Query 004449
Match_columns 753
No_of_seqs 117 out of 135
Neff 3.7
Searched_HMMs 29240
Date Tue Mar 26 01:32:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.4 0.1 3.5E-06 49.3 25.4 10 586-595 47-56 (284)
2 3oja_B Anopheles plasmodium-re 97.3 0.0031 1.1E-07 69.1 15.2 85 641-725 500-584 (597)
3 1c1g_A Tropomyosin; contractIl 97.2 0.15 5.1E-06 48.2 24.2 38 616-653 70-107 (284)
4 2dfs_A Myosin-5A; myosin-V, in 97.0 0.023 8E-07 68.5 19.3 82 623-707 971-1052(1080)
5 2efr_A General control protein 96.9 0.12 4.1E-06 50.0 20.3 132 556-719 1-139 (155)
6 4gkw_A Spindle assembly abnorm 96.7 0.061 2.1E-06 51.2 16.2 134 543-684 6-160 (167)
7 1i84_S Smooth muscle myosin he 96.6 0.0041 1.4E-07 75.0 9.6 38 616-653 928-965 (1184)
8 2dfs_A Myosin-5A; myosin-V, in 96.5 0.056 1.9E-06 65.2 17.8 36 576-611 893-928 (1080)
9 1i84_S Smooth muscle myosin he 96.5 0.0046 1.6E-07 74.7 8.5 23 547-569 856-878 (1184)
10 3na7_A HP0958; flagellar bioge 96.1 0.68 2.3E-05 46.9 21.1 110 614-723 52-174 (256)
11 3oja_A Leucine-rich immune mol 95.6 0.47 1.6E-05 51.1 18.3 115 588-716 354-480 (487)
12 3oja_B Anopheles plasmodium-re 95.1 0.17 5.7E-06 55.5 12.9 75 635-709 508-582 (597)
13 3iox_A AGI/II, PA; alpha helix 93.8 0.58 2E-05 52.3 13.5 85 637-731 35-119 (497)
14 3na7_A HP0958; flagellar bioge 93.6 2.4 8.3E-05 42.9 16.8 41 616-656 40-80 (256)
15 1f5n_A Interferon-induced guan 92.8 16 0.00055 41.6 24.1 171 544-714 375-582 (592)
16 3vkg_A Dynein heavy chain, cyt 92.6 4.5 0.00015 54.3 20.9 27 113-144 1445-1471(3245)
17 3vkg_A Dynein heavy chain, cyt 92.4 10 0.00035 51.1 23.7 41 615-655 2014-2054(3245)
18 2v71_A Nuclear distribution pr 92.3 10 0.00034 37.9 18.7 119 561-724 9-127 (189)
19 2i1j_A Moesin; FERM, coiled-co 91.2 0.19 6.6E-06 56.7 5.5 129 592-727 326-461 (575)
20 2fxo_A Myosin heavy chain, car 89.9 12 0.00041 34.5 17.9 101 615-715 13-113 (129)
21 3o0z_A RHO-associated protein 88.5 20 0.00068 35.2 17.8 71 633-713 87-157 (168)
22 2ocy_A RAB guanine nucleotide 88.4 19 0.00065 34.9 18.9 138 572-716 5-146 (154)
23 1otr_A Protein CUE2; protein-p 87.1 0.51 1.7E-05 37.7 3.7 37 213-249 6-42 (49)
24 3i00_A HIP-I, huntingtin-inter 86.6 1.8 6.1E-05 40.3 7.5 52 614-665 39-90 (120)
25 3i00_A HIP-I, huntingtin-inter 85.2 5.2 0.00018 37.2 9.9 69 541-609 8-80 (120)
26 1ic2_A Tropomyosin alpha chain 84.8 11 0.00038 32.2 11.2 42 684-725 33-74 (81)
27 3mq7_A Bone marrow stromal ant 84.7 24 0.00083 33.0 13.9 60 663-722 48-108 (121)
28 2b9c_A Striated-muscle alpha t 84.0 30 0.001 33.0 15.9 79 645-723 54-139 (147)
29 2v66_B Nuclear distribution pr 83.2 28 0.00097 32.1 16.4 50 550-599 5-54 (111)
30 2xnx_M M protein, M1-BC1; cell 82.5 1.8 6E-05 41.7 5.7 97 600-724 43-140 (146)
31 2v71_A Nuclear distribution pr 80.9 25 0.00087 35.0 13.5 136 548-701 17-159 (189)
32 2b9c_A Striated-muscle alpha t 80.8 40 0.0014 32.1 14.9 109 569-684 13-121 (147)
33 1m1j_B Fibrinogen beta chain; 79.5 38 0.0013 37.8 15.8 27 683-709 166-192 (464)
34 4emc_A Monopolin complex subun 77.9 9 0.00031 38.3 9.2 28 626-653 10-37 (190)
35 3tnu_A Keratin, type I cytoske 77.2 5.9 0.0002 36.6 7.3 28 628-655 76-103 (131)
36 3oja_A Leucine-rich immune mol 77.0 25 0.00084 37.8 13.1 57 619-675 425-481 (487)
37 3ghg_A Fibrinogen alpha chain; 76.8 24 0.00081 40.1 13.1 44 685-728 131-195 (562)
38 3haj_A Human pacsin2 F-BAR; pa 76.5 51 0.0017 36.0 15.6 23 671-693 224-246 (486)
39 3tnu_B Keratin, type II cytosk 76.2 8.5 0.00029 35.4 8.1 27 628-654 74-100 (129)
40 1gmj_A ATPase inhibitor; coile 76.1 14 0.00048 32.7 8.9 46 669-720 34-79 (84)
41 3u1c_A Tropomyosin alpha-1 cha 73.3 50 0.0017 29.4 13.1 40 616-655 24-63 (101)
42 3hnw_A Uncharacterized protein 72.8 23 0.00078 33.4 10.2 59 637-709 76-134 (138)
43 3q8t_A Beclin-1; autophagy, AT 72.5 52 0.0018 29.2 13.5 85 621-712 10-94 (96)
44 3tnu_B Keratin, type II cytosk 72.4 59 0.002 29.8 13.5 100 609-711 9-108 (129)
45 2ocy_A RAB guanine nucleotide 70.8 56 0.0019 31.6 12.5 73 613-710 11-83 (154)
46 3tnu_A Keratin, type I cytoske 70.7 65 0.0022 29.6 12.6 46 609-654 11-56 (131)
47 2i1j_A Moesin; FERM, coiled-co 69.4 6.7 0.00023 44.4 6.8 145 557-708 302-456 (575)
48 2b5u_A Colicin E3; high resolu 68.7 1.6E+02 0.0056 33.4 19.0 144 566-725 306-449 (551)
49 1deq_A Fibrinogen (alpha chain 68.3 46 0.0016 36.5 12.5 84 639-722 63-157 (390)
50 2efr_A General control protein 68.2 89 0.0031 30.2 15.8 103 620-725 26-135 (155)
51 2efl_A Formin-binding protein 67.8 1E+02 0.0034 30.6 22.1 11 729-739 282-292 (305)
52 1x8y_A Lamin A/C; structural p 67.4 38 0.0013 29.4 9.7 51 598-655 4-54 (86)
53 2lw1_A ABC transporter ATP-bin 65.8 16 0.00056 31.6 7.0 47 678-724 29-81 (89)
54 1m1j_C Fibrinogen gamma chain; 65.8 22 0.00074 39.1 9.6 29 610-642 33-61 (409)
55 3iox_A AGI/II, PA; alpha helix 65.6 62 0.0021 36.5 13.2 17 641-657 46-62 (497)
56 3ghg_A Fibrinogen alpha chain; 65.4 71 0.0024 36.4 13.6 30 535-564 39-73 (562)
57 1gqe_A Release factor 2, RF2; 65.4 85 0.0029 34.1 13.9 37 702-744 97-133 (365)
58 1fxk_A Prefoldin; archaeal pro 64.9 47 0.0016 28.7 9.9 72 585-656 20-99 (107)
59 1ic2_A Tropomyosin alpha chain 64.8 54 0.0019 27.9 10.0 31 614-644 5-35 (81)
60 3o0z_A RHO-associated protein 64.1 1.1E+02 0.0039 29.9 19.9 62 591-656 21-82 (168)
61 3fpp_A Macrolide-specific effl 62.5 16 0.00055 37.1 7.4 31 691-721 113-143 (341)
62 1wle_A Seryl-tRNA synthetase; 62.4 32 0.0011 38.5 10.3 19 615-633 70-88 (501)
63 3trt_A Vimentin; cytoskeleton, 61.9 58 0.002 27.1 9.5 67 588-656 10-76 (77)
64 2di0_A Activating signal coint 60.9 11 0.00038 32.3 4.9 39 210-248 12-50 (71)
65 3u59_A Tropomyosin beta chain; 59.9 92 0.0031 27.5 12.7 28 689-716 55-82 (101)
66 2xs1_A Programmed cell death 6 59.0 2.2E+02 0.0074 32.8 16.6 153 543-696 377-581 (704)
67 1cii_A Colicin IA; bacteriocin 58.9 1.1E+02 0.0037 34.6 13.4 47 613-659 361-407 (602)
68 2xus_A Breast cancer metastasi 58.2 22 0.00075 28.7 5.8 41 671-713 6-46 (49)
69 4dk0_A Putative MACA; alpha-ha 58.1 9.3 0.00032 39.2 4.8 37 613-649 113-149 (369)
70 3u59_A Tropomyosin beta chain; 57.0 1E+02 0.0035 27.1 12.6 11 589-599 11-21 (101)
71 1l8d_A DNA double-strand break 56.6 60 0.002 28.4 9.2 36 619-654 7-42 (112)
72 2eqb_B RAB guanine nucleotide 56.2 54 0.0018 29.7 8.7 62 630-726 6-67 (97)
73 4dk0_A Putative MACA; alpha-ha 54.9 25 0.00087 36.0 7.4 25 700-724 130-154 (369)
74 2fxo_A Myosin heavy chain, car 53.9 1.3E+02 0.0046 27.5 19.1 84 636-719 41-124 (129)
75 1gk4_A Vimentin; intermediate 53.0 1.1E+02 0.0038 26.2 11.5 50 599-655 3-52 (84)
76 2p22_C Protein SRN2; endosome, 52.7 46 0.0016 33.0 8.6 63 554-627 61-123 (192)
77 2dq0_A Seryl-tRNA synthetase; 52.1 46 0.0016 36.6 9.3 45 589-633 4-49 (455)
78 3ajw_A Flagellar FLIJ protein; 52.0 1.2E+02 0.0042 27.2 10.8 103 607-724 11-115 (150)
79 2v4h_A NF-kappa-B essential mo 52.0 1.2E+02 0.004 28.1 10.3 33 678-710 62-94 (110)
80 3fpp_A Macrolide-specific effl 50.6 11 0.00036 38.4 3.8 57 582-642 85-141 (341)
81 1a92_A Delta antigen; leucine 50.4 14 0.00047 29.8 3.5 28 611-645 10-37 (50)
82 3s4r_A Vimentin; alpha-helix, 50.4 1.3E+02 0.0043 26.6 10.1 64 638-724 25-88 (93)
83 2z5i_A TM, general control pro 50.4 44 0.0015 26.8 6.5 32 680-711 14-45 (52)
84 3pmr_A Amyloid-like protein 1; 50.0 1.6E+02 0.0054 30.1 12.0 66 598-663 26-103 (219)
85 1wgl_A TOLL-interacting protei 49.4 17 0.00057 29.8 4.0 38 213-250 11-48 (59)
86 3ni0_A Bone marrow stromal ant 49.3 1.5E+02 0.0052 26.8 10.5 63 629-705 25-87 (99)
87 3bas_A Myosin heavy chain, str 49.2 1.3E+02 0.0045 26.1 11.3 44 615-658 14-57 (89)
88 1u4q_A Spectrin alpha chain, b 49.2 2.1E+02 0.007 28.3 15.7 45 555-599 3-48 (322)
89 1go4_E MAD1 (mitotic arrest de 49.0 49 0.0017 30.0 7.3 24 634-657 66-89 (100)
90 3err_A Fusion protein of micro 48.1 1.8E+02 0.0061 32.8 13.4 54 589-642 4-73 (536)
91 2gd5_A Charged multivesicular 47.7 1E+02 0.0035 29.5 9.9 69 615-686 10-79 (179)
92 1m1j_C Fibrinogen gamma chain; 47.5 1.9E+02 0.0064 31.8 13.0 22 704-725 117-138 (409)
93 3a7p_A Autophagy protein 16; c 47.3 2.1E+02 0.0071 27.8 12.2 32 617-648 98-129 (152)
94 2zqm_A Prefoldin beta subunit 47.1 99 0.0034 27.0 9.0 73 584-656 24-104 (117)
95 2e7s_A RAB guanine nucleotide 45.7 1.6E+02 0.0053 28.1 10.5 117 581-714 16-132 (135)
96 2f1m_A Acriflavine resistance 44.0 60 0.0021 31.9 7.9 41 686-726 92-132 (277)
97 1cii_A Colicin IA; bacteriocin 42.9 1.4E+02 0.0049 33.7 11.1 34 615-648 356-389 (602)
98 1d7m_A Cortexillin I; coiled-c 42.7 1.9E+02 0.0065 26.1 14.2 64 614-691 24-87 (101)
99 1zbt_A RF-1, peptide chain rel 42.1 53 0.0018 35.7 7.6 49 551-602 20-68 (371)
100 2jee_A YIIU; FTSZ, septum, coi 41.6 79 0.0027 27.8 7.2 45 679-723 14-72 (81)
101 2xnx_M M protein, M1-BC1; cell 39.9 1.1E+02 0.0037 29.6 8.5 13 721-733 105-117 (146)
102 3mq7_A Bone marrow stromal ant 39.9 2.4E+02 0.0082 26.4 11.0 37 614-650 70-106 (121)
103 3m9b_A Proteasome-associated A 39.9 19 0.00066 37.3 3.7 41 672-712 55-95 (251)
104 3u1c_A Tropomyosin alpha-1 cha 39.0 2.1E+02 0.007 25.4 13.8 32 678-709 51-82 (101)
105 2dhy_A CUE domain-containing p 36.3 35 0.0012 28.8 4.1 40 209-248 16-55 (67)
106 2no2_A HIP-I, huntingtin-inter 35.7 2.5E+02 0.0085 25.4 12.1 27 630-656 16-42 (107)
107 3mud_A DNA repair protein XRCC 35.0 57 0.0019 32.3 5.9 31 682-712 139-169 (175)
108 3umh_A Amyloid beta A4 protein 35.0 2.8E+02 0.0094 28.2 11.0 66 598-663 19-96 (211)
109 3d5a_X RF1, peptide chain rele 33.8 1E+02 0.0034 33.4 8.1 41 702-744 72-112 (354)
110 3hhm_B NISH2 P85alpha; PI3KCA, 33.2 4.9E+02 0.017 28.0 14.3 33 679-711 213-245 (373)
111 2v4h_A NF-kappa-B essential mo 33.1 3E+02 0.01 25.5 12.3 30 680-709 78-107 (110)
112 4dyl_A Tyrosine-protein kinase 32.8 1.6E+02 0.0053 31.6 9.4 56 596-652 329-389 (406)
113 1zbt_A RF-1, peptide chain rel 32.6 88 0.003 34.1 7.5 42 702-745 90-131 (371)
114 3aco_A Pacsin2, protein kinase 31.9 4.4E+02 0.015 27.1 15.1 16 674-689 234-249 (350)
115 1gqe_A Release factor 2, RF2; 31.9 2.4E+02 0.0081 30.7 10.6 37 552-591 29-65 (365)
116 3mtu_E Head morphogenesis prot 31.5 66 0.0023 28.1 5.1 34 679-712 38-71 (77)
117 3haj_A Human pacsin2 F-BAR; pa 31.3 5.4E+02 0.019 28.0 15.6 23 614-636 184-206 (486)
118 3iv1_A Tumor susceptibility ge 30.5 2E+02 0.0069 25.1 8.0 62 639-707 14-75 (78)
119 3d5a_X RF1, peptide chain rele 30.3 1.4E+02 0.0047 32.4 8.5 40 550-592 5-44 (354)
120 3mov_A Lamin-B1; LMNB1, B-type 30.1 2.9E+02 0.0099 24.4 9.6 48 601-655 16-63 (95)
121 1ik9_A DNA repair protein XRCC 29.4 4.4E+02 0.015 26.3 12.1 78 622-719 132-210 (213)
122 3hnw_A Uncharacterized protein 28.9 3.7E+02 0.013 25.2 12.6 35 686-720 97-131 (138)
123 1m5i_A APC protein; coiled-coi 28.6 2.5E+02 0.0087 26.4 8.7 81 556-645 19-100 (125)
124 2k48_A Nucleoprotein; viral pr 28.6 1.9E+02 0.0065 26.6 7.7 80 607-716 27-106 (107)
125 1uii_A Geminin; human, DNA rep 27.7 3E+02 0.01 24.3 8.6 51 667-720 31-81 (83)
126 2qyw_A Vesicle transport throu 27.6 1.6E+02 0.0055 26.1 7.1 47 679-725 16-75 (102)
127 3qne_A Seryl-tRNA synthetase, 27.6 2.8E+02 0.0096 31.1 10.6 30 698-727 77-106 (485)
128 3cl3_D NF-kappa-B essential mo 27.5 53 0.0018 31.1 4.1 17 695-711 79-95 (130)
129 2e7s_A RAB guanine nucleotide 27.5 1.1E+02 0.0039 29.0 6.4 26 680-705 41-66 (135)
130 3k29_A Putative uncharacterize 27.4 4.6E+02 0.016 25.8 19.0 42 565-606 15-56 (169)
131 4b6x_A AVRRPS4, avirulence pro 27.0 53 0.0018 29.1 3.7 35 688-722 25-59 (90)
132 3ghg_C Fibrinogen gamma chain; 26.9 2.6E+02 0.0091 30.8 10.0 20 610-629 33-52 (411)
133 3cvf_A Homer-3, homer protein 26.8 1.2E+02 0.0042 26.4 6.0 27 630-656 7-33 (79)
134 1wlq_A Geminin; coiled-coil; 2 26.2 2.8E+02 0.0095 24.5 8.1 52 667-721 23-74 (83)
135 3iv1_A Tumor susceptibility ge 25.9 3.3E+02 0.011 23.7 9.5 24 585-611 23-46 (78)
136 3ghg_B Fibrinogen beta chain; 25.7 6.6E+02 0.023 28.2 13.0 19 610-628 90-108 (461)
137 2xv5_A Lamin-A/C; structural p 25.7 1.7E+02 0.0058 25.0 6.6 45 592-650 3-54 (74)
138 3onj_A T-snare VTI1; helix, HA 25.4 1.9E+02 0.0064 25.4 7.1 46 680-725 3-60 (97)
139 2ejs_A Autocrine motility fact 25.3 94 0.0032 25.7 4.7 35 211-246 13-47 (58)
140 3qne_A Seryl-tRNA synthetase, 25.2 1.5E+02 0.0052 33.2 8.0 27 689-715 75-101 (485)
141 2ke4_A CDC42-interacting prote 25.1 2.5E+02 0.0084 25.1 7.8 69 638-721 17-91 (98)
142 1lwu_C Fibrinogen gamma chain; 24.5 1.3E+02 0.0045 32.0 7.0 34 679-712 20-53 (323)
143 4g3o_A E3 ubiquitin-protein li 24.5 1E+02 0.0035 25.6 4.8 36 210-246 16-51 (58)
144 2efk_A CDC42-interacting prote 24.4 5.2E+02 0.018 25.5 23.0 38 597-634 116-156 (301)
145 1x79_B RAB GTPase binding effe 24.2 4.3E+02 0.015 24.4 11.2 62 593-661 16-77 (112)
146 4etp_A Kinesin-like protein KA 24.1 1.4E+02 0.0049 32.2 7.3 32 617-648 26-57 (403)
147 2wvr_A Geminin; DNA replicatio 23.0 2.9E+02 0.0099 28.0 8.6 50 667-719 100-149 (209)
148 3lay_A Zinc resistance-associa 22.9 2.2E+02 0.0075 27.8 7.7 63 586-658 73-135 (175)
149 1lwu_C Fibrinogen gamma chain; 22.8 2.1E+02 0.0073 30.4 8.2 31 680-710 7-37 (323)
150 1u5p_A Spectrin alpha chain, b 22.5 4.7E+02 0.016 24.3 16.6 45 555-599 3-48 (216)
151 1z96_A DNA-damage, UBA-domain 22.2 1.4E+02 0.0047 21.4 4.7 33 213-247 6-38 (40)
152 3abh_A Pacsin2, protein kinase 22.1 6E+02 0.021 25.4 16.5 14 675-688 235-248 (312)
153 1ify_A HHR23A, UV excision rep 21.8 1.1E+02 0.0036 23.8 4.3 27 140-166 7-33 (49)
154 3mq9_A Bone marrow stromal ant 21.8 7.3E+02 0.025 26.2 15.1 27 615-641 404-430 (471)
155 1wle_A Seryl-tRNA synthetase; 21.8 4.5E+02 0.015 29.4 10.9 34 693-726 117-150 (501)
156 2ekf_A Ancient ubiquitous prot 21.4 1.1E+02 0.0037 25.6 4.4 35 211-246 13-47 (61)
157 1ses_A Seryl-tRNA synthetase; 21.2 3.4E+02 0.012 29.4 9.6 94 589-711 4-97 (421)
158 2fic_A Bridging integrator 1; 21.1 5.8E+02 0.02 24.8 15.7 91 572-669 129-223 (251)
159 3mq9_A Bone marrow stromal ant 21.1 7.5E+02 0.026 26.1 13.6 17 637-653 444-460 (471)
160 3q8t_A Beclin-1; autophagy, AT 20.9 3.3E+02 0.011 24.0 7.8 40 668-707 15-54 (96)
161 4dzn_A Coiled-coil peptide CC- 20.8 1.7E+02 0.006 21.4 4.8 25 688-712 5-29 (33)
162 3ol1_A Vimentin; structural ge 20.7 4.7E+02 0.016 23.6 11.4 35 619-653 66-100 (119)
163 1vcs_A Vesicle transport throu 20.5 3.7E+02 0.013 23.7 8.0 59 586-658 37-96 (102)
164 2wt7_B Transcription factor MA 20.5 3.3E+02 0.011 24.2 7.6 47 661-713 37-83 (90)
165 3plt_A Sphingolipid long chain 20.3 7.1E+02 0.024 25.5 13.4 45 678-722 104-154 (234)
166 2lw1_A ABC transporter ATP-bin 20.3 2.2E+02 0.0074 24.4 6.4 55 630-684 23-80 (89)
167 1jcd_A Major outer membrane li 20.1 1.9E+02 0.0064 23.4 5.4 37 624-660 6-42 (52)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.36 E-value=0.1 Score=49.25 Aligned_cols=10 Identities=30% Similarity=0.458 Sum_probs=3.8
Q ss_pred HHHHHHHHHh
Q 004449 586 KAELKTLRQE 595 (753)
Q Consensus 586 k~ELksLR~E 595 (753)
..++..++.+
T Consensus 47 ~~~~~~~~~~ 56 (284)
T 1c1g_A 47 QKKLKATEDE 56 (284)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.29 E-value=0.0031 Score=69.08 Aligned_cols=85 Identities=20% Similarity=0.199 Sum_probs=67.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 641 LEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEE 720 (753)
Q Consensus 641 LE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~ 720 (753)
++.....+++++...+-..++-..-.++..+..++-.+.++.-++++..++..+..+|.++.++.||++++++..+|.|.
T Consensus 500 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 500 LARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445555555555666666777777777777888899999999999999999999999999999999999999999
Q ss_pred hhhhc
Q 004449 721 MSNET 725 (753)
Q Consensus 721 ~~~~~ 725 (753)
++++-
T Consensus 580 ~~~~~ 584 (597)
T 3oja_B 580 KKNRN 584 (597)
T ss_dssp TTC--
T ss_pred HhcCC
Confidence 98764
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.22 E-value=0.15 Score=48.16 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHH
Q 004449 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEME 653 (753)
Q Consensus 616 rLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmE 653 (753)
.+.+++..+....+++......+..++.+...+..+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (284)
T 1c1g_A 70 KLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLA 107 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.95 E-value=0.023 Score=68.46 Aligned_cols=82 Identities=17% Similarity=0.213 Sum_probs=54.4
Q ss_pred HHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004449 623 ALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVV 702 (753)
Q Consensus 623 AL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~ 702 (753)
.|++...+++.+.+.|..|+.|+++++.+.+.+.-.-.+-...+++... ....++.++++++.+|++++.+-...+.
T Consensus 971 ~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 971 RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777788888888888888777665444444444544442 3336777888888888877777766666
Q ss_pred HHHHH
Q 004449 703 QLLQE 707 (753)
Q Consensus 703 ~l~qe 707 (753)
+..++
T Consensus 1048 ~~~~~ 1052 (1080)
T 2dfs_A 1048 DQAKE 1052 (1080)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 5
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.92 E-value=0.12 Score=50.02 Aligned_cols=132 Identities=25% Similarity=0.265 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhh-------
Q 004449 556 RVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKAS------- 628 (753)
Q Consensus 556 rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kas------- 628 (753)
|+..|+.||++=.+=|..|.-.+|| +-.|+ |.++.. =+..-.|+.++|.+|+.+.
T Consensus 1 r~~~lE~qlkeaae~ad~KyeEvaR-~E~dL----------EraEER-------ae~aE~k~~eLEeeL~~v~~nlKsLE 62 (155)
T 2efr_A 1 RMKQLEDKVEELLSKNYHLENEVAR-LKKLL----------ERAEER-------AELSEGKSAELEEELKTVTNNLKSLE 62 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----------HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHH-HHHHH----------HHHHHH-------HHHHHHHHHHHHHHHHHHHHhhccch
Confidence 5778999999998889999999998 33332 222221 1223345555555544443
Q ss_pred hhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 629 GQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQEL 708 (753)
Q Consensus 629 gQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel 708 (753)
.+-++++-....+|.++..|......|-.+|-+..++ .+-.|++-..|.++|..+|.|...++++|
T Consensus 63 ~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERs--------------v~kLEk~id~lEd~L~~~Kek~~~i~~eL 128 (155)
T 2efr_A 63 AQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERS--------------VTKLEKSIDDLEDELYAQKLKYKAISEEM 128 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677788899999999888888888888888 44567888899999999999999999999
Q ss_pred HHHHHHHHHHH
Q 004449 709 DQAKALQEQLE 719 (753)
Q Consensus 709 ~qak~~q~q~E 719 (753)
.++=.--..+.
T Consensus 129 d~tl~el~~~~ 139 (155)
T 2efr_A 129 KQLEDKVEELL 139 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 98655444443
No 6
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=96.74 E-value=0.061 Score=51.21 Aligned_cols=134 Identities=31% Similarity=0.395 Sum_probs=97.4
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHhhH----------HHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHH-HHHHHhhhhh
Q 004449 543 QDKRDEIILKLIPRVRELHNQLHEWTE----------WANQKVMQAARRLSKDKAELKTLRQEKEEVER-LKKEKQILEE 611 (753)
Q Consensus 543 ~D~KDEmilkLv~rv~eLq~qlqewtd----------WAnqKvMQAarRL~kdk~ELksLR~EkEE~er-lkKeKq~lEe 611 (753)
-..||-+|-+|-.-+..|++++.|-.+ =-+.||=|.-.|=.--+.||-.||.|.+-++| |.|--+.|--
T Consensus 6 aE~K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkr 85 (167)
T 4gkw_A 6 VEDKEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKR 85 (167)
T ss_dssp -CCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 356888999999999999999987654 24678888888888888888899988888876 3332222222
Q ss_pred h---------hhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHH
Q 004449 612 N---------TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQM-KFQ 681 (753)
Q Consensus 612 ~---------T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lk-k~q 681 (753)
| -+.||-|+|--|... .+-|-.|..-+-.||+|+|--||.+.|...|+-. +|-|...+| |++
T Consensus 86 n~~qQnQQSlDiRKLrELEADLKEK-------DsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~-LkvENE~vkerl~ 157 (167)
T 4gkw_A 86 NSQQQNQQSLDMRKLGELEADLKEK-------DSMVESLTETIGILRKELENEKLKAAENMDSFEK-LSMENENLKEKIA 157 (167)
T ss_dssp HHHHHHHHHHHHHHTHHHHHTHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred hhHHHhHhhhhHHHHHHHHhHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhHHHHHH
Confidence 2 467888888766554 4567778888899999999999999999999644 344444443 344
Q ss_pred hHH
Q 004449 682 SWE 684 (753)
Q Consensus 682 sWE 684 (753)
.+.
T Consensus 158 mYR 160 (167)
T 4gkw_A 158 HYR 160 (167)
T ss_dssp HHT
T ss_pred HHH
Confidence 333
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.62 E-value=0.0041 Score=75.04 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHH
Q 004449 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEME 653 (753)
Q Consensus 616 rLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmE 653 (753)
++.+++..+.....+++.......++|.++..++.+++
T Consensus 928 ~l~ele~elee~ee~l~el~~e~~~le~el~~L~~ele 965 (1184)
T 1i84_S 928 ILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965 (1184)
T ss_dssp HHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.47 E-value=0.056 Score=65.24 Aligned_cols=36 Identities=42% Similarity=0.410 Sum_probs=11.7
Q ss_pred HHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 004449 576 MQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEE 611 (753)
Q Consensus 576 MQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe 611 (753)
+|++-|--....+++.||.|...++++++.++-||.
T Consensus 893 iQs~~R~~laRr~~~~Lk~ear~~~~l~~~~~~LE~ 928 (1080)
T 2dfs_A 893 LQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLEN 928 (1080)
T ss_dssp HHHHHHHHHHHHHTTTC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 466666556666788888888888888888887775
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.45 E-value=0.0046 Score=74.67 Aligned_cols=23 Identities=4% Similarity=0.011 Sum_probs=10.5
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhH
Q 004449 547 DEIILKLIPRVRELHNQLHEWTE 569 (753)
Q Consensus 547 DEmilkLv~rv~eLq~qlqewtd 569 (753)
.+-+..|-.++.+|+.++..-.+
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~ 878 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEA 878 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555444333
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.14 E-value=0.68 Score=46.89 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=68.4
Q ss_pred hhhHHHHHHHHHHhhhhhHhhhhHHHHHHH---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q 004449 614 MKKLSEMENALCKASGQVERANSAVRRLEV---------ENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWE 684 (753)
Q Consensus 614 ~KrLsEmEnAL~kasgQlerAns~vrrLE~---------EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWE 684 (753)
...+.+++..+.+...+++.+.+.+.+.+. |...|.+|++.++.+-........++..+-...-..+...+
T Consensus 52 ~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~ 131 (256)
T 3na7_A 52 EEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLK 131 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555544443 34578889999998888888888888887777777777777
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Q 004449 685 KQKALFQEELVTEKRKV----VQLLQELDQAKALQEQLEEMSN 723 (753)
Q Consensus 685 kQK~lLQEELa~EK~Kl----~~l~qel~qak~~q~q~E~~~~ 723 (753)
.+...++++|...+..+ +++.++++......+++.+.+-
T Consensus 132 ~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~ 174 (256)
T 3na7_A 132 KEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTE 174 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 77777777776655543 3344444444444444444443
No 11
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.62 E-value=0.47 Score=51.15 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=75.9
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHh------------hhhHHHHHHHhhHHHHHHHHHH
Q 004449 588 ELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVER------------ANSAVRRLEVENTALRQEMEAA 655 (753)
Q Consensus 588 ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQler------------Ans~vrrLE~EnA~lR~EmEAa 655 (753)
++..+++++...++-|++....-+.-++.+.||+..+..+-+|+|. -|..+.+.|...+++..|+|.+
T Consensus 354 ~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (487)
T 3oja_A 354 QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNA 433 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5555666666444444444444455678888999999999999986 4444555554444444444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 656 KLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (753)
Q Consensus 656 KL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~ 716 (753)
+ +-.++.....+.|+.+++.++.||..-..+|....+.+.-|.++..
T Consensus 434 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (487)
T 3oja_A 434 I--------------RDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQ 480 (487)
T ss_dssp H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--------------hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHH
Confidence 2 2244556678888888888888888888888888888877776543
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.06 E-value=0.17 Score=55.51 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=46.1
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 635 NSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (753)
Q Consensus 635 ns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~ 709 (753)
...++.++.+.+.+..+.++.+-...+-.+.++.+-++-.+.-++++...++...|++|++..+.+|.++++++.
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 508 NKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444444444444444445555555555556666777777888888888888888888887654
No 13
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=93.82 E-value=0.58 Score=52.34 Aligned_cols=85 Identities=27% Similarity=0.318 Sum_probs=63.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (753)
Q Consensus 637 ~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~ 716 (753)
.+.....+|++|.+|-||.|-+-++.-+..... +...++..++.+.++++=..|+++-++++++.+..+.
T Consensus 35 ~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~----------l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~la 104 (497)
T 3iox_A 35 AVAANNAANAALTAENTAIKKRNADAKADYEAK----------LAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALA 104 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777775444443333332 3335566666677788888899999999999999999
Q ss_pred HHHHhhhhcccccCC
Q 004449 717 QLEEMSNETALISDP 731 (753)
Q Consensus 717 q~E~~~~~~~~~~~~ 731 (753)
++|..-+|+--++.|
T Consensus 105 e~ek~k~eDGyLs~~ 119 (497)
T 3iox_A 105 ELEKHKNEDGNLTEP 119 (497)
T ss_dssp HHTTTTTSTTSBSSC
T ss_pred HHhhccccCCCccch
Confidence 999999999999987
No 14
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.64 E-value=2.4 Score=42.85 Aligned_cols=41 Identities=7% Similarity=0.014 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 616 rLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
.+..++..+.++..+++.....++++|.++..++.-.+..+
T Consensus 40 ~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~ 80 (256)
T 3na7_A 40 DKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ 80 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666677777777666665555443
No 15
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=92.82 E-value=16 Score=41.60 Aligned_cols=171 Identities=15% Similarity=0.144 Sum_probs=109.9
Q ss_pred CchhHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHH-HHHhhhcHHH------------HHHHHHhHHHH-----------
Q 004449 544 DKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQA-ARRLSKDKAE------------LKTLRQEKEEV----------- 599 (753)
Q Consensus 544 D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvMQA-arRL~kdk~E------------LksLR~EkEE~----------- 599 (753)
|...+.--+|..++.+.-.++....+=+..+--++ -.+|...+.+ ...+.++++++
T Consensus 375 d~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~ll~~l~~~l~~~i~~g~~~~p~g~~~~~~~~~~~~~~Y~~~~~kg 454 (592)
T 1f5n_A 375 DVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKG 454 (592)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHHHHHhcCCc
Confidence 55567777788888877777777666666553333 3444433332 12233333322
Q ss_pred -------HHHHHHHhhhhhh---hhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 600 -------ERLKKEKQILEEN---TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEV 669 (753)
Q Consensus 600 -------erlkKeKq~lEe~---T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev 669 (753)
+.+=+.+..+++. |=+.|++.|.+|......-+.|....+.||....++.+-||+-+.+=.|-.+...+=
T Consensus 455 ~~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~k 534 (592)
T 1f5n_A 455 IQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEK 534 (592)
T ss_dssp TTHHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333333333 338888899888888888888888999999999999999999999999999998887
Q ss_pred HHHHHHhHHH-HHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 004449 670 SKREKKTQMK-FQSWEKQKALFQEELVTE--KRKVVQLLQELDQAKAL 714 (753)
Q Consensus 670 ~krekk~lkk-~qsWEkQK~lLQEELa~E--K~Kl~~l~qel~qak~~ 714 (753)
.++|++.+.+ .+..-..|.+-|++|..| +.|...+++|+.+.++.
T Consensus 535 me~~~~~~~~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 535 MENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777765544 333444555555555544 45555666655555443
No 16
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.61 E-value=4.5 Score=54.28 Aligned_cols=27 Identities=15% Similarity=0.009 Sum_probs=13.7
Q ss_pred hhhhccCCCchhhHHHHHHHHHHhHHHHHHHH
Q 004449 113 VEEFQDADWSDLTESQLEELVLSNLDAIFKSA 144 (753)
Q Consensus 113 ~e~~~~~~W~~~te~~Lr~~LL~~Ih~fYl~A 144 (753)
...|.-....+|+.++|. .|.+.|..+
T Consensus 1445 ~r~F~vi~i~~ps~esL~-----~If~til~~ 1471 (3245)
T 3vkg_A 1445 LRHAPILLVDFPSTSSLT-----QIYGTFNRA 1471 (3245)
T ss_dssp HTTCCEEECCCCCHHHHH-----HHHHHHHHH
T ss_pred HhhceEEEeCCCCHHHHH-----HHHHHHHHH
Confidence 444544445666666633 444444444
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.35 E-value=10 Score=51.05 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAa 655 (753)
.+|.++|..|.+|..+|+.+.+.+.+||.+.+.|+++.+++
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~ 2054 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATL 2054 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666666666666655544
No 18
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.25 E-value=10 Score=37.86 Aligned_cols=119 Identities=21% Similarity=0.276 Sum_probs=75.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHH
Q 004449 561 HNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRR 640 (753)
Q Consensus 561 q~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrr 640 (753)
+.++.-|++=|.+.. ..+..|+.|-+|.+..-+ |+|-+|. .+|++++...+.
T Consensus 9 ~ee~~ywk~~~~~~~-----------q~~~~le~El~EFqesSr--------------ELE~ELE---~eL~~~Ek~~~~ 60 (189)
T 2v71_A 9 KEETAYWKELSMKYK-----------QSFQEARDELVEFQEGSR--------------ELEAELE---AQLVQAEQRNRD 60 (189)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--------------HHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--------------HHHHHHH---HHHHHHHHHHHH
Confidence 445666666555532 234445555555543311 3444443 366777778888
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 641 LEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEE 720 (753)
Q Consensus 641 LE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~ 720 (753)
|...|+.|+.|.+..|-.-..+- .-+.++-..||.||+.-+.....++..+-...+..+-+|-
T Consensus 61 L~~~~~~L~~E~e~~k~K~~~~~-----------------~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr 123 (189)
T 2v71_A 61 LQADNQRLKYEVEALKEKLEHQY-----------------AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 123 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 88888888888888775443322 1245577788888888888888888777777777776666
Q ss_pred hhhh
Q 004449 721 MSNE 724 (753)
Q Consensus 721 ~~~~ 724 (753)
.-|-
T Consensus 124 ~~R~ 127 (189)
T 2v71_A 124 AKRA 127 (189)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 19
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=91.15 E-value=0.19 Score=56.73 Aligned_cols=129 Identities=16% Similarity=0.226 Sum_probs=46.4
Q ss_pred HHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 592 LRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSK 671 (753)
Q Consensus 592 LR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~k 671 (753)
-|++||++||- ++.|| .||-+||...++|...|.++.-++++|+.+......|.+----.+.|....++.+..
T Consensus 326 ~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~ 398 (575)
T 2i1j_A 326 EIAARERAEKK---QQEYQ----DRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEE 398 (575)
T ss_dssp CCCHHHHHHHH---HHHHH----HHHHHHHHHHHHHHHHHHHHHHC----------------------------------
T ss_pred HHHHHHHHHHh---HHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655 44444 599999999999999999999999999877655444433322233333444443332
Q ss_pred HHHHhHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 004449 672 REKKTQM-------KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNETAL 727 (753)
Q Consensus 672 rekk~lk-------k~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~~ 727 (753)
--.++.+ ++..-+-.-..|.+|-..--.-..+++++|..|+..+++...++.+.+.
T Consensus 399 ~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~~~~ 461 (575)
T 2i1j_A 399 TKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATT 461 (575)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222211 2222233334455555554555667888888898888887777776555
No 20
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=89.94 E-value=12 Score=34.54 Aligned_cols=101 Identities=14% Similarity=0.171 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEEL 694 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEEL 694 (753)
+.+..|+-.|.+....+++....-.+||.++..+..|+..-.++-.---..|.++-.+-.+..++-.-.|.+-.-|++.|
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rl 92 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRL 92 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666667777777777777777777776666653322222235566666666666666666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004449 695 VTEKRKVVQLLQELDQAKALQ 715 (753)
Q Consensus 695 a~EK~Kl~~l~qel~qak~~q 715 (753)
..+......|..+-.++..--
T Consensus 93 eeeee~~~~L~~~kkkle~e~ 113 (129)
T 2fxo_A 93 EDEEEMNAELTAKKRKLEDEC 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766655554443
No 21
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=88.51 E-value=20 Score=35.23 Aligned_cols=71 Identities=24% Similarity=0.269 Sum_probs=44.8
Q ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 633 RANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (753)
Q Consensus 633 rAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak 712 (753)
++.-.+..|++.+..|..|++..|-+-+. +.---++...|+-..||+|+-+.=||. -||..+|+.++|-.
T Consensus 87 q~se~~~elq~ri~~L~~El~~~k~~~~k-------~~~e~r~L~Ekl~~lEKe~a~~eid~~---~eLKalQ~~~eqE~ 156 (168)
T 3o0z_A 87 HDSEMIGDLQARITSLQEEVKHLKHNLEK-------VEGERKEAQDMLNHSEKEKNNLEIDLN---YKLKSLQQRLEQEV 156 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHH
Confidence 34455667777888888887776654433 233345566677788888887775543 34666666666644
Q ss_pred H
Q 004449 713 A 713 (753)
Q Consensus 713 ~ 713 (753)
.
T Consensus 157 ~ 157 (168)
T 3o0z_A 157 N 157 (168)
T ss_dssp H
T ss_pred H
Confidence 3
No 22
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.42 E-value=19 Score=34.89 Aligned_cols=138 Identities=15% Similarity=0.182 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHhHHHH----HHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHH
Q 004449 572 NQKVMQAARRLSKDKAELKTLRQEKEEV----ERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTA 647 (753)
Q Consensus 572 nqKvMQAarRL~kdk~ELksLR~EkEE~----erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~ 647 (753)
+.|.++|..|-+.-=.+|..+|++.+.. ..|-+.+..+..- ..++.+.+-.+.+...++.+....-...|.++..
T Consensus 5 StKLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l-~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ 83 (154)
T 2ocy_A 5 STQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTL-KRELSDRDDEVKRLREDIAKENELRTKAEEEADK 83 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666666665521 1111122222211 1234455555555556666665555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 648 LRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (753)
Q Consensus 648 lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~ 716 (753)
|..|+|- |.|+ =+-|+=+---..-+.-..-|+.-..|++.|.+-...|.-+|.+|...|..-.
T Consensus 84 ie~ElEe--LTas----LFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 84 LNKEVED--LTAS----LFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666653 3222 2222222222233334556677788999999999999999999988876533
No 23
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=87.13 E-value=0.51 Score=37.74 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=33.7
Q ss_pred hHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhccC
Q 004449 213 ELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMDG 249 (753)
Q Consensus 213 GLVafLrs~fP~LS~~DAmwyLLlADaDLl~A~am~~ 249 (753)
.=|.+|.+.||.++..++-++|..|+.|+-.||.+-.
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL 42 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLL 42 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4578999999999999999999999999999998754
No 24
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=86.57 E-value=1.8 Score=40.29 Aligned_cols=52 Identities=6% Similarity=0.181 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004449 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAAS 665 (753)
Q Consensus 614 ~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~s 665 (753)
...+++|++.+....++|+-....+++.-+||..||.|++.....+.++...
T Consensus 39 q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~ 90 (120)
T 3i00_A 39 QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKA 90 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3445555555555555555555567777888999999999877666666544
No 25
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=85.20 E-value=5.2 Score=37.19 Aligned_cols=69 Identities=25% Similarity=0.337 Sum_probs=54.8
Q ss_pred CCCCchhHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHh----HHHHHHHHHHHhhh
Q 004449 541 VPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQE----KEEVERLKKEKQIL 609 (753)
Q Consensus 541 VP~D~KDEmilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~E----kEE~erlkKeKq~l 609 (753)
+.+|+||.+|--|=.-|..|+.++..-+-=|+.-|.|--.|+..-.+||..=|++ ++|.++|+.+...|
T Consensus 8 ~~~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 8 VNKDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999888888777777776655 44566676555544
No 26
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=84.82 E-value=11 Score=32.18 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004449 684 EKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNET 725 (753)
Q Consensus 684 EkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~ 725 (753)
|+....+.+||.+-+.||..|..+|+++...-.+...++.++
T Consensus 33 e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 33 EERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788999999999999999999888877777766553
No 27
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=84.70 E-value=24 Score=32.98 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004449 663 AASCQEVSKREKKTQMKFQSW-EKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMS 722 (753)
Q Consensus 663 ~~sc~Ev~krekk~lkk~qsW-EkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~ 722 (753)
+++|-....--+.+|++-++| .++-..||.||.+-++||-....++++.+.-....-+++
T Consensus 48 AaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 48 AATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 356777666677777776666 455667999999999988888777777665544443443
No 28
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=84.02 E-value=30 Score=32.96 Aligned_cols=79 Identities=18% Similarity=0.178 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 645 NTALRQEMEAAKLRAAESAASCQEVSKREK-------KTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQ 717 (753)
Q Consensus 645 nA~lR~EmEAaKL~A~ES~~sc~Ev~krek-------k~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q 717 (753)
+..|..+..-||..|-++..-+.|+.+|-. ++-.|...-|..-.-|.+||..--..|..|.-.-.++-+..+.
T Consensus 54 ~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~ 133 (147)
T 2b9c_A 54 MEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYH 133 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 334445555555666666666666655533 2223334444455556666666666666666555666666666
Q ss_pred HHHhhh
Q 004449 718 LEEMSN 723 (753)
Q Consensus 718 ~E~~~~ 723 (753)
.|.+|+
T Consensus 134 yee~I~ 139 (147)
T 2b9c_A 134 LENEVA 139 (147)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 666654
No 29
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=83.20 E-value=28 Score=32.06 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=30.1
Q ss_pred HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHH
Q 004449 550 ILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEV 599 (753)
Q Consensus 550 ilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~ 599 (753)
+-+|..++.-|..++-+|++=.++---++-.-...-..||..||.++++.
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l 54 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQL 54 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777888888876444433333444455555666666665544
No 30
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=82.55 E-value=1.8 Score=41.72 Aligned_cols=97 Identities=20% Similarity=0.194 Sum_probs=35.0
Q ss_pred HHHHHHHhhhhhhh-hhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004449 600 ERLKKEKQILEENT-MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQM 678 (753)
Q Consensus 600 erlkKeKq~lEe~T-~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lk 678 (753)
+.|+.+++.+|.+. --|--=+|+.+...+-.++...++...++.+.+.++++.++.
T Consensus 43 ~kl~~e~~i~eas~~~~~~~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~L----------------------- 99 (146)
T 2xnx_M 43 KKKALELAIDQASQDYNRANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQL----------------------- 99 (146)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHH-----------------------
Confidence 34455566655542 122333455556666677777777777777777666653221
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 679 k~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
+.++.+|.||..---.--..|.++|.-.+...+|+|+.+-|
T Consensus 100 -----eAE~aKLeEekQIseASRqgLrRDLeASReAKKqlEadl~~ 140 (146)
T 2xnx_M 100 -----TIEKAKLEEEKQISDASRQSLRRDLDASREAKKQVEKDLLE 140 (146)
T ss_dssp -----HHHHHHHGGGTTTC---------------------------
T ss_pred -----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222233322211111245677777788888888876654
No 31
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=80.85 E-value=25 Score=34.99 Aligned_cols=136 Identities=24% Similarity=0.314 Sum_probs=87.4
Q ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHH-------HHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHH
Q 004449 548 EIILKLIPRVRELHNQLHEWTEWANQ-------KVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEM 620 (753)
Q Consensus 548 EmilkLv~rv~eLq~qlqewtdWAnq-------KvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEm 620 (753)
+....+..++.+|+.+|.+..+=-.+ =+-|+-.|+..-+..+..|+.|.++... .-+..--...+-++.+
T Consensus 17 ~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~---K~~~~~~e~~~~~~~L 93 (189)
T 2v71_A 17 ELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKE---KLEHQYAQSYKQVSVL 93 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 45778888888888888888765442 3445556666777777788887776522 1111222223467778
Q ss_pred HHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q 004449 621 ENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRK 700 (753)
Q Consensus 621 EnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~K 700 (753)
+..|.......+.-...+|.||..|-.|- .+......|.. .+-.|=...+. ..++|+.||. ||..
T Consensus 94 q~el~~l~~~~~~l~~~ireLEq~NDdlE----r~~R~~~~Sle---D~e~kln~aiE-------r~alLE~El~-EKe~ 158 (189)
T 2v71_A 94 EDDLSQTRAIKEQLHKYVRELEQANDDLE----RAKRATIMSLE---DFEQRLNQAIE-------RNAFLESELD-EKES 158 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HHHHHHHHHHH-------HHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHhhHH---HHHHHHHHHHH-------HHHHHHHHHH-HHHH
Confidence 88888888888999999999999998764 44444444333 33333333333 4678888886 3554
Q ss_pred H
Q 004449 701 V 701 (753)
Q Consensus 701 l 701 (753)
+
T Consensus 159 l 159 (189)
T 2v71_A 159 L 159 (189)
T ss_dssp H
T ss_pred H
Confidence 4
No 32
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=80.83 E-value=40 Score=32.13 Aligned_cols=109 Identities=21% Similarity=0.252 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHH
Q 004449 569 EWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTAL 648 (753)
Q Consensus 569 dWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~l 648 (753)
|++..|+-+++.+| ....+.-+|.+|..|--..-+...-.|+..+|..|..|....+-|+--.....-..+.+
T Consensus 13 er~eerl~~a~~kL-------eeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~ 85 (147)
T 2b9c_A 13 DRAQERLATALQKL-------EEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVII 85 (147)
T ss_dssp GGGGTTTTHHHHHH-------HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555555555444 34555556666554432222223335666666666666666666666555555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q 004449 649 RQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWE 684 (753)
Q Consensus 649 R~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWE 684 (753)
..+.+.|.=+|-.+-..|.++-..-+-.-.++++.|
T Consensus 86 E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 86 ESDLERAEERAELSEGKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 666666666666666666655555454445555544
No 33
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=79.50 E-value=38 Score=37.82 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 683 WEKQKALFQEELVTEKRKVVQLLQELD 709 (753)
Q Consensus 683 WEkQK~lLQEELa~EK~Kl~~l~qel~ 709 (753)
-..+-..||..|..-+.||.+|...+.
T Consensus 166 ~~~~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 166 IPSSLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666655554
No 34
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=77.94 E-value=9 Score=38.30 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=17.4
Q ss_pred HhhhhhHhhhhHHHHHHHhhHHHHHHHH
Q 004449 626 KASGQVERANSAVRRLEVENTALRQEME 653 (753)
Q Consensus 626 kasgQlerAns~vrrLE~EnA~lR~EmE 653 (753)
.+..|+|.|+-.|.+|-.||..|+.+.+
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLD 37 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999988
No 35
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.22 E-value=5.9 Score=36.61 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.2
Q ss_pred hhhhHhhhhHHHHHHHhhHHHHHHHHHH
Q 004449 628 SGQVERANSAVRRLEVENTALRQEMEAA 655 (753)
Q Consensus 628 sgQlerAns~vrrLE~EnA~lR~EmEAa 655 (753)
..+++.++..+..||.+.+.+|.+|+.-
T Consensus 76 ~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 76 CMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999999999999999753
No 36
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.96 E-value=25 Score=37.82 Aligned_cols=57 Identities=25% Similarity=0.222 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 619 EMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKK 675 (753)
Q Consensus 619 EmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk 675 (753)
++|+...++....+.....+.+|+.||+.++++++-....-.+.-+-.+++..|+..
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQN 481 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHH
Confidence 444555555555666666677777777777777777777666666666666666543
No 37
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.81 E-value=24 Score=40.15 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhhhhcccc
Q 004449 685 KQKALFQEELVTEKRKVVQLLQELD---------------------QAKALQEQLEEMSNETALI 728 (753)
Q Consensus 685 kQK~lLQEELa~EK~Kl~~l~qel~---------------------qak~~q~q~E~~~~~~~~~ 728 (753)
+++..||-=|.++..||.+|.-.+. --+++|+|+|.-+-..++-
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhcccCC
Confidence 5667777778888888877765543 3345688888877766654
No 38
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=76.48 E-value=51 Score=36.03 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=12.6
Q ss_pred HHHHHhHHHHHhHHHHHHHHHHH
Q 004449 671 KREKKTQMKFQSWEKQKALFQEE 693 (753)
Q Consensus 671 krekk~lkk~qsWEkQK~lLQEE 693 (753)
..-...+..||..|.+++..--+
T Consensus 224 ~~~~~~~~~lQ~lEeeRi~~lK~ 246 (486)
T 3haj_A 224 ENMEQVFEQCQQFEEKRLRFFRE 246 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666554433
No 39
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.19 E-value=8.5 Score=35.39 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.8
Q ss_pred hhhhHhhhhHHHHHHHhhHHHHHHHHH
Q 004449 628 SGQVERANSAVRRLEVENTALRQEMEA 654 (753)
Q Consensus 628 sgQlerAns~vrrLE~EnA~lR~EmEA 654 (753)
..++..++..+..||.+.+.+|.+|+.
T Consensus 74 ~~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 74 ELALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 457888899999999999999999975
No 40
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=76.14 E-value=14 Score=32.69 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=36.4
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 669 VSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEE 720 (753)
Q Consensus 669 v~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~ 720 (753)
+-++++..|++| |.+|++||...+..|..|+.++...++..++++.
T Consensus 34 frqkekEqL~~L------Kkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 34 FRARAKEQLAAL------KKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345666666664 5566899999999999999999999888888765
No 41
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=73.34 E-value=50 Score=29.38 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHH
Q 004449 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (753)
Q Consensus 616 rLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAa 655 (753)
|..+.|.-++.+....+++..-|.-|.-.|..+..|+|.+
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ 63 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555543
No 42
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=72.79 E-value=23 Score=33.40 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=30.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (753)
Q Consensus 637 ~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~ 709 (753)
.+..|+.++.++..|+..-|-...+. .+++..-+++...|++|+.....++.+|+.+|.
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~--------------~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAA--------------QIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544433332 233444455555666666666666666655543
No 43
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=72.53 E-value=52 Score=29.20 Aligned_cols=85 Identities=16% Similarity=0.279 Sum_probs=61.0
Q ss_pred HHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q 004449 621 ENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRK 700 (753)
Q Consensus 621 EnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~K 700 (753)
+..|.+...+=.++-..+..||.+.+.+..|+++....+ ..+-..|.+..+..-.-..|.+-+|+|+..-..+
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~-------~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q 82 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEA-------ERLDQEEAQYQREYSEFKRQQLELDDELKSVENQ 82 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555566778888888888887765533 3445556677777777788999999999999999
Q ss_pred HHHHHHHHHHHH
Q 004449 701 VVQLLQELDQAK 712 (753)
Q Consensus 701 l~~l~qel~qak 712 (753)
+.-.+..|.+.+
T Consensus 83 ~~~~~~qLdkL~ 94 (96)
T 3q8t_A 83 MRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999888888765
No 44
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.42 E-value=59 Score=29.78 Aligned_cols=100 Identities=16% Similarity=0.250 Sum_probs=30.9
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q 004449 609 LEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKA 688 (753)
Q Consensus 609 lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~ 688 (753)
+|.--..|+.|+.....+-+..|..+..-+.+|-..+..|+.|.++.|-.-+--..+..++-.+-... +..+...-.
T Consensus 9 aE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~---l~~~q~~i~ 85 (129)
T 3tnu_B 9 AESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELA---LKDARNKLA 85 (129)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 34445556666666555555555555444444444444444444443322222222333332222222 222333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004449 689 LFQEELVTEKRKVVQLLQELDQA 711 (753)
Q Consensus 689 lLQEELa~EK~Kl~~l~qel~qa 711 (753)
.|.+||..-|..++...+|.+..
T Consensus 86 ~lE~eL~~~r~e~~~ql~EYq~L 108 (129)
T 3tnu_B 86 ELEEALQKAKQDMARLLREYQEL 108 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544444333
No 45
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.81 E-value=56 Score=31.63 Aligned_cols=73 Identities=14% Similarity=0.226 Sum_probs=41.9
Q ss_pred hhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 004449 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQE 692 (753)
Q Consensus 613 T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQE 692 (753)
.+-|-+.+|-.|..+..+++.+...+..||.....++. . ..++..|+.+...|++
T Consensus 11 Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~----l---------------------~~~~~~~~~e~~~L~~ 65 (154)
T 2ocy_A 11 SVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNT----L---------------------KRELSDRDDEVKRLRE 65 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH----H---------------------HTHHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---------------------HHHHhhhhHHHHHHHH
Confidence 34566667777777777777776677666654433322 1 1223446667777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004449 693 ELVTEKRKVVQLLQELDQ 710 (753)
Q Consensus 693 ELa~EK~Kl~~l~qel~q 710 (753)
+|..|+.+-.+..+++.+
T Consensus 66 ~l~~E~~~R~~aE~~~~~ 83 (154)
T 2ocy_A 66 DIAKENELRTKAEEEADK 83 (154)
T ss_dssp HHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 776666554444443333
No 46
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=70.68 E-value=65 Score=29.60 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=6.6
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHH
Q 004449 609 LEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEA 654 (753)
Q Consensus 609 lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEA 654 (753)
+|.--..|+.|+.....+-+..|..+..-+.+|-..+..|+.|.++
T Consensus 11 aE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~ 56 (131)
T 3tnu_A 11 AEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQS 56 (131)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445666666555555554444444444444444444444433
No 47
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=69.39 E-value=6.7 Score=44.35 Aligned_cols=145 Identities=19% Similarity=0.219 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhh---hhhhHHHHHHHHHHhhhhhHh
Q 004449 557 VRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEEN---TMKKLSEMENALCKASGQVER 633 (753)
Q Consensus 557 v~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~---T~KrLsEmEnAL~kasgQler 633 (753)
|+-++.|-+|.+ ++|-|+- .||.+++..=...-++++|.++. -+.+||. ++.-|.+.|.....--.++.+
T Consensus 302 ~qqm~~~a~e~~---~~~~~e~-~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~ 374 (575)
T 2i1j_A 302 VQQMKAQAREEK---LAKQAQR-EKLQLEIAARERAEKKQQEYQDR---LRQMQEEMERSQANLLEAQDMILRLEEQLRQ 374 (575)
T ss_dssp HHHHHHHHHHHH---HHHHHHH-TTCCSCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455555555543 3444444 34666555444444444444443 2333333 445566666666666677778
Q ss_pred hhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 004449 634 ANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSW-------EKQKALFQEELVTEKRKVVQLLQ 706 (753)
Q Consensus 634 Ans~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsW-------EkQK~lLQEELa~EK~Kl~~l~q 706 (753)
|.....+||.+..++..+|+.-++.+.-++..=..+..+-.......... +.+...||+|+..-+....+..+
T Consensus 375 ~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~ 454 (575)
T 2i1j_A 375 LQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAA 454 (575)
T ss_dssp -------------------------------------------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777777766665555544333332222222222222 33445555555555544444444
Q ss_pred HH
Q 004449 707 EL 708 (753)
Q Consensus 707 el 708 (753)
+|
T Consensus 455 ~l 456 (575)
T 2i1j_A 455 AL 456 (575)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 48
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=68.71 E-value=1.6e+02 Score=33.41 Aligned_cols=144 Identities=13% Similarity=0.133 Sum_probs=86.1
Q ss_pred HhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhh
Q 004449 566 EWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVEN 645 (753)
Q Consensus 566 ewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~En 645 (753)
-..||--.+=..+|+| |+...|+|.++++..-.++|..-..|.+=+-+.-.||.-|..+|-+|-+.+-.++.-|
T Consensus 306 ~~qew~~~hp~~~Aer------~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n 379 (551)
T 2b5u_A 306 RQQEWDATHPVEAAER------NYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFA 379 (551)
T ss_dssp HHHHHHHHCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHhhhcCcHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhc
Confidence 3345655555556655 5888899999998887777765556666666666666666666655555555544322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004449 646 TALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNET 725 (753)
Q Consensus 646 A~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~ 725 (753)
-.+ |++= -+-.+.+. .. .+|-+..++. -+.+-..+.+|+.+-+.-|.-..+.-.|.+.-++-.|.+++++
T Consensus 380 ~~p---~~~G-h~~w~~~~--~~-~~~~~~dv~~---~~a~~d~~~~~~s~~~~~ls~~me~Rkq~e~k~k~ae~kl~~e 449 (551)
T 2b5u_A 380 HDP---MAGG-HRMWQMAG--LK-AQRAQTDVNN---KQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRSAENNLNDE 449 (551)
T ss_dssp TCT---TSTH-HHHHHHHH--HH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCh---hhcc-chhhhhcc--ch-hhhhhhhhhh---HHHHHHHHhhcccchhhhhhhhhhcccchhhhhhhhhhccchh
Confidence 210 1111 01111111 11 1222223333 3567777788888888888888877777777777788888886
No 49
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=68.27 E-value=46 Score=36.46 Aligned_cols=84 Identities=8% Similarity=0.114 Sum_probs=52.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHH--------HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 639 RRLEVENTALRQEMEAAKLRAAESAAS---CQEVSKREKKTQMK--------FQSWEKQKALFQEELVTEKRKVVQLLQE 707 (753)
Q Consensus 639 rrLE~EnA~lR~EmEAaKL~A~ES~~s---c~Ev~krekk~lkk--------~qsWEkQK~lLQEELa~EK~Kl~~l~qe 707 (753)
|.++..+..||.+++.-+-.-.++..- ..+++|+..+..+. ....|++.+.||+-+..+=..|..||..
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKN 142 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455555555555555444433333322 22233322222221 2367888888898888888888888888
Q ss_pred HHHHHHHHHHHHHhh
Q 004449 708 LDQAKALQEQLEEMS 722 (753)
Q Consensus 708 l~qak~~q~q~E~~~ 722 (753)
|+....-.+.+|..|
T Consensus 143 l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 143 VRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888888887
No 50
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=68.20 E-value=89 Score=30.19 Aligned_cols=103 Identities=14% Similarity=0.216 Sum_probs=53.5
Q ss_pred HHHHHHHhhhhhHhhhhHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHhHHHHHHHHHH
Q 004449 620 MENALCKASGQVERANSAVRRLEVENTALR---QEMEAAKLRAAESAASCQ----EVSKREKKTQMKFQSWEKQKALFQE 692 (753)
Q Consensus 620 mEnAL~kasgQlerAns~vrrLE~EnA~lR---~EmEAaKL~A~ES~~sc~----Ev~krekk~lkk~qsWEkQK~lLQE 692 (753)
+|..|.+|.-.++.|.+.++.||.+.-..- +-||++--.+++-...+. .+..+-|..-.|..-=|+.-.+||.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899998888888888888887765432 234444333333222222 2222333333444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004449 693 ELVTEKRKVVQLLQELDQAKALQEQLEEMSNET 725 (753)
Q Consensus 693 ELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~ 725 (753)
+|..-..+|. .+-.+.+.+++.+...+++-
T Consensus 106 ~id~lEd~L~---~~Kek~~~i~~eLd~tl~el 135 (155)
T 2efr_A 106 SIDDLEDELY---AQKLKYKAISEEMKQLEDKV 135 (155)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 5544443332 22233334444444444443
No 51
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=67.77 E-value=1e+02 Score=30.58 Aligned_cols=11 Identities=9% Similarity=0.304 Sum_probs=6.6
Q ss_pred cCCccccCcch
Q 004449 729 SDPWRYDYNAC 739 (753)
Q Consensus 729 ~~~~~~~~~~~ 739 (753)
.-||.|.|..|
T Consensus 282 ~~p~~~~fe~~ 292 (305)
T 2efl_A 282 EPPGDIEFEDY 292 (305)
T ss_dssp CCCCCCCCCCC
T ss_pred CCCCCCCCcCC
Confidence 45777766544
No 52
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=67.43 E-value=38 Score=29.35 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHH
Q 004449 598 EVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (753)
Q Consensus 598 E~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAa 655 (753)
|++.||..+..|| .+|.|+|.-. ..|++..+..+-.||.+.+.+|.+|+.-
T Consensus 4 eie~L~~q~~~Le----~~l~e~E~~~---~~~l~~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 4 QLSQLQCQLAAKE----AKLRDLEDSL---ARERDTSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp --------CTTHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555664 4577888854 5689999999999999999999999754
No 53
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=65.83 E-value=16 Score=31.57 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=40.5
Q ss_pred HHHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 678 MKFQSWEKQKALFQEELVT------EKRKVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 678 kk~qsWEkQK~lLQEELa~------EK~Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
.++...|.+...|+++|++ --.++..|+++++++++..++.+.+|-|
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWee 81 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEY 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999975 3578999999999999999999999964
No 54
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=65.80 E-value=22 Score=39.06 Aligned_cols=29 Identities=24% Similarity=0.223 Sum_probs=16.9
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHH
Q 004449 610 EENTMKKLSEMENALCKASGQVERANSAVRRLE 642 (753)
Q Consensus 610 Ee~T~KrLsEmEnAL~kasgQlerAns~vrrLE 642 (753)
|.+.-|.|.+||+.|. ||+...+.|..|-
T Consensus 33 e~~V~~~l~~LE~~l~----elsn~ts~v~~Lv 61 (409)
T 1m1j_C 33 RLTTDGELLEIEGLLQ----QATNSTGSIEYLI 61 (409)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HhcchhHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4555677777777776 3444444444443
No 55
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=65.63 E-value=62 Score=36.49 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=9.6
Q ss_pred HHHhhHHHHHHHHHHHH
Q 004449 641 LEVENTALRQEMEAAKL 657 (753)
Q Consensus 641 LE~EnA~lR~EmEAaKL 657 (753)
++.||+.||+.=++||-
T Consensus 46 i~aeNeaikkrNa~aka 62 (497)
T 3iox_A 46 LTAENTAIKKRNADAKA 62 (497)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666655555543
No 56
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=65.44 E-value=71 Score=36.39 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=14.5
Q ss_pred CcccccCCC-----CchhHHHHHHhHHHHHHHHHH
Q 004449 535 TSLEHLVPQ-----DKRDEIILKLIPRVRELHNQL 564 (753)
Q Consensus 535 ~~l~~~VP~-----D~KDEmilkLv~rv~eLq~ql 564 (753)
++||.--|- +-=|+.=.+|-.||.||.++|
T Consensus 39 eDwGvkCPSGCrLQglLdkqErDltkrINELKnqL 73 (562)
T 3ghg_A 39 EDWNYKCPSGCRMKGLIDEVNQDFTNRINKLKNSL 73 (562)
T ss_dssp SSBTTEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCcccchhhhHHhhcCcHHHHHHHHHHHH
Confidence 566665553 223333444455555554444
No 57
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=65.43 E-value=85 Score=34.09 Aligned_cols=37 Identities=27% Similarity=0.405 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccCCccccCcchhhhcc
Q 004449 702 VQLLQELDQAKALQEQLEEMSNETALISDPWRYDYNACWFQQS 744 (753)
Q Consensus 702 ~~l~qel~qak~~q~q~E~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (753)
..+++|+..++...+++|.+ .|.+|| ||-+.|+++=.
T Consensus 97 ~~a~~e~~~l~~~l~~le~~----~ll~~~--~D~~naileI~ 133 (365)
T 1gqe_A 97 NEAVAELDALEEKLAQLEFR----RMFSGE--YDSADCYLDIQ 133 (365)
T ss_dssp HHHHHHHHHHHHHHHHHGGG----GGCCST--TTTSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH----HccCCc--ccccceEEEEE
Confidence 44566666666666666653 367887 68888877543
No 58
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=64.87 E-value=47 Score=28.68 Aligned_cols=72 Identities=8% Similarity=0.113 Sum_probs=48.5
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHhhhhhhhh--hhH------HHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 585 DKAELKTLRQEKEEVERLKKEKQILEENTM--KKL------SEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 585 dk~ELksLR~EkEE~erlkKeKq~lEe~T~--KrL------sEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
=...+..|..++.|++...+|-..|++++. +.+ ...+.|+..-...++.....+.+|+.+...++.+|+..|
T Consensus 20 l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 20 ISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677888888899999999999988752 110 123344444444555555778888888888888877655
No 59
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=64.80 E-value=54 Score=27.89 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHhhhhhHhhhhHHHHHHHh
Q 004449 614 MKKLSEMENALCKASGQVERANSAVRRLEVE 644 (753)
Q Consensus 614 ~KrLsEmEnAL~kasgQlerAns~vrrLE~E 644 (753)
.||+.-|++-+.+|..+++.++.-++..|..
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~ 35 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEER 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666555555533
No 60
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=64.10 E-value=1.1e+02 Score=29.95 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=35.0
Q ss_pred HHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 591 TLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 591 sLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
.||.|-|-+.|+||---.+ .|.++..|-+++-....+....+.--.||-+.+.|.++.+.-+
T Consensus 21 kLk~EsE~~~rlkK~~tEl----~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr 82 (168)
T 3o0z_A 21 LLRTESDTAVRLRKSHTEM----SKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAER 82 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888887633222 2334444444444444444444444556666766666666655
No 61
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=62.46 E-value=16 Score=37.10 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004449 691 QEELVTEKRKVVQLLQELDQAKALQEQLEEM 721 (753)
Q Consensus 691 QEELa~EK~Kl~~l~qel~qak~~q~q~E~~ 721 (753)
+.|+..-+..+...+.+++.++...++.++.
T Consensus 113 ~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~ 143 (341)
T 3fpp_A 113 QQDLDNAATEMAVKQAQIGTIDAQIKRNQAS 143 (341)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333333
No 62
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=62.44 E-value=32 Score=38.52 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHhhhhhHh
Q 004449 615 KKLSEMENALCKASGQVER 633 (753)
Q Consensus 615 KrLsEmEnAL~kasgQler 633 (753)
.++.++....+++..++|.
T Consensus 70 ~~~~~ld~~~r~~~~~~~~ 88 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRS 88 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555544444433
No 63
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=61.90 E-value=58 Score=27.08 Aligned_cols=67 Identities=22% Similarity=0.285 Sum_probs=42.1
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 588 ELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 588 ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
.|..+|.+-|+. ..|-++.+|.--..|+.|+.....+-+..|..+..-+.+|...+..|..|+++.|
T Consensus 10 il~eiRaQYE~i--a~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 10 AMRDVRQQYESV--AAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355666666655 3345556677777788888777777666666666666555555555555555543
No 64
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=60.91 E-value=11 Score=32.35 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=35.3
Q ss_pred HHHhHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhcc
Q 004449 210 ILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMD 248 (753)
Q Consensus 210 SL~GLVafLrs~fP~LS~~DAmwyLLlADaDLl~A~am~ 248 (753)
-|..+|..++..||+|..+-+..||.-.+-|+..+|..-
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~L 50 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNI 50 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 366899999999999999999999999999999988754
No 65
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=59.94 E-value=92 Score=27.47 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 689 LFQEELVTEKRKVVQLLQELDQAKALQE 716 (753)
Q Consensus 689 lLQEELa~EK~Kl~~l~qel~qak~~q~ 716 (753)
.|++|+..-...+..+++.|+.+.....
T Consensus 55 ~lE~eld~~~e~l~~a~~kLe~~ek~~~ 82 (101)
T 3u59_A 55 GTEDEVEKYSESVKEAQEKLEQAEKKAT 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 66
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=59.01 E-value=2.2e+02 Score=32.84 Aligned_cols=153 Identities=14% Similarity=0.135 Sum_probs=77.0
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHhhH----------------------HHHHHHHH-HHHHhhhcHHHHH---------
Q 004449 543 QDKRDEIILKLIPRVRELHNQLHEWTE----------------------WANQKVMQ-AARRLSKDKAELK--------- 590 (753)
Q Consensus 543 ~D~KDEmilkLv~rv~eLq~qlqewtd----------------------WAnqKvMQ-AarRL~kdk~ELk--------- 590 (753)
.++|+++|...+.++.++.+++...-+ |++.=-.+ ...+|.+-...|.
T Consensus 377 ~e~k~~lvr~~~~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~lP~~l~~~~~~i~~~~g~~~l~~~~~~l~~l~~~~~~~ 456 (704)
T 2xs1_A 377 NQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREI 456 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHCSSTTSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHhcCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999988888765432 33221110 0122222222333
Q ss_pred ------HHHHhHHHHHHHHHHHhh---------hhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHH---HHH
Q 004449 591 ------TLRQEKEEVERLKKEKQI---------LEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALR---QEM 652 (753)
Q Consensus 591 ------sLR~EkEE~erlkKeKq~---------lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR---~Em 652 (753)
.|.+|.+|-++++..-.. +=.+=++++.+++.+|.+|+.=-+.....++.-+.....|. .|+
T Consensus 457 L~e~~~~L~~E~~ed~~~R~k~g~~w~r~~S~~~~~~l~~~~~~~~~~l~~A~~sD~~v~~~~~~~~~~l~~L~~~~~~l 536 (704)
T 2xs1_A 457 LDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPEL 536 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 344444444444332111 11123677888888888886432222222222222333332 123
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q 004449 653 EAA--KLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (753)
Q Consensus 653 EAa--KL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~ 696 (753)
+++ +.+. .+.....++.++-+..+.++...+.|+..+.+||..
T Consensus 537 ~~~~p~~~~-~~~~~~~~~~~~L~~~l~~l~~l~~~R~~~~~~lk~ 581 (704)
T 2xs1_A 537 NAAIPSANP-AKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKS 581 (704)
T ss_dssp HHTSCCCCC-CGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCccCCC-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 321 1000 011112245666777888888888888888777643
No 67
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=58.86 E-value=1.1e+02 Score=34.60 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=35.4
Q ss_pred hhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 004449 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRA 659 (753)
Q Consensus 613 T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A 659 (753)
.+-+++-.|+++...+.||.+.+...+..+-...++.+|.+.++-++
T Consensus 361 ArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~ 407 (602)
T 1cii_A 361 ARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQL 407 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567788888888888888888888887777777777777764444
No 68
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=58.20 E-value=22 Score=28.68 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=35.5
Q ss_pred HHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 671 KREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (753)
Q Consensus 671 krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~ 713 (753)
+|...++..+..-|+|-+.|.|-|= +++|++|.++|+++++
T Consensus 6 rrr~e~ld~l~~LEkqF~~LkEqlY--~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 6 RRRSECVSEMLDLEKQFSELKEKLF--RERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHc
Confidence 7888999999999999999999885 5579999999998764
No 69
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=58.11 E-value=9.3 Score=39.20 Aligned_cols=37 Identities=14% Similarity=0.323 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHH
Q 004449 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALR 649 (753)
Q Consensus 613 T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR 649 (753)
+...|.+.+.++..+..+++.+.+.++.++.+...++
T Consensus 113 s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~ 149 (369)
T 4dk0_A 113 SLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAE 149 (369)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777766666666655555554444333
No 70
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=57.04 E-value=1e+02 Score=27.15 Aligned_cols=11 Identities=27% Similarity=0.585 Sum_probs=5.7
Q ss_pred HHHHHHhHHHH
Q 004449 589 LKTLRQEKEEV 599 (753)
Q Consensus 589 LksLR~EkEE~ 599 (753)
+.+||.|+|.+
T Consensus 11 m~~lk~e~e~a 21 (101)
T 3u59_A 11 MQMLKLDKENA 21 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 71
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=56.56 E-value=60 Score=28.42 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHH
Q 004449 619 EMENALCKASGQVERANSAVRRLEVENTALRQEMEA 654 (753)
Q Consensus 619 EmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEA 654 (753)
+.+..+.....+++..+....+++.++..+++.++-
T Consensus 7 ~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 7 ELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444455555666666666665543
No 72
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=56.19 E-value=54 Score=29.69 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred hhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 630 QVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (753)
Q Consensus 630 QlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~ 709 (753)
+++++.-.+++|+.+++. |+.+...|+++|..|+.+-....+++.
T Consensus 6 ~~e~lre~l~~le~~~~~-----------------------------------~~~e~~~L~~~l~eE~~~R~~aE~~~~ 50 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSD-----------------------------------RDDEVKRLREDIAKENELRTKAEEEAD 50 (97)
T ss_dssp CHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-----------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhcc
Q 004449 710 QAKALQEQLEEMSNETA 726 (753)
Q Consensus 710 qak~~q~q~E~~~~~~~ 726 (753)
++.+--+.+=+-+=++|
T Consensus 51 ~ie~ElEeLTasLFeEA 67 (97)
T 2eqb_B 51 KLNKEVEDLTASLFDEA 67 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 73
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=54.95 E-value=25 Score=35.97 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 004449 700 KVVQLLQELDQAKALQEQLEEMSNE 724 (753)
Q Consensus 700 Kl~~l~qel~qak~~q~q~E~~~~~ 724 (753)
.+..++.++.+++...++++..+..
T Consensus 130 ~~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 130 EMDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444544444444444433
No 74
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=53.90 E-value=1.3e+02 Score=27.49 Aligned_cols=84 Identities=19% Similarity=0.185 Sum_probs=47.0
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 636 SAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQ 715 (753)
Q Consensus 636 s~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q 715 (753)
....+|..|...|..++++-+=..++...-|..+.++....-.++.-.+....-..+....--.+-..+++++...+...
T Consensus 41 ~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 41 EKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777766777777777776666665555555554444443333333333333444444444444
Q ss_pred HHHH
Q 004449 716 EQLE 719 (753)
Q Consensus 716 ~q~E 719 (753)
+..|
T Consensus 121 ed~e 124 (129)
T 2fxo_A 121 DDLE 124 (129)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 75
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=52.96 E-value=1.1e+02 Score=26.25 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHH
Q 004449 599 VERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (753)
Q Consensus 599 ~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAa 655 (753)
++-+|..+..||. .|.|+|.-. ..++..++..+..||.+.+.+|.+|+.-
T Consensus 3 l~~l~~~~~sLE~----~l~e~e~~~---~~~~~~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 3 VDALKGTNESLER----QMREMEENF---AVEAANYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555553 356666655 4578888999999999999999999754
No 76
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=52.67 E-value=46 Score=32.96 Aligned_cols=63 Identities=16% Similarity=0.366 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHh
Q 004449 554 IPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKA 627 (753)
Q Consensus 554 v~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~ka 627 (753)
++.+++++.++..+..+|. .|-.-.+.|.. .|..++.+=.+-+.|+..=+++..+|..+|..-
T Consensus 61 l~~~q~~~~~~e~l~s~ae--------~ll~l~~~Le~---~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~ 123 (192)
T 2p22_C 61 FNPLTDFAGKIHAFRDQFK--------QLEENFEDLHE---QKDKVQALLENARILESKYVASWQDYHSEFSKK 123 (192)
T ss_dssp GSCCHHHHHHHHHHHHHHH--------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHH--------HHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567888888887744443 33222233444 444444555567777888899999998888443
No 77
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=52.07 E-value=46 Score=36.65 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=23.0
Q ss_pred HHHHHHhHHHHHHHHHHHhhhh-hhhhhhHHHHHHHHHHhhhhhHh
Q 004449 589 LKTLRQEKEEVERLKKEKQILE-ENTMKKLSEMENALCKASGQVER 633 (753)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lE-e~T~KrLsEmEnAL~kasgQler 633 (753)
++-+|...|.+.+--+-+...+ .....++.++...-++...++|.
T Consensus 4 ~~~~r~n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~ 49 (455)
T 2dq0_A 4 IKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINR 49 (455)
T ss_dssp HHHHHHCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777655444333212 22345555555555555554443
No 78
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=52.03 E-value=1.2e+02 Score=27.17 Aligned_cols=103 Identities=10% Similarity=0.145 Sum_probs=0.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q 004449 607 QILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQ 686 (753)
Q Consensus 607 q~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQ 686 (753)
+.|=+-..++..+...+|..+..+++.+...+..|+....+.+.++...--... ++.. +..|..-
T Consensus 11 ~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~-~~~~--------------l~~~~~f 75 (150)
T 3ajw_A 11 ETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGI-ASNR--------------WINYQQF 75 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGG-GHHH--------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CHHH--------------HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhh
Q 004449 687 KALFQEELVTEKRKVVQLLQELDQAKAL--QEQLEEMSNE 724 (753)
Q Consensus 687 K~lLQEELa~EK~Kl~~l~qel~qak~~--q~q~E~~~~~ 724 (753)
...|.+.|...+..|..++++++++++. +...+.+.-|
T Consensus 76 i~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e 115 (150)
T 3ajw_A 76 IQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQ 115 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 79
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=52.01 E-value=1.2e+02 Score=28.14 Aligned_cols=33 Identities=9% Similarity=0.244 Sum_probs=17.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 678 MKFQSWEKQKALFQEELVTEKRKVVQLLQELDQ 710 (753)
Q Consensus 678 kk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~q 710 (753)
.+.+..+-|-....++..+|+.--..++.+.++
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~ 94 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEY 94 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHH
Confidence 345555555555555555555554444444433
No 80
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=50.63 E-value=11 Score=38.44 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=26.5
Q ss_pred hhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHH
Q 004449 582 LSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLE 642 (753)
Q Consensus 582 L~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE 642 (753)
|..-+++|...+.+.+..++|.+.. --+...+.+.+.++..+..|++.+.+.+..++
T Consensus 85 l~~a~~~~~~a~~~~~r~~~L~~~~----~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~ 141 (341)
T 3fpp_A 85 RQQAEAELKLARVTYSRQQRLAQTQ----AVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQ 141 (341)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTS----SSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555544444442221 11344555555555555555555544444433
No 81
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=50.45 E-value=14 Score=29.81 Aligned_cols=28 Identities=36% Similarity=0.476 Sum_probs=22.9
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhh
Q 004449 611 ENTMKKLSEMENALCKASGQVERANSAVRRLEVEN 645 (753)
Q Consensus 611 e~T~KrLsEmEnAL~kasgQlerAns~vrrLE~En 645 (753)
.+++|++.|+|.-|+|+.. .+.+||-||
T Consensus 10 v~~Rkk~eeler~lrk~kk-------~iKklEdeN 37 (50)
T 1a92_A 10 VSGRKKLEELERDLRKLKK-------KIKKLEEDN 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHhhhccC
Confidence 4689999999999998766 677888776
No 82
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=50.40 E-value=1.3e+02 Score=26.57 Aligned_cols=64 Identities=28% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 638 VRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQ 717 (753)
Q Consensus 638 vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q 717 (753)
||-||.+|+.|..+.+.-+=+..-...+ +.+.||..-+.+|..+..+-+++.-..+.
T Consensus 25 VR~LEqqN~~Le~~i~~l~~~~~~~~~~-----------------------~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 25 VRFLEQQNKILLAELEQLKGQGKSRLGD-----------------------LYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhh
Q 004449 718 LEEMSNE 724 (753)
Q Consensus 718 ~E~~~~~ 724 (753)
+.+...+
T Consensus 82 l~~~~~~ 88 (93)
T 3s4r_A 82 LAEDIMR 88 (93)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 83
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=50.38 E-value=44 Score=26.81 Aligned_cols=32 Identities=28% Similarity=0.319 Sum_probs=27.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 680 FQSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (753)
Q Consensus 680 ~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qa 711 (753)
.+--||+-..|.+||..+|.|...++++|.|+
T Consensus 14 V~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 14 VARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44557788899999999999999999999885
No 84
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=50.01 E-value=1.6e+02 Score=30.08 Aligned_cols=66 Identities=24% Similarity=0.260 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhh------------hHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004449 598 EVERLKKEKQILEENTMKKLSEMENALCKASGQ------------VERANSAVRRLEVENTALRQEMEAAKLRAAESA 663 (753)
Q Consensus 598 E~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQ------------lerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~ 663 (753)
|-+++++-|+.||+.=|+|++++-....-|..| .+|=...|.-||.|.+.-|+++++.=+.-++..
T Consensus 26 EH~~f~~Ak~rLe~~hr~k~~~VmkEW~eae~q~k~lpkadkk~m~~rFQ~~v~aLE~E~~~ErqqL~etH~~RV~a~ 103 (219)
T 3pmr_A 26 EHEGFLRAKMDLEERRMRQINEVMREWAMADNQSKNLPKADRQALNEHFQSILQTLEEQVSGERQRLVETHATRVIAL 103 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888877766655555544 345556778899999999998887766655543
No 85
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=49.37 E-value=17 Score=29.84 Aligned_cols=38 Identities=13% Similarity=-0.091 Sum_probs=33.2
Q ss_pred hHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhccCC
Q 004449 213 ELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMDGD 250 (753)
Q Consensus 213 GLVafLrs~fP~LS~~DAmwyLLlADaDLl~A~am~~~ 250 (753)
.-+..|++.||.++....-.-|..++.|+..||.+-..
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 56788999999999999888888999999999987643
No 86
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=49.32 E-value=1.5e+02 Score=26.85 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=37.2
Q ss_pred hhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 629 GQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLL 705 (753)
Q Consensus 629 gQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~ 705 (753)
.||-||.-..|+-|++-+-+. .++-...+-+++||.- -|-|.++-..||.||++-++||-...
T Consensus 25 ~qLT~Aq~~l~~~eaQAaTCN-----------qTV~tL~~SL~kekaq---~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 25 RQLTRTQDSLLQAETQANSCN-----------LTVVTLQESLEKKVSQ---ALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666655555444433333 3344445555555543 34456677788888888888776554
No 87
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=49.25 E-value=1.3e+02 Score=26.07 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR 658 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~ 658 (753)
+.+..|+-.|.++...+++.......||..+..|-.|...--++
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777888888777778887777776666554444
No 88
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=49.25 E-value=2.1e+02 Score=28.31 Aligned_cols=45 Identities=13% Similarity=0.293 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH-HhhhcHHHHHHHHHhHHHH
Q 004449 555 PRVRELHNQLHEWTEWANQKVMQAAR-RLSKDKAELKTLRQEKEEV 599 (753)
Q Consensus 555 ~rv~eLq~qlqewtdWAnqKvMQAar-RL~kdk~ELksLR~EkEE~ 599 (753)
.|.+.++..+++-.+|-.++--+... -.++|+++.+.|-++++..
T Consensus 3 ~~~~~F~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~~l 48 (322)
T 1u4q_A 3 NKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLL 48 (322)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHH
Confidence 36778888899999998886655432 3678899988888877754
No 89
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=48.98 E-value=49 Score=30.02 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=15.6
Q ss_pred hhhHHHHHHHhhHHHHHHHHHHHH
Q 004449 634 ANSAVRRLEVENTALRQEMEAAKL 657 (753)
Q Consensus 634 Ans~vrrLE~EnA~lR~EmEAaKL 657 (753)
|..+.+..+.+...|++|+|.-|.
T Consensus 66 a~~a~~~~~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 66 TSVARQRLREDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777777776553
No 90
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=48.10 E-value=1.8e+02 Score=32.79 Aligned_cols=54 Identities=31% Similarity=0.347 Sum_probs=28.0
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhh----------------hhhhhHHHHHHHHHHhhhhhHhhhhHHHHHH
Q 004449 589 LKTLRQEKEEVERLKKEKQILEE----------------NTMKKLSEMENALCKASGQVERANSAVRRLE 642 (753)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lEe----------------~T~KrLsEmEnAL~kasgQlerAns~vrrLE 642 (753)
||.||+|-|-.-|-+.|||.-.+ .-.++-.+-|..|.+|-=.|+.|..+|..|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~k~~~e~dLa~A~PaL~~A~~AL~~L~ 73 (536)
T 3err_A 4 LKRLRQEPEVFHRAIREKGVALDLEALLAVDEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIK 73 (536)
T ss_dssp HHHHHSCHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHhhhcChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 56666666666555555543221 1122333444555555555666666665554
No 91
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=47.67 E-value=1e+02 Score=29.53 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEME-AAKLRAAESAASCQEVSKREKKTQMKFQSWEKQ 686 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmE-AaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQ 686 (753)
.+|-+..+.|+++..+||| .+++||.+-..+..++. |+|-...+.+.-...-+-|.++...+|.....|
T Consensus 10 e~lr~~~~~L~~~~r~Ldr---~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~ 79 (179)
T 2gd5_A 10 ELVNEWSLKIRKEMRVVDR---QIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAH 79 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778889999999998 45555555555555443 333333444444444444445555555544333
No 92
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=47.48 E-value=1.9e+02 Score=31.77 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 004449 704 LLQELDQAKALQEQLEEMSNET 725 (753)
Q Consensus 704 l~qel~qak~~q~q~E~~~~~~ 725 (753)
++..+++.++...+++.+..+.
T Consensus 117 ~~~~i~~l~~~i~~l~~~~~~~ 138 (409)
T 1m1j_C 117 NSNKITQLKQKIAQLESHCQEP 138 (409)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSC
T ss_pred hHHHHHHHHHHHHHHHHHhhcc
Confidence 3333444444444555555443
No 93
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=47.31 E-value=2.1e+02 Score=27.79 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHH
Q 004449 617 LSEMENALCKASGQVERANSAVRRLEVENTAL 648 (753)
Q Consensus 617 LsEmEnAL~kasgQlerAns~vrrLE~EnA~l 648 (753)
+..+--++--..-|+..++...++|+.||..|
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666777777777777777655
No 94
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=47.09 E-value=99 Score=26.95 Aligned_cols=73 Identities=14% Similarity=0.241 Sum_probs=48.6
Q ss_pred hcHHHHHHHHHhHHHHHHHHHHHhhhhhhhh--hhH------HHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHH
Q 004449 584 KDKAELKTLRQEKEEVERLKKEKQILEENTM--KKL------SEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (753)
Q Consensus 584 kdk~ELksLR~EkEE~erlkKeKq~lEe~T~--KrL------sEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAa 655 (753)
.=...+..|..++.|++...+|-..|++.+. +-+ ...+.|+..-...++.....+.+|+.+...++.+|+..
T Consensus 24 ~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 24 LVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677788888888888899999987752 111 13344444445555566677777777777777777765
Q ss_pred H
Q 004449 656 K 656 (753)
Q Consensus 656 K 656 (753)
|
T Consensus 104 k 104 (117)
T 2zqm_A 104 T 104 (117)
T ss_dssp H
T ss_pred H
Confidence 4
No 95
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.68 E-value=1.6e+02 Score=28.09 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=52.0
Q ss_pred HhhhcHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 004449 581 RLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAA 660 (753)
Q Consensus 581 RL~kdk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ 660 (753)
.|+.-+..++.|=..+++..+++++. +..+..+.+...++.+....-...|.++..|..|+|- |.|
T Consensus 16 ~l~~~~~~~~~le~l~~~l~~l~~~l-----------~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~--LTa- 81 (135)
T 2e7s_A 16 TIASQKAAIENYNQLKEDYNTLKREL-----------SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED--LTA- 81 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-----------TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHH--HHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-
Confidence 34444444444444444455554443 3333334444555555555555566666666666653 222
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 661 ESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (753)
Q Consensus 661 ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~ 714 (753)
.=+-|+=+---..-+.-..-|+.-..|++.|.+-...|.-+|.+|...|..
T Consensus 82 ---sLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 82 ---SLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp ---HHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-------------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222333344555666677777777777777777777665543
No 96
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=43.97 E-value=60 Score=31.92 Aligned_cols=41 Identities=17% Similarity=0.000 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 004449 686 QKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMSNETA 726 (753)
Q Consensus 686 QK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~ 726 (753)
+.+.-+.|+..-+..+.+.+.++++++...++++..+....
T Consensus 92 ~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~ 132 (277)
T 2f1m_A 92 TQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTK 132 (277)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCE
Confidence 34444566666666666666666666666666666555443
No 97
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=42.86 E-value=1.4e+02 Score=33.71 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRLEVENTAL 648 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~l 648 (753)
+||.+--|.|.++..-|...++.|-++..|.-..
T Consensus 356 QRlddArNEItsaeSaInslqaqvSa~t~e~k~A 389 (602)
T 1cii_A 356 QRLLDARNKITSAESAVNSARNNLSARTNEQKHA 389 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666665555555555544333
No 98
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=42.65 E-value=1.9e+02 Score=26.06 Aligned_cols=64 Identities=20% Similarity=0.313 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q 004449 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQ 691 (753)
Q Consensus 614 ~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQ 691 (753)
+|.-.|+|++|..-.+|-+.-|-.++.|+..+-+.=+-++--||---+-.. |+--.||.|+.|.
T Consensus 24 ~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~--------------RLsKtEKDkAiLE 87 (101)
T 1d7m_A 24 IKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEA--------------RLAKTEKDRAILE 87 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH--------------HHhhhhhHHHHHH
Confidence 555677888888888888888888888888887766666655554333221 3555678888775
No 99
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=42.08 E-value=53 Score=35.75 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=18.0
Q ss_pred HHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHH
Q 004449 551 LKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERL 602 (753)
Q Consensus 551 lkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erl 602 (753)
-.|..|..||+.+|.+=.=|.+++ .+++|+++..+|+.+=..-++.++.
T Consensus 20 ~~~~~r~~el~~~l~~p~~~~d~~---~~~~~~ke~~~l~~~v~~~~~~~~~ 68 (371)
T 1zbt_A 20 QAVEDRYEELGELLSDPDVVSDTK---RFMELSREEANSRETVAVYREYKQV 68 (371)
T ss_dssp HHHHHHHHHC-----------------------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcchhCHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999988898864 4456777777766544443333333
No 100
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=41.57 E-value=79 Score=27.76 Aligned_cols=45 Identities=27% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhh
Q 004449 679 KFQSWEKQKALFQEELVTEKRKVVQ--------------LLQELDQAKALQEQLEEMSN 723 (753)
Q Consensus 679 k~qsWEkQK~lLQEELa~EK~Kl~~--------------l~qel~qak~~q~q~E~~~~ 723 (753)
|+|.-=.--.+||.||.+.|.|-.. |.++.+|.++-+...+.+++
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
No 101
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=39.93 E-value=1.1e+02 Score=29.56 Aligned_cols=13 Identities=38% Similarity=0.296 Sum_probs=4.8
Q ss_pred hhhhcccccCCcc
Q 004449 721 MSNETALISDPWR 733 (753)
Q Consensus 721 ~~~~~~~~~~~~~ 733 (753)
++.|..-|+|.-|
T Consensus 105 KLeEekQIseASR 117 (146)
T 2xnx_M 105 KLEEEKQISDASR 117 (146)
T ss_dssp HHGGGTTTC----
T ss_pred HHHHHHHHhHHHH
Confidence 3455555665433
No 102
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=39.91 E-value=2.4e+02 Score=26.42 Aligned_cols=37 Identities=30% Similarity=0.436 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHH
Q 004449 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQ 650 (753)
Q Consensus 614 ~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~ 650 (753)
.|++.|++..|..-..+|..|-+.|.||..+|-.+..
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 3456677777776666666666666666655554433
No 103
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=39.88 E-value=19 Score=37.31 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=32.5
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 672 REKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (753)
Q Consensus 672 rekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak 712 (753)
|-+.....+...+.|-.+|.++|..-+++|.+|++|+++.+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445566778888888899999999999999999888764
No 104
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=39.00 E-value=2.1e+02 Score=25.38 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=15.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 678 MKFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (753)
Q Consensus 678 kk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~ 709 (753)
+|++..|.+...+++.|..-+.|+-.-.+...
T Consensus 51 kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 51 KQLRVTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544444444333
No 105
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.32 E-value=35 Score=28.76 Aligned_cols=40 Identities=8% Similarity=-0.094 Sum_probs=34.1
Q ss_pred HHHHhHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhcc
Q 004449 209 YILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMD 248 (753)
Q Consensus 209 RSL~GLVafLrs~fP~LS~~DAmwyLLlADaDLl~A~am~ 248 (753)
..+...|..|++.||.+......|-|..++.|+..||..-
T Consensus 16 ~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~L 55 (67)
T 2dhy_A 16 LEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQL 55 (67)
T ss_dssp CCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3345677889999999999999999999999999998753
No 106
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=35.71 E-value=2.5e+02 Score=25.38 Aligned_cols=27 Identities=33% Similarity=0.332 Sum_probs=11.8
Q ss_pred hhHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 630 QVERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 630 QlerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
||..+..+.-.++-+..+|..+|+-++
T Consensus 16 qL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 16 QVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444
No 107
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=35.04 E-value=57 Score=32.27 Aligned_cols=31 Identities=26% Similarity=0.258 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 682 SWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (753)
Q Consensus 682 sWEkQK~lLQEELa~EK~Kl~~l~qel~qak 712 (753)
.-+++-..|++||..+|.|-..++++|.|.=
T Consensus 139 kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl 169 (175)
T 3mud_A 139 KNEKSIDDLEEKVAHAKEENLNMHQMLDQTL 169 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788999999999999999999998763
No 108
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=34.95 E-value=2.8e+02 Score=28.20 Aligned_cols=66 Identities=23% Similarity=0.310 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhh------------hHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004449 598 EVERLKKEKQILEENTMKKLSEMENALCKASGQ------------VERANSAVRRLEVENTALRQEMEAAKLRAAESA 663 (753)
Q Consensus 598 E~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQ------------lerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~ 663 (753)
|-+++++-|+.||+.=|+|.+++-....-|-.| .++=...|.-||.|.+.-|+++++.=+.-++..
T Consensus 19 EH~~f~~Ak~~Le~~hr~k~~~VmkEW~eae~q~k~l~kadkk~~~~rFQ~~v~aLE~E~~~ErqqL~etH~qRV~a~ 96 (211)
T 3umh_A 19 EHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAM 96 (211)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 345688888889998888888876666655554 344556788899999999999888766655543
No 109
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=33.80 E-value=1e+02 Score=33.42 Aligned_cols=41 Identities=22% Similarity=0.147 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccCCccccCcchhhhcc
Q 004449 702 VQLLQELDQAKALQEQLEEMSNETALISDPWRYDYNACWFQQS 744 (753)
Q Consensus 702 ~~l~qel~qak~~q~q~E~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (753)
..+.+|+..++...+++|..+.--.|-+|| ||.+.|+++=.
T Consensus 72 ~~a~~e~~~l~~~~~~le~~l~~lLlp~~~--~D~~n~ileI~ 112 (354)
T 3d5a_X 72 EMAKAEREALLARKEALEKELERHLLPKDP--MDERDAIVEIR 112 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCC--CCCCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--ccccceEEEEE
Confidence 345667777777777777777665666888 78888877543
No 110
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=33.18 E-value=4.9e+02 Score=28.01 Aligned_cols=33 Identities=6% Similarity=0.186 Sum_probs=23.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (753)
Q Consensus 679 k~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qa 711 (753)
+++.....|.+|+++|..++...-++.+++..+
T Consensus 213 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 245 (373)
T 3hhm_B 213 RISEIIDSRRRLEEDLKKQAAEYREIDKRMNSI 245 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455567778888888888777777777766644
No 111
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=33.13 E-value=3e+02 Score=25.48 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=17.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 680 FQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (753)
Q Consensus 680 ~qsWEkQK~lLQEELa~EK~Kl~~l~qel~ 709 (753)
|++=..-+.++++|+..-...|..||+++.
T Consensus 78 F~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 78 FQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444344455566666666666666666654
No 112
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=32.76 E-value=1.6e+02 Score=31.56 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhh-----HHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHH
Q 004449 596 KEEVERLKKEKQILEENTMKK-----LSEMENALCKASGQVERANSAVRRLEVENTALRQEM 652 (753)
Q Consensus 596 kEE~erlkKeKq~lEe~T~Kr-----LsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~Em 652 (753)
+++++.|++.++.-.++|-+| |+ -=.||.-+..||...-+...+|+.+...|++-|
T Consensus 329 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~ 389 (406)
T 4dyl_A 329 QEMVTQLQQELRNEEENTHPRERVQLLG-KRQVLQEALQGLQVALCSQAKLQAQQELLQTKL 389 (406)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCGGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCcchHHHHHh-HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456666777777777766665 55 335788889999999999999998877666544
No 113
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=32.65 E-value=88 Score=34.07 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccCCccccCcchhhhccc
Q 004449 702 VQLLQELDQAKALQEQLEEMSNETALISDPWRYDYNACWFQQSA 745 (753)
Q Consensus 702 ~~l~qel~qak~~q~q~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (753)
..+.+|+..++...+++|..+.--.|-+|| ||.+.|+++=.|
T Consensus 90 ~~a~~e~~~l~~~l~~le~~l~~lLlp~~~--~D~~naileI~a 131 (371)
T 1zbt_A 90 EMAKEELKNSKVAKEEYEEKLRFLLLPKDP--NDDKNIILEIRG 131 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSCCCT--TTTSCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CcccceEEEEEc
Confidence 456677777777888888777765556898 888888876443
No 114
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=31.91 E-value=4.4e+02 Score=27.07 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=8.2
Q ss_pred HHhHHHHHhHHHHHHH
Q 004449 674 KKTQMKFQSWEKQKAL 689 (753)
Q Consensus 674 kk~lkk~qsWEkQK~l 689 (753)
...+..+|.+|.+++.
T Consensus 234 ~~~~~~~Q~lee~Rl~ 249 (350)
T 3aco_A 234 EQVFEQCQQFEEKRLR 249 (350)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444556666655533
No 115
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=31.89 E-value=2.4e+02 Score=30.70 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=25.7
Q ss_pred HHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHH
Q 004449 552 KLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKT 591 (753)
Q Consensus 552 kLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELks 591 (753)
.+..|+.||+.+|.+=.=|.+++- +++|+++.++|+.
T Consensus 29 ~~~~r~~el~~~~~~p~~w~d~~~---~~~~~ke~~~l~~ 65 (365)
T 1gqe_A 29 AKKERLEEVNAELEQPDVWNEPER---AQALGKERSSLEA 65 (365)
T ss_dssp HHHHHHHHHHHHHHSGGGGGSHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccccCHHH---HHHHHHHHHHHHH
Confidence 457899999999998888888653 3455555554443
No 116
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=31.54 E-value=66 Score=28.10 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=30.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (753)
Q Consensus 679 k~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak 712 (753)
..-+.||+-.-|.++|..+|.|...++++|.|+=
T Consensus 38 ~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL 71 (77)
T 3mtu_E 38 NYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTL 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999998764
No 117
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=31.27 E-value=5.4e+02 Score=27.95 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHhhhhhHhhhh
Q 004449 614 MKKLSEMENALCKASGQVERANS 636 (753)
Q Consensus 614 ~KrLsEmEnAL~kasgQlerAns 636 (753)
.|.+.-++..+.++..+++.|+.
T Consensus 184 ~k~~eK~~~k~~k~~~~~~~a~~ 206 (486)
T 3haj_A 184 PEQLKKLQDKIEKCKQDVLKTKE 206 (486)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555543
No 118
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=30.55 E-value=2e+02 Score=25.05 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=42.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 639 RRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQE 707 (753)
Q Consensus 639 rrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qe 707 (753)
|||--++....+||++-+.--.| +.+=..|--.-+.-.+.+++.|+..|...|.|..+|.+.
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~E-------L~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEED-------LKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH-------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888888776644332 222233333446678889999999999999998887654
No 119
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=30.32 E-value=1.4e+02 Score=32.38 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=26.7
Q ss_pred HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHH
Q 004449 550 ILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTL 592 (753)
Q Consensus 550 ilkLv~rv~eLq~qlqewtdWAnqKvMQAarRL~kdk~ELksL 592 (753)
+-.|..|..+|+.+|.+=.=|.+++- +++|+++..+|+.+
T Consensus 5 l~~~~~r~~el~~~~~~p~~~~d~~~---~~~~~ke~~~l~~~ 44 (354)
T 3d5a_X 5 LDRLEEEYRELEALLSDPEVLKDKGR---YQSLSRRYAEMGEV 44 (354)
T ss_dssp HHHHTHHHHHHHHHTTSTTTTSCHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchhhCHHH---HHHHHHHHHHHHHH
Confidence 34678899999999998777887543 33445555444443
No 120
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=30.13 E-value=2.9e+02 Score=24.45 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=33.4
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHH
Q 004449 601 RLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (753)
Q Consensus 601 rlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAa 655 (753)
.|++.+..|| .+|.|||.-+. .|++..+..+..||.+.+.+|.+|+.-
T Consensus 16 ~Lq~~~~~LE----~~l~e~E~~~~---~e~~~~q~~i~~lE~eL~~~r~e~~~q 63 (95)
T 3mov_A 16 QGQKESRACL----ERIQELEDLLA---KEKDNSRRMLTDKEREMAEIRDQMQQQ 63 (95)
T ss_dssp --CCCCHHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 35677777443 477888889999999999999999764
No 121
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=29.37 E-value=4.4e+02 Score=26.32 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004449 622 NALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKV 701 (753)
Q Consensus 622 nAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl 701 (753)
.+...+..++.+....+++|+.++..+. ++...=..+-...|...++||...=.+| |.||
T Consensus 132 ~~~~~~~~~~~~L~~e~~~l~~~~~~l~----------~qlE~~v~~K~~~E~~L~~KF~~lLNeK----------K~KI 191 (213)
T 1ik9_A 132 DTIAENQAKNEHLQKENERLLRDWNDVQ----------GRFEKAVSAKEALETDLYKRFILVLNEK----------KTKI 191 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh----------HHHH
Q ss_pred HHHH-HHHHHHHHHHHHHH
Q 004449 702 VQLL-QELDQAKALQEQLE 719 (753)
Q Consensus 702 ~~l~-qel~qak~~q~q~E 719 (753)
.++| +=|+.|++.+++++
T Consensus 192 R~lq~~Ll~~~~~~~~~~~ 210 (213)
T 1ik9_A 192 RSLHNKLLNAAQEREKDIK 210 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhh
No 122
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.88 E-value=3.7e+02 Score=25.21 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 686 QKALFQEELVTEKRKVVQLLQELDQAKALQEQLEE 720 (753)
Q Consensus 686 QK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~ 720 (753)
+-+.+|+++..-+.++.+|++++........+.|+
T Consensus 97 el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 97 ELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444333333333333
No 123
>1m5i_A APC protein; coiled-coil, antitumor protein; 2.00A {Homo sapiens} SCOP: h.4.13.1
Probab=28.64 E-value=2.5e+02 Score=26.37 Aligned_cols=81 Identities=17% Similarity=0.282 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhh-cHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhh
Q 004449 556 RVRELHNQLHEWTEWANQKVMQAARRLSK-DKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERA 634 (753)
Q Consensus 556 rv~eLq~qlqewtdWAnqKvMQAarRL~k-dk~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerA 634 (753)
-++|++++=++ ++|-+..+.--+.|+.. =.+|=.++-+.. + .|-||=....=-+.||.-+.-..+-+.||
T Consensus 19 Ll~EieKEeke-k~wyysqlq~l~kRi~~lP~~e~fs~Q~D~--i------RqQLefEa~~irs~mEEr~Gt~deM~qRa 89 (125)
T 1m5i_A 19 LLADLDKEEKE-KDWYYAQLQNLTKRIDSLPLTENFSLQTDM--T------RRQLEYEARQIRVAMEEQLGTCQDMEKRA 89 (125)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHTTCC-----CHHHHH--H------HHHHHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHhhhHHHhhhccccccchhhhHH--H------HHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 35788888888 88888777655555542 112212222111 1 33445555566677777777777777777
Q ss_pred hhHHHHHHHhh
Q 004449 635 NSAVRRLEVEN 645 (753)
Q Consensus 635 ns~vrrLE~En 645 (753)
...|-+++.=+
T Consensus 90 QiRv~r~qqIe 100 (125)
T 1m5i_A 90 QRRIARIQQIE 100 (125)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhHH
Confidence 77777776433
No 124
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=28.57 E-value=1.9e+02 Score=26.62 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=0.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q 004449 607 QILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQ 686 (753)
Q Consensus 607 q~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQ 686 (753)
|-++--||--|.|+|.+|..-.+||.-|. ++|+..+..-..-=+--..++.+.=++
T Consensus 27 ~~~~~~tM~~ieeLQ~Ei~~~E~QL~iAr---QKLkdAe~~~E~DPDevNK~tl~~R~~--------------------- 82 (107)
T 2k48_A 27 QGIDPFTMSTLQELQENITAHEQQLVTAR---QKLKDAEKAVEVDPDDVNKSTLQNRRA--------------------- 82 (107)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCHHHHHHHHHHHH---------------------
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCcHHHHHHHHHHHH---------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 687 KALFQEELVTEKRKVVQLLQELDQAKALQE 716 (753)
Q Consensus 687 K~lLQEELa~EK~Kl~~l~qel~qak~~q~ 716 (753)
+..+-+.||++|++.|+-+-..++
T Consensus 83 ------~Vsalq~KiaeLKrqLAd~va~gk 106 (107)
T 2k48_A 83 ------AVSTLETKLGELKRQLADLVAAQK 106 (107)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhcc
No 125
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.70 E-value=3e+02 Score=24.29 Aligned_cols=51 Identities=16% Similarity=0.316 Sum_probs=38.5
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 667 QEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEE 720 (753)
Q Consensus 667 ~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~ 720 (753)
.+++.+-++.|.... .+..+|+++|..-+..|+.+.+++...+++..+++-
T Consensus 31 k~lAE~RR~AL~eaL---~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q~ 81 (83)
T 1uii_A 31 KEVAEKRRKALYEAL---KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQY 81 (83)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666554 466678888888888888888888888888777654
No 126
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=27.64 E-value=1.6e+02 Score=26.07 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=34.6
Q ss_pred HHHhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004449 679 KFQSWEKQKALFQEELV-------------TEKRKVVQLLQELDQAKALQEQLEEMSNET 725 (753)
Q Consensus 679 k~qsWEkQK~lLQEELa-------------~EK~Kl~~l~qel~qak~~q~q~E~~~~~~ 725 (753)
-|.+.|.|-..|+.+|. .-|..|.++++.|++|.++.+|+|--.+..
T Consensus 16 lFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 16 HFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 36666666666666662 235678889999999999999988776653
No 127
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.61 E-value=2.8e+02 Score=31.05 Aligned_cols=30 Identities=7% Similarity=-0.038 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 004449 698 KRKVVQLLQELDQAKALQEQLEEMSNETAL 727 (753)
Q Consensus 698 K~Kl~~l~qel~qak~~q~q~E~~~~~~~~ 727 (753)
+.++.+|.+++..+++...++|..+++.++
T Consensus 77 ~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 77 IAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555556666655443
No 128
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=27.49 E-value=53 Score=31.10 Aligned_cols=17 Identities=41% Similarity=0.413 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004449 695 VTEKRKVVQLLQELDQA 711 (753)
Q Consensus 695 a~EK~Kl~~l~qel~qa 711 (753)
.+||+|+++||---.+.
T Consensus 79 ~eEKrkLAqLQ~AY~~L 95 (130)
T 3cl3_D 79 SEEKRKLAQLQVAYHQL 95 (130)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45777777777555443
No 129
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.46 E-value=1.1e+02 Score=29.01 Aligned_cols=26 Identities=8% Similarity=0.165 Sum_probs=15.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 680 FQSWEKQKALFQEELVTEKRKVVQLL 705 (753)
Q Consensus 680 ~qsWEkQK~lLQEELa~EK~Kl~~l~ 705 (753)
+..|+.+...|+++|..|+.+-....
T Consensus 41 l~~~~~e~~~L~~~l~eE~~~R~~aE 66 (135)
T 2e7s_A 41 LSDRDDEVKRLREDIAKENELRTKAE 66 (135)
T ss_dssp TTTHHHHHHTHHHHHHHTTSHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666667776666655444333
No 130
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=27.41 E-value=4.6e+02 Score=25.85 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=35.5
Q ss_pred HHhhHHHHHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHH
Q 004449 565 HEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEK 606 (753)
Q Consensus 565 qewtdWAnqKvMQAarRL~kdk~ELksLR~EkEE~erlkKeK 606 (753)
+.+.|=|-+=|-+.-+-|-+++.+|..+--|++.+.+-++.|
T Consensus 15 ~~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~~h~~~k 56 (169)
T 3k29_A 15 KDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQK 56 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888889999999999999999988777765
No 131
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=26.96 E-value=53 Score=29.08 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004449 688 ALFQEELVTEKRKVVQLLQELDQAKALQEQLEEMS 722 (753)
Q Consensus 688 ~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~~ 722 (753)
+.|||||.+-..-|-.|.+||++|.+.-+..|..-
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~ 59 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAIDEANPAEIAN 59 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHh
Confidence 46888888888888888888888877655444433
No 132
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=26.85 E-value=2.6e+02 Score=30.77 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=13.6
Q ss_pred hhhhhhhHHHHHHHHHHhhh
Q 004449 610 EENTMKKLSEMENALCKASG 629 (753)
Q Consensus 610 Ee~T~KrLsEmEnAL~kasg 629 (753)
|-+..+.|.|||+.|...+.
T Consensus 33 e~~V~~~l~~L~~~l~~isn 52 (411)
T 3ghg_C 33 QTKVDKDLQSLEDILHQVEN 52 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHh
Confidence 45566778888887765544
No 133
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=26.84 E-value=1.2e+02 Score=26.39 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=13.8
Q ss_pred hhHhhhhHHHHHHHhhHHHHHHHHHHH
Q 004449 630 QVERANSAVRRLEVENTALRQEMEAAK 656 (753)
Q Consensus 630 QlerAns~vrrLE~EnA~lR~EmEAaK 656 (753)
|.+.+-..++.+|.+|+.|+......+
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le 33 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAME 33 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344555556666666666665555444
No 134
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=26.21 E-value=2.8e+02 Score=24.54 Aligned_cols=52 Identities=17% Similarity=0.321 Sum_probs=38.4
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004449 667 QEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEEM 721 (753)
Q Consensus 667 ~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E~~ 721 (753)
.+++.+-++.|.... .+..+|+++|..-+..|+.|.++..+.+.+..+++-+
T Consensus 23 k~lAE~Rr~AL~eaL---~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~l 74 (83)
T 1wlq_A 23 KEVAEQRRKALYEAL---KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYM 74 (83)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777766654 3555688888888888888888888888887776543
No 135
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=25.90 E-value=3.3e+02 Score=23.72 Aligned_cols=24 Identities=50% Similarity=0.697 Sum_probs=16.6
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 004449 585 DKAELKTLRQEKEEVERLKKEKQILEE 611 (753)
Q Consensus 585 dk~ELksLR~EkEE~erlkKeKq~lEe 611 (753)
-.+||.+||+=.+| |+++++-|++
T Consensus 23 ~qaEl~sLrrT~~E---L~~G~~KL~~ 46 (78)
T 3iv1_A 23 AQAELNALKRTEED---LKKGHQKLEE 46 (78)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH---HHhhhHHHHH
Confidence 35889999887665 4666666654
No 136
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=25.69 E-value=6.6e+02 Score=28.15 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=11.4
Q ss_pred hhhhhhhHHHHHHHHHHhh
Q 004449 610 EENTMKKLSEMENALCKAS 628 (753)
Q Consensus 610 Ee~T~KrLsEmEnAL~kas 628 (753)
|-+..+-|.|||+-|...+
T Consensus 90 e~~V~~dl~~Le~~l~~is 108 (461)
T 3ghg_B 90 ERPIRNSVDELNNNVEAVS 108 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHH
Confidence 4445566777777765443
No 137
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=25.66 E-value=1.7e+02 Score=25.01 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHH-------HHHHhhHHHHH
Q 004449 592 LRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVR-------RLEVENTALRQ 650 (753)
Q Consensus 592 LR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vr-------rLE~EnA~lR~ 650 (753)
|+.|++..+.. |+++|.+|..+...+++-...-+ +||.|+|.-|+
T Consensus 3 l~~e~~~~~~~--------------i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRk 54 (74)
T 2xv5_A 3 SARERDTSRRL--------------LAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 138
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=25.44 E-value=1.9e+02 Score=25.37 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=34.7
Q ss_pred HHhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004449 680 FQSWEKQKALFQEELV------------TEKRKVVQLLQELDQAKALQEQLEEMSNET 725 (753)
Q Consensus 680 ~qsWEkQK~lLQEELa------------~EK~Kl~~l~qel~qak~~q~q~E~~~~~~ 725 (753)
|.+.|.|-..+.++|. .-|..|.++++.|+.|.++..|||--.+..
T Consensus 3 F~~YE~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 3 LISYESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556666666666654 345678999999999999999999887764
No 139
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.30 E-value=94 Score=25.67 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=28.6
Q ss_pred HHhHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhh
Q 004449 211 LAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACA 246 (753)
Q Consensus 211 L~GLVafLrs~fP~LS~~DAmwyLLlADaDLl~A~a 246 (753)
+..||--+++.||+++....+|=|.... ++.+-+.
T Consensus 13 ~~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~Tie 47 (58)
T 2ejs_A 13 LNAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTD 47 (58)
T ss_dssp HHHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHH
Confidence 5667888999999999999999998876 6655543
No 140
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.21 E-value=1.5e+02 Score=33.15 Aligned_cols=27 Identities=7% Similarity=-0.023 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 689 LFQEELVTEKRKVVQLLQELDQAKALQ 715 (753)
Q Consensus 689 lLQEELa~EK~Kl~~l~qel~qak~~q 715 (753)
.|.+|...-+.+|.+|.+++.++++..
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666766666665554443
No 141
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=25.13 E-value=2.5e+02 Score=25.11 Aligned_cols=69 Identities=12% Similarity=0.164 Sum_probs=45.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 004449 638 VRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKA------LFQEELVTEKRKVVQLLQELDQA 711 (753)
Q Consensus 638 vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~Ev~krekk~lkk~qsWEkQK~------lLQEELa~EK~Kl~~l~qel~qa 711 (753)
.++|..++.+|.+|++-+.- .+..|+|++.-=.+.- -++.+|..-..||..|+.++.+.
T Consensus 17 kkkL~~Ki~el~~ei~ke~~---------------~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~ 81 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQKEVD---------------QREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKY 81 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------HHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666554321 2444445444322221 13888999999999999999999
Q ss_pred HHHHHHHHHh
Q 004449 712 KALQEQLEEM 721 (753)
Q Consensus 712 k~~q~q~E~~ 721 (753)
...-.++|.+
T Consensus 82 q~~L~e~e~~ 91 (98)
T 2ke4_A 82 EAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 9998888866
No 142
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=24.49 E-value=1.3e+02 Score=31.99 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=23.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (753)
Q Consensus 679 k~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak 712 (753)
.+..=+.+...||+.|...+.||.+|++.+.+.+
T Consensus 20 ~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 20 IGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567777778888777777777777665544
No 143
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=24.49 E-value=1e+02 Score=25.60 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=30.0
Q ss_pred HHHhHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhh
Q 004449 210 ILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACA 246 (753)
Q Consensus 210 SL~GLVafLrs~fP~LS~~DAmwyLLlADaDLl~A~a 246 (753)
-|..||--+++.||.++....+|=|... .++.+.++
T Consensus 16 ql~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~Tie 51 (58)
T 4g3o_A 16 QLNAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTD 51 (58)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHH
Confidence 5788999999999999999999999876 56655443
No 144
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=24.45 E-value=5.2e+02 Score=25.45 Aligned_cols=38 Identities=18% Similarity=0.113 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhhhh---hhhhHHHHHHHHHHhhhhhHhh
Q 004449 597 EEVERLKKEKQILEEN---TMKKLSEMENALCKASGQVERA 634 (753)
Q Consensus 597 EE~erlkKeKq~lEe~---T~KrLsEmEnAL~kasgQlerA 634 (753)
++.+++.++++..... ++|++......+.+|..+.++|
T Consensus 116 ~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a 156 (301)
T 2efk_A 116 QEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERL 156 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555554433 3344444444444444444444
No 145
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=24.20 E-value=4.3e+02 Score=24.40 Aligned_cols=62 Identities=26% Similarity=0.286 Sum_probs=27.2
Q ss_pred HHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004449 593 RQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAE 661 (753)
Q Consensus 593 R~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~E 661 (753)
|+=+++.+++.+++.-||+. +.-.-.....||..-...++.=|.....|++--..+|-.+.+
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~-------w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~ 77 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDF-------IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQE 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555 222222233344444444444444444555544444444433
No 146
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.15 E-value=1.4e+02 Score=32.24 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHH
Q 004449 617 LSEMENALCKASGQVERANSAVRRLEVENTAL 648 (753)
Q Consensus 617 LsEmEnAL~kasgQlerAns~vrrLE~EnA~l 648 (753)
+.+++..+.....++...+..-|+|-.+..+|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 26 IKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444444444555555555555554444
No 147
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.97 E-value=2.9e+02 Score=28.01 Aligned_cols=50 Identities=16% Similarity=0.340 Sum_probs=24.4
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 667 QEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (753)
Q Consensus 667 ~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~~q~q~E 719 (753)
.+++.+-+++|.... .+..+|+++|..-+..|+.|.+++...+++.++++
T Consensus 100 k~lAE~RR~AL~eaL---eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 100 KEVAEKRRKALYEAL---KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333 23444555555555555555555555555544443
No 148
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.94 E-value=2.2e+02 Score=27.82 Aligned_cols=63 Identities=8% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 004449 586 KAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR 658 (753)
Q Consensus 586 k~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~ 658 (753)
+++++.||++-... -...+..|-....+|...-..=.-=.+.|+.|..|+++||.+|+...+.
T Consensus 73 q~ql~~I~~e~r~~----------~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 73 QATAQKIYDDYYTQ----------TSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
No 149
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.78 E-value=2.1e+02 Score=30.43 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=13.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 680 FQSWEKQKALFQEELVTEKRKVVQLLQELDQ 710 (753)
Q Consensus 680 ~qsWEkQK~lLQEELa~EK~Kl~~l~qel~q 710 (753)
.+++..++.+|+.-|......|..|+..|++
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~ 37 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWRV 37 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 150
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=22.53 E-value=4.7e+02 Score=24.27 Aligned_cols=45 Identities=13% Similarity=0.293 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH-HhhhcHHHHHHHHHhHHHH
Q 004449 555 PRVRELHNQLHEWTEWANQKVMQAAR-RLSKDKAELKTLRQEKEEV 599 (753)
Q Consensus 555 ~rv~eLq~qlqewtdWAnqKvMQAar-RL~kdk~ELksLR~EkEE~ 599 (753)
.|.+..+..+.+-.+|-.++--+.+. -+++|++..+.|-++++..
T Consensus 3 ~~~~~F~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~~l 48 (216)
T 1u5p_A 3 NKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLL 48 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHH
Confidence 35677788888888888877655543 3678888888887776643
No 151
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=22.19 E-value=1.4e+02 Score=21.43 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=26.8
Q ss_pred hHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhhc
Q 004449 213 ELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAM 247 (753)
Q Consensus 213 GLVafLrs~fP~LS~~DAmwyLLlADaDLl~A~am 247 (753)
..|.-|... .++..+|...|..++.|+..|+..
T Consensus 6 ~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~ 38 (40)
T 1z96_A 6 SKIAQLVSM--GFDPLEAAQALDAANGDLDVAASF 38 (40)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 345666665 789999999999999999999763
No 152
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=22.08 E-value=6e+02 Score=25.39 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=7.0
Q ss_pred HhHHHHHhHHHHHH
Q 004449 675 KTQMKFQSWEKQKA 688 (753)
Q Consensus 675 k~lkk~qsWEkQK~ 688 (753)
..+..+|..|.+++
T Consensus 235 ~~~~~~Q~lee~Rl 248 (312)
T 3abh_A 235 QVFEQCQQFEEKRL 248 (312)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555555554
No 153
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.80 E-value=1.1e+02 Score=23.81 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=22.6
Q ss_pred HHHHHHHhhhhcCCchHHHHHHHhhcc
Q 004449 140 IFKSAIKKIVACGYMEEVATKAVLRSG 166 (753)
Q Consensus 140 fYl~ALarLP~~g~~e~~~~rALL~AG 166 (753)
.|.+.|.+|..+||++..+.+||..++
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~ 33 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASY 33 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 477889999999999998888887644
No 154
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.79 E-value=7.3e+02 Score=26.25 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHhhhhhHhhhhHHHHH
Q 004449 615 KKLSEMENALCKASGQVERANSAVRRL 641 (753)
Q Consensus 615 KrLsEmEnAL~kasgQlerAns~vrrL 641 (753)
++|+|.+.-+-++..|---+|-+|--|
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (471)
T 3mq9_A 404 QELTEAQKGFQDVEAQAATANHTVMAL 430 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcchhHHHH
Confidence 555555555555555555555555443
No 155
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=21.75 E-value=4.5e+02 Score=29.40 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 004449 693 ELVTEKRKVVQLLQELDQAKALQEQLEEMSNETA 726 (753)
Q Consensus 693 ELa~EK~Kl~~l~qel~qak~~q~q~E~~~~~~~ 726 (753)
|....+.++.+|.+++..+++...++|+++.+.+
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555566666666666666665544
No 156
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.44 E-value=1.1e+02 Score=25.58 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=27.9
Q ss_pred HHhHHHHHHhhCCCCChHHHHHHHHHhCCcHHHHhh
Q 004449 211 LAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACA 246 (753)
Q Consensus 211 L~GLVafLrs~fP~LS~~DAmwyLLlADaDLl~A~a 246 (753)
|..||--+++.||+++....+|=|.... ++.+.+.
T Consensus 13 l~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~Tie 47 (61)
T 2ekf_A 13 LATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTIT 47 (61)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHH
Confidence 3456777999999999999999998875 6666554
No 157
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.21 E-value=3.4e+02 Score=29.41 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 589 LKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQE 668 (753)
Q Consensus 589 LksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ES~~sc~E 668 (753)
++-+|...|.+.+--+-+..=.+ ..++.++....+++..++|..++.--.+..++.. +..-++..|
T Consensus 4 ~~~~r~~~~~~~~~~~~r~~~~~--~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~-~~~~~~~~l----------- 69 (421)
T 1ses_A 4 LKRLRQEPEVFHRAIREKGVALD--LEALLALDREVQELKKRLQEVQTERNQVAKRVPK-APPEEKEAL----------- 69 (421)
T ss_dssp HHHHHHCHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-SCHHHHHHH-----------
T ss_pred HHHHHhCHHHHHHHHHHhCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccccHHHH-----------
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 669 VSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (753)
Q Consensus 669 v~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qa 711 (753)
-.+-..|.++|++-+.++.++++++...
T Consensus 70 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 70 ---------------IARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 158
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=21.14 E-value=5.8e+02 Score=24.79 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHhHHHH----HHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHhhhhHHHHHHHhhHH
Q 004449 572 NQKVMQAARRLSKDKAELKTLRQEKEEV----ERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTA 647 (753)
Q Consensus 572 nqKvMQAarRL~kdk~ELksLR~EkEE~----erlkKeKq~lEe~T~KrLsEmEnAL~kasgQlerAns~vrrLE~EnA~ 647 (753)
.+.|+.-..++.++..+.+.+++.|+.. ++.+..-..+.+...| -+..|.+|..+++.|.. .+|.-|..
T Consensus 129 ~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k----d~~kl~kae~el~~ak~---~ye~ln~~ 201 (251)
T 2fic_A 129 VDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKK----DEAKIAKAEEELIKAQK---VFEEMNVD 201 (251)
T ss_dssp HHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcC----cHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3679999999999999998888887743 1111111111111000 12233344444444433 44555788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004449 648 LRQEMEAAKLRAAESAASCQEV 669 (753)
Q Consensus 648 lR~EmEAaKL~A~ES~~sc~Ev 669 (753)
|+.||..---...+-...|...
T Consensus 202 L~~eLp~l~~~~~~~~~~~l~~ 223 (251)
T 2fic_A 202 LQEELPSLWNSRVGFYVNTFQS 223 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877655555555555443
No 159
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.07 E-value=7.5e+02 Score=26.14 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=9.5
Q ss_pred HHHHHHHhhHHHHHHHH
Q 004449 637 AVRRLEVENTALRQEME 653 (753)
Q Consensus 637 ~vrrLE~EnA~lR~EmE 653 (753)
.|++||+|+..+.++++
T Consensus 444 ~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55556655555555544
No 160
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=20.90 E-value=3.3e+02 Score=23.99 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=27.3
Q ss_pred HHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 668 EVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQE 707 (753)
Q Consensus 668 Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qe 707 (753)
.+..-|...+..|..-|++++.|-.||.+.+....+|.++
T Consensus 15 ~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 15 ELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 3444455556667778888888888887777777766543
No 161
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=20.78 E-value=1.7e+02 Score=21.36 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 688 ALFQEELVTEKRKVVQLLQELDQAK 712 (753)
Q Consensus 688 ~lLQEELa~EK~Kl~~l~qel~qak 712 (753)
+-|..||++-|..|+.|.=|++..|
T Consensus 5 aalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666655555444
No 162
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.74 E-value=4.7e+02 Score=23.65 Aligned_cols=35 Identities=31% Similarity=0.329 Sum_probs=16.6
Q ss_pred HHHHHHHHhhhhhHhhhhHHHHHHHhhHHHHHHHH
Q 004449 619 EMENALCKASGQVERANSAVRRLEVENTALRQEME 653 (753)
Q Consensus 619 EmEnAL~kasgQlerAns~vrrLE~EnA~lR~EmE 653 (753)
.+|+.|......||.+.-+--.||.+...|+.|+.
T Consensus 66 ~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 66 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544444444444444444443
No 163
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=20.50 E-value=3.7e+02 Score=23.70 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=40.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhh-HhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 004449 586 KAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQV-ERANSAVRRLEVENTALRQEMEAAKLR 658 (753)
Q Consensus 586 k~ELksLR~EkEE~erlkKeKq~lEe~T~KrLsEmEnAL~kasgQl-erAns~vrrLE~EnA~lR~EmEAaKL~ 658 (753)
+..+...-...+|++.| |..||-.++..-.+. -.-++.||....+...|++|+.-+++.
T Consensus 37 k~~i~~ie~~l~EA~el--------------l~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~~ 96 (102)
T 1vcs_A 37 KQMVANVEKQLEEAREL--------------LEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIA 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHH--------------HHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHTC
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566666677777766 888888888875443 234667777777777777777665543
No 164
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=20.47 E-value=3.3e+02 Score=24.21 Aligned_cols=47 Identities=26% Similarity=0.292 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004449 661 ESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (753)
Q Consensus 661 ES~~sc~Ev~krekk~lkk~qsWEkQK~lLQEELa~EK~Kl~~l~qel~qak~ 713 (753)
-.|.+|.. |-+......|.++..|+-|+..-+..+.++.+|+...++
T Consensus 37 gyAq~CR~------Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 37 GYAQSCRY------KRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778852 222333555666666666666666666666666655543
No 165
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=20.33 E-value=7.1e+02 Score=25.55 Aligned_cols=45 Identities=27% Similarity=0.183 Sum_probs=29.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhh
Q 004449 678 MKFQSWEKQKALFQEELVTEK------RKVVQLLQELDQAKALQEQLEEMS 722 (753)
Q Consensus 678 kk~qsWEkQK~lLQEELa~EK------~Kl~~l~qel~qak~~q~q~E~~~ 722 (753)
+.+|--..-|.+|+.+|+.-| .||..|+|||..++....-.|+.+
T Consensus 104 ~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL 154 (234)
T 3plt_A 104 ASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQL 154 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHH
Confidence 344555555666666666555 688899999987776655555443
No 166
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.30 E-value=2.2e+02 Score=24.44 Aligned_cols=55 Identities=18% Similarity=0.368 Sum_probs=34.4
Q ss_pred hhHhhhhHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHhHH
Q 004449 630 QVERANSAVRRLEVENTALRQEMEAAKLR---AAESAASCQEVSKREKKTQMKFQSWE 684 (753)
Q Consensus 630 QlerAns~vrrLE~EnA~lR~EmEAaKL~---A~ES~~sc~Ev~krekk~lkk~qsWE 684 (753)
+|+.-...+-+||.+++.|..+|-..-+- ..+...-..++...+...-..+..|+
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667778888888888888655442 23344444555555555566666775
No 167
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=20.06 E-value=1.9e+02 Score=23.42 Aligned_cols=37 Identities=30% Similarity=0.279 Sum_probs=25.8
Q ss_pred HHHhhhhhHhhhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 004449 624 LCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAA 660 (753)
Q Consensus 624 L~kasgQlerAns~vrrLE~EnA~lR~EmEAaKL~A~ 660 (753)
+...+.||+.-+.-|-.|..+...+|-+..+||=.|.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~ 42 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAA 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777788877777775554
Done!