtubule-associated 68.0 3.5E+02 0.0075 34.6 23.7 100 541-657 219-318 (1243)
218 KOG2991 Splicing regulator [RN 67.8 2E+02 0.0043 31.8 18.8 113 596-714 176-307 (330)
219 PF05262 Borrelia_P83: Borreli 67.6 2.2E+02 0.0047 33.7 16.5 13 698-710 320-332 (489)
220 KOG0243 Kinesin-like protein [ 67.3 2.6E+02 0.0056 35.9 17.9 109 571-697 396-509 (1041)
221 KOG0018 Structural maintenance 67.3 1.9E+02 0.004 37.2 16.5 107 615-724 220-349 (1141)
222 PF09325 Vps5: Vps5 C terminal 67.3 1.5E+02 0.0032 30.0 19.6 158 546-723 22-187 (236)
223 COG4487 Uncharacterized protei 67.0 2.6E+02 0.0056 32.8 21.6 38 559-596 39-76 (438)
224 PRK03598 putative efflux pump 67.0 83 0.0018 33.8 12.4 24 691-714 177-200 (331)
225 TIGR01541 tape_meas_lam_C phag 66.9 2.2E+02 0.0047 31.9 18.8 31 552-585 5-35 (332)
226 KOG1029 Endocytic adaptor prot 66.6 3.5E+02 0.0075 34.1 21.8 32 149-188 27-59 (1118)
227 KOG0804 Cytoplasmic Zn-finger 66.5 1.3E+02 0.0028 35.2 14.1 37 673-709 405-445 (493)
228 PRK09841 cryptic autophosphory 66.2 1.8E+02 0.0039 35.3 16.1 20 685-704 346-365 (726)
229 PF10168 Nup88: Nuclear pore c 65.7 3.3E+02 0.0072 33.5 18.4 27 690-716 637-663 (717)
230 COG4026 Uncharacterized protei 65.2 71 0.0015 34.4 11.0 74 663-736 127-223 (290)
231 TIGR03007 pepcterm_ChnLen poly 65.0 2.5E+02 0.0055 31.9 18.0 42 614-655 253-294 (498)
232 PF09766 FimP: Fms-interacting 64.7 2.4E+02 0.0052 31.6 16.3 46 677-722 107-152 (355)
233 PRK00591 prfA peptide chain re 64.4 43 0.00094 37.7 9.9 46 702-749 78-123 (359)
234 TIGR02977 phageshock_pspA phag 64.2 1.8E+02 0.004 30.1 14.6 99 622-720 31-134 (219)
235 KOG0804 Cytoplasmic Zn-finger 63.9 1.6E+02 0.0034 34.7 14.1 8 214-221 128-135 (493)
236 KOG0963 Transcription factor/C 63.8 3.4E+02 0.0074 33.1 20.2 55 615-669 203-261 (629)
237 PRK13729 conjugal transfer pil 63.8 24 0.00052 41.1 8.0 21 637-657 105-125 (475)
238 PF09802 Sec66: Preprotein tra 63.4 1.7E+02 0.0036 30.6 13.1 114 536-671 37-154 (190)
239 PF04642 DUF601: Protein of un 63.4 63 0.0014 35.3 10.4 79 623-722 208-289 (311)
240 PRK03598 putative efflux pump 63.3 76 0.0016 34.1 11.2 52 678-732 159-210 (331)
241 COG5283 Phage-related tail pro 63.2 4.5E+02 0.0098 34.4 18.9 39 615-653 99-144 (1213)
242 PF09787 Golgin_A5: Golgin sub 62.7 3.1E+02 0.0066 32.1 19.3 33 680-712 276-308 (511)
243 cd07673 F-BAR_FCHO2 The F-BAR 62.6 2.1E+02 0.0046 30.7 14.3 16 675-690 193-208 (269)
244 PF07106 TBPIP: Tat binding pr 62.4 57 0.0012 32.2 9.4 48 610-657 67-114 (169)
245 PF12777 MT: Microtubule-bindi 62.2 30 0.00064 38.1 8.1 43 613-655 219-261 (344)
246 PF04977 DivIC: Septum formati 62.1 27 0.00059 29.5 6.2 56 676-731 15-70 (80)
247 COG3206 GumC Uncharacterized p 61.7 2.4E+02 0.0053 32.0 15.3 48 618-665 295-342 (458)
248 PRK00409 recombination and DNA 61.3 1.7E+02 0.0037 36.1 14.9 101 574-681 489-594 (782)
249 TIGR01069 mutS2 MutS2 family p 61.2 3.1E+02 0.0067 33.9 17.0 41 203-247 238-278 (771)
250 PF08614 ATG16: Autophagy prot 61.0 78 0.0017 32.1 10.2 13 644-656 145-157 (194)
251 PF07926 TPR_MLP1_2: TPR/MLP1/ 61.0 1.6E+02 0.0034 28.3 15.0 68 637-704 18-85 (132)
252 PF14712 Snapin_Pallidin: Snap 60.7 99 0.0021 27.4 9.7 80 625-705 10-91 (92)
253 PF06008 Laminin_I: Laminin Do 60.5 2.1E+02 0.0045 30.2 13.7 108 617-724 26-138 (264)
254 KOG1937 Uncharacterized conser 59.8 3.6E+02 0.0077 32.0 19.9 152 554-724 344-520 (521)
255 PF05622 HOOK: HOOK protein; 59.3 3.1 6.6E-05 49.7 0.0 73 578-650 306-384 (713)
256 PF14932 HAUS-augmin3: HAUS au 59.3 51 0.0011 35.0 9.0 81 548-631 68-148 (256)
257 PF06637 PV-1: PV-1 protein (P 58.9 1.1E+02 0.0024 35.2 11.7 33 637-673 293-325 (442)
258 PF14943 MRP-S26: Mitochondria 58.9 2.2E+02 0.0047 29.2 14.5 37 698-736 123-161 (170)
259 PF14817 HAUS5: HAUS augmin-li 58.5 1.6E+02 0.0036 35.7 13.8 89 633-721 83-171 (632)
260 PF01576 Myosin_tail_1: Myosin 58.3 3.3 7.1E-05 50.8 0.0 163 550-723 576-753 (859)
261 COG1566 EmrA Multidrug resista 58.1 1E+02 0.0022 34.7 11.4 36 621-656 90-125 (352)
262 PF11932 DUF3450: Protein of u 57.4 58 0.0013 34.1 8.9 43 681-723 73-115 (251)
263 PF14362 DUF4407: Domain of un 57.3 2.7E+02 0.0059 29.8 16.8 75 573-656 78-162 (301)
264 PLN02718 Probable galacturonos 57.2 99 0.0021 37.3 11.6 83 579-661 183-268 (603)
265 PRK10929 putative mechanosensi 57.2 5.6E+02 0.012 33.4 21.7 31 686-716 266-296 (1109)
266 KOG0977 Nuclear envelope prote 57.1 4.2E+02 0.0091 31.9 16.7 12 552-563 53-64 (546)
267 PF09731 Mitofilin: Mitochondr 57.1 3.8E+02 0.0082 31.4 21.6 21 217-239 35-55 (582)
268 KOG0163 Myosin class VI heavy 57.0 4.7E+02 0.01 33.1 16.8 62 637-712 945-1007(1259)
269 KOG4657 Uncharacterized conser 56.5 2.9E+02 0.0063 29.9 16.8 64 590-654 41-104 (246)
270 PF12795 MscS_porin: Mechanose 56.2 2.6E+02 0.0056 29.2 14.7 126 587-714 52-179 (240)
271 cd07623 BAR_SNX1_2 The Bin/Amp 56.2 2.5E+02 0.0055 29.1 22.2 151 547-723 11-173 (224)
272 PF06160 EzrA: Septation ring 55.9 4.1E+02 0.009 31.5 22.9 165 552-723 165-368 (560)
273 PF09686 Plasmid_RAQPRD: Plasm 55.1 20 0.00043 32.6 4.4 45 694-742 6-50 (81)
274 TIGR00634 recN DNA repair prot 55.1 4.1E+02 0.009 31.2 20.8 27 583-609 195-221 (563)
275 KOG0243 Kinesin-like protein [ 55.0 5.9E+02 0.013 33.0 18.1 44 599-642 478-524 (1041)
276 PF07851 TMPIT: TMPIT-like pro 54.9 77 0.0017 35.5 9.7 43 596-638 3-48 (330)
277 PF07111 HCR: Alpha helical co 54.8 5.1E+02 0.011 32.2 18.7 45 543-592 61-106 (739)
278 PRK13428 F0F1 ATP synthase sub 53.9 2.6E+02 0.0057 32.2 14.0 10 593-602 38-47 (445)
279 KOG4593 Mitotic checkpoint pro 53.6 5.2E+02 0.011 32.0 21.2 17 586-602 87-103 (716)
280 PF05335 DUF745: Protein of un 53.5 2.8E+02 0.0061 28.8 18.0 72 573-658 49-124 (188)
281 PRK05431 seryl-tRNA synthetase 53.5 85 0.0018 35.8 10.0 45 589-635 4-48 (425)
282 PF05791 Bacillus_HBL: Bacillu 53.3 2.6E+02 0.0056 28.4 12.5 38 545-582 45-82 (184)
283 PF09787 Golgin_A5: Golgin sub 53.2 4.3E+02 0.0094 30.9 22.1 69 626-694 278-346 (511)
284 TIGR00414 serS seryl-tRNA synt 52.9 99 0.0022 35.2 10.4 44 589-633 4-48 (418)
285 PF15397 DUF4618: Domain of un 52.9 3.4E+02 0.0075 29.7 18.7 121 596-718 62-219 (258)
286 KOG0999 Microtubule-associated 52.6 3.9E+02 0.0085 32.5 15.0 96 614-709 106-211 (772)
287 PF11559 ADIP: Afadin- and alp 52.5 2.3E+02 0.0049 27.5 17.6 68 619-686 56-126 (151)
288 PF05622 HOOK: HOOK protein; 52.5 4.6 0.0001 48.2 0.0 30 681-710 366-395 (713)
289 PRK05771 V-type ATP synthase s 52.4 48 0.0011 39.3 8.2 15 539-553 11-25 (646)
290 PRK10093 primosomal replicatio 52.4 1.7E+02 0.0038 30.1 11.0 38 627-664 61-98 (171)
291 PF06156 DUF972: Protein of un 52.2 45 0.00098 31.6 6.4 48 615-662 8-55 (107)
292 KOG4572 Predicted DNA-binding 52.1 6.1E+02 0.013 32.3 17.6 139 576-725 886-1035(1424)
293 PF04912 Dynamitin: Dynamitin 51.6 1.7E+02 0.0037 32.7 11.9 70 555-643 295-364 (388)
294 KOG4364 Chromatin assembly fac 51.6 4.4E+02 0.0096 32.6 15.5 10 239-248 83-92 (811)
295 KOG4360 Uncharacterized coiled 51.6 1.6E+02 0.0035 35.1 11.7 63 540-602 190-262 (596)
296 PF11570 E2R135: Coiled-coil r 51.4 2.2E+02 0.0047 28.5 10.9 92 615-717 29-130 (136)
297 TIGR01069 mutS2 MutS2 family p 51.2 2.7E+02 0.0059 34.4 14.3 91 574-671 484-578 (771)
298 KOG0982 Centrosomal protein Nu 51.2 4.8E+02 0.01 30.8 19.6 32 550-581 252-283 (502)
299 TIGR02338 gimC_beta prefoldin, 51.1 1.8E+02 0.0039 27.0 10.2 66 588-653 25-98 (110)
300 PF15458 NTR2: Nineteen comple 51.1 81 0.0018 33.7 8.9 94 614-724 148-254 (254)
301 PF14257 DUF4349: Domain of un 50.8 30 0.00064 36.3 5.6 97 535-645 96-192 (262)
302 KOG3119 Basic region leucine z 50.4 75 0.0016 34.2 8.6 60 639-719 197-256 (269)
303 PF08172 CASP_C: CASP C termin 50.3 82 0.0018 33.8 8.8 100 617-722 1-130 (248)
304 TIGR02473 flagell_FliJ flagell 50.2 2.2E+02 0.0047 26.6 13.2 36 619-654 17-52 (141)
305 TIGR03752 conj_TIGR03752 integ 50.2 1.5E+02 0.0032 34.9 11.2 19 547-565 58-76 (472)
306 COG4026 Uncharacterized protei 50.0 69 0.0015 34.5 8.0 53 588-651 132-185 (290)
307 KOG4643 Uncharacterized coiled 49.8 7.1E+02 0.015 32.4 19.1 79 618-696 519-603 (1195)
308 PF02050 FliJ: Flagellar FliJ 49.2 1.8E+02 0.004 25.4 14.5 28 572-599 4-31 (123)
309 PF14662 CCDC155: Coiled-coil 49.1 3.5E+02 0.0075 28.6 20.1 140 551-710 39-190 (193)
310 PF12925 APP_E2: E2 domain of 48.9 1.1E+02 0.0024 32.0 9.2 65 598-662 24-107 (193)
311 PF07798 DUF1640: Protein of u 48.8 2.4E+02 0.0053 28.3 11.4 83 638-720 53-149 (177)
312 cd07675 F-BAR_FNBP1L The F-BAR 48.7 3.9E+02 0.0084 29.0 18.0 47 560-606 68-122 (252)
313 COG3883 Uncharacterized protei 48.1 1.2E+02 0.0025 33.3 9.5 59 666-724 40-98 (265)
314 PF02050 FliJ: Flagellar FliJ 47.7 1.9E+02 0.0042 25.3 14.8 31 622-652 5-35 (123)
315 KOG0971 Microtubule-associated 47.5 7.4E+02 0.016 32.0 20.6 151 562-721 265-432 (1243)
316 PLN02910 polygalacturonate 4-a 47.4 1.7E+02 0.0036 35.7 11.4 83 579-661 215-300 (657)
317 PTZ00121 MAEBL; Provisional 47.3 9E+02 0.02 32.9 23.7 10 524-533 1073-1082(2084)
318 PRK11448 hsdR type I restricti 47.3 1.3E+02 0.0028 38.7 11.2 37 678-714 177-213 (1123)
319 PF09744 Jnk-SapK_ap_N: JNK_SA 47.2 3.2E+02 0.007 27.7 12.5 101 578-681 41-148 (158)
320 PF12718 Tropomyosin_1: Tropom 47.2 2.9E+02 0.0064 27.2 17.9 65 640-711 77-141 (143)
321 PRK11578 macrolide transporter 46.9 94 0.002 34.0 8.8 61 581-645 114-174 (370)
322 PF04568 IATP: Mitochondrial A 46.9 82 0.0018 29.8 7.2 36 667-708 64-99 (100)
323 PF15035 Rootletin: Ciliary ro 46.5 3.5E+02 0.0075 27.9 13.9 93 622-714 60-156 (182)
324 KOG0239 Kinesin (KAR3 subfamil 46.4 6.5E+02 0.014 31.0 17.3 86 623-718 224-309 (670)
325 PF10234 Cluap1: Clusterin-ass 46.1 3.7E+02 0.008 29.5 12.8 111 576-707 119-240 (267)
326 KOG2077 JNK/SAPK-associated pr 46.0 89 0.0019 37.6 8.7 67 617-707 313-379 (832)
327 PF01486 K-box: K-box region; 45.6 80 0.0017 28.8 6.8 69 584-652 16-98 (100)
328 PF06476 DUF1090: Protein of u 45.5 2.1E+02 0.0045 27.5 9.8 68 641-714 22-92 (115)
329 PF12252 SidE: Dot/Icm substra 45.2 8.5E+02 0.018 32.0 18.2 64 625-688 1240-1305(1439)
330 COG2882 FliJ Flagellar biosynt 45.2 3.4E+02 0.0074 27.4 13.4 93 607-714 8-100 (148)
331 KOG1821 Uncharacterized conser 45.0 46 0.001 38.3 6.1 93 604-704 554-652 (662)
332 PF13747 DUF4164: Domain of un 44.9 2.5E+02 0.0054 25.8 10.4 51 632-682 35-85 (89)
333 PRK12705 hypothetical protein; 44.8 6.1E+02 0.013 30.2 22.3 31 616-646 85-115 (508)
334 TIGR01730 RND_mfp RND family e 44.7 1.4E+02 0.003 31.1 9.3 28 692-719 102-129 (322)
335 KOG4807 F-actin binding protei 44.6 5.8E+02 0.013 29.9 18.9 18 552-569 295-312 (593)
336 TIGR02971 heterocyst_DevB ABC 44.5 4.2E+02 0.0091 28.3 17.2 29 692-720 179-207 (327)
337 KOG0288 WD40 repeat protein Ti 44.4 5.3E+02 0.012 30.3 14.2 22 558-579 20-41 (459)
338 cd07647 F-BAR_PSTPIP The F-BAR 44.4 3.9E+02 0.0085 27.9 15.8 14 598-611 107-120 (239)
339 TIGR02449 conserved hypothetic 44.2 1.7E+02 0.0037 25.8 8.2 53 628-708 6-58 (65)
340 TIGR03545 conserved hypothetic 43.8 1.6E+02 0.0035 35.0 10.6 16 219-234 22-37 (555)
341 TIGR01690 ICE_RAQPRD integrati 43.7 37 0.00081 31.8 4.4 40 695-736 20-59 (94)
342 KOG0247 Kinesin-like protein [ 43.7 2.4E+02 0.0052 35.0 12.0 54 559-612 513-570 (809)
343 PF12795 MscS_porin: Mechanose 43.5 3.5E+02 0.0075 28.2 12.0 62 664-725 78-139 (240)
344 PF10883 DUF2681: Protein of u 43.4 89 0.0019 29.0 6.7 38 684-721 29-66 (87)
345 KOG4657 Uncharacterized conser 43.2 4.5E+02 0.0098 28.6 12.6 64 579-642 50-113 (246)
346 PF15358 TSKS: Testis-specific 43.1 1.5E+02 0.0032 34.6 9.6 110 539-654 101-232 (558)
347 PF05529 Bap31: B-cell recepto 43.0 1.4E+02 0.003 30.0 8.7 24 573-596 118-141 (192)
348 COG4372 Uncharacterized protei 42.5 6.2E+02 0.013 29.6 18.1 127 586-726 80-206 (499)
349 KOG3156 Uncharacterized membra 42.3 1.4E+02 0.003 31.9 8.7 24 639-662 177-200 (220)
350 cd00890 Prefoldin Prefoldin is 42.2 2.7E+02 0.0058 25.6 9.8 36 621-656 86-121 (129)
351 PF08429 PLU-1: PLU-1-like pro 42.1 4.8E+02 0.01 28.2 13.4 134 576-724 141-275 (335)
352 cd09236 V_AnPalA_UmRIM20_like 41.9 5.3E+02 0.012 28.7 18.5 104 591-694 100-218 (353)
353 PF10211 Ax_dynein_light: Axon 41.8 4.1E+02 0.0088 27.3 12.8 37 563-599 103-139 (189)
354 PF03962 Mnd1: Mnd1 family; I 41.5 2.5E+02 0.0055 28.8 10.3 29 640-668 66-94 (188)
355 TIGR01010 BexC_CtrB_KpsE polys 41.2 5.2E+02 0.011 28.4 15.5 21 635-655 213-233 (362)
356 PF04576 Zein-binding: Zein-bi 41.2 2.3E+02 0.005 26.8 9.0 22 631-652 72-93 (94)
357 PRK11578 macrolide transporter 41.2 2.4E+02 0.0052 30.9 10.8 20 618-637 109-128 (370)
358 KOG0962 DNA repair protein RAD 40.9 1E+03 0.022 31.7 21.5 26 544-569 774-799 (1294)
359 PRK10636 putative ABC transpor 40.8 81 0.0018 37.5 7.7 52 675-726 567-625 (638)
360 PF06005 DUF904: Protein of un 40.7 2.7E+02 0.0058 24.9 9.9 31 626-656 8-38 (72)
361 PRK13729 conjugal transfer pil 40.6 87 0.0019 36.7 7.6 46 581-633 77-122 (475)
362 PRK12705 hypothetical protein; 40.3 7.1E+02 0.015 29.7 17.5 42 613-654 75-116 (508)
363 KOG0962 DNA repair protein RAD 40.2 1E+03 0.023 31.6 21.6 15 638-652 880-894 (1294)
364 PF09304 Cortex-I_coil: Cortex 40.1 3.5E+02 0.0077 26.1 12.1 77 639-723 12-89 (107)
365 PF04849 HAP1_N: HAP1 N-termin 39.9 5.9E+02 0.013 28.6 16.5 126 590-725 167-295 (306)
366 PRK09578 periplasmic multidrug 39.7 1.6E+02 0.0035 32.5 9.3 43 684-726 131-173 (385)
367 KOG0240 Kinesin (SMY1 subfamil 39.4 7.9E+02 0.017 30.0 15.8 72 645-725 472-543 (607)
368 PLN02769 Probable galacturonos 39.3 98 0.0021 37.5 8.0 78 582-659 203-283 (629)
369 PRK13169 DNA replication intia 39.2 56 0.0012 31.3 4.9 40 615-654 8-47 (110)
370 PF12037 DUF3523: Domain of un 39.1 5.8E+02 0.012 28.3 13.8 18 683-700 104-121 (276)
371 PF14357 DUF4404: Domain of un 38.8 46 0.00099 30.2 4.1 52 586-644 3-65 (85)
372 PF06160 EzrA: Septation ring 38.5 7.5E+02 0.016 29.4 21.3 120 613-732 311-440 (560)
373 PRK07720 fliJ flagellar biosyn 38.2 3.7E+02 0.008 25.8 13.0 79 621-714 22-100 (146)
374 KOG3612 PHD Zn-finger protein 38.2 1E+02 0.0022 36.8 7.7 84 632-740 449-543 (588)
375 KOG1962 B-cell receptor-associ 38.2 2.1E+02 0.0045 30.6 9.3 15 631-645 113-127 (216)
376 PF10212 TTKRSYEDQ: Predicted 38.1 6.8E+02 0.015 30.1 14.2 88 621-712 419-514 (518)
377 COG1842 PspA Phage shock prote 38.1 5.2E+02 0.011 27.5 17.0 36 683-718 111-146 (225)
378 TIGR00019 prfA peptide chain r 38.0 2.3E+02 0.0051 32.2 10.3 27 549-575 8-34 (360)
379 COG4717 Uncharacterized conser 38.0 9.9E+02 0.021 30.7 19.7 24 542-565 565-588 (984)
380 PF05483 SCP-1: Synaptonemal c 37.9 9E+02 0.02 30.2 22.4 25 690-714 659-683 (786)
381 PF09728 Taxilin: Myosin-like 37.9 6E+02 0.013 28.1 19.8 105 546-656 153-271 (309)
382 TIGR00019 prfA peptide chain r 37.4 2.6E+02 0.0056 31.8 10.5 48 701-750 77-124 (360)
383 PF01920 Prefoldin_2: Prefoldi 37.3 3E+02 0.0064 24.4 9.6 78 578-655 10-95 (106)
384 KOG1962 B-cell receptor-associ 37.3 3.1E+02 0.0067 29.3 10.4 55 599-653 153-210 (216)
385 PF10158 LOH1CR12: Tumour supp 37.2 3.2E+02 0.007 26.8 9.9 61 660-720 37-98 (131)
386 PRK15030 multidrug efflux syst 37.1 1.8E+02 0.004 32.3 9.3 52 676-727 125-176 (397)
387 PF11559 ADIP: Afadin- and alp 37.0 4E+02 0.0086 25.8 16.7 95 614-708 37-131 (151)
388 TIGR00999 8a0102 Membrane Fusi 37.0 1.3E+02 0.0027 30.8 7.5 50 676-725 38-87 (265)
389 smart00224 GGL G protein gamma 36.8 29 0.00062 29.8 2.4 53 683-741 4-62 (63)
390 PRK10865 protein disaggregatio 36.8 4E+02 0.0086 33.3 12.8 21 638-658 412-432 (857)
391 PF05377 FlaC_arch: Flagella a 36.6 72 0.0016 27.4 4.6 34 616-656 1-34 (55)
392 PF12777 MT: Microtubule-bindi 36.4 2.8E+02 0.0061 30.6 10.5 12 682-693 295-306 (344)
393 PF02403 Seryl_tRNA_N: Seryl-t 36.3 3.4E+02 0.0073 24.7 9.7 67 661-727 26-102 (108)
394 TIGR03007 pepcterm_ChnLen poly 36.0 7.1E+02 0.015 28.4 22.3 26 568-593 163-188 (498)
395 PF15619 Lebercilin: Ciliary p 35.9 5.2E+02 0.011 26.9 16.9 52 613-664 87-146 (194)
396 PF07445 priB_priC: Primosomal 35.8 3.2E+02 0.0069 27.7 9.9 56 631-686 65-120 (173)
397 PF08397 IMD: IRSp53/MIM homol 35.5 5.2E+02 0.011 26.7 20.0 147 548-712 58-209 (219)
398 PF14662 CCDC155: Coiled-coil 35.4 5.6E+02 0.012 27.1 19.6 18 552-569 5-22 (193)
399 KOG1853 LIS1-interacting prote 35.4 6.6E+02 0.014 27.9 21.2 99 548-650 20-126 (333)
400 PF09755 DUF2046: Uncharacteri 35.3 7E+02 0.015 28.1 21.8 128 589-739 86-216 (310)
401 PF08614 ATG16: Autophagy prot 35.2 93 0.002 31.5 6.1 94 617-717 83-176 (194)
402 PF14197 Cep57_CLD_2: Centroso 35.0 3.2E+02 0.0069 24.1 8.7 43 620-662 3-45 (69)
403 PRK05689 fliJ flagellar biosyn 35.0 4.1E+02 0.0089 25.4 16.4 11 671-681 105-115 (147)
404 PF02403 Seryl_tRNA_N: Seryl-t 34.8 3.6E+02 0.0077 24.6 9.7 49 589-638 4-52 (108)
405 PF14555 UBA_4: UBA-like domai 34.7 59 0.0013 25.5 3.7 33 215-248 4-36 (43)
406 PLN02678 seryl-tRNA synthetase 34.6 3.3E+02 0.0071 31.8 11.0 47 589-636 4-54 (448)
407 PF02994 Transposase_22: L1 tr 34.4 1.3E+02 0.0028 33.9 7.6 47 678-724 144-190 (370)
408 PF10805 DUF2730: Protein of u 34.4 2.1E+02 0.0046 26.7 7.9 41 613-653 47-89 (106)
409 PF05008 V-SNARE: Vesicle tran 34.4 2E+02 0.0044 24.7 7.3 26 685-710 54-79 (79)
410 TIGR03495 phage_LysB phage lys 34.2 4.3E+02 0.0093 26.3 10.2 35 685-719 47-81 (135)
411 PF09304 Cortex-I_coil: Cortex 34.0 4.5E+02 0.0096 25.5 14.2 41 619-659 41-81 (107)
412 PF14932 HAUS-augmin3: HAUS au 34.0 4.7E+02 0.01 27.9 11.4 99 584-685 72-190 (256)
413 PRK15178 Vi polysaccharide exp 33.8 5.5E+02 0.012 30.1 12.5 103 551-658 222-338 (434)
414 PLN02678 seryl-tRNA synthetase 33.7 2.8E+02 0.0061 32.3 10.3 31 697-727 76-106 (448)
415 PF05769 DUF837: Protein of un 33.6 5.5E+02 0.012 26.4 14.1 38 615-653 135-177 (181)
416 PF03961 DUF342: Protein of un 33.5 2.8E+02 0.0061 31.6 10.2 27 156-182 28-55 (451)
417 PF10018 Med4: Vitamin-D-recep 33.5 1.8E+02 0.0038 29.6 7.8 40 589-628 21-63 (188)
418 PF13166 AAA_13: AAA domain 33.4 9E+02 0.019 28.8 23.0 36 621-656 362-397 (712)
419 PRK09973 putative outer membra 33.3 96 0.0021 28.7 5.3 40 623-662 25-64 (85)
420 PRK11147 ABC transporter ATPas 33.2 1E+02 0.0023 36.4 7.0 52 675-726 572-629 (635)
421 TIGR03794 NHPM_micro_HlyD NHPM 33.0 7.4E+02 0.016 27.8 18.8 26 691-716 226-251 (421)
422 KOG0288 WD40 repeat protein Ti 33.0 8.8E+02 0.019 28.6 18.1 33 563-595 10-42 (459)
423 PF05384 DegS: Sensor protein 32.7 5.5E+02 0.012 26.1 17.9 114 609-722 21-135 (159)
424 PF06632 XRCC4: DNA double-str 32.7 7.4E+02 0.016 28.1 13.0 25 694-718 189-213 (342)
425 PF05700 BCAS2: Breast carcino 32.6 3.9E+02 0.0085 27.9 10.3 69 638-706 145-217 (221)
426 PLN02829 Probable galacturonos 32.2 3.8E+02 0.0082 32.8 11.1 81 581-661 203-286 (639)
427 KOG4438 Centromere-associated 32.1 5.4E+02 0.012 30.3 11.9 96 545-650 303-398 (446)
428 COG1340 Uncharacterized archae 32.0 7.7E+02 0.017 27.6 22.5 18 639-656 134-151 (294)
429 TIGR01554 major_cap_HK97 phage 32.0 1.6E+02 0.0035 32.5 7.8 18 552-569 3-20 (378)
430 PF09738 DUF2051: Double stran 31.9 5.2E+02 0.011 28.8 11.5 85 552-654 81-165 (302)
431 PF13094 CENP-Q: CENP-Q, a CEN 31.9 2.6E+02 0.0057 27.4 8.5 35 680-714 36-70 (160)
432 cd03190 GST_C_ECM4_like GST_C 31.7 1E+02 0.0022 29.2 5.5 25 558-582 2-26 (142)
433 PF05769 DUF837: Protein of un 31.7 5.9E+02 0.013 26.2 17.4 83 629-714 63-150 (181)
434 KOG2264 Exostosin EXT1L [Signa 31.7 2.9E+02 0.0062 33.6 9.9 72 612-718 76-147 (907)
435 TIGR03545 conserved hypothetic 31.6 2.6E+02 0.0056 33.4 9.7 35 679-713 213-247 (555)
436 PRK00888 ftsB cell division pr 31.5 1.7E+02 0.0037 27.4 6.8 54 678-731 27-80 (105)
437 PRK00578 prfB peptide chain re 31.3 2.3E+02 0.005 32.2 8.9 25 551-575 26-50 (367)
438 TIGR00570 cdk7 CDK-activating 31.2 5.6E+02 0.012 28.8 11.6 34 544-578 100-135 (309)
439 PF07889 DUF1664: Protein of u 31.1 3.7E+02 0.0081 26.4 9.1 83 567-649 25-123 (126)
440 PRK06991 ferredoxin; Provision 31.1 1.8E+02 0.0039 31.7 7.7 33 565-602 142-174 (270)
441 KOG4715 SWI/SNF-related matrix 30.9 3.4E+02 0.0074 30.8 9.8 69 630-698 229-306 (410)
442 cd04776 HTH_GnyR Helix-Turn-He 30.8 2.4E+02 0.0051 26.7 7.6 40 683-722 78-117 (118)
443 PF09763 Sec3_C: Exocyst compl 30.6 4.1E+02 0.0089 32.1 11.4 92 599-711 7-98 (701)
444 PF05008 V-SNARE: Vesicle tran 30.5 2.3E+02 0.005 24.3 7.0 11 617-627 41-51 (79)
445 PF13805 Pil1: Eisosome compon 30.3 7.8E+02 0.017 27.2 13.4 86 637-722 97-188 (271)
446 PRK00591 prfA peptide chain re 30.1 4.2E+02 0.009 30.2 10.6 31 548-578 6-36 (359)
447 KOG3478 Prefoldin subunit 6, K 30.1 5.4E+02 0.012 25.3 12.8 41 669-709 74-114 (120)
448 PF14193 DUF4315: Domain of un 30.0 1.1E+02 0.0025 27.9 5.2 32 689-720 5-36 (83)
449 KOG3915 Transcription regulato 29.8 4.8E+02 0.01 31.1 11.1 52 674-725 544-596 (641)
450 cd09235 V_Alix Middle V-domain 29.6 8.1E+02 0.017 27.1 18.9 104 591-695 98-215 (339)
451 PF03904 DUF334: Domain of unk 29.6 7.6E+02 0.016 26.8 16.8 114 576-709 22-137 (230)
452 PF06120 Phage_HK97_TLTM: Tail 29.5 5.1E+02 0.011 29.0 10.9 72 648-721 39-110 (301)
453 PRK09859 multidrug efflux syst 29.5 3E+02 0.0065 30.5 9.3 49 679-727 124-172 (385)
454 PF08826 DMPK_coil: DMPK coile 29.5 1.8E+02 0.0039 25.4 6.0 39 618-656 21-59 (61)
455 PF13851 GAS: Growth-arrest sp 29.4 6.6E+02 0.014 26.1 21.8 101 551-653 26-131 (201)
456 PF06785 UPF0242: Uncharacteri 29.1 9.4E+02 0.02 27.7 20.0 138 572-711 69-220 (401)
457 KOG4572 Predicted DNA-binding 29.1 1.3E+03 0.029 29.6 15.9 52 639-706 1055-1106(1424)
458 KOG2668 Flotillins [Intracellu 28.9 9.7E+02 0.021 27.8 14.3 46 577-627 198-243 (428)
459 TIGR01730 RND_mfp RND family e 28.3 1.4E+02 0.0031 31.0 6.3 11 587-597 78-88 (322)
460 PF01496 V_ATPase_I: V-type AT 28.1 2.6E+02 0.0055 34.1 9.2 45 550-595 69-113 (759)
461 PLN02320 seryl-tRNA synthetase 27.6 4.6E+02 0.01 31.2 10.8 24 689-712 134-157 (502)
462 PRK05892 nucleoside diphosphat 27.5 1.3E+02 0.0029 30.0 5.7 17 688-704 14-30 (158)
463 PRK11556 multidrug efflux syst 27.1 3.4E+02 0.0073 30.7 9.4 40 686-725 157-196 (415)
464 PRK05689 fliJ flagellar biosyn 26.9 5.6E+02 0.012 24.5 13.0 78 622-714 23-100 (147)
465 PLN03229 acetyl-coenzyme A car 26.9 1.4E+03 0.03 28.9 14.8 12 698-709 694-705 (762)
466 TIGR02894 DNA_bind_RsfA transc 26.9 4.7E+02 0.01 26.9 9.3 25 690-714 102-126 (161)
467 PF11727 ISG65-75: Invariant s 26.8 7.5E+02 0.016 26.8 11.5 55 586-642 72-127 (286)
468 KOG2072 Translation initiation 26.8 1.2E+03 0.025 30.0 14.0 20 218-237 453-472 (988)
469 KOG0244 Kinesin-like protein [ 26.8 7.9E+02 0.017 31.5 12.8 45 655-699 548-593 (913)
470 KOG3467 Histone H4 [Chromatin 26.5 45 0.00098 31.1 2.0 56 126-188 16-72 (103)
471 KOG1760 Molecular chaperone Pr 26.5 4.1E+02 0.0088 26.5 8.4 31 582-612 32-62 (131)
472 COG4238 Murein lipoprotein [Ce 26.0 1.4E+02 0.0031 27.2 4.9 39 624-662 27-65 (78)
473 KOG4348 Adaptor protein CMS/SE 26.0 4E+02 0.0087 31.5 9.6 58 539-622 560-617 (627)
474 PF09789 DUF2353: Uncharacteri 25.9 9.1E+02 0.02 27.3 12.1 78 636-713 9-107 (319)
475 TIGR00020 prfB peptide chain r 25.9 3.8E+02 0.0082 30.6 9.4 28 551-578 26-53 (364)
476 TIGR01541 tape_meas_lam_C phag 25.9 9.8E+02 0.021 26.9 15.3 29 590-618 24-52 (332)
477 PF14817 HAUS5: HAUS augmin-li 25.8 8.5E+02 0.019 29.9 12.7 105 556-664 326-438 (632)
478 PF03474 DMA: DMRTA motif; In 25.8 1.2E+02 0.0026 24.5 3.9 33 215-247 5-37 (39)
479 PF14523 Syntaxin_2: Syntaxin- 25.6 4.8E+02 0.01 23.2 10.4 33 644-683 27-59 (102)
480 PRK10865 protein disaggregatio 25.6 1.4E+03 0.031 28.7 17.2 22 544-565 406-427 (857)
481 KOG2273 Membrane coat complex 25.6 1.1E+03 0.023 27.3 15.8 130 548-709 363-503 (503)
482 cd07674 F-BAR_FCHO1 The F-BAR 25.2 8.5E+02 0.018 25.9 15.4 20 578-597 16-35 (261)
483 KOG2751 Beclin-like protein [S 25.2 5.6E+02 0.012 30.2 10.5 41 659-699 206-247 (447)
484 PRK13922 rod shape-determining 25.1 7.7E+02 0.017 26.1 11.1 41 679-719 63-103 (276)
485 PRK06342 transcription elongat 25.1 1.2E+02 0.0025 30.6 4.8 41 688-728 37-86 (160)
486 KOG3915 Transcription regulato 25.1 2.9E+02 0.0063 32.8 8.3 33 678-710 563-595 (641)
487 KOG1899 LAR transmembrane tyro 25.1 4.8E+02 0.01 32.2 10.2 25 681-705 170-194 (861)
488 PF05837 CENP-H: Centromere pr 24.8 5.8E+02 0.013 23.9 11.4 49 630-678 4-52 (106)
489 PF07106 TBPIP: Tat binding pr 24.8 3.6E+02 0.0078 26.6 8.1 16 550-565 74-89 (169)
490 PF12072 DUF3552: Domain of un 24.8 7.7E+02 0.017 25.3 15.9 106 618-724 27-135 (201)
491 PF06637 PV-1: PV-1 protein (P 24.6 1.2E+03 0.026 27.4 12.9 29 681-709 352-380 (442)
492 PF06810 Phage_GP20: Phage min 24.6 5.2E+02 0.011 25.8 9.2 66 611-676 16-84 (155)
493 TIGR01834 PHA_synth_III_E poly 24.5 1.1E+03 0.023 26.8 14.8 109 548-656 179-316 (320)
494 PF15294 Leu_zip: Leucine zipp 24.5 1E+03 0.022 26.5 15.0 151 548-710 128-278 (278)
495 KOG4739 Uncharacterized protei 24.5 7.2E+02 0.016 27.0 10.6 77 548-627 69-145 (233)
496 PF01517 HDV_ag: Hepatitis del 24.4 1.3E+02 0.0029 30.9 5.0 46 586-645 3-48 (194)
497 KOG4797 Transcriptional regula 24.2 1.2E+02 0.0025 29.5 4.3 30 596-650 66-95 (123)
498 PF07851 TMPIT: TMPIT-like pro 24.2 9.7E+02 0.021 27.2 12.0 81 640-720 1-89 (330)
499 PF06102 DUF947: Domain of unk 24.1 3.4E+02 0.0074 27.5 7.9 61 594-656 60-120 (168)
500 PF01608 I_LWEQ: I/LWEQ domain 24.0 4.8E+02 0.01 26.5 8.8 77 613-707 71-147 (152)
No 1
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.23 E-value=0.18 Score=60.86 Aligned_cols=166 Identities=22% Similarity=0.205 Sum_probs=124.2
Q ss_pred cCcccCcCcccccCCCCchhHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHh
Q 004449 528 AGILSDDTSLEHLVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQ 607 (753)
Q Consensus 528 ~~i~~D~~~l~~~VP~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq 607 (753)
.-+|.+ .++ +|.+|..|.-|.+.+..|..++---++=|+-.+-|...+|.-..-+|.--|.+.+|+
T Consensus 319 ~~~~~~-~sq-----kd~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~-------- 384 (980)
T KOG0980|consen 319 ASDPPN-ASQ-----KDPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQEN-------- 384 (980)
T ss_pred ccCCcc-ccc-----CChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------
Confidence 334555 555 299999999999999999999988888888888888877765555554444433332
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHH
Q 004449 608 ILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQK 687 (753)
Q Consensus 608 ~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK 687 (753)
..|.. +|-+-+--|....+|+++|+..|...|.++......-+.-|--=++-..-.+++++|=....|++.+=+.-+
T Consensus 385 ~~e~e---qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~ 461 (980)
T KOG0980|consen 385 REEQE---QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSI 461 (980)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 11222 677777777888899999998898888888888888888888778888888888888888888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004449 688 ALFQEELVTEKRKVVQLLQELDQ 710 (753)
Q Consensus 688 ~lLQEELa~EK~Kl~~l~qel~q 710 (753)
....+++..--.+|.+++.+..+
T Consensus 462 ~~~~~~~~~L~d~le~~~~~~~~ 484 (980)
T KOG0980|consen 462 DDVEEENTNLNDQLEELQRAAGR 484 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666666666666666655
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.23 E-value=0.1 Score=63.03 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=9.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Q 004449 679 KFQSWEKQKALFQEELVTEKRKVVQ 703 (753)
Q Consensus 679 k~qsWEkQK~lLQEELa~EK~Kl~~ 703 (753)
.+..++.+...+++++...+.++..
T Consensus 344 ~~~~~~~~~~~~~~~l~~~~~~~~~ 368 (1164)
T TIGR02169 344 EIEEERKRRDKLTEEYAELKEELED 368 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333333
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=96.65 E-value=0.47 Score=56.84 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=15.9
Q ss_pred HHHHHHhHHHHHHHHHHHHhhH
Q 004449 548 EIILKLIPRVRELHNQLHEWTE 569 (753)
Q Consensus 548 EmilkLv~rv~eLq~qlqewtd 569 (753)
+.|-++-.++.+|+.++.+++.
T Consensus 475 ~~~~~~~~~~~~le~~l~~~~~ 496 (880)
T PRK02224 475 ERVEELEAELEDLEEEVEEVEE 496 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677888888887775
No 4
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.1 Score=62.31 Aligned_cols=114 Identities=28% Similarity=0.213 Sum_probs=74.9
Q ss_pred HHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 593 RQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKR 672 (753)
Q Consensus 593 R~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~kr 672 (753)
++||||.+|-.+|+|.-| +|+-.|+|..|.+ -.-.-|..|.|.--=+.+|||||- =.|--++
T Consensus 349 qkEreE~ekkererqEqE---rk~qlElekqLer-------QReiE~qrEEerkkeie~rEaar~--------ElEkqRq 410 (1118)
T KOG1029|consen 349 QKEREEEEKKERERQEQE---RKAQLELEKQLER-------QREIERQREEERKKEIERREAARE--------ELEKQRQ 410 (1118)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence 578888877766666444 7888888875554 222222222222222334555542 2233333
Q ss_pred HHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 673 EKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 673 ekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
-.-..-|.|-+-.||..=||+|--++.|.++|++||+-.+...+|++.|+-.
T Consensus 411 lewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~D 462 (1118)
T KOG1029|consen 411 LEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQD 462 (1118)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3444456667778999999999999999999999999999888888888643
No 5
>PRK09039 hypothetical protein; Validated
Probab=96.63 E-value=0.21 Score=54.81 Aligned_cols=96 Identities=19% Similarity=0.193 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhh---HHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhH
Q 004449 556 RVRELHNQLHEWT---EWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVE 632 (753)
Q Consensus 556 rv~eLq~qlqewt---dWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQle 632 (753)
.+.+|+.|+-+=. .--+++--+.-.+|..-.+.|..++.+|++++..-.++......-.-++.+++.+|........
T Consensus 54 eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~s 133 (343)
T PRK09039 54 ALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSA 133 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544422 1223334444555555566666777777777665554433222345678888899999999999
Q ss_pred hhhhHHHHHHHhhHHHHHH
Q 004449 633 RANSAVRRLEVENTALRQE 651 (753)
Q Consensus 633 rAns~vrrLE~EnA~lR~E 651 (753)
.++..|.+|..+++.||++
T Consensus 134 e~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 134 RALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999988
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.35 E-value=0.88 Score=56.97 Aligned_cols=86 Identities=22% Similarity=0.265 Sum_probs=37.1
Q ss_pred HHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004449 624 LCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQ 703 (753)
Q Consensus 624 L~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~ 703 (753)
+.....+++.-.....+|+.+++.++.++.-++..-.+......++-.+......++..-+.++..+.++|..-+.++..
T Consensus 809 ~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~ 888 (1163)
T COG1196 809 LDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEE 888 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444455555555555544444444444444444444444444444444444444444444444433
Q ss_pred HHHHHH
Q 004449 704 LLQELD 709 (753)
Q Consensus 704 l~qel~ 709 (753)
+.+++.
T Consensus 889 l~~~l~ 894 (1163)
T COG1196 889 LEEELR 894 (1163)
T ss_pred HHHHHH
Confidence 333333
No 7
>PRK03918 chromosome segregation protein; Provisional
Probab=96.35 E-value=0.81 Score=54.65 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
.+|..++..+.....+++..+..+..|+.++++|+.+++..+
T Consensus 612 ~~l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~ 653 (880)
T PRK03918 612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELE 653 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555556666666666666666666666665553
No 8
>PRK03918 chromosome segregation protein; Provisional
Probab=96.24 E-value=1.5 Score=52.36 Aligned_cols=71 Identities=23% Similarity=0.333 Sum_probs=37.4
Q ss_pred hhhcHHHHHHHHHhHHHHHHHHHH----HhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHH
Q 004449 582 LSKDKAELKTLRQEKEEVERLKKE----KQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEME 653 (753)
Q Consensus 582 L~kdk~ELksLR~EkEE~erlkKe----Kq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmE 653 (753)
+..-..+++.|+++.++++...+. .+.| +...+++.++++.+.....+++.....+.+++.+..++..+.+
T Consensus 202 ~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l-~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~ 276 (880)
T PRK03918 202 LEEVLREINEISSELPELREELEKLEKEVKEL-EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE 276 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555554332221 1222 2345566666666666666666666666666666555555443
No 9
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.12 E-value=1.7 Score=51.36 Aligned_cols=183 Identities=22% Similarity=0.219 Sum_probs=107.5
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHhhH----HHHHHHH-HHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhH
Q 004449 543 QDKRDEIILKLIPRVRELHNQLHEWTE----WANQKVM-QAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKL 617 (753)
Q Consensus 543 ~D~KDEmilkLv~rv~eLq~qlqewtd----WAnqKvM-QAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrL 617 (753)
.-.++.=|..|.+++++++.++.+..+ --.++.- +-+.|...-+.+...+-...++++.-=..-|..=+.|.+.|
T Consensus 140 ~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el 219 (629)
T KOG0963|consen 140 LKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNEL 219 (629)
T ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 344566778888888888877776654 1111100 01111111111111111111111111111122223344555
Q ss_pred HHHHHH-----------HHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHH
Q 004449 618 SEMENA-----------LCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAE-----SAASCQEVSKREKKTQMKFQ 681 (753)
Q Consensus 618 sEmEnA-----------L~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~E-----S~~sc~Ev~krekk~lkk~q 681 (753)
.+.++. +.=.-..|++||..++-||.|+..||-+..-++=...- ..+.-+-+-.++..-..=.-
T Consensus 220 ~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~ 299 (629)
T KOG0963|consen 220 FDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSN 299 (629)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHH
Confidence 555555 22234568999999999999999999998766433221 11111222225555555556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004449 682 SWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNET 725 (753)
Q Consensus 682 sWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~ 725 (753)
..+.-++-|++|+.+.+.-|..|.+++.......++++.+++.-
T Consensus 300 di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 300 DIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67777889999999999999999999999999999999888764
No 10
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.11 E-value=2 Score=50.35 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=30.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 681 QSWEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (753)
Q Consensus 681 qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~ 714 (753)
-.|..+|.-||......|.+|.+|+.++.++++.
T Consensus 353 ~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~ 386 (546)
T PF07888_consen 353 SQWAQEKQALQHSAEADKDEIEKLSRELQMLEEH 386 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999887764
No 11
>PRK11637 AmiB activator; Provisional
Probab=96.10 E-value=0.88 Score=50.75 Aligned_cols=14 Identities=0% Similarity=0.185 Sum_probs=6.8
Q ss_pred HhHHHHHHHHHHHH
Q 004449 553 LIPRVRELHNQLHE 566 (753)
Q Consensus 553 Lv~rv~eLq~qlqe 566 (753)
+-.++++++.++++
T Consensus 45 ~~~~l~~l~~qi~~ 58 (428)
T PRK11637 45 NRDQLKSIQQDIAA 58 (428)
T ss_pred hHHHHHHHHHHHHH
Confidence 44445555555444
No 12
>PRK11637 AmiB activator; Provisional
Probab=96.02 E-value=1.3 Score=49.31 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q 004449 645 NTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQ 686 (753)
Q Consensus 645 nA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQ 686 (753)
....+.+.+..|-...+..+.-.++....+.....|+.=.++
T Consensus 175 l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 175 LKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444344444334444444444444
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=96.01 E-value=1.1 Score=53.63 Aligned_cols=19 Identities=37% Similarity=0.413 Sum_probs=10.5
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 004449 548 EIILKLIPRVRELHNQLHE 566 (753)
Q Consensus 548 EmilkLv~rv~eLq~qlqe 566 (753)
+++-++...++++..++.+
T Consensus 468 ~~~~~~~~~~~~~~~~~~~ 486 (880)
T PRK02224 468 ETIEEDRERVEELEAELED 486 (880)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 5555566666665544443
No 14
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=95.85 E-value=3.1 Score=44.16 Aligned_cols=143 Identities=22% Similarity=0.254 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhhhcH----HHHHHHHHhHHHHHHHHHHHhh------hhhhhhhhHHHHHHHHHHhhh-hhHhh------
Q 004449 572 NQKVMQAARRLSKDK----AELKTLRQEKEEVERLKKEKQI------LEENTMKKLSEMENALCKASG-QVERA------ 634 (753)
Q Consensus 572 nqKvMQAarRL~kdk----~ELksLR~EkEE~erlkKeKq~------lEe~T~KrLsEmEnAL~kasg-QlerA------ 634 (753)
.+|+-+.+++||+=. +-...++..++=-.+..+-... +-+-.+..+.-.|.-|..-.+ ++|-+
T Consensus 45 ~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn 124 (239)
T PF05276_consen 45 TKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLN 124 (239)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHH
Confidence 356778888888532 2233344433333333332222 223456777777888877663 55543
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 635 NSAVRRLEVENTALRQEMEAAKL--RAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (753)
Q Consensus 635 ns~vrrLE~EnA~lR~EmEAaKL--~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak 712 (753)
+++.+--|+|+...++|.+-.+. ...+....++.+.|+-+++++|..-|=..|+.+++.|...|.+|..|++.+.++|
T Consensus 125 ~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK 204 (239)
T PF05276_consen 125 HATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAK 204 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666665544 3456667788899999999999999999999999999999999999999999998
Q ss_pred HH
Q 004449 713 AL 714 (753)
Q Consensus 713 ~~ 714 (753)
..
T Consensus 205 ~~ 206 (239)
T PF05276_consen 205 SR 206 (239)
T ss_pred HH
Confidence 75
No 15
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.83 E-value=1.5 Score=54.02 Aligned_cols=187 Identities=18% Similarity=0.262 Sum_probs=119.0
Q ss_pred HHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhH--HHHHHHHHHHhhhhhhhh-------------hh
Q 004449 552 KLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEK--EEVERLKKEKQILEENTM-------------KK 616 (753)
Q Consensus 552 kLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~Ek--EE~erlkKeKq~lEe~T~-------------Kr 616 (753)
.+...+.|++.|+++ ++=+..++++....|-++..+-+.=|.-+ |-...+|.-||.+|+++. --
T Consensus 745 ~~~e~v~e~~~~Ike-~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE 823 (1174)
T KOG0933|consen 745 ELLEEVEESEQQIKE-KERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLE 823 (1174)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777776 56678888888877777776655544221 112233444555555532 12
Q ss_pred HHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q 004449 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (753)
Q Consensus 617 LsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~ 696 (753)
..+|+.+++...+|++.-+.....|+.|+..+++...++...-.++.+..-+..++-...=+.+-.-....-+++.|++.
T Consensus 824 ~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~ 903 (1174)
T KOG0933|consen 824 HEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSD 903 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhc
Confidence 56889999999999999999999999999999888888777666666555555555444444443333444445666666
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHhhhhcccccC--------CccccCcch
Q 004449 697 EKRKVVQLLQELDQAKA----LQEQLEEMSNETALISD--------PWRYDYNAC 739 (753)
Q Consensus 697 EK~Kl~~l~qel~qak~----~q~q~E~~~~~~~~~~~--------~~~~~~~~~ 739 (753)
-+-++..|..++...+. ..+.+|....+-..|.| --+|||..|
T Consensus 904 ~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~ 958 (1174)
T KOG0933|consen 904 GELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESY 958 (1174)
T ss_pred ccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccC
Confidence 66666666666665443 45555555555555553 236777665
No 16
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.73 E-value=0.94 Score=46.73 Aligned_cols=127 Identities=25% Similarity=0.317 Sum_probs=60.4
Q ss_pred HhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 004449 581 RLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAA 660 (753)
Q Consensus 581 RL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ 660 (753)
||...+.+|..++.++++.++- -.+.||...-. ....+.....++++....+..|..++..++++++..+-+..
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~--i~~~l~~~~~~----~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~ 94 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRR--IEEILESDSNG----QLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLE 94 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777776655332 11122210000 22233333444444445555555555555555555544443
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 661 ESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (753)
Q Consensus 661 ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~ 713 (753)
+--.+....-..-.......+.-.++...+++++..-++++..+++.+...+.
T Consensus 95 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~ 147 (302)
T PF10186_consen 95 ELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRR 147 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222222222211222234444555666666777667776666666655443
No 17
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.73 E-value=0.82 Score=43.62 Aligned_cols=68 Identities=34% Similarity=0.485 Sum_probs=48.4
Q ss_pred hhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 634 ANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (753)
Q Consensus 634 Ans~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~ 713 (753)
.......+..+++.++.+.++|+-.-.++ -.+|+.||..|+.||..-+.++..|. .|-+-
T Consensus 64 lr~e~~~~~~~~~~l~~~~~~a~~~l~~~-----------------e~sw~~qk~~le~e~~~~~~r~~dL~---~QN~l 123 (132)
T PF07926_consen 64 LREELQELQQEINELKAEAESAKAELEES-----------------EASWEEQKEQLEKELSELEQRIEDLN---EQNKL 123 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 33344445556666666666655444332 34699999999999999999999998 56777
Q ss_pred HHHHHHHh
Q 004449 714 LQEQLEEM 721 (753)
Q Consensus 714 ~q~q~E~~ 721 (753)
+.+|+|..
T Consensus 124 Lh~QlE~l 131 (132)
T PF07926_consen 124 LHDQLESL 131 (132)
T ss_pred HHHHHhhc
Confidence 88888764
No 18
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.73 E-value=1.5 Score=45.53 Aligned_cols=100 Identities=26% Similarity=0.380 Sum_probs=60.4
Q ss_pred hhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHH---HHHHHHHHHH-----------HHHHHHHHHHHhH
Q 004449 612 NTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEA---AKLRAAESAA-----------SCQEVSKREKKTQ 677 (753)
Q Consensus 612 ~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEA---aKL~A~ES~~-----------sc~Ev~krekk~l 677 (753)
.+..||..+|..|.++...++.+.+.+..||.++..+...|.. +--.+++-.. .+.++-.|-...-
T Consensus 117 E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE 196 (237)
T PF00261_consen 117 EVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAE 196 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777766666554432 2222222111 1222223333333
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 678 MKFQSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (753)
Q Consensus 678 kk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qa 711 (753)
.+....+++...|.++|..+|.|...++.+|.++
T Consensus 197 ~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 197 RRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777788888888888888888888765
No 19
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.63 E-value=3.4 Score=42.97 Aligned_cols=136 Identities=23% Similarity=0.264 Sum_probs=81.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004449 586 KAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAAS 665 (753)
Q Consensus 586 k~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~s 665 (753)
..-|..+.+..++.+|.-|....-....-.||..+|..|..|...++.|....-..+-....+..+.+.+.-++.....-
T Consensus 63 ~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~k 142 (237)
T PF00261_consen 63 TEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESK 142 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 44566667777777776655555445555666677777766666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004449 666 CQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEM 721 (753)
Q Consensus 666 c~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~ 721 (753)
|.++-..-+..-.+++++|-.-.+..+-...-..+|..|.+.|..+....+.+|.+
T Consensus 143 i~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~ 198 (237)
T PF00261_consen 143 IKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERR 198 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555555556666665555555544555555555555555555554444443
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.58 E-value=3.5 Score=51.83 Aligned_cols=107 Identities=20% Similarity=0.322 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHhHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSK-------REKKTQMKFQSWEKQK 687 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~k-------rekk~lkk~qsWEkQK 687 (753)
.++..++..+.....++++....+.+++.++..+..++.+-+..-.+-.....++.. .....-..+..-+.++
T Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~ 886 (1163)
T COG1196 807 RRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEK 886 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888888888888888888887777777666665544433333332 2333334444555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004449 688 ALFQEELVTEKRKVVQLLQELDQAKALQEQLEEM 721 (753)
Q Consensus 688 ~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~ 721 (753)
..|+.+|..-.+++.++.++.+++.....+++++
T Consensus 887 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 920 (1163)
T COG1196 887 EELEEELRELESELAELKEEIEKLRERLEELEAK 920 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666665555544443
No 21
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.26 E-value=3.2 Score=52.23 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 683 WEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 683 WEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
||.+...+|+|+..+......+ +|+...++.++++.++.|
T Consensus 672 ~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lse 711 (1317)
T KOG0612|consen 672 LERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSE 711 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcc
Confidence 4445555555555554444444 444444555555555544
No 22
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.23 E-value=2.3 Score=52.88 Aligned_cols=153 Identities=18% Similarity=0.252 Sum_probs=75.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHH-HHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHH
Q 004449 562 NQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVE-RLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRR 640 (753)
Q Consensus 562 ~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~e-rlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrr 640 (753)
..+++-++|...|+=-+..+|..=.+.+..++-|-+.-. +++.-++.| +.-+.+..+.+-.++.+..++++....+.+
T Consensus 298 ~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~-~~~~re~~~~~~~~~~~~n~i~~~k~~~d~ 376 (1074)
T KOG0250|consen 298 DTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDL-DDLRREVNDLKEEIREIENSIRKLKKEVDR 376 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666655555555554433211 111111111 112333455555666666666666666666
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 641 LEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQ-MKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (753)
Q Consensus 641 LE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~l-kk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E 719 (753)
||-.++.++++- -.+..+=++=...+-+.| +.....|.|-+.|.+|+-..++++...++++.+++.-..++.
T Consensus 377 l~k~I~~~~~~~-------~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~ 449 (1074)
T KOG0250|consen 377 LEKQIADLEKQT-------NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLR 449 (1074)
T ss_pred HHHHHHHHHHHH-------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 666666666554 112222111111111111 223334446666666666666666666666655544444444
Q ss_pred Hhh
Q 004449 720 EMS 722 (753)
Q Consensus 720 ~~~ 722 (753)
.++
T Consensus 450 k~i 452 (1074)
T KOG0250|consen 450 KKI 452 (1074)
T ss_pred HHH
Confidence 443
No 23
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.13 E-value=3.5 Score=54.41 Aligned_cols=185 Identities=22% Similarity=0.257 Sum_probs=107.2
Q ss_pred ccccCCCCchhHHHHHHhHHHHHHHHHHHHhhHHHHH------HHHHHHHHhhhcHH-HHHHHHHhHHHHHHHHHHHhhh
Q 004449 537 LEHLVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQ------KVMQAARRLSKDKA-ELKTLRQEKEEVERLKKEKQIL 609 (753)
Q Consensus 537 l~~~VP~D~KDEmilkLv~rv~eLq~qlqewtdWAnq------KvMQAarRL~kdk~-ELksLR~EkEE~erlkKeKq~l 609 (753)
+.+.++--+++|.+.+.=+.++.|+.+++.=..=+++ ++.+...-|..++. |-..++.--|.-++++++|+.+
T Consensus 827 vkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~l 906 (1930)
T KOG0161|consen 827 VKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQEL 906 (1930)
T ss_pred HHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788899999999999999998888764444333 33333332322221 1111222222334555566665
Q ss_pred hhh---hhh-------hHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 004449 610 EEN---TMK-------KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAA---ESAASCQEVSKREKKT 676 (753)
Q Consensus 610 Ee~---T~K-------rLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~---ES~~sc~Ev~krekk~ 676 (753)
|.. +.. +..++|...+++...+.--...++.+|.....+..|..++.-+-. +-...|.|..-+.-+.
T Consensus 907 e~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~ke 986 (1930)
T KOG0161|consen 907 EKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKE 986 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 223 333344555555555555556666666666666666665533222 2223344444333322
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 677 QMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 677 lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
-...|..-..|+++|..++.|+.+|-+...+.++..+.+|....+
T Consensus 987 ---kk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~ 1031 (1930)
T KOG0161|consen 987 ---KKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLER 1031 (1930)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223566777888888888888888888888888877777766544
No 24
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.06 E-value=6 Score=44.91 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=9.0
Q ss_pred HHHHHHhhhhhHhhhhHHHHHHH
Q 004449 621 ENALCKASGQVERANSAVRRLEV 643 (753)
Q Consensus 621 EnAL~kasgQlerAns~vrrLE~ 643 (753)
+.+|.++.-++..+...+.+++.
T Consensus 254 ~~~L~~l~~~~~~~~~~l~~~~~ 276 (562)
T PHA02562 254 SAALNKLNTAAAKIKSKIEQFQK 276 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344344444444333333333
No 25
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.96 E-value=5.6 Score=47.92 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=66.3
Q ss_pred hhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH-HHHH
Q 004449 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQE-MEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQ-KALF 690 (753)
Q Consensus 613 T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~E-mEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQ-K~lL 690 (753)
.+.|.-+||+.+++...+|-.....++.||.|+.++|.. .| --...|..-+=+-+..-+.-.|++..+=|+- |--|
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e--~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldL 620 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKE--SEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDL 620 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 456778888888888888888888888888888888875 44 1123344444444444455555555555432 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 004449 691 QEELVTEKRKVVQLLQELDQAKALQEQLEEMSNETALI 728 (753)
Q Consensus 691 QEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~ 728 (753)
=--|.+-|+.|.-++..+-+=..-..++-+|+.|-+-+
T Consensus 621 fsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av 658 (697)
T PF09726_consen 621 FSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAV 658 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444445555554444444444444455666665544
No 26
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.85 E-value=1.9 Score=54.69 Aligned_cols=21 Identities=24% Similarity=0.204 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHhhhhhHhhhh
Q 004449 616 KLSEMENALCKASGQVERANS 636 (753)
Q Consensus 616 rLsEmEnAL~kasgQlerAns 636 (753)
.|.+++..|.+....++.+++
T Consensus 766 ~le~~~~~l~~~~~~~~~~es 786 (1311)
T TIGR00606 766 DIEEQETLLGTIMPEEESAKV 786 (1311)
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 356666666666666655533
No 27
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.81 E-value=1.1 Score=48.66 Aligned_cols=11 Identities=36% Similarity=0.858 Sum_probs=8.1
Q ss_pred HHhhHHHHHHH
Q 004449 565 HEWTEWANQKV 575 (753)
Q Consensus 565 qewtdWAnqKv 575 (753)
+.|-+|..+-+
T Consensus 137 ~~WYeWR~~ll 147 (325)
T PF08317_consen 137 KMWYEWRMQLL 147 (325)
T ss_pred HHHHHHHHHHH
Confidence 57999986644
No 28
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.62 E-value=4.7 Score=43.55 Aligned_cols=24 Identities=4% Similarity=0.080 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 701 VVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 701 l~~l~qel~qak~~q~q~E~~~~~ 724 (753)
+.++++++.+++...++++..+..
T Consensus 248 l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444444444444433
No 29
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.33 E-value=9.7 Score=44.19 Aligned_cols=91 Identities=25% Similarity=0.249 Sum_probs=42.0
Q ss_pred HhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 626 KASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLL 705 (753)
Q Consensus 626 kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~ 705 (753)
........+.+.|..|++|...+|.|+++++-...+.-....+ ....++-.-.+-.-...|...-+..+..+.
T Consensus 327 ~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~-------l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k 399 (522)
T PF05701_consen 327 RLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSE-------LPKALQQLSSEAEEAKKEAEEAKEEVEKAK 399 (522)
T ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555666666666666665554333322111111 112233333333334445555555555555
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 004449 706 QELDQAKALQEQLEEMSN 723 (753)
Q Consensus 706 qel~qak~~q~q~E~~~~ 723 (753)
+++++++...+.+|.++.
T Consensus 400 ~E~e~~ka~i~t~E~rL~ 417 (522)
T PF05701_consen 400 EEAEQTKAAIKTAEERLE 417 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566655555555555443
No 30
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.33 E-value=4.7 Score=51.31 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=20.3
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 676 TQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (753)
Q Consensus 676 ~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qa 711 (753)
.+.+...|+.+..-|.+||......|..+.++++-+
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~ 914 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPL 914 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445556677666666666666655555544444333
No 31
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.27 E-value=4.9 Score=49.94 Aligned_cols=160 Identities=17% Similarity=0.279 Sum_probs=80.4
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhhHHH--------------HHHHHHHHHHhhhcHHHHHHHHHhHHHHHHH-HHHHhhhh
Q 004449 546 RDEIILKLIPRVRELHNQLHEWTEWA--------------NQKVMQAARRLSKDKAELKTLRQEKEEVERL-KKEKQILE 610 (753)
Q Consensus 546 KDEmilkLv~rv~eLq~qlqewtdWA--------------nqKvMQAarRL~kdk~ELksLR~EkEE~erl-kKeKq~lE 610 (753)
+++.+.+--..+..|++-+++|.--. -+|+-+.++++-+-..|...|-.|.|+.++- +.-|+.|+
T Consensus 760 ~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~ 839 (1174)
T KOG0933|consen 760 KERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLE 839 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666777777665433 3334444444444444444555555544332 11222222
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHH
Q 004449 611 ENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALF 690 (753)
Q Consensus 611 e~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lL 690 (753)
.-.+.++.++..+.+.-+-|+.+...|-++..+...+.+-|-.---......++|.-........--+.+-.|.+-.++
T Consensus 840 -~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~ 918 (1174)
T KOG0933|consen 840 -QLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKL 918 (1174)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHh
Confidence 2334555555555566666666666666666665555554444433344445555444444333333444455555566
Q ss_pred HHHHHHHHHHHHHHHH
Q 004449 691 QEELVTEKRKVVQLLQ 706 (753)
Q Consensus 691 QEELa~EK~Kl~~l~q 706 (753)
+.|-+..+-++..|.+
T Consensus 919 ~~e~~~~~k~v~~l~~ 934 (1174)
T KOG0933|consen 919 ESEKANARKEVEKLLK 934 (1174)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 6666666655555543
No 32
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.23 E-value=6.9 Score=50.83 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004449 685 KQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSN 723 (753)
Q Consensus 685 kQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~ 723 (753)
.-..-+++.+.....++..+.+++..++...++.+...+
T Consensus 442 ~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~ 480 (1486)
T PRK04863 442 DWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQ 480 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666666666666666555555443
No 33
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.18 E-value=2.5 Score=41.38 Aligned_cols=118 Identities=19% Similarity=0.279 Sum_probs=69.4
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 589 LKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQE 668 (753)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~E 668 (753)
|.+||.|++.+... =+.-..++-++|......-.+|..-+.-+..||.+...+...+..+|-.+.++...-..
T Consensus 2 m~~lk~E~d~a~~r-------~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~ 74 (143)
T PF12718_consen 2 MQALKLEADNAQDR-------AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN 74 (143)
T ss_pred hHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 56788888876543 22223334444444444444555555555566666666666666666555555433211
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 669 VSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 669 v~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
..+..+-..+|.|||..=-.+|....+.|.++...-+++|-+...
T Consensus 75 -----------~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~ 119 (143)
T PF12718_consen 75 -----------AEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKA 119 (143)
T ss_pred -----------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 224555566777777777777777777777777776666665543
No 34
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.18 E-value=4.7 Score=53.27 Aligned_cols=148 Identities=26% Similarity=0.307 Sum_probs=78.9
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHH----
Q 004449 563 QLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAV---- 638 (753)
Q Consensus 563 qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~v---- 638 (753)
+|..+.|=||...-.+-+.|.+..+-++.|-.+.+++.+..++-...=-.+-+|+..++.++..-...++.+.-+.
T Consensus 1615 elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE 1694 (1930)
T KOG0161|consen 1615 ELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAE 1694 (1930)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3445566677777777777777777777777777777777665554333344555544444444444333333333
Q ss_pred ------------------------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q 004449 639 ------------------------RRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEEL 694 (753)
Q Consensus 639 ------------------------rrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEEL 694 (753)
++||.+++.|..|+| |....|.-+..|-+|++ -|-+.+.+||
T Consensus 1695 ~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~ele-------e~~~~~~~~~Er~kka~-------~~a~~~~~el 1760 (1930)
T KOG0161|consen 1695 LELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELE-------EEQSELRAAEERAKKAQ-------ADAAKLAEEL 1760 (1930)
T ss_pred HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHH-------HHHHHhHHHH
Confidence 344444444444332 22333333333433333 3445666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 695 VTEKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 695 a~EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
..|++...++..........-+.++.++.|
T Consensus 1761 ~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e 1790 (1930)
T KOG0161|consen 1761 RKEQETSQKLERLKKSLERQVKDLQLRLDE 1790 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655555555554455544443
No 35
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.10 E-value=12 Score=46.92 Aligned_cols=113 Identities=22% Similarity=0.298 Sum_probs=68.9
Q ss_pred hhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHH-HHH
Q 004449 612 NTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQK-ALF 690 (753)
Q Consensus 612 ~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK-~lL 690 (753)
..+.+|+|.|--+....+.++.-..-+..+-.-.-.+|.|+.+.|-.--++..+.+++.++-...-|.+-.-++|- -.+
T Consensus 313 ~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~ 392 (1074)
T KOG0250|consen 313 EARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNEL 392 (1074)
T ss_pred HHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456677777766666666665555444444444455666666665555555555555555444445555555555 556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 691 QEELVTEKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 691 QEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
+.++..-..|+.+|.+|++....+..++..+.++
T Consensus 393 ~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~ 426 (1074)
T KOG0250|consen 393 GSELEERENKLEQLKKEVEKLEEQINSLREELNE 426 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777778888777777766666555543
No 36
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.04 E-value=5.8 Score=46.25 Aligned_cols=121 Identities=15% Similarity=0.212 Sum_probs=100.3
Q ss_pred hhhhHHHHHHHHHHhhhhhHhhhhH----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 004449 613 TMKKLSEMENALCKASGQVERANSA----------VRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQS 682 (753)
Q Consensus 613 T~KrLsEmEnAL~kasgQlerAns~----------vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qs 682 (753)
..+.|.+++........++++-+-. ++.++.+...|..+++...-...+....+-++.++-++..+++..
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee 394 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE 394 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3456777777778888888888888 999999999999999988778888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCcc
Q 004449 683 WEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNETALISDPWR 733 (753)
Q Consensus 683 WEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~~~~~~ 733 (753)
-+++...+++.|..-+.......+.|.+.+..-..+...+....|-.-|=.
T Consensus 395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~ 445 (569)
T PRK04778 395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPED 445 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHH
Confidence 999999999999998888888888888888777777776666655444433
No 37
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.77 E-value=3.9 Score=43.14 Aligned_cols=110 Identities=19% Similarity=0.268 Sum_probs=59.1
Q ss_pred hhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHhHHH
Q 004449 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQM-------KFQSWEK 685 (753)
Q Consensus 613 T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lk-------k~qsWEk 685 (753)
-+.||..||-.+++|...|.++..+++.|+.+.-....|.+--.-.+.+.....+.+...-.+..+ ++.--+.
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~ 89 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA 89 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999998776655444332222222333333333222111111 3333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004449 686 QKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMS 722 (753)
Q Consensus 686 QK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~ 722 (753)
....|.++...--.-..+|+++|..|+..+...-.++
T Consensus 90 ~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 90 EIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444445555556666555555444444
No 38
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.39 E-value=4.8 Score=52.18 Aligned_cols=140 Identities=17% Similarity=0.170 Sum_probs=104.5
Q ss_pred HHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 577 QAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 577 QAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
+|...|++.-.--..|+++.+.+++- ++..++.+.+.+..+.+++..+..+.+..+.++-+..+.+.+|..-=
T Consensus 975 ~~~~~l~~~~~~~~~Le~~Le~iE~~-------~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g 1047 (1486)
T PRK04863 975 DAAEMLAKNSDLNEKLRQRLEQAEQE-------RTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLG 1047 (1486)
T ss_pred HHHhHhhcchhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455555544445666666666555 77788999999999999999999999999999999999999987655
Q ss_pred HHHHHHHHHHHH-----HHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004449 657 LRAAESAASCQE-----VSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSN 723 (753)
Q Consensus 657 L~A~ES~~sc~E-----v~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~ 723 (753)
+.+-+.+.-... +-.+-..+--|--..|+|....+.||..-+.+|..+..++....+...++-++|-
T Consensus 1048 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~ 1119 (1486)
T PRK04863 1048 VPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWC 1119 (1486)
T ss_pred CCCCccHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444333 3333344555667889999999999999999999999999888888777777663
No 39
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.34 E-value=17 Score=48.11 Aligned_cols=118 Identities=24% Similarity=0.277 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhhhhhhhh---hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 596 KEEVERLKKEKQILEENTM---KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKR 672 (753)
Q Consensus 596 kEE~erlkKeKq~lEe~T~---KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~kr 672 (753)
.+.++.+|.+..+|++.+- .=|..-++-+...+.+|=.||.-+.+|++|..-||+|.+.=|..-.--... .+-+-+
T Consensus 695 ~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e-~~~l~~ 773 (1822)
T KOG4674|consen 695 EKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQE-LEKLSA 773 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3456667777777775432 234445666778888999999999999999999999988876543332222 222333
Q ss_pred HHHhHH-HHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 004449 673 EKKTQM-KFQSWEKQKALFQEELVTEK----RKVVQLLQELDQAKAL 714 (753)
Q Consensus 673 ekk~lk-k~qsWEkQK~lLQEELa~EK----~Kl~~l~qel~qak~~ 714 (753)
++..|. .+-.++.++--+++..++.| ++|.+|..+|++++.-
T Consensus 774 e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~k 820 (1822)
T KOG4674|consen 774 EQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKK 820 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 45555555555555555443 3344555555555443
No 40
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.14 E-value=13 Score=42.39 Aligned_cols=9 Identities=22% Similarity=0.593 Sum_probs=4.7
Q ss_pred hhHHHHHHh
Q 004449 546 RDEIILKLI 554 (753)
Q Consensus 546 KDEmilkLv 554 (753)
+-+++-+|+
T Consensus 152 r~~il~~l~ 160 (562)
T PHA02562 152 RRKLVEDLL 160 (562)
T ss_pred HHHHHHHHh
Confidence 455555554
No 41
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.13 E-value=20 Score=44.39 Aligned_cols=152 Identities=23% Similarity=0.288 Sum_probs=99.1
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHh--hh--h---hhhhhhHHH
Q 004449 547 DEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQ--IL--E---ENTMKKLSE 619 (753)
Q Consensus 547 DEmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq--~l--E---e~T~KrLsE 619 (753)
.++|.-+-.|+.+|+-++++=.- ..|+.|--..+|-.+++.|..-|.+-|.++.+-+|+. .+ | +.-.+++++
T Consensus 357 r~~~~q~~~ql~~le~~~~e~q~-~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~ 435 (980)
T KOG0980|consen 357 RRRIEQYENQLLALEGELQEQQR-EAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTE 435 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888877544 3445555566888888888888888887775533221 11 1 111233443
Q ss_pred HHH-------HHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 004449 620 MEN-------ALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQE 692 (753)
Q Consensus 620 mEn-------AL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQE 692 (753)
++- -..-...|++-+.-+.-.++.+|.+|--..|..+..+.+-.+ |-....+.+.+.+.|+++|+.
T Consensus 436 l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~-------K~e~~~~~le~l~~El~~l~~ 508 (980)
T KOG0980|consen 436 LRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAET-------KTESQAKALESLRQELALLLI 508 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHH
Confidence 331 122345677777777778888888888888887776655333 333345667888888999998
Q ss_pred HHHHHHHHHHHHHH
Q 004449 693 ELVTEKRKVVQLLQ 706 (753)
Q Consensus 693 ELa~EK~Kl~~l~q 706 (753)
|++..+.++..+.|
T Consensus 509 e~~~lq~~~~~~~q 522 (980)
T KOG0980|consen 509 ELEELQRTLSNLAQ 522 (980)
T ss_pred HHHHHHHHhhhHHH
Confidence 88888887655543
No 42
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.12 E-value=11 Score=47.64 Aligned_cols=18 Identities=44% Similarity=0.617 Sum_probs=9.4
Q ss_pred hHHHHHHhHHHHHHHHHH
Q 004449 547 DEIILKLIPRVRELHNQL 564 (753)
Q Consensus 547 DEmilkLv~rv~eLq~ql 564 (753)
+|.+.+|=+++.+|++++
T Consensus 805 ee~~~~lr~~~~~l~~~l 822 (1293)
T KOG0996|consen 805 EERVRKLRERIPELENRL 822 (1293)
T ss_pred HHHHHHHHHhhHHHHhHH
Confidence 344555555555555543
No 43
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.05 E-value=27 Score=42.95 Aligned_cols=101 Identities=25% Similarity=0.255 Sum_probs=47.6
Q ss_pred hhhhHHHHHHHHHHhhhhhHhhhhHHHH---HHHhhHHHHHH-HHHHHHH-HHHH--HHHHHHHHHHHHHhHHHHHhHHH
Q 004449 613 TMKKLSEMENALCKASGQVERANSAVRR---LEVENTALRQE-MEAAKLR-AAES--AASCQEVSKREKKTQMKFQSWEK 685 (753)
Q Consensus 613 T~KrLsEmEnAL~kasgQlerAns~vrr---LE~EnA~lR~E-mEAaKL~-A~ES--~~sc~Ev~krekk~lkk~qsWEk 685 (753)
-++.+.+.+..+.+.....++.....++ |+.++..+..+ .+.+++- .-.. .....++.++..+.+.....+++
T Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~ 389 (908)
T COG0419 310 LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEE 389 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4456666666555555544444444443 35555555222 2222221 1111 11122333333335666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 686 QKALFQEELVTEKRKVVQLLQELDQAKA 713 (753)
Q Consensus 686 QK~lLQEELa~EK~Kl~~l~qel~qak~ 713 (753)
+...+.+++.....++..+++.+...++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 417 (908)
T COG0419 390 AIQELKEELAELSAALEEIQEELEELEK 417 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555555544444444433
No 44
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.04 E-value=12 Score=40.53 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 690 FQEELVTEKRKVVQLLQELDQAKALQEQLEE 720 (753)
Q Consensus 690 LQEELa~EK~Kl~~l~qel~qak~~q~q~E~ 720 (753)
+++++..-+..+.+++.++.+++...+....
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i 274 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARDRLQRLII 274 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcEE
Confidence 3344555555555555555555554444333
No 45
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=92.90 E-value=13 Score=43.18 Aligned_cols=118 Identities=26% Similarity=0.307 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhhhcHHHHHH----HHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHH---------
Q 004449 572 NQKVMQAARRLSKDKAELKT----LRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAV--------- 638 (753)
Q Consensus 572 nqKvMQAarRL~kdk~ELks----LR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~v--------- 638 (753)
+|=....+++|-....||-. .-=||-++++.=+.-|..=.+|-|.|-|-.++-.--.-||.+-.+--
T Consensus 357 QqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 357 QQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44455666677666666542 22356666666556666667788888887777666666666655443
Q ss_pred ----------HHHHHhhHHHHHHHHHHHHHH----HHHHH-HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q 004449 639 ----------RRLEVENTALRQEMEAAKLRA----AESAA-SCQEVSKREKKTQMKFQSWEKQKALFQEELV 695 (753)
Q Consensus 639 ----------rrLE~EnA~lR~EmEAaKL~A----~ES~~-sc~Ev~krekk~lkk~qsWEkQK~lLQEELa 695 (753)
+=||++.+..++|+|.-.|+- .|-|+ |-++++||||++.. .+---||+|+-
T Consensus 437 eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~E------qefLslqeEfQ 502 (527)
T PF15066_consen 437 EIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETRE------QEFLSLQEEFQ 502 (527)
T ss_pred HHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 457888899999999888763 34444 88999999998763 44455666664
No 46
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.56 E-value=16 Score=38.69 Aligned_cols=127 Identities=23% Similarity=0.342 Sum_probs=82.6
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 589 LKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQE 668 (753)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~E 668 (753)
|+.+|.+.|. ...+-++.+|..=-.++.++.....+.+..+.++..-+.++......++.|++..+-.-..-.....+
T Consensus 171 L~eiR~~ye~--~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~ 248 (312)
T PF00038_consen 171 LREIRAQYEE--IAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHH--HHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH
Confidence 5667777763 45666777888888889999888888888888888888888888888887777655433322233222
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 669 VSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEE 720 (753)
Q Consensus 669 v~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~ 720 (753)
+ +...-+.++.|...-..|+.||..-+..+.+..++.+..-..+=.++.
T Consensus 249 l---e~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~ 297 (312)
T PF00038_consen 249 L---EQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDA 297 (312)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 2 223334455566666666677776666666666666555554444443
No 47
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.56 E-value=27 Score=43.91 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCC
Q 004449 663 AASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNETALISDP 731 (753)
Q Consensus 663 ~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~~~~ 731 (753)
...|-++..|-++...++.-.++.-..++-++..-|.+-.+.|.++.++++-..+.++.+-++-..-+|
T Consensus 296 ~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~e~~ 364 (1072)
T KOG0979|consen 296 QRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETEDPENP 364 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcccc
Confidence 344455555555555555555555555555555555555555555555555555555555544443333
No 48
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.52 E-value=9 Score=46.77 Aligned_cols=98 Identities=26% Similarity=0.340 Sum_probs=75.0
Q ss_pred HHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q 004449 618 SEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAA--SCQEVSKREKKTQMKFQSWEKQKALFQEELV 695 (753)
Q Consensus 618 sEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~--sc~Ev~krekk~lkk~qsWEkQK~lLQEELa 695 (753)
.++|-.|.++..|++...+.++.+|...++|+.|++.+|=+.+...+ -|+.-+ ....+.+...++.|+.
T Consensus 606 ~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~---------~e~le~~~~~~e~E~~ 676 (769)
T PF05911_consen 606 EELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKES---------YESLETRLKDLEAEAE 676 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhhhhHHHHHHH
Confidence 45667778888899999999999999999999999988765544433 333322 3455677778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 696 TEKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 696 ~EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
.-..||..|..||++-+....+.+++.++
T Consensus 677 ~l~~Ki~~Le~Ele~er~~~~e~~~kc~~ 705 (769)
T PF05911_consen 677 ELQSKISSLEEELEKERALSEELEAKCRE 705 (769)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 99999999999988888776666666543
No 49
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.44 E-value=12 Score=47.56 Aligned_cols=13 Identities=15% Similarity=0.163 Sum_probs=8.7
Q ss_pred CCCcCcccCcCcc
Q 004449 525 CGYAGILSDDTSL 537 (753)
Q Consensus 525 ~~~~~i~~D~~~l 537 (753)
.+|+||.+|=..+
T Consensus 581 dslyGl~LdL~~I 593 (1201)
T PF12128_consen 581 DSLYGLSLDLSAI 593 (1201)
T ss_pred cccceeEeehhhc
Confidence 4788888884343
No 50
>PF13166 AAA_13: AAA domain
Probab=92.40 E-value=28 Score=41.04 Aligned_cols=106 Identities=16% Similarity=0.245 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHhHHHHHHHHHHHH
Q 004449 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKT-QMKFQSWEKQKALFQEEL 694 (753)
Q Consensus 616 rLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~-lkk~qsWEkQK~lLQEEL 694 (753)
.+..+...+......++..|..+..++.+...++......-+ .....-.+...++.+. -+.++..++++..+++++
T Consensus 364 ~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 440 (712)
T PF13166_consen 364 DIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLI---AKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEI 440 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666666666666654433322 1111222122333333 347788888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 695 VTEKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 695 a~EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
..-+.+|.+|++++.......+.+-..++-
T Consensus 441 ~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~ 470 (712)
T PF13166_consen 441 KKIEKEIKELEAQLKNTEPAADRINEELKR 470 (712)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999888777777777666554
No 51
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=92.35 E-value=11 Score=48.66 Aligned_cols=142 Identities=19% Similarity=0.250 Sum_probs=66.7
Q ss_pred HhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhH
Q 004449 553 LIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVE 632 (753)
Q Consensus 553 Lv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQle 632 (753)
|-.++..|+.=++.+..|+....-+.+..+-....++..++.+ +.+.+..+..+..+++
T Consensus 242 l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~ 300 (1353)
T TIGR02680 242 LEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRD---------------------LGRARDELETAREEER 300 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
Confidence 3333444444444444455444444444444444444444333 3333444444555555
Q ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 633 RANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (753)
Q Consensus 633 rAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak 712 (753)
+++.....||.+...++.|.++.+-+.+--. =++ ..+.-..+..+.++.....+++..-++++.++++++..+.
T Consensus 301 ~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~--~~e----L~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~ 374 (1353)
T TIGR02680 301 ELDARTEALEREADALRTRLEALQGSPAYQD--AEE----LERARADAEALQAAAADARQAIREAESRLEEERRRLDEEA 374 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555443222111 011 1111124555566666666666666666666666666555
Q ss_pred HHHHHHHHh
Q 004449 713 ALQEQLEEM 721 (753)
Q Consensus 713 ~~q~q~E~~ 721 (753)
....+.+..
T Consensus 375 ~r~~~~~~~ 383 (1353)
T TIGR02680 375 GRLDDAERE 383 (1353)
T ss_pred HHHHHHHHH
Confidence 544444333
No 52
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.10 E-value=8.4 Score=45.73 Aligned_cols=9 Identities=44% Similarity=0.704 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 004449 556 RVRELHNQL 564 (753)
Q Consensus 556 rv~eLq~ql 564 (753)
.+.+||.+|
T Consensus 329 el~~l~~~l 337 (594)
T PF05667_consen 329 ELEELQEQL 337 (594)
T ss_pred HHHHHHHHH
Confidence 344444443
No 53
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.04 E-value=11 Score=41.31 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004449 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAE 661 (753)
Q Consensus 617 LsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~E 661 (753)
+..|......-..+++.++..+-+|....+.|+.|.+-.+-...|
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 555566666666666666667766666666666666554433333
No 54
>PF13514 AAA_27: AAA domain
Probab=92.04 E-value=24 Score=44.43 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=16.3
Q ss_pred CCCCchhHHHHHHhHHHHHHHHHHHHhhHHHH
Q 004449 541 VPQDKRDEIILKLIPRVRELHNQLHEWTEWAN 572 (753)
Q Consensus 541 VP~D~KDEmilkLv~rv~eLq~qlqewtdWAn 572 (753)
+|.+--.+.+...+..++++...++++.+|..
T Consensus 719 L~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ 750 (1111)
T PF13514_consen 719 LPADASPEEALEALELLEELREALAEIRELRR 750 (1111)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555444
No 55
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.02 E-value=19 Score=38.41 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q 004449 644 ENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSW 683 (753)
Q Consensus 644 EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsW 683 (753)
|...|..||..||-+...--....++-.+.++.-+....-
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l 129 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDL 129 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666555555555555544444433333
No 56
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.96 E-value=1.9 Score=46.80 Aligned_cols=120 Identities=22% Similarity=0.348 Sum_probs=82.3
Q ss_pred cCCCCchhHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHH----------HHhhhcHHHHHHHHHhHHHHHHHHHHHhhh
Q 004449 540 LVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAA----------RRLSKDKAELKTLRQEKEEVERLKKEKQIL 609 (753)
Q Consensus 540 ~VP~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvMQAa----------rRL~kdk~ELksLR~EkEE~erlkKeKq~l 609 (753)
|+-.+=||=+=-+-+..|+||+.||.--+-=-+||-+|.- ++...++.|.-+|..|. ++|-..-..|
T Consensus 3 Wa~eEWKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREn---q~l~e~c~~l 79 (307)
T PF10481_consen 3 WAVEEWKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKREN---QSLMESCENL 79 (307)
T ss_pred chHhHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhh---hhHHHHHHHH
Confidence 6666667777778889999999999888888888877631 23334444444443331 1111111111
Q ss_pred hhhhhhhHHH----HHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004449 610 EENTMKKLSE----MENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESA 663 (753)
Q Consensus 610 Ee~T~KrLsE----mEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~ 663 (753)
|.++.||+. -|.-+.--.|||.++.-.+.+||.|+..|+.|+|-+...+....
T Consensus 80 -ek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~ 136 (307)
T PF10481_consen 80 -EKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGD 136 (307)
T ss_pred -HHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 235666654 46677778899999999999999999999999998887776443
No 57
>PF13514 AAA_27: AAA domain
Probab=91.83 E-value=16 Score=46.01 Aligned_cols=113 Identities=32% Similarity=0.458 Sum_probs=76.7
Q ss_pred CcccccCCCCchhHHHHHHhHHHHHHHHHHHHhh----HHH--HHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhh
Q 004449 535 TSLEHLVPQDKRDEIILKLIPRVRELHNQLHEWT----EWA--NQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQI 608 (753)
Q Consensus 535 ~~l~~~VP~D~KDEmilkLv~rv~eLq~qlqewt----dWA--nqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~ 608 (753)
+.-.-|-|+ .+.-.|-.++.++++++.++++.. +|. .+.+-++-.++..-..+++.|+.++...++++.-...
T Consensus 138 ea~~Lfkpr-g~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~ 216 (1111)
T PF13514_consen 138 EADELFKPR-GRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPL 216 (1111)
T ss_pred HHHHhhCCC-CCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344468888 666678899999999999998764 454 3456677778888888888898888888887542222
Q ss_pred h-------------------hhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHH
Q 004449 609 L-------------------EENTMKKLSEMENALCKASGQVERANSAVRRLEVENTAL 648 (753)
Q Consensus 609 l-------------------Ee~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~l 648 (753)
+ -+....++.+++..+..+..++++....+..|+.+...|
T Consensus 217 ~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l 275 (1111)
T PF13514_consen 217 LAELQQLEAELAELGEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDAL 275 (1111)
T ss_pred HHHHHHHHHHHHhcCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 133456666666666666666666666666655554443
No 58
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.82 E-value=20 Score=38.25 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=32.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004449 677 QMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNET 725 (753)
Q Consensus 677 lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~ 725 (753)
-..+..-......|+++|...+.++..+.+++..+++.-+.-.+.++|+
T Consensus 109 e~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~ 157 (239)
T COG1579 109 EDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREE 157 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666677777777777777777777777776655555555554
No 59
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.81 E-value=8.6 Score=47.89 Aligned_cols=68 Identities=18% Similarity=0.178 Sum_probs=31.7
Q ss_pred HHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q 004449 620 MENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEEL 694 (753)
Q Consensus 620 mEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEEL 694 (753)
+.+-+..++..+..|+.-++..=-+.-+++++|++.|-. --.+.+++.+.+++++.=-|.-.-+|+||
T Consensus 288 t~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~-------le~lk~~~~~rq~~i~~~~k~i~~~q~el 355 (1072)
T KOG0979|consen 288 TRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNK-------LESLKKAAEKRQKRIEKAKKMILDAQAEL 355 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333344444444445555555555555666666654421 12233444455555554444444444443
No 60
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.76 E-value=19 Score=42.68 Aligned_cols=50 Identities=20% Similarity=0.360 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAA 664 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~ 664 (753)
-|--+||++|......+++-..-..+|-.+|.+|++..|-.++++++--.
T Consensus 287 ~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~ 336 (581)
T KOG0995|consen 287 SKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVER 336 (581)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 35568999999999999999999999999999999999999999887433
No 61
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.64 E-value=18 Score=37.36 Aligned_cols=90 Identities=13% Similarity=0.244 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEEL 694 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEEL 694 (753)
.|+..+...+.+...+++.....+.++..+++..+..+. .......+..+...+....+..++.+...++.++
T Consensus 70 ~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 142 (302)
T PF10186_consen 70 ERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS-------ASQDLVESRQEQLEELQNELEERKQRLSQLQSQL 142 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555554444 1122223333334444556666777767788888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004449 695 VTEKRKVVQLLQELDQA 711 (753)
Q Consensus 695 a~EK~Kl~~l~qel~qa 711 (753)
...+..+.+....+=-+
T Consensus 143 ~~~r~~l~~~l~~ifpI 159 (302)
T PF10186_consen 143 ARRRRQLIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 87777766654444333
No 62
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=91.59 E-value=4.6 Score=47.30 Aligned_cols=128 Identities=19% Similarity=0.222 Sum_probs=77.1
Q ss_pred hhhhhhHHHHHHHHHHhhh-hhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHH
Q 004449 611 ENTMKKLSEMENALCKASG-QVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKAL 689 (753)
Q Consensus 611 e~T~KrLsEmEnAL~kasg-QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~l 689 (753)
+...+||-||.|-+--.-. .+++-...-++.| ++...+..-|++++.|.+....-||..++.+...++++ |..|+.
T Consensus 178 ~~~~~r~~e~Q~qv~qsl~~el~~i~~~~q~~e-qi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~--eqekiR 254 (591)
T KOG2412|consen 178 KEVKRRLLEEQNQVLQSLDTELQAIQREKQRKE-QIRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQ--EQEKIR 254 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh--HHHHHH
Confidence 3455677888886654333 4444444444444 44455556677788999999999999999998888877 455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----ccccCCccccCcchhhhcc
Q 004449 690 FQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNET-----ALISDPWRYDYNACWFQQS 744 (753)
Q Consensus 690 LQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~-----~~~~~~~~~~~~~~~~~~~ 744 (753)
+-||-..|++|-++.+.+ +..+.-+.+|.+.-+. ..-.|+- -|-+.-|.+|-
T Consensus 255 ~~eekqeee~ke~e~~~~--k~~q~~~~~eek~a~qk~~~~~~~~~~~-~ds~m~w~~~d 311 (591)
T KOG2412|consen 255 AEEEKQEEERKEAEEQAE--KEVQDPKAHEEKLAEQKAVIEKVTTSSA-SDSQMFWNSQD 311 (591)
T ss_pred HHHHHHHHHHHHHHHHHH--HHhcCchhccccccccccccccccCCch-hHHHhhhhHHH
Confidence 666666666666555443 3333344444444332 1122222 45566666643
No 63
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=91.54 E-value=12 Score=39.78 Aligned_cols=109 Identities=16% Similarity=0.206 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhhhhHhhhhHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHH
Q 004449 617 LSEMENALCKASGQVERANSAVRRLE---VENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEE 693 (753)
Q Consensus 617 LsEmEnAL~kasgQlerAns~vrrLE---~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEE 693 (753)
|..++..+..+..+++.|.....|.+ .+.+--+.+++.++......-.....+...-. ..+..++.+...++.+
T Consensus 99 ~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~ 175 (327)
T TIGR02971 99 VAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALASRS---EQIDGARAALASLAEE 175 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhc
Confidence 44555555555555555555444433 34555566666666554443333332221111 2223333333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCC
Q 004449 694 LVTEKRKVVQLLQELDQAKALQEQLEEMSNETALISDP 731 (753)
Q Consensus 694 La~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~~~~ 731 (753)
+. +.++...+.++++++...++.+..+..+ .|.-|
T Consensus 176 ~~--~~~~~~~~~~~~~~~~~l~~a~~~l~~~-~i~AP 210 (327)
T TIGR02971 176 VR--ETDVDLAQAEVKSALEAVQQAEALLELT-YVKAP 210 (327)
T ss_pred cc--HHHHHHHHHHHHHHHHHHHHHHHHHhcC-EEECC
Confidence 22 2344555556666666666666666555 34444
No 64
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.51 E-value=12 Score=37.18 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q 004449 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELV 695 (753)
Q Consensus 616 rLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa 695 (753)
.+..++.......+++......+..++.....+++|+. ++.+..+......+.-+.+...++++..
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~--------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (191)
T PF04156_consen 110 ELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIR--------------ELQKELQDSREEVQELRSQLERLQENLQ 175 (191)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444432 2222223333334444444444455555
Q ss_pred HHHHHHHHHHHHH
Q 004449 696 TEKRKVVQLLQEL 708 (753)
Q Consensus 696 ~EK~Kl~~l~qel 708 (753)
...+++..++..+
T Consensus 176 ~l~~~~~~~~~l~ 188 (191)
T PF04156_consen 176 QLEEKIQELQELL 188 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 5555544444443
No 65
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.43 E-value=2.9 Score=45.61 Aligned_cols=119 Identities=21% Similarity=0.273 Sum_probs=61.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004449 587 AELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASC 666 (753)
Q Consensus 587 ~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc 666 (753)
.++..+++|++.-.++=+.-+ -++.+-..+.+.+..|.+...+-+++...+++||.|.+++.+|++..+....
T Consensus 16 ~~~~~~~~E~~~Y~~fL~~l~-~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~------ 88 (314)
T PF04111_consen 16 KQLEQAEKERDTYQEFLKKLE-EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE------ 88 (314)
T ss_dssp ---------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 444555555555555433332 1122334456666777777777778888888999999999998887544332
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 667 QEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (753)
Q Consensus 667 ~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~ 713 (753)
++-+.|.+..+..-....|..-+++|+..-+..+...+++|++.+.
T Consensus 89 -~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 89 -ELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2334455555555666666666777777766666666666665543
No 66
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.42 E-value=44 Score=41.24 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 666 CQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEE 720 (753)
Q Consensus 666 c~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~ 720 (753)
+......-...+.++..|+.+...+++++..-+.++..+.+...+....+++...
T Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 364 (908)
T COG0419 310 LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLK 364 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455556666666666666666665555555555554444444443333
No 67
>PRK09039 hypothetical protein; Validated
Probab=91.40 E-value=4.4 Score=44.70 Aligned_cols=100 Identities=10% Similarity=0.123 Sum_probs=49.7
Q ss_pred hhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHH-----HHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHhHHH
Q 004449 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQ-----EMEAAKLRA--AESAASCQEVSKREKKTQMKFQSWEK 685 (753)
Q Consensus 613 T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~-----EmEAaKL~A--~ES~~sc~Ev~krekk~lkk~qsWEk 685 (753)
.+-+...++..|.....|++-|.+.--+||.-.+.... |..++.|.+ .+.-+-..|.-..-...-..+.+++.
T Consensus 72 e~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~ 151 (343)
T PRK09039 72 ERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRR 151 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45566667777777777777666666666665443322 122222211 00001111222222233334566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 686 QKALFQEELVTEKRKVVQLLQELDQAK 712 (753)
Q Consensus 686 QK~lLQEELa~EK~Kl~~l~qel~qak 712 (753)
|.+-||++|.+-+.+....+..++..+
T Consensus 152 Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 152 QLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666555555554444443
No 68
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=91.27 E-value=10 Score=41.58 Aligned_cols=28 Identities=39% Similarity=0.485 Sum_probs=13.9
Q ss_pred HHHHHHHHHhHHHHHHHH----HHHhhhhhhh
Q 004449 586 KAELKTLRQEKEEVERLK----KEKQILEENT 613 (753)
Q Consensus 586 k~ELksLR~EkEE~erlk----KeKq~lEe~T 613 (753)
+.|-..||+|-||.---| |=||.+++.+
T Consensus 284 qieterlrqeeeelnikk~e~~kikqe~ddkd 315 (445)
T KOG2891|consen 284 QIETERLRQEEEELNIKKAEACKIKQEFDDKD 315 (445)
T ss_pred hhhHHHHhhhHhhhhhhHHHhhchhhhcCccc
Confidence 345556666666543222 2355555544
No 69
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.16 E-value=23 Score=37.55 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 689 LFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (753)
Q Consensus 689 lLQEELa~EK~Kl~~l~qel~qak~~q~q~E 719 (753)
.+++|+..-+.+|..|+.++...+.....+|
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le 243 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLE 243 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhh
Confidence 3344444444444444444444433333333
No 70
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=91.06 E-value=39 Score=40.05 Aligned_cols=56 Identities=32% Similarity=0.441 Sum_probs=29.4
Q ss_pred HHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHH
Q 004449 592 LRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQE 651 (753)
Q Consensus 592 LR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~E 651 (753)
|+..+++.+.|+.+.+.+... ...+.........|.+.+...++.||.++..+...
T Consensus 180 L~~~~ee~e~L~~~~kel~~~----~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk 235 (546)
T PF07888_consen 180 LEQEEEEMEQLKQQQKELTES----SEELKEERESLKEQLAEARQRIRELEEDIKTLTQK 235 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666665555444432 12223333344455666666677777666655443
No 71
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.93 E-value=37 Score=39.56 Aligned_cols=73 Identities=21% Similarity=0.316 Sum_probs=28.4
Q ss_pred HHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q 004449 622 NALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEEL 694 (753)
Q Consensus 622 nAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEEL 694 (753)
..|..+..+|+.++..+.+...|...|+..++.-+..=...-.....+..|+...--..++.+.+...++.||
T Consensus 281 ~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 281 SSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 3344444444444444433333333333333332222222222333333344444444444444444444444
No 72
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.79 E-value=14 Score=44.16 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 645 NTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (753)
Q Consensus 645 nA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~ 714 (753)
...|=+.|+-=|.-++...+.=.++...-.+...+|...-.+|+-|..-|-+|.+-..+|...|.+.++.
T Consensus 141 ~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~ 210 (617)
T PF15070_consen 141 RQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEK 210 (617)
T ss_pred HHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556777777788888888888888888888999999999888888888887777777777766653
No 73
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.77 E-value=47 Score=40.47 Aligned_cols=91 Identities=29% Similarity=0.263 Sum_probs=75.9
Q ss_pred HHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004449 624 LCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQ 703 (753)
Q Consensus 624 L~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~ 703 (753)
+++---|+..-.+.++.|+.|.-.+..=||--|-.++|...+--.+.-+-.++-+++..-+.|-+.+-.||..++.|..+
T Consensus 526 i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~r 605 (698)
T KOG0978|consen 526 IGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKR 605 (698)
T ss_pred HHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555566667777777777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 004449 704 LLQELDQAKAL 714 (753)
Q Consensus 704 l~qel~qak~~ 714 (753)
|++|++..+.-
T Consensus 606 leEE~e~L~~k 616 (698)
T KOG0978|consen 606 LEEELERLKRK 616 (698)
T ss_pred HHHHHHHHHHH
Confidence 99999887643
No 74
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.69 E-value=54 Score=41.91 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=24.6
Q ss_pred HHHHHHhHHHHHHHHHHHHhhH---HHHHHHHHHHHHhhhcHHHHHHHHHhHH
Q 004449 548 EIILKLIPRVRELHNQLHEWTE---WANQKVMQAARRLSKDKAELKTLRQEKE 597 (753)
Q Consensus 548 EmilkLv~rv~eLq~qlqewtd---WAnqKvMQAarRL~kdk~ELksLR~EkE 597 (753)
..|-.+..+..+++.+++.... =+...+.++...+......+..|+.+++
T Consensus 614 ~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 666 (1201)
T PF12128_consen 614 DQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNERE 666 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455555666666655543321 2334455555555555555555444443
No 75
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.66 E-value=18 Score=43.11 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=34.6
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 004449 611 ENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR 658 (753)
Q Consensus 611 e~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~ 658 (753)
+.|+.-|.+-|+.|.|-.+.||.+...+..|..+=-..|..+..-..+
T Consensus 383 ~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~ 430 (594)
T PF05667_consen 383 KKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRR 430 (594)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345555666788888888888888888888888777777666554433
No 76
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.53 E-value=4.1 Score=49.59 Aligned_cols=116 Identities=23% Similarity=0.331 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhhhhh----------hhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHH----------------------
Q 004449 596 KEEVERLKKEKQILEE----------NTMKKLSEMENALCKASGQVERANSAVRRLEV---------------------- 643 (753)
Q Consensus 596 kEE~erlkKeKq~lEe----------~T~KrLsEmEnAL~kasgQlerAns~vrrLE~---------------------- 643 (753)
.++.+.++-+|..||. .++-+|.|+|.-|.....||+.++..-..+|.
T Consensus 595 ~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E 674 (769)
T PF05911_consen 595 EEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAE 674 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3445555555555554 47889999999999999999988877777666
Q ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 004449 644 ------ENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSW---EKQKALFQE-ELVTEKRKVVQLLQELDQA 711 (753)
Q Consensus 644 ------EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsW---EkQK~lLQE-ELa~EK~Kl~~l~qel~qa 711 (753)
+...|..|++.-|..-.|..+-|+++-..-.+.-+....| +..+-.-|| ||++--.||++=|+.+.-.
T Consensus 675 ~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sL 752 (769)
T PF05911_consen 675 AEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASL 752 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666777777777644433333333333 455555666 9999999999888877643
No 77
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=90.27 E-value=8.8 Score=39.00 Aligned_cols=99 Identities=22% Similarity=0.260 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q 004449 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (753)
Q Consensus 617 LsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~ 696 (753)
|-|||.+|.++...|-++-+...+|+.+..+++.+.+.=.-+|-.....=.|-+ -+..|.+.+.-+.+..-|++.+..
T Consensus 32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edL--Ar~al~~k~~~e~~~~~l~~~~~~ 109 (221)
T PF04012_consen 32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDL--AREALQRKADLEEQAERLEQQLDQ 109 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888888888776654444433222211111 023344444445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004449 697 EKRKVVQLLQELDQAKALQEQ 717 (753)
Q Consensus 697 EK~Kl~~l~qel~qak~~q~q 717 (753)
....+.+|...+.+++....+
T Consensus 110 ~~~~~~~l~~~l~~l~~kl~e 130 (221)
T PF04012_consen 110 AEAQVEKLKEQLEELEAKLEE 130 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 554444444444444444333
No 78
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=90.07 E-value=12 Score=45.57 Aligned_cols=114 Identities=20% Similarity=0.264 Sum_probs=91.8
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004449 601 RLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKF 680 (753)
Q Consensus 601 rlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~ 680 (753)
-|=+|=-..|..=+-||.|+|+.|+.+..+|+++.+-.-||...+.+++++.|...+.-..--.-..|..-||..-|-.+
T Consensus 20 ~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy 99 (717)
T PF09730_consen 20 SLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDY 99 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 35556666778888999999999999999999999999999999999999888887777777778888899999998888
Q ss_pred HhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 004449 681 QSWEKQKALFQEELV----------TEKRKVVQLLQELDQAKAL 714 (753)
Q Consensus 681 qsWEkQK~lLQEELa----------~EK~Kl~~l~qel~qak~~ 714 (753)
--.|-+.+-||.-+. .-|+-|..|.+|.+..+.+
T Consensus 100 selEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~q 143 (717)
T PF09730_consen 100 SELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQ 143 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888876444 4455666666665544433
No 79
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.02 E-value=37 Score=43.51 Aligned_cols=49 Identities=31% Similarity=0.352 Sum_probs=27.2
Q ss_pred HHhhhhhhhhhhHHHHHHHHH---HhhhhhHhhhhHHHHHHHhhHHHHHHHH
Q 004449 605 EKQILEENTMKKLSEMENALC---KASGQVERANSAVRRLEVENTALRQEME 653 (753)
Q Consensus 605 eKq~lEe~T~KrLsEmEnAL~---kasgQlerAns~vrrLE~EnA~lR~EmE 653 (753)
+|+.|+.-.+-.-.|||++-+ ++..-++++++.-+.||.-+..+++|-|
T Consensus 509 ~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~ 560 (1317)
T KOG0612|consen 509 KKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESE 560 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHH
Confidence 344444444444455555532 2223356666777777766666666666
No 80
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=89.97 E-value=35 Score=37.66 Aligned_cols=110 Identities=20% Similarity=0.251 Sum_probs=87.4
Q ss_pred hhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 004449 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQE 692 (753)
Q Consensus 613 T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQE 692 (753)
-.+++++++--|..+..|++.. .-+++|-.|.-.++.+...=.=...+-+...|++...=.++..+.--..+.-..+++
T Consensus 136 lvq~I~~L~k~le~~~k~~e~~-~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he 214 (294)
T COG1340 136 LVQKIKELRKELEDAKKALEEN-EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHE 214 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888888888888887764 457788888888888888877788888888899988888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004449 693 ELVTEKRKVVQLLQELDQAKALQEQLEEMSN 723 (753)
Q Consensus 693 ELa~EK~Kl~~l~qel~qak~~q~q~E~~~~ 723 (753)
++..-..++.+++.++-.+.+-..+++..+.
T Consensus 215 ~~ve~~~~~~e~~ee~~~~~~elre~~k~ik 245 (294)
T COG1340 215 EFVELSKKIDELHEEFRNLQNELRELEKKIK 245 (294)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777777777776666666665443
No 81
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.96 E-value=29 Score=44.23 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=49.3
Q ss_pred hhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHhHHHHHH
Q 004449 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQ----MKFQSWEKQKA 688 (753)
Q Consensus 613 T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~l----kk~qsWEkQK~ 688 (753)
++++++|+|++..+++.+...-+.-+-.|+...--++.+.+--+...-.-.....+-.++..+.| +++.--..+..
T Consensus 424 ~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~ 503 (1293)
T KOG0996|consen 424 ARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELD 503 (1293)
T ss_pred HHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888877777777777666666555444444444444333333333333322222222 22222333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 689 LFQEELVTEKRKVVQLLQELDQAKA 713 (753)
Q Consensus 689 lLQEELa~EK~Kl~~l~qel~qak~ 713 (753)
..+.||..-+.+-..++..++.++.
T Consensus 504 vaesel~~L~~~~~~~~~~~e~lk~ 528 (1293)
T KOG0996|consen 504 VAESELDILLSRHETGLKKVEELKG 528 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444544444444444444443333
No 82
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=89.45 E-value=19 Score=37.19 Aligned_cols=103 Identities=19% Similarity=0.231 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHhHHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAA-----SCQEVSKREKKTQMKFQSWEKQKAL 689 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~-----sc~Ev~krekk~lkk~qsWEkQK~l 689 (753)
--+-||+.+|.++...|-++-+..+++|.+..++..+.+-=.-+|-.... =-.+++.+.+.....+...+.|-..
T Consensus 31 q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~ 110 (219)
T TIGR02977 31 LIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAA 110 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678999999999999999999999998888877765543333332221 1234555777777788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 690 FQEELVTEKRKVVQLLQELDQAKALQEQ 717 (753)
Q Consensus 690 LQEELa~EK~Kl~~l~qel~qak~~q~q 717 (753)
++.-+..-+.+|.+|++.++.++..+..
T Consensus 111 ~~~~v~~l~~~l~~L~~ki~~~k~k~~~ 138 (219)
T TIGR02977 111 VEETLAKLQEDIAKLQAKLAEARARQKA 138 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888777663
No 83
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=89.41 E-value=70 Score=40.38 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=15.3
Q ss_pred HHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004449 674 KKTQMKFQSWEKQKALFQEELVTEKRKVV 702 (753)
Q Consensus 674 kk~lkk~qsWEkQK~lLQEELa~EK~Kl~ 702 (753)
...+..++.|..+...|++++.....++.
T Consensus 369 ~~~~~~l~~~~~~l~~l~~~~~~~~~~l~ 397 (1047)
T PRK10246 369 RAQFSQQTSDREQLRQWQQQLTHAEQKLN 397 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555
No 84
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.39 E-value=38 Score=41.13 Aligned_cols=152 Identities=22% Similarity=0.314 Sum_probs=81.0
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhhHHH---HHHHHHHHHHhhhcHHHHHHHHHhHHHHHH--------HHHHHhhhhhhhh
Q 004449 546 RDEIILKLIPRVRELHNQLHEWTEWA---NQKVMQAARRLSKDKAELKTLRQEKEEVER--------LKKEKQILEENTM 614 (753)
Q Consensus 546 KDEmilkLv~rv~eLq~qlqewtdWA---nqKvMQAarRL~kdk~ELksLR~EkEE~er--------lkKeKq~lEe~T~ 614 (753)
..+.+.+|-.-|+.|+.+|+--.-=- .+++.+-+.==..-+.||..||+|-|+.|. .++|||.|.- ..
T Consensus 416 ~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~-LE 494 (697)
T PF09726_consen 416 EPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQ-LE 494 (697)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 45667788888888888876433211 122222221111336778888888887765 5556655532 22
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR---AAESAASCQEVSKREKKTQMKFQSWEKQKALFQ 691 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~---A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQ 691 (753)
|||-|-..+-..+..|| ..|...-++|=|+|... |.-+-.-|.|..| .|.+-||.+.-.|+
T Consensus 495 krL~eE~~~R~~lEkQL----------~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r------~r~~~lE~E~~~lr 558 (697)
T PF09726_consen 495 KRLAEERRQRASLEKQL----------QEERKARKEEEEKAARALAQAQATRQECAESCR------QRRRQLESELKKLR 558 (697)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHhHHHHhhhhccccchhccchhHHHHH------HHHHHHHHHHHHHH
Confidence 33333222222222221 11221111122222211 1111125666443 34577889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004449 692 EELVTEKRKVVQLLQELDQAKAL 714 (753)
Q Consensus 692 EELa~EK~Kl~~l~qel~qak~~ 714 (753)
-||..-.+-+..+.+++++...+
T Consensus 559 ~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 559 RELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999899998888777776
No 85
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.18 E-value=15 Score=43.82 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLE 642 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE 642 (753)
.+|.+++..|..|..+...|.+..+.++
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~ 264 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVK 264 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888887777766666555544
No 86
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.07 E-value=10 Score=43.42 Aligned_cols=103 Identities=19% Similarity=0.247 Sum_probs=72.1
Q ss_pred HHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHH----HHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 004449 551 LKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELK----TLRQEKEEVERLKKEKQILEENTMKKLSEMENALCK 626 (753)
Q Consensus 551 lkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELk----sLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~k 626 (753)
-.+..|+..|.+.++ +-+++|. .+.-+++||. ..+.+++..+++..|+|-++..+-+.|+.-+.-+..
T Consensus 157 ~~~~~~i~~l~~~~~---~l~~~~~-----~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~e 228 (420)
T COG4942 157 PARAERIDALKATLK---QLAAVRA-----EIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEE 228 (420)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554443 3334443 3445667777 566777888888889999999888888888888887
Q ss_pred hhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004449 627 ASGQVERANSAVRRLEVENTALRQEMEAAKLRAAE 661 (753)
Q Consensus 627 asgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~E 661 (753)
--.+=.+....+.++|.++|.-|..+||++-.+.+
T Consensus 229 L~~~~~~L~~~Ias~e~~aA~~re~~aa~~aa~~~ 263 (420)
T COG4942 229 LRANESRLKNEIASAEAAAAKAREAAAAAEAAAAR 263 (420)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778888888888777777766654443
No 87
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.03 E-value=37 Score=41.35 Aligned_cols=165 Identities=27% Similarity=0.251 Sum_probs=90.4
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHH-HHhhhhhhhh---hhHH
Q 004449 543 QDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKK-EKQILEENTM---KKLS 618 (753)
Q Consensus 543 ~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkK-eKq~lEe~T~---KrLs 618 (753)
||.--+---.||+||.||-.-|+ .+-.|||||=-.=.-|..-|-.-.+++|+.-. =-|.+-+.|+ ..+.
T Consensus 575 Qdear~~~~~lvqqv~dLR~~L~-------~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE 647 (961)
T KOG4673|consen 575 QDEARERESMLVQQVEDLRQTLS-------KKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIE 647 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Confidence 44444444568888888877664 34457778765555555555555555554433 3466677776 4455
Q ss_pred HHHHHHHHhhhhhHh-hhhHHHHHHHhhHHHHHHHH----------HHH--HHHHHHHHHHHH-----HHHHHHHhHHHH
Q 004449 619 EMENALCKASGQVER-ANSAVRRLEVENTALRQEME----------AAK--LRAAESAASCQE-----VSKREKKTQMKF 680 (753)
Q Consensus 619 EmEnAL~kasgQler-Ans~vrrLE~EnA~lR~EmE----------AaK--L~A~ES~~sc~E-----v~krekk~lkk~ 680 (753)
-|..+|.+++.-=+| -.+...||---.-+||.-.+ +-+ |...++--+|++ +.+-..+.-.|.
T Consensus 648 ~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~ 727 (961)
T KOG4673|consen 648 ALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRA 727 (961)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666678777766555 22333333322222222111 111 111222233322 122233333445
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 681 QSWEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (753)
Q Consensus 681 qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~ 714 (753)
---++|-..+||||.+.+..+.+|.++....|..
T Consensus 728 ~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~ 761 (961)
T KOG4673|consen 728 AENRQEYLAAQEEADTLEGRANQLEVEIRELKRK 761 (961)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888999988888888887776655543
No 88
>PRK11281 hypothetical protein; Provisional
Probab=89.01 E-value=9.4 Score=48.37 Aligned_cols=85 Identities=21% Similarity=0.291 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHH
Q 004449 571 ANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQ 650 (753)
Q Consensus 571 AnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~ 650 (753)
-++++-+|.+++..-..+|..|+++-+....-.-.+..+.+ =..+|.+.|..|..+..++..+|+.+-.+...-..-+.
T Consensus 85 L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~q-LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~ 163 (1113)
T PRK11281 85 LKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQ-LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQA 163 (1113)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 45666777777666666666666532221100001111111 22444555555555555555555555555544444444
Q ss_pred HHHHHH
Q 004449 651 EMEAAK 656 (753)
Q Consensus 651 EmEAaK 656 (753)
.|.++.
T Consensus 164 ~lsea~ 169 (1113)
T PRK11281 164 ALYANS 169 (1113)
T ss_pred HHHHHH
Confidence 443333
No 89
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=88.99 E-value=11 Score=38.42 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=19.6
Q ss_pred HHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 622 NALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKRE 673 (753)
Q Consensus 622 nAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~kre 673 (753)
.+|+....+|.++..+|-+.-...-.+.++++.+.-.+.+-...-..++++.
T Consensus 30 q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g 81 (221)
T PF04012_consen 30 QAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG 81 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333333333333333333333333333333333333333333333333333
No 90
>PRK01156 chromosome segregation protein; Provisional
Probab=88.92 E-value=32 Score=41.93 Aligned_cols=23 Identities=4% Similarity=0.131 Sum_probs=9.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 004449 678 MKFQSWEKQKALFQEELVTEKRK 700 (753)
Q Consensus 678 kk~qsWEkQK~lLQEELa~EK~K 700 (753)
.++..-+++...|..++..-+..
T Consensus 688 ~~l~~l~~~~~~l~~~i~~l~~~ 710 (895)
T PRK01156 688 KALDDAKANRARLESTIEILRTR 710 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444443333
No 91
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=88.91 E-value=54 Score=38.48 Aligned_cols=168 Identities=18% Similarity=0.238 Sum_probs=104.6
Q ss_pred HHhHHHHHHHHHHHHhhHHHHH-HHHHHHHHhhhcHHHHHHHHHhHHHH---------------HHHHHHHhhhhh----
Q 004449 552 KLIPRVRELHNQLHEWTEWANQ-KVMQAARRLSKDKAELKTLRQEKEEV---------------ERLKKEKQILEE---- 611 (753)
Q Consensus 552 kLv~rv~eLq~qlqewtdWAnq-KvMQAarRL~kdk~ELksLR~EkEE~---------------erlkKeKq~lEe---- 611 (753)
.|=.++.+++.++....+|... --.+|..-|.+-..++..|+.-.+++ +.|+.+-+-|.+
T Consensus 169 ~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~ 248 (569)
T PRK04778 169 ELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYH 248 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC
Confidence 5677899999999999999653 33444444444444444444444444 334444333332
Q ss_pred ----hhhhhHHHHHHHHHH-----hhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 004449 612 ----NTMKKLSEMENALCK-----ASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQS 682 (753)
Q Consensus 612 ----~T~KrLsEmEnAL~k-----asgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qs 682 (753)
+--+++..|++.|.. ...+|+.|...+..++.++..|=.-||.... +-..|-+.-.+..+.+..
T Consensus 249 ~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~-------A~~~vek~~~~l~~~l~~ 321 (569)
T PRK04778 249 LDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVK-------ARKYVEKNSDTLPDFLEH 321 (569)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHH
Confidence 235788888888887 5677888888888888888877666554332 222334444445555566
Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhhcc
Q 004449 683 WEKQKALFQEELVTEKRK----------VVQLLQELDQAKALQEQLEEMSNETA 726 (753)
Q Consensus 683 WEkQK~lLQEELa~EK~K----------l~~l~qel~qak~~q~q~E~~~~~~~ 726 (753)
-+.|-..|..||..-++. +.+++++|..++...++++..+++..
T Consensus 322 ~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~ 375 (569)
T PRK04778 322 AKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQE 375 (569)
T ss_pred HHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 666666777777666665 66677777776666666666655543
No 92
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.83 E-value=33 Score=37.44 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q 004449 645 NTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRK 700 (753)
Q Consensus 645 nA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~K 700 (753)
...+|.|+...+..-.+--+...++-.+-.....++..-+.||..+++||+.-+..
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555444444444444444444444444455666666677777776654433
No 93
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=88.66 E-value=27 Score=44.61 Aligned_cols=147 Identities=13% Similarity=0.098 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHH
Q 004449 569 EWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTAL 648 (753)
Q Consensus 569 dWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~l 648 (753)
+=|-+++|++..+|-.-++|...+++-.-|+.+ ++-+--.--|.|+.+|+.-..++|..+++|+.=+.++
T Consensus 1411 ~~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~----------~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v 1480 (1758)
T KOG0994|consen 1411 GGALLMAGDADTQLRSKLAEAEQTLSMVREAKL----------SASEAQQSAQRALEQANASRSQMEESNRELRNLIQQV 1480 (1758)
T ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777776666665544444333321 1222222334555555555555555555555444444
Q ss_pred HHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q 004449 649 RQEMEAAKL--------------------------------RAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (753)
Q Consensus 649 R~EmEAaKL--------------------------------~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~ 696 (753)
|-=+++-+- .+++|..+--.|+-|-+-.+-|....+..-..-.++-..
T Consensus 1481 ~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~ 1560 (1758)
T KOG0994|consen 1481 RDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAED 1560 (1758)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHH
Confidence 422211111 123333444445555555555555544444444555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004449 697 EKRKVVQLLQELDQAKALQEQLEEMSNET 725 (753)
Q Consensus 697 EK~Kl~~l~qel~qak~~q~q~E~~~~~~ 725 (753)
.|.+...+++-|++|.+.|..++..+.++
T Consensus 1561 v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a 1589 (1758)
T KOG0994|consen 1561 VKGQAEDVVEALEEADVAQGEAQDAIQGA 1589 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66677777778888888877777777654
No 94
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.39 E-value=45 Score=38.41 Aligned_cols=59 Identities=27% Similarity=0.357 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhh
Q 004449 573 QKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVEN 645 (753)
Q Consensus 573 qKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~En 645 (753)
+++-+.-.++.+-..+|+.|..|...++. -|.+.++.|.+...+++..+.....||++-
T Consensus 52 ~~i~~~~~~~~kL~~~lk~~e~~i~~~~~--------------ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 52 KKIREQQDQRAKLEKQLKSLETEIASLEA--------------QLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444444555555555555555544433 344444444444444444444444444433
No 95
>PRK12704 phosphodiesterase; Provisional
Probab=88.33 E-value=49 Score=38.79 Aligned_cols=72 Identities=13% Similarity=0.192 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q 004449 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEK 685 (753)
Q Consensus 614 ~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEk 685 (753)
.++|.+.|+.|.+-..+|++-...+.+.|.+....+++++.-+-...+-...+.++.......|.+.-.+-.
T Consensus 81 e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~ 152 (520)
T PRK12704 81 RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTA 152 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 566777777777777777777777776666666666666555555555555666666666666666554433
No 96
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=88.19 E-value=20 Score=39.48 Aligned_cols=46 Identities=17% Similarity=0.331 Sum_probs=32.4
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 670 SKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQ 715 (753)
Q Consensus 670 ~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q 715 (753)
.+|.+|.+.||+.=+.-.-.|||-+..|..+|.+.+.++..++-+.
T Consensus 392 errkqkeeeklk~e~qkikeleek~~eeedal~~all~~qeirl~~ 437 (445)
T KOG2891|consen 392 ERRKQKEEEKLKAEEQKIKELEEKIKEEEDALLLALLNLQEIRLIA 437 (445)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4566777777877554445688888888888887777776665443
No 97
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=88.18 E-value=43 Score=41.23 Aligned_cols=134 Identities=21% Similarity=0.241 Sum_probs=80.0
Q ss_pred HHHHhhhcHHHHH-HHHHhHHHHHHHHHHHhhhhhh---hhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHh-hHHHHHH-
Q 004449 578 AARRLSKDKAELK-TLRQEKEEVERLKKEKQILEEN---TMKKLSEMENALCKASGQVERANSAVRRLEVE-NTALRQE- 651 (753)
Q Consensus 578 AarRL~kdk~ELk-sLR~EkEE~erlkKeKq~lEe~---T~KrLsEmEnAL~kasgQlerAns~vrrLE~E-nA~lR~E- 651 (753)
-.+.|-.+-++.+ -..+-+-|++||-.--+.+|.. +-|++.+++..|.++..++...+..+.-.-.+ +--.++|
T Consensus 549 r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~~~~~~~~~~~~~~k~~~~~~~~~el 628 (775)
T PF10174_consen 549 RIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKAQMHLAKQQETVEATKIEENKRKRAEL 628 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhhhhhhhhhHHHHHhhhHH
Confidence 3344444444443 3445567777777655555543 45889999999999999888777766643222 2222222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHH--------HHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 652 -MEAAKLRAAESAASCQEVSKRE--------KKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (753)
Q Consensus 652 -mEAaKL~A~ES~~sc~Ev~kre--------kk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qa 711 (753)
-+|-+++.+.++.-.+-.+.+. .+.-+.+.-++.+-..++.|+..-+-++...|+.|..-
T Consensus 629 leea~Ree~~~t~e~~l~~s~q~~~~~~~~~~~~e~qleeL~~~l~k~~~Eld~l~~qL~ssq~~L~e~ 697 (775)
T PF10174_consen 629 LEEALREEVSITEERELAQSQQKLAQQEAQSSHLEKQLEELEAALEKLRQELDQLKAQLESSQQSLMER 697 (775)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 2344555555555333333322 22335677777788888888888888887777766543
No 98
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=87.77 E-value=37 Score=37.85 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCc
Q 004449 699 RKVVQLLQELDQAKALQEQLEEMSNETALISDPW 732 (753)
Q Consensus 699 ~Kl~~l~qel~qak~~q~q~E~~~~~~~~~~~~~ 732 (753)
..+.+++.++.+++....+++..+.....|--|.
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~i~AP~ 260 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKLNLNTRIVSQH 260 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEcCC
Confidence 4566777777777777777777775433344443
No 99
>PRK01156 chromosome segregation protein; Provisional
Probab=87.72 E-value=77 Score=38.79 Aligned_cols=11 Identities=9% Similarity=0.229 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 004449 683 WEKQKALFQEE 693 (753)
Q Consensus 683 WEkQK~lLQEE 693 (753)
++++...++++
T Consensus 700 l~~~i~~l~~~ 710 (895)
T PRK01156 700 LESTIEILRTR 710 (895)
T ss_pred HHHHHHHHHhh
Confidence 33444444333
No 100
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=87.54 E-value=17 Score=38.34 Aligned_cols=104 Identities=19% Similarity=0.206 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEEL 694 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEEL 694 (753)
-.+-+|+..|.++...+.++-+..++||.+...++.+++-=.=+|-.....=.|.+- ++.|.+.++.|.+...++.++
T Consensus 31 Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LA--r~al~~~~~le~~~~~~~~~~ 108 (225)
T COG1842 31 QAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLA--REALEEKQSLEDLAKALEAEL 108 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999988888776543333332222222222 234555566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 695 VTEKRKVVQLLQELDQAKALQEQLEE 720 (753)
Q Consensus 695 a~EK~Kl~~l~qel~qak~~q~q~E~ 720 (753)
......+.+|...+.+...-..+++.
T Consensus 109 ~~~~~~~~~l~~~~~~Le~Ki~e~~~ 134 (225)
T COG1842 109 QQAEEQVEKLKKQLAALEQKIAELRA 134 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555555444444444433
No 101
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=87.50 E-value=14 Score=43.12 Aligned_cols=69 Identities=23% Similarity=0.228 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004449 651 EMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMS 722 (753)
Q Consensus 651 EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~ 722 (753)
.+-.++.=.-.-+.+.++-.+.+.|.+.+...++..+.-+++|+....-||..| +++++++|+++|+-+
T Consensus 426 ~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l---~~~Tr~Lq~~iE~~I 494 (507)
T PF05600_consen 426 MIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDAL---VERTRELQKQIEADI 494 (507)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHH
Confidence 444555555566778888889999999999999999999999999999988777 467899999999865
No 102
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.30 E-value=32 Score=43.28 Aligned_cols=124 Identities=29% Similarity=0.357 Sum_probs=72.9
Q ss_pred HHHHHHhHHHH---HHHHHHHhhhhhh--------hhhhHHHHH--------------HHHHHhhhhhHhhhhHHHHHHH
Q 004449 589 LKTLRQEKEEV---ERLKKEKQILEEN--------TMKKLSEME--------------NALCKASGQVERANSAVRRLEV 643 (753)
Q Consensus 589 LksLR~EkEE~---erlkKeKq~lEe~--------T~KrLsEmE--------------nAL~kasgQlerAns~vrrLE~ 643 (753)
|..|-.||||. +.|-|++.+||=. ++..|..+| .|+.++....++-...+.+||.
T Consensus 200 LreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~ 279 (1200)
T KOG0964|consen 200 LRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELEN 279 (1200)
T ss_pred HHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444444444 4555677777632 344444444 3566677778888888999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 644 ENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (753)
Q Consensus 644 EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak 712 (753)
....||.|.|-++.+..+-...-.-+-=+-+--...+-.=+.|+...-..|..-++||.+.++||..++
T Consensus 280 ~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~ 348 (1200)
T KOG0964|consen 280 KLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIE 348 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999888877655443322221122222333334445555555555555666666666665554
No 103
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=87.12 E-value=39 Score=34.73 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=76.0
Q ss_pred hhhhHHHHH--HHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHhHHH
Q 004449 613 TMKKLSEME--NALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR-----AAESAASCQEVSKREKKTQMKFQSWEK 685 (753)
Q Consensus 613 T~KrLsEmE--nAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~-----A~ES~~sc~Ev~krekk~lkk~qsWEk 685 (753)
+...|...| .+|+++=.++-.+.-.+.++..+. ..-|..+|. -.....|+..++.+-.+.+-.++..++
T Consensus 47 ~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~----a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~ 122 (216)
T cd07627 47 TLEALSSLELSKSLSDLLAALAEVQKRIKESLERQ----ALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAES 122 (216)
T ss_pred HHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777 566666666665555555555442 222333332 234566777888888999999999999
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 686 QKALFQEELVTE-------KRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 686 QK~lLQEELa~E-------K~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
+-.+++..+..- ..|+.++..++..++..+.+++..+.+
T Consensus 123 ~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~ 168 (216)
T cd07627 123 ELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEE 168 (216)
T ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888776 378889999998888888877776543
No 104
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=86.84 E-value=38 Score=40.62 Aligned_cols=166 Identities=20% Similarity=0.324 Sum_probs=92.5
Q ss_pred CCCCchhHHHHHH------hHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhc---H--HH-----------HHHHHHhHHH
Q 004449 541 VPQDKRDEIILKL------IPRVRELHNQLHEWTEWANQKVMQAARRLSKD---K--AE-----------LKTLRQEKEE 598 (753)
Q Consensus 541 VP~D~KDEmilkL------v~rv~eLq~qlqewtdWAnqKvMQAarRL~kd---k--~E-----------LksLR~EkEE 598 (753)
++-|+|.+..+.+ =|+=-.|-.-++-....-+ |.-++.+++..- + .. -..|++.+|+
T Consensus 322 LsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~-kl~~vEr~~~~~g~~~d~~rika~VIrG~~l~eal~~~~e~ 400 (652)
T COG2433 322 LSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKP-KLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEE 400 (652)
T ss_pred CCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHH-HHHHHHHhcccccchhhHHHHHHHeecCCcHHHHHHHHHhh
Confidence 3456666633222 1344445566666666666 777777777644 1 11 2345666655
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 004449 599 VERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKK--- 675 (753)
Q Consensus 599 ~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk--- 675 (753)
.+ -+|+.--++.-.-.+.-.++-|.+-..+ |.+|+.||+.|+.+.|.-|---.+--.-|.++.++...
T Consensus 401 ~~--p~e~~~~~~~e~~ei~~~~~~i~~~~~~-------ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~ 471 (652)
T COG2433 401 ER--PREKEGTEEEERREITVYEKRIKKLEET-------VERLEEENSELKRELEELKREIEKLESELERFRREVRDKVR 471 (652)
T ss_pred hc--cccccccccccccchhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 54 1121111222223334444444444444 44455555555555555443333333444444444332
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 676 TQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (753)
Q Consensus 676 ~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~ 716 (753)
--+.++..+..-..|+-+|..++.++.+|..+|+++++.+.
T Consensus 472 ~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 472 KDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22346677888889999999999999999999999987654
No 105
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=86.65 E-value=50 Score=35.51 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=24.8
Q ss_pred CchhHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHH
Q 004449 544 DKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQA 578 (753)
Q Consensus 544 D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvMQA 578 (753)
|...+..-+|..++.+-..++....+.+..+--|.
T Consensus 92 d~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~ 126 (297)
T PF02841_consen 92 DEDQKYQKKLMEQIEKKFEEFCKQNEEASEKKCQA 126 (297)
T ss_dssp -GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888888888888876655444
No 106
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.64 E-value=98 Score=38.88 Aligned_cols=106 Identities=11% Similarity=0.145 Sum_probs=53.1
Q ss_pred CchhHHHHHHh--HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhc-----------HHHHHHHHHhHHHHHHHHHHHhhhh
Q 004449 544 DKRDEIILKLI--PRVRELHNQLHEWTEWANQKVMQAARRLSKD-----------KAELKTLRQEKEEVERLKKEKQILE 610 (753)
Q Consensus 544 D~KDEmilkLv--~rv~eLq~qlqewtdWAnqKvMQAarRL~kd-----------k~ELksLR~EkEE~erlkKeKq~lE 610 (753)
++|-+++.+|+ .+...+...+++...++..++-..-.++.-. .+++..|.+..++.....+..+. .
T Consensus 163 ~eR~~il~~l~g~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~l~~~~~~l~~~~~~~~~~~~~~~~-~ 241 (1042)
T TIGR00618 163 KEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQ-S 241 (1042)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 45556666664 4666777777777777777776666666421 12233333333222222221111 1
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHH
Q 004449 611 ENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQ 650 (753)
Q Consensus 611 e~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~ 650 (753)
.....++.++..++.....+++.+......++.+...+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (1042)
T TIGR00618 242 HAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEE 281 (1042)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123445555555555555555555555555554444443
No 107
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.06 E-value=45 Score=34.44 Aligned_cols=96 Identities=21% Similarity=0.317 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEV--------ENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQ 686 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~--------EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQ 686 (753)
.+..++|+-|+.+..+|-+.+..+++|.. |..+|-.+.+.+.-...+.. ++++..|+|
T Consensus 82 ~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~--------------~ki~~Lek~ 147 (194)
T PF15619_consen 82 EQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKE--------------KKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH
Confidence 45566677777777777777777777664 22233333322222222222 223333333
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 687 K----ALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 687 K----~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
- ..++-+|..|+.|+..++.++..+..-.+.+.-++.|
T Consensus 148 leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 148 LELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2456778888888888888877766665555555543
No 108
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=85.81 E-value=1.5 Score=34.08 Aligned_cols=35 Identities=23% Similarity=0.121 Sum_probs=31.3
Q ss_pred hHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhc
Q 004449 213 ELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAM 247 (753)
Q Consensus 213 GLVafLrs~fP~LS~~DAmwyLLlADaDLl~A~am 247 (753)
.+|..|++.||.++.....++|..++.|+..|+.+
T Consensus 3 ~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~ 37 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDA 37 (42)
T ss_dssp HHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 57889999999999999999999999999999864
No 109
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=85.76 E-value=1.5 Score=34.06 Aligned_cols=36 Identities=17% Similarity=0.056 Sum_probs=33.1
Q ss_pred HhHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhc
Q 004449 212 AELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAM 247 (753)
Q Consensus 212 ~GLVafLrs~fP~LS~~DAmwyLLlADaDLl~A~am 247 (753)
...|..|++.||.++...+.++|..++.|+..||..
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~ 38 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINN 38 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 457889999999999999999999999999999864
No 110
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=85.69 E-value=5 Score=43.32 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=53.9
Q ss_pred CchhHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 004449 544 DKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENA 623 (753)
Q Consensus 544 D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnA 623 (753)
++||++|-. +.++.++ ..+.+=|+.|.-|.++.|.+...++..+ ++++....+ .+| -+.|-+...|.
T Consensus 151 ~ekd~~i~~---~~~~~e~--d~rnq~l~~~i~~l~~~l~~~~~~~~~~-~~~~~~~~~------~~e-~~~r~~~lr~~ 217 (264)
T PF07246_consen 151 EEKDQLIKE---KTQEREN--DRRNQILSHEISNLTNELSNLRNDIDKF-QEREDEKIL------HEE-LEARESGLRNE 217 (264)
T ss_pred HHHHHHHHH---Hhhchhh--hhHHHHHHHHHHHhhhhHHHhhchhhhh-hhhhhHHHH------HHH-HHHhHhhhHHH
Confidence 556666655 5565655 6666777777777777777666665555 223322222 222 35555555566
Q ss_pred HHHhhhhhHhhhhHHHHHHHhhHH
Q 004449 624 LCKASGQVERANSAVRRLEVENTA 647 (753)
Q Consensus 624 L~kasgQlerAns~vrrLE~EnA~ 647 (753)
.+.-..++.+|....+++..++.-
T Consensus 218 ~~~l~~el~~aK~~~~~~~~~~~~ 241 (264)
T PF07246_consen 218 SKWLEHELSDAKEDMIRLRNDISD 241 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 666667777777777766665543
No 111
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=85.40 E-value=25 Score=39.06 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=58.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQE 707 (753)
Q Consensus 637 ~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qe 707 (753)
-+++|-.|..-|.+|+.-||..|-.-|+--.---|-+.--.|=...|=-++.+||-|+..-|.||+-..+-
T Consensus 67 q~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERt 137 (351)
T PF07058_consen 67 QVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERT 137 (351)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777889999999999988886665556666678889999999999999999999999866554
No 112
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=85.11 E-value=26 Score=33.54 Aligned_cols=96 Identities=23% Similarity=0.358 Sum_probs=65.3
Q ss_pred hhhhhhhHHHHHHHHHHhhhhh------HhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q 004449 610 EENTMKKLSEMENALCKASGQV------ERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSW 683 (753)
Q Consensus 610 Ee~T~KrLsEmEnAL~kasgQl------erAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsW 683 (753)
+|.-.|||...=..+.+..... +.......++..+.+.+.-.|.-+++ . .++-++| .+.|
T Consensus 14 ~dr~l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~-------~-~~~n~~e------~e~Y 79 (139)
T PF05615_consen 14 DDRPLKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQL-------I-LEMNKRE------RENY 79 (139)
T ss_pred CchhHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-------H-HHHHHHH------HHHH
Confidence 5555556555555555555433 55555666666655555544443333 2 2344444 5789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 684 EKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (753)
Q Consensus 684 EkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E 719 (753)
+..+..+.++|...|..|.+|..+|+.|+...++-+
T Consensus 80 ~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~ 115 (139)
T PF05615_consen 80 EQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKE 115 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999866655
No 113
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=84.99 E-value=86 Score=36.74 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREK 674 (753)
Q Consensus 616 rLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krek 674 (753)
++.+.+..+.....++........+++.++++++.+.|+....+.|-.+...+..++-+
T Consensus 54 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~ 112 (475)
T PRK10361 54 QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLS 112 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666777777777778888888888877777777766655555444433
No 114
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=84.91 E-value=56 Score=38.20 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhcc
Q 004449 682 SWEKQKALFQEELVTEKRKVVQLLQELDQA-KALQEQLEEMSNETA 726 (753)
Q Consensus 682 sWEkQK~lLQEELa~EK~Kl~~l~qel~qa-k~~q~q~E~~~~~~~ 726 (753)
.-+.+...|++++..-+.++.++-++|.++ ++..++++..+.+..
T Consensus 343 ~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l 388 (563)
T TIGR00634 343 DSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQEL 388 (563)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666777777777777777777666 334455555555443
No 115
>PRK10698 phage shock protein PspA; Provisional
Probab=84.89 E-value=31 Score=36.02 Aligned_cols=106 Identities=18% Similarity=0.188 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHhHHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAAS-----CQEVSKREKKTQMKFQSWEKQKAL 689 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~s-----c~Ev~krekk~lkk~qsWEkQK~l 689 (753)
-=+-|||.+|.++...|-++-+.-+++|.+...+..+.+-=.-+|--.... -.+++.+.+....++...+.|-.-
T Consensus 31 q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~ 110 (222)
T PRK10698 31 LMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTL 110 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888888888888877777766654433333322221 235566667777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 690 FQEELVTEKRKVVQLLQELDQAKALQEQLEE 720 (753)
Q Consensus 690 LQEELa~EK~Kl~~l~qel~qak~~q~q~E~ 720 (753)
.++-+..-+..+.+|+..+.+++..++.+=+
T Consensus 111 ~~~~~~~L~~~l~~L~~ki~eak~k~~~L~a 141 (222)
T PRK10698 111 VDETLARMKKEIGELENKLSETRARQQALML 141 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777776655443
No 116
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=84.86 E-value=23 Score=40.90 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHhHHHHH
Q 004449 572 NQKVMQAARRLSKDKAELKTLRQEKEEVE 600 (753)
Q Consensus 572 nqKvMQAarRL~kdk~ELksLR~EkEE~e 600 (753)
|+++.|--+|+.+|+++|+.--++.++.|
T Consensus 237 nk~akehv~km~kdle~Lq~aEqsl~dlQ 265 (575)
T KOG4403|consen 237 NKKAKEHVNKMMKDLEGLQRAEQSLEDLQ 265 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888999999999987777666654
No 117
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.36 E-value=84 Score=39.83 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=46.2
Q ss_pred HHHHHHHhhhcHHH----HHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHh-------hhhHHHHHHH
Q 004449 575 VMQAARRLSKDKAE----LKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVER-------ANSAVRRLEV 643 (753)
Q Consensus 575 vMQAarRL~kdk~E----LksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQler-------Ans~vrrLE~ 643 (753)
|-.-..+|..++.| |..||.|||.++.- |-.-+|+..-+|--+.--+.|++. +-...++++-
T Consensus 263 ~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~-------~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ 335 (1200)
T KOG0964|consen 263 VEDESEDLKCEIKELENKLTNLREEKEQLKAR-------ETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKD 335 (1200)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHH
Confidence 44444455555544 44566666665544 455677777777777777776664 4556667777
Q ss_pred hhHHHHHHHHHH
Q 004449 644 ENTALRQEMEAA 655 (753)
Q Consensus 644 EnA~lR~EmEAa 655 (753)
++.+...||..-
T Consensus 336 ki~e~~~EL~~I 347 (1200)
T KOG0964|consen 336 KIEEKKDELSKI 347 (1200)
T ss_pred HHHHHHHHHHHh
Confidence 777777777653
No 118
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.23 E-value=1.3e+02 Score=37.99 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=19.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEE 720 (753)
Q Consensus 679 k~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~ 720 (753)
.+..+..+...++.++......+..+++.+++..+.+.+++.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 414 (1042)
T TIGR00618 373 QQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDT 414 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444545555555555555555544444433
No 119
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=84.11 E-value=52 Score=40.81 Aligned_cols=128 Identities=22% Similarity=0.328 Sum_probs=83.3
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhh-----hhhhHHHHHHHHHHhhhhhHh----hhhHHHHHHHhhHHHHHHHHHHHHH
Q 004449 588 ELKTLRQEKEEVERLKKEKQILEEN-----TMKKLSEMENALCKASGQVER----ANSAVRRLEVENTALRQEMEAAKLR 658 (753)
Q Consensus 588 ELksLR~EkEE~erlkKeKq~lEe~-----T~KrLsEmEnAL~kasgQler----Ans~vrrLE~EnA~lR~EmEAaKL~ 658 (753)
...-||.||.+++..+=+|+-|-++ ..|++++.+.-++.-+..+|- -.+.+| +..|.+++.|||-.||+
T Consensus 49 iiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQir--iLQn~c~~lE~ekq~lQ 126 (1265)
T KOG0976|consen 49 IIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIR--ILQNKCLRLEMEKQKLQ 126 (1265)
T ss_pred HHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3456889999999998899887665 558888998888887765543 334444 45689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Q 004449 659 AAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVV------------------QLLQELDQAKALQEQLEE 720 (753)
Q Consensus 659 A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~------------------~l~qel~qak~~q~q~E~ 720 (753)
+.-++.. +- +|+.+ -.+..-...--+|.+||.+..+-|. ++++-++.+....++.|.
T Consensus 127 ~ti~~~q--~d-~ke~e--telE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~ 201 (1265)
T KOG0976|consen 127 DTIQGAQ--DD-KKENE--IEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEE 201 (1265)
T ss_pred HHHHHHH--HH-HHHHH--HHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8766543 22 22222 2344444455556666666655543 344455555555666665
Q ss_pred hh
Q 004449 721 MS 722 (753)
Q Consensus 721 ~~ 722 (753)
++
T Consensus 202 k~ 203 (1265)
T KOG0976|consen 202 KL 203 (1265)
T ss_pred HH
Confidence 44
No 120
>PF15456 Uds1: Up-regulated During Septation
Probab=83.46 E-value=6.5 Score=37.99 Aligned_cols=90 Identities=31% Similarity=0.293 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhhhhh---hhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 596 KEEVERLKKEKQILEEN---TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKR 672 (753)
Q Consensus 596 kEE~erlkKeKq~lEe~---T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~kr 672 (753)
.||++.||||-+.|+.- ++++|. .|..++.|-.-+-+.+..-.+.
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~------------------------------- 68 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRR------------------------------- 68 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccc-------------------------------
Confidence 48999999999999864 666666 8888888777666665544432
Q ss_pred HHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 673 EKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 673 ekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
-.-+++ .-..=.|||+.-.+|+-++.++|.++.....++..++=|
T Consensus 69 ------~~~~~~-~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~rLLe 113 (124)
T PF15456_consen 69 ------ARFSRE-SSLKAEEELAESDRKCEELAQELWKLENRLAEVRQRLLE 113 (124)
T ss_pred ------cCCCcc-hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011 111234666666667777777777776666666655543
No 121
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=83.14 E-value=82 Score=37.01 Aligned_cols=104 Identities=15% Similarity=0.220 Sum_probs=62.1
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 004449 547 DEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCK 626 (753)
Q Consensus 547 DEmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~k 626 (753)
...|-+|..++.+++.+++..-+=-...++....+........+.|..|..++-. . ..++....+|.+....+..
T Consensus 13 ~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~--~---~~~~~i~~~l~~a~~e~~~ 87 (593)
T PF06248_consen 13 RKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQ--S---EIENEIQPQLRDAAEELQE 87 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--h---hccchhHHHHHHHHHHHHH
Confidence 5678899999999999998542222223333333333335556666666544421 1 2355667777777777777
Q ss_pred hhhhhHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 627 ASGQVERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 627 asgQlerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
...|++..+..+.-|+ ...++...++...
T Consensus 88 L~~eL~~~~~~l~~L~-~L~~i~~~l~~~~ 116 (593)
T PF06248_consen 88 LKRELEENEQLLEVLE-QLQEIDELLEEVE 116 (593)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 7777777777666665 4455555544443
No 122
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=83.02 E-value=20 Score=42.56 Aligned_cols=104 Identities=23% Similarity=0.192 Sum_probs=60.6
Q ss_pred hhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHhHHHHHH
Q 004449 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQ----EVSKREKKTQMKFQSWEKQKA 688 (753)
Q Consensus 613 T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~----Ev~krekk~lkk~qsWEkQK~ 688 (753)
+++.|.|+=-+..+.+.|.+.-... .++.|++.++.=-+-.+.+..+-..... ++..+-.-..++ ..|- |+-
T Consensus 489 ~~~al~el~~~~~~~~~~~~~~~~~--n~~sel~sl~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~-q~e 564 (607)
T KOG0240|consen 489 VLTALEELAVNYDQKSEEKESKLSQ--NLKSELQSLQEPSEHQSKRITELLSELRKDLGEIGWKIGTSSEK-RLYI-QLE 564 (607)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhhhh--hhHHHHHhhhhcccchhHHHHHHHHHHHhhhccccccccCCccc-ceee-ehh
Confidence 4455555555555666666532221 2667777776665555555544333211 111111111111 3444 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004449 689 LFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSN 723 (753)
Q Consensus 689 lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~ 723 (753)
.+|.|+.+ |+.+...++.+-+....|++++..
T Consensus 565 ~~~~~~~~---~~~~~~~~~~~~k~~~s~hs~~~~ 596 (607)
T KOG0240|consen 565 VLQSESNT---KMEQEEKELRPCKLLISQHSAKKK 596 (607)
T ss_pred hhhhHHHH---HHHHHHHhhHHHHHHHHHHHHHHh
Confidence 89988865 677788899999999999998864
No 123
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=82.97 E-value=89 Score=38.96 Aligned_cols=134 Identities=18% Similarity=0.219 Sum_probs=68.1
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHh-HHHHHHHHHHH-hhhhhhhh-hhHHHHHHH
Q 004449 547 DEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQE-KEEVERLKKEK-QILEENTM-KKLSEMENA 623 (753)
Q Consensus 547 DEmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~E-kEE~erlkKeK-q~lEe~T~-KrLsEmEnA 623 (753)
.|...+|---.++++..+.+|+-|-. +|++|+.+..-|=+| .||.+.+|+-. +.+.+.|- -+..
T Consensus 255 ~E~d~~lq~sak~ieE~m~qlk~kns--------~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkyl----- 321 (1265)
T KOG0976|consen 255 EEQDMDLQASAKEIEEKMRQLKAKNS--------VLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYL----- 321 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH-----
Confidence 35555666667788888888888853 566665554443332 22333332210 11111110 0111
Q ss_pred HHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q 004449 624 LCKASGQVERANSAVRRLEVENTALRQEMEAAKLR-----------------AAESAASCQEVSKREKKTQMKFQSWEKQ 686 (753)
Q Consensus 624 L~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~-----------------A~ES~~sc~Ev~krekk~lkk~qsWEkQ 686 (753)
+..+-+|..+++.||.++--||+. |-.-+.+.+|+++-+...+.+| -..
T Consensus 322 -----------h~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL---~~l 387 (1265)
T KOG0976|consen 322 -----------HLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSL---LEL 387 (1265)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHH
Confidence 223344555555555555544443 3445566666655554443333 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004449 687 KALFQEELVTEKRKVVQLLQE 707 (753)
Q Consensus 687 K~lLQEELa~EK~Kl~~l~qe 707 (753)
-+.+||-|...|.+|..+.+-
T Consensus 388 ~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 388 QAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred HHHHHHHHHHHHHhhhhhhhc
Confidence 466777777778777766554
No 124
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=82.91 E-value=1.6e+02 Score=38.39 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 004449 700 KVVQLLQELDQAKALQEQLEEMSNETAL 727 (753)
Q Consensus 700 Kl~~l~qel~qak~~q~q~E~~~~~~~~ 727 (753)
.|...+.+|+-.+..-+++=.-|+|..+
T Consensus 1725 ~L~~~~aeL~~Le~r~~~vl~~I~~rv~ 1752 (1758)
T KOG0994|consen 1725 ALEDKAAELAGLEKRVESVLDHINERVL 1752 (1758)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhhh
Confidence 3444444444444444445455555444
No 125
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=82.76 E-value=66 Score=33.69 Aligned_cols=119 Identities=25% Similarity=0.299 Sum_probs=64.6
Q ss_pred HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhh
Q 004449 550 ILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASG 629 (753)
Q Consensus 550 ilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasg 629 (753)
+-.|..++..|+..+.+=.+=-.+..=.-+.-|.+++.+|+.. ++.=+..++.-|...+|||.|+++.|...
T Consensus 94 l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~------~~~Er~~R~erE~~i~krl~e~~~~l~~~-- 165 (247)
T PF06705_consen 94 LDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEA------FENERNEREEREENILKRLEEEENRLQEK-- 165 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3445555555555554443333333333334444444444322 23333345555888999999999887643
Q ss_pred hhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004449 630 QVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKF 680 (753)
Q Consensus 630 QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~ 680 (753)
|+ ......|...+.|+.+++..+-.-.......+-..-.|-..+|.-
T Consensus 166 -i~---~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~ 212 (247)
T PF06705_consen 166 -IE---KEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNA 212 (247)
T ss_pred -HH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 33 234455777888888888777654444444444333333333333
No 126
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=82.71 E-value=66 Score=41.20 Aligned_cols=91 Identities=18% Similarity=0.259 Sum_probs=54.8
Q ss_pred hhhhhhHHHHHHHHHHh-hhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHhHHHHHH
Q 004449 611 ENTMKKLSEMENALCKA-SGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQ-MKFQSWEKQKA 688 (753)
Q Consensus 611 e~T~KrLsEmEnAL~ka-sgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~l-kk~qsWEkQK~ 688 (753)
..+++||.|.++.|... ...-.-..+....|++|.+.+.++.+...+.. .+...-+|+.+.....+ ++.+.-|.+-.
T Consensus 147 ~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l-~s~~~~~~L~~~q~dl~~~~~~~l~~~~~ 225 (1109)
T PRK10929 147 TEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQ-LSANNRQELARLRSELAKKRSQQLDAYLQ 225 (1109)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888887652 11122233334456666666666655555433 37777788776655433 34555567777
Q ss_pred HHHHHHHHHHHHHH
Q 004449 689 LFQEELVTEKRKVV 702 (753)
Q Consensus 689 lLQEELa~EK~Kl~ 702 (753)
.||+.|...+.+-+
T Consensus 226 ~Lq~~in~kR~~~s 239 (1109)
T PRK10929 226 ALRNQLNSQRQREA 239 (1109)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888777655443
No 127
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=82.56 E-value=1.2e+02 Score=36.52 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=10.3
Q ss_pred hhhHHHHHHHhhHHHHHHHH
Q 004449 634 ANSAVRRLEVENTALRQEME 653 (753)
Q Consensus 634 Ans~vrrLE~EnA~lR~EmE 653 (753)
-|-.|+.++.++++|+++++
T Consensus 314 ~hP~v~~l~~qi~~l~~~i~ 333 (754)
T TIGR01005 314 NHPRVVAAKSSLADLDAQIR 333 (754)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555543
No 128
>PF15294 Leu_zip: Leucine zipper
Probab=82.50 E-value=16 Score=39.85 Aligned_cols=44 Identities=25% Similarity=0.343 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 004449 682 SWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNETALI 728 (753)
Q Consensus 682 sWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~ 728 (753)
.-+++..-|+++|..+|+.|..+|.+|..+ .++.|+|..|++.+
T Consensus 212 d~~~~~k~L~e~L~~~KhelL~~QeqL~~a---ekeLekKfqqT~ay 255 (278)
T PF15294_consen 212 DKESQQKALEETLQSCKHELLRVQEQLSLA---EKELEKKFQQTAAY 255 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhcc---hhhHHHHhCccHHH
Confidence 344567779999999999999999986655 56888888887643
No 129
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=82.45 E-value=69 Score=38.13 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=36.3
Q ss_pred HHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHH
Q 004449 577 QAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQ 650 (753)
Q Consensus 577 QAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~ 650 (753)
++++..++=..++..|+-|.++....=.+++-.=..+++++.+-+++|+...+++.-+++....||.|...|++
T Consensus 103 e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~ 176 (546)
T KOG0977|consen 103 ETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKA 176 (546)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444454444444322222222233456666666666666666666666655555544444333
No 130
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.32 E-value=22 Score=44.86 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=66.2
Q ss_pred hhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 630 QVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (753)
Q Consensus 630 QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~ 709 (753)
.+....+-+..||+.++-++.+|++.|++-.+-. .-++..+.+-..+|.+|...+++|-....++.
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~--------------~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~ 742 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNE--------------LELQRTESEIDEFGPEISEIKRKLQNREGEMK 742 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHH
Confidence 6666667888999999999999999996533221 12677788888899999988888888888888
Q ss_pred HHHHHHHHHHHhhhhcccc
Q 004449 710 QAKALQEQLEEMSNETALI 728 (753)
Q Consensus 710 qak~~q~q~E~~~~~~~~~ 728 (753)
..+...+++|.++=....-
T Consensus 743 ~L~~~~n~ved~if~~f~~ 761 (1141)
T KOG0018|consen 743 ELEERMNKVEDRIFKGFCR 761 (1141)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 8888888888877555443
No 131
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.27 E-value=44 Score=41.36 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=42.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004449 676 TQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSN 723 (753)
Q Consensus 676 ~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~ 723 (753)
..-|+-+..+|+.-|+=++++.+.|+.+|.+-+...++-.+++|.+..
T Consensus 902 l~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~eeie~e~~ 949 (970)
T KOG0946|consen 902 LSLKIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPVEEIEDEKV 949 (970)
T ss_pred chhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCChhhHHhhhh
Confidence 344688999999999999999999999999999999998888887653
No 132
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.26 E-value=16 Score=37.39 Aligned_cols=82 Identities=22% Similarity=0.300 Sum_probs=54.2
Q ss_pred HhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH----HHH
Q 004449 626 KASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEK----RKV 701 (753)
Q Consensus 626 kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK----~Kl 701 (753)
+...++++.+..+.+++.++++++.+.+.+|-.-.++ ....+.|.+++.-+++...|+.||..-+ .+|
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~--------~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i 137 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES--------EEREELLEELEELKKELKELKKELEKYSENDPEKI 137 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3444555556666677777777777777776555555 3334478888888999999999998443 356
Q ss_pred HHHHHHHHHHHHHH
Q 004449 702 VQLLQELDQAKALQ 715 (753)
Q Consensus 702 ~~l~qel~qak~~q 715 (753)
.++.+++..++...
T Consensus 138 ~~~~~~~~~~~~~a 151 (188)
T PF03962_consen 138 EKLKEEIKIAKEAA 151 (188)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665555543
No 133
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=82.24 E-value=8.8 Score=38.88 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=67.2
Q ss_pred hhhHHH-HHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 634 ANSAVR-RLEVENTALRQEMEAAKLR-AAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (753)
Q Consensus 634 Ans~vr-rLE~EnA~lR~EmEAaKL~-A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qa 711 (753)
=||.|| +.+.+++.-+++..--|.. ..=+...|...+..-+...-..+.++.+...|++|++.-+.++.+|+.+++..
T Consensus 51 WNs~VRkqY~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 51 WNAYVRKQYEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666 3566666555555443321 33445667777777777777788899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcc
Q 004449 712 KALQEQLEEMSNETA 726 (753)
Q Consensus 712 k~~q~q~E~~~~~~~ 726 (753)
++....+|.....-+
T Consensus 131 ~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 131 RQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777776654433
No 134
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.21 E-value=22 Score=36.97 Aligned_cols=77 Identities=10% Similarity=0.260 Sum_probs=40.4
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHH
Q 004449 610 EENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKAL 689 (753)
Q Consensus 610 Ee~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~l 689 (753)
+...+-||-++|..|.++..+++.++.. +..+.+++..+.+.++-. ...-+.|...
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~---~~~~~~~l~~~~~~~~~~---------------------~~~L~~~n~~ 143 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNT---WNQRTAEMQQKVAQSDSV---------------------INGLKEENQK 143 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHH
Confidence 3456677777777777777777665533 222333333322221111 1224556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004449 690 FQEELVTEKRKVVQLLQELDQ 710 (753)
Q Consensus 690 LQEELa~EK~Kl~~l~qel~q 710 (753)
|++||..-+.++..|..+++.
T Consensus 144 L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 144 LKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666555555443
No 135
>PTZ00121 MAEBL; Provisional
Probab=82.15 E-value=1.9e+02 Score=38.53 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccC
Q 004449 705 LQELDQAKALQEQLEEMSNETALISD 730 (753)
Q Consensus 705 ~qel~qak~~q~q~E~~~~~~~~~~~ 730 (753)
|+...-+..++.-++.++.+..++-|
T Consensus 1798 QqV~dEVdkY~AIIeqrIQqNLlv~~ 1823 (2084)
T PTZ00121 1798 KKIKDIFDNFANIIEGGKEGNLVIND 1823 (2084)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccc
Confidence 33333444445555666666666554
No 136
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=82.10 E-value=1.4e+02 Score=37.02 Aligned_cols=151 Identities=23% Similarity=0.317 Sum_probs=93.5
Q ss_pred HHHHHHHHhhhcHHHHHHHHHhHHHHHH----HHHHHhhhhh-----------------hhhhhHHHHHHHHHHhhhhhH
Q 004449 574 KVMQAARRLSKDKAELKTLRQEKEEVER----LKKEKQILEE-----------------NTMKKLSEMENALCKASGQVE 632 (753)
Q Consensus 574 KvMQAarRL~kdk~ELksLR~EkEE~er----lkKeKq~lEe-----------------~T~KrLsEmEnAL~kasgQle 632 (753)
|+=++..-|+.-.+||-.|..+.+.... ++.-...|-+ .=+-||.+-+.-|.|++.|++
T Consensus 288 k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~ 367 (775)
T PF10174_consen 288 KMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIE 367 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777788778777777666553322 2222222211 124788999999999999999
Q ss_pred hhhhHHHHHHHhhHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHH--------------------HhHHHHHhHHHHHHH
Q 004449 633 RANSAVRRLEVENTALRQEMEAAK--LRAAES-AASCQEVSKREK--------------------KTQMKFQSWEKQKAL 689 (753)
Q Consensus 633 rAns~vrrLE~EnA~lR~EmEAaK--L~A~ES-~~sc~Ev~krek--------------------k~lkk~qsWEkQK~l 689 (753)
+++.-.-++.+|+..++-.++... ++.... ..++.+.++..- ..+.++.-|...|..
T Consensus 368 ~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker 447 (775)
T PF10174_consen 368 KLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKER 447 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Confidence 999999999999999988777654 332222 244555553322 334556677778888
Q ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 690 FQEELVTEK--------RKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 690 LQEELa~EK--------~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
+++.|...+ ..+...+.++.+.+.-.+.++..+-|
T Consensus 448 ~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsE 490 (775)
T PF10174_consen 448 LQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSE 490 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 888876553 33344444555555444444444433
No 137
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=82.10 E-value=1.5e+02 Score=37.47 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 683 WEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (753)
Q Consensus 683 WEkQK~lLQEELa~EK~Kl~~l~qel~qak~~ 714 (753)
.+.+...+++++.+....+..+.+.|.+.+..
T Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 858 (1047)
T PRK10246 827 IQQELAQLAQQLRENTTRQGEIRQQLKQDADN 858 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666655555555555555444443
No 138
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=81.80 E-value=35 Score=37.59 Aligned_cols=12 Identities=25% Similarity=0.263 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 004449 693 ELVTEKRKVVQL 704 (753)
Q Consensus 693 ELa~EK~Kl~~l 704 (753)
|+..-|.++..|
T Consensus 272 Ei~~Lk~~~~~L 283 (312)
T smart00787 272 EIEKLKEQLKLL 283 (312)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 139
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=81.48 E-value=1.4e+02 Score=36.63 Aligned_cols=142 Identities=22% Similarity=0.265 Sum_probs=88.6
Q ss_pred HhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhh
Q 004449 566 EWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVEN 645 (753)
Q Consensus 566 ewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~En 645 (753)
+-|.--|.|=|| ..-|.++++|=..|--|+.-.++...+-|.-|..-.+-|.-.|..+.--..||--+-..-+..-..+
T Consensus 395 Emtk~k~~ke~e-leeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQV 473 (786)
T PF05483_consen 395 EMTKQKNNKEVE-LEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQV 473 (786)
T ss_pred HHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444 3334444444444444444444444444443444445566666666666777777777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 646 TALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQEL 708 (753)
Q Consensus 646 A~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel 708 (753)
.+|+.|.|.-||.-.|-..+|..++--.+.-...+..+--..-++|++|..-|.+--.+.+++
T Consensus 474 eeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqi 536 (786)
T PF05483_consen 474 EELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQI 536 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888766555555566666666677777776665544444333
No 140
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=81.45 E-value=71 Score=40.50 Aligned_cols=161 Identities=19% Similarity=0.215 Sum_probs=90.4
Q ss_pred HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHH---HHH
Q 004449 550 ILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENA---LCK 626 (753)
Q Consensus 550 ilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnA---L~k 626 (753)
+-+|-..++-|+.||.|-+| -..|--.-|-.-++|+..||+|-+|..-.++--..-=+.+--=-.-||.+ -+-
T Consensus 179 lAdle~kir~LrqElEEK~e----nll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~yke 254 (1195)
T KOG4643|consen 179 LADLEKKIRTLRQELEEKFE----NLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKE 254 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccch
Confidence 34566677778888887773 34444555666678888899888876554331110000000000011111 122
Q ss_pred hhhhhHhhhhHHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004449 627 ASGQVERANSAVRRLEVENTALRQEME--AAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQL 704 (753)
Q Consensus 627 asgQlerAns~vrrLE~EnA~lR~EmE--AaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l 704 (753)
+.+.+|+-.+.|-+|+-.|+.|-.|.| -+.|+-.+.-.--.... .-+.-..++-..++.|..+.++|+++|
T Consensus 255 rlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tle-------seiiqlkqkl~dm~~erdtdr~kteeL 327 (1195)
T KOG4643|consen 255 RLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLE-------SEIIQLKQKLDDMRSERDTDRHKTEEL 327 (1195)
T ss_pred hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChH-------HHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 345566777788888888888865544 33344333221100000 011223345566788889999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 004449 705 LQELDQAKALQEQLEEM 721 (753)
Q Consensus 705 ~qel~qak~~q~q~E~~ 721 (753)
+.|-.+...+++|+-.-
T Consensus 328 ~eEnstLq~q~eqL~~~ 344 (1195)
T KOG4643|consen 328 HEENSTLQVQKEQLDGQ 344 (1195)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99988877777665443
No 141
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=81.03 E-value=15 Score=40.91 Aligned_cols=93 Identities=33% Similarity=0.486 Sum_probs=72.6
Q ss_pred HHhhhcHHHHHHHHHhHHHH-HHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 004449 580 RRLSKDKAELKTLRQEKEEV-ERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR 658 (753)
Q Consensus 580 rRL~kdk~ELksLR~EkEE~-erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~ 658 (753)
||+++-+.||..+-.|||.. +|||.|.+.+|- .++.||.+|..|-+|.|+-.++
T Consensus 8 ~ri~~li~~la~~~~~~e~~~~~~~~~~~~~e~-------------------------~~~~l~~~~~~~~~~~~~~~~q 62 (328)
T PF15369_consen 8 RRIANLIKELARVSEEKEVTEERLKAEQESFEK-------------------------KIRQLEEQNELIIKEREDLQQQ 62 (328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHhHHHHHHHHHHHHH
Confidence 67777778888888888876 467777777662 4678889999999999998754
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 659 AAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQL 718 (753)
Q Consensus 659 A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~ 718 (753)
-+-|||++. +.|.=|+.+..||..-.-+|.+|+....++
T Consensus 63 ----yrecqell~-----------------lyq~ylseqq~kl~~s~~~l~~~~~~~q~v 101 (328)
T PF15369_consen 63 ----YRECQELLS-----------------LYQKYLSEQQEKLTMSLSELSAARMKEQQV 101 (328)
T ss_pred ----HHHHHHHHH-----------------HHHHHHHHHHHHHhcCHHHhhhhhhhhccC
Confidence 466999874 667778888899988888888888766553
No 142
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=80.99 E-value=98 Score=34.46 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHHHHh
Q 004449 568 TEWANQKVMQAARRLSKDKAELKTLRQE 595 (753)
Q Consensus 568 tdWAnqKvMQAarRL~kdk~ELksLR~E 595 (753)
.+|..+++-++-.+|..--..|...|++
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566665555555555555555554443
No 143
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=80.79 E-value=79 Score=33.28 Aligned_cols=144 Identities=26% Similarity=0.337 Sum_probs=72.8
Q ss_pred HhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhh---HHHHHHHHHHhhh
Q 004449 553 LIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKK---LSEMENALCKASG 629 (753)
Q Consensus 553 Lv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~Kr---LsEmEnAL~kasg 629 (753)
|=.|++|.|.++- |-+.-+-.-++-|+.+|-+-+. .....+.|.+....| |..-||.|.....
T Consensus 15 LKqQLke~q~E~~-----------~K~~Eiv~Lr~ql~e~~~~l~~---~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~ 80 (202)
T PF06818_consen 15 LKQQLKESQAEVN-----------QKDSEIVSLRAQLRELRAELRN---KESQIQELQDSLRTKQLELEVCENELQRKKN 80 (202)
T ss_pred HHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhHhHHHhHHHHHHHhC
Confidence 5567777777652 1122222333333333333322 222334444444433 3333566666666
Q ss_pred hhHhhhhHHHHHHHhhHHHHHHHHHH--------HHHHHHHHHH-------HHHHHHHHHHhHHHH-----HhHHHHHHH
Q 004449 630 QVERANSAVRRLEVENTALRQEMEAA--------KLRAAESAAS-------CQEVSKREKKTQMKF-----QSWEKQKAL 689 (753)
Q Consensus 630 QlerAns~vrrLE~EnA~lR~EmEAa--------KL~A~ES~~s-------c~Ev~krekk~lkk~-----qsWEkQK~l 689 (753)
+.+.=.-.+..||.|++.||.+...+ .+...+-+.. ...-++++-..|+.= +.=|.|..-
T Consensus 81 Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~ 160 (202)
T PF06818_consen 81 EAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSS 160 (202)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 66555567888899999999888776 1222111111 122233333333322 223444455
Q ss_pred HHHHH---HHHHHHHHHHHHHHHH
Q 004449 690 FQEEL---VTEKRKVVQLLQELDQ 710 (753)
Q Consensus 690 LQEEL---a~EK~Kl~~l~qel~q 710 (753)
|..|- .+||+||-.-|++|.+
T Consensus 161 Fe~ER~~W~eEKekVi~YQkQLQ~ 184 (202)
T PF06818_consen 161 FEQERRTWQEEKEKVIRYQKQLQQ 184 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66664 3578888777777765
No 144
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=80.71 E-value=83 Score=33.72 Aligned_cols=52 Identities=21% Similarity=0.327 Sum_probs=28.3
Q ss_pred HHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 004449 673 EKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNETA 726 (753)
Q Consensus 673 ekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~ 726 (753)
..+...+|+.|+..|..-+++-. ++.+ ...++..+...+.+++.|..|.+=|
T Consensus 179 ~e~a~~~~q~W~~kK~~e~~~~r-~~~~-~~~~~~~~e~~eRk~~ae~A~~~Wl 230 (264)
T PF13904_consen 179 QEEAKQRYQEWERKKKEEQQQKR-EEER-EKEQQKQQEEQERKEQAEEAFQKWL 230 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999999876444322 1221 1222233334445566677766644
No 145
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.68 E-value=1.2e+02 Score=35.35 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=45.3
Q ss_pred HhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 626 KASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLL 705 (753)
Q Consensus 626 kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~ 705 (753)
-|+-|+|.-+..+|-||.||.+||-+.---| ..|-++..-.++....|.+---|-+-.|++-...-.+|-+.|
T Consensus 294 easle~Enlqmr~qqleeentelRs~~arlk-------sl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq 366 (502)
T KOG0982|consen 294 EASLEKENLQMRDQQLEEENTELRSLIARLK-------SLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQ 366 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667778888899999999999987643322 234444444445555555555555555555444444444444
Q ss_pred HHHH
Q 004449 706 QELD 709 (753)
Q Consensus 706 qel~ 709 (753)
++-+
T Consensus 367 ~eke 370 (502)
T KOG0982|consen 367 EEKE 370 (502)
T ss_pred HhhH
Confidence 4433
No 146
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=80.43 E-value=1.3e+02 Score=35.88 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=8.8
Q ss_pred HHHHHHHHhhhcHHHHHHHHH
Q 004449 574 KVMQAARRLSKDKAELKTLRQ 594 (753)
Q Consensus 574 KvMQAarRL~kdk~ELksLR~ 594 (753)
++.+...++.+=..||..|.+
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~ 412 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDK 412 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 147
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=80.34 E-value=19 Score=40.01 Aligned_cols=7 Identities=14% Similarity=0.695 Sum_probs=2.8
Q ss_pred hHHHHHH
Q 004449 547 DEIILKL 553 (753)
Q Consensus 547 DEmilkL 553 (753)
.++++.|
T Consensus 86 GqvL~~L 92 (390)
T PRK15136 86 GDVLVTL 92 (390)
T ss_pred CCEEEEE
Confidence 3344433
No 148
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=80.11 E-value=48 Score=42.05 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=6.9
Q ss_pred cccCCCCchhH
Q 004449 538 EHLVPQDKRDE 548 (753)
Q Consensus 538 ~~~VP~D~KDE 548 (753)
+.|-++..|++
T Consensus 424 g~~g~r~eke~ 434 (1021)
T PTZ00266 424 GHYGGRVDKDH 434 (1021)
T ss_pred CccccccchhH
Confidence 45666666665
No 149
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=79.81 E-value=82 Score=32.84 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=9.1
Q ss_pred chhHHHHHHhHHHHHHHHHH
Q 004449 545 KRDEIILKLIPRVRELHNQL 564 (753)
Q Consensus 545 ~KDEmilkLv~rv~eLq~ql 564 (753)
+|++.|.+|=.+...-..++
T Consensus 15 e~~~~i~~L~~q~~~~~~~i 34 (206)
T PF14988_consen 15 EKEKKIEKLWKQYIQQLEEI 34 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555544444333333
No 150
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.63 E-value=29 Score=38.03 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=14.0
Q ss_pred hHhhhhHHHHHHHhhHHHHHHHHHHHH
Q 004449 631 VERANSAVRRLEVENTALRQEMEAAKL 657 (753)
Q Consensus 631 lerAns~vrrLE~EnA~lR~EmEAaKL 657 (753)
++.....++.|+.|..++.+|.+...-
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~ 71 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEK 71 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666666555554433
No 151
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=79.59 E-value=1.2e+02 Score=36.06 Aligned_cols=76 Identities=29% Similarity=0.425 Sum_probs=57.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 004449 641 LEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQA-KALQEQLE 719 (753)
Q Consensus 641 LE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qa-k~~q~q~E 719 (753)
.+.++.+|-.++.-|--.|.--...|+.+.+| |..-|++|..+.+||...+++|..|+.||+-. +++++|+-
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~r-------L~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs 490 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKR-------LESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLS 490 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 35567777777777776777777777766554 66668888889999999999999999999755 46777777
Q ss_pred Hhhh
Q 004449 720 EMSN 723 (753)
Q Consensus 720 ~~~~ 723 (753)
.|..
T Consensus 491 ~MSE 494 (518)
T PF10212_consen 491 MMSE 494 (518)
T ss_pred HHHH
Confidence 6654
No 152
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=79.58 E-value=36 Score=35.07 Aligned_cols=49 Identities=29% Similarity=0.398 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESA 663 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~ 663 (753)
.+|.|++.......++.+...+.+.+|+.+...|..+.+.++++=...+
T Consensus 138 ~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 138 MKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777777778888888888888888888888888877654443
No 153
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=79.36 E-value=72 Score=33.21 Aligned_cols=136 Identities=22% Similarity=0.288 Sum_probs=83.2
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHH-HH
Q 004449 585 DKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAE-SA 663 (753)
Q Consensus 585 dk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~E-S~ 663 (753)
+.++|..|++..++. +..+.-.-++=+.+.|.-+....+.++.+-..+..=-.+.-+-++|.-..++++.= ..
T Consensus 47 ~rA~LNKl~k~id~~------RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~~k~~~i~~~~~~~ 120 (215)
T PF07083_consen 47 DRAELNKLKKAIDDK------RKEIKKEYSKPIKEFEAKIKELIAPIDEASDKIDEQIKEFEEKEKEEKREKIKEYFEEM 120 (215)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665555432 22334445566777777777777777777666555444444445554444444421 11
Q ss_pred HHHHHH----HH--HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCcc
Q 004449 664 ASCQEV----SK--REKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNETALISDPWR 733 (753)
Q Consensus 664 ~sc~Ev----~k--rekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~~~~~~ 733 (753)
.....| .. ..-+.+.+.-+|-+ ..+||.+ .+..+.+++++.+..+..++..-.+..|-.+||-
T Consensus 121 ~~~~~v~~~~fe~~~~~~wlnks~s~kk----~~eei~~---~i~~~~~~~~~~~~~~~~i~~~A~~~~l~~~~yi 189 (215)
T PF07083_consen 121 AEEYGVDPEPFERIIKPKWLNKSYSLKK----IEEEIDD---QIDKIKQDLEEIKAAKQAIEEKAEEYGLPADPYI 189 (215)
T ss_pred HHHcCCChHHHhhhcchHHhhcCCcHHH----HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 111111 11 33455555555544 6777776 7778888999999999999998888899999985
No 154
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=79.26 E-value=0.61 Score=56.87 Aligned_cols=160 Identities=26% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHH-HHHHHhHHHHHHHHHHHhhhhhhhh---hhHHHHHHHHHH
Q 004449 551 LKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAEL-KTLRQEKEEVERLKKEKQILEENTM---KKLSEMENALCK 626 (753)
Q Consensus 551 lkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~EL-ksLR~EkEE~erlkKeKq~lEe~T~---KrLsEmEnAL~k 626 (753)
-+|-.+|.+|+.+|-+=.+=+ .-++.-++|.-.+.+.| .-|++|++-.+.+.+.|+.||.... -||.|+|.+-.+
T Consensus 661 r~le~~i~~l~~eleE~~~~~-~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~ 739 (859)
T PF01576_consen 661 RKLEAEIQQLEEELEEEQSEA-EAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALK 739 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345555555555554432211 11233333333444444 4578899999999999999998754 699999986544
Q ss_pred hhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 627 ASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQ 706 (753)
Q Consensus 627 asgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~q 706 (753)
- ....|.+||+.+.+|-.+.++-...-.+...+...+=+|-|.....+.-=-++-.-+||.+..-..||..+.+
T Consensus 740 ~------~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~kr 813 (859)
T PF01576_consen 740 G------GKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKR 813 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c------cccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 2346777777777777777777777777766665555554444333222223334455555555566666665
Q ss_pred HHHHHHHHHHH
Q 004449 707 ELDQAKALQEQ 717 (753)
Q Consensus 707 el~qak~~q~q 717 (753)
+++.|.....+
T Consensus 814 q~eeaEe~~~~ 824 (859)
T PF01576_consen 814 QLEEAEEEASR 824 (859)
T ss_dssp -----------
T ss_pred hhhhHHHHHHH
Confidence 55555444333
No 155
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=79.20 E-value=1.2e+02 Score=36.87 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=66.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHH------HHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhh
Q 004449 561 HNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKE------EVERLKKEKQILEENTMKKLSEMENALCKASGQVERA 634 (753)
Q Consensus 561 q~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkE------E~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerA 634 (753)
..+...=.+|.++++-+.-.+|..=-.+|...|++.. |++-+-..-..| ..+|.+++..+...+...-.-
T Consensus 262 ~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l----~~ql~~l~~~~~~l~~~~~~~ 337 (726)
T PRK09841 262 AAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNV----DNQLNELTFREAEISQLYKKD 337 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccc
Confidence 3344444677777777777777766666666666541 121111111111 122333333333333334444
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 635 NSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (753)
Q Consensus 635 ns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qa 711 (753)
|-.|+.|..+.+.|+++++.. +..+..+...|.|-.-|+.|...-+.-...|.+..+++
T Consensus 338 hP~v~~l~~~~~~L~~~~~~l------------------~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~ 396 (726)
T PRK09841 338 HPTYRALLEKRQTLEQERKRL------------------NKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQEL 396 (726)
T ss_pred CchHHHHHHHHHHHHHHHHHH------------------HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666554432 22344556666666667777766666666665555554
No 156
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=79.06 E-value=1.5e+02 Score=35.40 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHHHHhhhhhHhh--hhHHHHHHHhhHHHHHHH
Q 004449 613 TMKKLSEMENALCKASGQVERA--NSAVRRLEVENTALRQEM 652 (753)
Q Consensus 613 T~KrLsEmEnAL~kasgQlerA--ns~vrrLE~EnA~lR~Em 652 (753)
.++++.++|..|.....+|.++ +-.+..|+.+..++.+++
T Consensus 396 ~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l 437 (650)
T TIGR03185 396 LLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNEL 437 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 3455556666666666655554 223344444444443333
No 157
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=78.82 E-value=58 Score=35.87 Aligned_cols=129 Identities=29% Similarity=0.420 Sum_probs=90.8
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHH
Q 004449 564 LHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEV 643 (753)
Q Consensus 564 lqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~ 643 (753)
+.||+|=-.-||.|-+.-|-..+ ++||||+|-- -=-|.-+|-||.|....+|-..+-.--|.-
T Consensus 5 ~eEWKeGL~~~aLqKIqelE~Ql-------------dkLkKE~qQr----QfQleSlEAaLqKQKqK~e~ek~e~s~LkR 67 (307)
T PF10481_consen 5 VEEWKEGLPTRALQKIQELEQQL-------------DKLKKERQQR----QFQLESLEAALQKQKQKVEEEKNEYSALKR 67 (307)
T ss_pred HhHHhccCCHHHHHHHHHHHHHH-------------HHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 46888888889988887776544 3444443321 013566788888888777665544444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004449 644 ENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSN 723 (753)
Q Consensus 644 EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~ 723 (753)
||--| ..+|..+-|..+|..--++.=|.|-..|.--|...|.-|..|.++|.+ +..++| ++.
T Consensus 68 Enq~l--------------~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr---~KsELE-rsQ 129 (307)
T PF10481_consen 68 ENQSL--------------MESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKR---CKSELE-RSQ 129 (307)
T ss_pred hhhhH--------------HHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHH
Confidence 44333 467999999999999999999999999999999999999888888755 445555 444
Q ss_pred hccc
Q 004449 724 ETAL 727 (753)
Q Consensus 724 ~~~~ 727 (753)
+++.
T Consensus 130 ~~~~ 133 (307)
T PF10481_consen 130 QAAS 133 (307)
T ss_pred Hhhc
Confidence 4444
No 158
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=78.69 E-value=2.2e+02 Score=37.24 Aligned_cols=91 Identities=22% Similarity=0.240 Sum_probs=44.8
Q ss_pred HHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHH--HHHHHH--HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH
Q 004449 624 LCKASGQVERANSAVRRLEVENTALRQEMEAAKLR--AAESAA--SCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKR 699 (753)
Q Consensus 624 L~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~--A~ES~~--sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~ 699 (753)
+..+..+++++...+...+.+.+.+..+...+..+ ..+-.. -..++..+-.....++..-.++..-+..++.+-+.
T Consensus 877 ~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~ 956 (1353)
T TIGR02680 877 AAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEE 956 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666666555554333 222221 14445555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHH
Q 004449 700 KVVQLLQELDQAKAL 714 (753)
Q Consensus 700 Kl~~l~qel~qak~~ 714 (753)
++..+.+++.++...
T Consensus 957 ~~~~a~~~~~~a~~~ 971 (1353)
T TIGR02680 957 ARGRAEEKRAEADAT 971 (1353)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555554444443333
No 159
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=78.36 E-value=1.2e+02 Score=37.43 Aligned_cols=78 Identities=22% Similarity=0.234 Sum_probs=37.8
Q ss_pred HhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 626 KASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLL 705 (753)
Q Consensus 626 kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~ 705 (753)
.-+.+++.+....-+++-|+..+.-|.+--+=+++....-|++. |.++..+|..+.=++..++
T Consensus 715 ~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~-----------------k~~~~q~lq~~ll~ve~~~ 777 (961)
T KOG4673|consen 715 QLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIREL-----------------KRKHKQELQEVLLHVELIQ 777 (961)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhhHHHHHHHHHH
Confidence 44455555555555555555555555555555555544444433 2222223333333444555
Q ss_pred HHHHHHHHHHHHHHH
Q 004449 706 QELDQAKALQEQLEE 720 (753)
Q Consensus 706 qel~qak~~q~q~E~ 720 (753)
..++-.++.+.+.|.
T Consensus 778 k~~e~~~~~~~~ler 792 (961)
T KOG4673|consen 778 KDLEREKASRLDLER 792 (961)
T ss_pred HHhhhCHHHHhhccc
Confidence 555555555555554
No 160
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=78.28 E-value=81 Score=38.80 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=23.0
Q ss_pred hhhHHHHHHHhHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhc
Q 004449 203 LPQLEKYILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAM 247 (753)
Q Consensus 203 L~rle~RSL~GLVafLrs~fP~LS~~DAmwyLLlADaDLl~A~am 247 (753)
..+.+.+.|..|...+..+.+.|-. +.. .++.+|+..|.+.
T Consensus 243 ~~~~~~~il~~l~~~i~~~~~~l~~---~~~-~l~~lD~l~a~a~ 283 (782)
T PRK00409 243 EEQEIERILKELSAKVAKNLDFLKF---LNK-IFDELDFIFARAR 283 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHH
Confidence 3445667777777777776654321 111 3445666666554
No 161
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=78.13 E-value=1.2e+02 Score=33.79 Aligned_cols=18 Identities=11% Similarity=0.278 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004449 698 KRKVVQLLQELDQAKALQ 715 (753)
Q Consensus 698 K~Kl~~l~qel~qak~~q 715 (753)
...+..|+++++-+++.-
T Consensus 341 ~~~~~~L~r~~~~~~~~y 358 (444)
T TIGR03017 341 RDEMSVLQRDVENAQRAY 358 (444)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334556666666666653
No 162
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=78.11 E-value=1.5e+02 Score=34.90 Aligned_cols=67 Identities=12% Similarity=0.200 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004449 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKF 680 (753)
Q Consensus 614 ~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~ 680 (753)
.++|...|+.|.+-..+|++-...+.+.|.+....+++.+.-+-...+-...+.+........|.+.
T Consensus 75 e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~ 141 (514)
T TIGR03319 75 RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERI 141 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666555555555554444444333333333444433333344433
No 163
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=78.09 E-value=1.1e+02 Score=33.43 Aligned_cols=130 Identities=17% Similarity=0.254 Sum_probs=76.7
Q ss_pred HHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhh-------hhH
Q 004449 565 HEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERA-------NSA 637 (753)
Q Consensus 565 qewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerA-------ns~ 637 (753)
..-.+|.++.+-++-.+|..-...|...|.+.--+. ...+ -.....-+++++..+-.+..|+... |-.
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d-~~~~----~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFD-PKAQ----SSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-hHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Confidence 345578888888888888887777777777553221 0000 0113344555666665555555433 677
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 638 VRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (753)
Q Consensus 638 vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak 712 (753)
|+.|+.+++.|++++.+..-+...+.. ..+..=..|-.-|+-|...-+.....+.+.+++++
T Consensus 244 v~~l~~~i~~l~~~i~~e~~~i~~~~~-------------~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDEQRNQLSGGLG-------------DSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCC-------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999998887654333222211 01222222445667777777777777766666665
No 164
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.56 E-value=1.8e+02 Score=35.64 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 684 EKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (753)
Q Consensus 684 EkQK~lLQEELa~EK~Kl~~l~qel~qak~ 713 (753)
++|+.-+++-|+.+-++|.++-+++.+++.
T Consensus 684 ~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 684 ESQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777777776666655554
No 165
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=77.40 E-value=12 Score=32.82 Aligned_cols=52 Identities=35% Similarity=0.457 Sum_probs=37.9
Q ss_pred HHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHH
Q 004449 574 KVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEME 653 (753)
Q Consensus 574 KvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmE 653 (753)
+.=+++|++++-..+++.||.|++.+. .||-.|-....+|-.|+..+++|.+
T Consensus 13 rLd~~~rk~~~~~~~~k~L~~ERd~~~----------------------------~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 13 RLDSLTRKNSVHEIENKRLRRERDSAE----------------------------RQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344789999999999999999998662 3444455566667777777777643
No 166
>PRK00106 hypothetical protein; Provisional
Probab=76.38 E-value=1.7e+02 Score=34.76 Aligned_cols=85 Identities=12% Similarity=0.220 Sum_probs=53.9
Q ss_pred HHHHHhhhhhhh--hh-hHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004449 602 LKKEKQILEENT--MK-KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQM 678 (753)
Q Consensus 602 lkKeKq~lEe~T--~K-rLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lk 678 (753)
+++.++.+|... .+ +|...|+.|.+-..+||+-...+.+.|.+....+++++.-+-...+--..+.+........|.
T Consensus 81 i~~~R~ElEkel~eEr~rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le 160 (535)
T PRK00106 81 ARKYREEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELE 160 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444442 33 677778888777777877777777777776666666666665556666666666666666666
Q ss_pred HHHhHHHH
Q 004449 679 KFQSWEKQ 686 (753)
Q Consensus 679 k~qsWEkQ 686 (753)
+.-.+-.+
T Consensus 161 ~~a~lt~~ 168 (535)
T PRK00106 161 RVAALSQA 168 (535)
T ss_pred HHhCCCHH
Confidence 66554443
No 167
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=76.14 E-value=2e+02 Score=35.38 Aligned_cols=182 Identities=20% Similarity=0.200 Sum_probs=94.5
Q ss_pred cCcccCcCcccccCCCCchhHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHh
Q 004449 528 AGILSDDTSLEHLVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQ 607 (753)
Q Consensus 528 ~~i~~D~~~l~~~VP~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq 607 (753)
..+.+| ++ .-+|.+.+|++=.++..-+-.|-.++..|.+=...+.-+ .+.|..+. ..+++..++++.|
T Consensus 376 ~~~~le--~~-k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k----~~~d~~~r-----~~~~~~~~~e~Lq 443 (698)
T KOG0978|consen 376 NELRLE--ML-KSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRK----QALDDAER-----QIRQVEELSEELQ 443 (698)
T ss_pred HHHHHH--HH-hCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHH-----hHHHHHHHHHHHH
Confidence 344555 33 557788888877777777777777777776543333221 12222211 0112222223333
Q ss_pred hhhhhhhhhHH----------HHHHHHHHhhh--------------hhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004449 608 ILEENTMKKLS----------EMENALCKASG--------------QVERANSAVRRLEVENTALRQEMEAAKLRAAESA 663 (753)
Q Consensus 608 ~lEe~T~KrLs----------EmEnAL~kasg--------------QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~ 663 (753)
.++++..-=|+ +|+--+.+-.- .-+++|..+..|.-+...|..++- .|.++...
T Consensus 444 k~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~--~l~~~~~~ 521 (698)
T KOG0978|consen 444 KKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQIL--TLKASVDK 521 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 33333332222 23333333333 345566667777666666554443 33333332
Q ss_pred H--HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004449 664 A--SCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSN 723 (753)
Q Consensus 664 ~--sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~ 723 (753)
. -...+=+++..+....+.-+++.-.++.=|...|.++..+-+.+++.+...+..+++..
T Consensus 522 ~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le 583 (698)
T KOG0978|consen 522 LELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLE 583 (698)
T ss_pred HHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23334445555666666667777777777777777777666666666665555555443
No 168
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=76.11 E-value=58 Score=29.10 Aligned_cols=102 Identities=14% Similarity=0.110 Sum_probs=67.2
Q ss_pred HHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q 004449 618 SEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTE 697 (753)
Q Consensus 618 sEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~E 697 (753)
.++.+.|.......+.....+..|+.....+....+.++-.-......+.+++.+.++.|..-..++.+ -....|.
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~--~~~~~l~-- 78 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKE--NKLKVLE-- 78 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH--
Confidence 356677777777778888888888888888888888888888888888888888777776444333322 2222232
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 698 KRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 698 K~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
.++.++.+.+.+......-+|..+.+
T Consensus 79 -~q~~~l~~~l~~l~~~~~~~e~~l~~ 104 (127)
T smart00502 79 -QQLESLTQKQEKLSHAINFTEEALNS 104 (127)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33344455555555566666555544
No 169
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=76.08 E-value=67 Score=31.08 Aligned_cols=32 Identities=34% Similarity=0.407 Sum_probs=24.5
Q ss_pred hhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 004449 628 SGQVERANSAVRRLEVENTALRQEMEAAKLRA 659 (753)
Q Consensus 628 sgQlerAns~vrrLE~EnA~lR~EmEAaKL~A 659 (753)
..-|++=.+.+|++|+|++.++.|..+..-.-
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r 46 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAER 46 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888899999999999998877654433
No 170
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=75.81 E-value=42 Score=35.61 Aligned_cols=78 Identities=22% Similarity=0.342 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHH----------HHHHHHHhhhhhHhhhhHHHHH
Q 004449 572 NQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSE----------MENALCKASGQVERANSAVRRL 641 (753)
Q Consensus 572 nqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsE----------mEnAL~kasgQlerAns~vrrL 641 (753)
..|+.+..+....=+.|+..++.|--=++.+++|+..|...=|..+.| ||+-|..+..+-++....+++|
T Consensus 7 r~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~ 86 (230)
T PF10146_consen 7 RNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRL 86 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666677777777666777777777776665544433 3444444444444444444444
Q ss_pred HHhhHHHH
Q 004449 642 EVENTALR 649 (753)
Q Consensus 642 E~EnA~lR 649 (753)
..|..-|+
T Consensus 87 ~eey~~Lk 94 (230)
T PF10146_consen 87 YEEYKPLK 94 (230)
T ss_pred HHHHHHHH
Confidence 44433333
No 171
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=75.45 E-value=1.5e+02 Score=33.64 Aligned_cols=24 Identities=8% Similarity=0.242 Sum_probs=12.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Q 004449 638 VRRLEVENTALRQEMEAAKLRAAE 661 (753)
Q Consensus 638 vrrLE~EnA~lR~EmEAaKL~A~E 661 (753)
+-.++.+.+.++.++..++.+-.+
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555666666665555544433
No 172
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=75.18 E-value=53 Score=34.38 Aligned_cols=41 Identities=12% Similarity=0.315 Sum_probs=28.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 680 FQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEE 720 (753)
Q Consensus 680 ~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~ 720 (753)
+..-+.+...|+..++.++.+|+.|+++++++++.+.++..
T Consensus 65 ~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 65 IENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777777777777788888887777777666655
No 173
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=75.15 E-value=1.7e+02 Score=34.13 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=35.9
Q ss_pred CCCchhHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004449 542 PQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLS 583 (753)
Q Consensus 542 P~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~ 583 (753)
..+.-+.+|.....++..|+.+|.+-+.++.+++.++-..-.
T Consensus 245 ~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~ 286 (582)
T PF09731_consen 245 SESDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQR 286 (582)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778999999999999999999999999998876655443
No 174
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=74.78 E-value=94 Score=30.92 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 004449 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR 658 (753)
Q Consensus 616 rLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~ 658 (753)
|..+|++-|+.+...-|.-.-.|..||.+......+.+.+.+.
T Consensus 4 K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~d 46 (140)
T PF10473_consen 4 KFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILD 46 (140)
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444444444444444444444444444444444444444443
No 175
>PRK11281 hypothetical protein; Provisional
Probab=74.55 E-value=2.5e+02 Score=36.32 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 685 KQKALFQEELVTEKRKVVQLLQELDQAKALQEQ 717 (753)
Q Consensus 685 kQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q 717 (753)
.....|=++|...-+++.++.++-.++|+.-++
T Consensus 285 ~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~ 317 (1113)
T PRK11281 285 EINLQLSQRLLKATEKLNTLTQQNLRVKNWLDR 317 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777778888888777777766443
No 176
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=74.48 E-value=3.3e+02 Score=37.04 Aligned_cols=143 Identities=17% Similarity=0.224 Sum_probs=76.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhh--------------hh
Q 004449 547 DEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILE--------------EN 612 (753)
Q Consensus 547 DEmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lE--------------e~ 612 (753)
++-|=..+.-+.-|+.++..|+-=.+.=+-+-=+ .....+|+.+.++.+||+|++..| +-
T Consensus 1270 ~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~------~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~ 1343 (1822)
T KOG4674|consen 1270 KAELQEKVAELKKLEEENDRWKQRNQDLLEKYKD------SDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEK 1343 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666677777777555443322111 111222333335555555444322 11
Q ss_pred hhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 004449 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQE 692 (753)
Q Consensus 613 T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQE 692 (753)
--++|.+..|....-+.+|.+.+..-+||+.-..+.++. +--...+..-...-++...|+...++.=-.-..|-..|++
T Consensus 1344 ~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q-~~el~~~~~~~~~~~e~t~rk~e~~~~k~~~~~e~~sl~e 1422 (1822)
T KOG4674|consen 1344 IKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ-ELELSDKKKAHELMQEDTSRKLEKLKEKLELSEELESLKE 1422 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 225677888888888999999999999999888887776 2222223333444454444444444333334445555555
Q ss_pred HHHH
Q 004449 693 ELVT 696 (753)
Q Consensus 693 ELa~ 696 (753)
+|..
T Consensus 1423 eL~e 1426 (1822)
T KOG4674|consen 1423 ELEE 1426 (1822)
T ss_pred HHHH
Confidence 5543
No 177
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.47 E-value=27 Score=36.37 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=13.1
Q ss_pred CCCcCcccCcCcccccCCCCc
Q 004449 525 CGYAGILSDDTSLEHLVPQDK 545 (753)
Q Consensus 525 ~~~~~i~~D~~~l~~~VP~D~ 545 (753)
.+|..|-++ +.-.-||+.+.
T Consensus 65 ~~w~~Vr~~-~G~~GWV~~~~ 84 (206)
T PRK10884 65 TNYAQIRDS-KGRTAWIPLKQ 84 (206)
T ss_pred CCEEEEEeC-CCCEEeEEHHH
Confidence 467777655 34458998764
No 178
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=74.27 E-value=69 Score=32.12 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Q 004449 639 RRLEVENTALRQEMEAAKLRAAES 662 (753)
Q Consensus 639 rrLE~EnA~lR~EmEAaKL~A~ES 662 (753)
.|++.+++.||.|+|.+|..--..
T Consensus 134 ~ki~~ei~~lr~~iE~~K~~~lr~ 157 (177)
T PF07798_consen 134 NKIDTEIANLRTEIESLKWDTLRW 157 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999876554
No 179
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=74.26 E-value=1.4e+02 Score=32.59 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 660 AESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (753)
Q Consensus 660 ~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak 712 (753)
..+..+|++.+++-- -.-+.+.++-....++|..-+..|-+|..|+++..
T Consensus 171 ~k~~~~~~~~l~~~~---~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 171 EKTQSPMQPALLQRT---LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHhhchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777665432 33455666666777777777777777777765543
No 180
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=74.10 E-value=1 Score=53.59 Aligned_cols=100 Identities=27% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHhHHH-HHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHH
Q 004449 570 WANQKVMQAARRLSKDKAELKTLRQEKEE-VERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTAL 648 (753)
Q Consensus 570 WAnqKvMQAarRL~kdk~ELksLR~EkEE-~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~l 648 (753)
+..++.-.+...|.....++..++...|+ ..+|+.|+..+.....-..+.+.+.+.....+++.+...+..|+.++.++
T Consensus 118 ~l~~~~~~le~el~~~~e~~~~~k~~le~~~~~L~~E~~~~~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l 197 (722)
T PF05557_consen 118 QLEEREEELEEELEEAEEELEQLKRKLEEEKRRLQREKEQLLEEAREEISSLKNELSELERQAENAESQIQSLESELEEL 197 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555555443 33455666666666655666677777777777777788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004449 649 RQEMEAAKLRAAESAASCQEV 669 (753)
Q Consensus 649 R~EmEAaKL~A~ES~~sc~Ev 669 (753)
+.+++-.+-...|....++++
T Consensus 198 ~~~le~~~~~~~e~e~~~~~L 218 (722)
T PF05557_consen 198 KEQLEELQSELQEAEQQLQEL 218 (722)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888877666555555444443
No 181
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=74.04 E-value=1.5e+02 Score=36.78 Aligned_cols=143 Identities=18% Similarity=0.227 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHh-hhhhhhhhhHHHHHHHHHHhhhhhH
Q 004449 554 IPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQ-ILEENTMKKLSEMENALCKASGQVE 632 (753)
Q Consensus 554 v~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq-~lEe~T~KrLsEmEnAL~kasgQle 632 (753)
|++..|--.+|+++-+-|-++.-|+.| + --++|+.+==+.+-++-+...|+. ..||.||| |+..+..-+..|.
T Consensus 107 lrq~eekn~slqerLelaE~~l~qs~r-a-e~lpeveael~qr~~al~~aee~~~~~eer~~k----l~~~~qe~naeL~ 180 (916)
T KOG0249|consen 107 LRQNEEKNRSLQERLELAEPKLQQSLR-A-ETLPEVEAELAQRNAALTKAEEHSGNIEERTRK----LEEQLEELNAELQ 180 (916)
T ss_pred hchhHHhhhhhhHHHHHhhHhhHhHHh-h-hhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHH----HHHHHHHHHHHHH
Confidence 456666667788888899999999988 3 334444321111111111111111 11333333 3344444555566
Q ss_pred hhhhHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 633 RANSAVRRLEVENTALR------QEMEAAKLRAAESAASCQEVSKREKKTQ-MKFQSWEKQKALFQEELVTEKRKVVQLL 705 (753)
Q Consensus 633 rAns~vrrLE~EnA~lR------~EmEAaKL~A~ES~~sc~Ev~krekk~l-kk~qsWEkQK~lLQEELa~EK~Kl~~l~ 705 (753)
||+ ||+|++-+--. -||++--+..-..+-.=.+.+..+...+ |++..+++.|..|+.++..-+.-+.||.
T Consensus 181 rar---qreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 181 RAR---QREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHH---HHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 653 34443321100 0333322222111112222233333333 3456677777788887777776666666
No 182
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=73.97 E-value=1.4e+02 Score=32.67 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 663 AASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLL 705 (753)
Q Consensus 663 ~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~ 705 (753)
.....|+..|...+-.|+-.||-..+.|.+.+..-++|+.+.+
T Consensus 220 Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 220 EKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455555566666677788888888888888888876653
No 183
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=73.81 E-value=1.2e+02 Score=32.78 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=17.9
Q ss_pred HHHHHhhhhhHhhhhHHHH---HHHhhHHHHHHHHHHHHHHH
Q 004449 622 NALCKASGQVERANSAVRR---LEVENTALRQEMEAAKLRAA 660 (753)
Q Consensus 622 nAL~kasgQlerAns~vrr---LE~EnA~lR~EmEAaKL~A~ 660 (753)
..+..+..+++.|.....| |-.+.+--+.++|.++....
T Consensus 121 ~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~ 162 (346)
T PRK10476 121 EQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQR 162 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 3344444444444333333 33455555666666655433
No 184
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=73.66 E-value=85 Score=34.35 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=66.8
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHH
Q 004449 611 ENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALF 690 (753)
Q Consensus 611 e~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lL 690 (753)
+-|..+|.+|-+.|. -|++|+--|-=|....-++..- .+-...+..+-.+..+..+++..++.+-..+
T Consensus 145 ~LS~~dl~e~~~~l~----DLesa~vkV~WLR~~L~Ei~Ea--------~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~ 212 (269)
T PF05278_consen 145 ELSESDLKEMIATLK----DLESAKVKVDWLRSKLEEILEA--------KEIYDQHETREEEKEEKDRKLELKKEELEEL 212 (269)
T ss_pred hhhHHHHHHHHHHHH----HHHHcCcchHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566777766663 5677777776666555555422 2222333344445555667788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004449 691 QEELVTEKRKVVQLLQELDQAKALQEQLEEMS 722 (753)
Q Consensus 691 QEELa~EK~Kl~~l~qel~qak~~q~q~E~~~ 722 (753)
+|||+....+++++++.+..++..--++|.++
T Consensus 213 ~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~ 244 (269)
T PF05278_consen 213 EEELKQKEKEVKEIKERITEMKGRLGELEMES 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888887777776554
No 185
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=73.54 E-value=32 Score=41.18 Aligned_cols=40 Identities=13% Similarity=0.049 Sum_probs=30.2
Q ss_pred HHHHhHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhcc
Q 004449 209 YILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMD 248 (753)
Q Consensus 209 RSL~GLVafLrs~fP~LS~~DAmwyLLlADaDLl~A~am~ 248 (753)
-|+.-|+-|...+.|++=.-|-|.-|...+=||..-..+.
T Consensus 37 ~s~~rllrli~~~kpDIvAvDnvyEL~~~~~~li~il~~l 76 (652)
T COG2433 37 VSLRRLLRLIWSYKPDIVAVDNVYELGADKRDLIRILKRL 76 (652)
T ss_pred hhHHHHHHHHHhcCCCEEEeccHHHHhcChhHHHHHHHhC
Confidence 6777888888888888777777777777777776666654
No 186
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=73.49 E-value=68 Score=39.59 Aligned_cols=63 Identities=38% Similarity=0.501 Sum_probs=44.2
Q ss_pred HHHHHHHHHhH--HHHHHHHHHHhhhhhhhhhhHHHHHHHH-------HHhhhhhHhhhhHHHHHHHhhHHHHHHHHHH-
Q 004449 586 KAELKTLRQEK--EEVERLKKEKQILEENTMKKLSEMENAL-------CKASGQVERANSAVRRLEVENTALRQEMEAA- 655 (753)
Q Consensus 586 k~ELksLR~Ek--EE~erlkKeKq~lEe~T~KrLsEmEnAL-------~kasgQlerAns~vrrLE~EnA~lR~EmEAa- 655 (753)
+-|||+|=.|. -|++|| ++|+|.-+ ..+.-|+|-|=| ++-|..|||+||+.+-..
T Consensus 343 LgELkaLVaeq~DsE~qRL--------------itEvE~cislLPav~g~tniq~EIALA-~QplrsENaqLrRrLriln 407 (861)
T PF15254_consen 343 LGELKALVAEQEDSEVQRL--------------ITEVEACISLLPAVSGSTNIQVEIALA-MQPLRSENAQLRRRLRILN 407 (861)
T ss_pred HHHHHHHHhccchHHHHHH--------------HHHHHHHHHhhhhhhccccchhhhHhh-hhhhhhhhHHHHHHHHHHH
Confidence 45777776644 456666 56777655 467778998876 999999999999876653
Q ss_pred -HHHHHHHH
Q 004449 656 -KLRAAESA 663 (753)
Q Consensus 656 -KL~A~ES~ 663 (753)
+|+..|.+
T Consensus 408 qqlreqe~~ 416 (861)
T PF15254_consen 408 QQLREQEKA 416 (861)
T ss_pred HHHHHHHhh
Confidence 44544444
No 187
>PRK11519 tyrosine kinase; Provisional
Probab=73.18 E-value=1.1e+02 Score=37.10 Aligned_cols=25 Identities=8% Similarity=0.178 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 683 WEKQKALFQEELVTEKRKVVQLLQE 707 (753)
Q Consensus 683 WEkQK~lLQEELa~EK~Kl~~l~qe 707 (753)
-..|...|+.+++..+.++..+.+.
T Consensus 344 l~~~~~~L~~~~~~l~~~~~~lp~~ 368 (719)
T PRK11519 344 LLEKRKALEDEKAKLNGRVTAMPKT 368 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHH
Confidence 3445555666666655555544433
No 188
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=72.91 E-value=48 Score=35.88 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=9.5
Q ss_pred HhhhcHHHHHHHHHhHHHH
Q 004449 581 RLSKDKAELKTLRQEKEEV 599 (753)
Q Consensus 581 RL~kdk~ELksLR~EkEE~ 599 (753)
.|..-+++|...+.+.+..
T Consensus 87 ~l~~a~a~l~~a~a~l~~~ 105 (346)
T PRK10476 87 TVAQAQADLALADAQIMTT 105 (346)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555554444
No 189
>PRK10869 recombination and repair protein; Provisional
Probab=72.49 E-value=2.1e+02 Score=33.86 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=34.1
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhh
Q 004449 672 REKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK-----ALQEQLEEMSNE 724 (753)
Q Consensus 672 rekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak-----~~q~q~E~~~~~ 724 (753)
+-++-|..+..-+.....|++++...+.++.++-++|.+++ .+.+.++..+.+
T Consensus 328 ~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~ 385 (553)
T PRK10869 328 QLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHE 385 (553)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566777888888888888888888877544 345555544443
No 190
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=72.05 E-value=75 Score=38.98 Aligned_cols=98 Identities=27% Similarity=0.269 Sum_probs=70.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004449 586 KAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAAS 665 (753)
Q Consensus 586 k~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~s 665 (753)
++||+.||.+..+.+.- -++ -...++..+.....+|.+..-..+.-......|.+|.-++-..|.|+..+
T Consensus 372 k~ELk~Lk~k~~~~~~~--~~~--------ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~ 441 (717)
T PF09730_consen 372 KAELKALKSKYNELEER--YKQ--------EKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGS 441 (717)
T ss_pred HHHHHHHHHHHHHHHHH--HHH--------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 68999999888776541 111 11234455555566666666666666778888888888888888887766
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 666 CQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (753)
Q Consensus 666 c~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~ 714 (753)
-...|+||.+-..-|++|+.-++...+.
T Consensus 442 ---------------------LnsAQDELvtfSEeLAqLYHHVC~cNge 469 (717)
T PF09730_consen 442 ---------------------LNSAQDELVTFSEELAQLYHHVCMCNGE 469 (717)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3567999999999999999999886543
No 191
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=71.84 E-value=2.1e+02 Score=33.82 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 004449 693 ELVTEKRKVV 702 (753)
Q Consensus 693 ELa~EK~Kl~ 702 (753)
|...|+..|+
T Consensus 325 Eaq~er~~iA 334 (489)
T PF05262_consen 325 EAQQERKEIA 334 (489)
T ss_pred HHHHHHHHHH
Confidence 4444555555
No 192
>PRK12704 phosphodiesterase; Provisional
Probab=71.82 E-value=1.5e+02 Score=34.92 Aligned_cols=17 Identities=29% Similarity=0.262 Sum_probs=8.3
Q ss_pred hhhhhhhhhHHHHHHHH
Q 004449 608 ILEENTMKKLSEMENAL 624 (753)
Q Consensus 608 ~lEe~T~KrLsEmEnAL 624 (753)
..++...++-.|+|..+
T Consensus 61 eaeeE~~~~R~Ele~e~ 77 (520)
T PRK12704 61 EAKEEIHKLRNEFEKEL 77 (520)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555555444
No 193
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=71.62 E-value=51 Score=37.28 Aligned_cols=41 Identities=27% Similarity=0.228 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCCccccCcchhhhcccccCC
Q 004449 703 QLLQELDQAKALQEQLEEMSNETALISDPWRYDYNACWFQQSALSSP 749 (753)
Q Consensus 703 ~l~qel~qak~~q~q~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (753)
.+..++...++..+++|. + .|++|| ||.+.||.+=.+-.-|
T Consensus 96 ~a~~e~~~l~~~l~~le~---~-~ll~~~--~D~~~~~leI~aG~GG 136 (367)
T PRK00578 96 EAEAELKALEKKLAALEL---E-RLLSGE--YDANNAILTIHAGAGG 136 (367)
T ss_pred HHHHHHHHHHHHHHHHHH---H-HhcCCC--cccCCeEEEEecCCCc
Confidence 344444444444444442 2 556788 7999999987665544
No 194
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=71.50 E-value=20 Score=42.96 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=12.8
Q ss_pred hhHHHHHHHhhHHHHHHH
Q 004449 635 NSAVRRLEVENTALRQEM 652 (753)
Q Consensus 635 ns~vrrLE~EnA~lR~Em 652 (753)
.+.+..|..||+.|++.+
T Consensus 565 ~~~l~~L~~En~~L~~~l 582 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARL 582 (722)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467777777777777655
No 195
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=71.49 E-value=38 Score=35.23 Aligned_cols=71 Identities=27% Similarity=0.322 Sum_probs=47.0
Q ss_pred hhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHH
Q 004449 582 LSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (753)
Q Consensus 582 L~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAa 655 (753)
+..-..+|+.+|++.+++-+-+|-.|.---.+++.|..-=..+-...-++++ ++.+||.|+.++|+++...
T Consensus 145 ~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~---a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 145 LKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEV---ACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4444567888899999999888888876555555554444444444445544 4566777777777776544
No 196
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=71.46 E-value=1.1e+02 Score=30.31 Aligned_cols=28 Identities=11% Similarity=0.380 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLE 642 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE 642 (753)
++|.++++-+....++++.-+.....+.
T Consensus 95 ~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 95 EELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4555555555555555544444444333
No 197
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=71.46 E-value=42 Score=38.72 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=16.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 681 QSWEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (753)
Q Consensus 681 qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~ 714 (753)
.....|...|..++.+...++.+++++|+.+++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 134 DFNGSEIERLLTEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555544433
No 198
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=71.30 E-value=1.5e+02 Score=31.62 Aligned_cols=101 Identities=13% Similarity=0.164 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEEL 694 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEEL 694 (753)
..|.+-+.....--.++.+|.-...+|+.+..++..+|+.-+..+..+...=..+..+-......+...+.++..-.+|-
T Consensus 26 ~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea 105 (246)
T PF00769_consen 26 EALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEA 105 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555667777777778888888888888887777777777666666666666666777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004449 695 VTEKRKVVQLLQELDQAKALQ 715 (753)
Q Consensus 695 a~EK~Kl~~l~qel~qak~~q 715 (753)
..-+.++...+..+..+++-.
T Consensus 106 ~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 106 EELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666666543
No 199
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=71.20 E-value=33 Score=39.55 Aligned_cols=35 Identities=11% Similarity=0.200 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHH
Q 004449 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQ 650 (753)
Q Consensus 616 rLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~ 650 (753)
++.+++..|..+..++.++++....++.+.+.|..
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 106 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLED 106 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555533
No 200
>PRK11519 tyrosine kinase; Provisional
Probab=71.18 E-value=2.5e+02 Score=34.14 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=19.5
Q ss_pred HhhHHHHHHHHHHHHHhhhcHHHHHHHHHhH
Q 004449 566 EWTEWANQKVMQAARRLSKDKAELKTLRQEK 596 (753)
Q Consensus 566 ewtdWAnqKvMQAarRL~kdk~ELksLR~Ek 596 (753)
.=.+|-++++-+.-.+|..--..|...|++.
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3446777777776666666666666665543
No 201
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=70.90 E-value=2.4e+02 Score=34.54 Aligned_cols=72 Identities=21% Similarity=0.219 Sum_probs=32.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 638 VRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (753)
Q Consensus 638 vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~ 713 (753)
+..|..+...++++...++-..++....|++..+.-...+..+ +.....|.|-. .|+..-.+|+-++.+.|.
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L---~~~~~~l~~~~-~e~~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDL---ESLEENLVEKK-KEKEERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHHHHHHHhhc
Confidence 3444444444555554555555555555555544443332222 22233333333 444444455555554443
No 202
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=70.83 E-value=11 Score=31.78 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHhh--hh--hHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 614 MKKLSEMENALCKAS--GQ--VERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 614 ~KrLsEmEnAL~kas--gQ--lerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
+-||.|||+-|...- -- -.-|...+.+|++||..||+|++-.+
T Consensus 3 ~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 3 LLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357888888886543 11 23466778899999999999998654
No 203
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=70.78 E-value=32 Score=31.07 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=36.2
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHH-HHHHhhHHHHHHHHHH
Q 004449 604 KEKQILEENTMKKLSEMENALCKASGQVERANSAVR-RLEVENTALRQEMEAA 655 (753)
Q Consensus 604 KeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vr-rLE~EnA~lR~EmEAa 655 (753)
..+..+|-.---.++||+ .|+++=-+||+++..++ ..|.|++.||+|+|+-
T Consensus 25 ~~~~e~e~ki~~Qi~Em~-~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 25 HQKDEYEHKINSQIQEMQ-QIRQKVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444544455667775 47777777777777664 6899999999999874
No 204
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=70.39 E-value=59 Score=32.19 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=55.1
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 589 LKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQE 668 (753)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~E 668 (753)
+..||.+.|.+++- +.+...+|..-++||.+++...++-+...+.||.+.+.+-- -++.++.
T Consensus 21 ~~~l~~~~~~a~~~--------------~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~----~l~~re~ 82 (135)
T TIGR03495 21 LRNARADLERANRV--------------LKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARA----LLAQREQ 82 (135)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 45677777666544 45666778888899999999999999999999998887543 3444555
Q ss_pred HHHHHHHhHHHHHhHH
Q 004449 669 VSKREKKTQMKFQSWE 684 (753)
Q Consensus 669 v~krekk~lkk~qsWE 684 (753)
-.++-+...+.|..|-
T Consensus 83 ~i~rL~~ENe~lR~Wa 98 (135)
T TIGR03495 83 RIERLKRENEDLRRWA 98 (135)
T ss_pred HHHHHHHcCHHHHHHh
Confidence 5555555556666664
No 205
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=70.37 E-value=2e+02 Score=32.74 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 004449 696 TEKRKVVQLLQELDQAKALQEQLEEMSNETA 726 (753)
Q Consensus 696 ~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~ 726 (753)
.-...+.+++.++..++...++++..+..+-
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~ 318 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQKGV 318 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 4445555555555555555555555554443
No 206
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=70.22 E-value=1.1e+02 Score=33.63 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=19.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhH
Q 004449 547 DEIILKLIPRVRELHNQLHEWTE 569 (753)
Q Consensus 547 DEmilkLv~rv~eLq~qlqewtd 569 (753)
|.-+.-||.|++.|+.++..|..
T Consensus 51 ~~ql~ll~~~~k~L~aE~~qwqk 73 (268)
T PF11802_consen 51 DAQLSLLMMRVKCLTAELEQWQK 73 (268)
T ss_pred chhHHHHHHHHHHHHHHHHHHHh
Confidence 34566899999999999999965
No 207
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=69.80 E-value=2.6e+02 Score=33.88 Aligned_cols=112 Identities=19% Similarity=0.217 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHhHHHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKRE----KKTQMKFQSWEKQKALF 690 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~kre----kk~lkk~qsWEkQK~lL 690 (753)
+||.+++..|....-+|+.-+.....|..++.++-..|.-. ..+.+-.++=.|++-|. ...+.++|.-|.| .+.
T Consensus 202 ~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy-~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q-~~~ 279 (617)
T PF15070_consen 202 KKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQY-VAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQ-GKV 279 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHH
Confidence 67778888888888888888888888888887777766644 22456666666666665 2334566654443 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC
Q 004449 691 QEELVTEKRKVVQLLQELDQAKALQEQLEEMSNETALISD 730 (753)
Q Consensus 691 QEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~~~ 730 (753)
+-|+.. ..|.+.++.|+.+.+.-.|+++.+...++-.+
T Consensus 280 ~~E~~~--~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~e 317 (617)
T PF15070_consen 280 QLEMAH--QELQEAQEHLEALSQQNQQLQAQLSLMALPGE 317 (617)
T ss_pred HHHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCC
Confidence 444443 56677788888888888888888877666553
No 208
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=69.78 E-value=43 Score=30.71 Aligned_cols=86 Identities=19% Similarity=0.319 Sum_probs=45.8
Q ss_pred HhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhh--hhH------HHHHHHH
Q 004449 553 LIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTM--KKL------SEMENAL 624 (753)
Q Consensus 553 Lv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~--KrL------sEmEnAL 624 (753)
++.+.+.|+.++ +++++.-+.|-.++.| .+...+|-..|++++. +.+ ...+-|+
T Consensus 4 ~~~~~q~l~~~~--------~~l~~~~~~l~~~~~E----------~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~ 65 (105)
T cd00632 4 QLAQLQQLQQQL--------QAYIVQRQKVEAQLNE----------NKKALEELEKLADDAEVYKLVGNVLVKQEKEEAR 65 (105)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHH----------HHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHH
Confidence 566677777664 3444444444444444 4444555555544432 111 1234444
Q ss_pred HHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 625 CKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 625 ~kasgQlerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
..-..+++.....+.+|+.+...+..+|...|
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666666666666666544
No 209
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=69.68 E-value=85 Score=33.32 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=17.0
Q ss_pred HHHHHHhhhhhHhhhhHHHHHH---HhhHHHHHHHHHHHHH
Q 004449 621 ENALCKASGQVERANSAVRRLE---VENTALRQEMEAAKLR 658 (753)
Q Consensus 621 EnAL~kasgQlerAns~vrrLE---~EnA~lR~EmEAaKL~ 658 (753)
+..+..+..+++.|+....|.+ .+.+.-+.|++.++..
T Consensus 114 ~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~~ 154 (334)
T TIGR00998 114 KIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHARKA 154 (334)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHHH
Confidence 3334444444444444444333 2344445566665544
No 210
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=69.35 E-value=2e+02 Score=32.28 Aligned_cols=107 Identities=32% Similarity=0.438 Sum_probs=62.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhcH----HHHHHHHHhHHHHHHHHHHHhhhhhhhh-hhHHHHHHHHHHhhhhhH-
Q 004449 559 ELHNQLHEWTEWANQKVMQAARRLSKDK----AELKTLRQEKEEVERLKKEKQILEENTM-KKLSEMENALCKASGQVE- 632 (753)
Q Consensus 559 eLq~qlqewtdWAnqKvMQAarRL~kdk----~ELksLR~EkEE~erlkKeKq~lEe~T~-KrLsEmEnAL~kasgQle- 632 (753)
+|+++|..-.+|---|.|....+|-+++ .+|.-||.||-+.|.--.--|.+=.|+. ||.+.|+..-+.-..+|+
T Consensus 124 ~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 124 ELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5666666667776667777777776443 4566777777666554333333333433 677777766655555554
Q ss_pred ----------------------hhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004449 633 ----------------------RANSAVRRLEVENTALRQEMEAAKLRAAESAAS 665 (753)
Q Consensus 633 ----------------------rAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~s 665 (753)
+..+-|+.|-.|.+-||++|-++...-++-.+.
T Consensus 204 ~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~ 258 (310)
T PF09755_consen 204 PVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQ 258 (310)
T ss_pred ccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566666666666666655544444443
No 211
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=69.08 E-value=42 Score=33.71 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=39.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (753)
Q Consensus 637 ~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~ 714 (753)
++-.+-.+...+++++++++.++....+...++ -+.....+.+|++.-|.+|.+.+.+++-.|++
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~-------------~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAEKL-------------LKEENKKLSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566677888888887776665554433 22344566777777777777766665544433
No 212
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=69.08 E-value=1.3e+02 Score=31.68 Aligned_cols=136 Identities=21% Similarity=0.320 Sum_probs=82.3
Q ss_pred HhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHH-----HHHHH
Q 004449 581 RLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQ-----EMEAA 655 (753)
Q Consensus 581 RL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~-----EmEAa 655 (753)
-++.-..|+.+||-..-++ ..--+++-.++.++..+++..+-.++.-..-++|.-.|...||. |-|.+
T Consensus 25 E~~~K~~Eiv~Lr~ql~e~-------~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~ 97 (202)
T PF06818_consen 25 EVNQKDSEIVSLRAQLREL-------RAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELA 97 (202)
T ss_pred HHHHHHhHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHH
Confidence 4444456677777644333 22345566777888888888888888888888888888877776 55667
Q ss_pred HHHHHHHHH-----HHHHHHH------HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q 004449 656 KLRAAESAA-----SCQEVSK------REKKTQMKFQSWEKQKALFQEELVTEKRKVVQL-----------LQELDQAKA 713 (753)
Q Consensus 656 KL~A~ES~~-----sc~Ev~k------rekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l-----------~qel~qak~ 713 (753)
.|+...+.. .|+-+.. +....-..+.....|---|+.||..|+++.-+- ++|.+++=.
T Consensus 98 ~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~ 177 (202)
T PF06818_consen 98 ELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIR 177 (202)
T ss_pred HHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666654 1222211 111112234445566677777887777766533 445555556
Q ss_pred HHHHHHHhhh
Q 004449 714 LQEQLEEMSN 723 (753)
Q Consensus 714 ~q~q~E~~~~ 723 (753)
+|+|+..-..
T Consensus 178 YQkQLQ~nYv 187 (202)
T PF06818_consen 178 YQKQLQQNYV 187 (202)
T ss_pred HHHHHHHHHH
Confidence 6777665433
No 213
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=69.06 E-value=44 Score=39.04 Aligned_cols=75 Identities=21% Similarity=0.229 Sum_probs=37.5
Q ss_pred hhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 629 GQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQEL 708 (753)
Q Consensus 629 gQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel 708 (753)
+||..-+..++.|+.+|..|++|-|.-+-+..--....+.++..++. ...+|...|++|+..-+..|.+|+++|
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~------~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQ------ELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555556666655553333333333334444433332 233455666666666666666666665
Q ss_pred H
Q 004449 709 D 709 (753)
Q Consensus 709 ~ 709 (753)
+
T Consensus 140 ~ 140 (472)
T TIGR03752 140 A 140 (472)
T ss_pred h
Confidence 4
No 214
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=68.49 E-value=1.5e+02 Score=30.72 Aligned_cols=120 Identities=23% Similarity=0.260 Sum_probs=79.9
Q ss_pred chhHHHHHHhHHHHHHHHHHHHhhHHH--HHHHHHHHHHhhhc-HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 004449 545 KRDEIILKLIPRVRELHNQLHEWTEWA--NQKVMQAARRLSKD-KAELKTLRQEKEEVERLKKEKQILEENTMKKLSEME 621 (753)
Q Consensus 545 ~KDEmilkLv~rv~eLq~qlqewtdWA--nqKvMQAarRL~kd-k~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmE 621 (753)
.|..|+-.|-.+|+|.+.-|++-+-=- -|..+++|++..++ ..++++|+.=.+.++.- -++.........
T Consensus 64 GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~n-------l~~a~~~a~~AQ 136 (188)
T PF05335_consen 64 GKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQAN-------LANAEQVAEGAQ 136 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 477788888888888888887765432 25666666665533 23334443333333222 233444555566
Q ss_pred HHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 622 NALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSK 671 (753)
Q Consensus 622 nAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~k 671 (753)
..|.-...=|+.|...|..|.-...+-|.+.|..|-.|...+..=+|+..
T Consensus 137 ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA~~AA~eAkq 186 (188)
T PF05335_consen 137 QELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKAACAAQEAKQ 186 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666667788999999999999999999999999888877766666543
No 215
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=68.28 E-value=1.5e+02 Score=33.12 Aligned_cols=52 Identities=27% Similarity=0.278 Sum_probs=28.4
Q ss_pred HHHHHHhHHHHHHHHHHHHhh-HHHH----------------HHHHHHHHHhhhcHHHHHHHHHhHHHH
Q 004449 548 EIILKLIPRVRELHNQLHEWT-EWAN----------------QKVMQAARRLSKDKAELKTLRQEKEEV 599 (753)
Q Consensus 548 EmilkLv~rv~eLq~qlqewt-dWAn----------------qKvMQAarRL~kdk~ELksLR~EkEE~ 599 (753)
-|+=.|-.|-+.|+....+|. .|+. +-+.++-.+--+-..|++.||+...|+
T Consensus 30 lMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 30 LMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEA 98 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555556667777777666 4552 223333344444455666666665554
No 216
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=68.27 E-value=59 Score=36.77 Aligned_cols=42 Identities=24% Similarity=0.276 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccCCccccCcchhhhcccccCC
Q 004449 702 VQLLQELDQAKALQEQLEEMSNETALISDPWRYDYNACWFQQSALSSP 749 (753)
Q Consensus 702 ~~l~qel~qak~~q~q~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (753)
..+.+++.+++...+++|. + .|.+|| ||-+.||.+=.+-.-|
T Consensus 95 ~~a~~e~~~l~~~l~~le~---~-~ll~~~--~D~~~~~leI~aG~GG 136 (364)
T TIGR00020 95 NELDAELKALEKKLAELEL---R-TMLSGE--YDANNAYLTIQAGAGG 136 (364)
T ss_pred HHHHHHHHHHHHHHHHHHH---H-hccCCC--CccCCeeEEEECCCCc
Confidence 4555666666666556653 2 456787 6899999987665544
No 217
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=67.97 E-value=3.5e+02 Score=34.63 Aligned_cols=100 Identities=26% Similarity=0.398 Sum_probs=61.7
Q ss_pred CCCCchhHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHH
Q 004449 541 VPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEM 620 (753)
Q Consensus 541 VP~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEm 620 (753)
+|--.|.|+= |=+||+||...|+- +-.|=..|++-|+.|-+=|=+.+++.. +----|....++
T Consensus 219 l~saskte~e--Lr~QvrdLtEkLet-----------lR~kR~EDk~Kl~ElekmkiqleqlqE----fkSkim~qqa~L 281 (1243)
T KOG0971|consen 219 LPSASKTEEE--LRAQVRDLTEKLET-----------LRLKRAEDKAKLKELEKMKIQLEQLQE----FKSKIMEQQADL 281 (1243)
T ss_pred CCccccchHH--HHHHHHHHHHHHHH-----------HHhhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4444666664 55666666554432 112334566666666555555554411 111246778888
Q ss_pred HHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHH
Q 004449 621 ENALCKASGQVERANSAVRRLEVENTALRQEMEAAKL 657 (753)
Q Consensus 621 EnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL 657 (753)
+..|..+....+.|-.+--++-.|.+.+.--||-+-|
T Consensus 282 qrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTl 318 (1243)
T KOG0971|consen 282 QRELKRARKEAKEAQEAKERYKEEMADTADAIEMATL 318 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888887777777666665544
No 218
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=67.84 E-value=2e+02 Score=31.79 Aligned_cols=113 Identities=25% Similarity=0.307 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH-------hhhhhHhhhhHHHHHHHhhHHHHH------------HHHHHH
Q 004449 596 KEEVERLKKEKQILEENTMKKLSEMENALCK-------ASGQVERANSAVRRLEVENTALRQ------------EMEAAK 656 (753)
Q Consensus 596 kEE~erlkKeKq~lEe~T~KrLsEmEnAL~k-------asgQlerAns~vrrLE~EnA~lR~------------EmEAaK 656 (753)
.++..|||++- +.|.+||.|..|.|.- .+|-.=-|. -|-|-.||.+|-. |+--.|
T Consensus 176 nl~F~rlK~el----e~tk~Klee~QnelsAwkFTPdS~tGK~LMAK--CR~L~qENeElG~q~s~Gria~Le~eLAmQK 249 (330)
T KOG2991|consen 176 NLFFLRLKGEL----EQTKDKLEEAQNELSAWKFTPDSKTGKMLMAK--CRTLQQENEELGHQASEGRIAELEIELAMQK 249 (330)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHhhhheeeecCCCcchHHHHHH--HHHHHHHHHHHHhhhhcccHHHHHHHHHHHH
Confidence 34566676653 3578889999988853 233322232 3444444444433 333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 657 LRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (753)
Q Consensus 657 L~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~ 714 (753)
-.-.|--.|.-|+-+--...-.....+..--..||++|.+-+..|-+|.+.++|..++
T Consensus 250 s~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqa 307 (330)
T KOG2991|consen 250 SQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQA 307 (330)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222222223334555667788999988888888888888877765
No 219
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=67.60 E-value=2.2e+02 Score=33.68 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 004449 698 KRKVVQLLQELDQ 710 (753)
Q Consensus 698 K~Kl~~l~qel~q 710 (753)
..|..+.+++...
T Consensus 320 e~K~~Eaq~er~~ 332 (489)
T PF05262_consen 320 EKKEEEAQQERKE 332 (489)
T ss_pred hHHHHHHHHHHHH
Confidence 3444455555444
No 220
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=67.34 E-value=2.6e+02 Score=35.92 Aligned_cols=109 Identities=26% Similarity=0.307 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhh-----hhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhh
Q 004449 571 ANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEEN-----TMKKLSEMENALCKASGQVERANSAVRRLEVEN 645 (753)
Q Consensus 571 AnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~-----T~KrLsEmEnAL~kasgQlerAns~vrrLE~En 645 (753)
.|||+|-.| |.||. -+|+||||.+--+--|- +-+|+.++|.......-|++ +||.|.
T Consensus 396 vNQkl~K~~--llKd~---------~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ie-------ele~el 457 (1041)
T KOG0243|consen 396 VNQKLMKKT--LLKDL---------YEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIE-------ELEEEL 457 (1041)
T ss_pred cchHHHHHH--HHHHH---------HHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 478888654 34443 34566666554433332 23444444444444433332 333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q 004449 646 TALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTE 697 (753)
Q Consensus 646 A~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~E 697 (753)
..++.+.+--.=...==...|.++.++..++-++|+.-.++-.-+++|+..-
T Consensus 458 ~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~ 509 (1041)
T KOG0243|consen 458 ENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQA 509 (1041)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333332222222223444555555555555555555444444444433
No 221
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=67.31 E-value=1.9e+02 Score=37.21 Aligned_cols=107 Identities=21% Similarity=0.295 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKT------------------ 676 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~------------------ 676 (753)
=+|-..|.-++++...|.|-|+.+.+++.....--+|.++-| .|...-..++.+.+++-
T Consensus 220 ~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k---~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke 296 (1141)
T KOG0018|consen 220 WELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRK---KERGKIRRELQKVDKKISEKEEKLAERPELIKVKE 296 (1141)
T ss_pred HHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcch
Confidence 456677777788888777777777766654433333333333 22222222333222221
Q ss_pred -----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 677 -----QMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 677 -----lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
-+||..-++--.-.+.+..+.+.-|.+++.++.-.....+..|+.+.+
T Consensus 297 ~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~ 349 (1141)
T KOG0018|consen 297 NASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEE 349 (1141)
T ss_pred hhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133444444444445555555555555555555555444444444433
No 222
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=67.27 E-value=1.5e+02 Score=30.02 Aligned_cols=158 Identities=22% Similarity=0.221 Sum_probs=83.0
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 004449 546 RDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALC 625 (753)
Q Consensus 546 KDEmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~ 625 (753)
-|+-..+.-..+..|+.+|+. -.=+.+++...-+.|+.+..||-.-=..-- ..|++ ..|.
T Consensus 22 ~D~~F~~~~~~~~~le~~Lk~-l~~~~~~l~~~~~~l~~~~~e~~~~~~~la----------~~E~~---------~~l~ 81 (236)
T PF09325_consen 22 PDEWFEEIKDYVDKLEEQLKK-LYKSLERLVKRRQELASALAEFGSSFSQLA----------KSEEE---------KSLS 81 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------cccCC---------chhH
Confidence 366677777888888888887 455666777777777777766643211111 11222 1133
Q ss_pred HhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH-------HH
Q 004449 626 KASGQVERANSAVRRLEVENTALRQEMEAAKLR-AAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELV-------TE 697 (753)
Q Consensus 626 kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~-A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa-------~E 697 (753)
++-.++-.+...+..+..+.+.--...=..-|+ -.-...+..+++.+-.+.+..++..+.+-.+.++++. ..
T Consensus 82 ~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~ 161 (236)
T PF09325_consen 82 EALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNR 161 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 333333333333333322221111110011111 2344556666777766666666666666666665552 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004449 698 KRKVVQLLQELDQAKALQEQLEEMSN 723 (753)
Q Consensus 698 K~Kl~~l~qel~qak~~q~q~E~~~~ 723 (753)
..|+.++..++..++...++++.++.
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~ 187 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFE 187 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777776666665554
No 223
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.04 E-value=2.6e+02 Score=32.75 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=24.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhH
Q 004449 559 ELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEK 596 (753)
Q Consensus 559 eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~Ek 596 (753)
.+-+++.+--+||++|--|-+-+.-|++..+..=+.+.
T Consensus 39 ~~l~~~ee~e~~~~~~~A~~~~~~kkel~~~~~q~~~~ 76 (438)
T COG4487 39 RILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQ 76 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999987776665555555444444333
No 224
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=67.02 E-value=83 Score=33.78 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 691 QEELVTEKRKVVQLLQELDQAKAL 714 (753)
Q Consensus 691 QEELa~EK~Kl~~l~qel~qak~~ 714 (753)
++++...+..+..++.++++++..
T Consensus 177 ~~~~~~~~~~l~~~~~~l~~a~~~ 200 (331)
T PRK03598 177 PQDIAQAKASLAQAQAALAQAELN 200 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544433
No 225
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=66.95 E-value=2.2e+02 Score=31.87 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=13.8
Q ss_pred HHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhc
Q 004449 552 KLIPRVRELHNQLHEWTEWANQKVMQAARRLSKD 585 (753)
Q Consensus 552 kLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kd 585 (753)
+|-.|+.++. ++.|+. ++||+.++-..|...
T Consensus 5 ~~~~q~a~~~--lk~~~~-~~qk~l~~~~~l~~~ 35 (332)
T TIGR01541 5 LLTQQIADRK--LKKLNT-ADEKSLQSRSDEIIA 35 (332)
T ss_pred HHHHHHHHHH--HhhhhH-HHHHHHHHHHHHHHH
Confidence 3444444444 344443 444444444444433
No 226
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.63 E-value=3.5e+02 Score=34.12 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=17.5
Q ss_pred hhcCCchH-HHHHHHhhccccccCCcchhHHHHHHHHhhcc
Q 004449 149 VACGYMEE-VATKAVLRSGLCYGSKDTVSNIVDNTLAFLRS 188 (753)
Q Consensus 149 P~~g~~e~-~~~rALL~AGhCYGplDPVSNII~NTIwyl~a 188 (753)
|..||-.. .+...++.+|+= -.|+.-||.+.+
T Consensus 27 p~~gfitg~qArnfflqS~LP--------~~VLaqIWALsD 59 (1118)
T KOG1029|consen 27 PGQGFITGDQARNFFLQSGLP--------TPVLAQIWALSD 59 (1118)
T ss_pred CCCCccchHhhhhhHHhcCCC--------hHHHHHHHHhhh
Confidence 44444332 244455666651 246777888865
No 227
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=66.46 E-value=1.3e+02 Score=35.24 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=21.5
Q ss_pred HHHhHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 004449 673 EKKTQMKFQSWEKQKALFQEELVTE----KRKVVQLLQELD 709 (753)
Q Consensus 673 ekk~lkk~qsWEkQK~lLQEELa~E----K~Kl~~l~qel~ 709 (753)
.++-.|..+.|-++-.+++|-+++. -.+|..||++|-
T Consensus 405 n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 405 NKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788876666655544333 345566665554
No 228
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=66.23 E-value=1.8e+02 Score=35.28 Aligned_cols=20 Identities=10% Similarity=0.288 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004449 685 KQKALFQEELVTEKRKVVQL 704 (753)
Q Consensus 685 kQK~lLQEELa~EK~Kl~~l 704 (753)
.|.+-|+.+++..+.++.++
T Consensus 346 ~~~~~L~~~~~~l~~~~~~~ 365 (726)
T PRK09841 346 EKRQTLEQERKRLNKRVSAM 365 (726)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34455555555555554443
No 229
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=65.66 E-value=3.3e+02 Score=33.54 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 690 FQEELVTEKRKVVQLLQELDQAKALQE 716 (753)
Q Consensus 690 LQEELa~EK~Kl~~l~qel~qak~~q~ 716 (753)
+.+||..-+.+|..++..++++|...+
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666665544
No 230
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=65.23 E-value=71 Score=34.45 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------
Q 004449 663 AASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEM--------------------- 721 (753)
Q Consensus 663 ~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~--------------------- 721 (753)
..+.+++.++-..+-.||+---++|.-|-+|+..-..++-.+|++|...+.-.-++|.|
T Consensus 127 v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 127 VPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 34455555555555555555555555555555555555555555555444433333322
Q ss_pred --hhhcccccCCccccC
Q 004449 722 --SNETALISDPWRYDY 736 (753)
Q Consensus 722 --~~~~~~~~~~~~~~~ 736 (753)
+-|+.+|+|-|+-.+
T Consensus 207 ~El~e~~~i~dl~~et~ 223 (290)
T COG4026 207 VELPEEELISDLVKETL 223 (290)
T ss_pred ccchHHHHHHHHHHHHh
Confidence 345677888887433
No 231
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=64.96 E-value=2.5e+02 Score=31.92 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHH
Q 004449 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (753)
Q Consensus 614 ~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAa 655 (753)
+-+|.++|..+.......---|-.|+.|..+++.+++++.+.
T Consensus 253 ~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 253 DGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEE 294 (498)
T ss_pred HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhh
Confidence 345777777777666666666777888888888888876553
No 232
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=64.71 E-value=2.4e+02 Score=31.60 Aligned_cols=46 Identities=22% Similarity=0.262 Sum_probs=39.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004449 677 QMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMS 722 (753)
Q Consensus 677 lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~ 722 (753)
.++++.++++|.+|+.|+..-|..|..|...|....+.-+-++..+
T Consensus 107 ~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 107 EEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3457788999999999999999999999999998888776666654
No 233
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=64.44 E-value=43 Score=37.74 Aligned_cols=46 Identities=24% Similarity=0.164 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccCCccccCcchhhhcccccCC
Q 004449 702 VQLLQELDQAKALQEQLEEMSNETALISDPWRYDYNACWFQQSALSSP 749 (753)
Q Consensus 702 ~~l~qel~qak~~q~q~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (753)
..+.+++......-+++|..+....|.+|| ||.+.||.+=++-.-|
T Consensus 78 ~~~~~e~~~l~~~l~~~e~~l~~~ll~~~~--~D~~~~~leI~aG~GG 123 (359)
T PRK00591 78 EMAKEELKELEERLEELEEELKILLLPKDP--NDDKNVILEIRAGTGG 123 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CccCCeEEEEECCCCh
Confidence 344455555555555555554444566777 8999999987765544
No 234
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=64.22 E-value=1.8e+02 Score=30.07 Aligned_cols=99 Identities=8% Similarity=0.136 Sum_probs=48.5
Q ss_pred HHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHhHHHHHHHHHHHHHH
Q 004449 622 NALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQ-----MKFQSWEKQKALFQEELVT 696 (753)
Q Consensus 622 nAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~l-----kk~qsWEkQK~lLQEELa~ 696 (753)
-.|+....+|..+..++-+.-+..-.+.++.+...-.+.+-...-..++++....| .+-+.-+.+-.-|+.++..
T Consensus 31 q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~ 110 (219)
T TIGR02977 31 LIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAA 110 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334555555555555555555555555555555555555555555544333 2233334444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 697 EKRKVVQLLQELDQAKALQEQLEE 720 (753)
Q Consensus 697 EK~Kl~~l~qel~qak~~q~q~E~ 720 (753)
.+.-+.+|...|.+.+....++..
T Consensus 111 ~~~~v~~l~~~l~~L~~ki~~~k~ 134 (219)
T TIGR02977 111 VEETLAKLQEDIAKLQAKLAEARA 134 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544444444433
No 235
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=63.93 E-value=1.6e+02 Score=34.67 Aligned_cols=8 Identities=13% Similarity=-0.014 Sum_probs=3.3
Q ss_pred HHHHHHhh
Q 004449 214 LVCVLREV 221 (753)
Q Consensus 214 LVafLrs~ 221 (753)
.+.|-.+|
T Consensus 128 a~~Fy~ef 135 (493)
T KOG0804|consen 128 ADTFYEEF 135 (493)
T ss_pred HHHHHHHc
Confidence 34444443
No 236
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=63.79 E-value=3.4e+02 Score=33.06 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSA----VRRLEVENTALRQEMEAAKLRAAESAASCQEV 669 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~----vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev 669 (753)
|+++.|+.|+..+..|+.-..+. |--.-.|...+-.|.|-|+-++..-.+-|-.+
T Consensus 203 ~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L 261 (629)
T KOG0963|consen 203 KKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQL 261 (629)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777666 33444455555666666666666655555443
No 237
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=63.79 E-value=24 Score=41.07 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=15.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHH
Q 004449 637 AVRRLEVENTALRQEMEAAKL 657 (753)
Q Consensus 637 ~vrrLE~EnA~lR~EmEAaKL 657 (753)
.+.+||.||+.|+.+|||++-
T Consensus 105 KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 105 RIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 344888888888888877653
No 238
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=63.37 E-value=1.7e+02 Score=30.64 Aligned_cols=114 Identities=24% Similarity=0.287 Sum_probs=72.8
Q ss_pred cccccCCCCchhHHHHHHhHHHHHHHHHHHHhhHHH-HHHHHHHH--HHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 004449 536 SLEHLVPQDKRDEIILKLIPRVRELHNQLHEWTEWA-NQKVMQAA--RRLSKDKAELKTLRQEKEEVERLKKEKQILEEN 612 (753)
Q Consensus 536 ~l~~~VP~D~KDEmilkLv~rv~eLq~qlqewtdWA-nqKvMQAa--rRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~ 612 (753)
++..|.|+.....+-+.|.+...+ =..++++. +++||.|| ||-..|..-+-.||.++--.+.|-+ +=.+.|.
T Consensus 37 ~l~p~F~~~~~rdiY~sL~~~~~~----~~~~k~~k~~e~VLKAALLrRavedIrR~~klre~k~~l~~L~q-~GsIGDd 111 (190)
T PF09802_consen 37 SLEPWFPEHLQRDIYLSLLHMEDP----PASEKKPKVPEKVLKAALLRRAVEDIRRIIKLREDKPALNKLYQ-NGSIGDD 111 (190)
T ss_pred cCCCCCCchhHHHHHHHHHhccCC----ccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-CCCccHH
Confidence 355899988777777777665432 14556664 89999987 7777777777777777776666632 2344566
Q ss_pred hhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 004449 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKL-RAAESAASCQEVSK 671 (753)
Q Consensus 613 T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL-~A~ES~~sc~Ev~k 671 (753)
..+|+.. +...+|.|.-++..|-++=+= ++.-=..+|+|+.-
T Consensus 112 ~wqrf~~-----------------aeKe~E~El~eVv~EAn~l~pgWgq~IF~~A~Ei~~ 154 (190)
T PF09802_consen 112 LWQRFQR-----------------AEKEMEEELKEVVQEANALKPGWGQTIFQSANEICF 154 (190)
T ss_pred HHHHHHH-----------------HHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHH
Confidence 6666543 455678888888887766432 23334455555443
No 239
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=63.37 E-value=63 Score=35.26 Aligned_cols=79 Identities=24% Similarity=0.250 Sum_probs=47.3
Q ss_pred HHHHhhhhhHh---hhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH
Q 004449 623 ALCKASGQVER---ANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKR 699 (753)
Q Consensus 623 AL~kasgQler---Ans~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~ 699 (753)
+..+|+.=++| |.+.|++||+-|..|-+-+|+.|=-= .++..+| +-+.-||-++.+
T Consensus 208 ~V~kAnsVldRmk~aEaqvneLEvsN~DLsaKLe~gknaY-------~~~ieke--------------~q~raeL~acEE 266 (311)
T PF04642_consen 208 AVEKANSVLDRMKEAEAQVNELEVSNIDLSAKLEPGKNAY-------LAAIEKE--------------NQARAELNACEE 266 (311)
T ss_pred HHHHHHHHHHHHHHHHhhhhheecccHHHHHhhcCCcchH-------HHHHhhH--------------HHHHHHHHHHHH
Confidence 35566655555 67789999999999988877766432 2222222 334566777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 004449 700 KVVQLLQELDQAKALQEQLEEMS 722 (753)
Q Consensus 700 Kl~~l~qel~qak~~q~q~E~~~ 722 (753)
||..+.++-+..-..+.+-|.+-
T Consensus 267 kl~kmeE~Qa~~l~~aR~~errk 289 (311)
T PF04642_consen 267 KLKKMEEEQAEMLRAARTEERRK 289 (311)
T ss_pred HHhcccHHHHHHHHHHHHHHHHH
Confidence 77666555444444444444433
No 240
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=63.32 E-value=76 Score=34.09 Aligned_cols=52 Identities=19% Similarity=0.146 Sum_probs=30.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCc
Q 004449 678 MKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNETALISDPW 732 (753)
Q Consensus 678 kk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~~~~~ 732 (753)
.+++.++.+...++..+. ...+..++.++.+++..-++.+..+. ...|--|+
T Consensus 159 ~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~l~~a~~~l~-~~~I~AP~ 210 (331)
T PRK03598 159 ATLKSAQDKLSQYREGNR--PQDIAQAKASLAQAQAALAQAELNLQ-DTELIAPS 210 (331)
T ss_pred HHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHh-cCEEECCC
Confidence 345555555555544432 34566777777777777777777774 34454454
No 241
>COG5283 Phage-related tail protein [Function unknown]
Probab=63.22 E-value=4.5e+02 Score=34.37 Aligned_cols=39 Identities=28% Similarity=0.401 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHhhhhhHhh-------hhHHHHHHHhhHHHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERA-------NSAVRRLEVENTALRQEME 653 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerA-------ns~vrrLE~EnA~lR~EmE 653 (753)
+++...|+.++++++|+++| ...+++++.+++.+-+=|-
T Consensus 99 ~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~ma 144 (1213)
T COG5283 99 AQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMA 144 (1213)
T ss_pred HHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 56788999999999999988 5677888888888777553
No 242
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=62.65 E-value=3.1e+02 Score=32.11 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=20.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 680 FQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (753)
Q Consensus 680 ~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak 712 (753)
+-...-++..+|||+..-...|.++.-|+.+.+
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e 308 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLE 308 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555677777777776666655555554443
No 243
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=62.64 E-value=2.1e+02 Score=30.72 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=8.6
Q ss_pred HhHHHHHhHHHHHHHH
Q 004449 675 KTQMKFQSWEKQKALF 690 (753)
Q Consensus 675 k~lkk~qsWEkQK~lL 690 (753)
.+..+||..|.+++.+
T Consensus 193 ~~~~~~Q~~Ee~Ri~~ 208 (269)
T cd07673 193 ETAQKFQDIEETHLIR 208 (269)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445566666655543
No 244
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.35 E-value=57 Score=32.18 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=34.5
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHH
Q 004449 610 EENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKL 657 (753)
Q Consensus 610 Ee~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL 657 (753)
++-+..-|.+|+..|.....|+..-...+..|+.|.+.|+.++-...|
T Consensus 67 ~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el 114 (169)
T PF07106_consen 67 EVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEEL 114 (169)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 444666778888888888888887777788887777777766644433
No 245
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=62.21 E-value=30 Score=38.07 Aligned_cols=43 Identities=33% Similarity=0.379 Sum_probs=28.1
Q ss_pred hhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHH
Q 004449 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (753)
Q Consensus 613 T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAa 655 (753)
.+.+|.++|..|..+..+|+.....+.+++.+.+.|+.+.+.+
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~ 261 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEA 261 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666667777777777766666544
No 246
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=62.10 E-value=27 Score=29.51 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=46.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCC
Q 004449 676 TQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNETALISDP 731 (753)
Q Consensus 676 ~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~~~~ 731 (753)
...+......|...|+.+|+..+.+..+|++++++.+.-.+-+|..-|+..-..-|
T Consensus 15 ~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~~ 70 (80)
T PF04977_consen 15 GYSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVKP 70 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcCC
Confidence 34567788899999999999999999999999999977888888888866554433
No 247
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=61.68 E-value=2.4e+02 Score=31.99 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004449 618 SEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAAS 665 (753)
Q Consensus 618 sEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~s 665 (753)
..++..+..-+.++--.+..+..++.+..++++.+.+.=.+-..+..+
T Consensus 295 ~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~ 342 (458)
T COG3206 295 AQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPN 342 (458)
T ss_pred HHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 334444445555555566666666666666666665544444333333
No 248
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=61.33 E-value=1.7e+02 Score=36.07 Aligned_cols=101 Identities=21% Similarity=0.255 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhcHHHHHHHHHh----HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHH
Q 004449 574 KVMQAARRLSKDKAELKTLRQE----KEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALR 649 (753)
Q Consensus 574 KvMQAarRL~kdk~ELksLR~E----kEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR 649 (753)
-+...|+|++=+...+..=+.- ..+.+++ -..||+. ..++|.....+....+.+...-++||.+...++
T Consensus 489 ~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~l---i~~l~~~----~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 561 (782)
T PRK00409 489 NAFEIAKRLGLPENIIEEAKKLIGEDKEKLNEL---IASLEEL----ERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ 561 (782)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999888777654443 2233332 1111111 112333444444444444455566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHH
Q 004449 650 QEMEAAKLRAAESAASCQEVSKRE-KKTQMKFQ 681 (753)
Q Consensus 650 ~EmEAaKL~A~ES~~sc~Ev~kre-kk~lkk~q 681 (753)
++.+.....|.+-+....+-.+++ ++.+++++
T Consensus 562 ~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 562 EEEDKLLEEAEKEAQQAIKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665555555544 45555555
No 249
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=61.20 E-value=3.1e+02 Score=33.94 Aligned_cols=41 Identities=15% Similarity=-0.142 Sum_probs=21.8
Q ss_pred hhhHHHHHHHhHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhc
Q 004449 203 LPQLEKYILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAM 247 (753)
Q Consensus 203 L~rle~RSL~GLVafLrs~fP~LS~~DAmwyLLlADaDLl~A~am 247 (753)
..+.+.+.|..|...+..+.+.|-. +.. .++.+|+..|.+.
T Consensus 238 ~~~e~~~il~~L~~~i~~~~~~l~~--~~~--~l~~lD~l~a~a~ 278 (771)
T TIGR01069 238 EECEIEKILRTLSEKVQEYLLELKF--LFK--EFDFLDSLQARAR 278 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHH
Confidence 3455667777777777766553321 111 2345566555443
No 250
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=61.01 E-value=78 Score=32.10 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=4.9
Q ss_pred hhHHHHHHHHHHH
Q 004449 644 ENTALRQEMEAAK 656 (753)
Q Consensus 644 EnA~lR~EmEAaK 656 (753)
-|..++-|+.+-.
T Consensus 145 ~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 145 ANEILQDELQALQ 157 (194)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 251
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=60.99 E-value=1.6e+02 Score=28.27 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=25.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004449 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQL 704 (753)
Q Consensus 637 ~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l 704 (753)
.+..++.+...++.+++.-.-.+.+.-..+..=+-+=-...+.+.....|-..++.+|..-+..+...
T Consensus 18 ~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a 85 (132)
T PF07926_consen 18 QEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESA 85 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444433333333333322222222334444444444444443333333333333
No 252
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=60.73 E-value=99 Score=27.44 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=52.5
Q ss_pred HHhhhhhHhhhhHHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004449 625 CKASGQVERANSAVRRLEVENTALRQEME--AAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVV 702 (753)
Q Consensus 625 ~kasgQlerAns~vrrLE~EnA~lR~EmE--AaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~ 702 (753)
.--..-|++.+..|+.|.....+|...|+ ..+|+....+....+.....+ ...|+..-.+.-..+++=+..-|.++.
T Consensus 10 ~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~ 88 (92)
T PF14712_consen 10 SLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRAD 88 (92)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456688888888888888888877664 566666666556565665666 777776666665555555555555555
Q ss_pred HHH
Q 004449 703 QLL 705 (753)
Q Consensus 703 ~l~ 705 (753)
.|+
T Consensus 89 ~L~ 91 (92)
T PF14712_consen 89 KLQ 91 (92)
T ss_pred hhc
Confidence 444
No 253
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=60.51 E-value=2.1e+02 Score=30.23 Aligned_cols=108 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q 004449 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (753)
Q Consensus 617 LsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~ 696 (753)
+..+-+.|+.-.+.++.....+..+|.+...|-.+++.-+-++....+..+.+...-..++.+.+.-+..-..++..|..
T Consensus 26 ~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~ 105 (264)
T PF06008_consen 26 IEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQE 105 (264)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHhhhh
Q 004449 697 EKRKVVQLLQ-----ELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 697 EK~Kl~~l~q-----el~qak~~q~q~E~~~~~ 724 (753)
--+++..+-+ .-.......++++.+++|
T Consensus 106 l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~e 138 (264)
T PF06008_consen 106 LIEQVESLNENGDQLPSEDLQRALAEAQRMLEE 138 (264)
T ss_pred HHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHH
No 254
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.84 E-value=3.6e+02 Score=31.96 Aligned_cols=152 Identities=16% Similarity=0.226 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHH------HhhhcH----------HHHHHHHHhHHHHHHHHHHHhhhhhhhhhhH
Q 004449 554 IPRVRELHNQLHEWTEWANQKVMQAAR------RLSKDK----------AELKTLRQEKEEVERLKKEKQILEENTMKKL 617 (753)
Q Consensus 554 v~rv~eLq~qlqewtdWAnqKvMQAar------RL~kdk----------~ELksLR~EkEE~erlkKeKq~lEe~T~KrL 617 (753)
|+++++|+..|+.-++=++.|+|-++. +|.+|- ..-+..||.+++..+. =+.|+
T Consensus 344 ~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Ki-------l~etr--- 413 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKI-------LEETR--- 413 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHH---
Confidence 688999999999888888877765442 233321 1223445555554444 22222
Q ss_pred HHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHhHHHHHHHHHHH
Q 004449 618 SEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAA----SCQEVSKREKKTQMKFQSWEKQKALFQEE 693 (753)
Q Consensus 618 sEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~----sc~Ev~krekk~lkk~qsWEkQK~lLQEE 693 (753)
|+...+..-+++|+|.=+-+-.|=-.-+. -=.+++ .|.++.| .|.|++..-. -.-..-+|-.-|+.+
T Consensus 414 -eLqkq~ns~se~L~Rsfavtdellf~sak---hddhvR-~aykllt~iH~nc~ei~E~i~----~tg~~~revrdlE~q 484 (521)
T KOG1937|consen 414 -ELQKQENSESEALNRSFAVTDELLFMSAK---HDDHVR-LAYKLLTRIHLNCMEILEMIR----ETGALKREVRDLESQ 484 (521)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHhc---cCHHHH-HHHHHHHHHHHHHHHHHHHHH----HcchHHHHHHHHHHH
Confidence 45566667788999988877754321110 001222 5555555 5888776433 234455677788888
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 694 LVTEKRK-----VVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 694 La~EK~K-----l~~l~qel~qak~~q~q~E~~~~~ 724 (753)
|-.|+.| +-+|++.+..+.+..+++-..+|+
T Consensus 485 I~~E~~k~~l~slEkl~~Dyqairqen~~L~~~iR~ 520 (521)
T KOG1937|consen 485 IYVEEQKQYLKSLEKLHQDYQAIRQENDQLFSEIRL 520 (521)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8887665 556777777777777777666654
No 255
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=59.33 E-value=3.1 Score=49.68 Aligned_cols=73 Identities=26% Similarity=0.374 Sum_probs=0.0
Q ss_pred HHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhh---hhhHHHHHHHHHHhhh---hhHhhhhHHHHHHHhhHHHHH
Q 004449 578 AARRLSKDKAELKTLRQEKEEVERLKKEKQILEENT---MKKLSEMENALCKASG---QVERANSAVRRLEVENTALRQ 650 (753)
Q Consensus 578 AarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T---~KrLsEmEnAL~kasg---QlerAns~vrrLE~EnA~lR~ 650 (753)
.|.|+.+--.++...|+-.++.+-||+.-+.||+.+ |.+..++|..++++.+ ||+.-..-+..|+.+....+.
T Consensus 306 ~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~ 384 (713)
T PF05622_consen 306 KADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESR 384 (713)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777788888888899999999999999976 4788888888888554 555544555555554444433
No 256
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=59.31 E-value=51 Score=34.99 Aligned_cols=81 Identities=25% Similarity=0.255 Sum_probs=47.5
Q ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHh
Q 004449 548 EIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKA 627 (753)
Q Consensus 548 EmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~ka 627 (753)
+=|=+|-..++.| .++++-..|-..|..+.+..++.+..+|...+ .+....+++.-+.+.+...|+=.+|+..++..
T Consensus 68 ~~le~Le~el~~l-~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~--~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v 144 (256)
T PF14932_consen 68 EDLEALEEELEAL-QEYKELYEQLRNKLQQLDSSLSQELSELEGKE--EEAQKKLKKAQKELSAECSKLNNELNQLLGEV 144 (256)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556 55555666666777777777777776666655 33344555555556666666655666555544
Q ss_pred hhhh
Q 004449 628 SGQV 631 (753)
Q Consensus 628 sgQl 631 (753)
+.++
T Consensus 145 ~~l~ 148 (256)
T PF14932_consen 145 SKLA 148 (256)
T ss_pred HHHH
Confidence 4433
No 257
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=58.93 E-value=1.1e+02 Score=35.17 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=20.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKRE 673 (753)
Q Consensus 637 ~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~kre 673 (753)
.|.+...||+.|++ .|+.+..+...|||+..|-
T Consensus 293 ~I~~VarENs~Lqr----QKle~e~~l~a~qeakek~ 325 (442)
T PF06637_consen 293 GIERVARENSDLQR----QKLEAEQGLQASQEAKEKA 325 (442)
T ss_pred hHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 44455556655544 4666777777787776653
No 258
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=58.85 E-value=2.2e+02 Score=29.17 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHhhhhcccccCCccccC
Q 004449 698 KRKVVQLLQELDQAKAL--QEQLEEMSNETALISDPWRYDY 736 (753)
Q Consensus 698 K~Kl~~l~qel~qak~~--q~q~E~~~~~~~~~~~~~~~~~ 736 (753)
+.+-..+++..+.++.. .++++++|.|+.- +|--|+|
T Consensus 123 ~~~e~~V~~~~e~sk~FIT~ENLd~~IeeALd--np~~YNf 161 (170)
T PF14943_consen 123 ERKEEEVRQLKEESKNFITRENLDAAIEEALD--NPVDYNF 161 (170)
T ss_pred HHHHHHHHHHHHHhcCcCCHHhHHHHHHHHHc--CCcccce
Confidence 33444555555666665 7889999977643 5876665
No 259
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=58.50 E-value=1.6e+02 Score=35.66 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=64.5
Q ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 633 RANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (753)
Q Consensus 633 rAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak 712 (753)
.+...|-||..|+..++++.+.....-+.-..++..+..+-..+..|-.-.+.....-.++-..-++-..+|+..++++.
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~q 162 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQLQ 162 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446666777777777777776666666666777777777777777777777777777777777778888999999988
Q ss_pred HHHHHHHHh
Q 004449 713 ALQEQLEEM 721 (753)
Q Consensus 713 ~~q~q~E~~ 721 (753)
..+...+..
T Consensus 163 ~~~R~a~~~ 171 (632)
T PF14817_consen 163 DIQRKAKVE 171 (632)
T ss_pred HHHhhccCc
Confidence 887765544
No 260
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=58.29 E-value=3.3 Score=50.77 Aligned_cols=163 Identities=26% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHhh----HHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 004449 550 ILKLIPRVRELHNQLHEWT----EWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALC 625 (753)
Q Consensus 550 ilkLv~rv~eLq~qlqewt----dWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~ 625 (753)
|-++-.+++|||.++.+=. ++. ..+.-+=+|+..-.+||..||.+.+.++|.++- +| -.|.|+.--|.
T Consensus 576 ~kk~q~qlkdlq~~lee~~~~~~~~~-~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~---aE----~el~e~~~~~~ 647 (859)
T PF01576_consen 576 LKKLQAQLKDLQRELEEAQRAREELR-EQLAVSERRLRALQAELEELREALEQAERARKQ---AE----SELDELQERLN 647 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHH
Confidence 4556666666666665522 222 222333355556667777777777777776442 22 22344444444
Q ss_pred HhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q 004449 626 KASGQVERANSAVRRLEVENTALRQEMEAAKLRA----------AESAASCQEVSKREKKTQMKFQSWEKQKALFQEELV 695 (753)
Q Consensus 626 kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A----------~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa 695 (753)
..+.+..-.....|+||.+++.|..++|-+.=.+ ..-++.+++=+..|+- ..+..|+.|.-|...|.
T Consensus 648 ~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~---~~~~le~~k~~LE~q~k 724 (859)
T PF01576_consen 648 ELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQD---HNQHLEKEKKALERQVK 724 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4455555556678888888888888877432111 1112222222222222 23344555666666666
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Q 004449 696 TEKRKVVQLLQELD-QAKALQEQLEEMSN 723 (753)
Q Consensus 696 ~EK~Kl~~l~qel~-qak~~q~q~E~~~~ 723 (753)
.-+.+|..+....- ..+.....+|.+|+
T Consensus 725 eLq~rl~e~E~~~~~~~k~~i~kLE~ri~ 753 (859)
T PF01576_consen 725 ELQARLEEAEQSALKGGKKQIAKLEARIR 753 (859)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHhhhcccccHHHHHhHHHH
Confidence 55555555544221 12334444444444
No 261
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=58.07 E-value=1e+02 Score=34.72 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=18.1
Q ss_pred HHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 621 ENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 621 EnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
+-||.+|..+|.-|...++.|+.+.+..++..+.++
T Consensus 90 ~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~ 125 (352)
T COG1566 90 RAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAE 125 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555554444443
No 262
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=57.40 E-value=58 Score=34.10 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004449 681 QSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSN 723 (753)
Q Consensus 681 qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~ 723 (753)
...+++-..+++||+.-++.|.++.+...++.-.-.++...+.
T Consensus 73 ~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 73 EQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555554444444443
No 263
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=57.33 E-value=2.7e+02 Score=29.81 Aligned_cols=75 Identities=24% Similarity=0.394 Sum_probs=44.4
Q ss_pred HHHHHHHHHh---------hhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH-HhhhhhHhhhhHHHHHH
Q 004449 573 QKVMQAARRL---------SKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALC-KASGQVERANSAVRRLE 642 (753)
Q Consensus 573 qKvMQAarRL---------~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~-kasgQlerAns~vrrLE 642 (753)
.+..+++-|+ ...--||+-.++|.++. + .+....+..+....+. ....|+.+.+..+..|.
T Consensus 78 ~~~~~~~~R~~lAvliaivIs~pl~l~iF~~eI~~~--l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 148 (301)
T PF14362_consen 78 KRLLQALPRLLLAVLIAIVISEPLELKIFEKEIDQK--L-------DEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQ 148 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3444566663 46777888888777632 2 3333333333333333 35667777777777777
Q ss_pred HhhHHHHHHHHHHH
Q 004449 643 VENTALRQEMEAAK 656 (753)
Q Consensus 643 ~EnA~lR~EmEAaK 656 (753)
.|+.++.++..++.
T Consensus 149 ~~~~~~~~~~~~~~ 162 (301)
T PF14362_consen 149 AEIDQLEKEIDRAQ 162 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776654
No 264
>PLN02718 Probable galacturonosyltransferase
Probab=57.23 E-value=99 Score=37.27 Aligned_cols=83 Identities=22% Similarity=0.260 Sum_probs=64.4
Q ss_pred HHHhhhcHHHHHHHHHhHHHHHHHHHHHhh---hhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHH
Q 004449 579 ARRLSKDKAELKTLRQEKEEVERLKKEKQI---LEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (753)
Q Consensus 579 arRL~kdk~ELksLR~EkEE~erlkKeKq~---lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAa 655 (753)
.-++..-..-.+.||+-..|.||.=-|--. |-.+.-+++.+||..|.||.....-..+.+++|..-.-....|+.++
T Consensus 183 ~a~~~~~~~~~~el~~~i~e~~~~l~~~~~d~~lp~~~~~~~~~m~~~~~~a~~~~~d~~~~~~klr~~~~~~e~~~~~~ 262 (603)
T PLN02718 183 LAPPGSNSQLVKELRLRTKELERAVGDATKDKDLSKSALQRMKSMEVTLYKASRVFPNCPAIATKLRAMTYNTEEQVRAQ 262 (603)
T ss_pred HhccCCcHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455567788888888887433222 56667799999999999999999999999999999888888888888
Q ss_pred HHHHHH
Q 004449 656 KLRAAE 661 (753)
Q Consensus 656 KL~A~E 661 (753)
|.+++-
T Consensus 263 ~~q~~~ 268 (603)
T PLN02718 263 KNQAAY 268 (603)
T ss_pred HHHHHH
Confidence 877653
No 265
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=57.17 E-value=5.6e+02 Score=33.38 Aligned_cols=31 Identities=10% Similarity=0.075 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 686 QKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (753)
Q Consensus 686 QK~lLQEELa~EK~Kl~~l~qel~qak~~q~ 716 (753)
....|=++|...-+++..+.++-.++++.-+
T Consensus 266 ~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~ 296 (1109)
T PRK10929 266 INRELSQALNQQAQRMDLIASQQRQAASQTL 296 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777666533
No 266
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=57.15 E-value=4.2e+02 Score=31.92 Aligned_cols=12 Identities=42% Similarity=0.432 Sum_probs=8.3
Q ss_pred HHhHHHHHHHHH
Q 004449 552 KLIPRVRELHNQ 563 (753)
Q Consensus 552 kLv~rv~eLq~q 563 (753)
.-|.+|+-|+.|
T Consensus 53 ~YIekVR~LEaq 64 (546)
T KOG0977|consen 53 VYIEKVRFLEAQ 64 (546)
T ss_pred HHHHHHHHHHHH
Confidence 567777777765
No 267
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=57.10 E-value=3.8e+02 Score=31.40 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=11.9
Q ss_pred HHHhhCCCCChHHHHHHHHHhCC
Q 004449 217 VLREVRPFFSTGDAMWCLLICDM 239 (753)
Q Consensus 217 fLrs~fP~LS~~DAmwyLLlADa 239 (753)
|+..+.||- .+++-|+.--+.
T Consensus 35 ~f~~~vP~~--e~lv~~~e~~~~ 55 (582)
T PF09731_consen 35 FFEEYVPYG--EELVDYIEEEES 55 (582)
T ss_pred HHHHhCCcH--HHHHHHHhhhcc
Confidence 556666764 555666555443
No 268
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=57.01 E-value=4.7e+02 Score=33.08 Aligned_cols=62 Identities=29% Similarity=0.347 Sum_probs=35.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQK-ALFQEELVTEKRKVVQLLQELDQAK 712 (753)
Q Consensus 637 ~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK-~lLQEELa~EK~Kl~~l~qel~qak 712 (753)
--||=|.|+..+++|||+ |..+.|-...-| .--|++- .-+||-|+.|+.+-++-|+.++|-+
T Consensus 945 k~rre~ee~k~~k~e~e~-kRK~eEeqr~~q-------------ee~e~~l~~e~q~qla~e~eee~k~q~~~Eqer 1007 (1259)
T KOG0163|consen 945 KRRREEEEKKRAKAEMET-KRKAEEEQRKAQ-------------EEEERRLALELQEQLAKEAEEEAKRQNQLEQER 1007 (1259)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh-------------hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345667788888899986 333333222111 1112221 2366777888777777777666654
No 269
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.48 E-value=2.9e+02 Score=29.93 Aligned_cols=64 Identities=23% Similarity=0.219 Sum_probs=35.6
Q ss_pred HHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHH
Q 004449 590 KTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEA 654 (753)
Q Consensus 590 ksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEA 654 (753)
++++.-.|=++++-..++ =+++-.+-|.|.||.|.+-..=+++-+..--++|.|+...+.|.|+
T Consensus 41 ~~~nS~~efar~lS~~~~-e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEv 104 (246)
T KOG4657|consen 41 RSMNSLVEFARALSQSQV-ELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEV 104 (246)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444422222 2334456677888888777666666666666666666555555443
No 270
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=56.23 E-value=2.6e+02 Score=29.20 Aligned_cols=126 Identities=20% Similarity=0.211 Sum_probs=58.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004449 587 AELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASC 666 (753)
Q Consensus 587 ~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc 666 (753)
.+++.|+++.+....- .....+...---+.++|..|..+..+|..+......++.+...+.---+.+--.-++.....
T Consensus 52 ~~~~~l~~~l~~l~~~--~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l 129 (240)
T PF12795_consen 52 KEIRELQKELEALKSQ--DAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRL 129 (240)
T ss_pred HHHHHHHHHHHhhhcc--ccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 3445555443332111 23344444555566666666666666666555555555555555444444444444444444
Q ss_pred HHHHHHHHHhHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 667 QEVSKREKKTQMK--FQSWEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (753)
Q Consensus 667 ~Ev~krekk~lkk--~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~ 714 (753)
+++-.+-...--. -..=+-++.+|+-|++.-+.++..++++|.-...+
T Consensus 130 ~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~r 179 (240)
T PF12795_consen 130 QEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNR 179 (240)
T ss_pred HHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHH
Confidence 4444432210000 11123444455555555555555555554444443
No 271
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=56.22 E-value=2.5e+02 Score=29.14 Aligned_cols=151 Identities=17% Similarity=0.151 Sum_probs=86.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHH--HHH
Q 004449 547 DEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEME--NAL 624 (753)
Q Consensus 547 DEmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmE--nAL 624 (753)
|+-..+--..|.+|++||+. +.+++-.|.+-..+|-..=-+-- .++..|...| .+|
T Consensus 11 D~~F~~~k~~i~~Le~~Lk~--------l~~~~e~lv~~r~ela~~~~~f~--------------~s~~~L~~~E~~~~L 68 (224)
T cd07623 11 DQWFEEKQQQIENLDQQLRK--------LHASVESLVNHRKELALNTGSFA--------------KSAAMLSNCEEHTSL 68 (224)
T ss_pred CHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhcccchhH
Confidence 56667777777778877763 33444444433333322211111 1445555544 456
Q ss_pred HHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH--
Q 004449 625 CKASGQVERANSAVRRLEVENTALRQEMEAAKLR-----AAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTE-- 697 (753)
Q Consensus 625 ~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~-----A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~E-- 697 (753)
.++=.++-.+.-.++++..+.|. -|..+|. -.....++..++-.-.+.+-..|..+++-.+.++=++.-
T Consensus 69 s~al~~la~~~~ki~~~~~~qa~----~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~ 144 (224)
T cd07623 69 SRALSQLAEVEEKIEQLHGEQAD----TDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLEL 144 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666666555332 1222222 234566677788888888888888877655555543332
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004449 698 ---KRKVVQLLQELDQAKALQEQLEEMSN 723 (753)
Q Consensus 698 ---K~Kl~~l~qel~qak~~q~q~E~~~~ 723 (753)
-+|+.+++.|+..++..+.+++.++.
T Consensus 145 ~~~~~K~~~~~~ev~~~e~~~~~a~~~fe 173 (224)
T cd07623 145 SGRTDKLDQAQQEIKEWEAKVDRGQKEFE 173 (224)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24788888888888777766666554
No 272
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=55.85 E-value=4.1e+02 Score=31.47 Aligned_cols=165 Identities=21% Similarity=0.258 Sum_probs=94.4
Q ss_pred HHhHHHHHHHHHHHHhhHHHHH-HHHHHHHHhhhcHHHHHHHHHhHHHH---------------HHHHHHHhhhhhh---
Q 004449 552 KLIPRVRELHNQLHEWTEWANQ-KVMQAARRLSKDKAELKTLRQEKEEV---------------ERLKKEKQILEEN--- 612 (753)
Q Consensus 552 kLv~rv~eLq~qlqewtdWAnq-KvMQAarRL~kdk~ELksLR~EkEE~---------------erlkKeKq~lEe~--- 612 (753)
.|-.++.+++.++.+..+|... --.+|..=|.+=+.++..|+...+.+ +.|+.+-+.|++.
T Consensus 165 ~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~ 244 (560)
T PF06160_consen 165 ELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYY 244 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCC
Confidence 4667888899888888888776 55555555555556666666555543 2333333333322
Q ss_pred -----hhhhHHHHHHHHHHhh-----hhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 004449 613 -----TMKKLSEMENALCKAS-----GQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQS 682 (753)
Q Consensus 613 -----T~KrLsEmEnAL~kas-----gQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qs 682 (753)
=.+++.+++..|..+. ++++.|...+..++.++..|-.-||.- +.+-..|-+.-......+..
T Consensus 245 l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E-------~~Ak~~V~~~~~~l~~~l~~ 317 (560)
T PF06160_consen 245 LEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKE-------VEAKKYVEKNLKELYEYLEH 317 (560)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHH
Confidence 3366666666666654 456667777777777776655444421 22334455555556666677
Q ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhh
Q 004449 683 WEKQKALFQEELVTEK----------RKVVQLLQELDQAKALQEQLEEMSN 723 (753)
Q Consensus 683 WEkQK~lLQEELa~EK----------~Kl~~l~qel~qak~~q~q~E~~~~ 723 (753)
-..|-..|..|+..-+ ....++.+++.++...-..++.++.
T Consensus 318 ~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~ 368 (560)
T PF06160_consen 318 AKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIE 368 (560)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776433 3344444444444444444444333
No 273
>PF09686 Plasmid_RAQPRD: Plasmid protein of unknown function (Plasmid_RAQPRD); InterPro: IPR019110 This entry identifies a family of proteins, around 100 amino acids in length, that include a predicted signal sequence and a perfectly conserved motif, RAQPRD, towards the C terminus. They are found in the Pseudomonas putida TOL plasmid pWW0 and in cryptic plasmid regions of Salmonella enterica subsp. enterica serovar Typhi and Pseudomonas syringae pv. tomato str. DC3000. The function of these proteins is unknown.
Probab=55.12 E-value=20 Score=32.61 Aligned_cols=45 Identities=24% Similarity=0.393 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCccccCcchhhh
Q 004449 694 LVTEKRKVVQLLQELDQAKALQEQLEEMSNETALISDPWRYDYNACWFQ 742 (753)
Q Consensus 694 La~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~~~~~~~~~~~~~~~ 742 (753)
-+.||+.|+.+.++|.+++..-++.+..-++. ++=||.|+--|+.
T Consensus 6 ~a~Er~~LA~~~rqLd~l~~~~~rA~~~a~~~----~~~R~~FdY~rl~ 50 (81)
T PF09686_consen 6 QAAEREELALAIRQLDQLEALLERAEAQANQS----PSSRYYFDYPRLR 50 (81)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----CCCceeecHHHHH
Confidence 36899999999999999999998887766543 2225555544553
No 274
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=55.10 E-value=4.1e+02 Score=31.24 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=11.4
Q ss_pred hhcHHHHHHHHHhHHHHHHHHHHHhhh
Q 004449 583 SKDKAELKTLRQEKEEVERLKKEKQIL 609 (753)
Q Consensus 583 ~kdk~ELksLR~EkEE~erlkKeKq~l 609 (753)
--.+.||+.+.=.-.|-+.|..+.+.|
T Consensus 195 ~~ql~ELe~~~l~~~E~e~L~~e~~~L 221 (563)
T TIGR00634 195 QFQLEELEEADLQPGEDEALEAEQQRL 221 (563)
T ss_pred HHHHHHHHhCCcCCCcHHHHHHHHHHH
Confidence 334444444443333344444444443
No 275
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=55.04 E-value=5.9e+02 Score=32.98 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhhhh---hhhhHHHHHHHHHHhhhhhHhhhhHHHHHH
Q 004449 599 VERLKKEKQILEEN---TMKKLSEMENALCKASGQVERANSAVRRLE 642 (753)
Q Consensus 599 ~erlkKeKq~lEe~---T~KrLsEmEnAL~kasgQlerAns~vrrLE 642 (753)
.+.|+++|+.++.. +-+-|.-|+..+.++..+|...+-.+.+++
T Consensus 478 ~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~ 524 (1041)
T KOG0243|consen 478 KELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQE 524 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554544 333344444555566555555554454443
No 276
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=54.95 E-value=77 Score=35.53 Aligned_cols=43 Identities=33% Similarity=0.383 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhhhhhhh---hhHHHHHHHHHHhhhhhHhhhhHH
Q 004449 596 KEEVERLKKEKQILEENTM---KKLSEMENALCKASGQVERANSAV 638 (753)
Q Consensus 596 kEE~erlkKeKq~lEe~T~---KrLsEmEnAL~kasgQlerAns~v 638 (753)
.||.++|.+|-|.|||.-+ .||.|+....++.++.+++-.-..
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrL 48 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRL 48 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888754 677777777666666666544433
No 277
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=54.79 E-value=5.1e+02 Score=32.19 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=31.4
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHhhHH-HHHHHHHHHHHhhhcHHHHHHH
Q 004449 543 QDKRDEIILKLIPRVRELHNQLHEWTEW-ANQKVMQAARRLSKDKAELKTL 592 (753)
Q Consensus 543 ~D~KDEmilkLv~rv~eLq~qlqewtdW-AnqKvMQAarRL~kdk~ELksL 592 (753)
.-+--|||--=++-++-|+.+++.-.+| .+||. ||...-.||..|
T Consensus 61 lsqqaelis~qlqE~rrle~e~~~lre~sl~qkm-----rLe~qa~Ele~l 106 (739)
T PF07111_consen 61 LSQQAELISRQLQELRRLEEEVRALRETSLQQKM-----RLEAQAEELEAL 106 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHH
Confidence 3456688888888889999999999999 45554 344444455555
No 278
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=53.90 E-value=2.6e+02 Score=32.21 Aligned_cols=10 Identities=30% Similarity=0.275 Sum_probs=4.2
Q ss_pred HHhHHHHHHH
Q 004449 593 RQEKEEVERL 602 (753)
Q Consensus 593 R~EkEE~erl 602 (753)
+++.+++++.
T Consensus 38 ~~~L~eAe~a 47 (445)
T PRK13428 38 RQQLAESATA 47 (445)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 279
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.65 E-value=5.2e+02 Score=32.00 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=6.9
Q ss_pred HHHHHHHHHhHHHHHHH
Q 004449 586 KAELKTLRQEKEEVERL 602 (753)
Q Consensus 586 k~ELksLR~EkEE~erl 602 (753)
++---..|+..++++|.
T Consensus 87 k~~~i~~r~~~~~~dr~ 103 (716)
T KOG4593|consen 87 KAQSILARNYEAEVDRK 103 (716)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444444443
No 280
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=53.50 E-value=2.8e+02 Score=28.84 Aligned_cols=72 Identities=25% Similarity=0.341 Sum_probs=48.5
Q ss_pred HHHHHHHHH----hhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHH
Q 004449 573 QKVMQAARR----LSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTAL 648 (753)
Q Consensus 573 qKvMQAarR----L~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~l 648 (753)
+|++|+++- |.--+..|..|.+|..|++.. +.|....|..+...+..|..+++..+.+...|
T Consensus 49 ~kA~qaA~aAeAaL~GKq~iveqLe~ev~EAe~v--------------V~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L 114 (188)
T PF05335_consen 49 DKAAQAAKAAEAALAGKQQIVEQLEQEVREAEAV--------------VQEEKASLQQAQANAQAAQRAAQQAQQQLETL 114 (188)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888774 555567788888888888776 45555666666666666666666666666666
Q ss_pred HHHHHHHHHH
Q 004449 649 RQEMEAAKLR 658 (753)
Q Consensus 649 R~EmEAaKL~ 658 (753)
+.=++.++=.
T Consensus 115 ~~~l~~a~~n 124 (188)
T PF05335_consen 115 KAALKAAQAN 124 (188)
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 281
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=53.50 E-value=85 Score=35.79 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=23.1
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhh
Q 004449 589 LKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERAN 635 (753)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAn 635 (753)
++-+|...+++.+--+.+. +. ....+|.++.+..++...|+|..+
T Consensus 4 ~k~ir~n~~~v~~~l~~R~-~~-~~vd~i~~ld~~~r~l~~~~~~lr 48 (425)
T PRK05431 4 IKLIRENPEAVKEALAKRG-FP-LDVDELLELDEERRELQTELEELQ 48 (425)
T ss_pred HHHHHhCHHHHHHHHHhcC-Cc-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566766666654444442 22 225555565555555555554333
No 282
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=53.34 E-value=2.6e+02 Score=28.41 Aligned_cols=38 Identities=11% Similarity=0.344 Sum_probs=32.2
Q ss_pred chhHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004449 545 KRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRL 582 (753)
Q Consensus 545 ~KDEmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL 582 (753)
....+.-.|+.-.+.-+.+.++|.|=.+-+++..+...
T Consensus 45 ~~~~l~~~l~~~q~~ak~ha~~w~d~~~P~ii~~~~~I 82 (184)
T PF05791_consen 45 KLSDLQKDLVQHQKTAKEHAKEWLDTIKPQIIDLNQDI 82 (184)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 45667889999999999999999999988888877766
No 283
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=53.16 E-value=4.3e+02 Score=30.90 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=42.4
Q ss_pred HhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q 004449 626 KASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEEL 694 (753)
Q Consensus 626 kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEEL 694 (753)
-...+.+-++.-++.|+..+..++.|+.-.+..+.....++.+-.+.-...+.-...=|-+-.+++.|+
T Consensus 278 ~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el 346 (511)
T PF09787_consen 278 ELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQEL 346 (511)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 344566677777888888888888888777777777666665555444444333222244444444444
No 284
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=52.93 E-value=99 Score=35.20 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=26.8
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHhhhhhHh
Q 004449 589 LKTLRQEKEEVERLKKEKQILEEN-TMKKLSEMENALCKASGQVER 633 (753)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lEe~-T~KrLsEmEnAL~kasgQler 633 (753)
+|.+|...|++.+--+.+-. ..+ ...+|.++.+..++...|+|.
T Consensus 4 ik~ir~n~~~v~~~l~~R~~-~~~~~vd~i~~ld~~~r~~~~~~~~ 48 (418)
T TIGR00414 4 RKLLRNNPDLVKESLKARGL-SVDIDLEKLIALDDERKKLLSEIEE 48 (418)
T ss_pred HHHHHhCHHHHHHHHHhcCC-ChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 56778887777655444432 222 456677777777776666654
No 285
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=52.87 E-value=3.4e+02 Score=29.66 Aligned_cols=121 Identities=21% Similarity=0.305 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHH-----------HhhHHHHHHHHHHHHHHHHHHH
Q 004449 596 KEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLE-----------VENTALRQEMEAAKLRAAESAA 664 (753)
Q Consensus 596 kEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE-----------~EnA~lR~EmEAaKL~A~ES~~ 664 (753)
+...+++|.|-|..|+-.-++++.++.-+....+.|..++.-|+=|- +.+|.|..+.+..|=+-.+=..
T Consensus 62 ~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEld 141 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELD 141 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777788888889999999999999999999988888764 4788888888877755444333
Q ss_pred HHHHHHHHHHHhHHH--------------------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 665 SCQEVSKREKKTQMK--------------------------FQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQL 718 (753)
Q Consensus 665 sc~Ev~krekk~lkk--------------------------~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~ 718 (753)
..-+..+.+...+-+ ...|+. ..++.||.-.|.-|.++.+++.+.+.--+++
T Consensus 142 el~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N--~~m~kei~~~re~i~el~e~I~~L~~eV~~L 219 (258)
T PF15397_consen 142 ELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLEN--QVMQKEIVQFREEIDELEEEIPQLRAEVEQL 219 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333332222211 111333 3466788888888888877776655443333
No 286
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.65 E-value=3.9e+02 Score=32.46 Aligned_cols=96 Identities=20% Similarity=0.265 Sum_probs=61.6
Q ss_pred hhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH-
Q 004449 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQE- 692 (753)
Q Consensus 614 ~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQE- 692 (753)
.-|+.||||.|++....|.+..+---||+.+++.+..--.+.-+.--.--.-.-|..-||..-|-..--.|.+.|-||.
T Consensus 106 l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKq 185 (772)
T KOG0999|consen 106 LQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQ 185 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3589999999999999999999988899888887765433333332222334555566666666655556665555554
Q ss_pred ---------HHHHHHHHHHHHHHHHH
Q 004449 693 ---------ELVTEKRKVVQLLQELD 709 (753)
Q Consensus 693 ---------ELa~EK~Kl~~l~qel~ 709 (753)
|...-|+-|..|.++.+
T Consensus 186 Vs~LR~sQVEyEglkheikRleEe~e 211 (772)
T KOG0999|consen 186 VSNLRQSQVEYEGLKHEIKRLEEETE 211 (772)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 33444555555555443
No 287
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=52.53 E-value=2.3e+02 Score=27.46 Aligned_cols=68 Identities=22% Similarity=0.322 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHhHHHH
Q 004449 619 EMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAE---SAASCQEVSKREKKTQMKFQSWEKQ 686 (753)
Q Consensus 619 EmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~E---S~~sc~Ev~krekk~lkk~qsWEkQ 686 (753)
.++-.+.+....+++.+..+.+|+.+++++.+|+..++-.... -..+-....|.++..+.|++.|-.+
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~ 126 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ 126 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555443322221 1222333444555555555555444
No 288
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=52.49 E-value=4.6 Score=48.20 Aligned_cols=30 Identities=27% Similarity=0.332 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 681 QSWEKQKALFQEELVTEKRKVVQLLQELDQ 710 (753)
Q Consensus 681 qsWEkQK~lLQEELa~EK~Kl~~l~qel~q 710 (753)
...++|-..|+.++.++..++.++..++.+
T Consensus 366 e~~k~qi~eLe~~l~~~~~~~~~l~~e~~~ 395 (713)
T PF05622_consen 366 EEYKKQIQELEQKLSEESRRADKLEFENKQ 395 (713)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555444444444433
No 289
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=52.44 E-value=48 Score=39.31 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=8.0
Q ss_pred ccCCCCchhHHHHHH
Q 004449 539 HLVPQDKRDEIILKL 553 (753)
Q Consensus 539 ~~VP~D~KDEmilkL 553 (753)
..+|.+++|+++-.|
T Consensus 11 l~~~~~~~~~~l~~L 25 (646)
T PRK05771 11 IVTLKSYKDEVLEAL 25 (646)
T ss_pred EEEEHHHHHHHHHHH
Confidence 345555666555444
No 290
>PRK10093 primosomal replication protein N''; Provisional
Probab=52.38 E-value=1.7e+02 Score=30.11 Aligned_cols=38 Identities=24% Similarity=0.216 Sum_probs=33.9
Q ss_pred hhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 004449 627 ASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAA 664 (753)
Q Consensus 627 asgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~ 664 (753)
..+++++++=.+.||-..+.+|..|.-..+|+..|...
T Consensus 61 ~~~~~~~~~flaEkL~aQi~ALqRElatq~lR~~e~~~ 98 (171)
T PRK10093 61 EQQQLPQVAWLAEHLAAQLEAIAREAAAWSLREWDSAP 98 (171)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCCCC
Confidence 36788899999999999999999999999999998843
No 291
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=52.25 E-value=45 Score=31.57 Aligned_cols=48 Identities=27% Similarity=0.333 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAES 662 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES 662 (753)
.+|.+||.-|.....+|..-...+..|.-||+.||.|-+.-+-+-.+.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999998887665554443
No 292
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=52.06 E-value=6.1e+02 Score=32.32 Aligned_cols=139 Identities=22% Similarity=0.246 Sum_probs=77.8
Q ss_pred HHHHHHhhhcHHHHHHHHHhHHHHHHHHH-HH---hhhhhhhhhhHHHHHHHHHHhhhhhHhhhh-------HHHHHHHh
Q 004449 576 MQAARRLSKDKAELKTLRQEKEEVERLKK-EK---QILEENTMKKLSEMENALCKASGQVERANS-------AVRRLEVE 644 (753)
Q Consensus 576 MQAarRL~kdk~ELksLR~EkEE~erlkK-eK---q~lEe~T~KrLsEmEnAL~kasgQlerAns-------~vrrLE~E 644 (753)
|-...++--+++-+.-..+-+.+.+-+-+ +| .+|-+.--.+|.|||+-|.+-+...+.|.- -.++|.+|
T Consensus 886 enkihK~egEltcaE~i~q~kdee~altdhekeasicl~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE 965 (1424)
T KOG4572|consen 886 ENKIHKKEGELTCAECIKQMKDEEEALTDHEKEASICLIEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAE 965 (1424)
T ss_pred hhHHHHhhhhhHHHHHHHHcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHH
Confidence 33444555555555444444444444322 22 233344446799999999998888877643 34566655
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 645 NTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 645 nA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
|-+ ..|+|-|.|...| .+--++++. ...-+|---|.-|....+.-+..+.++++++....+|.|+.++|
T Consensus 966 ~da-eLe~~~ael~ele---------qk~le~~eD-ea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQ 1034 (1424)
T KOG4572|consen 966 IDA-ELEKEFAELIELE---------QKALECKED-EAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQ 1034 (1424)
T ss_pred HHH-HHHHHHHHHHHHH---------HHHHHHhhh-HHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 432 1223333333322 222222221 22334444556667777777778888888888888888888876
Q ss_pred c
Q 004449 725 T 725 (753)
Q Consensus 725 ~ 725 (753)
.
T Consensus 1035 e 1035 (1424)
T KOG4572|consen 1035 E 1035 (1424)
T ss_pred c
Confidence 5
No 293
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=51.60 E-value=1.7e+02 Score=32.74 Aligned_cols=70 Identities=26% Similarity=0.405 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhh
Q 004449 555 PRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERA 634 (753)
Q Consensus 555 ~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerA 634 (753)
.+|.+|=.-|+.|.-++.. |=.=..-|++|+.=++++..+ ..+|.++|.-...-..+++.-
T Consensus 295 ~KI~eLy~~l~~~~~~~~~--------lP~lv~RL~tL~~lH~~a~~~-----------~~~l~~le~~q~~l~~~l~~~ 355 (388)
T PF04912_consen 295 SKIDELYEILPRWDPYAPS--------LPSLVERLKTLKSLHEEAAEF-----------SQTLSELESQQSDLQSQLKKW 355 (388)
T ss_pred hHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888776 455566789999999999766 578888888888888888888
Q ss_pred hhHHHHHHH
Q 004449 635 NSAVRRLEV 643 (753)
Q Consensus 635 ns~vrrLE~ 643 (753)
+.++..+|.
T Consensus 356 ~~~L~~ve~ 364 (388)
T PF04912_consen 356 EELLNKVEE 364 (388)
T ss_pred HHHHHHHHH
Confidence 888887774
No 294
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=51.58 E-value=4.4e+02 Score=32.61 Aligned_cols=10 Identities=30% Similarity=0.082 Sum_probs=4.6
Q ss_pred CcHHHHhhcc
Q 004449 239 MNVSHACAMD 248 (753)
Q Consensus 239 aDLl~A~am~ 248 (753)
+++++|+.|+
T Consensus 83 ~~~L~ae~~~ 92 (811)
T KOG4364|consen 83 MVALLAEEMS 92 (811)
T ss_pred ccchhhhhcc
Confidence 4444444444
No 295
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=51.55 E-value=1.6e+02 Score=35.10 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=48.4
Q ss_pred cCCCCchhHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHH----------hhhcHHHHHHHHHhHHHHHHH
Q 004449 540 LVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARR----------LSKDKAELKTLRQEKEEVERL 602 (753)
Q Consensus 540 ~VP~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvMQAarR----------L~kdk~ELksLR~EkEE~erl 602 (753)
.+|..++.-++=++|+|++|+-.++..-++=-++|+-|.+|- |+.-+.++|.+|+||||...+
T Consensus 190 ~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~ 262 (596)
T KOG4360|consen 190 LTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEH 262 (596)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 355566666777999999999999999999999999888763 344456678888888876443
No 296
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=51.36 E-value=2.2e+02 Score=28.51 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTAL----------RQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWE 684 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~l----------R~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWE 684 (753)
-|+.-.|-++.-.-..||.|+.+|+. .|+-.+ +--|++.|++-.+..= ....++|..=+
T Consensus 29 ~r~a~a~~~~~~r~seldqA~~~~~e--ae~k~~~~~a~~P~~~~~~~wqlkvr~a~~dv---------~nkq~~l~AA~ 97 (136)
T PF11570_consen 29 ERQASAEQALNGRRSELDQANKKVKE--AEIKQDEFFANNPPHEYGRGWQLKVRRAQKDV---------QNKQNKLKAAQ 97 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCTT-TTSSCHHHHHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH--HHhcccccccCCCccccccHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 46677778899999999999999998 222211 1246665555333221 22334456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 685 KQKALFQEELVTEKRKVVQLLQELDQAKALQEQ 717 (753)
Q Consensus 685 kQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q 717 (753)
+.+.-+++||..-+.-|.+..+.--|...-++.
T Consensus 98 ~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~d 130 (136)
T PF11570_consen 98 KELNAADEELNRIQAALSQAMERRKQKESKKKD 130 (136)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 666666666665554444444444333333333
No 297
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=51.24 E-value=2.7e+02 Score=34.42 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=45.4
Q ss_pred HHHHHHHHhhhcHHHHHHHHHhHH----HHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHH
Q 004449 574 KVMQAARRLSKDKAELKTLRQEKE----EVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALR 649 (753)
Q Consensus 574 KvMQAarRL~kdk~ELksLR~EkE----E~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR 649 (753)
-++..|+|++-+...+..=+.-.. +++++ -..||+ ...++|.....+......+...-++||.+..+++
T Consensus 484 ~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~l---i~~L~~----~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 556 (771)
T TIGR01069 484 YAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVL---IEKLSA----LEKELEQKNEHLEKLLKEQEKLKKELEQEMEELK 556 (771)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHH---HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999988777765444332 22222 111111 1112333333333344444445556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004449 650 QEMEAAKLRAAESAASCQEVSK 671 (753)
Q Consensus 650 ~EmEAaKL~A~ES~~sc~Ev~k 671 (753)
++.+.....|.+-+....+-.+
T Consensus 557 ~~~~~~~~~a~~ea~~~~~~a~ 578 (771)
T TIGR01069 557 ERERNKKLELEKEAQEALKALK 578 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555555555544333333
No 298
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.20 E-value=4.8e+02 Score=30.80 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=22.6
Q ss_pred HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 004449 550 ILKLIPRVRELHNQLHEWTEWANQKVMQAARR 581 (753)
Q Consensus 550 ilkLv~rv~eLq~qlqewtdWAnqKvMQAarR 581 (753)
.+-||+|+-.|+.|+++--==|-+.+-.-+||
T Consensus 252 nlqLvhR~h~LEEq~reqElraeE~l~Ee~rr 283 (502)
T KOG0982|consen 252 NLQLVHRYHMLEEQRREQELRAEESLSEEERR 283 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 35677777777777777776677766666655
No 299
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=51.08 E-value=1.8e+02 Score=27.03 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=31.8
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhhh-hhH-------HHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHH
Q 004449 588 ELKTLRQEKEEVERLKKEKQILEENTM-KKL-------SEMENALCKASGQVERANSAVRRLEVENTALRQEME 653 (753)
Q Consensus 588 ELksLR~EkEE~erlkKeKq~lEe~T~-KrL-------sEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmE 653 (753)
.+..|-.++.|++.-.++-..|++++. =|+ ...+.|+..-...++..+..+.+|+.....++.+++
T Consensus 25 q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~ 98 (110)
T TIGR02338 25 QKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLK 98 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666655432 000 123344444444444445555555555555554443
No 300
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=51.06 E-value=81 Score=33.72 Aligned_cols=94 Identities=17% Similarity=0.293 Sum_probs=55.3
Q ss_pred hhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhHHHH
Q 004449 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK-------------LRAAESAASCQEVSKREKKTQMKF 680 (753)
Q Consensus 614 ~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaK-------------L~A~ES~~sc~Ev~krekk~lkk~ 680 (753)
++|-.+|+.||.- .+--.-..++.+=|.+++|+=|-... +-.-=+...|. .
T Consensus 148 ~~rR~~i~e~I~~----~~~d~~de~~~~wE~aQ~rkg~~~~~~~~~~~~~~~ip~~tpLP~L~~~~---~--------- 211 (254)
T PF15458_consen 148 RRRREEIEEAIND----DDDDSEDEERAEWEAAQLRKGMDGLSDEKDRYKPPPIPKITPLPSLSECL---E--------- 211 (254)
T ss_pred HHHHHHHHHHHHh----cccccchhhHHHHHHHHHHhhccCCccchhccCCCCCcccCCCCchhHHH---H---------
Confidence 4566677777766 11112234555666777777776665 00001222333 2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 681 QSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 681 qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
......+.|+...+....+|..|++|++.+...++++...++|
T Consensus 212 -rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l~~ 254 (254)
T PF15458_consen 212 -RLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQELLKE 254 (254)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2222335556666666778888888888888888888887764
No 301
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=50.85 E-value=30 Score=36.29 Aligned_cols=97 Identities=25% Similarity=0.337 Sum_probs=64.3
Q ss_pred CcccccCCCCchhHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 004449 535 TSLEHLVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTM 614 (753)
Q Consensus 535 ~~l~~~VP~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~ 614 (753)
.+++.=||.|+=|.++-.|- ++- +|...+..++. .|.....-.+.|+.|+.+++....|-+. ..|+
T Consensus 96 ~~ltiRVP~~~~~~~l~~l~----~~g-~v~~~~~~~~D----vT~~y~D~~arl~~l~~~~~rl~~ll~k-----a~~~ 161 (262)
T PF14257_consen 96 ASLTIRVPADKFDSFLDELS----ELG-KVTSRNISSED----VTEQYVDLEARLKNLEAEEERLLELLEK-----AKTV 161 (262)
T ss_pred EEEEEEECHHHHHHHHHHHh----ccC-ceeeeeccccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCH
Confidence 46667788887776655443 443 55555555544 3333334445677777777766555332 2266
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhh
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVEN 645 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~En 645 (753)
.-+.+.|+.|....+|+|+.+...+.|+...
T Consensus 162 ~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 162 EDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7788999999999999999999988887543
No 302
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=50.44 E-value=75 Score=34.22 Aligned_cols=60 Identities=25% Similarity=0.264 Sum_probs=42.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 639 RRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQL 718 (753)
Q Consensus 639 rrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~ 718 (753)
.|++-.|...|+..+++|.... + ...+...|..|..+.+.+|.+|++||.+.+....+.
T Consensus 197 err~rNN~A~~kSR~~~k~~~~--------------------e-~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 197 ERRRRNNEAVRKSRDKRKQKED--------------------E-MAHRVAELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HHHHhhhHHHHHhhhhHHHHHH--------------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455667777777777776651 1 223456677777888888999999999998887765
Q ss_pred H
Q 004449 719 E 719 (753)
Q Consensus 719 E 719 (753)
.
T Consensus 256 ~ 256 (269)
T KOG3119|consen 256 P 256 (269)
T ss_pred c
Confidence 4
No 303
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=50.35 E-value=82 Score=33.78 Aligned_cols=100 Identities=17% Similarity=0.266 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHH-HHHH-----------------------H------HHHHHH
Q 004449 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA-KLRA-----------------------A------ESAASC 666 (753)
Q Consensus 617 LsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAa-KL~A-----------------------~------ES~~sc 666 (753)
|.+++..|..+..++++....+.+||...+.+-.+..+. +... . ....+.
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Confidence 456777888888888888888888888888777663332 1111 1 133445
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004449 667 QEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMS 722 (753)
Q Consensus 667 ~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~ 722 (753)
+.|...-..-. ..--.-|.+|+...++++..|++|++..+.---++=.|+
T Consensus 81 LpIVtsQRDRF------R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 81 LPIVTSQRDRF------RQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544333222 223345677777777777777777777766544443443
No 304
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=50.22 E-value=2.2e+02 Score=26.56 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=22.4
Q ss_pred HHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHH
Q 004449 619 EMENALCKASGQVERANSAVRRLEVENTALRQEMEA 654 (753)
Q Consensus 619 EmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEA 654 (753)
+...+|..+..+++.....+..|+........+++.
T Consensus 17 ~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 52 (141)
T TIGR02473 17 QAKLELAKAQAEFERLETQLQQLIKYREEYEQQALE 52 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666677777666666666544
No 305
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=50.16 E-value=1.5e+02 Score=34.92 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=15.4
Q ss_pred hHHHHHHhHHHHHHHHHHH
Q 004449 547 DEIILKLIPRVRELHNQLH 565 (753)
Q Consensus 547 DEmilkLv~rv~eLq~qlq 565 (753)
.+-|..||-++++|+.+++
T Consensus 58 ~DTlrTlva~~k~~r~~~~ 76 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLA 76 (472)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 3468999999999887765
No 306
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=50.00 E-value=69 Score=34.52 Aligned_cols=53 Identities=42% Similarity=0.598 Sum_probs=32.4
Q ss_pred HHHHHHHhHHH-HHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHH
Q 004449 588 ELKTLRQEKEE-VERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQE 651 (753)
Q Consensus 588 ELksLR~EkEE-~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~E 651 (753)
+||.++-|.-| .+.+.|||..| +|+|.|+|. .++..|-.+.+||+||+.|..+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL----~~eleele~-------e~ee~~erlk~le~E~s~LeE~ 185 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEEL----LKELEELEA-------EYEEVQERLKRLEVENSRLEEM 185 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444322 55555665444 567777764 4555666788899999987543
No 307
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=49.83 E-value=7.1e+02 Score=32.38 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHH--HHHHH----HHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q 004449 618 SEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR--AAESA----ASCQEVSKREKKTQMKFQSWEKQKALFQ 691 (753)
Q Consensus 618 sEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~--A~ES~----~sc~Ev~krekk~lkk~qsWEkQK~lLQ 691 (753)
-+|..-+.+.+.++++-...+--||-||+-|-.+.---|+- -..-. ..---..+..++.+++|.+...||-+|.
T Consensus 519 kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE 598 (1195)
T KOG4643|consen 519 KTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEKLE 598 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777777788888899999998887766662 11111 1111234556788999999999999999
Q ss_pred HHHHH
Q 004449 692 EELVT 696 (753)
Q Consensus 692 EELa~ 696 (753)
+||..
T Consensus 599 ~e~mn 603 (1195)
T KOG4643|consen 599 EEIMN 603 (1195)
T ss_pred HHHhh
Confidence 99853
No 308
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=49.21 E-value=1.8e+02 Score=25.42 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHhHHHH
Q 004449 572 NQKVMQAARRLSKDKAELKTLRQEKEEV 599 (753)
Q Consensus 572 nqKvMQAarRL~kdk~ELksLR~EkEE~ 599 (753)
.+.+.++-+.+-.-...|..|..++++.
T Consensus 4 ~~~l~~~~~~~~~~~~~l~~L~~~~~~~ 31 (123)
T PF02050_consen 4 EQELAEAQQELQEAEEQLEQLQQERQEY 31 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554
No 309
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=49.08 E-value=3.5e+02 Score=28.58 Aligned_cols=140 Identities=26% Similarity=0.314 Sum_probs=78.9
Q ss_pred HHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHH--------HHHHHHHhhhhhhhhhhHHHHHH
Q 004449 551 LKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEV--------ERLKKEKQILEENTMKKLSEMEN 622 (753)
Q Consensus 551 lkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~--------erlkKeKq~lEe~T~KrLsEmEn 622 (753)
-+|..-+-+|.++++.- |++.|-|+-|-.++..||++=++-||- ..+.+|.|.|. .++..++.
T Consensus 39 a~L~~e~~~L~~q~~s~-----Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~----~~i~~Lqe 109 (193)
T PF14662_consen 39 AQLAEEITDLRKQLKSL-----QQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLV----AEIETLQE 109 (193)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 34555566666666644 577777777777777777776665542 23444555443 23445555
Q ss_pred HHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHhHHHHHHHHHHHHHHHH
Q 004449 623 ALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREK----KTQMKFQSWEKQKALFQEELVTEK 698 (753)
Q Consensus 623 AL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krek----k~lkk~qsWEkQK~lLQEELa~EK 698 (753)
.-.|-.++.|.-+.....|-.+++.|+.+ +.-.|+..++.+..=-++ ..|++...| -..+-+||..|+
T Consensus 110 en~kl~~e~~~lk~~~~eL~~~~~~Lq~Q-----l~~~e~l~~~~da~l~e~t~~i~eL~~~ieE---y~~~teeLR~e~ 181 (193)
T PF14662_consen 110 ENGKLLAERDGLKKRSKELATEKATLQRQ-----LCEFESLICQRDAILSERTQQIEELKKTIEE---YRSITEELRLEK 181 (193)
T ss_pred HHhHHHHhhhhHHHHHHHHHHhhHHHHHH-----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHH
Confidence 55566666666666666776677777654 455666666665543332 223332222 234455665555
Q ss_pred HHHHHHHHHHHH
Q 004449 699 RKVVQLLQELDQ 710 (753)
Q Consensus 699 ~Kl~~l~qel~q 710 (753)
++ |.++|.|
T Consensus 182 s~---LEeql~q 190 (193)
T PF14662_consen 182 SR---LEEQLSQ 190 (193)
T ss_pred HH---HHHHHHh
Confidence 44 4555544
No 310
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=48.94 E-value=1.1e+02 Score=32.00 Aligned_cols=65 Identities=25% Similarity=0.372 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhh-------------------HhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 004449 598 EVERLKKEKQILEENTMKKLSEMENALCKASGQV-------------------ERANSAVRRLEVENTALRQEMEAAKLR 658 (753)
Q Consensus 598 E~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQl-------------------erAns~vrrLE~EnA~lR~EmEAaKL~ 658 (753)
|=+++++.|+.||+.=++|.+.+.....-|..|. .|=...|.-||.|++..|+++++....
T Consensus 24 Eh~~f~~Ak~rLe~~hr~r~~~VmkeW~eaE~~~~~l~~~DPk~Ae~~k~~m~~rFQ~~v~aLE~e~~~er~qL~~~H~q 103 (193)
T PF12925_consen 24 EHQRFKEAKERLEEKHRERMTKVMKEWSEAEERYKELPKADPKKAEQFKKEMTQRFQKTVQALEQEAAAERQQLVETHQQ 103 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888888888888888777776665555442 233468889999999999999988766
Q ss_pred HHHH
Q 004449 659 AAES 662 (753)
Q Consensus 659 A~ES 662 (753)
-++.
T Consensus 104 RV~a 107 (193)
T PF12925_consen 104 RVQA 107 (193)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 311
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=48.80 E-value=2.4e+02 Score=28.29 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=43.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHh-----HHHHHHHHHHHHHHHHHHHHHH
Q 004449 638 VRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQ--------MKFQS-----WEKQKALFQEELVTEKRKVVQL 704 (753)
Q Consensus 638 vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~l--------kk~qs-----WEkQK~lLQEELa~EK~Kl~~l 704 (753)
...+++..++||.||...--+......++.+-+++|-..| .++++ +.-+|.-..+|.+....||.++
T Consensus 53 ~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~ 132 (177)
T PF07798_consen 53 EYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQEL 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555444444444444444444443332 23333 4456677777888888887776
Q ss_pred HHHHHH-HHHHHHHHHH
Q 004449 705 LQELDQ-AKALQEQLEE 720 (753)
Q Consensus 705 ~qel~q-ak~~q~q~E~ 720 (753)
...+.. +..+.-+||.
T Consensus 133 ~~ki~~ei~~lr~~iE~ 149 (177)
T PF07798_consen 133 NNKIDTEIANLRTEIES 149 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 555432 3344555554
No 312
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=48.67 E-value=3.9e+02 Score=29.00 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=31.1
Q ss_pred HHHHHHHhhHHHHH-------HHHHHHHHhhhcHHHHHHHHHhH-HHHHHHHHHH
Q 004449 560 LHNQLHEWTEWANQ-------KVMQAARRLSKDKAELKTLRQEK-EEVERLKKEK 606 (753)
Q Consensus 560 Lq~qlqewtdWAnq-------KvMQAarRL~kdk~ELksLR~Ek-EE~erlkKeK 606 (753)
....|.+|.|-|.| -+.|++.-|.+--.+|+..|+.. ++..+++++.
T Consensus 68 ~~~~L~~~~~~a~q~e~~a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~~klqk~l 122 (252)
T cd07675 68 FYNILNELNDYAGQREVVAEEMGHRVYGELMRYSHDLKGERKMHLQEGRKAQQYL 122 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556555544 56677777777778888888888 6666665533
No 313
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.11 E-value=1.2e+02 Score=33.30 Aligned_cols=59 Identities=20% Similarity=0.212 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 666 CQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 666 c~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
..++-+..+...+.+++.-.|-..+|..+..-+.++.++++++.+.++-.++.+..|+|
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666666666666666666666666666665555555555554
No 314
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=47.69 E-value=1.9e+02 Score=25.26 Aligned_cols=31 Identities=16% Similarity=0.393 Sum_probs=13.3
Q ss_pred HHHHHhhhhhHhhhhHHHHHHHhhHHHHHHH
Q 004449 622 NALCKASGQVERANSAVRRLEVENTALRQEM 652 (753)
Q Consensus 622 nAL~kasgQlerAns~vrrLE~EnA~lR~Em 652 (753)
..|..+..+++++...+..|+.....+...+
T Consensus 5 ~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~ 35 (123)
T PF02050_consen 5 QELAEAQQELQEAEEQLEQLQQERQEYQEQL 35 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333
No 315
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.47 E-value=7.4e+02 Score=31.96 Aligned_cols=151 Identities=26% Similarity=0.329 Sum_probs=81.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHH-Hhhhhhh--hhhhH-HHHHHHHHH---hhhhhHhh
Q 004449 562 NQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKE-KQILEEN--TMKKL-SEMENALCK---ASGQVERA 634 (753)
Q Consensus 562 ~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKe-Kq~lEe~--T~KrL-sEmEnAL~k---asgQlerA 634 (753)
.|++||+ -|+|+.---|- -||+--|+|++|++..|.+ |+.|-|- ||.=+ .+.|-|=.+ -...|+-+
T Consensus 265 eqlqEfk----Skim~qqa~Lq---rel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~l 337 (1243)
T KOG0971|consen 265 EQLQEFK----SKIMEQQADLQ---RELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEAL 337 (1243)
T ss_pred HHHHHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4677775 46777665554 4677788898888877653 3333332 22211 122333333 34577888
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhHHHH---HhHHHH-HHHHHHHHHHHHHHHHHH
Q 004449 635 NSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVS------KREKKTQMKF---QSWEKQ-KALFQEELVTEKRKVVQL 704 (753)
Q Consensus 635 ns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~------krekk~lkk~---qsWEkQ-K~lLQEELa~EK~Kl~~l 704 (753)
.-.+-.||++.--||+|||-- =.++. +.|--+.. -|-|.+|-|+ -+=||| .-+||.|+..-++.+.+|
T Consensus 338 kEr~deletdlEILKaEmeek-G~~~~-~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL 415 (1243)
T KOG0971|consen 338 KERVDELETDLEILKAEMEEK-GSDGQ-AASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEEL 415 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCCc-ccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHH
Confidence 888999999999999999853 11111 11111111 2333333333 233443 235566666555555555
Q ss_pred HHHHHHHHHHHHHHHHh
Q 004449 705 LQELDQAKALQEQLEEM 721 (753)
Q Consensus 705 ~qel~qak~~q~q~E~~ 721 (753)
.+.-+.....-+++|..
T Consensus 416 ~r~kE~Lsr~~d~aEs~ 432 (1243)
T KOG0971|consen 416 RRQKERLSRELDQAEST 432 (1243)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55544444444444433
No 316
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=47.37 E-value=1.7e+02 Score=35.70 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=62.3
Q ss_pred HHHhhhcHHHHHHHHHhHHHHHHHHHHH---hhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHH
Q 004449 579 ARRLSKDKAELKTLRQEKEEVERLKKEK---QILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (753)
Q Consensus 579 arRL~kdk~ELksLR~EkEE~erlkKeK---q~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAa 655 (753)
.-++.....-.+.||+-..|.||.=-|- .-|+-+.-+|+..||..|.+|.....-.++.++||..-.-....|+.++
T Consensus 215 iak~~~~~~l~~eL~~~i~e~~r~ls~a~~d~dlp~~~~~k~~~M~~~l~~ak~~~~d~~~~~~KLraml~~~Ee~~~~~ 294 (657)
T PLN02910 215 IAKSNNVTNLYVSLMKQFRENKRAIGEATSDAELHSSALDQAKAMGHVLSIAKDQLYDCHTMARKLRAMLQSTERKVDAL 294 (657)
T ss_pred HhccCCcHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555677787777777763321 1234445689999999999999999999999999999988888888888
Q ss_pred HHHHHH
Q 004449 656 KLRAAE 661 (753)
Q Consensus 656 KL~A~E 661 (753)
|.+++-
T Consensus 295 k~qs~~ 300 (657)
T PLN02910 295 KKKSAF 300 (657)
T ss_pred HHHHHH
Confidence 877653
No 317
>PTZ00121 MAEBL; Provisional
Probab=47.32 E-value=9e+02 Score=32.91 Aligned_cols=10 Identities=20% Similarity=0.152 Sum_probs=5.6
Q ss_pred CCCCcCcccC
Q 004449 524 NCGYAGILSD 533 (753)
Q Consensus 524 ~~~~~~i~~D 533 (753)
.++|-++.||
T Consensus 1073 ~~s~~~~~~~ 1082 (2084)
T PTZ00121 1073 KPSYKDFDFD 1082 (2084)
T ss_pred ccccccccch
Confidence 3455566666
No 318
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=47.28 E-value=1.3e+02 Score=38.66 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=27.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 678 MKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (753)
Q Consensus 678 kk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~ 714 (753)
++++.||.....+.++.++.+.+|.+++++.++++..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (1123)
T PRK11448 177 QELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQE 213 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3467787777777778888888888887777666555
No 319
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=47.18 E-value=3.2e+02 Score=27.66 Aligned_cols=101 Identities=23% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHH---
Q 004449 578 AARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEA--- 654 (753)
Q Consensus 578 AarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEA--- 654 (753)
++.+-.....|+..||.+++..+.-++.++.+-.-.-++|.++|-.++.-...+.. .|..|+.+|-.|......
T Consensus 41 ~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~---~v~~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 41 LASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQS---QVEQLEEENRQLELKLKNLSD 117 (158)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhh
Q ss_pred --HHHHHHHHH--HHHHHHHHHHHHhHHHHH
Q 004449 655 --AKLRAAESA--ASCQEVSKREKKTQMKFQ 681 (753)
Q Consensus 655 --aKL~A~ES~--~sc~Ev~krekk~lkk~q 681 (753)
..|.+.|+. .-...+..|+.+-++++.
T Consensus 118 q~~rlee~e~~l~~e~~~l~er~~e~l~~~~ 148 (158)
T PF09744_consen 118 QSSRLEEREAELKKEYNRLHERERELLRKLK 148 (158)
T ss_pred hccccchhHHHHHHHHHHHHHHHHHHHHHHH
No 320
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=47.17 E-value=2.9e+02 Score=27.20 Aligned_cols=65 Identities=18% Similarity=0.256 Sum_probs=37.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 640 RLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (753)
Q Consensus 640 rLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qa 711 (753)
-|.-.+..|-.|+|.+--+-.++..-..++..+ ....|++-.-|..+..+--.|+.++...+..+
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~-------ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVK-------AEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 355566677777776666555555555555544 55555555555555555555666665555544
No 321
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=46.92 E-value=94 Score=33.98 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=27.9
Q ss_pred HhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhh
Q 004449 581 RLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVEN 645 (753)
Q Consensus 581 RL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~En 645 (753)
+|...+.+|+..+.+.+-.++|.+..- -+...+.+.++.+..+..+++.+.+.+..++...
T Consensus 114 ~l~~a~~~l~~a~~~~~r~~~L~~~g~----is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 174 (370)
T PRK11578 114 QRQQAEAELKLARVTLSRQQRLAKTQA----VSQQDLDTAATELAVKQAQIGTIDAQIKRNQASL 174 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554444533211 1333445555555555555554444444333333
No 322
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=46.87 E-value=82 Score=29.77 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=26.1
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 667 QEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQEL 708 (753)
Q Consensus 667 ~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel 708 (753)
+=+-++|++-|++| |.+|++|+..++.+|.+|++.+
T Consensus 64 ~Y~r~~EkEqL~~L------k~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 64 QYFRKKEKEQLKKL------KEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777777776 5677888888888888877765
No 323
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=46.52 E-value=3.5e+02 Score=27.88 Aligned_cols=93 Identities=18% Similarity=0.274 Sum_probs=52.4
Q ss_pred HHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q 004449 622 NALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEV----SKREKKTQMKFQSWEKQKALFQEELVTE 697 (753)
Q Consensus 622 nAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev----~krekk~lkk~qsWEkQK~lLQEELa~E 697 (753)
..|..+-.+||-..-..-.|+..|+.||.++|.++..--.-....+.+ .+=-.+...|=..|..+...+..=+..|
T Consensus 60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~e 139 (182)
T PF15035_consen 60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSE 139 (182)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 334445556666666666666667777777666654321111111110 0001111222346777777888888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004449 698 KRKVVQLLQELDQAKAL 714 (753)
Q Consensus 698 K~Kl~~l~qel~qak~~ 714 (753)
-.+|..|=.++...+-.
T Consensus 140 h~rll~LWr~v~~lRr~ 156 (182)
T PF15035_consen 140 HSRLLSLWREVVALRRQ 156 (182)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 88888888887766644
No 324
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=46.41 E-value=6.5e+02 Score=30.97 Aligned_cols=86 Identities=17% Similarity=0.257 Sum_probs=49.4
Q ss_pred HHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004449 623 ALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVV 702 (753)
Q Consensus 623 AL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~ 702 (753)
.+..+...++....+.++- +..|+.+|+.-|..-.+....|.+.-+.-+.+++... .++.+|+.....+.
T Consensus 224 ~~~~~~~~l~~~~~~~~~~---i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 224 DLRRNIKPLEGLESTIKKK---IQALQQELEELKAELKELNDQVSLLTREVQEALKESN-------TLQSDLESLEENLV 293 (670)
T ss_pred hHHHhhhhhhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 4555556666555555554 6777777776665555555555555444444443332 22777777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 004449 703 QLLQELDQAKALQEQL 718 (753)
Q Consensus 703 ~l~qel~qak~~q~q~ 718 (753)
+...|.++-+++-+++
T Consensus 294 ~~~~e~~~r~kL~N~i 309 (670)
T KOG0239|consen 294 EKKKEKEERRKLHNEI 309 (670)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6665555555555444
No 325
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=46.08 E-value=3.7e+02 Score=29.54 Aligned_cols=111 Identities=21% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHhhhcHHHHHH-----------HHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHh
Q 004449 576 MQAARRLSKDKAELKT-----------LRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVE 644 (753)
Q Consensus 576 MQAarRL~kdk~ELks-----------LR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~E 644 (753)
..++|.|+.|++..-+ ||.++..+=...=|...+|-.=..-+..+.--+.++..+|+...+..-.||.+
T Consensus 119 lk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~K 198 (267)
T PF10234_consen 119 LKAARQLASEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAK 198 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 645 NTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQE 707 (753)
Q Consensus 645 nA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qe 707 (753)
+.--+.|.| ...|||++..+=|=-+.||.......|.++.+.
T Consensus 199 Iekkk~ELE---------------------R~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~ 240 (267)
T PF10234_consen 199 IEKKKQELE---------------------RNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEI 240 (267)
T ss_pred HHHHHHHHH---------------------HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
No 326
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=46.03 E-value=89 Score=37.62 Aligned_cols=67 Identities=30% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q 004449 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (753)
Q Consensus 617 LsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~ 696 (753)
|.||-|||.-...-| -+-|-.|..|+--||-|.||+|-- -.-+|.|...|.|||..
T Consensus 313 LLetKNALNiVKNDL---IakVDeL~~E~~vLrgElea~kqa---------------------k~Klee~i~elEEElk~ 368 (832)
T KOG2077|consen 313 LLETKNALNIVKNDL---IAKVDELTCEKDVLRGELEAVKQA---------------------KLKLEEKIRELEEELKK 368 (832)
T ss_pred HHhhhhHHHHHHHHH---HHHHHhhccHHHHHhhHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 004449 697 EKRKVVQLLQE 707 (753)
Q Consensus 697 EK~Kl~~l~qe 707 (753)
-|+++-...|+
T Consensus 369 ~k~ea~~ar~~ 379 (832)
T KOG2077|consen 369 AKAEAEDARQK 379 (832)
T ss_pred HHHHHHHHHHh
No 327
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.57 E-value=80 Score=28.77 Aligned_cols=69 Identities=30% Similarity=0.433 Sum_probs=43.0
Q ss_pred hcHHHHHHHHHhHHHHHHHHHHH--hhhhhhhhhhHHHHHHHHHHhhhh------------hHhhhhHHHHHHHhhHHHH
Q 004449 584 KDKAELKTLRQEKEEVERLKKEK--QILEENTMKKLSEMENALCKASGQ------------VERANSAVRRLEVENTALR 649 (753)
Q Consensus 584 kdk~ELksLR~EkEE~erlkKeK--q~lEe~T~KrLsEmEnAL~kasgQ------------lerAns~vrrLE~EnA~lR 649 (753)
....|+..||.+.+..+....-- ..|+.-+.+-|..+|.-|..|-.+ ++.-..-++.|+.+|..|+
T Consensus 16 ~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~ 95 (100)
T PF01486_consen 16 ELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLR 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777877777766442211 135556899999988887776553 4444445566666666666
Q ss_pred HHH
Q 004449 650 QEM 652 (753)
Q Consensus 650 ~Em 652 (753)
.++
T Consensus 96 ~~~ 98 (100)
T PF01486_consen 96 QKI 98 (100)
T ss_pred HHh
Confidence 554
No 328
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=45.53 E-value=2.1e+02 Score=27.53 Aligned_cols=68 Identities=24% Similarity=0.273 Sum_probs=45.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 641 LEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSW---EKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (753)
Q Consensus 641 LE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsW---EkQK~lLQEELa~EK~Kl~~l~qel~qak~~ 714 (753)
=+.+...|..+++-||-+.-+.--. .-.+.|..++.+ ++-+...|++|..-++||.+.+.||.+|+..
T Consensus 22 C~~K~~~Ie~qI~~Ak~~gN~~rv~------GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~ 92 (115)
T PF06476_consen 22 CEAKEQAIEKQIEYAKAHGNQHRVA------GLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAK 92 (115)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777777777654332211 122334444443 5667778899999999999999999988765
No 329
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=45.23 E-value=8.5e+02 Score=31.99 Aligned_cols=64 Identities=22% Similarity=0.195 Sum_probs=41.8
Q ss_pred HHhhhhhHhhhh-HHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHhHHHHHH
Q 004449 625 CKASGQVERANS-AVRRLEVENTALRQEMEAAKLRAAE-SAASCQEVSKREKKTQMKFQSWEKQKA 688 (753)
Q Consensus 625 ~kasgQlerAns-~vrrLE~EnA~lR~EmEAaKL~A~E-S~~sc~Ev~krekk~lkk~qsWEkQK~ 688 (753)
.+.++||.+-|- .|.-|=.-+--.=.+||.......+ -+..|.+++.+-.++|-+...=+|||.
T Consensus 1240 DkLk~~LQ~iNQ~LV~~LIn~iR~slnqme~~tf~~q~~eiq~n~~ll~~L~~tlD~S~~a~Kqk~ 1305 (1439)
T PF12252_consen 1240 DKLKGQLQKINQNLVKALINTIRVSLNQMEVKTFEEQEKEIQQNLQLLDKLEKTLDDSDTAQKQKE 1305 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 344444444442 2333333333344678877777654 456899999999999999999888875
No 330
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=45.22 E-value=3.4e+02 Score=27.39 Aligned_cols=93 Identities=19% Similarity=0.281 Sum_probs=56.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q 004449 607 QILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQ 686 (753)
Q Consensus 607 q~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQ 686 (753)
+.|.|-..|+-.+....|+++-...+.+.--.+-|..+.-+++..+. -|+.+-=|+.+ .+..+.+
T Consensus 8 ~~l~dl~~k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~-~k~~~G~s~~q--------------~~nyq~f 72 (148)
T COG2882 8 QKLLDLAKKEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLN-EKLKSGVSAAQ--------------WQNYQQF 72 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccccHHH--------------HHHHHHH
Confidence 33455555666666777777777777777777777777666665542 24433333333 4555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 687 KALFQEELVTEKRKVVQLLQELDQAKAL 714 (753)
Q Consensus 687 K~lLQEELa~EK~Kl~~l~qel~qak~~ 714 (753)
-.-|+.+|...++.|.++...++++.+.
T Consensus 73 I~~Le~~I~q~~~~~~~~~~~ve~~r~~ 100 (148)
T COG2882 73 ISQLEVAIDQQQSQLSKLRKQVEQKREI 100 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666665543
No 331
>KOG1821 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.99 E-value=46 Score=38.34 Aligned_cols=93 Identities=25% Similarity=0.261 Sum_probs=69.1
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHhhhhhHhh------hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004449 604 KEKQILEENTMKKLSEMENALCKASGQVERA------NSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQ 677 (753)
Q Consensus 604 KeKq~lEe~T~KrLsEmEnAL~kasgQlerA------ns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~l 677 (753)
.|||.+|+...|++.|--.|-.+|-.---+. |..+|.||+|--.|...|.-|--+..|-...-||.
T Consensus 554 nekk~~eekkgKkh~e~sa~qan~~aaagngectetlnghaR~leaegkkltmdmkfaa~qdrehd~kaqee-------- 625 (662)
T KOG1821|consen 554 NEKKLMEEKKGKKHEEASAAQANAFAAAGNGECTETLNGHARELEAEGKKLTMDMKFAADQDREHDLKAQEE-------- 625 (662)
T ss_pred hHHHHHHHhcccchhhhhHHHHHHHHhccCCcchhhhcchhhhhhhccccccccchhhhhhhhhhhcchhhh--------
Confidence 4889999999999998766655544333333 77899999999999999988877777766665553
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004449 678 MKFQSWEKQKALFQEELVTEKRKVVQL 704 (753)
Q Consensus 678 kk~qsWEkQK~lLQEELa~EK~Kl~~l 704 (753)
.+...+|+.-.-|--+|.+-++|-..+
T Consensus 626 rdikemekdlEsL~SaiSa~qdkeedf 652 (662)
T KOG1821|consen 626 RDIKEMEKDLESLMSAISAMQDKEEDF 652 (662)
T ss_pred hhHHHhhHHHHHHHHHHHhhhhhHHHH
Confidence 346778888888888888777665444
No 332
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=44.88 E-value=2.5e+02 Score=25.76 Aligned_cols=51 Identities=24% Similarity=0.401 Sum_probs=43.0
Q ss_pred HhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 004449 632 ERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQS 682 (753)
Q Consensus 632 erAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qs 682 (753)
+.....|++|....+.|-+|++.+.=++..-...|.||+.|-+-.+..+.+
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~ 85 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRA 85 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667889999999999999999999999999999999998877776654
No 333
>PRK12705 hypothetical protein; Provisional
Probab=44.82 E-value=6.1e+02 Score=30.22 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHhhhhhHhhhhHHHHHHHhhH
Q 004449 616 KLSEMENALCKASGQVERANSAVRRLEVENT 646 (753)
Q Consensus 616 rLsEmEnAL~kasgQlerAns~vrrLE~EnA 646 (753)
||.+-|..|.+...+|++-...+.+.+.+..
T Consensus 85 rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~ 115 (508)
T PRK12705 85 RLVQKEEQLDARAEKLDNLENQLEEREKALS 115 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555444444443333
No 334
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=44.66 E-value=1.4e+02 Score=31.11 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 692 EELVTEKRKVVQLLQELDQAKALQEQLE 719 (753)
Q Consensus 692 EELa~EK~Kl~~l~qel~qak~~q~q~E 719 (753)
+|+..-+..+..++.++..++..-++++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 129 (322)
T TIGR01730 102 ADLDDAKAAVEAAQADLEAAKASLASAQ 129 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 335
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=44.60 E-value=5.8e+02 Score=29.91 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.7
Q ss_pred HHhHHHHHHHHHHHHhhH
Q 004449 552 KLIPRVRELHNQLHEWTE 569 (753)
Q Consensus 552 kLv~rv~eLq~qlqewtd 569 (753)
-|-.+|++|..||..|..
T Consensus 295 ~L~k~vQ~L~AQle~~R~ 312 (593)
T KOG4807|consen 295 ALEKEVQALRAQLEAWRL 312 (593)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467899999999999975
No 336
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=44.51 E-value=4.2e+02 Score=28.27 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 692 EELVTEKRKVVQLLQELDQAKALQEQLEE 720 (753)
Q Consensus 692 EELa~EK~Kl~~l~qel~qak~~q~q~E~ 720 (753)
.++...+..+.+++.+|++++...+....
T Consensus 179 ~~~~~~~~~~~~~~~~l~~a~~~l~~~~i 207 (327)
T TIGR02971 179 TDVDLAQAEVKSALEAVQQAEALLELTYV 207 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCEE
Confidence 44444555566666666666555444333
No 337
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=44.44 E-value=5.3e+02 Score=30.28 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH
Q 004449 558 RELHNQLHEWTEWANQKVMQAA 579 (753)
Q Consensus 558 ~eLq~qlqewtdWAnqKvMQAa 579 (753)
.+|+.+-|---.|--|+|.|.|
T Consensus 20 ~~laq~~k~~s~~~aq~~~~~a 41 (459)
T KOG0288|consen 20 TELAQCEKAQSRLSAQLVILRA 41 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445567778877754
No 338
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=44.43 E-value=3.9e+02 Score=27.90 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=6.4
Q ss_pred HHHHHHHHHhhhhh
Q 004449 598 EVERLKKEKQILEE 611 (753)
Q Consensus 598 E~erlkKeKq~lEe 611 (753)
+++.+.|.++.+..
T Consensus 107 ~~~k~qk~~~~~~~ 120 (239)
T cd07647 107 IMKRSQKNKKELYK 120 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555544433
No 339
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=44.21 E-value=1.7e+02 Score=25.82 Aligned_cols=53 Identities=28% Similarity=0.466 Sum_probs=39.1
Q ss_pred hhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 628 SGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQE 707 (753)
Q Consensus 628 sgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qe 707 (753)
..+||+==....+|..||+.||.+. ..|..+++.|.+=...-++||..+-..
T Consensus 6 e~kle~Li~~~~~L~~EN~~Lr~q~----------------------------~~~~~ER~~L~ekne~Ar~rvEamI~R 57 (65)
T TIGR02449 6 AAQVEHLLEYLERLKSENRLLRAQE----------------------------KTWREERAQLLEKNEQARQKVEAMITR 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666677889999999999875 457777777777777777777666555
Q ss_pred H
Q 004449 708 L 708 (753)
Q Consensus 708 l 708 (753)
|
T Consensus 58 L 58 (65)
T TIGR02449 58 L 58 (65)
T ss_pred h
Confidence 4
No 340
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=43.77 E-value=1.6e+02 Score=35.02 Aligned_cols=16 Identities=6% Similarity=-0.242 Sum_probs=6.6
Q ss_pred HhhCCCCChHHHHHHH
Q 004449 219 REVRPFFSTGDAMWCL 234 (753)
Q Consensus 219 rs~fP~LS~~DAmwyL 234 (753)
-.++|.+=...+..++
T Consensus 22 ~~~~dp~~K~~ie~~~ 37 (555)
T TIGR03545 22 YFFFDPLAKKAIERSL 37 (555)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3344444333333333
No 341
>TIGR01690 ICE_RAQPRD integrative conjugative element protein, RAQPRD family. This model represents a small family of proteins about 100 amino acids in length, including a predicted signal sequence and a perfectly conserved motif RAQPRD towards the C-terminus. Members are found in the Pseudomonas putida TOL plasmid pWW0 and in cryptic plasmid regions of Salmonella enterica subsp. enterica serovar Typhi and Pseudomonas syringae DC3000. The function is unknown.
Probab=43.71 E-value=37 Score=31.80 Aligned_cols=40 Identities=15% Similarity=0.449 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCccccC
Q 004449 695 VTEKRKVVQLLQELDQAKALQEQLEEMSNETALISDPWRYDY 736 (753)
Q Consensus 695 a~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~~~~~~~~~ 736 (753)
++||+.|+.+.++|.+++-.-++.+.--++.. ..-++|||
T Consensus 20 a~Ere~La~~~rQLd~le~~~~ra~~~a~~~~--~~Ry~FDY 59 (94)
T TIGR01690 20 ASEREQLAAAIRQLDALERSAQRAAVVAPQSP--GDRYHFDY 59 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CcCeecCH
Confidence 67999999999999999988888887777552 24566776
No 342
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=43.69 E-value=2.4e+02 Score=35.02 Aligned_cols=54 Identities=33% Similarity=0.337 Sum_probs=37.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH---hhhcHHHHH-HHHHhHHHHHHHHHHHhhhhhh
Q 004449 559 ELHNQLHEWTEWANQKVMQAARR---LSKDKAELK-TLRQEKEEVERLKKEKQILEEN 612 (753)
Q Consensus 559 eLq~qlqewtdWAnqKvMQAarR---L~kdk~ELk-sLR~EkEE~erlkKeKq~lEe~ 612 (753)
.|++...-..+=-+|++|++.++ |+.++...+ ++-+++|+.++++|++-+.|..
T Consensus 513 ~l~~~~~~k~~~~~q~~~~~~~~~~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~~ 570 (809)
T KOG0247|consen 513 ILQNNKSLKEKECRQKLMNAQLESQMLSSQLNDKKEQIEQLRDEIERLKKENLTTEYS 570 (809)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 46666666777889999999874 554444443 4677888888888877666543
No 343
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=43.50 E-value=3.5e+02 Score=28.25 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004449 664 ASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNET 725 (753)
Q Consensus 664 ~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~ 725 (753)
.+.-++-.+=.+..-.++.|+.+-.-++.+|.....-...+++.+..+.....+|+..++..
T Consensus 78 ~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~ 139 (240)
T PF12795_consen 78 LSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNL 139 (240)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45566666777788889999999999999999999999999999999999999999998864
No 344
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=43.37 E-value=89 Score=28.96 Aligned_cols=38 Identities=26% Similarity=0.186 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004449 684 EKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEM 721 (753)
Q Consensus 684 EkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~ 721 (753)
.+|-++||+|....+..++..+.++..++..|+.-|.-
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~ 66 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENT 66 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 45678999999999999999999999998888876653
No 345
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.23 E-value=4.5e+02 Score=28.59 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=32.2
Q ss_pred HHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHH
Q 004449 579 ARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLE 642 (753)
Q Consensus 579 arRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE 642 (753)
||+|+-++.|++.|.+-.+|+|--+++.-.|=+.---++.-+|-.+.-....+|+-..-.|.|+
T Consensus 50 ar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lk 113 (246)
T KOG4657|consen 50 ARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLK 113 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777766666665443333223222223444455555555555554333333333
No 346
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=43.05 E-value=1.5e+02 Score=34.59 Aligned_cols=110 Identities=32% Similarity=0.341 Sum_probs=65.2
Q ss_pred ccCCCCchhHHHHH-----HhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q 004449 539 HLVPQDKRDEIILK-----LIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENT 613 (753)
Q Consensus 539 ~~VP~D~KDEmilk-----Lv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T 613 (753)
.|.|+|.-.--||. || |.+|==--||++|+|-||-|.-.--.-+--..-|.-=|||-||.|.+ =--|++|.
T Consensus 101 ~w~~ddpDi~~~l~gvnSGLv-rAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgy---CsqLk~nC 176 (558)
T PF15358_consen 101 PWAPDDPDITELLEGVNSGLV-RAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGY---CSQLKENC 176 (558)
T ss_pred CCCCCCccHHHHHhhhcccce-ecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHH---HHHHHHHH
Confidence 46666654433332 55 88888889999999999988533333222333444558888887754 23345676
Q ss_pred hhhHHHHHHHHHHh-----------------hhhhHhhhhHHHHHHHhhHHHHHHHHH
Q 004449 614 MKKLSEMENALCKA-----------------SGQVERANSAVRRLEVENTALRQEMEA 654 (753)
Q Consensus 614 ~KrLsEmEnAL~ka-----------------sgQlerAns~vrrLE~EnA~lR~EmEA 654 (753)
+|=..-.|.|=-|+ .+||. .-.-||-|+|..+|.+-|||
T Consensus 177 rkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qLq--dE~prrqe~e~qELeqklea 232 (558)
T PF15358_consen 177 RKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQLQ--DETPRRQEAEWQELEQKLEA 232 (558)
T ss_pred HHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHhc--ccCcchhhhhHHHHHHHHhh
Confidence 66554455443333 22222 12334667788888887777
No 347
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=43.02 E-value=1.4e+02 Score=30.05 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHhH
Q 004449 573 QKVMQAARRLSKDKAELKTLRQEK 596 (753)
Q Consensus 573 qKvMQAarRL~kdk~ELksLR~Ek 596 (753)
.+++.-.++|.+-.++++.++++-
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~ 141 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQA 141 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 348
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=42.46 E-value=6.2e+02 Score=29.64 Aligned_cols=127 Identities=20% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004449 586 KAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAAS 665 (753)
Q Consensus 586 k~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~s 665 (753)
++.|..+|-|.+-++.- +.+.|..-.++..+++.+.-.-.-.+.+.+++|+++--|.-.-+..-+.
T Consensus 80 ~~qlr~~rtel~~a~~~--------------k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q 145 (499)
T COG4372 80 RPQLRALRTELGTAQGE--------------KRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQ 145 (499)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 004449 666 CQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNETA 726 (753)
Q Consensus 666 c~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~ 726 (753)
.+.+-.|-+.--..-+-.|-|+--||-+-+.-.--+.||.-+....+..+++||-.-++.+
T Consensus 146 ~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la 206 (499)
T COG4372 146 AQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLA 206 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 349
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=42.28 E-value=1.4e+02 Score=31.90 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Q 004449 639 RRLEVENTALRQEMEAAKLRAAES 662 (753)
Q Consensus 639 rrLE~EnA~lR~EmEAaKL~A~ES 662 (753)
-+++.|.+-||.+||++|++--+-
T Consensus 177 ~kId~Ev~~lk~qi~s~K~qt~qw 200 (220)
T KOG3156|consen 177 TKIDQEVTNLKTQIESVKTQTIQW 200 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999986553
No 350
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=42.23 E-value=2.7e+02 Score=25.62 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=18.5
Q ss_pred HHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 621 ENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 621 EnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
+.|+.-....++..+..+.+|+.+...++.+|+.-+
T Consensus 86 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 86 EEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555555443
No 351
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=42.13 E-value=4.8e+02 Score=28.21 Aligned_cols=134 Identities=17% Similarity=0.237 Sum_probs=76.9
Q ss_pred HHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhH-hhhhHHHHHHHhhHHHHHHHHH
Q 004449 576 MQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVE-RANSAVRRLEVENTALRQEMEA 654 (753)
Q Consensus 576 MQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQle-rAns~vrrLE~EnA~lR~EmEA 654 (753)
+.....++=|.+||..||+..+..+=+.+-.+.+.....-.|.+|+.-|..+..=.- .-+..+.+| ..-+..
T Consensus 141 l~~g~s~~v~lpel~~L~~~l~~~~W~~~~~~~~~~~~~~tL~~l~~Ll~~g~~l~~~~~~~~~~~L-------~~~l~~ 213 (335)
T PF08429_consen 141 LEEGESFGVDLPELDQLRRRLEQLEWLEEAREILSDPDRLTLDELRELLDEGERLGIPSDEKLMAEL-------QELLKQ 213 (335)
T ss_pred HHhcccCceeChhHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhhcCCCccchHHHHHH-------HHHHHH
Confidence 344445556778888888888777766666666666544567888888875544221 222223332 222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 655 AKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 655 aKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
+.-+.. -|..| ++++.-.+..+...-++-.. |-..-..+.+|.+.+..++..+.+++.-..+
T Consensus 214 ~~~We~-ka~~~---L~~~~~~l~~Le~l~~~~~~----ipv~~~~~~~L~~~l~kak~w~~~i~~ll~~ 275 (335)
T PF08429_consen 214 GEEWEE-KAKEL---LSRPRVSLEQLEALLEEAEN----IPVSLPSLDKLKDALQKAKEWLRQIEELLEQ 275 (335)
T ss_pred HHHHHH-HHHHH---HhcCCCCHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 322221 12222 22555555555555444422 3344456778888888888888888877654
No 352
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=41.91 E-value=5.3e+02 Score=28.68 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=53.5
Q ss_pred HHHHhHHHHHHHHHHHh----------hhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHH---HHHHH--
Q 004449 591 TLRQEKEEVERLKKEKQ----------ILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQ---EMEAA-- 655 (753)
Q Consensus 591 sLR~EkEE~erlkKeKq----------~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~---EmEAa-- 655 (753)
.|.+|..|-++++..-- .+=.+-+.++.+++..|..|+.==..-...++..+.-...|.. +++++
T Consensus 100 ~L~~E~~ed~~~R~k~g~~~Wtr~~S~~~~~~l~~~~~~~~~~L~~A~~sD~~v~~k~~~~~~~l~lL~~~~~~l~~~~P 179 (353)
T cd09236 100 ILDDEASEDESLRRKFGTDRWTRPDSHEANPKLYTQAAEYEGYLKQAGASDELVRRKLDEWEDLIQILTGDERDLENFVP 179 (353)
T ss_pred HHHHHHhHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCHHHHHHhCC
Confidence 46666666666655211 1222345788888888888775333333333333333333321 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q 004449 656 KLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEEL 694 (753)
Q Consensus 656 KL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEEL 694 (753)
+.....-..+--.+..+-+..|+++...++|+..+-++|
T Consensus 180 s~~~~~~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~L 218 (353)
T cd09236 180 SSRRPSIPPELERHVRALRVSLEELDRLESRRRRKVERA 218 (353)
T ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111100011233455666677777777777777777777
No 353
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=41.82 E-value=4.1e+02 Score=27.32 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=18.1
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHH
Q 004449 563 QLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEV 599 (753)
Q Consensus 563 qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~ 599 (753)
..+.-..+...|.+|+-.....-..++..|..|+++.
T Consensus 103 l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L 139 (189)
T PF10211_consen 103 LYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEEL 139 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777666543333333444444444433
No 354
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=41.48 E-value=2.5e+02 Score=28.81 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=12.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 640 RLEVENTALRQEMEAAKLRAAESAASCQE 668 (753)
Q Consensus 640 rLE~EnA~lR~EmEAaKL~A~ES~~sc~E 668 (753)
.++.+...|.++.+..+-.-.+-...+.+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333333
No 355
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=41.20 E-value=5.2e+02 Score=28.36 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=13.6
Q ss_pred hhHHHHHHHhhHHHHHHHHHH
Q 004449 635 NSAVRRLEVENTALRQEMEAA 655 (753)
Q Consensus 635 ns~vrrLE~EnA~lR~EmEAa 655 (753)
...+..|+.+.++++.|+.+.
T Consensus 213 ~~~i~~L~~~l~~~~~~l~~l 233 (362)
T TIGR01010 213 LSLISTLEGELIRVQAQLAQL 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345777777777777666543
No 356
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=41.19 E-value=2.3e+02 Score=26.79 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=11.7
Q ss_pred hHhhhhHHHHHHHhhHHHHHHH
Q 004449 631 VERANSAVRRLEVENTALRQEM 652 (753)
Q Consensus 631 lerAns~vrrLE~EnA~lR~Em 652 (753)
++.-+-.+.++|.++..|..|.
T Consensus 72 ie~L~~~l~~rE~e~~~Le~el 93 (94)
T PF04576_consen 72 IESLKDILYKREKEIQSLEAEL 93 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3334445556666666655553
No 357
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=41.17 E-value=2.4e+02 Score=30.91 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhhhhHhhhhH
Q 004449 618 SEMENALCKASGQVERANSA 637 (753)
Q Consensus 618 sEmEnAL~kasgQlerAns~ 637 (753)
.+++..+..+..+++.|+..
T Consensus 109 ~~~~~~l~~a~~~l~~a~~~ 128 (370)
T PRK11578 109 MELRAQRQQAEAELKLARVT 128 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555444433
No 358
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=40.91 E-value=1e+03 Score=31.69 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=17.0
Q ss_pred CchhHHHHHHhHHHHHHHHHHHHhhH
Q 004449 544 DKRDEIILKLIPRVRELHNQLHEWTE 569 (753)
Q Consensus 544 D~KDEmilkLv~rv~eLq~qlqewtd 569 (753)
+-..+.+..|+--+..++.-+++...
T Consensus 774 ~~~~~~~~~l~~~~~~~e~~~~d~~~ 799 (1294)
T KOG0962|consen 774 DAAEESAETLQTDVTVLERFLKDLKL 799 (1294)
T ss_pred chhHHhHHHHhhhhHHHHHHHHHHHH
Confidence 44555666777777777777766654
No 359
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=40.75 E-value=81 Score=37.49 Aligned_cols=52 Identities=23% Similarity=0.171 Sum_probs=41.3
Q ss_pred HhHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 004449 675 KTQMKFQSWEKQKALFQEELVTE-------KRKVVQLLQELDQAKALQEQLEEMSNETA 726 (753)
Q Consensus 675 k~lkk~qsWEkQK~lLQEELa~E-------K~Kl~~l~qel~qak~~q~q~E~~~~~~~ 726 (753)
+.-+++..+|.++..|+++|++. ..++.++.+++++++...++.+.+|-|-.
T Consensus 567 ~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~ 625 (638)
T PRK10636 567 RLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQ 625 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556778888888888888653 23799999999999999999999998754
No 360
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=40.71 E-value=2.7e+02 Score=24.86 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=22.0
Q ss_pred HhhhhhHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 626 KASGQVERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 626 kasgQlerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
+-...|.+|=-++.-|.+||.+|+.+-.+.+
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3345566666688888888888888766655
No 361
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.62 E-value=87 Score=36.73 Aligned_cols=46 Identities=9% Similarity=0.240 Sum_probs=29.6
Q ss_pred HhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHh
Q 004449 581 RLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVER 633 (753)
Q Consensus 581 RL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQler 633 (753)
|+..-..+|..||+|.++..+- .+.+-.||.+||..+..-..|++.
T Consensus 77 kasELEKqLaaLrqElq~~saq-------~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQ-------RGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3333345566666666655444 334467888999988888888853
No 362
>PRK12705 hypothetical protein; Provisional
Probab=40.26 E-value=7.1e+02 Score=29.69 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=26.3
Q ss_pred hhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHH
Q 004449 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEA 654 (753)
Q Consensus 613 T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEA 654 (753)
.+..+...|+-|.+...+|++-...+.+.|.++...+++.+.
T Consensus 75 ~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~ 116 (508)
T PRK12705 75 EREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSA 116 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455557777777777777776666666666555554443
No 363
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=40.19 E-value=1e+03 Score=31.60 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=6.5
Q ss_pred HHHHHHhhHHHHHHH
Q 004449 638 VRRLEVENTALRQEM 652 (753)
Q Consensus 638 vrrLE~EnA~lR~Em 652 (753)
++.||.+.-.+..+.
T Consensus 880 ~~qle~~~~~l~e~~ 894 (1294)
T KOG0962|consen 880 LQQLEEDIEELSEEI 894 (1294)
T ss_pred HHhhHHHHHHHHHHH
Confidence 344444444444433
No 364
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=40.13 E-value=3.5e+02 Score=26.14 Aligned_cols=77 Identities=19% Similarity=0.222 Sum_probs=54.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 639 RRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMK-FQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQ 717 (753)
Q Consensus 639 rrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk-~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q 717 (753)
-.++..++-|-.+||-.|.+--|- .++++.|+- ++..+.|..-+..-+..-+.||..+.+.|+.-|...-+
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL--------~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~ 83 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGEL--------AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLE 83 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH--------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777777787777765554 445555554 46677888888888888888888888888886666657
Q ss_pred HHHhhh
Q 004449 718 LEEMSN 723 (753)
Q Consensus 718 ~E~~~~ 723 (753)
+|.+.-
T Consensus 84 l~~r~~ 89 (107)
T PF09304_consen 84 LESRLL 89 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776643
No 365
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=39.87 E-value=5.9e+02 Score=28.61 Aligned_cols=126 Identities=21% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhh---hhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004449 590 KTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKAS---GQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASC 666 (753)
Q Consensus 590 ksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas---gQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc 666 (753)
+.||.=.||+.+|+.|-..|-..|. -+.|-|..| -. .|+.-||.-+-.|.-|.|.-.-| ...--...
T Consensus 167 ~Klk~LEeEN~~LR~Ea~~L~~et~-~~EekEqqL--v~dcv~QL~~An~qia~LseELa~k~Ee-------~~rQQEEI 236 (306)
T PF04849_consen 167 EKLKSLEEENEQLRSEASQLKTETD-TYEEKEQQL--VLDCVKQLSEANQQIASLSEELARKTEE-------NRRQQEEI 236 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHh-hccHHHHHH--HHHHHHHhhhcchhHHHHHHHHHHHHHH-------HHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004449 667 QEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNET 725 (753)
Q Consensus 667 ~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~ 725 (753)
..+..+--...+|++.---++..|+.-|...|.-=.+|+-||.-.+..-.+..+++.|+
T Consensus 237 t~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~Ea 295 (306)
T PF04849_consen 237 TSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEA 295 (306)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 366
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=39.70 E-value=1.6e+02 Score=32.46 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 004449 684 EKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNETA 726 (753)
Q Consensus 684 EkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~ 726 (753)
-++.+.=|.|+...+..+.+.+.++++++...++++..+..+-
T Consensus 131 ~~~~~iS~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~ 173 (385)
T PRK09578 131 VRDRAVSERDYTEAVADERQAKAAVASAKAELARAQLQLDYAT 173 (385)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCE
Confidence 3344444666666666666667777777766666666665443
No 367
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=39.36 E-value=7.9e+02 Score=29.97 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 645 NTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 645 nA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
...+..+-|+||....|..+..-|+.-.- -+.-+.+..+|... -+++|..+++-+..-+....++....+.
T Consensus 472 ~~~~Q~~~e~~~~e~~e~~~al~el~~~~------~~~~~~~~~~~~~n---~~sel~sl~~~~~~~~~r~~~~~~~l~~ 542 (607)
T KOG0240|consen 472 LSEIQEENEAAKDEVKEVLTALEELAVNY------DQKSEEKESKLSQN---LKSELQSLQEPSEHQSKRITELLSELRK 542 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHhhhhhhh---hHHHHHhhhhcccchhHHHHHHHHHHHh
Confidence 34444466666666555555444433221 11112222233322 3455666666666666666666666554
Q ss_pred c
Q 004449 725 T 725 (753)
Q Consensus 725 ~ 725 (753)
+
T Consensus 543 ~ 543 (607)
T KOG0240|consen 543 D 543 (607)
T ss_pred h
Confidence 3
No 368
>PLN02769 Probable galacturonosyltransferase
Probab=39.30 E-value=98 Score=37.47 Aligned_cols=78 Identities=23% Similarity=0.223 Sum_probs=56.7
Q ss_pred hhhcHHHHHHHHHhHHHHHHHHHHHhh---hhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 004449 582 LSKDKAELKTLRQEKEEVERLKKEKQI---LEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR 658 (753)
Q Consensus 582 L~kdk~ELksLR~EkEE~erlkKeKq~---lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~ 658 (753)
+.....-.+.||+-..|.||.=-|--. |..+--+++.+||..|.+|.....--++.++||..-......|+.+.+-+
T Consensus 203 ~~~~~~l~~el~~~i~e~~~~l~~~~~d~dlp~~~~~~~~~m~~~~~~ak~~~~dc~~~~~klr~~l~~~E~~~~~~~kq 282 (629)
T PLN02769 203 LPGQEKLTRELKQNIQEHERVLSESITDADLPPFIQKKLEKMEQTIARAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQ 282 (629)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556788888888877433322 44445599999999999999998888888999988777777777765544
Q ss_pred H
Q 004449 659 A 659 (753)
Q Consensus 659 A 659 (753)
.
T Consensus 283 ~ 283 (629)
T PLN02769 283 S 283 (629)
T ss_pred H
Confidence 3
No 369
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=39.20 E-value=56 Score=31.30 Aligned_cols=40 Identities=28% Similarity=0.298 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEA 654 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEA 654 (753)
.+|.+||.-|.....++..-...|..|..||+.||.|-+-
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~ 47 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDK 47 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999877543
No 370
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=39.13 E-value=5.8e+02 Score=28.29 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004449 683 WEKQKALFQEELVTEKRK 700 (753)
Q Consensus 683 WEkQK~lLQEELa~EK~K 700 (753)
-+.|.+..|++|+..+-.
T Consensus 104 ~~~q~aqY~D~LaRkR~~ 121 (276)
T PF12037_consen 104 QKQQRAQYEDELARKRYQ 121 (276)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566666666655543
No 371
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=38.85 E-value=46 Score=30.19 Aligned_cols=52 Identities=33% Similarity=0.448 Sum_probs=36.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHh-----------hhhhHhhhhHHHHHHHh
Q 004449 586 KAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKA-----------SGQVERANSAVRRLEVE 644 (753)
Q Consensus 586 k~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~ka-----------sgQlerAns~vrrLE~E 644 (753)
+..|..||.|.+...- +++.|+..|.++-.-|.++ .+-+|+.|.+|.++|++
T Consensus 3 ~~~L~~L~~eL~~~~~-------ld~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~av~~FE~~ 65 (85)
T PF14357_consen 3 QELLEKLHQELEQNPP-------LDEETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNEAVERFEAS 65 (85)
T ss_pred HHHHHHHHHHHhcCCC-------CCHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHh
Confidence 4667888888876543 4778888887766666552 24478888888888875
No 372
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=38.45 E-value=7.5e+02 Score=29.40 Aligned_cols=120 Identities=16% Similarity=0.209 Sum_probs=78.0
Q ss_pred hhhhHHHHHHHHHHhhhhhHhhh----------hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 004449 613 TMKKLSEMENALCKASGQVERAN----------SAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQS 682 (753)
Q Consensus 613 T~KrLsEmEnAL~kasgQlerAn----------s~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qs 682 (753)
..+.|.++....+....+++|-+ ..++.|+.+...|....+...-.-.+.....-++..+=++..+++..
T Consensus 311 l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ 390 (560)
T PF06160_consen 311 LYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEE 390 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666654 25677788888888888877777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCc
Q 004449 683 WEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNETALISDPW 732 (753)
Q Consensus 683 WEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~~~~~ 732 (753)
-+++-..+.+.|..-+..-...++.|.+.+..-.++..++.---|-.=|=
T Consensus 391 ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~ 440 (560)
T PF06160_consen 391 IEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPE 440 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 77777777666666655555555555555555555555554444444443
No 373
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=38.22 E-value=3.7e+02 Score=25.80 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=48.7
Q ss_pred HHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q 004449 621 ENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRK 700 (753)
Q Consensus 621 EnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~K 700 (753)
..+|.++...++.+...+..|+....+....+...-. .--+...+..|..=...|.+.|...+..
T Consensus 22 ~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~---------------~g~~~~~l~~~~~fl~~L~~~i~~q~~~ 86 (146)
T PRK07720 22 LGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQ---------------SGLSIQEIRHYQQFVTNLERTIDHYQLL 86 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777777777777777777766666544210 1122333566666666777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 004449 701 VVQLLQELDQAKAL 714 (753)
Q Consensus 701 l~~l~qel~qak~~ 714 (753)
|.++.+++++.++.
T Consensus 87 v~~~~~~ve~~r~~ 100 (146)
T PRK07720 87 VMQAREQMNRKQQD 100 (146)
T ss_pred HHHHHHHHHHHHHH
Confidence 77776666665543
No 374
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=38.21 E-value=1e+02 Score=36.81 Aligned_cols=84 Identities=25% Similarity=0.425 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHH
Q 004449 632 ERANSAVRRLEVENTALRQEMEAAKLRAAESA----ASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVV-QLLQ 706 (753)
Q Consensus 632 erAns~vrrLE~EnA~lR~EmEAaKL~A~ES~----~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~-~l~q 706 (753)
|-+..+-|-|-....-||.|||--|-...... ++...-..+..++|+..+. |+|..++.|++ +.||
T Consensus 449 d~~~~rer~l~a~t~kL~~E~e~~q~~~~~~l~~~~~~~~~em~~~r~tlE~k~~---------~n~~e~~kkl~~~~qr 519 (588)
T KOG3612|consen 449 DYSGSRERSLVAATEKLRQEFEELQQTSRRELPVPLRNFELEMAEMRKTLEQKHA---------ENIKEEIKKLAEEHQR 519 (588)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCcccc------Ccchh
Q 004449 707 ELDQAKALQEQLEEMSNETALISDPWRYD------YNACW 740 (753)
Q Consensus 707 el~qak~~q~q~E~~~~~~~~~~~~~~~~------~~~~~ 740 (753)
+|+++|.-| |-|. |+-||
T Consensus 520 ~l~etKkKQ----------------WC~nC~~EAiy~CCW 543 (588)
T KOG3612|consen 520 ALAETKKKQ----------------WCYNCLDEAIYHCCW 543 (588)
T ss_pred HHHHHHHHH----------------HHHhhhHHHHHHhhc
No 375
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=38.20 E-value=2.1e+02 Score=30.57 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=7.3
Q ss_pred hHhhhhHHHHHHHhh
Q 004449 631 VERANSAVRRLEVEN 645 (753)
Q Consensus 631 lerAns~vrrLE~En 645 (753)
++|-...+++|-...
T Consensus 113 I~R~~~ll~~l~~l~ 127 (216)
T KOG1962|consen 113 IRRLHTLLRELATLR 127 (216)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555554333
No 376
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=38.11 E-value=6.8e+02 Score=30.07 Aligned_cols=88 Identities=20% Similarity=0.316 Sum_probs=47.5
Q ss_pred HHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------hHHHHHHHHHH
Q 004449 621 ENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQ--------SWEKQKALFQE 692 (753)
Q Consensus 621 EnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~q--------sWEkQK~lLQE 692 (753)
+.-|.+-..|+..|++-+..+..|.-.|..-.+.+ .+.-.+|.+-++..+..+.++| +.|.|-..|-|
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~a----E~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSE 494 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESA----EKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSE 494 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34455667777777777777777776665554433 1112234444333333333332 45555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004449 693 ELVTEKRKVVQLLQELDQAK 712 (753)
Q Consensus 693 ELa~EK~Kl~~l~qel~qak 712 (753)
-|+.--.||++-.+++++.|
T Consensus 495 HLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 495 HLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555544
No 377
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=38.09 E-value=5.2e+02 Score=27.51 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 683 WEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQL 718 (753)
Q Consensus 683 WEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~ 718 (753)
-+.+...|...|..-..||.++...+..++......
T Consensus 111 ~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~a 146 (225)
T COG1842 111 AEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAA 146 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777776666665554433
No 378
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=38.05 E-value=2.3e+02 Score=32.16 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=20.0
Q ss_pred HHHHHhHHHHHHHHHHHHhhHHHHHHH
Q 004449 549 IILKLIPRVRELHNQLHEWTEWANQKV 575 (753)
Q Consensus 549 milkLv~rv~eLq~qlqewtdWAnqKv 575 (753)
.+-.+..++.+|++.+..-.=|.+++-
T Consensus 8 ~~~~~~~~~~~le~~~~~p~~w~d~~~ 34 (360)
T TIGR00019 8 KLESLLERYEELEALLSDPEVISDQDK 34 (360)
T ss_pred HHHHHHHHHHHHHHHhcCCccccCHHH
Confidence 344667788899999988777876643
No 379
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=37.97 E-value=9.9e+02 Score=30.68 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=15.5
Q ss_pred CCCchhHHHHHHhHHHHHHHHHHH
Q 004449 542 PQDKRDEIILKLIPRVRELHNQLH 565 (753)
Q Consensus 542 P~D~KDEmilkLv~rv~eLq~qlq 565 (753)
.-|.+++.+--|..|...-+..+-
T Consensus 565 ~ld~leaa~e~lE~r~~~~e~~~~ 588 (984)
T COG4717 565 ALDQLEAAYEALEGRFAAAEAAMA 588 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 346677777777777766665553
No 380
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=37.94 E-value=9e+02 Score=30.22 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 690 FQEELVTEKRKVVQLLQELDQAKAL 714 (753)
Q Consensus 690 LQEELa~EK~Kl~~l~qel~qak~~ 714 (753)
+|.||.+.+---++|..|+++++..
T Consensus 659 ~~keie~K~~~e~~L~~EveK~k~~ 683 (786)
T PF05483_consen 659 YQKEIESKSISEEELLGEVEKAKLT 683 (786)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4444444444444555555555544
No 381
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=37.93 E-value=6e+02 Score=28.13 Aligned_cols=105 Identities=24% Similarity=0.358 Sum_probs=55.6
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHH-hHH---HHHHHHHHHhhhhhh---hhhhHH
Q 004449 546 RDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQ-EKE---EVERLKKEKQILEEN---TMKKLS 618 (753)
Q Consensus 546 KDEmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~-EkE---E~erlkKeKq~lEe~---T~KrLs 618 (753)
..|.-+.=+-+.+||+.|+- .-|.-|+...+..+....+.+.. -.+ .++.+++.-..|..- =..|..
T Consensus 153 ~rE~~~~~~~k~keLE~Ql~------~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~ 226 (309)
T PF09728_consen 153 LREEHFEKLLKQKELEVQLA------EAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFE 226 (309)
T ss_pred HHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444456777777653 34555555555444444433333 000 233333222222111 236778
Q ss_pred HHHHHHHHhh-------hhhHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 619 EMENALCKAS-------GQVERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 619 EmEnAL~kas-------gQlerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
|.+..|.|.+ .++|+-.-.+.+||-||..++.--|.+-
T Consensus 227 efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n 271 (309)
T PF09728_consen 227 EFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSN 271 (309)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888887766 4667777777777777777666555443
No 382
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=37.36 E-value=2.6e+02 Score=31.81 Aligned_cols=48 Identities=23% Similarity=0.186 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccCCccccCcchhhhcccccCCC
Q 004449 701 VVQLLQELDQAKALQEQLEEMSNETALISDPWRYDYNACWFQQSALSSPN 750 (753)
Q Consensus 701 l~~l~qel~qak~~q~q~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (753)
+..+.+++..++..-+++|..+..-.|.+|| ||.+.||.+=++-.-|.
T Consensus 77 ~~~a~~e~~~l~~~~~~~e~~l~~~ll~~~~--~D~~~~~leI~aG~GG~ 124 (360)
T TIGR00019 77 REMAKEELEELEEKIEELEEQLKVLLLPKDP--NDEKNVILEIRAGTGGD 124 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CcCCCeEEEEECCCCcH
Confidence 3455566666666666666666555566777 79999999877655443
No 383
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=37.31 E-value=3e+02 Score=24.43 Aligned_cols=78 Identities=17% Similarity=0.327 Sum_probs=44.8
Q ss_pred HHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhh--hhH------HHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHH
Q 004449 578 AARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTM--KKL------SEMENALCKASGQVERANSAVRRLEVENTALR 649 (753)
Q Consensus 578 AarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~--KrL------sEmEnAL~kasgQlerAns~vrrLE~EnA~lR 649 (753)
...+|..-...+..|..++.+++...+|-..+++.+. +.+ ...+.++..-..+++.....+-+|+.+...+.
T Consensus 10 l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~ 89 (106)
T PF01920_consen 10 LNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLE 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556777788888888888888888888832 111 12333344444444455555555555555555
Q ss_pred HHHHHH
Q 004449 650 QEMEAA 655 (753)
Q Consensus 650 ~EmEAa 655 (753)
.+|+..
T Consensus 90 ~~l~~~ 95 (106)
T PF01920_consen 90 KKLKEL 95 (106)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 384
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=37.29 E-value=3.1e+02 Score=29.33 Aligned_cols=55 Identities=29% Similarity=0.322 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHH---hhhhhHhhhhHHHHHHHhhHHHHHHHH
Q 004449 599 VERLKKEKQILEENTMKKLSEMENALCK---ASGQVERANSAVRRLEVENTALRQEME 653 (753)
Q Consensus 599 ~erlkKeKq~lEe~T~KrLsEmEnAL~k---asgQlerAns~vrrLE~EnA~lR~EmE 653 (753)
....+.+...||+.-.++-+++|.|-.+ -..|.|.=+----||-.|++.|+.+.|
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3334444444555444444443333222 234555555555566666666665543
No 385
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=37.22 E-value=3.2e+02 Score=26.83 Aligned_cols=61 Identities=15% Similarity=0.369 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 660 AESAASCQEVSKREKKTQ-MKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEE 720 (753)
Q Consensus 660 ~ES~~sc~Ev~krekk~l-kk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~ 720 (753)
.+-.+.|.++.--++..| ++....|..-+.+-..+...+.+.+...+.|.++++...++..
T Consensus 37 Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~ 98 (131)
T PF10158_consen 37 QEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSR 98 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888777777766 8889999999999999999999999999999998888777653
No 386
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=37.10 E-value=1.8e+02 Score=32.30 Aligned_cols=52 Identities=17% Similarity=0.043 Sum_probs=34.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 004449 676 TQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNETAL 727 (753)
Q Consensus 676 ~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~~ 727 (753)
.++|.+.+-++.+.=++|+..-+..+.+.+.++++|+..-++++..+..+-+
T Consensus 125 ~~~R~~~L~~~g~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I 176 (397)
T PRK15030 125 TVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKV 176 (397)
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEE
Confidence 3455555656666666677666666666777777777777777776655443
No 387
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=36.99 E-value=4e+02 Score=25.79 Aligned_cols=95 Identities=19% Similarity=0.208 Sum_probs=68.6
Q ss_pred hhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHH
Q 004449 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEE 693 (753)
Q Consensus 614 ~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEE 693 (753)
+.=+.+|=....+-..+-+..+..+++++.++..+....+..|-.-.+....+.-+-.++....+++..-+..-..+.||
T Consensus 37 in~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee 116 (151)
T PF11559_consen 37 INCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEE 116 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555667778888888999999999999999999988888888887777777777777777666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 004449 694 LVTEKRKVVQLLQEL 708 (753)
Q Consensus 694 La~EK~Kl~~l~qel 708 (753)
+..-+..+.++....
T Consensus 117 ~~klk~~~~~~~tq~ 131 (151)
T PF11559_consen 117 LQKLKNQLQQRKTQY 131 (151)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666665555554433
No 388
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=36.96 E-value=1.3e+02 Score=30.76 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=29.3
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004449 676 TQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNET 725 (753)
Q Consensus 676 ~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~ 725 (753)
.+.|.+.+.+++..-+.|+..-+..+..++.++++++...+++....+..
T Consensus 38 ~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (265)
T TIGR00999 38 TYEREKKLFEQGVIPRQEFESAEYALEEAQAEVQAAKSELRSAREAKDGS 87 (265)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCC
Confidence 34444444455555566777777777777777766666555554444433
No 389
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=36.79 E-value=29 Score=29.77 Aligned_cols=53 Identities=30% Similarity=0.527 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-----c-CCccccCcchhh
Q 004449 683 WEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNETALI-----S-DPWRYDYNACWF 741 (753)
Q Consensus 683 WEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~-----~-~~~~~~~~~~~~ 741 (753)
..++-..|++||..++-|+++.-.+| ++=.|..-..+.++ + +||+=|=..||.
T Consensus 4 ~~~~ve~Lr~el~~~RikvS~a~~~l------i~y~e~~~~~DP~l~g~~~~~NP~~~dk~~c~~ 62 (63)
T smart00224 4 LRKEVEQLRKELSRERIKVSKAAEEL------LAYCEQHAEEDPLLTGPPPSKNPFIEDKTSCWI 62 (63)
T ss_pred HHHHHHHHHHHHCCceehHHHHHHHH------HHHHHcCCCCCCCcCCCCCCCCCCCCCCCCcCc
Confidence 45667789999999999988775544 44455566667666 4 899998889996
No 390
>PRK10865 protein disaggregation chaperone; Provisional
Probab=36.78 E-value=4e+02 Score=33.33 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=12.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHH
Q 004449 638 VRRLEVENTALRQEMEAAKLR 658 (753)
Q Consensus 638 vrrLE~EnA~lR~EmEAaKL~ 658 (753)
+.+||.++..|+.|+++++..
T Consensus 412 L~rLer~l~~L~~E~e~l~~e 432 (857)
T PRK10865 412 LDRLDRRIIQLKLEQQALMKE 432 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 355666666666666666443
No 391
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=36.61 E-value=72 Score=27.38 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 616 rLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
|+.|+||.|.+.+.. +--++.||.+||.+.|.-+
T Consensus 1 Ri~elEn~~~~~~~~-------i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 1 RIDELENELPRIESS-------INTVKKENEEISESVEKIE 34 (55)
T ss_pred CHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 788999999888774 5567778888888877544
No 392
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=36.43 E-value=2.8e+02 Score=30.64 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHH
Q 004449 682 SWEKQKALFQEE 693 (753)
Q Consensus 682 sWEkQK~lLQEE 693 (753)
.|..+...|.+.
T Consensus 295 RW~~~~~~l~~~ 306 (344)
T PF12777_consen 295 RWSEQIEELEEQ 306 (344)
T ss_dssp CCHCHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 355544444433
No 393
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=36.30 E-value=3.4e+02 Score=24.75 Aligned_cols=67 Identities=21% Similarity=0.291 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 004449 661 ESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEK----------RKVVQLLQELDQAKALQEQLEEMSNETAL 727 (753)
Q Consensus 661 ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK----------~Kl~~l~qel~qak~~q~q~E~~~~~~~~ 727 (753)
.......++-.+-++.+.++..+..++..+..+|+.-+ ..+..+.+++...+...+++|..+.+.++
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555555555554444433 34555555555566666666666655443
No 394
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=36.04 E-value=7.1e+02 Score=28.41 Aligned_cols=26 Identities=12% Similarity=0.396 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHHH
Q 004449 568 TEWANQKVMQAARRLSKDKAELKTLR 593 (753)
Q Consensus 568 tdWAnqKvMQAarRL~kdk~ELksLR 593 (753)
.+|-++.+-++-.+|..-..+|...|
T Consensus 163 ~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 163 QRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333444433
No 395
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=35.88 E-value=5.2e+02 Score=26.85 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=23.9
Q ss_pred hhhhHHHHHHHHHHhhhhhHhhhh--------HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 004449 613 TMKKLSEMENALCKASGQVERANS--------AVRRLEVENTALRQEMEAAKLRAAESAA 664 (753)
Q Consensus 613 T~KrLsEmEnAL~kasgQlerAns--------~vrrLE~EnA~lR~EmEAaKL~A~ES~~ 664 (753)
+-++|-+.+..|-++..++.+=.- ..-+|..+.+.+..+|+.+.-...+-..
T Consensus 87 ~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 87 LERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443211 1234555555555555555544444333
No 396
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=35.77 E-value=3.2e+02 Score=27.74 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=38.1
Q ss_pred hHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q 004449 631 VERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQ 686 (753)
Q Consensus 631 lerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQ 686 (753)
++++.-.+.||-....+|..|+-..+++..+....-+.-+-+=-..|.+.+-||+.
T Consensus 65 ~~~~~~laEkL~~Q~~AL~r~l~t~~lr~~~~~~~~~~~~~~Lyq~L~~hqe~erR 120 (173)
T PF07445_consen 65 LQQVAFLAEKLVAQIEALQRELATQSLRKKESKPSSRKPIHQLYQRLAQHQEYERR 120 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccCCccccccCchhHHHHHHHHHHHHHHH
Confidence 36677788999999999999999999988887771111112223445556666653
No 397
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=35.50 E-value=5.2e+02 Score=26.71 Aligned_cols=147 Identities=20% Similarity=0.253 Sum_probs=88.1
Q ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHH-HHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 004449 548 EIILKLIPRVRELHNQLHEWTEWANQKVMQ-AARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCK 626 (753)
Q Consensus 548 EmilkLv~rv~eLq~qlqewtdWAnqKvMQ-AarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~k 626 (753)
+.+..+.-+.+.++++++...+|.+.-+++ --.++-.|+..+..+.++.+. |....-+.-.|+.+|+-+.=+|
T Consensus 58 ~~L~~~s~~~r~i~~~~~~~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~k------e~k~~~~~l~K~~se~~Kl~KK 131 (219)
T PF08397_consen 58 DALMQISEVHRRIENELEEVFKAFHSELIQPLEKKLEEDKKYITQLEKDYEK------EYKRKRDELKKAESELKKLRKK 131 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhc
Confidence 567889999999999999999999998884 556777888888777666542 2222222233445555444455
Q ss_pred hhh-hh---HhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004449 627 ASG-QV---ERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVV 702 (753)
Q Consensus 627 asg-Ql---erAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~ 702 (753)
+.+ .- -.....++.+..+.+ |||.. -..+|.+++.-|++--=-| -+++..+++.|+.-.-.-+.
T Consensus 132 ~~kgk~~~~~~~~~~~~~v~~~~~----ele~~------~~~~~r~al~EERrRyc~l--v~~~~~~~~~~~~~~~~~~~ 199 (219)
T PF08397_consen 132 SRKGKDDQKYELKEALQDVTERQS----ELEEF------EKQSLREALLEERRRYCFL--VEKHCSVVKSELAFHNEAVE 199 (219)
T ss_dssp CCCCTSCHHHHHHHHHHHHHHHHH----HHHHH------HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccccHHHHHHHHHHHHHHH----HHHHH------HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 543 10 111122333333333 33321 1245666666666544333 47888888888877666566
Q ss_pred HHHHHHHHHH
Q 004449 703 QLLQELDQAK 712 (753)
Q Consensus 703 ~l~qel~qak 712 (753)
-|++.+..-.
T Consensus 200 ~L~~~~~~w~ 209 (219)
T PF08397_consen 200 HLQEKLDDWQ 209 (219)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhHHHH
Confidence 6666665443
No 398
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=35.44 E-value=5.6e+02 Score=27.09 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=12.6
Q ss_pred HHhHHHHHHHHHHHHhhH
Q 004449 552 KLIPRVRELHNQLHEWTE 569 (753)
Q Consensus 552 kLv~rv~eLq~qlqewtd 569 (753)
+|+..|.||+..=+.-.|
T Consensus 5 dL~~~v~dL~~~n~~L~~ 22 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLAD 22 (193)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 688889999876544433
No 399
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=35.35 E-value=6.6e+02 Score=27.91 Aligned_cols=99 Identities=21% Similarity=0.239 Sum_probs=69.5
Q ss_pred HHHHHHhHHHHHHHHHHHHhhHHHH-------HHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhh-hhhhhhHHH
Q 004449 548 EIILKLIPRVRELHNQLHEWTEWAN-------QKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILE-ENTMKKLSE 619 (753)
Q Consensus 548 EmilkLv~rv~eLq~qlqewtdWAn-------qKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lE-e~T~KrLsE 619 (753)
++-+++.++..+++.+|.|+.+=-. --+.|+-.|+-+-.++-+-|++|.|-+ ||||.-- .---+-.+-
T Consensus 20 ~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~----Kek~e~q~~q~y~q~s~ 95 (333)
T KOG1853|consen 20 LLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERN----KEKQEDQRVQFYQQESQ 95 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 5677788888888888887765432 234566677777777777777776544 3333211 114467788
Q ss_pred HHHHHHHhhhhhHhhhhHHHHHHHhhHHHHH
Q 004449 620 MENALCKASGQVERANSAVRRLEVENTALRQ 650 (753)
Q Consensus 620 mEnAL~kasgQlerAns~vrrLE~EnA~lR~ 650 (753)
+|..|..+-.+-|.-.--||+||.-|--|..
T Consensus 96 Leddlsqt~aikeql~kyiReLEQaNDdLEr 126 (333)
T KOG1853|consen 96 LEDDLSQTHAIKEQLRKYIRELEQANDDLER 126 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 8888888888999999999999988887644
No 400
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=35.25 E-value=7e+02 Score=28.13 Aligned_cols=128 Identities=23% Similarity=0.334 Sum_probs=75.9
Q ss_pred HHHHHHhHHHH-HHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhh-hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004449 589 LKTLRQEKEEV-ERLKKEKQILEENTMKKLSEMENALCKASGQVERA-NSAVRRLEVENTALRQEMEAAKLRAAESAASC 666 (753)
Q Consensus 589 LksLR~EkEE~-erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerA-ns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc 666 (753)
|..|.+|||.. -.+.+|-..|=..=++||..+-..-...-++|++= ..-|-+|-..+..|++|+.+ | ..+
T Consensus 86 l~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~-~-------q~~ 157 (310)
T PF09755_consen 86 LQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSA-K-------QEE 157 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-h-------HHH
Confidence 34445555554 34444444444455677776666555555555552 24456666666655555422 1 123
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhcccccCCccccCcch
Q 004449 667 QEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKV-VQLLQELDQAKALQEQLEEMSNETALISDPWRYDYNAC 739 (753)
Q Consensus 667 ~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl-~~l~qel~qak~~q~q~E~~~~~~~~~~~~~~~~~~~~ 739 (753)
.+-+++ +|.-|.--|..|..-| -.|++.+.+...-+..++.++.+. +|+|.-|+-..|
T Consensus 158 le~Lr~-------------EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~--~s~~~s~~d~~~ 216 (310)
T PF09755_consen 158 LERLRR-------------EKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQP--VSAPPSPRDTVN 216 (310)
T ss_pred HHHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCCCcchHHh
Confidence 333333 5555555555555544 468889999999999999998885 678887775554
No 401
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=35.17 E-value=93 Score=31.53 Aligned_cols=94 Identities=15% Similarity=0.217 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q 004449 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (753)
Q Consensus 617 LsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~ 696 (753)
|.++-..-.-...||-.++..+++|+.++.+....+...+-....-.+-|... -..+.-.++--..||+|+.+
T Consensus 83 Lael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l-------~~~l~ek~k~~e~l~DE~~~ 155 (194)
T PF08614_consen 83 LAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDL-------EEELKEKNKANEILQDELQA 155 (194)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444455566666666666666655555444333332222222222 12344444455566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004449 697 EKRKVVQLLQELDQAKALQEQ 717 (753)
Q Consensus 697 EK~Kl~~l~qel~qak~~q~q 717 (753)
-.--+..+.+.+.+.++--++
T Consensus 156 L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 156 LQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 665555555555555444333
No 402
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=34.97 E-value=3.2e+02 Score=24.13 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=28.3
Q ss_pred HHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004449 620 MENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAES 662 (753)
Q Consensus 620 mEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES 662 (753)
||-.+.--...+|++..-+...+.+|..|+.|.+.+=-+..+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a 45 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDA 45 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566777777777777778888888777665555443
No 403
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=34.96 E-value=4.1e+02 Score=25.39 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=5.8
Q ss_pred HHHHHhHHHHH
Q 004449 671 KREKKTQMKFQ 681 (753)
Q Consensus 671 krekk~lkk~q 681 (753)
.++.|.+.+|.
T Consensus 105 ~~~~k~lEkL~ 115 (147)
T PRK05689 105 KQRLEALETLQ 115 (147)
T ss_pred HHHHHHHHHHH
Confidence 45555555553
No 404
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=34.77 E-value=3.6e+02 Score=24.59 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=23.0
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHH
Q 004449 589 LKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAV 638 (753)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~v 638 (753)
++-+|...|.+..--+-+. .......++-++....+++..++|..++.-
T Consensus 4 ik~ir~n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr~~r 52 (108)
T PF02403_consen 4 IKLIRENPEEVRENLKKRG-GDEEDVDEIIELDQERRELQQELEELRAER 52 (108)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544333332 233344555555555555555444444433
No 405
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=34.67 E-value=59 Score=25.51 Aligned_cols=33 Identities=9% Similarity=-0.006 Sum_probs=24.0
Q ss_pred HHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhcc
Q 004449 215 VCVLREVRPFFSTGDAMWCLLICDMNVSHACAMD 248 (753)
Q Consensus 215 VafLrs~fP~LS~~DAmwyLLlADaDLl~A~am~ 248 (753)
|.-++.+. ..+...|+.||-.++-||..|+..-
T Consensus 4 i~~F~~iT-g~~~~~A~~~L~~~~wdle~Av~~y 36 (43)
T PF14555_consen 4 IAQFMSIT-GADEDVAIQYLEANNWDLEAAVNAY 36 (43)
T ss_dssp HHHHHHHH--SSHHHHHHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHHH-CcCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33334444 3588999999999999999999864
No 406
>PLN02678 seryl-tRNA synthetase
Probab=34.60 E-value=3.3e+02 Score=31.80 Aligned_cols=47 Identities=4% Similarity=0.176 Sum_probs=22.8
Q ss_pred HHHHHH----hHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhh
Q 004449 589 LKTLRQ----EKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANS 636 (753)
Q Consensus 589 LksLR~----EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns 636 (753)
++-+|. ..|++.+--+-+. +..+..-+|.++....++...++|..++
T Consensus 4 ~k~ir~~~~~~~~~v~~~l~~R~-~~~~~id~il~ld~~~r~l~~~~e~lr~ 54 (448)
T PLN02678 4 INLFREEKGGDPELIRESQRRRF-ASVELVDEVIALDKEWRQRQFELDSLRK 54 (448)
T ss_pred HHHHhcccccCHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466774 4444433333232 2222355666666666666555544433
No 407
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=34.43 E-value=1.3e+02 Score=33.89 Aligned_cols=47 Identities=11% Similarity=0.234 Sum_probs=29.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 678 MKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 678 kk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
.++...|..-..|++.+..-.+.+..+.+++.+.+...+.+|.+++-
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRR 190 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34555565566666666666666666666666666666666666654
No 408
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=34.39 E-value=2.1e+02 Score=26.74 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=26.1
Q ss_pred hhhhHHHHHHHHHHh--hhhhHhhhhHHHHHHHhhHHHHHHHH
Q 004449 613 TMKKLSEMENALCKA--SGQVERANSAVRRLEVENTALRQEME 653 (753)
Q Consensus 613 T~KrLsEmEnAL~ka--sgQlerAns~vrrLE~EnA~lR~EmE 653 (753)
.-.||+.+|..++.- ..+|-+-+-.+-+++++...++++++
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 467889999888887 66555555555555555555554443
No 409
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=34.38 E-value=2e+02 Score=24.70 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 685 KQKALFQEELVTEKRKVVQLLQELDQ 710 (753)
Q Consensus 685 kQK~lLQEELa~EK~Kl~~l~qel~q 710 (753)
.+|..++..|...|..+..|.++|.+
T Consensus 54 s~r~~~~~kl~~yr~~l~~lk~~l~~ 79 (79)
T PF05008_consen 54 SERNQYKSKLRSYRSELKKLKKELKK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46677777888888888888777754
No 410
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=34.19 E-value=4.3e+02 Score=26.33 Aligned_cols=35 Identities=31% Similarity=0.258 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 685 KQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (753)
Q Consensus 685 kQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E 719 (753)
.|-+-|+.+.....+--++|.++++++...-.+.|
T Consensus 47 ~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re 81 (135)
T TIGR03495 47 NQLIVLLALAKRNEEAQAQLRQQLAQARALLAQRE 81 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555554444433333
No 411
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=34.04 E-value=4.5e+02 Score=25.50 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 004449 619 EMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRA 659 (753)
Q Consensus 619 EmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A 659 (753)
++++++..-.+|-+..+..+..|+.+++++++.+|.-|+.-
T Consensus 41 ~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak 81 (107)
T PF09304_consen 41 QLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAK 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999877653
No 412
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=34.02 E-value=4.7e+02 Score=27.88 Aligned_cols=99 Identities=25% Similarity=0.300 Sum_probs=70.7
Q ss_pred hcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHH----H
Q 004449 584 KDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR----A 659 (753)
Q Consensus 584 kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~----A 659 (753)
.-..|+.+|++.++.-+++...-|.+...+-.++++++.....+..++..+... +.++++.+..||++.-=. +
T Consensus 72 ~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~---l~~~~~k~~~~l~~l~~~v~~l~ 148 (256)
T PF14932_consen 72 ALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKE---LSAECSKLNNELNQLLGEVSKLA 148 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566677777777777777888888889999999999998888888877665 777777777777764311 2
Q ss_pred HHHHH----------------HHHHHHHHHHHhHHHHHhHHH
Q 004449 660 AESAA----------------SCQEVSKREKKTQMKFQSWEK 685 (753)
Q Consensus 660 ~ES~~----------------sc~Ev~krekk~lkk~qsWEk 685 (753)
.+.+. .+-.-...+..+.+-|-.|=|
T Consensus 149 ~~~~~~~~~~~~~~~~flsq~~l~~Y~~~ee~~t~~L~~y~k 190 (256)
T PF14932_consen 149 SELAHAHSGQQQNPPVFLSQMPLEQYLSQEEQFTKYLTSYTK 190 (256)
T ss_pred HHHHHhcccccCCCCchhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 22222 234567788888888888866
No 413
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=33.76 E-value=5.5e+02 Score=30.08 Aligned_cols=103 Identities=16% Similarity=0.293 Sum_probs=69.9
Q ss_pred HHHhHHHHHHHHHHH-----HhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 004449 551 LKLIPRVRELHNQLH-----EWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALC 625 (753)
Q Consensus 551 lkLv~rv~eLq~qlq-----ewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~ 625 (753)
-.|+..-.++=|+|- +-..+|.+-|-+|-.||.+-+..|-.+|.+.--+.=.+ ==+..+.-+..+|..|-
T Consensus 222 ~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~-----~a~~~~~lI~~Le~qLa 296 (434)
T PRK15178 222 QRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKE-----TITAIYQLIAGFETQLA 296 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHH-----HHHHHHHHHHHHHHHHH
Confidence 334444444444443 34568889999999999988888888887664332110 02346677888888887
Q ss_pred HhhhhhHhh-------hhHHHHHHHhhHHHHHHHHH--HHHH
Q 004449 626 KASGQVERA-------NSAVRRLEVENTALRQEMEA--AKLR 658 (753)
Q Consensus 626 kasgQlerA-------ns~vrrLE~EnA~lR~EmEA--aKL~ 658 (753)
++..||+.. +-.|..|+.+++.|+++++. +|+-
T Consensus 297 ~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 297 EAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 777777733 56788999999999998865 4443
No 414
>PLN02678 seryl-tRNA synthetase
Probab=33.70 E-value=2.8e+02 Score=32.27 Aligned_cols=31 Identities=10% Similarity=0.064 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 004449 697 EKRKVVQLLQELDQAKALQEQLEEMSNETAL 727 (753)
Q Consensus 697 EK~Kl~~l~qel~qak~~q~q~E~~~~~~~~ 727 (753)
-+.++.+|.+++...+...+++|.++.+.++
T Consensus 76 l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~ 106 (448)
T PLN02678 76 LIAETKELKKEITEKEAEVQEAKAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666666666666665543
No 415
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=33.59 E-value=5.5e+02 Score=26.44 Aligned_cols=38 Identities=29% Similarity=0.486 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHhhhhhHhh-----hhHHHHHHHhhHHHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERA-----NSAVRRLEVENTALRQEME 653 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerA-----ns~vrrLE~EnA~lR~EmE 653 (753)
+|+.||-.-+++|-. +|.- .-.+.+|+.||..||.-..
T Consensus 135 ~kI~EM~~vM~~ai~-~de~~~~~~qe~i~qL~~EN~~LRelL~ 177 (181)
T PF05769_consen 135 EKICEMAAVMRKAIE-LDEENSQEEQEIIAQLETENKGLRELLQ 177 (181)
T ss_pred HHHHHHHHHHHHHHh-cchhhhHhHHHHHHHHHHHHHHHHHHHh
Confidence 566666666666542 2222 2455666666666665443
No 416
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=33.53 E-value=2.8e+02 Score=31.65 Aligned_cols=27 Identities=19% Similarity=0.508 Sum_probs=16.4
Q ss_pred HHHHHHHhhccccccCCcc-hhHHHHHH
Q 004449 156 EVATKAVLRSGLCYGSKDT-VSNIVDNT 182 (753)
Q Consensus 156 ~~~~rALL~AGhCYGplDP-VSNII~NT 182 (753)
..+...|...|..||..+. +..++...
T Consensus 28 ~~i~~~L~~~gi~~Gi~~~~i~~~~~~~ 55 (451)
T PF03961_consen 28 EEILEALRKKGIVYGIDEEAIDKAIESP 55 (451)
T ss_pred HHHHHHHHHCCCCcccCHHHHHHHHhcc
Confidence 3466677777888887533 55554443
No 417
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=33.51 E-value=1.8e+02 Score=29.60 Aligned_cols=40 Identities=23% Similarity=0.416 Sum_probs=25.0
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhhh---hhhhHHHHHHHHHHhh
Q 004449 589 LKTLRQEKEEVERLKKEKQILEEN---TMKKLSEMENALCKAS 628 (753)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lEe~---T~KrLsEmEnAL~kas 628 (753)
|..-+.=...+++|+++-..|++- +++.|.++++.|..+-
T Consensus 21 l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 21 LQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445555555555554 6789999999998886
No 418
>PF13166 AAA_13: AAA domain
Probab=33.37 E-value=9e+02 Score=28.82 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=20.4
Q ss_pred HHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 621 ENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 621 EnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
...+......++..|+.++....+...+..+.+.++
T Consensus 362 ~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~ 397 (712)
T PF13166_consen 362 NEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELK 397 (712)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666666666665555555555444
No 419
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=33.35 E-value=96 Score=28.70 Aligned_cols=40 Identities=30% Similarity=0.389 Sum_probs=34.0
Q ss_pred HHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004449 623 ALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAES 662 (753)
Q Consensus 623 AL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES 662 (753)
-+.+-+.||+..|+.|..++.+...+|..-++||-.|.+.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RA 64 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRA 64 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999999877654
No 420
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=33.21 E-value=1e+02 Score=36.45 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=42.7
Q ss_pred HhHHHHHhHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 004449 675 KTQMKFQSWEKQKALFQEELVTE-----K-RKVVQLLQELDQAKALQEQLEEMSNETA 726 (753)
Q Consensus 675 k~lkk~qsWEkQK~lLQEELa~E-----K-~Kl~~l~qel~qak~~q~q~E~~~~~~~ 726 (753)
+.-+++..+|.++..|++++++- . .++.++.++++++++..++.+++|-|..
T Consensus 572 ~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 629 (635)
T PRK11147 572 QLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELE 629 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888998888888753 1 2899999999999999999999998754
No 421
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=33.03 E-value=7.4e+02 Score=27.78 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 691 QEELVTEKRKVVQLLQELDQAKALQE 716 (753)
Q Consensus 691 QEELa~EK~Kl~~l~qel~qak~~q~ 716 (753)
++++..-+..+.+++.++++++...+
T Consensus 226 ~~~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 226 EKELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777777777777776665543
No 422
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=32.95 E-value=8.8e+02 Score=28.60 Aligned_cols=33 Identities=24% Similarity=0.179 Sum_probs=17.3
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHh
Q 004449 563 QLHEWTEWANQKVMQAARRLSKDKAELKTLRQE 595 (753)
Q Consensus 563 qlqewtdWAnqKvMQAarRL~kdk~ELksLR~E 595 (753)
+..+++.=+|.+.-|-.++-+.=.+++-.||.|
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~ 42 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILRAE 42 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555544
No 423
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=32.71 E-value=5.5e+02 Score=26.14 Aligned_cols=114 Identities=16% Similarity=0.237 Sum_probs=72.6
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHH
Q 004449 609 LEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEM-EAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQK 687 (753)
Q Consensus 609 lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~Em-EAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK 687 (753)
.=|++++-+..+.+.|.....+|...-..|-+||..--..|..+ |.+|=-..=|..-..++-.+-+..+.++..+..+-
T Consensus 21 I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E 100 (159)
T PF05384_consen 21 IAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLRERE 100 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777777777777777777777776554444432 33332222233334555555566667777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004449 688 ALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMS 722 (753)
Q Consensus 688 ~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~ 722 (753)
.-|+.---.-...|.++..-+++|..+-.|+-..+
T Consensus 101 ~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl 135 (159)
T PF05384_consen 101 KQLRERRDELERRLRNLEETIERAENLVSQIGVVL 135 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666777777777777777777665543
No 424
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=32.69 E-value=7.4e+02 Score=28.08 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 694 LVTEKRKVVQLLQELDQAKALQEQL 718 (753)
Q Consensus 694 La~EK~Kl~~l~qel~qak~~q~q~ 718 (753)
|-.-|.||-+||+.|..++...+.+
T Consensus 189 LNeKK~KIR~lq~~L~~~~~~~~~~ 213 (342)
T PF06632_consen 189 LNEKKAKIRELQRLLASAKEEEKSP 213 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhhccccch
Confidence 3456899999999999998765543
No 425
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=32.55 E-value=3.9e+02 Score=27.86 Aligned_cols=69 Identities=26% Similarity=0.294 Sum_probs=27.8
Q ss_pred HHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 638 VRRLEVENTALRQEMEAAKL----RAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQ 706 (753)
Q Consensus 638 vrrLE~EnA~lR~EmEAaKL----~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~q 706 (753)
..+||.+.+.+|++++.--. +-.+.......+-++=+..+.|-.--|.--..|..||...|++..++++
T Consensus 145 ~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 145 LKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444445555554443321 1222222222333333333444444444444444444444444444433
No 426
>PLN02829 Probable galacturonosyltransferase
Probab=32.15 E-value=3.8e+02 Score=32.82 Aligned_cols=81 Identities=20% Similarity=0.246 Sum_probs=57.1
Q ss_pred HhhhcHHHHHHHHHhHHHHHHHHHHHhh---hhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHH
Q 004449 581 RLSKDKAELKTLRQEKEEVERLKKEKQI---LEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKL 657 (753)
Q Consensus 581 RL~kdk~ELksLR~EkEE~erlkKeKq~---lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL 657 (753)
++..-..-.+.||+-..|.||.=-|--. |-.+..+|+..||..|.+|.....-.++-++||..-.-....|+.++|.
T Consensus 203 k~~~~~~l~~el~~~i~e~~r~l~~a~~d~~lp~~~~~~~~~m~~~i~~ak~~~~d~~~~~~KLr~~l~~~Ee~~~~~~~ 282 (639)
T PLN02829 203 ATKANPHFTRELRLRIKEVQRVLGDASKDSDLPKNANEKLKAMEQTLAKGKQMQDDCSIVVKKLRAMLHSAEEQLRVHKK 282 (639)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444556777777777776221111 1113458999999999999998777888899999888888888888887
Q ss_pred HHHH
Q 004449 658 RAAE 661 (753)
Q Consensus 658 ~A~E 661 (753)
+++-
T Consensus 283 q~~~ 286 (639)
T PLN02829 283 QTMF 286 (639)
T ss_pred HHHH
Confidence 6543
No 427
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.09 E-value=5.4e+02 Score=30.27 Aligned_cols=96 Identities=19% Similarity=0.284 Sum_probs=56.7
Q ss_pred chhHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 004449 545 KRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENAL 624 (753)
Q Consensus 545 ~KDEmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL 624 (753)
.++|-++....+..+|+.|.. -++.=.-....+-.-..-|-.+.+|++...+-.+.+++.+...| |++-+
T Consensus 303 d~~Et~~v~lke~~~Le~q~e-----~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r~~E~v~~~-----md~~~ 372 (446)
T KOG4438|consen 303 DSLETKVVELKEILELEDQIE-----LNQLELEKLKMFENLTKQLNELKKEKESRRQDLENRKTESVKAM-----MDDNI 372 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----HHHHH
Confidence 357888888899999988875 23322223332222333344555666666666666666444444 33333
Q ss_pred HHhhhhhHhhhhHHHHHHHhhHHHHH
Q 004449 625 CKASGQVERANSAVRRLEVENTALRQ 650 (753)
Q Consensus 625 ~kasgQlerAns~vrrLE~EnA~lR~ 650 (753)
.+..-==+.-|+.+.++|.+|.++..
T Consensus 373 ~~~n~V~~kr~a~~~kie~~~~~ik~ 398 (446)
T KOG4438|consen 373 EKYNVVRQKRNAKVKKIEEKNEEIKK 398 (446)
T ss_pred HHhcccchhhccHHHHHHHHHHHHHH
Confidence 33333335668888899988887764
No 428
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=32.03 E-value=7.7e+02 Score=27.63 Aligned_cols=18 Identities=44% Similarity=0.551 Sum_probs=12.6
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 004449 639 RRLEVENTALRQEMEAAK 656 (753)
Q Consensus 639 rrLE~EnA~lR~EmEAaK 656 (753)
++|-.+++.|+.+.++++
T Consensus 134 ~~lvq~I~~L~k~le~~~ 151 (294)
T COG1340 134 RELVQKIKELRKELEDAK 151 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344456777888888877
No 429
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=32.00 E-value=1.6e+02 Score=32.51 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=10.0
Q ss_pred HHhHHHHHHHHHHHHhhH
Q 004449 552 KLIPRVRELHNQLHEWTE 569 (753)
Q Consensus 552 kLv~rv~eLq~qlqewtd 569 (753)
.|-.+..++..+++.+.|
T Consensus 3 el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 3 ELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 445555555555555555
No 430
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=31.95 E-value=5.2e+02 Score=28.80 Aligned_cols=85 Identities=25% Similarity=0.370 Sum_probs=60.7
Q ss_pred HHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhh
Q 004449 552 KLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQV 631 (753)
Q Consensus 552 kLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQl 631 (753)
+|=+.+.|++..+ .|+|..---|=+||+-|. =+++-||..-..|||. |.++...++...+++
T Consensus 81 ~lk~~l~evEeky--------rkAMv~naQLDNek~~l~------yqvd~Lkd~lee~eE~----~~~~~re~~eK~~el 142 (302)
T PF09738_consen 81 DLKDSLAEVEEKY--------RKAMVSNAQLDNEKSALM------YQVDLLKDKLEELEET----LAQLQREYREKIREL 142 (302)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHhhhchHHHHHH------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3345566666655 589999999999998763 2344444444444544 556666667778888
Q ss_pred HhhhhHHHHHHHhhHHHHHHHHH
Q 004449 632 ERANSAVRRLEVENTALRQEMEA 654 (753)
Q Consensus 632 erAns~vrrLE~EnA~lR~EmEA 654 (753)
+|-.-....|..|.++||.++..
T Consensus 143 Er~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 143 ERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888999999999999988853
No 431
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=31.87 E-value=2.6e+02 Score=27.40 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=21.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 680 FQSWEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (753)
Q Consensus 680 ~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~ 714 (753)
+..-.+|..+||+|+..+..-+..-.+.|.+.++-
T Consensus 36 L~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~ 70 (160)
T PF13094_consen 36 LAANLHQLELLQEEIEKEEAALERDYEYLQELEKN 70 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677788888777766665555555544443
No 432
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=31.74 E-value=1e+02 Score=29.17 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Q 004449 558 RELHNQLHEWTEWANQKVMQAARRL 582 (753)
Q Consensus 558 ~eLq~qlqewtdWAnqKvMQAarRL 582 (753)
.|++.++..|-+|.+++++-...+.
T Consensus 2 ~~~~a~i~~~~~~~~~~~~~~~~~~ 26 (142)
T cd03190 2 EELRSEIDELNEWIYDNINNGVYKA 26 (142)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4789999999999999999887664
No 433
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=31.73 E-value=5.9e+02 Score=26.23 Aligned_cols=83 Identities=19% Similarity=0.312 Sum_probs=40.7
Q ss_pred hhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004449 629 GQVERANSAVRRLEVENTALRQEMEAAKLRAAE-----SAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQ 703 (753)
Q Consensus 629 gQlerAns~vrrLE~EnA~lR~EmEAaKL~A~E-----S~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~ 703 (753)
..+-+=|.-++.|..||.+||.=.|-=.- |.| .-..|..+....+.... ..--.--..+++++.....||.+
T Consensus 63 ~~l~~En~qi~~Lq~EN~eL~~~leEhq~-alelIM~KyReq~~~l~~~~k~~~~--~~~~~~~~~~~~~~~~~~~kI~E 139 (181)
T PF05769_consen 63 AGLQQENRQIRQLQQENRELRQSLEEHQS-ALELIMSKYREQMSQLMMASKFDDT--EPYLEANEQLSKEVQSQAEKICE 139 (181)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhh--hHHHHHHHHHHHHHhhHHHHHHH
Confidence 45555577789999999999874442110 000 00122222211111110 00001112467777777777777
Q ss_pred HHHHHHHHHHH
Q 004449 704 LLQELDQAKAL 714 (753)
Q Consensus 704 l~qel~qak~~ 714 (753)
...-+..|=..
T Consensus 140 M~~vM~~ai~~ 150 (181)
T PF05769_consen 140 MAAVMRKAIEL 150 (181)
T ss_pred HHHHHHHHHhc
Confidence 76666555443
No 434
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=31.71 E-value=2.9e+02 Score=33.65 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q 004449 612 NTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQ 691 (753)
Q Consensus 612 ~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQ 691 (753)
+.|+-|.||-+-+...+-+|-.-.+.-|+|..|+++++.-.|+ ||
T Consensus 76 s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEe-----------------------------------lk 120 (907)
T KOG2264|consen 76 SIGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEE-----------------------------------LK 120 (907)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------------------------------HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 692 EELVTEKRKVVQLLQELDQAKALQEQL 718 (753)
Q Consensus 692 EELa~EK~Kl~~l~qel~qak~~q~q~ 718 (753)
.+|-.++..|.+|.-+++||..+++++
T Consensus 121 ~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 121 RLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHHH
No 435
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=31.60 E-value=2.6e+02 Score=33.44 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=20.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (753)
Q Consensus 679 k~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~ 713 (753)
.++.-..+-..|+.|+.+.|.++..+.++|.+.++
T Consensus 213 ~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~ 247 (555)
T TIGR03545 213 ELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKK 247 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444446666667777777777666666555443
No 436
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.52 E-value=1.7e+02 Score=27.45 Aligned_cols=54 Identities=26% Similarity=0.261 Sum_probs=39.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCC
Q 004449 678 MKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNETALISDP 731 (753)
Q Consensus 678 kk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~~~~ 731 (753)
.+....+.|..-+++|++.-+++..+|.++++..+.-.+=+|..-|+..-...|
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~ 80 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKP 80 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCC
Confidence 344555677777888888888888888888888777556778778876655444
No 437
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=31.26 E-value=2.3e+02 Score=32.24 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=19.0
Q ss_pred HHHhHHHHHHHHHHHHhhHHHHHHH
Q 004449 551 LKLIPRVRELHNQLHEWTEWANQKV 575 (753)
Q Consensus 551 lkLv~rv~eLq~qlqewtdWAnqKv 575 (753)
-.+..|..+|+.+|.+-.=|.+++-
T Consensus 26 ~~~~~~~~~l~~~l~~p~~~~d~~~ 50 (367)
T PRK00578 26 DALKERLEELEAEAEDPDFWNDQER 50 (367)
T ss_pred HHHHHHHHHHHHHhcCCccccCHHH
Confidence 3567788899999988777877644
No 438
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.21 E-value=5.6e+02 Score=28.82 Aligned_cols=34 Identities=15% Similarity=0.456 Sum_probs=22.0
Q ss_pred CchhHHHHHHhHHH--HHHHHHHHHhhHHHHHHHHHH
Q 004449 544 DKRDEIILKLIPRV--RELHNQLHEWTEWANQKVMQA 578 (753)
Q Consensus 544 D~KDEmilkLv~rv--~eLq~qlqewtdWAnqKvMQA 578 (753)
.+.++||..||.-+ .+.+.+|+.|.. .|+..++.
T Consensus 100 E~vEdii~nL~~~~d~~~te~~l~~y~~-~n~~~I~~ 135 (309)
T TIGR00570 100 EEVEDIVYNLTNNIDLENTKKKIETYQK-ENKDVIQK 135 (309)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHH-HhHHHHHH
Confidence 35789999999864 456677777655 34444443
No 439
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=31.07 E-value=3.7e+02 Score=26.43 Aligned_cols=83 Identities=20% Similarity=0.400 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHH--------hhhcHHHH--------HHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhh
Q 004449 567 WTEWANQKVMQAARR--------LSKDKAEL--------KTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQ 630 (753)
Q Consensus 567 wtdWAnqKvMQAarR--------L~kdk~EL--------ksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQ 630 (753)
|+-|.=-=+|=+||| ++|.+..+ +-|-+..+.+..--.+-..+-+.|++.+.|+-.-+....+.
T Consensus 25 wKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~d 104 (126)
T PF07889_consen 25 WKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDD 104 (126)
T ss_pred ecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred hHhhhhHHHHHHHhhHHHH
Q 004449 631 VERANSAVRRLEVENTALR 649 (753)
Q Consensus 631 lerAns~vrrLE~EnA~lR 649 (753)
|+.-+..|+-||.++.+|.
T Consensus 105 v~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 105 VDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHh
No 440
>PRK06991 ferredoxin; Provisional
Probab=31.07 E-value=1.8e+02 Score=31.66 Aligned_cols=33 Identities=15% Similarity=0.424 Sum_probs=20.4
Q ss_pred HHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHH
Q 004449 565 HEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERL 602 (753)
Q Consensus 565 qewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erl 602 (753)
..|..|..++.=++ +..-|.+..|.++|+.++.
T Consensus 142 ~~~~~~~~~~a~~a-----r~r~~~r~~Rl~~~~~~~~ 174 (270)
T PRK06991 142 TGWDAWSQAQADAA-----RARHDARQARLRREREAAE 174 (270)
T ss_pred hHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 67778865544333 5556666777777766654
No 441
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=30.90 E-value=3.4e+02 Score=30.79 Aligned_cols=69 Identities=28% Similarity=0.208 Sum_probs=50.7
Q ss_pred hhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhHHHHHhHHHHHHHHHHHHHHHH
Q 004449 630 QVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKRE---------KKTQMKFQSWEKQKALFQEELVTEK 698 (753)
Q Consensus 630 QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~kre---------kk~lkk~qsWEkQK~lLQEELa~EK 698 (753)
||..--.--|+||.|.-.|..--++-|..-.||..++++-+||- .|---.+.-||.|-.+-|||-..+.
T Consensus 229 Qv~SL~~HQ~KLEaEL~q~Ee~hq~kKrk~~estdsf~~eLKr~c~~kvevd~eK~~~~i~q~eeq~rkr~eE~~k~a 306 (410)
T KOG4715|consen 229 QVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKMAAEIAQAEEQARKRQEEREKEA 306 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHhHhHHHhhH
Confidence 44444445678888888888888888999999999999999883 3444455667777777777765443
No 442
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=30.76 E-value=2.4e+02 Score=26.66 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004449 683 WEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMS 722 (753)
Q Consensus 683 WEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~ 722 (753)
++.+...|++.+..-.+++.+|++-++..+......++++
T Consensus 78 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~~~ 117 (118)
T cd04776 78 LEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRERL 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555667777777777777777777777777766666653
No 443
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=30.60 E-value=4.1e+02 Score=32.08 Aligned_cols=92 Identities=23% Similarity=0.194 Sum_probs=66.9
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004449 599 VERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQM 678 (753)
Q Consensus 599 ~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lk 678 (753)
.++|.+|-+.||-.+...|-+-|.....-...+|.|.+.+-++|...+....++..-+=
T Consensus 7 ~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~--------------------- 65 (701)
T PF09763_consen 7 EERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRD--------------------- 65 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 46788888999999999999999999999999999999999999888888777765321
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (753)
Q Consensus 679 k~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qa 711 (753)
.+...|.|-..||-+.+-.|.=+.+|+.=|.+.
T Consensus 66 di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l 98 (701)
T PF09763_consen 66 DIEYIESQNNGLQVQSANQKLLLNELENLLDTL 98 (701)
T ss_pred HHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhc
Confidence 244555666666655555444444444444443
No 444
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=30.51 E-value=2.3e+02 Score=24.35 Aligned_cols=11 Identities=27% Similarity=0.280 Sum_probs=6.6
Q ss_pred HHHHHHHHHHh
Q 004449 617 LSEMENALCKA 627 (753)
Q Consensus 617 LsEmEnAL~ka 627 (753)
|..||..++.+
T Consensus 41 l~qMe~E~~~~ 51 (79)
T PF05008_consen 41 LKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHCTS
T ss_pred HHHHHHHHHhC
Confidence 55666666655
No 445
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=30.30 E-value=7.8e+02 Score=27.21 Aligned_cols=86 Identities=20% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q 004449 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKR------KVVQLLQELDQ 710 (753)
Q Consensus 637 ~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~------Kl~~l~qel~q 710 (753)
.|.-+-...+.|=-|+-.+--.=+.........+|--.+.=+.++--...|.+|++||+.-|. ||..|+|||..
T Consensus 97 dl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvr 176 (271)
T PF13805_consen 97 DLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVR 176 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhh
Q 004449 711 AKALQEQLEEMS 722 (753)
Q Consensus 711 ak~~q~q~E~~~ 722 (753)
++..---.|+.+
T Consensus 177 aEae~lvaEAqL 188 (271)
T PF13805_consen 177 AEAENLVAEAQL 188 (271)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhhHHHHHH
No 446
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=30.09 E-value=4.2e+02 Score=30.22 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=22.2
Q ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHH
Q 004449 548 EIILKLIPRVRELHNQLHEWTEWANQKVMQA 578 (753)
Q Consensus 548 EmilkLv~rv~eLq~qlqewtdWAnqKvMQA 578 (753)
+.+-.+..++.+|++++..-.=|-+++-.|.
T Consensus 6 ~~~e~~~~~~~~le~~~~~~~~w~d~~~~~~ 36 (359)
T PRK00591 6 DKLEALEERYEELEALLSDPEVISDQKRFRK 36 (359)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccCHHHHHH
Confidence 3455667788999999988888876654433
No 447
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=30.08 E-value=5.4e+02 Score=25.28 Aligned_cols=41 Identities=27% Similarity=0.268 Sum_probs=32.4
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 669 VSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (753)
Q Consensus 669 v~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~ 709 (753)
|-||-.=--+-+.+.|.|-.-+|+|....|.+|.++|+.-+
T Consensus 74 V~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q 114 (120)
T KOG3478|consen 74 VGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQ 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444455778899999999999999999999998754
No 448
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=29.99 E-value=1.1e+02 Score=27.93 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 689 LFQEELVTEKRKVVQLLQELDQAKALQEQLEE 720 (753)
Q Consensus 689 lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~ 720 (753)
++..||...|.||+++|..|.....+..+.|.
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788889999999999888877777776663
No 449
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=29.83 E-value=4.8e+02 Score=31.08 Aligned_cols=52 Identities=23% Similarity=0.306 Sum_probs=34.2
Q ss_pred HHhHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004449 674 KKTQMKFQSWEKQ-KALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNET 725 (753)
Q Consensus 674 kk~lkk~qsWEkQ-K~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~ 725 (753)
+++|.|....|.+ +.++|.-+..||.---.+||.|+--.++.+|+|.-+.+.
T Consensus 544 reslekql~~ErklR~~~qkr~kkEkk~k~k~qe~L~~~sk~reqaeqs~~~~ 596 (641)
T KOG3915|consen 544 RESLEKQLAMERKLRAIVQKRLKKEKKAKRKLQEALEFESKRREQAEQSLKQA 596 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhccccc
Confidence 3455566666654 566777777777666677777776667777777666554
No 450
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=29.60 E-value=8.1e+02 Score=27.13 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=49.6
Q ss_pred HHHHhHHHHHHHHHHH---------hhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHH---HHHHHH--H
Q 004449 591 TLRQEKEEVERLKKEK---------QILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALR---QEMEAA--K 656 (753)
Q Consensus 591 sLR~EkEE~erlkKeK---------q~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR---~EmEAa--K 656 (753)
.|.+|..|-++++..- ..+=.+-+.++..++.+|.+|+.==..-....+.-+.-...|. .+++++ +
T Consensus 98 ~Ld~E~~ed~~~R~k~g~~Wtr~pS~~~~~~l~~~~~kyr~~L~~A~~sD~~v~~k~~~~~~~l~lLs~~~~~l~~~lPs 177 (339)
T cd09235 98 MLDEEEASDNQLRAQFKERWTRTPSNKLTKPLRAEGSKYRTILDNAVQADKIVREKYESHREGIELLSKPEEELANAIPS 177 (339)
T ss_pred HHHhhhhHHHHHHHHhCCcCCCCChHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCHHHHHHhCCC
Confidence 4666666666665432 1223345578888888888776522222222222222223331 112111 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q 004449 657 LRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELV 695 (753)
Q Consensus 657 L~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa 695 (753)
...... .+--++..+-+..|+++...++|+..+.+||.
T Consensus 178 s~~~~~-~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~Lk 215 (339)
T cd09235 178 ASPAKT-LQGSEAVQELRQLMEQVETIKAEREVIESELK 215 (339)
T ss_pred CCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 01223445667777777777777777766663
No 451
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=29.59 E-value=7.6e+02 Score=26.81 Aligned_cols=114 Identities=20% Similarity=0.259 Sum_probs=59.2
Q ss_pred HHHHHHhhh--cHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHH
Q 004449 576 MQAARRLSK--DKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEME 653 (753)
Q Consensus 576 MQAarRL~k--dk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmE 653 (753)
||+--|.-. -..++++|--| |.+.||+.- .-++|+|+|+|+-+..-..+++..-+ .|+.--.-.+
T Consensus 22 ~q~~skstgt~s~~~q~~l~ne--e~~eLk~qn----kli~K~l~ei~~~qd~reK~~~~I~s---sL~eTtkdf~---- 88 (230)
T PF03904_consen 22 TQTNSKSTGTQSQKTQMSLENE--EIQELKRQN----KLIIKYLSEIEEKQDIREKNLKEIKS---SLEETTKDFI---- 88 (230)
T ss_pred hhhhhhccCCCcHHHHHHHhHH--HHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH----
Confidence 554444443 25667777544 788886653 34799999999877655444444433 2221000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 654 AAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (753)
Q Consensus 654 AaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~ 709 (753)
..+.-...-.+++++.+-+..+. |.=|..+|.|+..-++.+.+..||+.
T Consensus 89 ---~~~~k~~~dF~~~Lq~~Lk~V~t----de~k~~~~~ei~k~r~e~~~ml~evK 137 (230)
T PF03904_consen 89 ---DKTEKVHNDFQDILQDELKDVDT----DELKNIAQNEIKKVREENKSMLQEVK 137 (230)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhhch----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222333445555544444422 34455577777666655555555533
No 452
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=29.51 E-value=5.1e+02 Score=28.96 Aligned_cols=72 Identities=24% Similarity=0.283 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004449 648 LRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEM 721 (753)
Q Consensus 648 lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~ 721 (753)
+-+.+|-||-.|-+-|.+.=+|..+=++ |-.-.-.--..++.+.|.++++.|.++++++..++...+..+..
T Consensus 39 ~yQ~~EQAr~~A~~fA~~ld~~~~kl~~--Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~ 110 (301)
T PF06120_consen 39 FYQNAEQARQEAIEFADSLDELKEKLKE--MSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQ 110 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999988887665433 22334455678899999999999999999988777665544443
No 453
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=29.51 E-value=3e+02 Score=30.46 Aligned_cols=49 Identities=16% Similarity=0.075 Sum_probs=29.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 004449 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNETAL 727 (753)
Q Consensus 679 k~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~~ 727 (753)
|.+..-++.+.=+.|+..-+..+...+.++++++..-++++..+..+.+
T Consensus 124 R~~~L~~~~~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I 172 (385)
T PRK09859 124 RQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANV 172 (385)
T ss_pred HHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCEE
Confidence 3333334455555666666666666666677777666666666655544
No 454
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=29.49 E-value=1.8e+02 Score=25.36 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 618 SEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 618 sEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
..+-.+--.+..+|.-|...-+.|+.++..|+.|||-.+
T Consensus 21 ~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 21 TKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334555666778888888999999999999999998754
No 455
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=29.36 E-value=6.6e+02 Score=26.06 Aligned_cols=101 Identities=28% Similarity=0.352 Sum_probs=56.4
Q ss_pred HHHhHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhhcHHHHHHHHHhHHHHH----HHHHHHhhhhhhhhhhHHHHHHHHH
Q 004449 551 LKLIPRVRELHNQLHEWTEWANQKVMQAARR-LSKDKAELKTLRQEKEEVE----RLKKEKQILEENTMKKLSEMENALC 625 (753)
Q Consensus 551 lkLv~rv~eLq~qlqewtdWAnqKvMQAarR-L~kdk~ELksLR~EkEE~e----rlkKeKq~lEe~T~KrLsEmEnAL~ 625 (753)
|.||..+++=-.+|+. ++=++.|.|+.... --.-..-|+.++.|+++.+ .+.|+|+.|. ++..|+.++|..|+
T Consensus 26 L~lIksLKeei~emkk-~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~-~~k~rl~~~ek~l~ 103 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKK-KEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQ-NLKARLKELEKELK 103 (201)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3455555554444544 44455555554332 2222334555555555443 2445666663 56677777777777
Q ss_pred HhhhhhHhhhhHHHHHHHhhHHHHHHHH
Q 004449 626 KASGQVERANSAVRRLEVENTALRQEME 653 (753)
Q Consensus 626 kasgQlerAns~vrrLE~EnA~lR~EmE 653 (753)
...-+-+--.-.+.+|+.|.-+|..--+
T Consensus 104 ~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 104 DLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666666666666666666655444
No 456
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=29.14 E-value=9.4e+02 Score=27.74 Aligned_cols=138 Identities=20% Similarity=0.282 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHH---HHHHHHHhhhhhHhhhhHHHHHHHhhHHH
Q 004449 572 NQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSE---MENALCKASGQVERANSAVRRLEVENTAL 648 (753)
Q Consensus 572 nqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsE---mEnAL~kasgQlerAns~vrrLE~EnA~l 648 (753)
-.-..|+--|=..|+.| -||+=+|-+|..+.|-+.|--.|-|=+.+ ...-+-|+.|..++-+..+++++.||..+
T Consensus 69 a~~llq~kirk~~e~~e--glr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~l 146 (401)
T PF06785_consen 69 AGQLLQTKIRKITEKDE--GLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCL 146 (401)
T ss_pred HHHHHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 33445544333344443 57777777777777777776666665444 44568899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 649 RQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQ-----------KALFQEELVTEKRKVVQLLQELDQA 711 (753)
Q Consensus 649 R~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQ-----------K~lLQEELa~EK~Kl~~l~qel~qa 711 (753)
..++++.+-.+-|-..--|++.+--.+++-.-|....+ -.+=|.=|..-.+|+-.|-.|+.-.
T Consensus 147 qlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnL 220 (401)
T PF06785_consen 147 QLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNL 220 (401)
T ss_pred HHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888877665555555554444444443332211 1233555666666666666555443
No 457
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=29.13 E-value=1.3e+03 Score=29.57 Aligned_cols=52 Identities=25% Similarity=0.253 Sum_probs=33.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 639 RRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQ 706 (753)
Q Consensus 639 rrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~q 706 (753)
-++|.|.|++++||+-.|.---| -+.+.-|.-|+++..|+..-+..+.++.+
T Consensus 1055 ~kie~efAa~eaemdeik~~~~e----------------drakqkei~k~L~ehelenLrnEieklnd 1106 (1424)
T KOG4572|consen 1055 AKIEDEFAAIEAEMDEIKDGKCE----------------DRAKQKEIDKILKEHELENLRNEIEKLND 1106 (1424)
T ss_pred hhHHHHHHHHHhhhhhhhhhhhh----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999988765433 34445555666666555544444444433
No 458
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=28.95 E-value=9.7e+02 Score=27.84 Aligned_cols=46 Identities=24% Similarity=0.227 Sum_probs=29.4
Q ss_pred HHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHh
Q 004449 577 QAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKA 627 (753)
Q Consensus 577 QAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~ka 627 (753)
|-+-|...|-...++-| ...|+|-+-..|.||.|.=.+|=.+|.-|
T Consensus 198 ~~aak~~aetkI~~~qR-----~~el~Ka~~dveV~~~~aEA~lAyelqaa 243 (428)
T KOG2668|consen 198 QNAAKIDAETKIASAQR-----TKELIKAATDVEVNTNKAEADLAYELQAA 243 (428)
T ss_pred HhHHhhhhhhhHHHhhh-----hHHHHHhhhhhHhhhhHHHHHHHHHHHHH
Confidence 34444444444444444 45567777788999998888877776544
No 459
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=28.25 E-value=1.4e+02 Score=31.02 Aligned_cols=11 Identities=27% Similarity=0.314 Sum_probs=4.2
Q ss_pred HHHHHHHHhHH
Q 004449 587 AELKTLRQEKE 597 (753)
Q Consensus 587 ~ELksLR~EkE 597 (753)
.+|..++.+.+
T Consensus 78 ~~~~~~~~~~~ 88 (322)
T TIGR01730 78 AQLELAQRSFE 88 (322)
T ss_pred HHHHHHHHHHH
Confidence 33433433333
No 460
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=28.07 E-value=2.6e+02 Score=34.13 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHh
Q 004449 550 ILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQE 595 (753)
Q Consensus 550 ilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~E 595 (753)
+.++-.++.+|+.+++++.+.. +++.+....|-..+.+|+..+.+
T Consensus 69 i~~le~~l~~le~~l~e~~~~~-e~L~~~~~~L~E~~~~L~~~~~~ 113 (759)
T PF01496_consen 69 IDELEEELEELEEELRELNENL-EKLEEELNELEEEKNVLEEEIEF 113 (759)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666665553 33444444444444444433333
No 461
>PLN02320 seryl-tRNA synthetase
Probab=27.61 E-value=4.6e+02 Score=31.16 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 689 LFQEELVTEKRKVVQLLQELDQAK 712 (753)
Q Consensus 689 lLQEELa~EK~Kl~~l~qel~qak 712 (753)
.|.+|...-|++|..|.+++.+++
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~ 157 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLT 157 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444433
No 462
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=27.55 E-value=1.3e+02 Score=29.99 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004449 688 ALFQEELVTEKRKVVQL 704 (753)
Q Consensus 688 ~lLQEELa~EK~Kl~~l 704 (753)
.+||+||..-+.+..++
T Consensus 14 ~~L~~EL~~L~~~r~~i 30 (158)
T PRK05892 14 DHLEAELARLRARRDRL 30 (158)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 34555555444433333
No 463
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=27.12 E-value=3.4e+02 Score=30.69 Aligned_cols=40 Identities=10% Similarity=0.045 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004449 686 QKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNET 725 (753)
Q Consensus 686 QK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~ 725 (753)
+.+--+.|+.+.+..+.+++.++..++..-++++..+..+
T Consensus 157 ~g~is~~~ld~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~ 196 (415)
T PRK11556 157 TNLVSRQELDAQQALVSETEGTIKADEASVASAQLQLDYS 196 (415)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Confidence 3444455666666666666666666655555555555443
No 464
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=26.93 E-value=5.6e+02 Score=24.46 Aligned_cols=78 Identities=15% Similarity=0.245 Sum_probs=40.8
Q ss_pred HHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004449 622 NALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKV 701 (753)
Q Consensus 622 nAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl 701 (753)
.+|.++..+++.+......|+....+...++.+.-.. . -+...+..|..-...|.+.|...+..|
T Consensus 23 ~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~---g------------~~~~~l~~~~~fi~~L~~~I~~q~~~v 87 (147)
T PRK05689 23 LQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSA---G------------MTSSWWINYQQFLQQLEKAITQQRQQL 87 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---C------------cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554444444332100 0 011235555566666777777777777
Q ss_pred HHHHHHHHHHHHH
Q 004449 702 VQLLQELDQAKAL 714 (753)
Q Consensus 702 ~~l~qel~qak~~ 714 (753)
..++++++++++.
T Consensus 88 ~~~~~~ve~~r~~ 100 (147)
T PRK05689 88 TQWTQKVDNARKY 100 (147)
T ss_pred HHHHHHHHHHHHH
Confidence 7766666665544
No 465
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=26.91 E-value=1.4e+03 Score=28.91 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 004449 698 KRKVVQLLQELD 709 (753)
Q Consensus 698 K~Kl~~l~qel~ 709 (753)
|+||-.|+|++.
T Consensus 694 k~kieal~~qik 705 (762)
T PLN03229 694 KEKIEALEQQIK 705 (762)
T ss_pred HHHHHHHHHHHH
Confidence 455555544443
No 466
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=26.90 E-value=4.7e+02 Score=26.92 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 690 FQEELVTEKRKVVQLLQELDQAKAL 714 (753)
Q Consensus 690 LQEELa~EK~Kl~~l~qel~qak~~ 714 (753)
|+.|...-+..+.+|++++++...-
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e 126 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKE 126 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555444433
No 467
>PF11727 ISG65-75: Invariant surface glycoprotein; InterPro: IPR021057 This family is found in Trypanosome species, and appears to be one of two invariant surface glycoproteins, ISG65 and ISG75, that are found in the mammalian stage of the parasitic protozoan. The sequence suggests the two families are polypeptides with N-terminal signal sequences, hydrophilic extracellular domains, single trans-membrane alpha-helices and short cytoplasmic domains. They are both expressed in the bloodstream form but not in the midgut stage. Both polypeptides are distributed over the entire surface of the parasite [, ].
Probab=26.83 E-value=7.5e+02 Score=26.79 Aligned_cols=55 Identities=33% Similarity=0.407 Sum_probs=32.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHHHhhhhhHhhhhHHHHHH
Q 004449 586 KAELKTLRQEKEEVERLKKEKQILEENTMKKLSEM-ENALCKASGQVERANSAVRRLE 642 (753)
Q Consensus 586 k~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEm-EnAL~kasgQlerAns~vrrLE 642 (753)
+..+..++.+.+.++.+ ++..|-|.-.+||.++ +.|-.++..|+++|+.+.+..+
T Consensus 72 ~~~~~~v~~~~~~l~~~--~~~~l~~~~~~kl~~~~~~a~~~~~~~~~~a~~~~~~~~ 127 (286)
T PF11727_consen 72 KLHKEQVDHRVERLRSL--EKGKLTDSDVKKLKEICEEAKKKNTEQLEEAKKAMEEAE 127 (286)
T ss_pred HHHHHHHHHHHHHhhhh--hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666 2666666555555443 5555566667777666665554
No 468
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=26.78 E-value=1.2e+03 Score=29.98 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=12.4
Q ss_pred HHhhCCCCChHHHHHHHHHh
Q 004449 218 LREVRPFFSTGDAMWCLLIC 237 (753)
Q Consensus 218 Lrs~fP~LS~~DAmwyLLlA 237 (753)
|...-|||+.++-=..|+-+
T Consensus 453 l~~La~F~~~~~lEk~~v~a 472 (988)
T KOG2072|consen 453 LYKLAPFFSAFELEKLLVEA 472 (988)
T ss_pred HHHHHhhcCHHHHHHHHHHH
Confidence 34445668888766666544
No 469
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=26.77 E-value=7.9e+02 Score=31.46 Aligned_cols=45 Identities=20% Similarity=0.112 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhHHHHHhHHHHHHHHHHHHHHHHH
Q 004449 655 AKLRAAESAASCQEVSKREK-KTQMKFQSWEKQKALFQEELVTEKR 699 (753)
Q Consensus 655 aKL~A~ES~~sc~Ev~krek-k~lkk~qsWEkQK~lLQEELa~EK~ 699 (753)
-||...|+.-+-.+....+. +-++..+..+.-+++|+.||-.-|.
T Consensus 548 qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~ 593 (913)
T KOG0244|consen 548 QKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKG 593 (913)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 35555555554444333332 3344456666666666666655443
No 470
>KOG3467 consensus Histone H4 [Chromatin structure and dynamics]
Probab=26.53 E-value=45 Score=31.13 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhcCCchHHHHHHHhhccccccCCcc-hhHHHHHHHHhhcc
Q 004449 126 ESQLEELVLSNLDAIFKSAIKKIVACGYMEEVATKAVLRSGLCYGSKDT-VSNIVDNTLAFLRS 188 (753)
Q Consensus 126 e~~Lr~~LL~~Ih~fYl~ALarLP~~g~~e~~~~rALL~AGhCYGplDP-VSNII~NTIwyl~a 188 (753)
+.--|.+|-|+|.++-+-||.||...+= .+ .-.|.||-...- .--.|.|+|||.-.
T Consensus 16 AKrHRK~LsDnIqgitKpaIRRlARr~G-----Vk--Ri~G~~yeE~~~~~k~fl~n~i~~A~~ 72 (103)
T KOG3467|consen 16 AKRHRKVLRDNIQGITKPAIRRLARRGG-----VK--RISGLIYEETRGVLKVFLENVIRDAVT 72 (103)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHhcC-----cc--hhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778999999999999999975431 11 246899987444 33468899998644
No 471
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=26.50 E-value=4.1e+02 Score=26.51 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=25.1
Q ss_pred hhhcHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 004449 582 LSKDKAELKTLRQEKEEVERLKKEKQILEEN 612 (753)
Q Consensus 582 L~kdk~ELksLR~EkEE~erlkKeKq~lEe~ 612 (753)
.---+++++..|.+.|-.+....|-..+.|.
T Consensus 32 ~~~lk~dik~~k~~~enledA~~EieL~Ded 62 (131)
T KOG1760|consen 32 KDDLKADIKEAKTEIENLEDASNEIELLDED 62 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcCcc
Confidence 3344678889999999999998888888877
No 472
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=26.02 E-value=1.4e+02 Score=27.24 Aligned_cols=39 Identities=33% Similarity=0.423 Sum_probs=34.1
Q ss_pred HHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004449 624 LCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAES 662 (753)
Q Consensus 624 L~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES 662 (753)
+.+.+.+|.--|+.|-+||...-.+|.+..|||-.|+..
T Consensus 27 ~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarA 65 (78)
T COG4238 27 IDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARA 65 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 567888999999999999999999999999999777654
No 473
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=26.01 E-value=4e+02 Score=31.55 Aligned_cols=58 Identities=28% Similarity=0.344 Sum_probs=34.3
Q ss_pred ccCCCCchhHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHH
Q 004449 539 HLVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLS 618 (753)
Q Consensus 539 ~~VP~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLs 618 (753)
+-.|-|-|.--+-.|--||.||---+.--++ ...-||+.||+|.| ||-||.--.
T Consensus 560 k~e~~~~~k~s~delr~qi~el~~ive~lk~--------------~~~kel~kl~~dle------------eek~mr~~l 613 (627)
T KOG4348|consen 560 KVETDDVKKNSLDELRAQIIELLCIVEALKK--------------DHGKELEKLRKDLE------------EEKTMRSNL 613 (627)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH------------HHHHHHhhh
Confidence 3345565655555666666666443332221 12357888888877 667777777
Q ss_pred HHHH
Q 004449 619 EMEN 622 (753)
Q Consensus 619 EmEn 622 (753)
|||-
T Consensus 614 emei 617 (627)
T KOG4348|consen 614 EMEI 617 (627)
T ss_pred HhhH
Confidence 7773
No 474
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=25.92 E-value=9.1e+02 Score=27.30 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=52.7
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------------------HHHhHHHHHHHHHHHH
Q 004449 636 SAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQM---------------------KFQSWEKQKALFQEEL 694 (753)
Q Consensus 636 s~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lk---------------------k~qsWEkQK~lLQEEL 694 (753)
-|++-|-.|...++.|++.=|+-|-+-..-|+.+.++-..... -+---..|.-.|++|+
T Consensus 9 eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev 88 (319)
T PF09789_consen 9 EALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEV 88 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3667777888899999999999865555566666665544431 1123345667788888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004449 695 VTEKRKVVQLLQELDQAKA 713 (753)
Q Consensus 695 a~EK~Kl~~l~qel~qak~ 713 (753)
..-++||.++|-+..=.++
T Consensus 89 ~~Lrqkl~E~qGD~KlLR~ 107 (319)
T PF09789_consen 89 EELRQKLNEAQGDIKLLRE 107 (319)
T ss_pred HHHHHHHHHHhchHHHHHH
Confidence 8888888888777443333
No 475
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=25.89 E-value=3.8e+02 Score=30.59 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=20.6
Q ss_pred HHHhHHHHHHHHHHHHhhHHHHHHHHHH
Q 004449 551 LKLIPRVRELHNQLHEWTEWANQKVMQA 578 (753)
Q Consensus 551 lkLv~rv~eLq~qlqewtdWAnqKvMQA 578 (753)
-.+..|..+|+.+|..-.=|.+.+-+|.
T Consensus 26 ~~~~~~~~~le~~~~~p~~w~d~~~~~~ 53 (364)
T TIGR00020 26 EKKKARLEELEKEMEDPNFWNDQERAQA 53 (364)
T ss_pred HHHHHHHHHHHHHhcCCccccCHHHHHH
Confidence 3567788899999988888877755433
No 476
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=25.86 E-value=9.8e+02 Score=26.87 Aligned_cols=29 Identities=34% Similarity=0.471 Sum_probs=14.5
Q ss_pred HHHHHhHHHHHHHHHHHhhhhhhhhhhHH
Q 004449 590 KTLRQEKEEVERLKKEKQILEENTMKKLS 618 (753)
Q Consensus 590 ksLR~EkEE~erlkKeKq~lEe~T~KrLs 618 (753)
|.|....++...++|-+..+|+...|.++
T Consensus 24 k~l~~~~~l~~~~~k~~~~~e~~~~k~~~ 52 (332)
T TIGR01541 24 KSLQSRSDEIIALIKLEKLLEEAERKALE 52 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555544455554444433
No 477
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=25.84 E-value=8.5e+02 Score=29.85 Aligned_cols=105 Identities=19% Similarity=0.194 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHH--------HHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHh
Q 004449 556 RVRELHNQLHEWTEWANQKVMQ--------AARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKA 627 (753)
Q Consensus 556 rv~eLq~qlqewtdWAnqKvMQ--------AarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~ka 627 (753)
+.+.|..+|....+=++.+++- .-++.+.-++.|.+|+.+..+.+++-.++|..++.=.+| ..-|...
T Consensus 326 eaq~l~~~L~~~~~e~~~~~~~~s~~~al~~ele~~~l~A~l~~L~se~q~L~~~~~~r~e~~~~Lq~K----~q~I~~f 401 (632)
T PF14817_consen 326 EAQALSQRLQRLLEEIERRLSGSSEREALALELEVAGLKASLNALRSECQRLKEAAAERQEALRSLQAK----WQRILDF 401 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 5566666666665544444433 224556667888899998888888877888777554333 3344455
Q ss_pred hhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 004449 628 SGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAA 664 (753)
Q Consensus 628 sgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~ 664 (753)
...|+.-...+|-|...|...+...+..++.+.+.+.
T Consensus 402 rqlv~e~QeqIr~LiK~Nsaakt~L~q~~~E~~~~~~ 438 (632)
T PF14817_consen 402 RQLVSEKQEQIRALIKGNSAAKTQLEQSPAEAQEFVQ 438 (632)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhChHHHHHHHh
Confidence 6677777788999999999999998888877766543
No 478
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=25.79 E-value=1.2e+02 Score=24.50 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=25.9
Q ss_pred HHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhc
Q 004449 215 VCVLREVRPFFSTGDAMWCLLICDMNVSHACAM 247 (753)
Q Consensus 215 VafLrs~fP~LS~~DAmwyLLlADaDLl~A~am 247 (753)
+-.|+.+||.--...-=--|-.|+.||..||+.
T Consensus 5 idiL~rvFP~~kr~~Le~iL~~C~GDvv~AIE~ 37 (39)
T PF03474_consen 5 IDILTRVFPHQKRSVLELILQRCNGDVVQAIEQ 37 (39)
T ss_pred HHHHHHHCCCCChHHHHHHHHHcCCcHHHHHHH
Confidence 457888999887665555667899999999974
No 479
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=25.62 E-value=4.8e+02 Score=23.19 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q 004449 644 ENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSW 683 (753)
Q Consensus 644 EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsW 683 (753)
.+.++|..+. +....|.+..+.-...++++..|
T Consensus 27 Ds~~lR~~i~-------~~~~~~~~l~k~~~~~l~~l~~~ 59 (102)
T PF14523_consen 27 DSQELREKIH-------QLIQKTNQLIKEISELLKKLNSL 59 (102)
T ss_dssp --HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555553 66778899999999999999999
No 480
>PRK10865 protein disaggregation chaperone; Provisional
Probab=25.59 E-value=1.4e+03 Score=28.68 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=10.4
Q ss_pred CchhHHHHHHhHHHHHHHHHHH
Q 004449 544 DKRDEIILKLIPRVRELHNQLH 565 (753)
Q Consensus 544 D~KDEmilkLv~rv~eLq~qlq 565 (753)
+.|-+.|-.|-.++..|+.+++
T Consensus 406 ~~kp~~L~rLer~l~~L~~E~e 427 (857)
T PRK10865 406 DSKPEELDRLDRRIIQLKLEQQ 427 (857)
T ss_pred ccChHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555544443
No 481
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.56 E-value=1.1e+03 Score=27.28 Aligned_cols=130 Identities=22% Similarity=0.392 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhH------HHHHHHHHHHhhhhhhhhhhHHHHH
Q 004449 548 EIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEK------EEVERLKKEKQILEENTMKKLSEME 621 (753)
Q Consensus 548 EmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~Ek------EE~erlkKeKq~lEe~T~KrLsEmE 621 (753)
+.+-.+|..+...+.-+..+.. +-|++.++.+.|.+-+.-+..+..-- +.....+++-..++ .++.+.+
T Consensus 363 ~~l~~~i~~~~~~k~~~~~r~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~----~~~~~~~ 437 (503)
T KOG2273|consen 363 EQLREYIRYLESVKSLFEQRSK-ALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLE----EKVNELE 437 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHH----HHHHHHH
Q ss_pred HHHHHhhhh----hHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q 004449 622 NALCKASGQ----VERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTE 697 (753)
Q Consensus 622 nAL~kasgQ----lerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~E 697 (753)
+.+..+.-+ .++.+..+.+++. .-+++|..+ +..|-.....+++++-..
T Consensus 438 ~~~~~~~~~~~~i~~~~~~e~~~f~~---~~~~d~~~~------------------------~~~~~d~~i~~~~~~l~~ 490 (503)
T KOG2273|consen 438 ELLALKELELDEISERIRAELERFEE---SRRQDFKES------------------------LKKYADLHVEYAEQILKA 490 (503)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHH------------------------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH-HHHHHH
Q 004449 698 KRKVVQ-LLQELD 709 (753)
Q Consensus 698 K~Kl~~-l~qel~ 709 (753)
-+++.. +...++
T Consensus 491 W~~~~~~~~~~~~ 503 (503)
T KOG2273|consen 491 WEKFLPSLEKDIS 503 (503)
T ss_pred HHHhcchhhhccC
No 482
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=25.18 E-value=8.5e+02 Score=25.91 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=10.9
Q ss_pred HHHHhhhcHHHHHHHHHhHH
Q 004449 578 AARRLSKDKAELKTLRQEKE 597 (753)
Q Consensus 578 AarRL~kdk~ELksLR~EkE 597 (753)
-..+.++|+.++-.=|...|
T Consensus 16 ~g~~~~kel~~flkeRa~IE 35 (261)
T cd07674 16 HGQISTKELADFVRERAAIE 35 (261)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45666666666554444433
No 483
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=25.15 E-value=5.6e+02 Score=30.15 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=25.2
Q ss_pred HHHHHHHHHHH-HHHHHHhHHHHHhHHHHHHHHHHHHHHHHH
Q 004449 659 AAESAASCQEV-SKREKKTQMKFQSWEKQKALFQEELVTEKR 699 (753)
Q Consensus 659 A~ES~~sc~Ev-~krekk~lkk~qsWEkQK~lLQEELa~EK~ 699 (753)
..+-+-..+|+ .|++....+..+-|..+....-+++..+.+
T Consensus 206 ~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~de 247 (447)
T KOG2751|consen 206 EAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDE 247 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 33333333333 456677777888888877776666666554
No 484
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=25.15 E-value=7.7e+02 Score=26.10 Aligned_cols=41 Identities=15% Similarity=0.082 Sum_probs=27.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (753)
Q Consensus 679 k~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E 719 (753)
-+-.|-.....|++|...-|+++++|+.++.+.+++++|.+
T Consensus 63 ~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~ 103 (276)
T PRK13922 63 GVFESLASLFDLREENEELKKELLELESRLQELEQLEAENA 103 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666777777777777777777777666666553
No 485
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=25.11 E-value=1.2e+02 Score=30.59 Aligned_cols=41 Identities=7% Similarity=0.111 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhhhcccc
Q 004449 688 ALFQEELVTEKRKVVQLL---------QELDQAKALQEQLEEMSNETALI 728 (753)
Q Consensus 688 ~lLQEELa~EK~Kl~~l~---------qel~qak~~q~q~E~~~~~~~~~ 728 (753)
.+|++||..-+.+|+... +++..+.....++|.++.-+-+|
T Consensus 37 ~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L~~A~Ii 86 (160)
T PRK06342 37 KALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAARRRTAQLM 86 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHccCEEE
Confidence 355666666655555542 34444444455555555555555
No 486
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=25.09 E-value=2.9e+02 Score=32.79 Aligned_cols=33 Identities=30% Similarity=0.279 Sum_probs=18.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 678 MKFQSWEKQKALFQEELVTEKRKVVQLLQELDQ 710 (753)
Q Consensus 678 kk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~q 710 (753)
|||+.=.|-|.+|||-|..+-..--+..|-+.|
T Consensus 563 kr~kkEkk~k~k~qe~L~~~sk~reqaeqs~~~ 595 (641)
T KOG3915|consen 563 KRLKKEKKAKRKLQEALEFESKRREQAEQSLKQ 595 (641)
T ss_pred HHHHHHHHHHHHHHHHhhhccccchhhhhcccc
Confidence 333334455788888888876333333333333
No 487
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=25.06 E-value=4.8e+02 Score=32.19 Aligned_cols=25 Identities=32% Similarity=0.207 Sum_probs=15.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 681 QSWEKQKALFQEELVTEKRKVVQLL 705 (753)
Q Consensus 681 qsWEkQK~lLQEELa~EK~Kl~~l~ 705 (753)
++.|+||.-|--|+..-|=|++.+.
T Consensus 170 tsLETqKlDLmaevSeLKLkltalE 194 (861)
T KOG1899|consen 170 TSLETQKLDLMAEVSELKLKLTALE 194 (861)
T ss_pred hhHHHHHhHHHHHHHHhHHHHHHHH
Confidence 5666666666666666666665554
No 488
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=24.84 E-value=5.8e+02 Score=23.90 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=37.7
Q ss_pred hhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004449 630 QVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQM 678 (753)
Q Consensus 630 QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lk 678 (753)
.+.+.....+.++-+...++++--..|..-.|-++.++++.++.+....
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~ 52 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE 52 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3445566777778888888888888888888889888888877766555
No 489
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=24.80 E-value=3.6e+02 Score=26.61 Aligned_cols=16 Identities=25% Similarity=0.491 Sum_probs=7.8
Q ss_pred HHHHhHHHHHHHHHHH
Q 004449 550 ILKLIPRVRELHNQLH 565 (753)
Q Consensus 550 ilkLv~rv~eLq~qlq 565 (753)
+-.|=.++.+|+.|+.
T Consensus 74 l~~ld~ei~~L~~el~ 89 (169)
T PF07106_consen 74 LAELDAEIKELREELA 89 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444555555543
No 490
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=24.79 E-value=7.7e+02 Score=25.31 Aligned_cols=106 Identities=23% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q 004449 618 SEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRA---AESAASCQEVSKREKKTQMKFQSWEKQKALFQEEL 694 (753)
Q Consensus 618 sEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A---~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEEL 694 (753)
...+.|-.+|..=++.|..-+..+. +-+.+.+.-|+.+++. .|-..-=.++.++|++-..|-+.++++...|...-
T Consensus 27 ~~~~~A~~~A~~i~~~A~~eAe~~~-ke~~~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e 105 (201)
T PF12072_consen 27 KKLEQAEKEAEQILEEAEREAEAIK-KEAELEAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKRE 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 695 VTEKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 695 a~EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
..-..+-.+|.+....+.+..++++....+
T Consensus 106 ~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~ 135 (201)
T PF12072_consen 106 EELEKKEEELEQRKEELEEREEELEELIEE 135 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=24.64 E-value=1.2e+03 Score=27.39 Aligned_cols=29 Identities=28% Similarity=0.388 Sum_probs=19.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 681 QSWEKQKALFQEELVTEKRKVVQLLQELD 709 (753)
Q Consensus 681 qsWEkQK~lLQEELa~EK~Kl~~l~qel~ 709 (753)
-+..|+|..|-.||..-|+.+.++.-+++
T Consensus 352 aaLrkerd~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 352 AALRKERDSLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777766666666655
No 492
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=24.58 E-value=5.2e+02 Score=25.85 Aligned_cols=66 Identities=15% Similarity=0.264 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004449 611 ENTMKKLSEMENALCKASGQVERANSAVRRLEV---ENTALRQEMEAAKLRAAESAASCQEVSKREKKT 676 (753)
Q Consensus 611 e~T~KrLsEmEnAL~kasgQlerAns~vrrLE~---EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~ 676 (753)
+.-..++.+.+.++....+||.-+|..+..|.. .|.+|+++.+.-+-...+.....+.-+...+..
T Consensus 16 ~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~ 84 (155)
T PF06810_consen 16 EAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKD 84 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=24.48 E-value=1.1e+03 Score=26.80 Aligned_cols=109 Identities=16% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHH----------HHHHHHh-HHHHHHHHHHHhhhhhh--hh
Q 004449 548 EIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAE----------LKTLRQE-KEEVERLKKEKQILEEN--TM 614 (753)
Q Consensus 548 EmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~E----------LksLR~E-kEE~erlkKeKq~lEe~--T~ 614 (753)
+-+..|+.+..+++..+.+-..=-++=.+++.-|+.+++.. .+.++.+ .+.++..=++--.=|+. ..
T Consensus 179 ~~~~~l~~a~~~yq~a~~ey~~~~~~~~~ks~e~~~~~l~~~~~~g~~v~s~re~~d~W~~~ae~~~~e~~~S~efak~~ 258 (320)
T TIGR01834 179 SQLQRLFRDWMEYQQAMADYQLLEADIGYKSFAALMSDLLARAKSGKPVKTAKALYDLWVIAAEEAYAEVFASEENAKVH 258 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Q ss_pred hhHHHHHHHHHH----------------hhhhhHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 615 KKLSEMENALCK----------------ASGQVERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 615 KrLsEmEnAL~k----------------asgQlerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
-++.+...++++ +..+||.++..+.+||-++..|++|.+.-+
T Consensus 259 G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~ 316 (320)
T TIGR01834 259 GKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLE 316 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 494
>PF15294 Leu_zip: Leucine zipper
Probab=24.47 E-value=1e+03 Score=26.52 Aligned_cols=151 Identities=25% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHh
Q 004449 548 EIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKA 627 (753)
Q Consensus 548 EmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~ka 627 (753)
+++-+-|.|+++=-..|+++=-=.++.++.+++-=.+-...|+.||. .+--.|.++.+=. --..|++||+-+..+
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~----~~~~~~~k~~~~~-~~q~l~dLE~k~a~l 202 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD----EQGDQKGKKDLSF-KAQDLSDLENKMAAL 202 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhccccccc-cccchhhHHHHHHHH
Q ss_pred hhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 628 SGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQE 707 (753)
Q Consensus 628 sgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qe 707 (753)
..+++++ +.-++..+..|.-..-++|=.-..--.. +.-.++.--+||+- -.+-..+.+=|+.-..-|..|+..
T Consensus 203 K~e~ek~---~~d~~~~~k~L~e~L~~~KhelL~~Qeq---L~~aekeLekKfqq-T~ay~NMk~~ltkKn~QiKeLRkr 275 (278)
T PF15294_consen 203 KSELEKA---LQDKESQQKALEETLQSCKHELLRVQEQ---LSLAEKELEKKFQQ-TAAYRNMKEILTKKNEQIKELRKR 275 (278)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcchh---hhcchhhHHHHhCc-cHHHHHhHHHHHhccHHHHHHHHH
Q ss_pred HHH
Q 004449 708 LDQ 710 (753)
Q Consensus 708 l~q 710 (753)
|++
T Consensus 276 l~k 278 (278)
T PF15294_consen 276 LAK 278 (278)
T ss_pred hcC
No 495
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=24.46 E-value=7.2e+02 Score=26.97 Aligned_cols=77 Identities=22% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHh
Q 004449 548 EIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKA 627 (753)
Q Consensus 548 EmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~ka 627 (753)
+||=+|+..++--.+-.+-=.+ .+.=++-.+---.-.-....=.|..|+.+.+.| ...++++.+|+|.--|.+=++|
T Consensus 69 ~~~~~~~~~l~r~i~fq~~qr~--~~~~~~~~~~~~~req~~~~~~K~~e~~~ql~k-e~a~~~~nrk~~~~~E~~nrka 145 (233)
T KOG4739|consen 69 RLIQDLYRKLQRVINFQHKQRN--LQVKLELKQLEKDREQTAYFEKKTQEETQQLSK-EEAFIENNRKKLQASELENRKA 145 (233)
T ss_pred HHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
No 496
>PF01517 HDV_ag: Hepatitis delta virus delta antigen; InterPro: IPR002506 The Hepatitis delta virus (HDV) encodes a single protein, the hepatitis delta antigen (HDAg). The central region of this protein has been shown to bind RNA []. Several interactions are also mediated by a coiled-coil region at the N terminus of the protein [].; GO: 0003723 RNA binding, 0042025 host cell nucleus; PDB: 1A92_D 1BY0_A.
Probab=24.38 E-value=1.3e+02 Score=30.94 Aligned_cols=46 Identities=33% Similarity=0.367 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhh
Q 004449 586 KAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVEN 645 (753)
Q Consensus 586 k~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~En 645 (753)
..|-+.-|..+|++-.- =.+++|++.|+|.-|+|+.. .+.+||-+|
T Consensus 3 ~se~kk~r~gre~~le~-------wv~~rk~~eeler~lrk~~k-------~ikkled~n 48 (194)
T PF01517_consen 3 RSESKKNRGGREEILEQ-------WVSGRKKAEELERDLRKAKK-------KIKKLEDDN 48 (194)
T ss_dssp ----------HHHHHHH-------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHH-
T ss_pred ccccccCcccHHHHHHH-------HHHHHHHHHHHHHHHHHHHH-------HHHhhhccC
No 497
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=24.19 E-value=1.2e+02 Score=29.55 Aligned_cols=30 Identities=47% Similarity=0.548 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHH
Q 004449 596 KEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQ 650 (753)
Q Consensus 596 kEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~ 650 (753)
|||+|-||.....||+ .+++||.||+.||.
T Consensus 66 REEVe~Lk~qI~eL~e-------------------------r~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEE-------------------------RNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHh
No 498
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=24.16 E-value=9.7e+02 Score=27.19 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 004449 640 RLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTE--------KRKVVQLLQELDQA 711 (753)
Q Consensus 640 rLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~E--------K~Kl~~l~qel~qa 711 (753)
+.+.|-.+|..|-+.-+=...+-..-+.|+.+-..+|.+-+.+=.++-..|.+.|... ++.+.+|++++..+
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 004449 712 KALQEQLEE 720 (753)
Q Consensus 712 k~~q~q~E~ 720 (753)
+..-.++|+
T Consensus 81 ~~~l~DmEa 89 (330)
T PF07851_consen 81 RCQLFDMEA 89 (330)
T ss_pred HhhHHHHHh
No 499
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=24.11 E-value=3.4e+02 Score=27.52 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 594 QEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 594 ~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
+...|.+.|+++....- +-....+|+.+|.+...|+..-...-++-|+....-+.|+|+.+
T Consensus 60 ~r~~E~~~Lk~~lk~~k--~~~~~e~lk~~L~~~~~q~~~~~~~~~~~e~~~~~kk~E~e~v~ 120 (168)
T PF06102_consen 60 YREKEIKELKKQLKKTK--DPEEREELKRELQRMESQLKARKRKDREREVKKEHKKEEREKVK 120 (168)
T ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=24.03 E-value=4.8e+02 Score=26.45 Aligned_cols=77 Identities=23% Similarity=0.277 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 004449 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQE 692 (753)
Q Consensus 613 T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQE 692 (753)
++.||..-=+++.+|++.|=++--.....+.+ ..+++-.+|+..+.-+-=+|.--+ -.+|+-
T Consensus 71 ~~~~L~~As~~V~~At~~LV~av~~~~~~~~~----~~~~d~s~ls~~~~k~~eMe~Qv~--------------iL~lE~ 132 (152)
T PF01608_consen 71 TQDRLEQASKAVKKATENLVAAVKAAIEQEEE----QEEVDFSKLSLHQAKRQEMEAQVR--------------ILKLEK 132 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH----HHH----------HHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hcccchhhhcHHHHHHHHHHHHHH--------------HHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 004449 693 ELVTEKRKVVQLLQE 707 (753)
Q Consensus 693 ELa~EK~Kl~~l~qe 707 (753)
||..++.||.+|++.
T Consensus 133 eLe~ar~kL~~lRk~ 147 (152)
T PF01608_consen 133 ELEKARKKLAELRKA 147 (152)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Done!