BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004451
(753 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L831|NUDT3_ARATH Nudix hydrolase 3 OS=Arabidopsis thaliana GN=NUDT3 PE=1 SV=1
Length = 772
Score = 1174 bits (3038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/751 (73%), Positives = 648/751 (86%), Gaps = 2/751 (0%)
Query: 2 SEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQ 61
EVHR GDYHR V+ WIF E+TQ+LLLQ R+D KDSWPG WDISSAGHISAGD+SL+SAQ
Sbjct: 23 GEVHRDGDYHRAVHVWIFVETTQQLLLQLRSDDKDSWPGQWDISSAGHISAGDTSLLSAQ 82
Query: 62 RELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQT 121
REL+EELG+ LPKDAFE +F FLQ+ V NDGKFINNEF DVYLVT L+PIPLEAFTLQ+
Sbjct: 83 RELEEELGVKLPKDAFEKIFVFLQECVTNDGKFINNEFNDVYLVTILHPIPLEAFTLQKE 142
Query: 122 EVSAVKYIAYEEYKNLLAKDDPSFVPYDVNGGYGQLFNIISQRYKENTMERSLTLQKQLR 181
EVSAVKY+ YEEY+N L+K+DP++VPYDVNG YG+LF+II QR + NT RSL+LQKQL+
Sbjct: 143 EVSAVKYVPYEEYRNFLSKEDPAYVPYDVNGEYGKLFDIIRQRCQVNTEARSLSLQKQLQ 202
Query: 182 RYAHVSLNAELAGLSDADKEALVLVIKAATVMDEIFYLQVWYSNPVLRDWLKEHADASEL 241
RY+ V+L A+L LS+AD++AL L++KAA +MD+IFY QVW SNP LRDWLK+HA+AS+L
Sbjct: 203 RYSPVTLEAKLTELSEADQKALGLIVKAAKIMDDIFYEQVWNSNPALRDWLKDHANASKL 262
Query: 242 DKLKWMYYLINKSPWSSLDENEAFLTTADSAVKLLPDATKPVNGWKGLEYKASFPLPKPP 301
DKLKW Y+ INKSPWSSLDENEAFL+TADSAVKLLP ATK + GWKGLEY+A+FP+ KPP
Sbjct: 263 DKLKWDYFTINKSPWSSLDENEAFLSTADSAVKLLPGATKAIAGWKGLEYRAAFPVTKPP 322
Query: 302 GANFYPPDMDKMEFELWKSSLTEKQQEDATSFFTVIKRRSEFNLDSSLSGHIVDATNHSV 361
GANFYPPDMDKMEF LW + LTE+Q+ AT FF+VIKRRSE NLD+S H+ +T
Sbjct: 323 GANFYPPDMDKMEFTLWLNGLTEEQKHAATGFFSVIKRRSEANLDAS--DHLASSTKKLP 380
Query: 362 GSIYDLYSVPYSEEYNSYLTRASELLHKAGDMASSPSLKRLLHSKADAFLSNNYYDSDIA 421
S DLYS+PYSE Y +L +ASE L KAGD+ SSPSLK+LLHSKA+AFLSN YY+SDIA
Sbjct: 381 DSNSDLYSIPYSEIYRPFLKKASEFLQKAGDLVSSPSLKKLLHSKAEAFLSNEYYESDIA 440
Query: 422 WIELDSELDVTIGPYETYEDAIFGYKATFEAFIGIRDDKATAQVKLFGDNLQVLEQNLPM 481
W++LDS+LD+TIGPYETYED IFGYKATFE FIGIRDDKATA +KLFGDNL++LE NLP+
Sbjct: 441 WMDLDSKLDITIGPYETYEDEIFGYKATFETFIGIRDDKATADLKLFGDNLKLLEDNLPL 500
Query: 482 DNAYKSKDVIAAPIRVIQLIYNSGDVKGPQTVAFNLPNDERIVKDRGTSMVMLKNVSEAK 541
++ YKS DV AAPIRVIQLIYNSGDVKGPQTVA+NLPNDE+IVKDRGTSMVMLKNV EAK
Sbjct: 501 ESVYKSTDVSAAPIRVIQLIYNSGDVKGPQTVAYNLPNDEKIVKDRGTSMVMLKNVQEAK 560
Query: 542 FKNILRPIADVCIRKEQQELVDFDSFFTHNICHECCHGIGPHSITLPDGRQSTVRLELQE 601
F++IL+PIA++ I KEQ+ LVDFDSFFTH ICHECCHGIGPH+ITLP G+ STVR ELQE
Sbjct: 561 FEHILKPIAEITISKEQRGLVDFDSFFTHTICHECCHGIGPHTITLPGGQTSTVRKELQE 620
Query: 602 LHSAMEEAKADIVGLWALKFLIGRDLLPKSLVKSMYVSFLAGCFRSVRFGLEESHGKGQA 661
+HSAMEEAKADIVGLWALKFLI + LL KS+V+SMYVSFLAGCFRS+RFGL E+HGKGQA
Sbjct: 621 VHSAMEEAKADIVGLWALKFLITKGLLSKSMVESMYVSFLAGCFRSIRFGLTEAHGKGQA 680
Query: 662 LQFNWLFEKEAFILHSDDTFSVDFDKVEGAVESLSTEILTIQARGDKEAASLLLQKYCTM 721
LQFN+L+EK AF+ H D TFSVDF K+EGAVESLS EILTIQ +GDK AA+LLL KYCT+
Sbjct: 681 LQFNYLYEKGAFVFHEDSTFSVDFAKIEGAVESLSHEILTIQGKGDKNAATLLLNKYCTI 740
Query: 722 TQPLKVALQKLENVQVPVDIAPTFTAVNKLL 752
T PLK AL+ LE V+VPVDI+PTF L+
Sbjct: 741 TGPLKTALENLERVKVPVDISPTFPLAEALM 771
>sp|Q97LV8|Y446_CLOAB Uncharacterized Nudix hydrolase CA_C0446 OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=CA_C0446 PE=3 SV=1
Length = 206
Score = 79.0 bits (193), Expect = 1e-13, Method: Composition-based stats.
Identities = 56/168 (33%), Positives = 93/168 (55%), Gaps = 17/168 (10%)
Query: 3 EVHRVGDYHRTVNAWIFAESTQE--LLLQRRADFKDSWPGMWDISSAGHISAGDSSLISA 60
EVH G +H T + W+ ++ L+ Q+R KD+ P M+D+SSAGHI +G+ S+
Sbjct: 23 EVHEKGYWHSTFHCWVVKREGKKTFLIFQKRHPLKDTAPNMFDVSSAGHIKSGE-SIEDG 81
Query: 61 QRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQ 120
REL+EELGI+ + E + + + + GK I+ EF +Y+ + N +E++TLQ+
Sbjct: 82 VRELKEELGIDAKPN--ELINIGIIKEEFHIGKNIDREFCHIYIYS--NKAEIESYTLQR 137
Query: 121 TEVSAVKYIAYEEYKNLLAKDDPSFVPYDVNGGYGQLF--NIISQRYK 166
EV + I +E LA+ F+ ++G + + F N +RYK
Sbjct: 138 DEVVGLVKIEIDE----LAR----FLDNKIDGVFAEGFIVNQEGRRYK 177
>sp|Q8Y9Z9|Y368_LISMO Uncharacterized Nudix hydrolase lmo0368 OS=Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=lmo0368
PE=3 SV=1
Length = 169
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 18/153 (11%)
Query: 8 GDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEE 67
G+ H ++ IF E Q LL+Q+R K+ WP WD+S+AG G++S +A+RE+QEE
Sbjct: 27 GELHLVIHVCIFNEKGQ-LLIQKRQKDKEGWPNYWDLSAAGSALKGETSQQAAEREVQEE 85
Query: 68 LGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVK 127
LGI + F++ F D + +T + L TLQ+ EV+ +
Sbjct: 86 LGIMIDLSGTRAKFSY----------HFEEGFDDYWFIT--KDVQLSDLTLQKEEVADAR 133
Query: 128 YIAYEEYKNLLAKDDPSFVPYDVNGGYGQLFNI 160
++ EE + L + F+PY QLFN+
Sbjct: 134 FVTKEELEAL--RSSGEFIPYFF---LNQLFNL 161
>sp|Q92ES1|Y387_LISIN Uncharacterized Nudix hydrolase lin0387 OS=Listeria innocua serovar
6a (strain CLIP 11262) GN=lin0387 PE=3 SV=1
Length = 169
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 19/143 (13%)
Query: 8 GDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEE 67
G+ H V+ IF E Q LL+Q+R K+ WP WD+S+AG G++S +A+RE++EE
Sbjct: 27 GELHLVVHVCIFNEKGQ-LLIQKRQKDKEGWPNYWDLSAAGSALKGETSRQAAEREVKEE 85
Query: 68 LG--INLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSA 125
LG I+L +F + F F D + +T + L TLQ EV+
Sbjct: 86 LGMTIDLSNTRAKFSYHF------------EAGFDDYWFIT--KDVELSDLTLQTEEVAD 131
Query: 126 VKYIAYEEYKNLLAKDDPSFVPY 148
V+++ E+ + L + F+PY
Sbjct: 132 VRFVTKEKLEAL--RSSGEFIPY 152
>sp|Q6D3F5|IDI_ERWCT Isopentenyl-diphosphate Delta-isomerase OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=idi PE=3 SV=1
Length = 179
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 10/122 (8%)
Query: 3 EVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQR 62
E H G+ HR + +IF S Q+LLLQ+RA+ K G+W + H + G+ +L +A R
Sbjct: 23 EAHVKGELHRAITVYIF-NSRQQLLLQQRAEEKYHSGGLWSNTCCSHPAPGEETLQAAHR 81
Query: 63 ELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYL-----VTTLNPIPLEAFT 117
L EE+G+ + A +FT + +++G I +E VY V +NP + ++
Sbjct: 82 RLYEEMGL---RCALTPMFTLTYRLQLDNG-LIEHELGHVYFGVTDDVPQINPDEVSSYE 137
Query: 118 LQ 119
Q
Sbjct: 138 YQ 139
>sp|A8GDW2|IDI_SERP5 Isopentenyl-diphosphate Delta-isomerase OS=Serratia proteamaculans
(strain 568) GN=idi PE=3 SV=1
Length = 179
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 2 SEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQ 61
+ VH+ G HR + +IF +S LLLQ+RA K G+W S GH G+S+L +AQ
Sbjct: 21 TRVHQQGLLHRAFSIFIF-DSQGRLLLQQRAFSKYHSAGLWTNSCCGHPRWGESTLAAAQ 79
Query: 62 RELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYL 104
R LQEE+G + + V +F Q + G I +EF +Y+
Sbjct: 80 RRLQEEMGFSAE---LQQVSSFTYQAAV-PGDLIEHEFDHIYV 118
>sp|O42641|IDI1_PHARH Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI
PE=3 SV=1
Length = 251
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 19/161 (11%)
Query: 1 MSEVHRVGDY-HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSL-- 57
MS ++ D HR + ++F S LLLQRRAD K ++PGMW + H + +
Sbjct: 55 MSNINAPKDLLHRAFSVFLFRPSDGALLLQRRADEKITFPGMWTNTCCSHPLSIKGEVKE 114
Query: 58 -------ISAQRELQEELGI---NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTT 107
+A R+L+ ELG+ + P D+F ++ T + +DG + +E + TT
Sbjct: 115 ENQIGVRRAASRKLEHELGVPTSSTPPDSFTYL-TRIHYLAPSDGLWGEHEIDYILFSTT 173
Query: 108 LNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPY 148
P E T EVS +Y+ E + + + SF P+
Sbjct: 174 ----PTE-HTGNPNEVSDTRYVTKPELQAMFEDESNSFTPW 209
>sp|Q9HUW9|Y4841_PSEAE Uncharacterized Nudix hydrolase PA4841 OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=PA4841 PE=3 SV=2
Length = 169
Score = 55.5 bits (132), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 18/127 (14%)
Query: 22 STQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVF 81
S EL +QRR K +PG WD+++ G + AG+ SA REL+EELGI +DA
Sbjct: 47 SAGELCVQRRTLSKAVYPGYWDLAAGGMVQAGEPYADSAARELEEELGI---RDA----- 98
Query: 82 TFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 141
L+++ G+F +E + + + LQ E+S ++I E LA +
Sbjct: 99 -VLREH----GRFFFDEPGNRLWCAVFSAVSDAPLRLQAEEISEARFIRPE-----LALE 148
Query: 142 DPSFVPY 148
+ +PY
Sbjct: 149 EARSLPY 155
>sp|Q7X5H2|IDI_CITFR Isopentenyl-diphosphate Delta-isomerase OS=Citrobacter freundii
GN=idi PE=3 SV=1
Length = 182
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H + WIF E Q LL+ RR+ K +WPG+W S GH G+++ + R ELG
Sbjct: 32 HSAFSCWIFNEQGQ-LLVTRRSLHKKAWPGVWTNSVCGHPQLGETTEAAINRRACFELGA 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVY 103
++ D+ V+T + + + NE VY
Sbjct: 91 DI--DSLSPVYTDFRYCATDPSGIVENEVCPVY 121
>sp|Q42553|IDI2_ARATH Isopentenyl-diphosphate Delta-isomerase II, chloroplastic
OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1
Length = 284
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 19/144 (13%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLI---------SAQ 61
HR + ++F S ELLLQ+R++ K ++P +W + H +S LI +AQ
Sbjct: 104 HRAFSVFLF-NSKYELLLQQRSNTKVTFPLVWTNTCCSHPLYRESELIQDNALGVRNAAQ 162
Query: 62 RELQEELGI---NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTL 118
R+L +ELGI ++P D F + L + +DGK+ +E YL+ + + ++
Sbjct: 163 RKLLDELGIVAEDVPVDEFTPLGRMLYK-APSDGKWGEHELD--YLLFIVRDVKVQP--- 216
Query: 119 QQTEVSAVKYIAYEEYKNLLAKDD 142
EV+ +KY++ EE K L+ K D
Sbjct: 217 NPDEVAEIKYVSREELKELVKKAD 240
>sp|Q38929|IDI1_ARATH Isopentenyl-diphosphate Delta-isomerase I, chloroplastic
OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=3
Length = 291
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 19/144 (13%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLI---------SAQ 61
HR + ++F S ELLLQ+R+ K ++P +W + H +S LI +AQ
Sbjct: 111 HRAFSVFLF-NSKYELLLQQRSKTKVTFPLVWTNTCCSHPLYRESELIEENVLGVRNAAQ 169
Query: 62 RELQEELGI---NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTL 118
R+L +ELGI ++P D F + L + +DGK+ +E YL+ + + L+
Sbjct: 170 RKLFDELGIVAEDVPVDEFTPLGRMLYK-APSDGKWGEHEVD--YLLFIVRDVKLQP--- 223
Query: 119 QQTEVSAVKYIAYEEYKNLLAKDD 142
EV+ +KY++ EE K L+ K D
Sbjct: 224 NPDEVAEIKYVSREELKELVKKAD 247
>sp|Q6A5Z1|IDI_PROAC Isopentenyl-diphosphate Delta-isomerase OS=Propionibacterium acnes
(strain KPA171202 / DSM 16379) GN=idi PE=3 SV=1
Length = 199
Score = 53.9 bits (128), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 26 LLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQ 85
+L+ RRA K +WPG+W + GH G++ + +A R +ELG++L V
Sbjct: 61 VLVTRRALTKVAWPGVWTNTCCGHPRVGETIIDAAVRRTHQELGLDLDPRRMRVVLPDFS 120
Query: 86 QNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSF 145
+ G + +EF V + P L EV V ++ +++ + LA+ P+
Sbjct: 121 YRATDSGGIVEDEFCPVVVARLSLPEELVELNPDPDEVEEVAWVGWQDMYD-LARSMPAL 179
Query: 146 V-PYDV 150
+ P+ V
Sbjct: 180 LSPWAV 185
>sp|Q10132|IDI1_SCHPO Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=idi1 PE=2 SV=2
Length = 229
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 22/156 (14%)
Query: 8 GDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGH------------ISAGDS 55
G HR + +IF E + LLLQ+RA+ K ++P +W + H A +
Sbjct: 51 GLLHRAFSMFIFDEQNR-LLLQQRAEEKITFPSLWTNTCCSHPLDVAGERGNTLPEAVEG 109
Query: 56 SLISAQRELQEELGIN---LPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIP 112
+AQR+L ELGI +PKD F+F+ T + + G + +E Y++ +
Sbjct: 110 VKNAAQRKLFHELGIQAKYIPKDKFQFL-TRIHYLAPSTGAWGEHEID--YILFFKGKVE 166
Query: 113 LEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPY 148
L+ + EV A KY+ EE K + + F P+
Sbjct: 167 LD---INPNEVQAYKYVTMEELKEMFSDPQYGFTPW 199
>sp|A7RZW4|DPP3_NEMVE Dipeptidyl peptidase 3 OS=Nematostella vectensis GN=dpp3 PE=3 SV=1
Length = 729
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 100/411 (24%), Positives = 163/411 (39%), Gaps = 57/411 (13%)
Query: 262 NEAFLTTADSAVKLLPDATKPVNGWKGLEYKASFPLPKPPGANFYPPDMDKMEFELWKSS 321
++A+ T A S V L D + + K + F + + +Y + +K + E +
Sbjct: 137 SQAYATNAKSVVTLWSDCCEAMYSLKPKLRQLGFG--EQGISTYYSSNCNKSDAEFIQGF 194
Query: 322 LTEKQQED-ATSFFTVIKRRSEFNLDSSLSGHIVDATNHSVGSIYDLYSVPYSEEYNSY- 379
L EK E T F I + + L+ + A + S D+ S+ S EY
Sbjct: 195 LKEKNIEGWNTRLFKEINDKGHVTYNLRLASTALSAEDCSAEKKDDVASLVKSYEYQGTT 254
Query: 380 --LTRA--SELLHKAGD-------MASSPSLKRLLHSKADAFLSNN---YYDSDIAWI-E 424
+TR + LL K D AS+ + +L +F + + + D WI +
Sbjct: 255 VKITRGDYAGLLKKVVDNLIMAKGFASNENEVAMLDHYVHSFTTGSVEAHKDGSRHWIRD 314
Query: 425 LDSELDVTIGPYETYEDAIFGYKATFEAFIGIRDDKATAQVKLFGDNLQVLEQNLPMDNA 484
++ IG E+Y D FG +A +E F+ I + +A+ + + L LP ++
Sbjct: 315 KGPVVETYIGFIESYRDP-FGVRAEYEGFVSIVNKSMSAKFADLVSSAETLLPQLPWPSS 373
Query: 485 YKSKDVIAAPIRVIQLIYNSGDVKGPQTVAFNLPNDERIVKDRGTSMVMLKNVSEAKFKN 544
Y+ KD P + G P + N+PN + I +D G V L NV A +
Sbjct: 374 YE-KDTFLRPDFTSLDVLGFGSSGIPAGI--NIPNYDEIRQDEGFKNVSLGNVLSAHSAD 430
Query: 545 ILRPIADVCIRKEQQEL---VDFDSFFTHNICHECC-HGIGPHSITLPDG-----RQSTV 595
+ I + +E EL + SF HE HG G I PDG +S V
Sbjct: 431 --QKI--TFLTEEDAELYSKLKAPSFEVQVGLHELLGHGSGKLFIKKPDGSYNFDHKSVV 486
Query: 596 RLE------------------LQELHSAMEEAKADIVGLWALKFLIGRDLL 628
E EL S+ EE +A+ VG++ + +D+L
Sbjct: 487 NTETGEKIQSWYTEGETWSTKFAELSSSYEECRAECVGIY---LCLNKDVL 534
>sp|Q0TDW3|IDI_ECOL5 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=idi PE=3 SV=1
Length = 182
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPGMW S GH G+S+ + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGMWTNSVCGHPQLGESNEEAVIRRCRYELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPL---EAFTLQQTEVSAV 126
+ E ++ + + + NE V+ T + + + E Q +++AV
Sbjct: 91 EITPP--ESIYPDFRYRATDPNGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLAAV 147
>sp|Q5NWG5|IDI2_AROAE Isopentenyl-diphosphate Delta-isomerase 2 OS=Aromatoleum aromaticum
(strain EbN1) GN=idi2 PE=3 SV=1
Length = 189
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 4 VHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRE 63
H+ G HR ++ ++F +S L+LQRRA K G+W + H + S +A+R
Sbjct: 23 AHQRGALHRAISIFVF-DSHSRLMLQRRAAGKYHSGGLWSNTCCSHPRPNEESADAARRR 81
Query: 64 LQEELGINLP-KDAFEFVFTFLQQNVINDGKFINNEFADVYLVT-----TLNP 110
L+EE+G++ K AF FV+ + G I +EF V+ LNP
Sbjct: 82 LREEMGVDCELKKAFSFVY----RTKFGSG-LIEHEFDHVFFGNHDGRPVLNP 129
>sp|Q39472|IDI1_CLABR Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri
GN=IPI1 PE=2 SV=2
Length = 287
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 19/144 (13%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLI---------SAQ 61
HR + ++F S ELLLQ+R+ K ++P +W + H +S LI +AQ
Sbjct: 107 HRAFSVFLF-NSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENCLGVRNAAQ 165
Query: 62 RELQEELGI---NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTL 118
R+L +ELGI +LP D F + + +DGK+ +E YL+ + + L+
Sbjct: 166 RKLLDELGIPAEDLPVDQF-IPLSRILYKAPSDGKWGEHELD--YLLFIIRDVNLDP--- 219
Query: 119 QQTEVSAVKYIAYEEYKNLLAKDD 142
EV+ VKY+ ++ K LL K D
Sbjct: 220 NPDEVAEVKYMNRDDLKELLRKAD 243
>sp|A1R1M6|IDI_ARTAT Isopentenyl-diphosphate Delta-isomerase OS=Arthrobacter aurescens
(strain TC1) GN=idi PE=3 SV=1
Length = 184
Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 25 ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFL 84
E+LL RR+ K +WPG+W S GH G+ + R Q ELG++ K E V
Sbjct: 46 EVLLTRRSPEKKTWPGVWTNSFCGHPGPGEEFEDAILRRAQFELGVDANK--IELVLPHF 103
Query: 85 QQNVINDGKFINNEFADVY---LVTTLNPIPLE 114
+ I+ + NE VY + LNP P E
Sbjct: 104 RYRAIDPTGIVENEVCPVYVARITGVLNPNPAE 136
>sp|P72002|IDI_MYCTU Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium
tuberculosis GN=idi PE=3 SV=1
Length = 203
Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++++F + +LL+ RRA K +WP +W S GH G+S + +R L ELG
Sbjct: 40 HLAFSSYVF-DLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGESLPGAIRRRLAAELG- 97
Query: 71 NLPKDAFEFVFT-FLQQNVINDGKFINNEFADVYLVTT-LNPIPLEAFTLQQTEVSAVKY 128
L D + + F + + DG + NE VY V P P EV A+++
Sbjct: 98 -LTPDRVDLILPGFRYRAAMADGT-VENEICPVYRVQVDQQPRP------NSDEVDAIRW 149
Query: 129 IAYEEY 134
+++E++
Sbjct: 150 LSWEQF 155
>sp|A5U3A5|IDI_MYCTA Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium
tuberculosis (strain ATCC 25177 / H37Ra) GN=idi PE=3
SV=1
Length = 203
Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++++F + +LL+ RRA K +WP +W S GH G+S + +R L ELG
Sbjct: 40 HLAFSSYVF-DLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGESLPGAIRRRLAAELG- 97
Query: 71 NLPKDAFEFVFT-FLQQNVINDGKFINNEFADVYLVTT-LNPIPLEAFTLQQTEVSAVKY 128
L D + + F + + DG + NE VY V P P EV A+++
Sbjct: 98 -LTPDRVDLILPGFRYRAAMADGT-VENEICPVYRVQVDQQPRP------NSDEVDAIRW 149
Query: 129 IAYEEY 134
+++E++
Sbjct: 150 LSWEQF 155
>sp|Q7N0A6|IDI2_PHOLL Isopentenyl-diphosphate Delta-isomerase 2 OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=idi2 PE=3
SV=1
Length = 177
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 2 SEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQ 61
+++H+ G HR + ++F ++ LLLQ+RA K G+W S GH G++ +A
Sbjct: 21 ADIHQKGMLHRAFSIFVF-DNKGNLLLQKRAATKYHSAGLWTNSCCGHPRVGEALEAAAH 79
Query: 62 RELQEELGINLP-KDAFEFVF-TFLQQNVI 89
R L EE+G + P K F++ L N+I
Sbjct: 80 RRLGEEMGFDCPLKKVSSFIYHAILPNNLI 109
>sp|C1AP18|IDI_MYCBT Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis
(strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=idi
PE=3 SV=1
Length = 176
Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++++F + +LL+ RRA K +WP +W S GH G+S + +R L ELG
Sbjct: 40 HLAFSSYVF-DLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGESLPGAIRRRLAAELG- 97
Query: 71 NLPKDAFEFVFT-FLQQNVINDGKFINNEFADVYLVTT-LNPIPLEAFTLQQTEVSAVKY 128
L D + + F + + DG + NE VY V P P EV A+++
Sbjct: 98 -LTPDRVDLILPGFRYRAAMADGT-VENEICPVYRVQVDQQPRP------NSDEVDAIRW 149
Query: 129 IAYEEY 134
+++E++
Sbjct: 150 LSWEQF 155
>sp|A1KJG2|IDI_MYCBP Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis
(strain BCG / Pasteur 1173P2) GN=idi PE=3 SV=1
Length = 176
Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++++F + +LL+ RRA K +WP +W S GH G+S + +R L ELG
Sbjct: 40 HLAFSSYVF-DLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGESLPGAIRRRLAAELG- 97
Query: 71 NLPKDAFEFVFT-FLQQNVINDGKFINNEFADVYLVTT-LNPIPLEAFTLQQTEVSAVKY 128
L D + + F + + DG + NE VY V P P EV A+++
Sbjct: 98 -LTPDRVDLILPGFRYRAAMADGT-VENEICPVYRVQVDQQPRP------NSDEVDAIRW 149
Query: 129 IAYEEY 134
+++E++
Sbjct: 150 LSWEQF 155
>sp|Q39664|IDI2_CLAXA Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana
GN=IPI2 PE=3 SV=1
Length = 290
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 19/144 (13%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLI---------SAQ 61
HR ++F S ELLLQ+R+ K ++P +W + H +S LI +AQ
Sbjct: 110 HRAFTVFLF-NSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQ 168
Query: 62 RELQEELGI---NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTL 118
R+L +ELGI ++P D F V L + +DGK+ +E YL+ + + +
Sbjct: 169 RKLLDELGIPAEDVPVDEFTPVSRMLYK-APSDGKWGEHELD--YLLFIVRDVGIHP--- 222
Query: 119 QQTEVSAVKYIAYEEYKNLLAKDD 142
EV+ +KY+ E+ K LL K D
Sbjct: 223 NPDEVADIKYVNREQLKELLRKAD 246
>sp|Q5LWT6|IDI_RUEPO Isopentenyl-diphosphate Delta-isomerase OS=Ruegeria pomeroyi
(strain ATCC 700808 / DSM 15171 / DSS-3) GN=idi PE=3
SV=1
Length = 180
Score = 51.6 bits (122), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 12/148 (8%)
Query: 3 EVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQR 62
E H G H+ V+ +FA ++L+QRRA K PG+W + H +S+ A R
Sbjct: 20 EAHEKGLKHKAVS--VFAVRDMDILIQRRALGKYHTPGLWANTCCTHPDWDESASTCAVR 77
Query: 63 ELQEELGIN--LPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQ 120
L+EELGI P E+ + +G + NE DV+L P+ +
Sbjct: 78 RLREELGITGLYP----EYRHRLEYHADVGNG-MVENEVVDVFLAHVRGPLQV---VPNP 129
Query: 121 TEVSAVKYIAYEEYKNLLAKDDPSFVPY 148
EV +++I Y + + + F P+
Sbjct: 130 DEVMEIRWIGYHDLLAEVQRYPERFTPW 157
>sp|B7UHT8|IDI_ECO27 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O127:H6
(strain E2348/69 / EPEC) GN=idi PE=3 SV=1
Length = 182
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+S+ + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQLGESNAEAVIRRCRYELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPL---EAFTLQQTEVSAV 126
+ E ++ + + + NE V+ T + + + E Q +++AV
Sbjct: 91 EITPP--ESIYPGFRYRATDPNGIVENEVCPVFAALTTSALQINDDEVMDYQWCDLAAV 147
>sp|Q39471|IDI2_CLABR Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri
GN=IPI2 PE=3 SV=2
Length = 286
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 19/144 (13%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLI---------SAQ 61
HR + ++F S ELLLQ+R+ K ++P +W + H +S LI +AQ
Sbjct: 106 HRAFSVFLF-NSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQ 164
Query: 62 RELQEELGI---NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTL 118
R+L +ELGI ++P D F + L + +DGK+ +E YL+ + + A
Sbjct: 165 RKLLDELGIPAEDVPVDEFTPLSRMLYK-APSDGKWGEHELD--YLLFIVRDV---AVHP 218
Query: 119 QQTEVSAVKYIAYEEYKNLLAKDD 142
EV+ +KY+ E+ K LL K D
Sbjct: 219 NPDEVAEIKYVNREQLKELLKKAD 242
>sp|Q7VEU0|IDI_MYCBO Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=idi PE=3 SV=1
Length = 176
Score = 50.4 bits (119), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 25 ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFT-F 83
+LL+ RRA K +WP +W S GH G+S + +R L ELG L D + + F
Sbjct: 53 QLLITRRAATKRTWPAVWTNSCCGHPLPGESLPGAIRRRLAAELG--LTPDRVDLILPGF 110
Query: 84 LQQNVINDGKFINNEFADVYLVTT-LNPIPLEAFTLQQTEVSAVKYIAYEEY 134
+ + DG + NE VY V P P EV A++++++E++
Sbjct: 111 RYRAAMADGT-VENEICPVYRVQVDQQPRP------NSDEVDAIRWLSWEQF 155
>sp|Q1R7E2|IDI_ECOUT Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli (strain
UTI89 / UPEC) GN=idi PE=3 SV=1
Length = 182
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+S+ + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQLGESNEEAVIRRCRYELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPL---EAFTLQQTEVSAV 126
+ E ++ + + + NE V+ T + + + E Q +++AV
Sbjct: 91 EITPP--ESIYPDFRYRATDPNGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLAAV 147
>sp|B7N7D3|IDI_ECOLU Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=idi PE=3 SV=1
Length = 182
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+S+ + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQMGESNEDAVIRRCRFELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTT 107
+ A E V+ + + + NE V+ T
Sbjct: 91 EI--TAPEPVYPDFRYRATDPNGIVENEVCPVFAART 125
>sp|A1AF79|IDI_ECOK1 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O1:K1 /
APEC GN=idi PE=3 SV=1
Length = 182
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+S+ + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQLGESNEEAVIRRCRYELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPL---EAFTLQQTEVSAV 126
+ E ++ + + + NE V+ T + + + E Q +++AV
Sbjct: 91 EITPP--ESIYPDFRYRATDPNGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLAAV 147
>sp|B7MZ42|IDI_ECO81 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O81
(strain ED1a) GN=idi PE=3 SV=1
Length = 182
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+S+ + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQLGESNEEAVIRRCRYELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPL---EAFTLQQTEVSAV 126
+ E ++ + + + NE V+ T + + + E Q +++AV
Sbjct: 91 EITPP--ESIYPDFRYRATDPNGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLAAV 147
>sp|B7MM76|IDI_ECO45 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O45:K1
(strain S88 / ExPEC) GN=idi PE=3 SV=1
Length = 182
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+S+ + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQLGESNEEAVIRRCRYELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPL---EAFTLQQTEVSAV 126
+ E ++ + + + NE V+ T + + + E Q +++AV
Sbjct: 91 EITPP--ESIYPDFRYRATDPNGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLAAV 147
>sp|O48964|IDI1_CAMAC Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata
GN=IPI1 PE=2 SV=1
Length = 235
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 25/147 (17%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLI---------SAQ 61
HR + ++F S ELLLQ+R+ K ++P +W + H +S LI +AQ
Sbjct: 54 HRAFSVFLF-NSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIKENALGARNAAQ 112
Query: 62 RELQEELGI---NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLV---TTLNPIPLEA 115
R+L +ELGI ++P D F + L + +DGK+ +E + + +NP P
Sbjct: 113 RKLLDELGIPAEDVPVDQFIPLGRILYK-APSDGKWGEHELDYLLFIVRDVNVNPNP--- 168
Query: 116 FTLQQTEVSAVKYIAYEEYKNLLAKDD 142
EV+ +KY+ ++ K LL K D
Sbjct: 169 -----DEVADIKYVTRDQLKELLRKAD 190
>sp|Q83MJ9|IDI_SHIFL Isopentenyl-diphosphate Delta-isomerase OS=Shigella flexneri GN=idi
PE=3 SV=1
Length = 182
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+SS + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQLGESSEDAVIRRCRYELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTT 107
+ E ++ + + + NE V+ T
Sbjct: 91 EITPP--ESIYPDFRYRATDPRGIVENEVCPVFAART 125
>sp|Q0T107|IDI_SHIF8 Isopentenyl-diphosphate Delta-isomerase OS=Shigella flexneri
serotype 5b (strain 8401) GN=idi PE=3 SV=1
Length = 182
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+SS + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQLGESSEDAVIRRCRYELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTT 107
+ E ++ + + + NE V+ T
Sbjct: 91 EITPP--ESIYPDFRYRATDPRGIVENEVCPVFAART 125
>sp|B7NW30|IDI_ECO7I Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O7:K1
(strain IAI39 / ExPEC) GN=idi PE=3 SV=1
Length = 182
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+S+ + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRFELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTT 107
+ A E V+ + + + NE V+ T
Sbjct: 91 EI--TAPEPVYPDFRYRATDPNGIVENEVCPVFAART 125
>sp|O48965|IDI2_CAMAC Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata
GN=IPI2 PE=2 SV=1
Length = 309
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 21/145 (14%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLI---------SAQ 61
HR + ++F S ELLLQ+R+ K ++P +W + H +S L+ +AQ
Sbjct: 128 HRAFSVFLF-NSKYELLLQQRSATKVTFPLVWTNTCCSHPRYRESELVDENALGVRNAAQ 186
Query: 62 RELQEELGI---NLPKDAFEFVFTFLQQNVINDGKFINNEFAD-VYLVTTLNPIPLEAFT 117
R+L +ELGI ++P D F + L + +DGK+ +E ++++ +N P
Sbjct: 187 RKLLDELGIPAEDVPVDQFIPLGRMLYK-APSDGKWGEHELDYLLFIIRDVNVHP----- 240
Query: 118 LQQTEVSAVKYIAYEEYKNLLAKDD 142
EV+ VKY+ ++ K+LL K D
Sbjct: 241 -NPDEVADVKYVNQDQLKDLLRKVD 264
>sp|Q46822|IDI_ECOLI Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli (strain
K12) GN=idi PE=1 SV=1
Length = 182
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+S+ + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTT 107
+ E ++ + + + NE V+ T
Sbjct: 91 EITPP--ESIYPDFRYRATDPSGIVENEVCPVFAART 125
>sp|B1XEH6|IDI_ECODH Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli (strain
K12 / DH10B) GN=idi PE=3 SV=1
Length = 182
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+S+ + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTT 107
+ E ++ + + + NE V+ T
Sbjct: 91 EITPP--ESIYPDFRYRATDPSGIVENEVCPVFAART 125
>sp|C5A0G1|IDI_ECOBW Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli (strain
K12 / MC4100 / BW2952) GN=idi PE=3 SV=1
Length = 182
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+S+ + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTT 107
+ E ++ + + + NE V+ T
Sbjct: 91 EITPP--ESIYPDFRYRATDPSGIVENEVCPVFAART 125
>sp|Q8FE75|IDI_ECOL6 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=idi PE=3 SV=1
Length = 182
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+S+ + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQLGESNEEAVIRRCRYELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTT 107
+ E ++ + + + NE V+ T
Sbjct: 91 EITPP--ESIYPDFRYRATDPNGIVENEVCPVFAART 125
>sp|Q0RBQ7|IDI_FRAAA Isopentenyl-diphosphate Delta-isomerase OS=Frankia alni (strain
ACN14a) GN=idi PE=3 SV=1
Length = 194
Score = 49.3 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++++F ++ LL+ RRA K +WPG+W S GH G+ ++ +R + +EL +
Sbjct: 42 HLAFSSYLF-DAAGRLLVTRRALGKRTWPGVWTNSCCGHPRPGEDIALAVERRVDQELRL 100
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTL-NPIPLEAFTLQQTEVSAVKYI 129
L D + F + DG + NE VY+ + +P P A EV +++
Sbjct: 101 AL-TDLHCALPDFAYRATAADG-LVENEVCPVYVARAVGDPDPDPA------EVVEWRWV 152
Query: 130 AYEEYKNLLAKDDPSFVPYDVN--GGYGQ 156
+E Y+ + P+ V+ +GQ
Sbjct: 153 DWESYRQAALAAPWALSPWSVDQMTAFGQ 181
>sp|Q32BV2|IDI_SHIDS Isopentenyl-diphosphate Delta-isomerase OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=idi PE=3 SV=1
Length = 182
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+S+ + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTT 107
+ E ++ + + + NE V+ T
Sbjct: 91 EITPP--ESIYPDFRYRATDPNGIVENEVCPVFAART 125
>sp|Q3YXY0|IDI_SHISS Isopentenyl-diphosphate Delta-isomerase OS=Shigella sonnei (strain
Ss046) GN=idi PE=3 SV=1
Length = 182
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+S+ + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTT 107
+ E ++ + + + NE V+ T
Sbjct: 91 EITPP--ESIYPDFRYRATDPNGIVENEVCPVFAART 125
>sp|B1ITB3|IDI_ECOLC Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli (strain
ATCC 8739 / DSM 1576 / Crooks) GN=idi PE=3 SV=1
Length = 182
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+S+ + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTT 107
+ E ++ + + + NE V+ T
Sbjct: 91 EITPP--ESIYPDFRYRATDPSGIVENEVCPVFAART 125
>sp|B7LYF3|IDI_ECO8A Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O8
(strain IAI1) GN=idi PE=3 SV=1
Length = 182
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+S+ + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTT 107
+ E ++ + + + NE V+ T
Sbjct: 91 EITPP--ESIYPDFRYRATDPNGIVENEVCPVFAART 125
>sp|B5YQ81|IDI_ECO5E Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O157:H7
(strain EC4115 / EHEC) GN=idi PE=3 SV=1
Length = 182
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+S+ + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTT 107
+ E ++ + + + NE V+ T
Sbjct: 91 EITPP--ESIYPDFRYRATDPNGIVENEVCPVFAART 125
>sp|Q8XD58|IDI_ECO57 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O157:H7
GN=idi PE=3 SV=1
Length = 182
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+S+ + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTT 107
+ E ++ + + + NE V+ T
Sbjct: 91 EITPP--ESIYPDFRYRATDPNGIVENEVCPVFAART 125
>sp|A7ZQZ8|IDI_ECO24 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=idi PE=3 SV=1
Length = 182
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70
H ++W+F Q LL+ RRA K +WPG+W S GH G+S+ + R + ELG+
Sbjct: 32 HLAFSSWLFNAKGQ-LLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV 90
Query: 71 NLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTT 107
+ E ++ + + + NE V+ T
Sbjct: 91 EITPP--ESIYPDFRYRATDPNGIVENEVCPVFAART 125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 276,184,012
Number of Sequences: 539616
Number of extensions: 11663093
Number of successful extensions: 30130
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 30001
Number of HSP's gapped (non-prelim): 164
length of query: 753
length of database: 191,569,459
effective HSP length: 125
effective length of query: 628
effective length of database: 124,117,459
effective search space: 77945764252
effective search space used: 77945764252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)