BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004450
         (753 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OMB|A Chain A, Crystal Structure Of Extracellular Solute-Binding Protein
           From Bifidobacterium Longum Subsp. Infantis
          Length = 535

 Score = 29.6 bits (65), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 16/93 (17%)

Query: 468 NIQALIKQYEKAIASRHEKEVKADYDTVNTEPVLKTPSPMEKQVANLYTRKIFMKFQEEL 527
           ++Q  +  + KAI    E E   D D                +++ L     +    E L
Sbjct: 379 SVQQFLGSFGKAITKTGEHEYTVDND----------------KLSQLTGDNQYPGLSELL 422

Query: 528 VETLAYPATIVNDTGSEIIYRVAKFGEEQKAHF 560
           V  +   ATI  DT ++ +  V K  EEQ++HF
Sbjct: 423 VGWIPDEATIKGDTHADELIEVNKVYEEQRSHF 455


>pdb|2SPC|A Chain A, Crystal Structure Of The Repetitive Segments Of Spectrin
 pdb|2SPC|B Chain B, Crystal Structure Of The Repetitive Segments Of Spectrin
          Length = 107

 Score = 29.3 bits (64), Expect = 8.9,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 6/58 (10%)

Query: 436 VYLRDTFFGEMSMTQASDNINSYFDGYINASTNIQALIKQYE---KAIASRHEKEVKA 490
           +Y+RD    E  M+     +N+  D   NA  N++ALIK++E   KAI + HE+++ A
Sbjct: 7   LYMRDCELAESWMSAREAFLNA--DDDANAGGNVEALIKKHEDFDKAI-NGHEQKIAA 61


>pdb|2H3X|C Chain C, Crystal Structure Of An Electron Transfer Complex Between
           Aromatic Amine Dehydrogenase And Azurin From Alcaligenes
           Faecalis (Form 3)
 pdb|2H3X|F Chain F, Crystal Structure Of An Electron Transfer Complex Between
           Aromatic Amine Dehydrogenase And Azurin From Alcaligenes
           Faecalis (Form 3)
 pdb|2H47|C Chain C, Crystal Structure Of An Electron Transfer Complex Between
           Aromatic Amine Dephydrogenase And Azurin From
           Alcaligenes Faecalis (Form 1)
 pdb|2IAA|C Chain C, Crystal Structure Of An Electron Transfer Complex Between
           Aromatic Amine Dephydrogenase And Azurin From
           Alcaligenes Faecalis (form 2)
          Length = 128

 Score = 29.3 bits (64), Expect = 9.0,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 9/88 (10%)

Query: 182 LQAAGMGPSGVMSVLIKESGGVNNVGFTKVDCQNYMSSSRQRTLG-----SGGQ---VVI 233
           L  A MG + V+S    ES  V   G       +Y+ +  +R +       GG+   V  
Sbjct: 38  LPKAAMGHNVVVSKKSDESA-VATDGMKAGLNNDYVKAGDERVIAHTSVIGGGETDSVTF 96

Query: 234 DNLKQMQAEDPSFFCAFQGDFENTTGNI 261
           D  K  + ED +FFC+F G +    G I
Sbjct: 97  DVSKLKEGEDYAFFCSFPGHWSIMKGTI 124


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,268,720
Number of Sequences: 62578
Number of extensions: 915001
Number of successful extensions: 1886
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1886
Number of HSP's gapped (non-prelim): 5
length of query: 753
length of database: 14,973,337
effective HSP length: 106
effective length of query: 647
effective length of database: 8,340,069
effective search space: 5396024643
effective search space used: 5396024643
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)