Query 004451
Match_columns 753
No_of_seqs 327 out of 2072
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 23:39:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02791 Nudix hydrolase homol 100.0 6E-167 1E-171 1441.4 64.0 747 2-752 23-769 (770)
2 PF03571 Peptidase_M49: Peptid 100.0 7E-124 2E-128 1045.1 31.3 449 286-753 2-524 (549)
3 KOG3675 Dipeptidyl peptidase I 100.0 3.9E-77 8.5E-82 615.8 9.7 323 374-753 10-374 (417)
4 TIGR02150 IPP_isom_1 isopenten 99.9 1.1E-20 2.3E-25 185.1 15.6 137 2-149 17-154 (158)
5 cd02885 IPP_Isomerase Isopente 99.8 1.4E-20 3E-25 185.5 14.2 140 2-149 20-160 (165)
6 PLN02552 isopentenyl-diphospha 99.8 4.7E-20 1E-24 191.5 17.5 139 6-148 51-215 (247)
7 cd04692 Nudix_Hydrolase_33 Mem 99.8 7.5E-20 1.6E-24 176.1 15.6 137 10-150 1-140 (144)
8 cd03676 Nudix_hydrolase_3 Memb 99.8 1.2E-19 2.6E-24 181.4 16.5 142 2-150 23-169 (180)
9 PRK03759 isopentenyl-diphospha 99.8 3.2E-19 6.9E-24 179.1 15.4 140 2-149 24-164 (184)
10 COG1443 Idi Isopentenyldiphosp 99.8 6.3E-19 1.4E-23 168.8 9.5 139 3-148 23-164 (185)
11 cd04697 Nudix_Hydrolase_38 Mem 99.7 2.6E-17 5.5E-22 154.9 14.3 120 12-147 1-120 (126)
12 cd04693 Nudix_Hydrolase_34 Mem 99.7 2.6E-17 5.6E-22 154.7 14.3 122 12-148 1-122 (127)
13 PRK15393 NUDIX hydrolase YfcD; 99.7 8E-17 1.7E-21 161.1 14.6 124 2-139 28-151 (180)
14 PRK15434 GDP-mannose mannosyl 99.7 3.8E-16 8.2E-21 152.9 15.2 121 9-137 15-137 (159)
15 cd03430 GDPMH GDP-mannose glyc 99.7 5.3E-16 1.1E-20 149.6 15.0 120 10-137 11-132 (144)
16 cd04679 Nudix_Hydrolase_20 Mem 99.7 1.2E-15 2.6E-20 142.9 14.3 115 11-138 2-116 (125)
17 KOG0142 Isopentenyl pyrophosph 99.7 1.2E-16 2.7E-21 155.6 7.6 147 6-168 47-205 (225)
18 cd04683 Nudix_Hydrolase_24 Mem 99.6 2.2E-15 4.9E-20 139.8 14.0 115 13-139 2-116 (120)
19 PRK15472 nucleoside triphospha 99.6 1.5E-15 3.2E-20 145.6 13.0 121 10-137 2-125 (141)
20 cd04682 Nudix_Hydrolase_23 Mem 99.6 1.6E-15 3.5E-20 141.6 12.8 113 11-137 1-114 (122)
21 cd04678 Nudix_Hydrolase_19 Mem 99.6 3.2E-15 7E-20 140.7 14.0 122 11-147 2-123 (129)
22 cd04684 Nudix_Hydrolase_25 Con 99.6 6.9E-15 1.5E-19 137.5 14.8 116 13-137 2-117 (128)
23 PF00293 NUDIX: NUDIX domain; 99.6 3.3E-15 7.1E-20 140.2 12.6 123 10-141 1-123 (134)
24 cd03671 Ap4A_hydrolase_plant_l 99.6 1E-14 2.3E-19 140.9 15.7 122 10-139 2-133 (147)
25 cd04673 Nudix_Hydrolase_15 Mem 99.6 1E-14 2.2E-19 135.4 14.2 113 13-137 2-114 (122)
26 cd04691 Nudix_Hydrolase_32 Mem 99.6 9.9E-15 2.1E-19 135.6 13.9 109 14-140 3-111 (117)
27 cd04681 Nudix_Hydrolase_22 Mem 99.6 7.3E-15 1.6E-19 138.3 13.1 111 13-135 3-113 (130)
28 cd04694 Nudix_Hydrolase_35 Mem 99.6 1.5E-14 3.3E-19 139.3 15.5 126 12-140 2-134 (143)
29 cd04696 Nudix_Hydrolase_37 Mem 99.6 1.1E-14 2.4E-19 136.5 13.9 112 12-137 3-114 (125)
30 cd04700 DR1025_like DR1025 fro 99.6 2.2E-14 4.8E-19 138.0 15.4 119 9-141 11-129 (142)
31 PLN02325 nudix hydrolase 99.6 1.9E-14 4.1E-19 138.9 14.7 119 10-138 8-126 (144)
32 cd03424 ADPRase_NUDT5 ADP-ribo 99.6 2.1E-14 4.5E-19 136.6 14.5 118 11-141 2-119 (137)
33 cd03426 CoAse Coenzyme A pyrop 99.6 1.1E-14 2.4E-19 142.5 12.8 115 11-137 2-118 (157)
34 PRK09438 nudB dihydroneopterin 99.6 2.5E-14 5.5E-19 138.2 14.7 117 10-139 6-131 (148)
35 cd04687 Nudix_Hydrolase_28 Mem 99.6 3.6E-14 7.8E-19 133.6 15.1 120 12-137 2-121 (128)
36 cd04664 Nudix_Hydrolase_7 Memb 99.6 1.7E-14 3.7E-19 135.8 12.7 115 12-139 2-120 (129)
37 cd03674 Nudix_Hydrolase_1 Memb 99.6 2.9E-14 6.2E-19 136.4 14.0 117 11-137 2-123 (138)
38 COG1051 ADP-ribose pyrophospha 99.6 1.8E-14 3.9E-19 139.1 12.2 114 10-137 9-122 (145)
39 cd03673 Ap6A_hydrolase Diadeno 99.6 4.5E-14 9.8E-19 132.5 13.8 114 12-139 2-118 (131)
40 cd04689 Nudix_Hydrolase_30 Mem 99.5 1.1E-13 2.4E-18 129.6 14.8 112 11-135 1-112 (125)
41 cd04699 Nudix_Hydrolase_39 Mem 99.5 7.5E-14 1.6E-18 130.7 13.7 115 12-139 2-116 (129)
42 cd04677 Nudix_Hydrolase_18 Mem 99.5 4.5E-14 9.8E-19 133.1 12.2 116 10-139 6-124 (132)
43 cd03675 Nudix_Hydrolase_2 Cont 99.5 1.1E-13 2.4E-18 131.1 14.9 112 13-139 2-113 (134)
44 cd04680 Nudix_Hydrolase_21 Mem 99.5 4.7E-14 1E-18 130.6 12.1 108 13-138 2-109 (120)
45 PRK00714 RNA pyrophosphohydrol 99.5 1.7E-13 3.6E-18 134.1 16.5 121 10-139 7-137 (156)
46 cd03427 MTH1 MutT homolog-1 (M 99.5 8.9E-14 1.9E-18 132.2 12.5 110 12-137 2-111 (137)
47 cd04671 Nudix_Hydrolase_13 Mem 99.5 1.5E-13 3.3E-18 129.0 13.5 107 13-135 2-108 (123)
48 cd04688 Nudix_Hydrolase_29 Mem 99.5 1.9E-13 4.1E-18 128.2 13.9 113 11-136 2-117 (126)
49 cd04690 Nudix_Hydrolase_31 Mem 99.5 1.5E-13 3.2E-18 127.2 12.4 107 14-136 3-109 (118)
50 cd03429 NADH_pyrophosphatase N 99.5 1.1E-13 2.3E-18 131.4 11.5 106 13-137 2-107 (131)
51 cd04670 Nudix_Hydrolase_12 Mem 99.5 1.9E-13 4.1E-18 128.4 12.5 112 11-137 2-113 (127)
52 cd04666 Nudix_Hydrolase_9 Memb 99.5 5.8E-13 1.3E-17 124.9 15.4 114 13-139 2-117 (122)
53 cd04672 Nudix_Hydrolase_14 Mem 99.5 4.2E-13 9.1E-18 125.5 13.9 113 11-139 2-114 (123)
54 cd04695 Nudix_Hydrolase_36 Mem 99.5 4.9E-13 1.1E-17 126.6 14.2 111 14-138 2-115 (131)
55 cd03428 Ap4A_hydrolase_human_l 99.5 3.4E-13 7.4E-18 126.9 12.8 113 12-139 3-117 (130)
56 cd04685 Nudix_Hydrolase_26 Mem 99.5 6.1E-13 1.3E-17 126.6 13.8 120 12-137 1-123 (133)
57 cd04511 Nudix_Hydrolase_4 Memb 99.5 4.9E-13 1.1E-17 126.4 13.0 113 2-135 5-117 (130)
58 PRK05379 bifunctional nicotina 99.5 7.2E-13 1.6E-17 145.3 15.8 116 11-137 203-322 (340)
59 cd04676 Nudix_Hydrolase_17 Mem 99.5 5.5E-13 1.2E-17 124.4 12.7 113 12-138 3-118 (129)
60 cd04669 Nudix_Hydrolase_11 Mem 99.5 5.5E-13 1.2E-17 124.6 12.1 107 14-137 3-114 (121)
61 cd03672 Dcp2p mRNA decapping e 99.4 1E-12 2.2E-17 127.0 12.8 111 13-140 3-114 (145)
62 cd04667 Nudix_Hydrolase_10 Mem 99.4 1.6E-12 3.6E-17 119.4 13.3 95 22-139 9-103 (112)
63 PLN02839 nudix hydrolase 99.4 2.7E-12 5.8E-17 138.4 16.5 166 6-182 198-368 (372)
64 cd04686 Nudix_Hydrolase_27 Mem 99.4 2.6E-12 5.7E-17 121.8 14.5 112 13-136 2-118 (131)
65 PRK10546 pyrimidine (deoxy)nuc 99.4 2.6E-12 5.6E-17 121.7 14.4 106 15-137 7-112 (135)
66 PRK00241 nudC NADH pyrophospha 99.4 1.9E-12 4.1E-17 136.4 13.6 106 12-137 133-238 (256)
67 cd03425 MutT_pyrophosphohydrol 99.4 3.3E-12 7.2E-17 117.9 12.9 107 14-137 4-110 (124)
68 cd02883 Nudix_Hydrolase Nudix 99.4 4.2E-12 9.2E-17 116.2 13.3 110 13-136 2-111 (123)
69 PRK10776 nucleoside triphospha 99.4 5.2E-12 1.1E-16 118.0 13.4 107 14-137 7-113 (129)
70 cd04661 MRP_L46 Mitochondrial 99.4 5.2E-12 1.1E-16 120.0 11.7 107 22-139 11-122 (132)
71 TIGR00586 mutt mutator mutT pr 99.3 1.6E-11 3.5E-16 114.9 13.1 108 13-137 6-113 (128)
72 PRK11762 nudE adenosine nucleo 99.3 3.1E-11 6.8E-16 121.3 15.7 115 13-141 49-163 (185)
73 TIGR00052 nudix-type nucleosid 99.3 1.6E-11 3.4E-16 123.5 13.3 121 12-141 45-169 (185)
74 PRK10707 putative NUDIX hydrol 99.3 3.8E-11 8.3E-16 121.1 15.3 105 22-138 42-147 (190)
75 cd04662 Nudix_Hydrolase_5 Memb 99.3 3.3E-11 7.2E-16 113.0 12.5 69 13-83 2-74 (126)
76 cd03670 ADPRase_NUDT9 ADP-ribo 99.2 6.7E-11 1.5E-15 118.3 11.9 111 25-141 50-175 (186)
77 TIGR02705 nudix_YtkD nucleosid 99.2 4.1E-10 8.8E-15 109.7 15.9 122 13-159 26-148 (156)
78 PRK10729 nudF ADP-ribose pyrop 99.2 3.1E-10 6.7E-15 115.6 15.2 120 13-141 51-175 (202)
79 cd04665 Nudix_Hydrolase_8 Memb 99.2 3.3E-10 7.1E-15 105.7 12.8 101 13-134 2-102 (118)
80 PLN02709 nudix hydrolase 99.2 4.3E-10 9.3E-15 115.1 14.0 118 9-136 31-154 (222)
81 PRK15009 GDP-mannose pyrophosp 99.1 9.2E-10 2E-14 111.2 15.6 120 12-141 46-170 (191)
82 cd04674 Nudix_Hydrolase_16 Mem 99.1 5.2E-10 1.1E-14 104.2 12.0 56 25-83 16-71 (118)
83 PRK08999 hypothetical protein; 99.1 5.4E-10 1.2E-14 121.3 13.5 108 13-137 7-114 (312)
84 COG2816 NPY1 NTP pyrophosphohy 99.0 2.7E-10 5.9E-15 118.9 6.3 108 12-139 145-252 (279)
85 KOG4313 Thiamine pyrophosphoki 98.8 4.8E-09 1E-13 105.8 6.0 161 18-188 140-304 (306)
86 cd04663 Nudix_Hydrolase_6 Memb 98.8 7.2E-08 1.6E-12 90.8 12.7 51 14-72 3-55 (126)
87 COG0494 MutT NTP pyrophosphohy 98.8 5.1E-08 1.1E-12 91.3 11.1 119 13-138 13-135 (161)
88 PLN03143 nudix hydrolase; Prov 98.7 1.5E-07 3.3E-12 100.4 14.1 123 13-141 130-269 (291)
89 KOG3084 NADH pyrophosphatase I 98.7 1.8E-08 3.9E-13 105.6 5.5 111 12-139 188-300 (345)
90 KOG2839 Diadenosine and diphos 98.7 1.6E-07 3.6E-12 88.5 10.4 117 10-139 8-127 (145)
91 KOG3069 Peroxisomal NUDIX hydr 98.6 2.4E-07 5.3E-12 93.7 9.9 117 11-136 43-162 (246)
92 cd03431 DNA_Glycosylase_C DNA 98.4 3.4E-06 7.3E-11 77.4 12.9 100 15-137 6-105 (118)
93 KOG0648 Predicted NUDIX hydrol 98.4 1.8E-07 3.8E-12 98.6 4.0 120 12-141 116-235 (295)
94 KOG3041 Nucleoside diphosphate 98.3 1.4E-05 3E-10 78.9 13.2 111 22-140 84-197 (225)
95 COG4119 Predicted NTP pyrophos 97.8 0.00028 6E-09 65.0 11.3 119 11-141 3-139 (161)
96 PF14815 NUDIX_4: NUDIX domain 97.5 0.0002 4.4E-09 66.0 5.7 102 16-137 2-103 (114)
97 COG4112 Predicted phosphoester 96.3 0.037 8.1E-07 53.4 10.4 115 12-136 62-186 (203)
98 KOG4195 Transient receptor pot 95.3 0.019 4.2E-07 58.0 4.2 38 25-68 140-177 (275)
99 COG4227 Antirestriction protei 92.7 0.12 2.7E-06 53.7 4.2 65 566-638 201-265 (316)
100 KOG4432 Uncharacterized NUDIX 92.2 0.41 8.9E-06 50.7 7.2 95 42-147 81-179 (405)
101 KOG4432 Uncharacterized NUDIX 91.5 1.2 2.6E-05 47.3 9.6 96 42-144 286-383 (405)
102 PF13869 NUDIX_2: Nucleotide h 91.2 1 2.2E-05 45.3 8.6 58 7-72 40-99 (188)
103 PRK10880 adenine DNA glycosyla 89.9 1.5 3.2E-05 48.7 9.3 51 11-71 230-280 (350)
104 COG4111 Uncharacterized conser 88.3 5.5 0.00012 41.6 11.3 151 44-202 48-257 (322)
105 PF14443 DBC1: DBC1 85.2 3.4 7.5E-05 38.9 7.3 48 39-86 23-73 (126)
106 KOG2937 Decapping enzyme compl 84.9 0.18 3.9E-06 54.3 -1.4 55 13-73 84-138 (348)
107 KOG3675 Dipeptidyl peptidase I 82.9 0.59 1.3E-05 50.8 1.4 39 191-229 22-63 (417)
108 KOG1689 mRNA cleavage factor I 79.7 4.5 9.7E-05 39.7 6.0 56 7-70 66-123 (221)
109 cd04278 ZnMc_MMP Zinc-dependen 77.9 0.85 1.8E-05 44.5 0.6 17 568-584 107-123 (157)
110 cd04279 ZnMc_MMP_like_1 Zinc-d 75.6 0.95 2.1E-05 44.0 0.2 17 568-584 104-120 (156)
111 cd04268 ZnMc_MMP_like Zinc-dep 74.9 0.96 2.1E-05 44.1 0.0 18 567-584 93-110 (165)
112 PF00413 Peptidase_M10: Matrix 73.0 1 2.2E-05 43.3 -0.3 18 567-584 104-121 (154)
113 cd04277 ZnMc_serralysin_like Z 71.8 1.2 2.7E-05 44.6 -0.1 19 566-584 111-129 (186)
114 KOG4548 Mitochondrial ribosoma 70.9 20 0.00043 37.7 8.4 44 25-72 140-184 (263)
115 smart00235 ZnMc Zinc-dependent 66.9 1.7 3.7E-05 41.3 -0.2 16 570-585 88-103 (140)
116 cd00203 ZnMc Zinc-dependent me 63.9 2.3 5E-05 41.4 0.1 18 566-583 94-111 (167)
117 cd04327 ZnMc_MMP_like_3 Zinc-d 57.4 3.2 6.9E-05 42.2 -0.3 19 567-585 91-109 (198)
118 PF09471 Peptidase_M64: IgA Pe 57.3 3.2 7E-05 44.3 -0.3 16 567-582 215-230 (264)
119 TIGR01084 mutY A/G-specific ad 53.4 30 0.00066 37.2 6.4 34 11-45 226-259 (275)
120 PF13688 Reprolysin_5: Metallo 52.3 4.4 9.5E-05 40.8 -0.2 17 566-582 140-156 (196)
121 PF13582 Reprolysin_3: Metallo 51.4 4.5 9.8E-05 37.4 -0.3 13 570-582 109-121 (124)
122 cd04271 ZnMc_ADAM_fungal Zinc- 46.4 6.8 0.00015 40.9 0.1 13 570-582 147-159 (228)
123 cd04276 ZnMc_MMP_like_2 Zinc-d 43.9 7.6 0.00017 39.7 -0.0 17 568-584 116-132 (197)
124 cd04270 ZnMc_TACE_like Zinc-de 43.2 8 0.00017 40.8 0.0 16 567-582 166-181 (244)
125 PF13583 Reprolysin_4: Metallo 42.3 8.3 0.00018 39.6 -0.0 16 569-584 138-153 (206)
126 PF12388 Peptidase_M57: Dual-a 39.9 11 0.00023 39.0 0.3 15 568-582 133-147 (211)
127 cd04280 ZnMc_astacin_like Zinc 38.5 9.6 0.00021 38.2 -0.2 18 568-585 74-91 (180)
128 PRK13910 DNA glycosylase MutY; 37.5 39 0.00085 36.7 4.2 29 13-45 188-216 (289)
129 PF13574 Reprolysin_2: Metallo 36.8 9.1 0.0002 38.1 -0.7 18 567-584 110-127 (173)
130 cd04267 ZnMc_ADAM_like Zinc-de 36.7 12 0.00027 37.4 0.2 16 568-583 133-148 (192)
131 cd04283 ZnMc_hatching_enzyme Z 36.0 11 0.00024 38.0 -0.2 19 568-586 77-95 (182)
132 PF02031 Peptidase_M7: Strepto 34.1 11 0.00023 35.8 -0.7 14 569-582 78-91 (132)
133 PF01400 Astacin: Astacin (Pep 34.0 12 0.00025 38.0 -0.5 19 568-586 79-97 (191)
134 cd04281 ZnMc_BMP1_TLD Zinc-dep 31.7 15 0.00033 37.6 -0.1 18 569-586 88-105 (200)
135 PF05572 Peptidase_M43: Pregna 30.1 16 0.00034 35.8 -0.3 18 568-585 69-86 (154)
136 PF11350 DUF3152: Protein of u 30.0 24 0.00052 36.1 1.0 17 570-586 141-157 (203)
137 PF06114 DUF955: Domain of unk 30.0 14 0.0003 33.1 -0.6 44 569-619 43-86 (122)
138 cd04273 ZnMc_ADAMTS_like Zinc- 29.7 16 0.00035 37.3 -0.3 15 568-582 140-154 (207)
139 COG3824 Predicted Zn-dependent 29.1 21 0.00045 33.4 0.4 14 569-582 110-123 (136)
140 cd04269 ZnMc_adamalysin_II_lik 28.7 21 0.00045 35.9 0.3 15 568-582 131-145 (194)
141 PF03487 IL13: Interleukin-13; 26.7 56 0.0012 24.5 2.1 22 47-68 15-36 (43)
142 cd04282 ZnMc_meprin Zinc-depen 26.3 20 0.00044 37.5 -0.2 18 569-586 121-138 (230)
143 COG5549 Predicted Zn-dependent 25.6 27 0.00058 35.9 0.4 15 568-582 187-201 (236)
144 PRK06393 rpoE DNA-directed RNA 25.1 42 0.0009 28.0 1.4 25 442-466 21-48 (64)
145 PF02128 Peptidase_M36: Fungal 22.7 41 0.00089 37.7 1.2 49 566-619 183-232 (378)
146 cd04272 ZnMc_salivary_gland_MP 22.3 28 0.00061 35.8 -0.1 14 569-582 146-159 (220)
147 PF05548 Peptidase_M11: Gameto 21.4 34 0.00074 37.5 0.3 14 570-583 152-165 (314)
148 PF06262 DUF1025: Possibl zinc 21.2 26 0.00056 31.7 -0.6 31 547-582 57-87 (97)
149 KOG1565 Gelatinase A and relat 21.2 37 0.00081 39.4 0.6 17 568-584 211-227 (469)
150 PF01421 Reprolysin: Reprolysi 20.9 30 0.00064 34.9 -0.3 15 568-582 131-145 (199)
151 PF04298 Zn_peptidase_2: Putat 20.8 36 0.00077 35.4 0.3 15 568-582 89-103 (222)
152 cd04275 ZnMc_pappalysin_like Z 20.7 28 0.00061 36.3 -0.5 19 568-586 137-155 (225)
153 COG3101 Uncharacterized protei 20.0 99 0.0022 29.9 3.0 49 330-390 17-66 (180)
No 1
>PLN02791 Nudix hydrolase homolog
Probab=100.00 E-value=6.4e-167 Score=1441.41 Aligned_cols=747 Identities=78% Similarity=1.234 Sum_probs=693.9
Q ss_pred ccccccCCceEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEE
Q 004451 2 SEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVF 81 (753)
Q Consensus 2 ~~vh~~g~~h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~ 81 (753)
+++|..|.+|++|+|+|++.++++||||||+..|..+||+|+++||||++.||++.+||+||++||+||.+....+..++
T Consensus 23 ~evH~~Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~ 102 (770)
T PLN02791 23 GEVHRDGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLF 102 (770)
T ss_pred HhhccCCCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeee
Confidence 57999999999999999994368999999999999999999998899999999999999999999999997666677777
Q ss_pred EEEeeeecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcCCCCcccCCCCCchhHHHHHH
Q 004451 82 TFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYDVNGGYGQLFNII 161 (753)
Q Consensus 82 ~~~~~~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~~~~~~pw~~~~~~~~~f~~i 161 (753)
.+.+.....++.+.+++++++|.+....+.+..++.++++|+++++|++++|+.+++...+..|+||...+.+..+|++|
T Consensus 103 ~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l~~~~~~fvP~~~~~~~~~~f~~i 182 (770)
T PLN02791 103 VFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSALAKEDPAYVPYDVNGEYGQLFSII 182 (770)
T ss_pred eEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHHhcCCCceeeccccchHHHHHHHH
Confidence 77554443445567889999999876556665677889999999999999999999998889999998888999999999
Q ss_pred HHHhhhhhhhhhHHHHHHHhhhhccccchhhcCCCHHHHHHHHHHHHHhhhccceeeeccCCCCHHHHHHHHhhhcccch
Q 004451 162 SQRYKENTMERSLTLQKQLRRYAHVSLNAELAGLSDADKEALVLVIKAATVMDEIFYLQVWYSNPVLRDWLKEHADASEL 241 (753)
Q Consensus 162 ~~~~~~~~~~~~lell~r~~~~~pv~~~~~f~~Lt~~Ek~yl~~l~~Aa~~g~~I~~~Q~s~e~~~i~~~l~~~~~~~~~ 241 (753)
.+.|......|+.++++++.+|.|+.++.+++.||+.|++++.+|.+||..+++|+|+|++..++.+++.|......+..
T Consensus 183 ~~~~~~~~~~r~~~l~~~l~~~~~~~l~~d~~~l~~~~~~~l~~l~~aa~~~d~~f~~q~~~~~~~~~~~l~~~~~~~~~ 262 (770)
T PLN02791 183 EKRYKVNTEARSLTLQKQLNRYAPVNLEAELTGLSEGDRKALSYIIKAAKILDDIFYEQVWNSNPALRDWLKAHAEASEL 262 (770)
T ss_pred HHHHhcccHHHHHHHHHHhhCcceeEeeeccccCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHhhhcccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877655566
Q ss_pred hHHHHHHhhccCCCCCCCCCCHHHHHHHHhhcccCCCCCCCccccccccccccCCCCCCCCCccCCCCCCHHHHHHHHhh
Q 004451 242 DKLKWMYYLINKSPWSSLDENEAFLTTADSAVKLLPDATKPVNGWKGLEYKASFPLPKPPGANFYPPDMDKMEFELWKSS 321 (753)
Q Consensus 242 ~~~~~~~~~~n~g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gs~yYp~~it~~e~~~~~~~ 321 (753)
.+++|.+|.+|+|||++++.+++|+++.+++++++|.+.+.+..|.+...++-|+..+|+|+||||.|||++||++|.+.
T Consensus 263 ~~~~~~~~~in~gpW~~l~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ga~~YP~d~~~~ef~~~~~~ 342 (770)
T PLN02791 263 DKLKWAYYSINKSPWSCLDENEAFLTTADSAVKLLPGATKSVSGWKGLEYRAAFPVEKPPGANFYPPDMDKMEFELWKSG 342 (770)
T ss_pred chHHHHHHHHhcCcccccCCCCCCcCCcchhhhcccccccccccccccchhccccCCCCCCCCcCCCCCCHHHHHHHHhh
Confidence 67778999999999999999999999999999999988899999988877888887799999999999999999999999
Q ss_pred hchhhhhcccccceeEeecCCCcccCCCcCCcccCCCCccccCCcEEEEeeccccHHHHHHHHHHHHHHhhccCChHHHH
Q 004451 322 LTEKQQEDATSFFTVIKRRSEFNLDSSLSGHIVDATNHSVGSIYDLYSVPYSEEYNSYLTRASELLHKAGDMASSPSLKR 401 (753)
Q Consensus 322 ~~~~~~~~~~~~~t~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~y~g~y~~~l~~v~~~L~~A~~~a~n~~q~~ 401 (753)
+++.+++.+.++||+|+|+.+..+.++...+ ..+... ..|+|++|||+++|+++|++|+.+|++|++||+|++|++
T Consensus 343 ~~~~~~~~~~~~~t~i~r~~~~~~~~~~~~~---~~~~~~-~~~~L~~vpys~~Y~~~l~~i~~~L~~A~~~a~n~~q~~ 418 (770)
T PLN02791 343 LTEKEQEDATGFFTVIKRHSELSLDASDQLD---GSTQTD-TSHDLFSVPYSEEYKPFLKKAAELLHKAGDCADSPSLKR 418 (770)
T ss_pred CChhhHHhhcCCeEEEEeccccccccccccc---cccccC-CCCCEEEecccHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 9888899999999999998754444432211 111111 358899999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCccchhcHhhhccCCeeeeeecccccccccccCccccceeeEEeeCHHHHHHHHHHhhcHHHHHHhCCC
Q 004451 402 LLHSKADAFLSNNYYDSDIAWIELDSELDVTIGPYETYEDAIFGYKATFEAFIGIRDDKATAQVKLFGDNLQVLEQNLPM 481 (753)
Q Consensus 402 ~L~~~~~~f~tg~~~~s~~~Wv~d~~~ve~~iGfiE~Y~Dp~~g~ra~~E~~V~i~d~~~s~~~~~l~~~a~~~~~~lPw 481 (753)
||.+||++|+|++|++||++||+++|+||++|||||||+||+||+||+|||||+|+|+++|+||++|+++||+||++|||
T Consensus 419 ~L~~~a~~F~t~~~~~s~~~Wvk~~~~ve~~iGfiEtY~Dpl~G~ka~fE~fV~i~d~e~t~k~~~~~~~a~~~e~~LP~ 498 (770)
T PLN02791 419 LLKSKAEAFLSNDYYESDIAWMELDSKLDVTIGPYETYEDGLFGYKATFEAFIGIRDDKATAQLKLFGDNLQTLEDNLPL 498 (770)
T ss_pred HHHHHHHHhhccchHHHHHHHHhcCCceeEeeCCceeccCcccCcceeeEEEEEEeCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCCcceeeeeeccCCCCCCcceeecCCCchHHHhhccceeEEecchhhhhhccccccccccccCHhhHhh
Q 004451 482 DNAYKSKDVIAAPIRVIQLIYNSGDVKGPQTVAFNLPNDERIVKDRGTSMVMLKNVSEAKFKNILRPIADVCIRKEQQEL 561 (753)
Q Consensus 482 ~~~~ek~~~~~pd~~~~~vl~~~g~~~~~~~~giNlPN~~~ir~~~G~Knv~l~Nv~~a~~~~~~~~~~~~~i~~~~~~~ 561 (753)
+++|||++|..|||+||||++||||+.|++|||||||||||||+++|||||||+|||+|++++...|++++|++++|+++
T Consensus 499 ~~~~~k~~~~~~~~~~i~v~~~aGd~~~~~pigiNLPN~d~Ir~~~G~K~V~L~Nv~~A~~~~~~~~i~e~~i~~~~~~~ 578 (770)
T PLN02791 499 DDVYKSTNVSAAPIRVIQLLYNSGDVKGPQTVAFNLPNDERIVKERGTSMVMLKNVSEAKFKHILKPIAEVCISEEQKGY 578 (770)
T ss_pred ChhhcccccCCCCCceeehhhhccccCCCCCceeECCCcHHHHhhcCceEeeecchhhhhccccccchhhhcCCHHHHHh
Confidence 99999999999999999999999999888999999999999999999999999999999998887899999999999999
Q ss_pred hcccccchhhhhhhcccCcCCCCcccCCcccccccchhhcccchHHhHHHHHHHHHHHHHHHhCCCCCchhhhHHHHHHH
Q 004451 562 VDFDSFFTHNICHECCHGIGPHSITLPDGRQSTVRLELQELHSAMEEAKADIVGLWALKFLIGRDLLPKSLVKSMYVSFL 641 (753)
Q Consensus 562 ~~~~~~~~~v~lHElgHgsGk~~~~~~~g~~~t~~~~f~~~~s~~EEcRAe~vglyl~~~ll~~g~~~~~~~~~~y~~~l 641 (753)
+++++|++||+||||||||||+++++++|++.||..+||+++|||||||||+||||++.+|+++|++++.+.+++|++||
T Consensus 579 ~~~~af~~~v~lHElgHGsG~~~~~~~~g~~~t~~~~l~~~~s~lEE~RAD~vgLy~l~~l~~~g~l~~~~~~~~Y~~~l 658 (770)
T PLN02791 579 VDFESFFTHTICHECCHGIGPHTITLPDGQKSTVRLELQEVHSALEEAKADIVGLWALHFLIDKGLLSKSLEKSMYVSFL 658 (770)
T ss_pred hccccHHHHHHHHHhhccccccceecCCCCcCcHHHHHHHhcchHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHHHH
Confidence 99999999999999999999998888787778999999999999999999999999999999999998888899999999
Q ss_pred HHHHhhhccCccchhHhHHHHHHHHHhhcCCeEEccCCcEEEeHhhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC
Q 004451 642 AGCFRSVRFGLEESHGKGQALQFNWLFEKEAFILHSDDTFSVDFDKVEGAVESLSTEILTIQARGDKEAASLLLQKYCTM 721 (753)
Q Consensus 642 ~~~~~~l~f~~~qaH~~ar~~i~~~~~~~g~~~~~~~g~~~vD~~ki~~av~~ll~~l~~~ks~gD~~a~~~~~e~~~~v 721 (753)
+|++|+||||.+|||||||++|+|||+++|+|+.++||+|++|++||+.||++||++||+|||+||+++|++||++|++|
T Consensus 659 ~~~~~~vR~GleqAH~~ar~~i~~~~le~G~~~~~~dg~~~vD~~Ki~~av~~ll~~l~~iks~GD~~aa~~l~e~y~~v 738 (770)
T PLN02791 659 AGCFRSIRFGLEEAHGKGQALQFNWLYEKGAFVLHSDGTFSVDFAKVEDAVESLSREILTIQAKGDKAAAISLLQKYATL 738 (770)
T ss_pred HHHHHHhhccccCHHHHHHHHHHHHHHHcCCEEEcCCceEEEcHHHHHHHHHHHHHHHHeeecccCHHHHHHHHHHhccC
Confidence 99999999999999999999999999999998876789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhhccCCCCccccccccccccc
Q 004451 722 TQPLKVALQKLENVQVPVDIAPTFTAVNKLL 752 (753)
Q Consensus 722 ~~~~~~~l~r~~~~~~p~~i~~~f~~~~~~~ 752 (753)
+++|+.+|++++..+|||||+|+|+|++.+|
T Consensus 739 ~~~~~~~l~~~~~~~~pvdi~~~~~~~~~~~ 769 (770)
T PLN02791 739 TPPLRVALEKLEDVQVPVDIVPTFPTAEKLL 769 (770)
T ss_pred CHHHHHHHHHhhhCCCCCCccccccchhhhc
Confidence 9999999999999999999999999998776
No 2
>PF03571 Peptidase_M49: Peptidase family M49; InterPro: IPR005317 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M49 (dipeptidyl-peptidase III family, clan M-). The predicted active site residues occur in the motif HEXXXH which is unlike that in any other family. The dipeptidyl peptidase III aminopeptidases cleave dipeptides from the N-terminal of peptides consisting of four or more amino acids and have a broad specificity.; GO: 0008239 dipeptidyl-peptidase activity, 0006508 proteolysis, 0005737 cytoplasm; PDB: 3T6B_A 3FVY_A 3T6J_A 3CSK_A.
Probab=100.00 E-value=7.4e-124 Score=1045.11 Aligned_cols=449 Identities=25% Similarity=0.348 Sum_probs=352.9
Q ss_pred cccccccccCCC-------CCCC--C-CccCCCCCCHHHHHHHHhhhchhhhhcccccceeEeecCCCc---ccCCCcCC
Q 004451 286 WKGLEYKASFPL-------PKPP--G-ANFYPPDMDKMEFELWKSSLTEKQQEDATSFFTVIKRRSEFN---LDSSLSGH 352 (753)
Q Consensus 286 ~~~~~~~~i~~~-------~~~~--g-s~yYp~~it~~e~~~~~~~~~~~~~~~~~~~~t~~~k~~~~~---~~~~~~~~ 352 (753)
+|+.+++.||++ +.|+ | |+|||++||++|++.|+++| ++++++++||||+|+.+.. +.||+...
T Consensus 2 Lw~~~~~~iy~~~~~~~~LG~p~~~~~s~YY~~~itk~ei~~v~~~l---~~~~i~~eNTRl~K~~~~~yei~~AS~~~~ 78 (549)
T PF03571_consen 2 LWEKIKDAIYSLEPRSLLLGFPSDGGQSTYYSSNITKEEIEAVQKFL---EKKGISPENTRLFKDGDGTYEILVASVETS 78 (549)
T ss_dssp HHCCHHHHCC---CCCTBBSSGCCTSB-TTEETT--HHHHHHHHHCH---HHCT--STTEEEEECCTCEEEEEEE-SSSS
T ss_pred hhHhhhhhhccCCCccccccccCCCCeeeecCCCCCHHHHHHHHHHH---HhcCCchhhceEEecCCCcEEEEecccccC
Confidence 566788888883 3443 3 99999999999999999999 7899999999999987653 67776644
Q ss_pred cccC-CCCccccCCcEEEEeeccccHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHcccC---ccchhcHhhhcc-CC
Q 004451 353 IVDA-TNHSVGSIYDLYSVPYSEEYNSYLTRASELLHKAGDMASSPSLKRLLHSKADAFLSN---NYYDSDIAWIEL-DS 427 (753)
Q Consensus 353 ~~~~-~~~~~~~~g~~~~~~y~g~y~~~l~~v~~~L~~A~~~a~n~~q~~~L~~~~~~f~tg---~~~~s~~~Wv~d-~~ 427 (753)
.... ..+ ....|..+.++| |||+++|++||.+|++|++||+|++|++||++||+||+|| +|++||++||+| +|
T Consensus 79 ~~~~~~~~-~~~~g~~v~~~~-Gdy~~~l~~i~~~L~~A~~~a~N~~q~~~L~~yi~~F~tGs~~~~~~s~~~Wv~D~~p 156 (549)
T PF03571_consen 79 EPPEYTPK-GEFEGKKVKLTY-GDYSPELKKIVEHLEKAAKYAANETQKKMLEKYIESFQTGSLDAHKESQRAWVKDKGP 156 (549)
T ss_dssp SS-TTTTC-ECCTTEEEEEEE-EETHHHHHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHCS-S-
T ss_pred CCCccccc-cccCCcEEEeCC-CchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCC
Confidence 3222 211 123578889988 9999999999999999999999999999999999999999 699999999999 99
Q ss_pred eeeeeecccccccccccCccccceeeEEeeCHHHHHHHHHHhhcHHHHHHhCCCCcccccCCCCCCCcceeeeeeccCCC
Q 004451 428 ELDVTIGPYETYEDAIFGYKATFEAFIGIRDDKATAQVKLFGDNLQVLEQNLPMDNAYKSKDVIAAPIRVIQLIYNSGDV 507 (753)
Q Consensus 428 ~ve~~iGfiE~Y~Dp~~g~ra~~E~~V~i~d~~~s~~~~~l~~~a~~~~~~lPw~~~~ek~~~~~pd~~~~~vl~~~g~~ 507 (753)
+||++||||||||||+ |+||||||||+|+|+++|+||++||++|++|+++|||+++|||++|.+||||||+||+||||+
T Consensus 157 ~VE~~iGFiEtYrDp~-G~rae~EgfVai~d~e~s~k~~~lv~~a~~f~~~LPw~~~fekd~f~~pdftsl~vl~fags~ 235 (549)
T PF03571_consen 157 RVETNIGFIETYRDPF-GVRAEFEGFVAIVDKEESKKLSKLVDNAQEFIDHLPWPKEFEKDKFLAPDFTSLDVLTFAGSG 235 (549)
T ss_dssp SEEEEEEEEE-TTSTT-S-S-EEEEEEEEEEHCCHHHHHHHHHTHHHHHHHSSS-GGGS-SS-----EEEEEEEEEESS-
T ss_pred ceeeeecCceeccCCC-CCccccceeeeccCHHHHHHHHHHHHHHHHHHhcCCCChhhccccCCCCCceEEEEEEecCCC
Confidence 9999999999999996 999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCcceeecCCCchHHHhhccceeEEecchhhhhhccccccccccccCHhhHhhhccc---ccchhhhhhhc-ccCcCCC
Q 004451 508 KGPQTVAFNLPNDERIVKDRGTSMVMLKNVSEAKFKNILRPIADVCIRKEQQELVDFD---SFFTHNICHEC-CHGIGPH 583 (753)
Q Consensus 508 ~~~~~~giNlPN~~~ir~~~G~Knv~l~Nv~~a~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~v~lHEl-gHgsGk~ 583 (753)
+|+|||||||||||+++|||||+|+|||+|+++... + ..||++++++++.+| +|++||+|||| ||||||+
T Consensus 236 ---ip~GINlPNyd~IR~~~GfKnV~L~Nv~~A~~~~~~-~--~~fi~~~d~~~~~~~~~~af~~~v~lHEllGHGsGkl 309 (549)
T PF03571_consen 236 ---IPAGINLPNYDDIRQEEGFKNVSLGNVLSAKFKAIR-P--ITFIDEEDQELFKKYRFDAFFVQVGLHELLGHGSGKL 309 (549)
T ss_dssp -----SEEEE-S-HHHHHHT--EEEEEHHHHCCCCHTSG-G---TTC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCS---
T ss_pred ---CccceeCCChHHHHhhhcceeEEEechhhhhhccCC-C--CcccchhHHHHHHHhcCchHhhhhhHHhhccCcCcce
Confidence 699999999999999999999999999999987764 1 268999999998887 99999999999 9999996
Q ss_pred CcccCCc-----------------------ccccccchhhcccchHHhHHHHHHHHHHH--HHHHh-CCCCCc-hhhhHH
Q 004451 584 SITLPDG-----------------------RQSTVRLELQELHSAMEEAKADIVGLWAL--KFLIG-RDLLPK-SLVKSM 636 (753)
Q Consensus 584 ~~~~~~g-----------------------~~~t~~~~f~~~~s~~EEcRAe~vglyl~--~~ll~-~g~~~~-~~~~~~ 636 (753)
+.-..+| +||||+|+||.+||||||||||||||||| ++||+ ||+.+. +++++.
T Consensus 310 l~~~~~g~~Nfd~~~~~~pltg~~i~s~Y~~geTw~s~Fg~~ast~EECRAe~vglYL~~~~~vLeifg~~~~~~~~dv~ 389 (549)
T PF03571_consen 310 LQETADGTFNFDKENPINPLTGKPITSWYKPGETWDSVFGSLASTYEECRAELVGLYLIADPEVLEIFGYTDKEEADDVI 389 (549)
T ss_dssp -BEETTC-ESS-TTT-BBTTTSSB----B-TT--HHHHHCCCHHHHHHHHHHHHHHHHTTSHHHHHHTT--TCHCHHHHH
T ss_pred eecCCCCcccCCcCCCCCCCCCCCcceeCCCCCcccchhhcccchHHHHHHHHHHhHHhCCHhHHHHcCCCCcccHHHHH
Confidence 4432121 69999999999999999999999999999 89999 888877 488999
Q ss_pred HHHHHHH---HHhhhccC------ccchhHhHHHHHHHHHhhcCC--eE--EccC-C---cEEEeHhhH----HHHHHHH
Q 004451 637 YVSFLAG---CFRSVRFG------LEESHGKGQALQFNWLFEKEA--FI--LHSD-D---TFSVDFDKV----EGAVESL 695 (753)
Q Consensus 637 y~~~l~~---~~~~l~f~------~~qaH~~ar~~i~~~~~~~g~--~~--~~~~-g---~~~vD~~ki----~~av~~l 695 (753)
|++||.| +|++|+|. |+||||||||+|++||+++|. ++ ...+ + .+++||+|| ++|||+|
T Consensus 390 y~~~l~~~~~GL~~Le~y~p~~kkW~QAHmqaRf~Il~~lle~g~~~v~i~~~~~~~~~l~V~~Drski~t~Gr~aig~~ 469 (549)
T PF03571_consen 390 YANWLSMLRAGLRALEFYNPETKKWGQAHMQARFAILRVLLEAGKGFVTIEETKDDKPDLTVKLDRSKIETVGRPAIGEF 469 (549)
T ss_dssp HHHHHHHHHHHHHGGGGEETTTTEES-HHHHHHHHHHHHHHHCSTTSEEEEEECTTSCEEEEEE-GCGTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhheeeCCCCCchhHHhhHHHHHHHHHHHHcCCCeEEEEEecCCCCeEEEEEeHHHHHHHHHHHHHHH
Confidence 9999997 66778772 999999999999999999765 33 3333 2 358899999 9999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcCCCHHHH----HHHHhhhccCCCCcccccccccccccC
Q 004451 696 STEILTIQARGDKEAASLLLQKYCTMTQPLK----VALQKLENVQVPVDIAPTFTAVNKLLQ 753 (753)
Q Consensus 696 l~~l~~~ks~gD~~a~~~~~e~~~~v~~~~~----~~l~r~~~~~~p~~i~~~f~~~~~~~~ 753 (753)
|++||+||||||+++|++||++||.||++++ .|+++++ | |++|||+||+|.
T Consensus 470 L~~LqvyKstaD~~~g~~lye~ys~Vd~~~~~~R~iV~~~k~----P---rk~FvQ~nt~l~ 524 (549)
T PF03571_consen 470 LLKLQVYKSTADVEAGRELYEKYSAVDPEFLKWRDIVLAKKK----P---RKLFVQPNTFLE 524 (549)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHT---HHHHCCHHHHHHT------------EEE--EEEEC
T ss_pred HHHHHHHhhcccHHHHHHHHhhccCCCHHHHHHHHHHHccCC----c---cceEEcceEEEe
Confidence 9999999999999999999999999999875 5777666 8 999999999874
No 3
>KOG3675 consensus Dipeptidyl peptidase III [General function prediction only]
Probab=100.00 E-value=3.9e-77 Score=615.80 Aligned_cols=323 Identities=20% Similarity=0.269 Sum_probs=287.9
Q ss_pred cccHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHcccCccchhcHhhhccCCeeeeeecccccccccccCccccceee
Q 004451 374 EEYNSYLTRASELLHKAGDMASSPSLKRLLHSKADAFLSNNYYDSDIAWIELDSELDVTIGPYETYEDAIFGYKATFEAF 453 (753)
Q Consensus 374 g~y~~~l~~v~~~L~~A~~~a~n~~q~~~L~~~~~~f~tg~~~~s~~~Wv~d~~~ve~~iGfiE~Y~Dp~~g~ra~~E~~ 453 (753)
|||.-.|..+.++|..|.++|+|+ .+|+.||.+| |.||++||||||||||. |.||+||||
T Consensus 10 ~D~~~~~~d~~e~l~~~~p~aan~------~~Y~~hf~kg-------------P~~e~~igFIqtyrdp~-G~r~efEgf 69 (417)
T KOG3675|consen 10 NDIGVSSLDCAEALKLLSPTAANK------MKYVHHFSKG-------------PWYEGLIGFIQTYRDPA-GSRGEFEGF 69 (417)
T ss_pred cchhHHHHHHHHHHHHhChhhhhh------hhhhhhhhcC-------------chhhhhhhhhhhccccc-cccchhhhh
Confidence 999999999999999999999999 7899999888 99999999999999997 999999999
Q ss_pred EEeeCHHHHHHHHHHhhcHHHHHHhCCCCcccccCCCCCCCcceeeeeeccCCCCCCcceeecCCCchHHHhhccceeEE
Q 004451 454 IGIRDDKATAQVKLFGDNLQVLEQNLPMDNAYKSKDVIAAPIRVIQLIYNSGDVKGPQTVAFNLPNDERIVKDRGTSMVM 533 (753)
Q Consensus 454 V~i~d~~~s~~~~~l~~~a~~~~~~lPw~~~~ek~~~~~pd~~~~~vl~~~g~~~~~~~~giNlPN~~~ir~~~G~Knv~ 533 (753)
|+||||++|+||..||.+|++|++.|||..+|||+.|.+||||+|||++||||| +|+|||||||+|||++.|||||
T Consensus 70 VA~vNKe~saKF~~LV~~AE~~l~~lPw~~~~ekd~Fl~pDftsLdvlafagsG---ipAGINIpNy~dirq~egfKnv- 145 (417)
T KOG3675|consen 70 VAVVNKEMSAKFSWLVNNAEQLLPELPWIYALEKDLFLAPDFTQLDVLAFAGSG---IPAGINIPNYTDIRQQEGFKNV- 145 (417)
T ss_pred hhhhhhhhhhhHHHHhhhHhhhhhcCCcchhhhhhhccCCChhHHHHHHhhcCC---cccccCCCCccHHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999999999999999998 6999999999999999999998
Q ss_pred ecchhhhhhccccccccccccCHhhHhhhcccccchhhhhhhc-ccCcCCCCccc--CC---------cccccccchhhc
Q 004451 534 LKNVSEAKFKNILRPIADVCIRKEQQELVDFDSFFTHNICHEC-CHGIGPHSITL--PD---------GRQSTVRLELQE 601 (753)
Q Consensus 534 l~Nv~~a~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~lHEl-gHgsGk~~~~~--~~---------g~~~t~~~~f~~ 601 (753)
.+.+..++|..+++.|++ |||+=- .+.. |. .+|+||++.|+.
T Consensus 146 -------------------------~~~y~~~~f~~~~g~~kl~~~~s~t-~~~~~epe~~~~i~s~yk~~et~~skf~~ 199 (417)
T KOG3675|consen 146 -------------------------AAVYSNMGFYKQFGDTKLLGEGSTT-TVPNFEPEIPKEITSRYKSGETLGSKFGQ 199 (417)
T ss_pred -------------------------HHHHhhhhhHhhcCcceeccccccc-ccCCcCccchHhhhhhhccceeccchhhh
Confidence 234566799999999999 999832 1111 11 158999999999
Q ss_pred ccchHHhHHHHHHHHHHH--HHHHhCCCCCc-hhhhHHHHHHHHH--HHhhhccC------ccchhHhHHHHHHHHHhhc
Q 004451 602 LHSAMEEAKADIVGLWAL--KFLIGRDLLPK-SLVKSMYVSFLAG--CFRSVRFG------LEESHGKGQALQFNWLFEK 670 (753)
Q Consensus 602 ~~s~~EEcRAe~vglyl~--~~ll~~g~~~~-~~~~~~y~~~l~~--~~~~l~f~------~~qaH~~ar~~i~~~~~~~ 670 (753)
+.|++||||||.+||||+ +.++.+|..+. +++++.|++||++ ...+|+|. |+||||||||+|+++++|+
T Consensus 200 ~~s~~eec~ae~~~l~l~l~~~vL~~~~~~~~~~~~vi~vnwl~~~~aglALE~~npe~~~W~QaH~~ARfvi~kv~lEa 279 (417)
T KOG3675|consen 200 IHSSEEECLAESVGLLLLLLRPVLIFFGLGKEEADEVISVNWLSEDRAGLALEFYNPEQKKWGQAHMRARFVIMKVLLEA 279 (417)
T ss_pred ccChHHHHHHHHhhHHHhhcccceeeeccchhhcceeEeeehhhhhhhhhhhhhcCcccccccchhhhhhhhhhhhHHHh
Confidence 999999999999999999 56667555544 4889999999995 22347773 9999999999999999999
Q ss_pred CC-eEE-cc-----CCcEEEeHhhH----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCH-------HHH-HHHHh
Q 004451 671 EA-FIL-HS-----DDTFSVDFDKV----EGAVESLSTEILTIQARGDKEAASLLLQKYCTMTQ-------PLK-VALQK 731 (753)
Q Consensus 671 g~-~~~-~~-----~g~~~vD~~ki----~~av~~ll~~l~~~ks~gD~~a~~~~~e~~~~v~~-------~~~-~~l~r 731 (753)
|. ++. .+ |-.+++||||| ++|+++||++||+||||||+++|.++|+.|++|++ .|+ +||.|
T Consensus 280 geglvkie~T~g~Dd~~vrLDrSkI~svG~pal~~FL~rLqvykstgDve~G~~lye~y~tV~d~p~e~~ltlRDivl~r 359 (417)
T KOG3675|consen 280 GEGLVKIEPTTGSDDARVRLDRSKIDSVGRPALEDFLRRLQVYKSTGDVEGGSKLYEGYATVTDAPPECFLTLRDIVLLR 359 (417)
T ss_pred cCCeeEeeccCCCcceeeeecHhhhhhcccHhHHHHHHHHHhhcccccccccceeeeccccccCCCccchhhHHHHHHhh
Confidence 87 432 21 23589999999 99999999999999999999999999999999986 366 89999
Q ss_pred hhccCCCCcccccccccccccC
Q 004451 732 LENVQVPVDIAPTFTAVNKLLQ 753 (753)
Q Consensus 732 ~~~~~~p~~i~~~f~~~~~~~~ 753 (753)
.+ | |++|||+||+++
T Consensus 360 k~----~---rkliVQpNt~le 374 (417)
T KOG3675|consen 360 KE----S---RKLIVQPNTRLE 374 (417)
T ss_pred cc----c---hheEeccceeec
Confidence 88 8 889999999874
No 4
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.85 E-value=1.1e-20 Score=185.11 Aligned_cols=137 Identities=31% Similarity=0.493 Sum_probs=112.5
Q ss_pred cccc-ccCCceEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEE
Q 004451 2 SEVH-RVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFV 80 (753)
Q Consensus 2 ~~vh-~~g~~h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l 80 (753)
..+| .+|++|++|.++|++ ++|+|||+||+..+..+||.|++|+||+++.|| .+||+||++||||+++....+..+
T Consensus 17 ~~~~~~~g~~h~~v~v~v~~-~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~ 93 (158)
T TIGR02150 17 AEVHLQETPLHRAFSVFLFN-EEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVL 93 (158)
T ss_pred HHhhhcCCCeEEEEEEEEEc-CCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEc
Confidence 4678 479999999999999 789999999999888999999999899999999 499999999999999765555556
Q ss_pred EEEEeeeecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcCCCCcccCC
Q 004451 81 FTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYD 149 (753)
Q Consensus 81 ~~~~~~~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~~~~~~pw~ 149 (753)
+.+.+....+.+ .+.+.++|.+..+. .+.++++|+.++.|++++|+.+++..+++.++||.
T Consensus 94 ~~~~~~~~~~~g---~~~~~~~f~~~~~~-----~~~~~~~Ev~~~~W~~~~el~~~~~~~~~~~~p~~ 154 (158)
T TIGR02150 94 PRFSYRARDAWG---EHELCPVFFARAPV-----PLNPNPEEVAEYRWVSLEELKEILKAPWAGFSPWF 154 (158)
T ss_pred ceEEEEEecCCC---cEEEEEEEEEecCC-----cccCChhHeeeEEEeCHHHHHHHHhcCccccCHhh
Confidence 666554433333 35677888886543 23556679999999999999999999888999983
No 5
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.84 E-value=1.4e-20 Score=185.55 Aligned_cols=140 Identities=30% Similarity=0.474 Sum_probs=112.7
Q ss_pred ccccccCCc-eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEE
Q 004451 2 SEVHRVGDY-HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFV 80 (753)
Q Consensus 2 ~~vh~~g~~-h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l 80 (753)
+.+|.+|.. |++|.++|++ ++++|||+||+..+..+||.|++|+||++++|||+.+||+||++||||+.+....+. +
T Consensus 20 ~~~~~~~~~~~~~v~v~i~~-~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~-~ 97 (165)
T cd02885 20 LEAHLKGTLLHRAFSVFLFN-SKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELV-L 97 (165)
T ss_pred HHHhhcCCcceeEEEEEEEc-CCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhc-c
Confidence 568999998 9999999999 678999999998888899999998899999999999999999999999997654333 3
Q ss_pred EEEEeeeecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcCCCCcccCC
Q 004451 81 FTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYD 149 (753)
Q Consensus 81 ~~~~~~~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~~~~~~pw~ 149 (753)
..+.+...++.+ ...+.+.++|.+..... ..++++|+.+++|++++++.+++...++.++||.
T Consensus 98 ~~~~~~~~~~~~-~~~~~i~~~f~~~~~~~-----~~~~~~Ev~~~~w~~~~el~~~~~~~~~~~~~~~ 160 (165)
T cd02885 98 PRFRYRAPDDGG-LVEHEIDHVFFARADVT-----LIPNPDEVSEYRWVSLEDLKELVAAAPEAFTPWF 160 (165)
T ss_pred ceEEEEEEcCCC-ceeeEEEEEEEEEeCCC-----CCCCccceeEEEEECHHHHHHHHHhCchhcCHHH
Confidence 445444332222 23456777887765332 2346689999999999999999999889999993
No 6
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.84 E-value=4.7e-20 Score=191.49 Aligned_cols=139 Identities=29% Similarity=0.461 Sum_probs=111.8
Q ss_pred ccCCceEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCC-----------------HHHHHHHHHHHHH
Q 004451 6 RVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDS-----------------SLISAQRELQEEL 68 (753)
Q Consensus 6 ~~g~~h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs-----------------~~~AA~REl~EEt 68 (753)
.+|++|++++|+|+| ++|+||||||+..|..+||+|+++||||+..||+ +.+||+|||.|||
T Consensus 51 ~~gl~Hra~~v~i~n-~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EEl 129 (247)
T PLN02552 51 PRGLLHRAFSVFLFN-SKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHEL 129 (247)
T ss_pred CCCceEEEEEEEEEc-CCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHh
Confidence 489999999999999 7899999999999999999999999999988743 5789999999999
Q ss_pred CCccC---CCceEEEEEEEeeeec-----CCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHh-
Q 004451 69 GINLP---KDAFEFVFTFLQQNVI-----NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA- 139 (753)
Q Consensus 69 Gl~v~---~~~L~~l~~~~~~~~~-----~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~- 139 (753)
||++. ...+..++++.+..+. +++.+.++++.++|+...... .++.++++|+.+++|++++|+.+++.
T Consensus 130 GI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~---~~l~lq~eEV~~~~wvs~~el~~~~~~ 206 (247)
T PLN02552 130 GIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRD---VKVNPNPDEVADVKYVNREELKEMMRK 206 (247)
T ss_pred CCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCC---CcccCCHHHhheEEEEeHHHHHHHHhh
Confidence 99853 2346777777765542 224455688888876632222 23578889999999999999999886
Q ss_pred cCCCCcccC
Q 004451 140 KDDPSFVPY 148 (753)
Q Consensus 140 ~~~~~~~pw 148 (753)
..+..|+||
T Consensus 207 ~~~~~~tpw 215 (247)
T PLN02552 207 ESGLKLSPW 215 (247)
T ss_pred cCCcccCHH
Confidence 556778998
No 7
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=7.5e-20 Score=176.10 Aligned_cols=137 Identities=42% Similarity=0.705 Sum_probs=109.4
Q ss_pred ceEEEEEEEEecCC---CEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEee
Q 004451 10 YHRTVNAWIFAEST---QELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQ 86 (753)
Q Consensus 10 ~h~aV~v~V~~~~~---g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~ 86 (753)
+|++|.|+|++ .+ ++|||++|+..+..+||.|++|+||++++|||+.+||+||++||||+.+....+..++.+.+.
T Consensus 1 ~h~~v~~~v~~-~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~ 79 (144)
T cd04692 1 WHRTFHCWIIT-KDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIE 79 (144)
T ss_pred CceEEEEEEEE-ccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEe
Confidence 59999999999 55 799999999888889999999779999999999999999999999998755567777777654
Q ss_pred eecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcCCCCcccCCC
Q 004451 87 NVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYDV 150 (753)
Q Consensus 87 ~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~~~~~~pw~~ 150 (753)
... .+....+.+.++|.+...... ..+.++++|+.+++|++++++.+++...+..|+||+.
T Consensus 80 ~~~-~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~ 140 (144)
T cd04692 80 YDH-IGKLIDREFHHVYLYELKVPL--EEFTLQKEEVAGVVLIPLDEFAELLEEEDHKYQYYDG 140 (144)
T ss_pred ccc-cCCCccceEEEEEEEeccCCh--hhcCCChhHhheEEEECHHHHHHHHHcCCCCCCcccc
Confidence 321 111123456778888654311 2235667899999999999999999999999999964
No 8
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.83 E-value=1.2e-19 Score=181.44 Aligned_cols=142 Identities=20% Similarity=0.211 Sum_probs=110.0
Q ss_pred ccccccCCceEEEEEE--EEecCC--CEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCc-
Q 004451 2 SEVHRVGDYHRTVNAW--IFAEST--QELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDA- 76 (753)
Q Consensus 2 ~~vh~~g~~h~aV~v~--V~~~~~--g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~- 76 (753)
+.+|.+|++|++|.++ +.| ++ ++||++||+..|..+||+|+..|||+++.||++.+||+||++||||+++....
T Consensus 23 ~~~~~~g~~h~~v~~~~~~~~-~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~ 101 (180)
T cd03676 23 AASRLFGLVTYGVHLNGYVRD-EDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQ 101 (180)
T ss_pred cccccCCceEEEEEEEEEEEc-CCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhh
Confidence 6789999999999965 445 44 79999999999999999998666999999999999999999999999865422
Q ss_pred eEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcCCCCcccCCC
Q 004451 77 FEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYDV 150 (753)
Q Consensus 77 L~~l~~~~~~~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~~~~~~pw~~ 150 (753)
+..++.+.+.....++ ...+++.++|.+..+... .+.++++|+.++.|++++|+.+++. .+.|+||..
T Consensus 102 l~~~g~~~~~~~~~~~-~~~~e~~~~f~~~~~~~~---~~~~~~~Ev~~~~~~~~~el~~~l~--~g~~~~~~~ 169 (180)
T cd03676 102 LKPVGVVSYLREGEAG-GLQPEVEYVYDLELPPDF---IPAPQDGEVESFRLLTIDEVLRALK--EGEFKPNCA 169 (180)
T ss_pred ceeccEEEEEEEcCCC-cEeeeEEEEEEEEcCCCC---eeCCCCCcEeEEEEECHHHHHHHHH--cCCCCcccH
Confidence 5555555544321111 245678888887653222 2356778999999999999999998 457899854
No 9
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.81 E-value=3.2e-19 Score=179.06 Aligned_cols=140 Identities=24% Similarity=0.400 Sum_probs=110.4
Q ss_pred ccccc-cCCceEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEE
Q 004451 2 SEVHR-VGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFV 80 (753)
Q Consensus 2 ~~vh~-~g~~h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l 80 (753)
.++|. .|.+|++|.++|++ ++|+|||+||+..+..+||.|++|+||++++|||+.+||+||+.||||+++... ...+
T Consensus 24 ~~~~~~~~~~h~av~v~i~~-~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~-~~~~ 101 (184)
T PRK03759 24 AAAHTADTPLHLAFSCYLFD-ADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDL-ELVL 101 (184)
T ss_pred HHHHhcCCCeeeEEEEEEEc-CCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCcccc-cccc
Confidence 35784 78999999999999 788999999988888899999999999999999999999999999999986421 1123
Q ss_pred EEEEeeeecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcCCCCcccCC
Q 004451 81 FTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYD 149 (753)
Q Consensus 81 ~~~~~~~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~~~~~~pw~ 149 (753)
+.+.+....+++ ...+.+.++|.+...+ .+.++++|+.++.|++++++.+++.+++..++||.
T Consensus 102 ~~~~~~~~~~~~-~~~~~~~~vf~~~~~~-----~~~~~~~Ev~~~~W~~~~el~~~i~~~~~~~~~~l 164 (184)
T PRK03759 102 PDFRYRATDPNG-IVENEVCPVFAARVTS-----ALQPNPDEVMDYQWVDPADLLRAVDATPWAFSPWM 164 (184)
T ss_pred ceEEEEEecCCC-ceeeEEEEEEEEEECC-----CCCCChhHeeeEEEECHHHHHHHHHhCCcccChHH
Confidence 334433322233 1345677788887642 23566789999999999999999999988999993
No 10
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=99.77 E-value=6.3e-19 Score=168.75 Aligned_cols=139 Identities=29% Similarity=0.485 Sum_probs=121.4
Q ss_pred cccccC-C-ceEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCC-CceEE
Q 004451 3 EVHRVG-D-YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPK-DAFEF 79 (753)
Q Consensus 3 ~vh~~g-~-~h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~-~~L~~ 79 (753)
.+|... . +|++.+++||| ++|++||+||+..|..|||.|+++|+||.-+||+..+|++|.+.+|+||.+.. ..+..
T Consensus 23 ~~Ht~d~~~LHrAFS~~lFn-e~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~i 101 (185)
T COG1443 23 AAHTGDTPRLHRAFSSFLFN-ERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEI 101 (185)
T ss_pred hhhccccHHHHhhhheeEEC-CCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCcccc
Confidence 356643 4 59999999999 89999999999999999999999999999999999999999999999999642 45667
Q ss_pred EEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcCCCCcccC
Q 004451 80 VFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPY 148 (753)
Q Consensus 80 l~~~~~~~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~~~~~~pw 148 (753)
+..|.|..+++++ +.+++++.|+.++.... +.++++|+.+++|++++++.++..+.+..|+||
T Consensus 102 l~rf~YrA~~~~~-~~E~Eic~V~~~~~~~~-----~~~npdEV~~~~wv~~e~l~~~~~~~~~~fsPW 164 (185)
T COG1443 102 LPRFRYRAADPDG-IVENEICPVLAARLDSA-----LDPNPDEVMDYRWVSPEDLKEMVDATPWAFSPW 164 (185)
T ss_pred ccceEEeccCCCC-cceeeeeeEEEEeecCC-----CCCChHHhhheeccCHHHHHHhhcCCceeeChH
Confidence 7788888876665 67999999999987542 467889999999999999999998888888998
No 11
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=2.6e-17 Score=154.90 Aligned_cols=120 Identities=31% Similarity=0.486 Sum_probs=94.6
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCC
Q 004451 12 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 91 (753)
Q Consensus 12 ~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~ 91 (753)
++|.|++++ ++++|||++|+..+..+||+|++|+||++++||++.+||+||++||||+++. .+..++++.+...
T Consensus 1 ~~~~v~i~~-~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~--~l~~~~~~~~~~~--- 74 (126)
T cd04697 1 RATYIFVFN-SEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGV--QLTPLGLFYYDTD--- 74 (126)
T ss_pred CeEEEEEEc-CCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCcc--ccEEeeEEEecCC---
Confidence 478999999 7899999999888778899999966999999999999999999999999854 5677777765321
Q ss_pred CcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcCCCCccc
Q 004451 92 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVP 147 (753)
Q Consensus 92 g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~~~~~~p 147 (753)
..+...++|.+..... +.++++|+.++.|++++++.+++... .|.|
T Consensus 75 ---~~~~~~~~f~~~~~~~-----~~~~~~E~~~~~w~~~~el~~~~~~~--~~~~ 120 (126)
T cd04697 75 ---GNRVWGKVFSCVYDGP-----LKLQEEEVEEITWLSINEILQFKEGE--NITP 120 (126)
T ss_pred ---CceEEEEEEEEEECCC-----CCCCHhHhhheEEcCHHHHHHHhhcC--cccC
Confidence 1234556777765322 34566799999999999999987643 3444
No 12
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=2.6e-17 Score=154.73 Aligned_cols=122 Identities=37% Similarity=0.692 Sum_probs=91.9
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCC
Q 004451 12 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 91 (753)
Q Consensus 12 ~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~ 91 (753)
++|.+++++ ++|+|||+||+..+..+||.|++|+||+++.||++ +||+||++||||+++....+..++++.+.. +
T Consensus 1 ~~v~v~~~~-~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~--~- 75 (127)
T cd04693 1 LVVHVCIFN-SKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEA--E- 75 (127)
T ss_pred CeEEEEEEe-CCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeec--C-
Confidence 468888998 67899999998877788999999889999999999 999999999999997655566666554322 1
Q ss_pred CcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcCCCCcccC
Q 004451 92 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPY 148 (753)
Q Consensus 92 g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~~~~~~pw 148 (753)
+ +...++|.+... .....++++|+.+++|++++++.+++.. ..++||
T Consensus 76 ~----~~~~~~~~~~~~----~~~~~~~~~E~~~~~w~~~~el~~~~~~--~~~~~~ 122 (127)
T cd04693 76 G----FDDYYLFYADVE----IGKLILQKEEVDEVKFVSKDEIDGLIGH--GEFTPY 122 (127)
T ss_pred C----eEEEEEEEecCc----ccccccCHHHhhhEEEeCHHHHHHHHhc--CCcccc
Confidence 1 222334433221 1223556679999999999999999974 457776
No 13
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.72 E-value=8e-17 Score=161.12 Aligned_cols=124 Identities=29% Similarity=0.383 Sum_probs=95.8
Q ss_pred ccccccCCceEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEE
Q 004451 2 SEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVF 81 (753)
Q Consensus 2 ~~vh~~g~~h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~ 81 (753)
..+|.+|+.|+++.++|++ ++|+|||++|+..+..+||+|+.||||++++|||+.+||+|||+||||+.+. .+..++
T Consensus 28 ~~~~~~~~~h~~~~v~v~~-~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~--~~~~~~ 104 (180)
T PRK15393 28 EQMRAQCLRHRATYIVVHD-GMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGV--PFAEHG 104 (180)
T ss_pred HHHhhCCCceEEEEEEEEC-CCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCc--cceece
Confidence 3689999999999999999 7899999999887777899997655999999999999999999999999843 244455
Q ss_pred EEEeeeecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004451 82 TFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 139 (753)
Q Consensus 82 ~~~~~~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~ 139 (753)
.+.+.. . ..+...++|.+.... ...++++|+.+++|++++++++++.
T Consensus 105 ~~~~~~----~--~~~~~~~~f~~~~~~-----~~~~~~~E~~~~~W~~~~el~~~~~ 151 (180)
T PRK15393 105 QFYFED----E--NCRVWGALFSCVSHG-----PFALQEEEVSEVCWMTPEEITARCD 151 (180)
T ss_pred eEEecC----C--CceEEEEEEEEEeCC-----CCCCChHHeeEEEECCHHHHhhhhh
Confidence 543321 1 123445566664322 2355678999999999999998753
No 14
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.69 E-value=3.8e-16 Score=152.92 Aligned_cols=121 Identities=15% Similarity=0.228 Sum_probs=87.2
Q ss_pred CceEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEE--ee
Q 004451 9 DYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFL--QQ 86 (753)
Q Consensus 9 ~~h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~--~~ 86 (753)
..+.+|+++|++ ++++|||+||+. .+.+|.|++| ||+|+.|||+.+||+||++||||+++.......++.+. +.
T Consensus 15 ~~~~~v~~vI~~-~~g~VLL~kR~~--~~~~g~W~lP-GG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~ 90 (159)
T PRK15434 15 TPLISLDFIVEN-SRGEFLLGKRTN--RPAQGYWFVP-GGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYD 90 (159)
T ss_pred CceEEEEEEEEC-CCCEEEEEEccC--CCCCCcEECC-ceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecc
Confidence 456799999998 678999999975 3578999999 99999999999999999999999986432222333222 21
Q ss_pred eecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 87 NVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 87 ~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
..++...+..+.+..+|.+..... ...+.++|+.+++|++++++++.
T Consensus 91 ~~~~~~~~~~~~i~~~f~~~~~~g----~~~~~~~E~~~~~W~~~~el~~~ 137 (159)
T PRK15434 91 DNFSGTDFTTHYVVLGFRLRVAEE----DLLLPDEQHDDYRWLTPDALLAS 137 (159)
T ss_pred cccCCCccceEEEEEEEEEEecCC----cccCChHHeeEEEEEeHHHhhhc
Confidence 111111222356777787765432 23455679999999999999764
No 15
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.68 E-value=5.3e-16 Score=149.65 Aligned_cols=120 Identities=15% Similarity=0.205 Sum_probs=88.1
Q ss_pred ceEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeee-
Q 004451 10 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNV- 88 (753)
Q Consensus 10 ~h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~- 88 (753)
...+|+++|+| .+|+|||+||.. .+++|+|.+| ||+++.|||+.+||+||++||||+++....+..++.+.+...
T Consensus 11 p~v~v~~vI~~-~~g~vLl~~R~~--~p~~g~w~lP-GG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~ 86 (144)
T cd03430 11 PLVSIDLIVEN-EDGQYLLGKRTN--RPAQGYWFVP-GGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDD 86 (144)
T ss_pred CeEEEEEEEEe-CCCeEEEEEccC--CCCCCcEECC-CceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEecc
Confidence 35789999998 678999999965 3578999999 999999999999999999999999976553344444432211
Q ss_pred -cCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 89 -INDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 89 -~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
........+.+..+|.+...... +...++|+.+++|+++++++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 87 NFFGDDFSTHYVVLGYVLKLSSNE----LLLPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred ccccCCCccEEEEEEEEEEEcCCc----ccCCchhccEeEEecHHHHhcC
Confidence 11111233667777877654321 2445679999999999999764
No 16
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=1.2e-15 Score=142.86 Aligned_cols=115 Identities=19% Similarity=0.259 Sum_probs=86.1
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecC
Q 004451 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 90 (753)
Q Consensus 11 h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~ 90 (753)
+.+|+++|++ .+++|||++|+.. +.+|.|.+| ||++++|||+.+||+||++||||+++.. ...++.+.+....+
T Consensus 2 ~~~~~~~i~~-~~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt~~eaa~RE~~EEtGl~~~~--~~~~~~~~~~~~~~ 75 (125)
T cd04679 2 RVGCGAAILR-DDGKLLLVKRLRA--PEAGHWGIP-GGKVDWMEAVEDAVVREIEEETGLSIHS--TRLLCVVDHIIEEP 75 (125)
T ss_pred ceEEEEEEEC-CCCEEEEEEecCC--CCCCeEeCC-eeeccCCCCHHHHHHHHHHHHHCCCccc--ceEEEEEeecccCC
Confidence 6789999998 6789999999653 357999999 9999999999999999999999999754 34444444322211
Q ss_pred CCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHH
Q 004451 91 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLL 138 (753)
Q Consensus 91 ~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~ 138 (753)
..+.+.++|.+....... ...+++|+.+++|++++++++.+
T Consensus 76 ----~~~~~~~~f~~~~~~~~~---~~~~~~E~~~~~W~~~~~l~~~l 116 (125)
T cd04679 76 ----PQHWVAPVYLAENFSGEP---RLMEPDKLLELGWFALDALPQPL 116 (125)
T ss_pred ----CCeEEEEEEEEeecCCcc---ccCCCccccEEEEeCHHHCCchh
Confidence 236677788887643322 12345689999999999997644
No 17
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.66 E-value=1.2e-16 Score=155.61 Aligned_cols=147 Identities=33% Similarity=0.605 Sum_probs=124.3
Q ss_pred ccCCceEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCC--CCC-------CHHHHHHHHHHHHHCCcc---C
Q 004451 6 RVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHIS--AGD-------SSLISAQRELQEELGINL---P 73 (753)
Q Consensus 6 ~~g~~h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve--~gE-------s~~~AA~REl~EEtGl~v---~ 73 (753)
.+|.+||+.+||+|| +++++||+||+..|..|||.|+..|++|.- ++| .+..||+|-|.-|+||.. +
T Consensus 47 ~kglLHRaFSVFlFn-s~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~ 125 (225)
T KOG0142|consen 47 EKGLLHRAFSVFLFN-SKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVP 125 (225)
T ss_pred HhhhhhheeeEEEec-CcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccC
Confidence 678999999999999 899999999999999999999999999985 222 467899999999999984 4
Q ss_pred CCceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcCCCCcccCCCCCc
Q 004451 74 KDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYDVNGG 153 (753)
Q Consensus 74 ~~~L~~l~~~~~~~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~~~~~~pw~~~~~ 153 (753)
++.+..++.++|... ++|.|++|++.++.++.. +++ +.++++|+.+++|++.+|+.+++.+.+..|+||
T Consensus 126 pee~~~ltrihYkA~-sdg~wGEhEiDYiL~~~~--~~~---~nPnpnEv~e~ryvs~eelkel~~~~~~~~TPW----- 194 (225)
T KOG0142|consen 126 PEEFNFLTRIHYKAP-SDGIWGEHEIDYILFLVK--DVT---LNPNPNEVSEIRYVSREELKELVAKASAGFTPW----- 194 (225)
T ss_pred HHHcccceeeeeecC-CCCCcccceeeEEEEEec--cCC---CCCChhhhhHhheecHHHHHHHHhccccCCChH-----
Confidence 457899999999876 457799999998777654 333 467789999999999999999999888889999
Q ss_pred hhHHHHHHHHHhhhh
Q 004451 154 YGQLFNIISQRYKEN 168 (753)
Q Consensus 154 ~~~~f~~i~~~~~~~ 168 (753)
|+.|.++|.-.
T Consensus 195 ----fkli~~~~l~~ 205 (225)
T KOG0142|consen 195 ----FKLISENFLFK 205 (225)
T ss_pred ----HHHHHHHHHHH
Confidence 77777776543
No 18
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=2.2e-15 Score=139.83 Aligned_cols=115 Identities=23% Similarity=0.441 Sum_probs=83.7
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCC
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 92 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g 92 (753)
+|.++|++ +|+|||+||...+ ..+|.|++| ||++++|||+.+||+||++||||+.+....+..++.+.... ..
T Consensus 2 ~v~~vi~~--~~~vLL~~r~~~~-~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~--~~- 74 (120)
T cd04683 2 AVYVLLRR--DDEVLLQRRANTG-YMDGQWALP-AGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRT--ED- 74 (120)
T ss_pred cEEEEEEE--CCEEEEEEccCCC-CCCCeEeCC-ccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecC--CC-
Confidence 57788876 5899999997543 458999999 99999999999999999999999997644566666654322 11
Q ss_pred cccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004451 93 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 139 (753)
Q Consensus 93 ~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~ 139 (753)
..+.+.++|.+......+ ...+++|+.+++|+++++++..+.
T Consensus 75 --~~~~~~~~f~~~~~~~~~---~~~~~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 75 --IESRIGLFFTVRRWSGEP---RNCEPDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred --CceEEEEEEEEEeecCcc---ccCCCCcEeeEEEEchHHCcchhc
Confidence 124455556565432211 133457899999999999987665
No 19
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.64 E-value=1.5e-15 Score=145.60 Aligned_cols=121 Identities=23% Similarity=0.380 Sum_probs=79.5
Q ss_pred ceEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEe---e
Q 004451 10 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQ---Q 86 (753)
Q Consensus 10 ~h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~---~ 86 (753)
.++++.|.|++ .+++|||+||+..+..+||.|++| ||++++|||+.+||+||++||||+++....+... .+.. .
T Consensus 2 ~~r~~~~~ii~-~~~~vLl~~R~~~~~~~~g~W~lP-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~-~~~~~~~~ 78 (141)
T PRK15472 2 RQRTIVCPLIQ-NDGAYLLCKMADDRGVFPGQWALS-GGGVEPGERIEEALRREIREELGEQLLLTEITPW-TFRDDIRT 78 (141)
T ss_pred cceeEEEEEEe-cCCEEEEEEecccCCCCCCceeCC-cccCCCCCCHHHHHHHHHHHHHCCceeeeeeccc-ccccccee
Confidence 45788888887 578999999988777899999999 9999999999999999999999998643222111 1100 0
Q ss_pred eecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 87 NVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 87 ~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
..++++. ...+.++|++....... ..+.+ ++|+.+++|++++|++++
T Consensus 79 ~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~-~~E~~~~~w~~~~el~~l 125 (141)
T PRK15472 79 KTYADGR--KEEIYMIYLIFDCVSAN-RDVKI-NEEFQDYAWVKPEDLVHY 125 (141)
T ss_pred EEecCCC--ceeEEEEEEEEEeecCC-CcccC-ChhhheEEEccHHHhccc
Confidence 0112221 11223333221111111 11233 368999999999999765
No 20
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=1.6e-15 Score=141.59 Aligned_cols=113 Identities=27% Similarity=0.412 Sum_probs=84.3
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCC-CCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeec
Q 004451 11 HRTVNAWIFAESTQELLLQRRADF-KDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVI 89 (753)
Q Consensus 11 h~aV~v~V~~~~~g~VLL~kRs~~-k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~ 89 (753)
|.++.+++.+ +|+|||++|+.. +..++|.|++| ||+++.||++.+||+||+.||||+++....+.....+..
T Consensus 1 ~~v~~~~~~~--~g~vLl~~r~~~~~~~~~g~w~~P-gG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~---- 73 (122)
T cd04682 1 SGVALALLIG--DGRLLLQLRDDKPGIPYPGHWDLP-GGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPS---- 73 (122)
T ss_pred CceEEEEEEc--CCEEEEEEccCCCCCCCCCcEeCC-CccccCCCCHHHHHHHHHHHHhCCcccccccceeEeccc----
Confidence 4566666666 489999999876 56799999999 999999999999999999999999975433433333322
Q ss_pred CCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 90 NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 90 ~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
. ......++|.+...... ....+++|+.+++|++++|+.+.
T Consensus 74 ~----~~~~~~~~f~~~~~~~~---~~~~~~~E~~~~~W~~~~el~~~ 114 (122)
T cd04682 74 A----SPPGTEHVFVVPLTARE---DAILFGDEGQALRLMTVEEFLAH 114 (122)
T ss_pred C----CCCceEEEEEEEEecCC---CccccCchhheeecccHHHHhhc
Confidence 1 12346678888765432 12456689999999999999664
No 21
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=3.2e-15 Score=140.65 Aligned_cols=122 Identities=19% Similarity=0.308 Sum_probs=88.9
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecC
Q 004451 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 90 (753)
Q Consensus 11 h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~ 90 (753)
+.+|+++|++ ++++|||++|... +++|.|.+| ||+++.|||+.+||.||++||||+++.. +..++.+....+..
T Consensus 2 ~~~v~~ii~~-~~~~iLl~~r~~~--~~~~~w~~P-GG~ve~gEt~~~Aa~REl~EE~Gl~~~~--~~~~~~~~~~~~~~ 75 (129)
T cd04678 2 RVGVGVFVLN-PKGKVLLGKRKGS--HGAGTWALP-GGHLEFGESFEECAAREVLEETGLHIEN--VQFLTVTNDVFEEE 75 (129)
T ss_pred ceEEEEEEEC-CCCeEEEEeccCC--CCCCeEECC-cccccCCCCHHHHHHHHHHHHhCCcccc--eEEEEEEeEEeCCC
Confidence 5789999999 6789999999753 468999999 9999999999999999999999999643 45555444322111
Q ss_pred CCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcCCCCccc
Q 004451 91 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVP 147 (753)
Q Consensus 91 ~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~~~~~~p 147 (753)
..+.+..+|.+......... ...+++|+.+++|++++++.++ +..|+|
T Consensus 76 ----~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~~l~~~----~~~~~~ 123 (129)
T cd04678 76 ----GKHYVTIFVKAEVDDGEAEP-NKMEPEKCEGWEWFDWEELPSV----DPLFLP 123 (129)
T ss_pred ----CcEEEEEEEEEEeCCCCccc-CCCCCceeCceEEeCHHHCCCc----chhhHH
Confidence 23567777777664432210 1125678889999999999875 445555
No 22
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.62 E-value=6.9e-15 Score=137.47 Aligned_cols=116 Identities=18% Similarity=0.216 Sum_probs=85.0
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCC
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 92 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g 92 (753)
+|.++|++ +++|||++|+..+ ++|.|.+| ||+++.||++.+||+||++||||+++.. +..++.+.+....+.+
T Consensus 2 ~~~~ii~~--~~~vLl~~~~~~~--~~~~w~lP-gG~ve~gE~~~~aa~RE~~EEtGl~~~~--~~~~~~~~~~~~~~~~ 74 (128)
T cd04684 2 GAYAVIPR--DGKLLLIQKNGGP--YEGRWDLP-GGGIEPGESPEEALHREVLEETGLTVEI--GRRLGSASRYFYSPDG 74 (128)
T ss_pred eeEEEEEe--CCEEEEEEccCCC--CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCcEeec--ceeeeEEEEEEECCCC
Confidence 57778887 4899999997643 78999999 9999999999999999999999998644 4555555443332222
Q ss_pred cccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 93 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 93 ~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
....+.+.++|.+........ .....+|+.+++|++++++...
T Consensus 75 ~~~~~~~~~~f~~~~~~~~~~--~~~~~~e~~~~~W~~~~~l~~~ 117 (128)
T cd04684 75 DYDAHHLCVFYDARVVGGALP--VQEPGEDSHGAAWLPLDEAIER 117 (128)
T ss_pred CeeccEEEEEEEEEEecCccc--cCCCCCCceeeEEECHHHhhcc
Confidence 112366788888876544321 1334468889999999999754
No 23
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.62 E-value=3.3e-15 Score=140.17 Aligned_cols=123 Identities=27% Similarity=0.467 Sum_probs=91.4
Q ss_pred ceEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeec
Q 004451 10 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVI 89 (753)
Q Consensus 10 ~h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~ 89 (753)
+|++|+++|++ .+++|||+||+..+...+|.|.+| ||++++|||+.+||+||+.||||+++.. ...+..+.+....
T Consensus 1 ~~~~v~~ii~~-~~~~vLl~~r~~~~~~~~~~~~~p-gG~i~~~E~~~~aa~REl~EE~g~~~~~--~~~~~~~~~~~~~ 76 (134)
T PF00293_consen 1 WRRAVGVIIFN-EDGKVLLIKRSRSPITFPGYWELP-GGGIEPGESPEEAARRELKEETGLDVSP--LELLGLFSYPSPS 76 (134)
T ss_dssp EEEEEEEEEEE-TTTEEEEEEESTTSSSSTTEEESS-EEEECTTSHHHHHHHHHHHHHHSEEEEE--EEEEEEEEEEETT
T ss_pred CCCEEEEEEEe-CCcEEEEEEecCCCCCCCCeEecc-eeeEEcCCchhhhHHhhhhhcccceecc--cccceeeeecccC
Confidence 48999999999 677999999988665678999998 9999999999999999999999999643 3334444433321
Q ss_pred CCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcC
Q 004451 90 NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 141 (753)
Q Consensus 90 ~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~ 141 (753)
.. ..+...++|.+....... ....+..|+.++.|++++++.++...+
T Consensus 77 ~~---~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~W~~~~el~~~~~~~ 123 (134)
T PF00293_consen 77 GD---PEGEIVIFFIAELPSEQS--EIQPQDEEISEVKWVPPDELLELLLNG 123 (134)
T ss_dssp TE---SSEEEEEEEEEEEEEEES--ECHTTTTTEEEEEEEEHHHHHHHHHTT
T ss_pred CC---cccEEEEEEEEEEeCCcc--ccCCCCccEEEEEEEEHHHhhhchhCc
Confidence 11 123556667766543321 224444599999999999999987643
No 24
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.61 E-value=1e-14 Score=140.91 Aligned_cols=122 Identities=20% Similarity=0.326 Sum_probs=83.4
Q ss_pred ceEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEE----Ee
Q 004451 10 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTF----LQ 85 (753)
Q Consensus 10 ~h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~----~~ 85 (753)
++.+|.++|++ .+++|||+||+..+ |.|++| ||++++||++.+||+||++||||+++.. +..++.+ .|
T Consensus 2 ~~~~v~~ii~~-~~~~vLL~~r~~~~----~~W~~P-gG~~e~gE~~~~aA~REv~EEtGl~~~~--~~~l~~~~~~~~y 73 (147)
T cd03671 2 YRPNVGVVLFN-EDGKVFVGRRIDTP----GAWQFP-QGGIDEGEDPEQAALRELEEETGLDPDS--VEIIAEIPDWLRY 73 (147)
T ss_pred CCceEEEEEEe-CCCEEEEEEEcCCC----CCEECC-cCCCCCCcCHHHHHHHHHHHHHCCCcCc--eEEEEEcCCeeEe
Confidence 46789999998 67899999997643 899999 9999999999999999999999999643 3333332 12
Q ss_pred eeec--CCCcc---cceEEEEEEEEEEeCCCCCcCccC-CccceeeEEEeCHHHHHhHHh
Q 004451 86 QNVI--NDGKF---INNEFADVYLVTTLNPIPLEAFTL-QQTEVSAVKYIAYEEYKNLLA 139 (753)
Q Consensus 86 ~~~~--~~g~~---~~~~i~~vy~a~~~~~~~~~~~~~-~~~Ev~e~~Wvs~~El~~l~~ 139 (753)
.... ..+.+ ......++|.+..........+.. +++|+.+++|++++++++++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~ 133 (147)
T cd03671 74 DLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIV 133 (147)
T ss_pred eChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhch
Confidence 1110 00001 113345666666543211111223 246999999999999988764
No 25
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=1e-14 Score=135.36 Aligned_cols=113 Identities=21% Similarity=0.297 Sum_probs=81.9
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCC
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 92 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g 92 (753)
+|.++|++ +++|||++|.. .+++|.|.+| ||++++|||+.+||.||++||||+++.. +..++.+.+....+.+
T Consensus 2 ~v~~ii~~--~~~vLl~~r~~--~~~~~~w~~P-gG~ie~gE~~~~aa~RE~~EEtGl~~~~--~~~~~~~~~~~~~~~~ 74 (122)
T cd04673 2 AVGAVVFR--GGRVLLVRRAN--PPDAGLWSFP-GGKVELGETLEQAALRELLEETGLEAEV--GRLLTVVDVIERDAAG 74 (122)
T ss_pred cEEEEEEE--CCEEEEEEEcC--CCCCCeEECC-CcccCCCCCHHHHHHHHHHHhhCcEeee--ceeEEEEEEeeccCCC
Confidence 57778887 47999999965 3468999999 9999999999999999999999999643 3445554443322222
Q ss_pred cccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 93 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 93 ~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
....+.+.++|.+...... ...++|+.+++|++++++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~-----~~~~~E~~~~~w~~~~el~~~ 114 (122)
T cd04673 75 RVEFHYVLIDFLCRYLGGE-----PVAGDDALDARWVPLDELAAL 114 (122)
T ss_pred ccceEEEEEEEEEEeCCCc-----ccCCcccceeEEECHHHHhhC
Confidence 2223556677777653321 134468899999999999764
No 26
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=9.9e-15 Score=135.58 Aligned_cols=109 Identities=26% Similarity=0.425 Sum_probs=80.0
Q ss_pred EEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCCc
Q 004451 14 VNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGK 93 (753)
Q Consensus 14 V~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g~ 93 (753)
|.++|++ +++|||+||+..+.+++|.|++| ||++++|||+.+||+||++||||+++ ..+..+..+.... +
T Consensus 3 v~~vi~~--~~~vLL~rR~~~~~~~~g~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~--~~~~~l~~~~~~~----~- 72 (117)
T cd04691 3 VVGVLFS--DDKVLLERRSLTKNADPGKLNIP-GGHIEAGESQEEALLREVQEELGVDP--LSYTYLCSLYHPT----S- 72 (117)
T ss_pred EEEEEEE--CCEEEEEEeCCCCCCCCCeEECc-ceeecCCCCHHHHHHHHHHHHHCCCc--ccceEEEEEeccC----C-
Confidence 3344555 48999999987666789999999 99999999999999999999999984 3355666554321 1
Q ss_pred ccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhc
Q 004451 94 FINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAK 140 (753)
Q Consensus 94 ~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~ 140 (753)
.....++|.+...... +..+|+.++.|+++++++.+..+
T Consensus 73 --~~~~~~~~~~~~~~~~------~~~~E~~~~~W~~~~~l~~~~~~ 111 (117)
T cd04691 73 --ELQLLHYYVVTFWQGE------IPAQEAAEVHWMTANDIVLASEA 111 (117)
T ss_pred --CeEEEEEEEEEEecCC------CCcccccccEEcCHHHcchhhhh
Confidence 1344566666543321 23378999999999999876553
No 27
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=7.3e-15 Score=138.32 Aligned_cols=111 Identities=19% Similarity=0.354 Sum_probs=81.3
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCC
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 92 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g 92 (753)
+|.++|++ ++++|||++|... +++|.|++| ||+++.|||+.+||.||++||||+++. .+..++++.......+
T Consensus 3 av~~~i~~-~~~~vLL~~r~~~--~~~~~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl~~~--~~~~~~~~~~~~~~~~- 75 (130)
T cd04681 3 AVGVLILN-EDGELLVVRRARE--PGKGTLDLP-GGFVDPGESAEEALIREIREETGLKVT--ELSYLFSLPNTYPYGG- 75 (130)
T ss_pred eEEEEEEc-CCCcEEEEEecCC--CCCCcEeCC-ceeecCCCCHHHHHHHHHHHHhCCccc--ceeEEEeecceeeeCC-
Confidence 68889998 6789999999764 368999999 999999999999999999999999854 3556665543222111
Q ss_pred cccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHH
Q 004451 93 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYK 135 (753)
Q Consensus 93 ~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~ 135 (753)
...+.+.+.|.+...... ...+.+|+.+++|+++++++
T Consensus 76 -~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 76 -MEYDTLDLFFVCQVDDKP----IVKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred -ceeEEEEEEEEEEeCCCC----CcCChHHhheeEEecHHHCC
Confidence 123444455666553321 24455799999999999984
No 28
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=1.5e-14 Score=139.34 Aligned_cols=126 Identities=24% Similarity=0.337 Sum_probs=85.8
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCc--eEEEEEEE--eee
Q 004451 12 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDA--FEFVFTFL--QQN 87 (753)
Q Consensus 12 ~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~--L~~l~~~~--~~~ 87 (753)
.+|.++|++ .+++|||+||+..+..++|+|++| ||++++||++.+||+||+.||||+.+.... +..++.+. +..
T Consensus 2 ~~v~viv~~-~~~~vLl~rr~~~~~~~~g~w~~P-gG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~ 79 (143)
T cd04694 2 VGVAVLLQS-SDQKLLLTRRASSLRIFPNVWVPP-GGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPP 79 (143)
T ss_pred cEEEEEEEc-CCCEEEEEEECCCCCCCCCeEECc-ccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecccccc
Confidence 468888898 688999999988777899999999 999999999999999999999999865321 23444432 222
Q ss_pred ecCCCcccceEEEEEEEEEEeCCC---CCcCccCCccceeeEEEeCHHHHHhHHhc
Q 004451 88 VINDGKFINNEFADVYLVTTLNPI---PLEAFTLQQTEVSAVKYIAYEEYKNLLAK 140 (753)
Q Consensus 88 ~~~~g~~~~~~i~~vy~a~~~~~~---~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~ 140 (753)
..+.+....+ ...+|++...... ....+.++++|+.+++|++++++.+++..
T Consensus 80 ~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~~ 134 (143)
T cd04694 80 LLSRGLPKRH-HIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVSA 134 (143)
T ss_pred ccCCCcccce-eEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHHh
Confidence 1122111112 2233333222111 01123466689999999999999988753
No 29
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=1.1e-14 Score=136.48 Aligned_cols=112 Identities=23% Similarity=0.375 Sum_probs=79.9
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCC
Q 004451 12 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 91 (753)
Q Consensus 12 ~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~ 91 (753)
.+|+++|++ ++++|||+||.. ++|.|.+| ||+++.|||+.+||+||++||||+++....+..+..+.+.... .
T Consensus 3 ~~v~~~i~~-~~~~iLL~r~~~----~~~~w~lP-GG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~-~ 75 (125)
T cd04696 3 VTVGALIYA-PDGRILLVRTTK----WRGLWGVP-GGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEF-H 75 (125)
T ss_pred cEEEEEEEC-CCCCEEEEEccC----CCCcEeCC-ceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCC-C
Confidence 578899998 678999998742 57999999 9999999999999999999999998755443333222221111 1
Q ss_pred CcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 92 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 92 g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
. ..+.+..+|++..... .+.. .+|+.+++|++++++.++
T Consensus 76 ~--~~~~~~~~~~~~~~~~----~~~~-~~e~~~~~W~~~~el~~~ 114 (125)
T cd04696 76 K--PAHFVLFDFFARTDGT----EVTP-NEEIVEWEWVTPEEALDY 114 (125)
T ss_pred C--ccEEEEEEEEEEecCC----cccC-CcccceeEEECHHHHhcC
Confidence 1 2355666777765332 1233 368899999999999764
No 30
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.59 E-value=2.2e-14 Score=137.98 Aligned_cols=119 Identities=24% Similarity=0.346 Sum_probs=87.6
Q ss_pred CceEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeee
Q 004451 9 DYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNV 88 (753)
Q Consensus 9 ~~h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~ 88 (753)
..-++|+++|++ .+++|||++|... +.+|.|++| ||++++|||+.+||+||++||||+++.. +..++.+....
T Consensus 11 ~~~~av~~vv~~-~~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt~~~aa~REl~EEtGl~~~~--~~~~~~~~~~~- 83 (142)
T cd04700 11 VEARAAGAVILN-ERNDVLLVQEKGG--PKKGLWHIP-SGAVEDGEFPQDAAVREACEETGLRVRP--VKFLGTYLGRF- 83 (142)
T ss_pred eeeeeEEEEEEe-CCCcEEEEEEcCC--CCCCeEECC-ceecCCCCCHHHHHHHHHHHhhCceeec--cEEEEEEEEEc-
Confidence 456889999998 6789999887543 357999999 9999999999999999999999999643 45565554322
Q ss_pred cCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcC
Q 004451 89 INDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 141 (753)
Q Consensus 89 ~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~ 141 (753)
+++ ...+.++|++....... ... ..+|+.+++|++++++.+++.++
T Consensus 84 -~~~---~~~~~~~f~~~~~~~~~--~~~-~~~E~~~~~w~~~~el~~~~~~g 129 (142)
T cd04700 84 -DDG---VLVLRHVWLAEPEGQTL--APK-FTDEIAEASFFSREDVAQLYAQG 129 (142)
T ss_pred -CCC---cEEEEEEEEEEecCCcc--ccC-CCCCEEEEEEECHHHhhhccccc
Confidence 222 23456778887532211 112 23699999999999999988654
No 31
>PLN02325 nudix hydrolase
Probab=99.59 E-value=1.9e-14 Score=138.88 Aligned_cols=119 Identities=17% Similarity=0.221 Sum_probs=83.5
Q ss_pred ceEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeec
Q 004451 10 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVI 89 (753)
Q Consensus 10 ~h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~ 89 (753)
...+|.++|++ +++|||+||+.. +..|.|.+| ||+++.|||+.+||+||++||||+++.. +..++.+.+..+.
T Consensus 8 p~~~v~~vi~~--~~~vLL~rr~~~--~~~g~W~lP-GG~ve~gEs~~~aa~REv~EEtGl~v~~--~~~l~~~~~~~~~ 80 (144)
T PLN02325 8 PRVAVVVFLLK--GNSVLLGRRRSS--IGDSTFALP-GGHLEFGESFEECAAREVKEETGLEIEK--IELLTVTNNVFLE 80 (144)
T ss_pred CeEEEEEEEEc--CCEEEEEEecCC--CCCCeEECC-ceeCCCCCCHHHHHHHHHHHHHCCCCcc--eEEEEEecceeec
Confidence 46778888887 579999999753 356899999 9999999999999999999999999754 4455554433222
Q ss_pred CCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHH
Q 004451 90 NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLL 138 (753)
Q Consensus 90 ~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~ 138 (753)
... ..+.+..+|.+....... .....+++|+.+++|+++++|++.+
T Consensus 81 ~~~--~~~~i~~~f~~~~~~~~~-~~~~~e~~e~~~~~W~~~d~Lp~~~ 126 (144)
T PLN02325 81 EPK--PSHYVTVFMRAVLADPSQ-VPQNLEPEKCYGWDWYEWDNLPEPL 126 (144)
T ss_pred CCC--CcEEEEEEEEEEECCCCC-CCCcCCchhcCceEEEChHHCChhh
Confidence 221 235566666665432211 1123345677889999999998644
No 32
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.59 E-value=2.1e-14 Score=136.58 Aligned_cols=118 Identities=24% Similarity=0.299 Sum_probs=89.6
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecC
Q 004451 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 90 (753)
Q Consensus 11 h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~ 90 (753)
|.+|.+++++ +++++||++|...+ ..++.|.+| ||+++.||++.+||+||++||||+++. .+..++.+.+.
T Consensus 2 ~~~v~v~~~~-~~~~iLl~~~~~~~-~~~~~w~~P-gG~ve~gEs~~~aa~RE~~EE~Gl~~~--~~~~~~~~~~~---- 72 (137)
T cd03424 2 PDAVAVLPYD-DDGKVVLVRQYRPP-VGGWLLELP-AGLIDPGEDPEEAARRELEEETGYEAG--DLEKLGSFYPS---- 72 (137)
T ss_pred CCEEEEEEEc-CCCeEEEEEeeecC-CCCEEEEeC-CccCCCCCCHHHHHHHHHHHHHCCCcc--ceEEEeeEecC----
Confidence 6789999999 67899998775433 357899999 999999999999999999999999964 46666665432
Q ss_pred CCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcC
Q 004451 91 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 141 (753)
Q Consensus 91 ~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~ 141 (753)
.+ ..+...++|++....... ....++.|+.+++|++++|+.+++..+
T Consensus 73 ~~--~~~~~~~~~~~~~~~~~~--~~~~~~~E~~~~~w~~~~el~~~~~~~ 119 (137)
T cd03424 73 PG--FSDERIHLFLAEDLSPGE--EGLLDEGEDIEVVLVPLDEALELLADG 119 (137)
T ss_pred Cc--ccCccEEEEEEEcccccc--cCCCCCCCeeEEEEecHHHHHHHHHcC
Confidence 11 123356678776644321 134566799999999999999999865
No 33
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.59 E-value=1.1e-14 Score=142.48 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=85.4
Q ss_pred eEEEEEEEEecC-CCEEEEEEeCCCCCCCCCCeeecccccCCCC-CCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeee
Q 004451 11 HRTVNAWIFAES-TQELLLQRRADFKDSWPGMWDISSAGHISAG-DSSLISAQRELQEELGINLPKDAFEFVFTFLQQNV 88 (753)
Q Consensus 11 h~aV~v~V~~~~-~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~g-Es~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~ 88 (753)
|.+|.+++++.+ +++|||+||+..+..++|.|++| ||++++| |++.+||+||++||||+++. .+..++.+.....
T Consensus 2 ~~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lP-GG~ve~gdEs~~eaa~REl~EEtGl~~~--~~~~l~~~~~~~~ 78 (157)
T cd03426 2 RAAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFP-GGKVDPGDEDPVATALREAEEEIGLPPD--SVEVLGRLPPYYT 78 (157)
T ss_pred ceEEEEEEEeCCCceEEEEEEcccccccCCCcEECC-CCCcCCCcCCHHHHHHHHHHHHhCCCcc--ceEEEEECCCccc
Confidence 568888888733 25999999988776789999999 9999999 99999999999999999964 3555655432111
Q ss_pred cCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 89 INDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 89 ~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
.. ....+.|++..... ..+.++++|+.++.|++++++.+.
T Consensus 79 ~~------~~~v~~~~~~~~~~---~~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 79 RS------GFVVTPVVGLVPPP---LPLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred cC------CCEEEEEEEEECCC---CCCCCCHHHhheeEEEcHHHHhCc
Confidence 11 22345566654332 124566779999999999999764
No 34
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.58 E-value=2.5e-14 Score=138.18 Aligned_cols=117 Identities=20% Similarity=0.320 Sum_probs=82.2
Q ss_pred ceEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEE-----EEE
Q 004451 10 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVF-----TFL 84 (753)
Q Consensus 10 ~h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~-----~~~ 84 (753)
.+.+|.++|++ .+|+|||+||.. .+|.|++| ||+++.|||+.+||+||++||||+++....+..+. .+.
T Consensus 6 ~~~~v~~vi~~-~~~~vLl~~r~~----~~~~W~lP-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 79 (148)
T PRK09438 6 RPVSVLVVIYT-PDLGVLMLQRAD----DPDFWQSV-TGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYE 79 (148)
T ss_pred CceEEEEEEEe-CCCeEEEEEecC----CCCcEeCC-cccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccc
Confidence 36788999998 678999998854 36899998 99999999999999999999999986323332221 110
Q ss_pred e----eeecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004451 85 Q----QNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 139 (753)
Q Consensus 85 ~----~~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~ 139 (753)
. ..+.+.+ ..+...++|.+...... .+..+|+.+++|++++++.++..
T Consensus 80 ~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~-----~~~~~E~~~~~W~~~~e~~~~~~ 131 (148)
T PRK09438 80 IFPHWRHRYAPG--VTRNTEHWFCLALPHER-----PVVLTEHLAYQWLDAREAAALTK 131 (148)
T ss_pred cchhhhhccccc--cCCceeEEEEEecCCCC-----ccccCcccceeeCCHHHHHHHhc
Confidence 0 0011112 23566788888653321 22335999999999999988754
No 35
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=3.6e-14 Score=133.56 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=81.5
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCC
Q 004451 12 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 91 (753)
Q Consensus 12 ~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~ 91 (753)
.++.++|++ +++|||+||... .++.|.+| ||+++.|||+.+||+||+.||||+.+....+..+..+........
T Consensus 2 ~~a~~iv~~--~~~vLl~~r~~~---~~~~~~lP-GG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~ 75 (128)
T cd04687 2 NSAKAVIIK--NDKILLIKHHDD---GGVWYILP-GGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSE 75 (128)
T ss_pred cEEEEEEEE--CCEEEEEEEEcC---CCCeEECC-CcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCcccc
Confidence 467777776 589999998542 35789999 999999999999999999999999976655555544432110001
Q ss_pred CcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 92 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 92 g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
.....+.+.++|.+..............+.+..+++|+++++++++
T Consensus 76 ~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~ 121 (128)
T cd04687 76 LPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDI 121 (128)
T ss_pred CCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcc
Confidence 1112467778888876543211101112235568999999999764
No 36
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.58 E-value=1.7e-14 Score=135.83 Aligned_cols=115 Identities=23% Similarity=0.274 Sum_probs=82.8
Q ss_pred EEEEEEEEecC--CCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEe--ee
Q 004451 12 RTVNAWIFAES--TQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQ--QN 87 (753)
Q Consensus 12 ~aV~v~V~~~~--~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~--~~ 87 (753)
+.|.+++++ . +++|||+||+.. ++|.|.+| ||+++.|||+.+||.||++||||+.+.. +..+..... ..
T Consensus 2 ~~~~v~~~~-~~~~~~vLL~~r~~~---~~~~w~~P-gG~ve~~Es~~~aa~RE~~EE~Gl~~~~--~~~~~~~~~~~~~ 74 (129)
T cd04664 2 RSVLVVPYR-LTGEGRVLLLRRSDK---YAGFWQSV-TGGIEDGESPAEAARREVAEETGLDPER--LTLLDRGASIAFV 74 (129)
T ss_pred cEEEEEEEE-eCCCCEEEEEEeCCC---CCCccccc-CcccCCCCCHHHHHHHHHHHHHCCChhh--eEEEeeccccccc
Confidence 578888888 6 789999999763 78999998 9999999999999999999999998643 233332221 00
Q ss_pred ecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004451 88 VINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 139 (753)
Q Consensus 88 ~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~ 139 (753)
..... ..+...++|++.+.... ....++|+.++.|++++++.+++.
T Consensus 75 ~~~~~--~~~~~~~~f~~~~~~~~----~~~~~~E~~~~~W~~~~e~~~~~~ 120 (129)
T cd04664 75 EFTDN--GRVWTEHPFAFHLPSDA----VVTLDWEHDAFEWVPPEEAAALLL 120 (129)
T ss_pred ccCCC--ceEEEEeEEEEEcCCCC----cccCCccccccEecCHHHHHHHHc
Confidence 11111 13456678888754322 123456899999999999988764
No 37
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.57 E-value=2.9e-14 Score=136.36 Aligned_cols=117 Identities=24% Similarity=0.250 Sum_probs=78.8
Q ss_pred eEEEEEEEEecCC-CEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEE---EEEEee
Q 004451 11 HRTVNAWIFAEST-QELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFV---FTFLQQ 86 (753)
Q Consensus 11 h~aV~v~V~~~~~-g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l---~~~~~~ 86 (753)
|.+++++|++ ++ ++|||+||+. .|.|.+| ||++++||++.+||.||++||||+++.......+ ..+...
T Consensus 2 ~~~~~~~v~~-~~~~~vLLv~r~~-----~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 74 (138)
T cd03674 2 HFTASAFVVN-PDRGKVLLTHHRK-----LGSWLQP-GGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPI 74 (138)
T ss_pred cEEEEEEEEe-CCCCeEEEEEEcC-----CCcEECC-ceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEee
Confidence 8999999999 55 8999998854 4889998 9999999999999999999999998643222111 011110
Q ss_pred eecCCC-cccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 87 NVINDG-KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 87 ~~~~~g-~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
...+.. ....+.+..+|++....... ...+++|+.+++|++++++..+
T Consensus 75 ~~~~~~~~~~~~~~~~~y~~~~~~~~~---~~~~~~E~~~~~W~~~~el~~~ 123 (138)
T cd03674 75 DGHPKRGVPGHLHLDLRFLAVAPADDV---APPKSDESDAVRWFPLDELASL 123 (138)
T ss_pred cCCCCCCCCCcEEEEEEEEEEccCccc---cCCCCCcccccEEEcHHHhhhc
Confidence 000110 00123355678886543221 1135679999999999999653
No 38
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.57 E-value=1.8e-14 Score=139.14 Aligned_cols=114 Identities=21% Similarity=0.357 Sum_probs=86.4
Q ss_pred ceEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeec
Q 004451 10 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVI 89 (753)
Q Consensus 10 ~h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~ 89 (753)
...+|++++.. +++|||+||.. .++.|+|++| ||+|+.|||+++||.||++||||+++. .++.++.+....++
T Consensus 9 p~~~v~~~i~~--~~~iLLvrR~~--~p~~g~WalP-GG~ve~GEt~eeaa~REl~EETgL~~~--~~~~~~v~~~~~rd 81 (145)
T COG1051 9 PLVAVGALIVR--NGRILLVRRAN--EPGAGYWALP-GGFVEIGETLEEAARRELKEETGLRVR--VLELLAVFDDPGRD 81 (145)
T ss_pred cceeeeEEEEe--CCEEEEEEecC--CCCCCcEeCC-CccCCCCCCHHHHHHHHHHHHhCCccc--ceeEEEEecCCCCC
Confidence 46788888876 56999999976 5578999999 999999999999999999999999953 46777777765554
Q ss_pred CCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 90 NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 90 ~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
+. .|.++++|++....... ...+.++...+.|+++++++.+
T Consensus 82 ~r----~~~v~~~~~~~~~~g~~---~~~~~~d~~~~~~~~~~~l~~~ 122 (145)
T COG1051 82 PR----GHHVSFLFFAAEPEGEL---LAGDGDDAAEVGWFPLDELPEL 122 (145)
T ss_pred Cc----eeEEEEEEEEEecCCCc---ccCChhhHhhcceecHhHcccc
Confidence 32 36677777776532211 1222347788999999999754
No 39
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.56 E-value=4.5e-14 Score=132.48 Aligned_cols=114 Identities=23% Similarity=0.289 Sum_probs=81.8
Q ss_pred EEEEEEEEecCC--CEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeec
Q 004451 12 RTVNAWIFAEST--QELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVI 89 (753)
Q Consensus 12 ~aV~v~V~~~~~--g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~ 89 (753)
.++++++++..+ ++|||++|... |.|.+| ||++++|||+.+||.||++||||+.+.. +..++.+.+....
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~~-----~~w~~P-gG~v~~gEs~~~aa~REl~EEtGl~~~~--~~~~~~~~~~~~~ 73 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPRG-----DDWSLP-KGKLEPGETPPEAAVREVEEETGIRAEV--GDPLGTIRYWFSS 73 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCCC-----CcccCC-CCccCCCCCHHHHHHHHHhhhhCCceEe--cceEEEEEEeccC
Confidence 467888888322 79999998542 799999 9999999999999999999999998643 4455655543322
Q ss_pred CCCcccceEEEEEEEEEEeCCCCCcCccC-CccceeeEEEeCHHHHHhHHh
Q 004451 90 NDGKFINNEFADVYLVTTLNPIPLEAFTL-QQTEVSAVKYIAYEEYKNLLA 139 (753)
Q Consensus 90 ~~g~~~~~~i~~vy~a~~~~~~~~~~~~~-~~~Ev~e~~Wvs~~El~~l~~ 139 (753)
+.+ ..+...++|.+...... ... ++.|+.++.|++++++.+++.
T Consensus 74 ~~~--~~~~~~~~~~~~~~~~~----~~~~~~~E~~~~~W~~~~el~~~~~ 118 (131)
T cd03673 74 SGK--RVHKTVHWWLMRALGGE----FTPQPDEEVDEVRWLPPDEARDRLS 118 (131)
T ss_pred CCC--CcceEEEEEEEEEcCCC----cccCCCCcEEEEEEcCHHHHHHHcC
Confidence 211 23455666776654322 122 457999999999999987653
No 40
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.54 E-value=1.1e-13 Score=129.65 Aligned_cols=112 Identities=19% Similarity=0.261 Sum_probs=80.4
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecC
Q 004451 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 90 (753)
Q Consensus 11 h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~ 90 (753)
|.+|.++|++ +++|||++|.. .+.|.+| ||++++|||+.+||+||++||||+++.. ...++.+.+....+
T Consensus 1 ~~~~~~vi~~--~~~vLlv~~~~-----~~~~~lP-GG~ve~gEt~~~aa~REl~EEtGl~~~~--~~~l~~~~~~~~~~ 70 (125)
T cd04689 1 HLRARAIVRA--GNKVLLARVIG-----QPHYFLP-GGHVEPGETAENALRRELQEELGVAVSD--GRFLGAIENQWHEK 70 (125)
T ss_pred CeEEEEEEEe--CCEEEEEEecC-----CCCEECC-CCcCCCCCCHHHHHHHHHHHHhCceeec--cEEEEEEeeeeccC
Confidence 6788888886 68999998843 3689999 9999999999999999999999998643 45555554333222
Q ss_pred CCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHH
Q 004451 91 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYK 135 (753)
Q Consensus 91 ~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~ 135 (753)
+. ..+.+.++|.+....... ......++|+.+++|++++++.
T Consensus 71 ~~--~~~~~~~~f~~~~~~~~~-~~~~~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 71 GV--RTHEINHIFAVESSWLAS-DGPPQADEDHLSFSWVPVSDLS 112 (125)
T ss_pred Cc--eEEEEEEEEEEEcccccc-cCCccCccceEEEEEccHHHcc
Confidence 22 246677788876543211 1112334678999999999974
No 41
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=7.5e-14 Score=130.65 Aligned_cols=115 Identities=21% Similarity=0.317 Sum_probs=80.0
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCC
Q 004451 12 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 91 (753)
Q Consensus 12 ~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~ 91 (753)
.+|.++|++ ++|+|||+||...+..++|.|++| ||++++|||+.+||+||++||||+++... ..+..... .. ..
T Consensus 2 ~~v~~vv~~-~~~~iLl~kr~~~~~~~~g~w~~P-gG~ve~gEs~~~aa~RE~~EE~Gl~~~~~--~~~~~~~~-~~-~~ 75 (129)
T cd04699 2 VAVAALIVK-DVGRILILKRSKDERTAPGKWELP-GGKVEEGETFEEALKREVYEETGLTVTPF--LRYPSTVT-HE-DS 75 (129)
T ss_pred ceEEEEEEC-CCCcEEEEEecCCCCCCCCcCcCC-ccCccCCCCHHHHHHHHHHHhhCcEEEee--eeeeEEEE-Ec-CC
Confidence 467788887 568999999987665579999999 99999999999999999999999986432 22221111 11 11
Q ss_pred CcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004451 92 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 139 (753)
Q Consensus 92 g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~ 139 (753)
+ ..+.+.++|.+..... ....++|+.+++|++++++..+..
T Consensus 76 ~--~~~~~~~~~~~~~~~~-----~~~~~~e~~~~~w~~~~el~~~~~ 116 (129)
T cd04699 76 G--VYNVIYLVFVCEALSG-----AVKLSDEHEEYAWVTLEELAILKA 116 (129)
T ss_pred C--EEEEEEEEEEeeecCC-----cccCChhheEEEEecHHHhhhhhc
Confidence 1 1234445565543222 123446888999999999976655
No 42
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=4.5e-14 Score=133.07 Aligned_cols=116 Identities=23% Similarity=0.389 Sum_probs=80.0
Q ss_pred ceEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeee-
Q 004451 10 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNV- 88 (753)
Q Consensus 10 ~h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~- 88 (753)
.+.++.+++++ .+++|||++|+.. |.|.+| ||+|++|||+.+||+||++||||+++.. +..++.+.....
T Consensus 6 ~~~~~~~~v~~-~~~~vLL~~r~~~-----~~w~~P-gG~v~~gEt~~~aa~REl~EE~Gi~~~~--~~~~~~~~~~~~~ 76 (132)
T cd04677 6 ILVGAGVILLN-EQGEVLLQKRSDT-----GDWGLP-GGAMELGESLEETARRELKEETGLEVEE--LELLGVYSGKEFY 76 (132)
T ss_pred cccceEEEEEe-CCCCEEEEEecCC-----CcEECC-eeecCCCCCHHHHHHHHHHHHhCCeeee--eEEEEEecCCcee
Confidence 46788888888 6789999998642 789999 9999999999999999999999999654 344443321111
Q ss_pred --cCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004451 89 --INDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 139 (753)
Q Consensus 89 --~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~ 139 (753)
..++ ..+....+|++...... .+..+.+|+.+++|++++++++++.
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~W~~~~e~~~~~~ 124 (132)
T cd04677 77 VKPNGD--DEQYIVTLYYVTKVFGG---KLVPDGDETLELKFFSLDELPELIN 124 (132)
T ss_pred ecCCCC--cEEEEEEEEEEEeccCC---cccCCCCceeeEEEEChhHCccchh
Confidence 1122 12334444444432211 1244567899999999999977654
No 43
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.54 E-value=1.1e-13 Score=131.09 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=79.6
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCC
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 92 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g 92 (753)
+|.++|.+ ++++||.||... .++.|.+| ||++++|||+.+||.||++||||+++....+.....+.. +..
T Consensus 2 ~v~~ii~~--~~~vLlv~r~~~---~~~~w~~P-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~----~~~ 71 (134)
T cd03675 2 TVAAVVER--DGRFLLVEEETD---GGLVFNQP-AGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTA----PDS 71 (134)
T ss_pred eEEEEEEE--CCEEEEEEEccC---CCceEECC-CccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeec----CCC
Confidence 56677765 689999998653 56899999 999999999999999999999999976544433333322 111
Q ss_pred cccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004451 93 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 139 (753)
Q Consensus 93 ~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~ 139 (753)
....+.++|++....... ....++|+.++.|++++++.++..
T Consensus 72 --~~~~~~~~f~~~~~~~~~---~~~~~~e~~~~~w~~~~el~~~~~ 113 (134)
T cd03675 72 --DTTYLRFAFAAELLEHLP---DQPLDSGIVRAHWLTLEEILALAA 113 (134)
T ss_pred --CeeEEEEEEEEEECCCCC---CCCCCCCceeeEEEeHHHHHhhhh
Confidence 123455678777643321 112346889999999999998764
No 44
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=4.7e-14 Score=130.61 Aligned_cols=108 Identities=19% Similarity=0.237 Sum_probs=79.6
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCC
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 92 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g 92 (753)
+|.++|++ .+|+|||+||+.. +.|.+| ||++++|||+.+||+||++||||+.+. ..+..++.+.+...
T Consensus 2 ~~~~~i~~-~~~~vLL~~r~~~-----~~w~~P-gG~ve~gEt~~~aa~REl~EEtG~~~~-~~~~~~~~~~~~~~---- 69 (120)
T cd04680 2 GARAVVTD-ADGRVLLVRHTYG-----PGWYLP-GGGLERGETFAEAARRELLEELGIRLA-VVAELLGVYYHSAS---- 69 (120)
T ss_pred ceEEEEEC-CCCeEEEEEECCC-----CcEeCC-CCcCCCCCCHHHHHHHHHHHHHCCccc-cccceEEEEecCCC----
Confidence 57888888 6789999998542 389999 999999999999999999999999965 13445555543221
Q ss_pred cccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHH
Q 004451 93 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLL 138 (753)
Q Consensus 93 ~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~ 138 (753)
..+...++|.+...... ...+++|+.+++|++++++++.+
T Consensus 70 --~~~~~~~~f~~~~~~~~----~~~~~~E~~~~~w~~~~~l~~~~ 109 (120)
T cd04680 70 --GSWDHVIVFRARADTQP----VIRPSHEISEARFFPPDALPEPT 109 (120)
T ss_pred --CCceEEEEEEecccCCC----ccCCcccEEEEEEECHHHCcccC
Confidence 12345677777654321 13455799999999999997643
No 45
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.54 E-value=1.7e-13 Score=134.08 Aligned_cols=121 Identities=17% Similarity=0.255 Sum_probs=82.5
Q ss_pred ceEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEE--eee
Q 004451 10 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFL--QQN 87 (753)
Q Consensus 10 ~h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~--~~~ 87 (753)
++.+|.++|++ .+|+|||+||.. .+|.|++| ||++++||++.+||.||++||||+++. .+..++.+. +..
T Consensus 7 ~~~~v~~~i~~-~~g~vLL~~r~~----~~~~w~~P-~G~~~~gE~~~~aa~REl~EEtG~~~~--~~~~~~~~~~~~~y 78 (156)
T PRK00714 7 YRPNVGIILLN-RQGQVFWGRRIG----QGHSWQFP-QGGIDPGETPEQAMYRELYEEVGLRPE--DVEILAETRDWLRY 78 (156)
T ss_pred CCCeEEEEEEe-cCCEEEEEEEcC----CCCeEECC-cccCCCCcCHHHHHHHHHHHHhCCCcc--ceEEEEEcCCeEEe
Confidence 67899999999 688999999964 25899999 999999999999999999999999854 344454431 111
Q ss_pred ecCC-------CcccceEEEEEEEEEEeCCCCCcCccC-CccceeeEEEeCHHHHHhHHh
Q 004451 88 VIND-------GKFINNEFADVYLVTTLNPIPLEAFTL-QQTEVSAVKYIAYEEYKNLLA 139 (753)
Q Consensus 88 ~~~~-------g~~~~~~i~~vy~a~~~~~~~~~~~~~-~~~Ev~e~~Wvs~~El~~l~~ 139 (753)
.++. ..+. ....++|.+..........+.. +++|+.+++|++++|+++++.
T Consensus 79 ~~~~~~~~~~~~~~~-~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~ 137 (156)
T PRK00714 79 DLPKRLVRRSKGVYR-GQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVV 137 (156)
T ss_pred cCcHHHhhccCCccc-CcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhch
Confidence 1111 1011 1234567666532211111112 336999999999999988653
No 46
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.52 E-value=8.9e-14 Score=132.15 Aligned_cols=110 Identities=20% Similarity=0.227 Sum_probs=80.1
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCC
Q 004451 12 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 91 (753)
Q Consensus 12 ~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~ 91 (753)
++..++|.+ +++|||++|+..+ ++|.|.+| ||+++.||++.+||+||++||||+++.. +..++.+.+... .
T Consensus 2 ~~~~~~i~~--~~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl~~~~--~~~~~~~~~~~~--~ 72 (137)
T cd03427 2 LTTLCFIKD--PDKVLLLNRKKGP--GWGGWNGP-GGKVEPGETPEECAIRELKEETGLTIDN--LKLVGIIKFPFP--G 72 (137)
T ss_pred eEEEEEEEE--CCEEEEEEecCCC--CCCeEeCC-ceeCCCCCCHHHHHHHHHHHhhCeEeec--ceEEEEEEEEcC--C
Confidence 466777777 5899999997654 78999999 9999999999999999999999999654 344555544321 1
Q ss_pred CcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 92 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 92 g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
. ..+...++|.+...... .. .++|..+++|+++++++.+
T Consensus 73 ~--~~~~~~~~f~~~~~~~~----~~-~~~e~~~~~W~~~~el~~~ 111 (137)
T cd03427 73 E--EERYGVFVFLATEFEGE----PL-KESEEGILDWFDIDDLPLL 111 (137)
T ss_pred C--CcEEEEEEEEECCcccc----cC-CCCccccceEEcHhhcccc
Confidence 1 23566777777543221 12 2356678999999999764
No 47
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.52 E-value=1.5e-13 Score=129.02 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=76.9
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCC
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 92 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g 92 (753)
++.++|++ .+++|||++|.. .+++|.|.+| ||+++.||++.+||+||++||||+++... ..++.... +
T Consensus 2 ~~~~vv~~-~~~~vLl~~r~~--~~~~~~w~lP-gG~ve~gEt~~~aa~REl~EEtG~~~~~~--~~~~~~~~----~-- 69 (123)
T cd04671 2 IVAAVILN-NQGEVLLIQEAK--RSCRGKWYLP-AGRMEPGETIEEAVKREVKEETGLDCEPT--TLLSVEEQ----G-- 69 (123)
T ss_pred EEEEEEEc-CCCEEEEEEecC--CCCCCeEECc-eeecCCCCCHHHHHHHHHHHHHCCeeecc--eEEEEEcc----C--
Confidence 56778887 678999999864 3468999999 99999999999999999999999997543 23322111 1
Q ss_pred cccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHH
Q 004451 93 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYK 135 (753)
Q Consensus 93 ~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~ 135 (753)
.+.+.++|.+...+... .....++.|+.+++|+++++++
T Consensus 70 ---~~~~~~~f~a~~~~g~~-~~~~~~~~e~~~~~W~~~~el~ 108 (123)
T cd04671 70 ---GSWFRFVFTGNITGGDL-KTEKEADSESLQARWYSNKDLP 108 (123)
T ss_pred ---CeEEEEEEEEEEeCCeE-ccCCCCCcceEEEEEECHHHCC
Confidence 23466778777543211 1111234578899999999994
No 48
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=1.9e-13 Score=128.20 Aligned_cols=113 Identities=25% Similarity=0.303 Sum_probs=78.1
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecC
Q 004451 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 90 (753)
Q Consensus 11 h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~ 90 (753)
|++..+++. +++|||+||.. .+.|.+| ||+++.||++.+||.||+.||||+++.. ...++.+.......
T Consensus 2 ~~v~~vi~~---~~~vLl~~~~~-----~~~w~lP-gG~ve~gEs~~~aa~RE~~EEtGl~~~~--~~~~~~~~~~~~~~ 70 (126)
T cd04688 2 VRAAAIIIH---NGKLLVQKNPD-----ETFYRPP-GGGIEFGESSEEALIREFKEELGLKIEI--TRLLGVVENIFTYN 70 (126)
T ss_pred eEEEEEEEE---CCEEEEEEeCC-----CCeEECC-CccccCCCCHHHHHHHHHHHHhCCceec--ceeeEEEEEeeccC
Confidence 455666654 35999998854 5889999 9999999999999999999999998654 33444433222112
Q ss_pred CCcccceEEEEEEEEEEeCCCCCc---CccCCccceeeEEEeCHHHHHh
Q 004451 91 DGKFINNEFADVYLVTTLNPIPLE---AFTLQQTEVSAVKYIAYEEYKN 136 (753)
Q Consensus 91 ~g~~~~~~i~~vy~a~~~~~~~~~---~~~~~~~Ev~e~~Wvs~~El~~ 136 (753)
+ ...+.+.++|.+......... ....+++|+.++.|++++++..
T Consensus 71 ~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~ 117 (126)
T cd04688 71 G--KPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKE 117 (126)
T ss_pred C--cccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHccc
Confidence 1 124667788888775432210 0112456899999999999964
No 49
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=1.5e-13 Score=127.15 Aligned_cols=107 Identities=26% Similarity=0.472 Sum_probs=79.2
Q ss_pred EEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCCc
Q 004451 14 VNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGK 93 (753)
Q Consensus 14 V~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g~ 93 (753)
+.+++++ .++++||.||.. .|.|.+| ||++++||++.+||.||++||||+++....+..++.+........+
T Consensus 3 ~~~~v~~-~~~~vLl~~r~~-----~~~w~~P-gG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~- 74 (118)
T cd04690 3 AAALILV-RDGRVLLVRKRG-----TDVFYLP-GGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPG- 74 (118)
T ss_pred EEEEEEe-cCCeEEEEEECC-----CCcEECC-CCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCC-
Confidence 4556666 578999988853 3789999 9999999999999999999999998654447888877654322111
Q ss_pred ccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHh
Q 004451 94 FINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 136 (753)
Q Consensus 94 ~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~ 136 (753)
.+...++|.+.... .+. ..+|+.+++|++++++..
T Consensus 75 --~~~~~~~f~~~~~~-----~~~-~~~e~~~~~W~~~~e~~~ 109 (118)
T cd04690 75 --VDVRATVYVAELTG-----EPV-PAAEIEEIRWVDYDDPAD 109 (118)
T ss_pred --cEEEEEEEEEcccC-----CcC-CCchhhccEEecHHHccc
Confidence 35567788876533 122 346889999999999843
No 50
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.50 E-value=1.1e-13 Score=131.38 Aligned_cols=106 Identities=20% Similarity=0.353 Sum_probs=80.6
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCC
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 92 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g 92 (753)
+|.++|++ ++++|||+||... .+|.|.+| ||+++.|||+.+||.||++||||+++. .+..++.+.+..
T Consensus 2 ~v~i~l~~-~~~~vLL~~r~~~---~~~~w~lP-gG~ie~gEt~~~aA~REl~EEtGl~~~--~~~~l~~~~~~~----- 69 (131)
T cd03429 2 AVIVLVID-GGDRILLARQPRF---PPGMYSLL-AGFVEPGESLEEAVRREVKEEVGIRVK--NIRYVGSQPWPF----- 69 (131)
T ss_pred eEEEEEEe-CCCEEEEEEecCC---CCCcCcCC-cccccCCCCHHHHHhhhhhhccCceee--eeEEEeecCCCC-----
Confidence 56777787 5689999998642 26899998 999999999999999999999999963 455555543211
Q ss_pred cccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 93 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 93 ~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
.+.+.++|++..... ++..+++|+.++.|++++++.++
T Consensus 70 ---~~~~~~~f~~~~~~~----~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 70 ---PSSLMLGFTAEADSG----EIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred ---CceEEEEEEEEEcCC----cccCCchhhhccEeecHHHHhhc
Confidence 134567788875432 23556679999999999999876
No 51
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=1.9e-13 Score=128.38 Aligned_cols=112 Identities=19% Similarity=0.289 Sum_probs=75.6
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecC
Q 004451 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 90 (753)
Q Consensus 11 h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~ 90 (753)
+.+|.++|++ .+++|||.||... ++|.|.+| ||+++.|||+.+||+||++||||+++.. +..+..... . +
T Consensus 2 ~~~~~~~v~~-~~~~vLl~~r~~~---~~~~w~~P-GG~ve~gEt~~~aa~RE~~EE~Gl~~~~--~~~~~~~~~-~--~ 71 (127)
T cd04670 2 TVGVGGLVLN-EKNEVLVVQERNK---TPNGWKLP-GGLVDPGEDIFDGAVREVLEETGIDTEF--VSVVGFRHA-H--P 71 (127)
T ss_pred eeEEEEEEEc-CCCeEEEEEccCC---CCCcEECC-CccCCCCCCHHHHHHHHHHHHHCCCcce--eEEEEEEec-C--C
Confidence 4678889998 6789999887542 68999999 9999999999999999999999998643 222222211 1 1
Q ss_pred CCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 91 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 91 ~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
.. .+.....|.+.... .. ..+.++++|+.+++|+++++++..
T Consensus 72 ~~---~~~~~~~~~~~~~~-~~-~~~~~~~~E~~~~~w~~~~el~~~ 113 (127)
T cd04670 72 GA---FGKSDLYFICRLKP-LS-FDINFDTSEIAAAKWMPLEEYISQ 113 (127)
T ss_pred CC---cCceeEEEEEEEcc-Cc-CcCCCChhhhheeEEEcHHHHhcc
Confidence 11 11122223343321 11 123455678899999999999653
No 52
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.49 E-value=5.8e-13 Score=124.90 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=79.5
Q ss_pred EEEEEEEecC--CCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecC
Q 004451 13 TVNAWIFAES--TQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 90 (753)
Q Consensus 13 aV~v~V~~~~--~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~ 90 (753)
+++++++..+ .++|||.+|... |.|.+| ||+++.|||+.+||+||++||||+++... +..++++.+..+..
T Consensus 2 ~~g~v~~~~~~~~~~vLLv~~~~~-----~~w~~P-gG~ve~~E~~~~aa~RE~~EEtG~~~~~~-~~~l~~~~~~~~~~ 74 (122)
T cd04666 2 QAGAIPYRETGGEVEVLLVTSRRT-----GRWIVP-KGGPEKDESPAEAAAREAWEEAGVRGKIG-KRPLGRFEYRKRSK 74 (122)
T ss_pred EEEEEEEEEcCCceEEEEEEecCC-----CeEECC-CCCcCCCCCHHHHHHHHHHHHhCCccccc-ceEEEEEEeeecCC
Confidence 4566776633 258999888531 889999 99999999999999999999999986432 26777777654321
Q ss_pred CCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004451 91 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 139 (753)
Q Consensus 91 ~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~ 139 (753)
+. ..+...++|.+....... .....++.+++|++++++.+++.
T Consensus 75 ~~--~~~~~~~~f~~~~~~~~~----~~~~~e~~~~~W~~~~ea~~~~~ 117 (122)
T cd04666 75 NR--PPRCEVAVFPLEVTEELD----EWPEMHQRKRKWFSPEEAALLVE 117 (122)
T ss_pred CC--CceEEEEEEEEEEecccc----CCcccCceEEEEecHHHHHHhcC
Confidence 11 124455666666543221 22234678899999999988764
No 53
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.49 E-value=4.2e-13 Score=125.48 Aligned_cols=113 Identities=22% Similarity=0.332 Sum_probs=77.6
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecC
Q 004451 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 90 (753)
Q Consensus 11 h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~ 90 (753)
...|.++|++ +++|||.+|.. .|.|.+| ||++++|||+.+||+||++||||+.+.. ..+..+.......
T Consensus 2 ~~~v~~~i~~--~~~vLL~~~~~-----~~~w~~P-GG~ve~gEs~~~aa~REl~EEtG~~~~~---~~~~~~~~~~~~~ 70 (123)
T cd04672 2 KVDVRAAIFK--DGKILLVREKS-----DGLWSLP-GGWADVGLSPAENVVKEVKEETGLDVKV---RKLAAVDDRNKHH 70 (123)
T ss_pred cceEEEEEEE--CCEEEEEEEcC-----CCcEeCC-ccccCCCCCHHHHHHHHHHHHhCCeeeE---eEEEEEecccccc
Confidence 4578889988 48999988853 4899999 9999999999999999999999998633 2332222111111
Q ss_pred CCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004451 91 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 139 (753)
Q Consensus 91 ~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~ 139 (753)
......+.+..+|.+..... .+... +|+.+++|+++++++++..
T Consensus 71 ~~~~~~~~~~~~f~~~~~~~----~~~~~-~E~~~~~W~~~~el~~l~~ 114 (123)
T cd04672 71 PPPQPYQVYKLFFLCEILGG----EFKPN-IETSEVGFFALDDLPPLSE 114 (123)
T ss_pred CCCCceEEEEEEEEEEecCC----cccCC-CceeeeEEECHHHCccccc
Confidence 11012355556676765322 12333 6889999999999977643
No 54
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.48 E-value=4.9e-13 Score=126.60 Aligned_cols=111 Identities=26% Similarity=0.394 Sum_probs=73.6
Q ss_pred EEEEEEec--CCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCce-EEEEEEEeeeecC
Q 004451 14 VNAWIFAE--STQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAF-EFVFTFLQQNVIN 90 (753)
Q Consensus 14 V~v~V~~~--~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L-~~l~~~~~~~~~~ 90 (753)
|+++|+-+ .+++|||.||+.. ++|.|.+| ||++++|||+.+||+||++||||+++..... ..+..+ +.. +
T Consensus 2 ~~~v~~~~~~~~~~vLl~~r~~~---~~g~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~-~~~--~ 74 (131)
T cd04695 2 VSGVLLRSLDKETKVLLLKRVKT---LGGFWCHV-AGGVEAGETAWQAALRELKEETGISLPELYNADYLEQF-YEA--N 74 (131)
T ss_pred ceEEEEEEcCCCCEEEEEEecCC---CCCcEECC-cccccCCCCHHHHHHHHHHHHhCCCccccccccceeeE-eec--C
Confidence 44444422 4569999999653 68999998 9999999999999999999999998653211 111111 111 1
Q ss_pred CCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHH
Q 004451 91 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLL 138 (753)
Q Consensus 91 ~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~ 138 (753)
. .......+|++...... ...+ ++|+.+++|++++++.++.
T Consensus 75 ~---~~~~~~~~f~~~~~~~~---~~~~-~~E~~~~~W~~~~e~~~~~ 115 (131)
T cd04695 75 D---NRILMAPVFVGFVPPHQ---EVVL-NHEHTEYRWCSFAEALELA 115 (131)
T ss_pred C---ceEEEEEEEEEEecCCC---cccc-CchhcccEecCHHHHHHhc
Confidence 1 12334556776653221 1223 3689999999999998764
No 55
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.48 E-value=3.4e-13 Score=126.85 Aligned_cols=113 Identities=27% Similarity=0.393 Sum_probs=78.6
Q ss_pred EEEEEEEEecCCC--EEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeec
Q 004451 12 RTVNAWIFAESTQ--ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVI 89 (753)
Q Consensus 12 ~aV~v~V~~~~~g--~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~ 89 (753)
++++++|++.+++ +|||.||+. |.|.+| ||++++|||+.+||+||++||||+++... ..+..+......
T Consensus 3 ~~~g~vi~~~~~~~~~vLl~~~~~------~~w~~P-gG~ve~gEs~~~aa~REl~EEtGl~~~~~--~~~~~~~~~~~~ 73 (130)
T cd03428 3 RSAGAIIYRRLNNEIEYLLLQASY------GHWDFP-KGHVEPGEDDLEAALRETEEETGITAEQL--FIVLGFKETLNY 73 (130)
T ss_pred eEEEEEEEEecCCCceEEEEEccC------CcCcCC-cCCCCCCCCHHHHHHHHHHHHHCCChhhh--hhhccceeEEEc
Confidence 5788888875332 689998853 889999 99999999999999999999999996543 232222211111
Q ss_pred CCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004451 90 NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 139 (753)
Q Consensus 90 ~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~ 139 (753)
... ..+...++|.+...... .+.++ +|+.+++|++++++.+++.
T Consensus 74 ~~~--~~~~~~~~f~~~~~~~~---~~~~~-~E~~~~~W~~~~e~~~~~~ 117 (130)
T cd03428 74 QVR--GKLKTVTYFLAELRPDV---EVKLS-EEHQDYRWLPYEEALKLLT 117 (130)
T ss_pred ccc--CcceEEEEEEEEeCCCC---ccccc-cceeeEEeecHHHHHHHcC
Confidence 111 13456677877664221 22344 6899999999999988764
No 56
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=6.1e-13 Score=126.65 Aligned_cols=120 Identities=20% Similarity=0.250 Sum_probs=79.4
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCcc-CCCceEEEEEEEeeeecC
Q 004451 12 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINL-PKDAFEFVFTFLQQNVIN 90 (753)
Q Consensus 12 ~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v-~~~~L~~l~~~~~~~~~~ 90 (753)
++++++|++ .+|+|||++|...+..+++.|.+| ||+++.||++.+||.||++||||+.+ ....+.....+.+.. .
T Consensus 1 ~~~~~~i~~-~~g~vLl~r~~~~~~~~~~~w~~P-gG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~--~ 76 (133)
T cd04685 1 RAARVVLLD-PDDRVLLLRGDDPDSPGPDWWFTP-GGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTF--L 76 (133)
T ss_pred CeEEEEEEc-CCCeEEEEEEeCCCCCCCCEEECC-cCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEe--c
Confidence 578999999 688999998866443577899998 99999999999999999999999986 333222222211211 1
Q ss_pred CCcccceEEEEEEEEEEeCCCCC-cCcc-CCccceeeEEEeCHHHHHhH
Q 004451 91 DGKFINNEFADVYLVTTLNPIPL-EAFT-LQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 91 ~g~~~~~~i~~vy~a~~~~~~~~-~~~~-~~~~Ev~e~~Wvs~~El~~l 137 (753)
+. ..+...++|.+........ .... .+..++..++|++++++.+.
T Consensus 77 ~~--~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 77 GV--DGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred Cc--cceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 11 1234556677765431110 0011 11234567999999999763
No 57
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.47 E-value=4.9e-13 Score=126.42 Aligned_cols=113 Identities=22% Similarity=0.221 Sum_probs=80.7
Q ss_pred ccccccCCceEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEE
Q 004451 2 SEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVF 81 (753)
Q Consensus 2 ~~vh~~g~~h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~ 81 (753)
..+|+... ..+|.+++++ +++|||.||... +..|.|++| ||++++||++.+||+||++||||+++.. ...++
T Consensus 5 ~~~~~~~~-~~~v~~ii~~--~~~vLL~kr~~~--~~~g~w~lP-gG~ve~gE~~~~a~~REl~EEtGl~~~~--~~~~~ 76 (130)
T cd04511 5 GYIHYQNP-KIIVGCVPEW--EGKVLLCRRAIE--PRHGFWTLP-AGFMENGETTEQGALRETWEEAGARVEI--DGLYA 76 (130)
T ss_pred ccccCCCC-cEEEEEEEec--CCEEEEEEecCC--CCCCeEECC-cccccCCCCHHHHHHHHHHHHhCCEEEe--eeEEE
Confidence 34566543 4567777776 589999999653 467999999 9999999999999999999999998643 22333
Q ss_pred EEEeeeecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHH
Q 004451 82 TFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYK 135 (753)
Q Consensus 82 ~~~~~~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~ 135 (753)
.+.. +. .+.+.++|.+...... +. ...|..+++|+++++|+
T Consensus 77 ~~~~----~~----~~~~~~~f~~~~~~~~----~~-~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 77 VYSV----PH----ISQVYMFYRARLLDLD----FA-PGPESLEVRLFTEEEIP 117 (130)
T ss_pred EEec----CC----ceEEEEEEEEEEcCCc----cc-CCcchhceEEECHHHCC
Confidence 3321 21 2456677888764321 12 23577889999999996
No 58
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.46 E-value=7.2e-13 Score=145.34 Aligned_cols=116 Identities=19% Similarity=0.322 Sum_probs=83.6
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEE----EEEEEee
Q 004451 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEF----VFTFLQQ 86 (753)
Q Consensus 11 h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~----l~~~~~~ 86 (753)
.++|+++|+. +|+|||++|.. .+.+|.|.+| ||++++|||+.+||+||++||||+++....+.. ...|.++
T Consensus 203 ~vtv~avv~~--~g~VLLvrR~~--~p~~g~W~lP-GG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p 277 (340)
T PRK05379 203 FVTVDAVVVQ--SGHVLLVRRRA--EPGKGLWALP-GGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHP 277 (340)
T ss_pred ceEEEEEEEE--CCEEEEEEecC--CCCCCeEECC-cccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCC
Confidence 4788888876 68999999976 3468999999 999999999999999999999999875443322 2233332
Q ss_pred eecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 87 NVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 87 ~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
.+. ...+.++++|++....... ..+ ...+|+.+++|++++++..+
T Consensus 278 ~r~----~~~~~i~~~f~~~~~~~~~-~~~-~~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 278 GRS----LRGRTITHAFLFEFPAGEL-PRV-KGGDDADKARWVPLAELLAM 322 (340)
T ss_pred CCC----CCCcEEEEEEEEEecCCcc-Ccc-CCCCceeeEEEEEHHHhhhh
Confidence 221 1246778888886543211 112 23468899999999999763
No 59
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.46 E-value=5.5e-13 Score=124.35 Aligned_cols=113 Identities=21% Similarity=0.349 Sum_probs=78.2
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEE---eeee
Q 004451 12 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFL---QQNV 88 (753)
Q Consensus 12 ~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~---~~~~ 88 (753)
.+|.++|++ ++++|||+||... |.|++| ||+++.||++.+||.||++||||+++.. ...++.+. +...
T Consensus 3 ~~v~~ii~~-~~~~vLl~~r~~~-----~~w~lP-gG~v~~~E~~~~aa~REl~EE~Gl~~~~--~~~~~~~~~~~~~~~ 73 (129)
T cd04676 3 PGVTAVVRD-DEGRVLLIRRSDN-----GLWALP-GGAVEPGESPADTAVREVREETGLDVEV--TGLVGIYTGPVHVVT 73 (129)
T ss_pred ceEEEEEEC-CCCeEEEEEecCC-----CcEECC-eeccCCCCCHHHHHHHHHHHHhCceeEe--eEEEEEeecccceee
Confidence 467788888 6789999999652 899999 9999999999999999999999998643 23322221 1111
Q ss_pred cCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHH
Q 004451 89 INDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLL 138 (753)
Q Consensus 89 ~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~ 138 (753)
.+.+. ..+.+..+|++...... ......|..+++|++++++..+.
T Consensus 74 ~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~w~~~~el~~~~ 118 (129)
T cd04676 74 YPNGD-VRQYLDITFRCRVVGGE----LRVGDDESLDVAWFDPDGLPPLL 118 (129)
T ss_pred cCCCC-cEEEEEEEEEEEeeCCe----ecCCCCceeEEEEEChhhCcccc
Confidence 12221 13556666776543321 12345688899999999997653
No 60
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.46 E-value=5.5e-13 Score=124.61 Aligned_cols=107 Identities=21% Similarity=0.299 Sum_probs=72.4
Q ss_pred EEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCCc
Q 004451 14 VNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGK 93 (753)
Q Consensus 14 V~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g~ 93 (753)
+.++|++ ++++|||+||... ..+.|.+| ||+++.|||+.+||+||++||||+++... ..++.+.+ ++
T Consensus 3 ~~~ii~~-~~~~vLL~~r~~~---~~~~w~lP-GG~ve~gEs~~~a~~REl~EEtGl~~~~~--~~~~~~~~----~~-- 69 (121)
T cd04669 3 ASIVIIN-DQGEILLIRRIKP---GKTYYVFP-GGGIEEGETPEEAAKREALEELGLDVRVE--EIFLIVNQ----NG-- 69 (121)
T ss_pred eEEEEEe-CCCEEEEEEEecC---CCCcEECC-ceeccCCCCHHHHHHHHHHHhhCeeEeee--eEEEEEee----CC--
Confidence 4556666 5689999998542 35899999 99999999999999999999999997442 23333322 11
Q ss_pred ccceEEEEEEEEEEeCCCCC----cCc-cCCccceeeEEEeCHHHHHhH
Q 004451 94 FINNEFADVYLVTTLNPIPL----EAF-TLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 94 ~~~~~i~~vy~a~~~~~~~~----~~~-~~~~~Ev~e~~Wvs~~El~~l 137 (753)
...++|.+........ ... ..++.++.+++|+++++++++
T Consensus 70 ----~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l 114 (121)
T cd04669 70 ----RTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI 114 (121)
T ss_pred ----cEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence 2346777765432110 000 112345678999999999765
No 61
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.44 E-value=1e-12 Score=126.96 Aligned_cols=111 Identities=20% Similarity=0.318 Sum_probs=73.7
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCC
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 92 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g 92 (753)
+++++|++.++++|||+||.. ++.|++| ||+++.|||+.+||+||++||||+++.. +.....+ .....
T Consensus 3 ~~gaii~~~~~~~vLLvr~~~-----~~~W~lP-GG~ve~gEs~~~AA~REl~EETGl~v~~--~~~~~~~--~~~~~-- 70 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGWK-----SKSWSFP-KGKINKDEDDHDCAIREVYEETGFDISK--YIDKDDY--IELII-- 70 (145)
T ss_pred eeEEEEEeCCCCEEEEEEecC-----CCCEECC-CccCCCCcCHHHHHHHHHHHhhCcccee--cccccee--eeccc--
Confidence 577888883346999998843 3589999 9999999999999999999999998643 1111111 11111
Q ss_pred cccceEEEEEEEEEEeCCCCCcCccC-CccceeeEEEeCHHHHHhHHhc
Q 004451 93 KFINNEFADVYLVTTLNPIPLEAFTL-QQTEVSAVKYIAYEEYKNLLAK 140 (753)
Q Consensus 93 ~~~~~~i~~vy~a~~~~~~~~~~~~~-~~~Ev~e~~Wvs~~El~~l~~~ 140 (753)
. ....++|++....... ...+ .++|+.+++|++++++++++..
T Consensus 71 --~-~~~~~~f~~~~~~~~~--~~~~~~~~E~~~~~Wv~~~el~~~~~~ 114 (145)
T cd03672 71 --R-GQNVKLYIVPGVPEDT--PFEPKTRKEISKIEWFDIKDLPTKKNK 114 (145)
T ss_pred --C-CcEEEEEEEecCCCCc--ccCcCChhhhheEEEeeHHHhhhhhhh
Confidence 1 1233455554221111 1122 2468999999999999988763
No 62
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.43 E-value=1.6e-12 Score=119.44 Aligned_cols=95 Identities=22% Similarity=0.424 Sum_probs=70.8
Q ss_pred CCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCCcccceEEEE
Q 004451 22 STQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFAD 101 (753)
Q Consensus 22 ~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g~~~~~~i~~ 101 (753)
.+++|||++|.. |.|.+| ||++++||++.+||.||+.||||+.+. .+..++.+.. .+...+
T Consensus 9 ~~~~vLlv~r~~------~~w~~P-gG~ve~gE~~~~aa~REl~EEtGl~~~--~~~~~~~~~~----------~~~~~~ 69 (112)
T cd04667 9 RGGRVLLVRKSG------SRWALP-GGKIEPGETPLQAARRELQEETGLQGL--DLLYLFHVDG----------GSTRHH 69 (112)
T ss_pred cCCEEEEEEcCC------CcEeCC-CCcCCCCCCHHHHHHHHHHHHhCCccc--ceEEEEEEeC----------CCEEEE
Confidence 467999999842 889999 999999999999999999999999853 4555555421 123456
Q ss_pred EEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004451 102 VYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 139 (753)
Q Consensus 102 vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~ 139 (753)
+|.+...... ....++|+.+++|++++++.++..
T Consensus 70 ~f~~~~~~~~----~~~~~~e~~~~~W~~~~el~~~~~ 103 (112)
T cd04667 70 VFVASVPPSA----QPKPSNEIADCRWLSLDALGDLNA 103 (112)
T ss_pred EEEEEcCCcC----CCCCchheeEEEEecHHHhhhccc
Confidence 7777643321 123457889999999999987543
No 63
>PLN02839 nudix hydrolase
Probab=99.43 E-value=2.7e-12 Score=138.43 Aligned_cols=166 Identities=20% Similarity=0.181 Sum_probs=125.4
Q ss_pred ccCCceEEEEEEEEec--CCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccC-CCceEEEEE
Q 004451 6 RVGDYHRTVNAWIFAE--STQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLP-KDAFEFVFT 82 (753)
Q Consensus 6 ~~g~~h~aV~v~V~~~--~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~-~~~L~~l~~ 82 (753)
..|....+|++-.+-. .+.+++++||+..|..+||+|++.+||++..||++.++++||+.||.||+.. ...+..+++
T Consensus 198 lfGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~ 277 (372)
T PLN02839 198 YFGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGA 277 (372)
T ss_pred ccCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEE
Confidence 3455566666554421 2347999999999999999999999999999999999999999999999832 235778899
Q ss_pred EEeeeecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcCCCCcccCCCCCchhHHHHHHH
Q 004451 83 FLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYDVNGGYGQLFNIIS 162 (753)
Q Consensus 83 ~~~~~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~~~~~~pw~~~~~~~~~f~~i~ 162 (753)
++|....+.+ ..++..++|.+.++.++. +.++++|++++.+++++|+.+.+.. .+.|+|.+.. .++++++
T Consensus 278 VsY~~~~~~g--~~~evly~YDLeLP~df~---P~~qDGEVe~F~Lm~v~EV~~~l~~-~~~fKpn~aL----ViiDFLi 347 (372)
T PLN02839 278 VSYMDIDQYC--FKRDVLFCYDLELPQDFV---PKNQDGEVESFKLIPVAQVANVIRK-TSFFKANCSL----VIIDFLF 347 (372)
T ss_pred EEEEEEcCCc--cccCEEEEeeeecCCccc---cCCCccceeEEEEecHHHHHHHHHc-CCCCCcccHH----HHHHHHH
Confidence 8887544443 346667788887655432 3677899999999999999998874 2468898653 7888888
Q ss_pred HH--hhhhhhhhhHHHHHHHhh
Q 004451 163 QR--YKENTMERSLTLQKQLRR 182 (753)
Q Consensus 163 ~~--~~~~~~~~~lell~r~~~ 182 (753)
++ +.++ .+.+.++.+++++
T Consensus 348 RhG~Itpe-~p~y~ei~~rlh~ 368 (372)
T PLN02839 348 RHGFIRPE-SSGYLDLYRRLRN 368 (372)
T ss_pred HcCCCCCC-CCCHHHHHHHhhc
Confidence 85 3334 4677777777654
No 64
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.42 E-value=2.6e-12 Score=121.77 Aligned_cols=112 Identities=23% Similarity=0.238 Sum_probs=74.8
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEe--eeecC
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQ--QNVIN 90 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~--~~~~~ 90 (753)
+|.++|++ +++|||++|.. .+.|.+| ||++++||++.+||+||++||||+.+. .....++.+.. ....+
T Consensus 2 ~~~~ii~~--~~~vLLv~~~~-----~~~w~lP-gG~ve~gEt~~~aa~REl~EEtGl~~~-~~~~~l~~~~~~~~~~~~ 72 (131)
T cd04686 2 AVRAIILQ--GDKILLLYTKR-----YGDYKFP-GGGVEKGEDHIEGLIRELQEETGATNI-RVIEKFGTYTERRPWRKP 72 (131)
T ss_pred cEEEEEEE--CCEEEEEEEcC-----CCcEECc-cccCCCCCCHHHHHHHHHHHHHCCccc-ccceEEEEEEeeccccCC
Confidence 57888887 58999998843 2689999 999999999999999999999999852 11334444432 11122
Q ss_pred CCcccceEEEEEEEEEEeCCCCCcCccCCccce---eeEEEeCHHHHHh
Q 004451 91 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEV---SAVKYIAYEEYKN 136 (753)
Q Consensus 91 ~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev---~e~~Wvs~~El~~ 136 (753)
++. ..+.+.++|.+....... ...+++.|. ..+.|++++++.+
T Consensus 73 ~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~W~~~~ea~~ 118 (131)
T cd04686 73 DAD-IFHMISYYYLCEVDAELG--AQQLEDYEAELGMKPIWINIHEAIE 118 (131)
T ss_pred CCc-eeEEEEEEEEEEEcCCcC--CcccchhhHhcCCCcEEecHHHHHH
Confidence 221 234566778877643321 123333333 3589999999975
No 65
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.42 E-value=2.6e-12 Score=121.75 Aligned_cols=106 Identities=25% Similarity=0.386 Sum_probs=72.2
Q ss_pred EEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCCcc
Q 004451 15 NAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKF 94 (753)
Q Consensus 15 ~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g~~ 94 (753)
.++|++ ++++|||+||... ..++|+|.+| ||++++||++.+|++||+.||||+++.... .++.+.+.. ++
T Consensus 7 ~~~ii~-~~~~vLL~~R~~~-~~~~g~w~~P-gG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~--~~~~~~~~~--~~--- 76 (135)
T PRK10546 7 VAAIIE-RDGKILLAQRPAH-SDQAGLWEFA-GGKVEPGESQPQALIRELREELGIEATVGE--YVASHQREV--SG--- 76 (135)
T ss_pred EEEEEe-cCCEEEEEEccCC-CCCCCcEECC-cccCCCCCCHHHHHHHHHHHHHCCccccce--eEEEEEEec--CC---
Confidence 333334 4789999999654 3578999999 999999999999999999999999965432 344443321 11
Q ss_pred cceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 95 INNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 95 ~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
.+...++|.+..... .+...|..+++|++++++.++
T Consensus 77 -~~~~~~~~~~~~~~~------~~~~~e~~~~~W~~~~el~~~ 112 (135)
T PRK10546 77 -RRIHLHAWHVPDFHG------ELQAHEHQALVWCTPEEALRY 112 (135)
T ss_pred -cEEEEEEEEEEEecC------cccccccceeEEcCHHHcccC
Confidence 122344565543221 112246778999999999764
No 66
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.41 E-value=1.9e-12 Score=136.37 Aligned_cols=106 Identities=18% Similarity=0.301 Sum_probs=79.7
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCC
Q 004451 12 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 91 (753)
Q Consensus 12 ~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~ 91 (753)
.+|.++|.+ +++|||.||...+ +|.|.+| ||++++|||+++||+||++||||+++. .+..+++..+. ++
T Consensus 133 paViv~V~~--~~~iLL~rr~~~~---~g~wslP-gG~vE~GEs~eeAa~REv~EEtGl~v~--~~~~~~s~~~~--~p- 201 (256)
T PRK00241 133 PCIIVAVRR--GDEILLARHPRHR---NGVYTVL-AGFVEVGETLEQCVAREVMEESGIKVK--NLRYVGSQPWP--FP- 201 (256)
T ss_pred CEEEEEEEe--CCEEEEEEccCCC---CCcEeCc-ccCCCCCCCHHHHhhhhhhhccCceee--eeEEEEeEeec--CC-
Confidence 345555554 6899999886532 6999998 999999999999999999999999864 46666655432 22
Q ss_pred CcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 92 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 92 g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
+.+.+.|.+..... ++.++++|+.+++|++++|++.+
T Consensus 202 -----~~lm~~f~a~~~~~----~~~~~~~Ei~~a~W~~~del~~l 238 (256)
T PRK00241 202 -----HSLMLGFHADYDSG----EIVFDPKEIADAQWFRYDELPLL 238 (256)
T ss_pred -----CeEEEEEEEEecCC----cccCCcccEEEEEEECHHHCccc
Confidence 34667888876432 24566679999999999998654
No 67
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.40 E-value=3.3e-12 Score=117.91 Aligned_cols=107 Identities=27% Similarity=0.413 Sum_probs=77.9
Q ss_pred EEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCCc
Q 004451 14 VNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGK 93 (753)
Q Consensus 14 V~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g~ 93 (753)
+.++|++ +++++||++|+..+ .++|+|.+| ||+++.+|++.+||.||+.||||+++.. ...++.+.+.. ++
T Consensus 4 ~~~~i~~-~~~~~Ll~~r~~~~-~~~g~w~~p-~G~~~~~e~~~~~a~Re~~EE~g~~~~~--~~~~~~~~~~~--~~-- 74 (124)
T cd03425 4 VAAIIID-DDGRILIAQRPAGK-HLGGLWEFP-GGKVEPGETPEQALVRELREELGIEVEV--GELLATVEHDY--PD-- 74 (124)
T ss_pred EEEEEEC-CCCEEEEEEeCCCC-CCCCeEeCC-CcccCCCCCHHHHHHHHHHHhhCcEEec--cceEEEEEeeC--CC--
Confidence 4445556 56899999997655 689999998 9999999999999999999999998543 34555554432 21
Q ss_pred ccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 94 FINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 94 ~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
.+...++|.+...... ..+.|..++.|++++++.++
T Consensus 75 --~~~~~~~~~~~~~~~~------~~~~e~~~~~W~~~~el~~~ 110 (124)
T cd03425 75 --KRVTLHVFLVELWSGE------PQLLEHQELRWVPPEELDDL 110 (124)
T ss_pred --CeEEEEEEEEeeeCCC------cccccCceEEEeeHHHcccC
Confidence 2445667777543221 12457788999999999754
No 68
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.39 E-value=4.2e-12 Score=116.20 Aligned_cols=110 Identities=25% Similarity=0.410 Sum_probs=81.6
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCC
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 92 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g 92 (753)
++.+++++ .+++|||++|... ++|.|.+| ||+++.||++.++|.||+.||+|+.+.. ......+.+.....
T Consensus 2 ~~~~i~~~-~~~~ill~kr~~~---~~~~~~~p-~G~~~~~e~~~~~a~RE~~EE~Gl~~~~--~~~~~~~~~~~~~~-- 72 (123)
T cd02883 2 AVGAVILD-EDGRVLLVRRADS---PGGLWELP-GGGVEPGETLEEAAIREVREETGLDVDV--LRLLGVYEVESPDE-- 72 (123)
T ss_pred ceEEEEEC-CCCCEEEEEEcCC---CCCeEeCC-cccccCCCCHHHHHHHHHHHhhCcccee--eeEEEEEEeeccCC--
Confidence 67888888 4589999999764 78999999 9999999999999999999999998542 34444444433221
Q ss_pred cccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHh
Q 004451 93 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 136 (753)
Q Consensus 93 ~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~ 136 (753)
..+...++|.+....... ...++.|+.+++|++++++.+
T Consensus 73 --~~~~~~~~~~~~~~~~~~---~~~~~~e~~~~~w~~~~~l~~ 111 (123)
T cd02883 73 --GEHAVVFVFLARLVGGEP---TLLPPDEISEVRWVTLDELPA 111 (123)
T ss_pred --CceEEEEEEEEEeCCCCc---CCCCCCccceEEEEcHHHCcc
Confidence 235677788886644321 024456888999999999976
No 69
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.38 E-value=5.2e-12 Score=118.04 Aligned_cols=107 Identities=21% Similarity=0.273 Sum_probs=72.8
Q ss_pred EEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCCc
Q 004451 14 VNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGK 93 (753)
Q Consensus 14 V~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g~ 93 (753)
+.++|.+ ++|+|||+||... ..++|+|++| ||++++||++.+||.||+.||||+++.. ...++.+.+.. ++.
T Consensus 7 ~~~ii~~-~~~~vll~rR~~~-~~~~g~w~~P-gG~~~~gE~~~~a~~Re~~EE~gl~~~~--~~~~~~~~~~~--~~~- 78 (129)
T PRK10776 7 AVGIIRN-PNNEIFITRRAAD-AHMAGKWEFP-GGKIEAGETPEQALIRELQEEVGITVQH--ATLFEKLEYEF--PDR- 78 (129)
T ss_pred EEEEEEC-CCCEEEEEEecCC-CCCCCeEECC-ceecCCCCCHHHHHHHHHHHHHCCceec--ceEEEEEEeeC--CCc-
Confidence 3344556 5679999999764 4578999999 9999999999999999999999998543 33444444322 211
Q ss_pred ccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 94 FINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 94 ~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
+...++|.+..... .+.+.|..+++|+++++++..
T Consensus 79 ---~~~~~~~~~~~~~~------~~~~~e~~~~~W~~~~~l~~~ 113 (129)
T PRK10776 79 ---HITLWFWLVESWEG------EPWGKEGQPGRWVSQVALNAD 113 (129)
T ss_pred ---EEEEEEEEEEEECC------ccCCccCCccEEecHHHCccC
Confidence 22234454433211 122346788999999999653
No 70
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.36 E-value=5.2e-12 Score=120.00 Aligned_cols=107 Identities=20% Similarity=0.197 Sum_probs=71.3
Q ss_pred CCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceE--EEEEEEeeeecCCCc---ccc
Q 004451 22 STQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFE--FVFTFLQQNVINDGK---FIN 96 (753)
Q Consensus 22 ~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~--~l~~~~~~~~~~~g~---~~~ 96 (753)
+++++||+||+.. ..|.|.+| ||++++|||+.+||+||++||||+++....+. .+..+.+.. +.+. -..
T Consensus 11 ~~~~~Llvk~~~~---~~g~W~fP-gG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~--~~~~~~~~~~ 84 (132)
T cd04661 11 DDTLVLLVQQKVG---SQNHWILP-QGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKY--PKAVRNEGIV 84 (132)
T ss_pred cCcEEEEEEeecC---CCCeeECC-cccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEec--CcccccccCc
Confidence 4678999998542 25899999 99999999999999999999999985431110 111222211 1110 011
Q ss_pred eEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004451 97 NEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 139 (753)
Q Consensus 97 ~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~ 139 (753)
+...++|.+...++. +.+ ..|+.+++|++++|+++++.
T Consensus 85 ~~~~~~f~~~~~~g~----~~~-~~e~~~~~W~~~~el~~~l~ 122 (132)
T cd04661 85 GAKVFFFKARYMSGQ----FEL-SQNQVDFKWLAKEELQKYLN 122 (132)
T ss_pred ccEEEEEEEEEecCc----ccc-CCCcceeEecCHHHHHhhcC
Confidence 245667777765432 122 26889999999999987653
No 71
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=1.6e-11 Score=114.86 Aligned_cols=108 Identities=17% Similarity=0.112 Sum_probs=73.3
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCC
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 92 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g 92 (753)
.+.++|++ ++++|||+||... ..+.|+|++| ||+++.||++.+|++||+.||||+++... ..++.+.+.. ++
T Consensus 6 ~~~~ii~~-~~~~vLl~~R~~~-~~~~g~w~~P-gg~ve~ge~~~~~~~RE~~EE~g~~~~~~--~~~~~~~h~~--~~- 77 (128)
T TIGR00586 6 IAVGIIRN-ENGEIIITRRADG-HMFAKLLEFP-GGKEEGGETPEQAVVRELEEEIGIPQHFS--EFEKLEYEFY--PR- 77 (128)
T ss_pred EEEEEEEC-CCCEEEEEEEeCC-CCCCCeEECC-CcccCCCCCHHHHHHHHHHHHHCCcceee--eEEEEEEEEC--CC-
Confidence 33444455 5679999999654 4688999999 99999999999999999999999986432 2344443322 11
Q ss_pred cccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 93 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 93 ~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
.+...++|.+...+.. +.+.+..++.|++++++.++
T Consensus 78 ---~~~~~~~~~~~~~~~~------~~~~~~~~~~W~~~~~l~~~ 113 (128)
T TIGR00586 78 ---HITLWFWLLERWEGGP------PGKEGQPEEWWVLVGLLADD 113 (128)
T ss_pred ---cEEEEEEEEEEEcCCC------cCcccccccEEeCHHHCCcc
Confidence 2334455555443221 11235677899999999764
No 72
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.32 E-value=3.1e-11 Score=121.34 Aligned_cols=115 Identities=22% Similarity=0.238 Sum_probs=83.8
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCC
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 92 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g 92 (753)
+|.++.++ ++++|||+|+... ...++.|++| ||.+++||++.+||+||++||||+.+ ..+..++.+... + +
T Consensus 49 ~v~v~~~~-~~~~vlLvrq~r~-~~~~~~~elP-aG~ve~gE~~~~aA~REl~EEtG~~~--~~l~~l~~~~~~---~-~ 119 (185)
T PRK11762 49 AVMIVPIL-DDDTLLLIREYAA-GTERYELGFP-KGLIDPGETPLEAANRELKEEVGFGA--RQLTFLKELSLA---P-S 119 (185)
T ss_pred EEEEEEEe-CCCEEEEEEeecC-CCCCcEEEcc-ceeCCCCCCHHHHHHHHHHHHHCCCC--cceEEEEEEecC---C-C
Confidence 45566566 5778998887543 3456789999 99999999999999999999999995 457777776532 1 1
Q ss_pred cccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcC
Q 004451 93 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 141 (753)
Q Consensus 93 ~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~ 141 (753)
.....+++|++...... ....++.|..++.|++++++.+++.++
T Consensus 120 --~~~~~~~~f~a~~~~~~---~~~~~e~E~i~~~~~~~~e~~~~~~~g 163 (185)
T PRK11762 120 --YFSSKMNIVLAEDLYPE---RLEGDEPEPLEVVRWPLADLDELLARP 163 (185)
T ss_pred --ccCcEEEEEEEEccccc---cCCCCCCceeEEEEEcHHHHHHHHHcC
Confidence 12346678888643221 123455677789999999999998854
No 73
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.32 E-value=1.6e-11 Score=123.47 Aligned_cols=121 Identities=15% Similarity=0.221 Sum_probs=85.3
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCC----CCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeee
Q 004451 12 RTVNAWIFAESTQELLLQRRADFKD----SWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQN 87 (753)
Q Consensus 12 ~aV~v~V~~~~~g~VLL~kRs~~k~----~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~ 87 (753)
-+|.+++++.++++|||.++-+... ..+..|++| ||++++||++++||+||++||||+.+ ..+..++.+..
T Consensus 45 ~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelP-aG~ve~gE~~~~aA~REl~EEtG~~~--~~~~~~~~~~~-- 119 (185)
T TIGR00052 45 NAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELS-AGMVEKGESPEDVARREAIEEAGYQV--KNLRKLLSFYS-- 119 (185)
T ss_pred CeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEEC-cEecCCCCCHHHHHHHHcccccccee--cceEEEEEEEc--
Confidence 3566777763457899887643221 136789999 99999999999999999999999995 35677766532
Q ss_pred ecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcC
Q 004451 88 VINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 141 (753)
Q Consensus 88 ~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~ 141 (753)
..+ ...+..++|++..............++|..+..|++++++.+++.++
T Consensus 120 --~~g--~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G 169 (185)
T TIGR00052 120 --SPG--GVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEG 169 (185)
T ss_pred --CCC--CCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcC
Confidence 122 24567889999865432111112234566678999999999998865
No 74
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.31 E-value=3.8e-11 Score=121.13 Aligned_cols=105 Identities=23% Similarity=0.228 Sum_probs=76.5
Q ss_pred CCCEEEEEEeCCCCCCCCCCeeecccccCCCC-CCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCCcccceEEE
Q 004451 22 STQELLLQRRADFKDSWPGMWDISSAGHISAG-DSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFA 100 (753)
Q Consensus 22 ~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~g-Es~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g~~~~~~i~ 100 (753)
.++.|||+||+...+.++|.|++| ||.+|++ |++.+||+||++||||++. ..+..++++...... .+ ...
T Consensus 42 ~~~~vLl~~R~~~~r~~~G~~~~P-GG~~e~~de~~~~tA~REl~EEtGl~~--~~~~~lg~l~~~~~~-~~-----~~~ 112 (190)
T PRK10707 42 PQPTLLLTQRSIHLRKHAGQVAFP-GGAVDPTDASLIATALREAQEEVAIPP--SAVEVIGVLPPVDSS-TG-----YQV 112 (190)
T ss_pred CCCEEEEEEeCCcccCCCCcEEcC-CcccCCCcccHHHHHHHHHHHHHCCCc--cceEEEEEeeeeecc-CC-----cEE
Confidence 345899999987766788999999 9999985 6899999999999999984 457778777532211 11 123
Q ss_pred EEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHH
Q 004451 101 DVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLL 138 (753)
Q Consensus 101 ~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~ 138 (753)
+.|++......+ ..++++|+.++.|++++++.++.
T Consensus 113 ~~~v~~~~~~~~---~~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 113 TPVVGIIPPDLP---YRANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred EEEEEEECCCCC---CCCChhhhheEEEEeHHHHhCcc
Confidence 334444333322 35677899999999999997753
No 75
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.28 E-value=3.3e-11 Score=112.98 Aligned_cols=69 Identities=23% Similarity=0.405 Sum_probs=50.8
Q ss_pred EEEEEEEecCCC--EEEEEEeCCC--CCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEE
Q 004451 13 TVNAWIFAESTQ--ELLLQRRADF--KDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTF 83 (753)
Q Consensus 13 aV~v~V~~~~~g--~VLL~kRs~~--k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~ 83 (753)
+.++++++.+++ +|||++|... .....|.|++| ||+++.||++.+||+||++||||+++. ..+..+..+
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lP-gG~ie~~E~~~~aA~REl~EEtGl~~~-~~~~~l~~~ 74 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIP-KGEYTEGEDPLLAAKREFSEETGFCVD-GPFIDLGSL 74 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECC-cccCCCCcCHHHHHHHHHHHHhCCcce-eeEEeEEEE
Confidence 456677654443 6899987332 12457899999 999999999999999999999999865 333334333
No 76
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.23 E-value=6.7e-11 Score=118.32 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=70.6
Q ss_pred EEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCce--------------EEEEEEEeeeecC
Q 004451 25 ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAF--------------EFVFTFLQQNVIN 90 (753)
Q Consensus 25 ~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L--------------~~l~~~~~~~~~~ 90 (753)
+||+.||.. +|.|.+| ||++++||++.+||.||+.||||+.+....+ ..+..|....+++
T Consensus 50 ~vLl~~r~~-----~g~walP-GG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~vy~~~~~dp 123 (186)
T cd03670 50 QFVAIKRPD-----SGEWAIP-GGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYVDDP 123 (186)
T ss_pred EEEEEEeCC-----CCcCcCC-eeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccEEEeccccCC
Confidence 678888843 4899999 9999999999999999999999765322111 1334454333434
Q ss_pred CCcccceEEEEEEEEEEeCCCCCcCccC-CccceeeEEEeCHHHHHhHHhcC
Q 004451 91 DGKFINNEFADVYLVTTLNPIPLEAFTL-QQTEVSAVKYIAYEEYKNLLAKD 141 (753)
Q Consensus 91 ~g~~~~~~i~~vy~a~~~~~~~~~~~~~-~~~Ev~e~~Wvs~~El~~l~~~~ 141 (753)
...-..+.++++|..............+ ..++..+++|+++++++.|.++|
T Consensus 124 r~td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L~~dH 175 (186)
T cd03670 124 RNTDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPLYANH 175 (186)
T ss_pred CCCCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEcccccccccCH
Confidence 3211124455555543321100000122 23578999999999999888887
No 77
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.20 E-value=4.1e-10 Score=109.74 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=84.0
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCC
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 92 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g 92 (753)
.|.++... ++++||.++.. ..|++| ||++++|||+.+||+||++||||+.+ ..+..++++.... +
T Consensus 26 ~V~ii~~~--~~~~LL~~~~~------~~~elP-gG~vE~gEt~~eaA~REl~EETG~~~--~~~~~lg~~~~~~----~ 90 (156)
T TIGR02705 26 HVLVIPRY--KDQWLLTEHKR------RGLEFP-GGKVEPGETSKEAAIREVMEETGAIV--KELHYIGQYEVEG----E 90 (156)
T ss_pred EEEEEEEE--CCEEEEEEEcC------CcEECC-ceecCCCCCHHHHHHHHHHHHhCcEe--eeeEEEEEEEecC----C
Confidence 34444444 46888887742 349999 99999999999999999999999985 4578888765421 1
Q ss_pred cccceEEEEEEEEEEeCCCCCcCccCCccceeeEE-EeCHHHHHhHHhcCCCCcccCCCCCchhHHHH
Q 004451 93 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVK-YIAYEEYKNLLAKDDPSFVPYDVNGGYGQLFN 159 (753)
Q Consensus 93 ~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~-Wvs~~El~~l~~~~~~~~~pw~~~~~~~~~f~ 159 (753)
......++|++..... . .. +|..+.. +++++++++++..++ .|+..+....+..+++
T Consensus 91 --~~~~~~~vf~A~~~~~-~-----~~-~e~~E~~~~~~~~~~~~~~~~g~-~~s~~~~d~~~~~~~~ 148 (156)
T TIGR02705 91 --STDFVKDVYFAEVSAL-E-----SK-DDYLETKGPVLLQEIPDIIKADP-RFSFIMKDDVLLKCLE 148 (156)
T ss_pred --CcEEEEEEEEEEEecc-c-----cC-CCceeeEeEEEHHHHHHHHhcCC-cccEEEchHHHHHHHH
Confidence 1467788999987532 1 11 4545555 799999999887653 5666555433333333
No 78
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.19 E-value=3.1e-10 Score=115.63 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=83.3
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCC----CCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeee
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDS----WPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNV 88 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~----~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~ 88 (753)
+|.++.++.++++|+|++.-+..-. .+-.|++| +|.+++||++.+||+|||.||||+.+ ..+..++++...
T Consensus 51 ~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~P-AG~vd~gE~p~~aA~REL~EETGy~a--~~~~~l~~~~~s-- 125 (202)
T PRK10729 51 AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMV-AGMIEEGESVEDVARREAIEEAGLIV--GRTKPVLSYLAS-- 125 (202)
T ss_pred eEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEcc-ceEcCCCCCHHHHHHHHHHHHhCcee--eEEEEEEEEEcC--
Confidence 5667767733568888765332211 13479999 99999999999999999999999995 456777665321
Q ss_pred cCCCcccceEEEEEEEEEEeCCCC-CcCccCCccceeeEEEeCHHHHHhHHhcC
Q 004451 89 INDGKFINNEFADVYLVTTLNPIP-LEAFTLQQTEVSAVKYIAYEEYKNLLAKD 141 (753)
Q Consensus 89 ~~~g~~~~~~i~~vy~a~~~~~~~-~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~ 141 (753)
+ | ...+.+++|++....... ......+++|..++.|++++++.+++.++
T Consensus 126 -p-g--~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G 175 (202)
T PRK10729 126 -P-G--GTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG 175 (202)
T ss_pred -C-C--cCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcC
Confidence 2 2 235678899998532111 11123455677789999999999999754
No 79
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.17 E-value=3.3e-10 Score=105.71 Aligned_cols=101 Identities=22% Similarity=0.245 Sum_probs=73.9
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCC
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 92 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g 92 (753)
+|.++++. ++++||.++. .+.|++| ||+++.||++.+||.||+.||||+.+ ..+..++.+..... +
T Consensus 2 ~v~vi~~~--~~~vLl~~~~------~~~w~lP-gG~ve~gE~~~~aa~REl~EE~G~~~--~~~~~l~~~~~~~~---~ 67 (118)
T cd04665 2 SVLVICFY--DDGLLLVRHK------DRGWEFP-GGHVEPGETIEEAARREVWEETGAEL--GSLTLVGYYQVDLF---E 67 (118)
T ss_pred EEEEEEEE--CCEEEEEEeC------CCEEECC-ccccCCCCCHHHHHHHHHHHHHCCcc--CceEEEEEEEecCC---C
Confidence 34555555 5789998874 2579999 99999999999999999999999996 45777877764321 1
Q ss_pred cccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHH
Q 004451 93 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEY 134 (753)
Q Consensus 93 ~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El 134 (753)
.+...++|.+....... .....|+....|++....
T Consensus 68 ---~~~~~~~y~a~~~~~~~----~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 68 ---SGFETLVYPAVSAQLEE----KASYLETDGPVLFKNEPE 102 (118)
T ss_pred ---CcEEEEEEEEEEEeccc----ccccccccCcEEeccCCc
Confidence 24567788887654322 223378999999986644
No 80
>PLN02709 nudix hydrolase
Probab=99.16 E-value=4.3e-10 Score=115.08 Aligned_cols=118 Identities=15% Similarity=0.181 Sum_probs=81.5
Q ss_pred CceEEEEEEEEec-----CCCEEEEEEeCCCCCCCCCCeeecccccCCCC-CCHHHHHHHHHHHHHCCccCCCceEEEEE
Q 004451 9 DYHRTVNAWIFAE-----STQELLLQRRADFKDSWPGMWDISSAGHISAG-DSSLISAQRELQEELGINLPKDAFEFVFT 82 (753)
Q Consensus 9 ~~h~aV~v~V~~~-----~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~g-Es~~~AA~REl~EEtGl~v~~~~L~~l~~ 82 (753)
..+-+|-+.++.. .+-.|||.+|+....+++|.|++| ||+++++ +++.+||+||+.||+|++.. .+..++.
T Consensus 31 ~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafP-GG~~e~~D~~~~~tAlRE~~EEiGl~~~--~v~vlg~ 107 (222)
T PLN02709 31 AKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALP-GGKRDEEDKDDIATALREAREEIGLDPS--LVTIISV 107 (222)
T ss_pred CCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCC-CcccCCCCCCHHHHHHHHHHHHHCCCch--heEEeee
Confidence 3456676666652 122899999998777899999999 9999997 47999999999999999853 3445555
Q ss_pred EEeeeecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHh
Q 004451 83 FLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 136 (753)
Q Consensus 83 ~~~~~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~ 136 (753)
...... +.+ ....-|++.+..... ..+.++++|++++.|++++++.+
T Consensus 108 L~~~~t-~sg-----~~V~P~V~~~~~~~~-~~~~~np~EV~~vf~vPL~~ll~ 154 (222)
T PLN02709 108 LEPFVN-KKG-----MSVAPVIGFLHDKKA-FKPLPNPAEVEEIFDVPLEMFLK 154 (222)
T ss_pred cCCeEC-CCC-----CEEEEEEEEecCCCC-ccccCChhhhheeEEecHHHHhC
Confidence 432211 112 133445554432111 12356788999999999999864
No 81
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.14 E-value=9.2e-10 Score=111.17 Aligned_cols=120 Identities=12% Similarity=0.172 Sum_probs=83.8
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCC-----CCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEee
Q 004451 12 RTVNAWIFAESTQELLLQRRADFKD-----SWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQ 86 (753)
Q Consensus 12 ~aV~v~V~~~~~g~VLL~kRs~~k~-----~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~ 86 (753)
-+|.+++++.++++|+|+|.-+.+. +.+-.|++| +|.+++| ++++||+|||.||||+.+ ..+..++++. .
T Consensus 46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElP-AG~vd~~-~p~~aA~REL~EETGy~a--~~~~~l~~~~-~ 120 (191)
T PRK15009 46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETC-AGLLDND-EPEVCIRKEAIEETGYEV--GEVRKLFELY-M 120 (191)
T ss_pred CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEe-ccccCCC-CHHHHHHHHHHHhhCCcc--ceEEEeeEEE-c
Confidence 3566777774467898887644331 133479998 9999976 699999999999999985 4577777663 2
Q ss_pred eecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcC
Q 004451 87 NVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 141 (753)
Q Consensus 87 ~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~ 141 (753)
+ + | ...+..++|++.............+++|..++.|++++|+.+++.++
T Consensus 121 s--p-G--~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G 170 (191)
T PRK15009 121 S--P-G--GVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTG 170 (191)
T ss_pred C--C-c--ccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcC
Confidence 1 2 2 24567899999863221111112345677889999999999999865
No 82
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.13 E-value=5.2e-10 Score=104.25 Aligned_cols=56 Identities=25% Similarity=0.321 Sum_probs=44.5
Q ss_pred EEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEE
Q 004451 25 ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTF 83 (753)
Q Consensus 25 ~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~ 83 (753)
.+||.+|+. .+.+|.|.+| ||++++||++.+||.||+.||||+++....+.++..+
T Consensus 16 ~~lL~~r~~--~~~~~~w~lP-gG~ve~~E~~~~aa~REl~EE~g~~~~~~~l~~~~~~ 71 (118)
T cd04674 16 GLLVIRRGI--EPGRGKLALP-GGFIELGETWQDAVARELLEETGVAVDPADIRLFDVR 71 (118)
T ss_pred CEEEEEeec--CCCCCeEECC-ceecCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEE
Confidence 466666654 3467999999 9999999999999999999999999754445555444
No 83
>PRK08999 hypothetical protein; Provisional
Probab=99.12 E-value=5.4e-10 Score=121.32 Aligned_cols=108 Identities=25% Similarity=0.341 Sum_probs=75.1
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCC
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 92 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g 92 (753)
.+.++|++ .+++|||+||... ..++|+|++| ||+++.||++.+|+.||++||||+.+.. ...+.+..+. +++.
T Consensus 7 ~~~~vi~~-~~~~vLL~kR~~~-~~~~g~w~~P-gG~ve~gE~~~~aa~RE~~EE~Gl~~~~--~~~l~~~~h~--~~~~ 79 (312)
T PRK08999 7 VAAGVIRD-ADGRILLARRPEG-KHQGGLWEFP-GGKVEPGETVEQALARELQEELGIEVTA--ARPLITVRHD--YPDK 79 (312)
T ss_pred EEEEEEEC-CCCeEEEEEecCC-CCCCCeEECC-ccCCCCCCCHHHHHHHHHHHHhCCceec--ceeEEEEEEE--cCCC
Confidence 34444556 5689999999654 4689999999 9999999999999999999999998643 3334443332 2221
Q ss_pred cccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 93 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 93 ~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
....++|.+..... .+...|..+++|++++++.++
T Consensus 80 ----~~~i~~y~~~~~~~------~~~~~e~~~~~Wv~~~el~~~ 114 (312)
T PRK08999 80 ----RVRLDVRRVTAWQG------EPHGREGQPLAWVAPDELAVY 114 (312)
T ss_pred ----eEEEEEEEEEEecC------cccCccCCccEEecHHHcccC
Confidence 23456666654322 123456788999999999653
No 84
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.03 E-value=2.7e-10 Score=118.92 Aligned_cols=108 Identities=20% Similarity=0.326 Sum_probs=80.9
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCC
Q 004451 12 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 91 (753)
Q Consensus 12 ~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~ 91 (753)
.+|-+.|.+ ++++||.++.. .++|++..- +|+|++|||+++|+.||+.||+|+++. +++++++-.. ++|
T Consensus 145 P~vIv~v~~--~~~ilLa~~~~---h~~g~yS~L-AGFVE~GETlE~AV~REv~EE~Gi~V~--~vrY~~SQPW--PfP- 213 (279)
T COG2816 145 PCVIVAVIR--GDEILLARHPR---HFPGMYSLL-AGFVEPGETLEQAVAREVFEEVGIKVK--NVRYVGSQPW--PFP- 213 (279)
T ss_pred CeEEEEEec--CCceeecCCCC---CCCcceeee-eecccCCccHHHHHHHHHHHhhCeEEe--eeeEEeccCC--CCc-
Confidence 455555655 45688887754 358999997 999999999999999999999999964 4666655443 334
Q ss_pred CcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004451 92 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 139 (753)
Q Consensus 92 g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~ 139 (753)
+.++.-|++..+++ +++++..|.++++||+.+|+..++.
T Consensus 214 -----~SLMigf~aey~sg----eI~~d~~Eleda~WFs~~evl~~L~ 252 (279)
T COG2816 214 -----HSLMLGFMAEYDSG----EITPDEGELEDARWFSRDEVLPALP 252 (279)
T ss_pred -----hhhhhhheeeeccc----cccCCcchhhhccccCHhHHhhhcC
Confidence 34566688876543 3688888999999999999554443
No 85
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=98.82 E-value=4.8e-09 Score=105.76 Aligned_cols=161 Identities=16% Similarity=0.135 Sum_probs=122.0
Q ss_pred EEecCCC--EEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCcc-CCCceEEEEEEEeeeecCCCcc
Q 004451 18 IFAESTQ--ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINL-PKDAFEFVFTFLQQNVINDGKF 94 (753)
Q Consensus 18 V~~~~~g--~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v-~~~~L~~l~~~~~~~~~~~g~~ 94 (753)
|.++..+ .++++||+.+|..|||+|++.+||++..|-.+.++|+.|..||+.++. ....+...|+.+|-. +....+
T Consensus 140 V~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~-~esr~~ 218 (306)
T KOG4313|consen 140 VRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYK-FESRQG 218 (306)
T ss_pred ecCCCcCceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEe-eehhhc
Confidence 3443334 689999999999999999999999999999999999999999999985 234677888877652 122223
Q ss_pred cceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcCCCCcccCCCCCchhHHHHHHHHH-hhhhhhhhh
Q 004451 95 INNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYDVNGGYGQLFNIISQR-YKENTMERS 173 (753)
Q Consensus 95 ~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~~~~~~pw~~~~~~~~~f~~i~~~-~~~~~~~~~ 173 (753)
...+..+||.+.++.++- .+.+++|++.+..+++++..+.++ ...|+|.|.. .+.++++++ +..-....+
T Consensus 219 ~~pe~qYVfDL~l~~d~i---P~~nDGEV~~F~Lltl~~~v~~l~--~k~FKpncAl----V~iDflirHg~itp~~p~y 289 (306)
T KOG4313|consen 219 LFPETQYVFDLELPLDFI---PQNNDGEVQAFELLTLKDCVERLF--TKDFKPNCAL----VVIDFLIRHGTITPQHPQY 289 (306)
T ss_pred cCccceEEEeccCchhhc---CCCCCCceeeEeeecHHHHHHHHH--hhccCCCcce----EEEEEeecceecCCCChhH
Confidence 456788999997654432 256778999999999999988887 5679999875 444555553 212255677
Q ss_pred HHHHHHHhhhhcccc
Q 004451 174 LTLQKQLRRYAHVSL 188 (753)
Q Consensus 174 lell~r~~~~~pv~~ 188 (753)
++.+.+.++..|++.
T Consensus 290 l~~l~rihr~lp~p~ 304 (306)
T KOG4313|consen 290 LQTLERIHRPLPVPV 304 (306)
T ss_pred HHHHHhccccCCcCC
Confidence 888888888888765
No 86
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.79 E-value=7.2e-08 Score=90.82 Aligned_cols=51 Identities=29% Similarity=0.377 Sum_probs=39.4
Q ss_pred EEEEEEecCCC--EEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCcc
Q 004451 14 VNAWIFAESTQ--ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINL 72 (753)
Q Consensus 14 V~v~V~~~~~g--~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v 72 (753)
+.+++.+ +++ +||+.|+.. +.|.+| ||++++||++.+||+||++||||+.+
T Consensus 3 ~~~~~~~-~~~~~~ll~~r~~~------~~~~lP-gG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 3 CPAVLRR-NGEVLELLVFEHPL------AGFQIV-KGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEe-CCceEEEEEEEcCC------CcEECC-CccCCCCCCHHHHHHHHHHHHHCCee
Confidence 4455554 343 666665422 459999 99999999999999999999999985
No 87
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.77 E-value=5.1e-08 Score=91.34 Aligned_cols=119 Identities=21% Similarity=0.385 Sum_probs=68.3
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHH-HHHHHHHHHHCCccCCCceEEEEEEEeeeecCC
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLI-SAQRELQEELGINLPKDAFEFVFTFLQQNVIND 91 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~-AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~ 91 (753)
++.+++.....++||+.+|.... +.|.+| ||++++||++.+ ||+||+.||||+++....+..++.+........
T Consensus 13 ~~~~~~~~~~~~~vl~~~~~~~~----~~~~~P-gG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~ 87 (161)
T COG0494 13 AVAVLVGRDGPGEVLLAQRRDDG----GLWELP-GGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGS 87 (161)
T ss_pred eEEEEEecCCCCEEeEEEccccC----CceecC-CcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcc
Confidence 44444444122789999886532 699999 999999999988 999999999999965323444554432211110
Q ss_pred CcccceEEEEEEEEEEeCCCCCcCccCC---ccceeeEEEeCHHHHHhHH
Q 004451 92 GKFINNEFADVYLVTTLNPIPLEAFTLQ---QTEVSAVKYIAYEEYKNLL 138 (753)
Q Consensus 92 g~~~~~~i~~vy~a~~~~~~~~~~~~~~---~~Ev~e~~Wvs~~El~~l~ 138 (753)
. ........+............+... ..|...+.|++++++....
T Consensus 88 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 135 (161)
T COG0494 88 S--VGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALV 135 (161)
T ss_pred c--ccceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHccccc
Confidence 0 0001111111111111111111111 2578889999999886543
No 88
>PLN03143 nudix hydrolase; Provisional
Probab=98.72 E-value=1.5e-07 Score=100.36 Aligned_cols=123 Identities=20% Similarity=0.186 Sum_probs=76.7
Q ss_pred EEEEEEE-ecCCCE--EEEEEeCCCCCCCCCCeeecccccCCCC-CCHHHHHHHHHHHHHCCccCCCceEEEEEEE----
Q 004451 13 TVNAWIF-AESTQE--LLLQRRADFKDSWPGMWDISSAGHISAG-DSSLISAQRELQEELGINLPKDAFEFVFTFL---- 84 (753)
Q Consensus 13 aV~v~V~-~~~~g~--VLL~kRs~~k~~~pG~W~lP~GG~Ve~g-Es~~~AA~REl~EEtGl~v~~~~L~~l~~~~---- 84 (753)
+|.+++. + ++++ |+|+++.+.+ ...-.|++| ||.+|++ |++.+||+||++||||+.+....+..+..+.
T Consensus 130 aVaVL~~l~-~~ge~~VlLVrQ~R~p-vg~~~lE~P-AG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~ 206 (291)
T PLN03143 130 AVAVLILLE-SEGETYAVLTEQVRVP-VGKFVLELP-AGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPST 206 (291)
T ss_pred eEEEEEEEe-CCCCEEEEEEEeEecC-CCcEEEEec-ccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCc
Confidence 5555554 4 3444 8887775432 233489999 9999974 8999999999999999986545566654211
Q ss_pred --eeeecCCCcccceEEEEEEEEEEeCCC-------CCcCccCCccceeeEEEeCHHHHHhHHhcC
Q 004451 85 --QQNVINDGKFINNEFADVYLVTTLNPI-------PLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 141 (753)
Q Consensus 85 --~~~~~~~g~~~~~~i~~vy~a~~~~~~-------~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~ 141 (753)
.....++ ...+..++|++...... ....-..+++|..++.|++++++..++.|.
T Consensus 207 g~~v~pspG---~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~ 269 (291)
T PLN03143 207 GCRMFPSPG---GCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADA 269 (291)
T ss_pred CceEEecCC---ccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhH
Confidence 1111122 23345667776542111 000012345677889999999998877543
No 89
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=98.68 E-value=1.8e-08 Score=105.58 Aligned_cols=111 Identities=22% Similarity=0.307 Sum_probs=69.3
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeee-cC
Q 004451 12 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNV-IN 90 (753)
Q Consensus 12 ~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~-~~ 90 (753)
.+|-.+|++ .+++.+|..|.. +..+|+|+.+ +|++++|||+++||+||++||||+++.. +..+.+ .+.+ .+
T Consensus 188 PvVIm~li~-~d~~~~LL~R~~--r~~~gl~t~l-AGFlEpGES~eeav~REtwEEtGi~V~~--I~~~as--QPWP~~p 259 (345)
T KOG3084|consen 188 PVVIMLLID-HDGKHALLGRQK--RYPPGLWTCL-AGFLEPGESIEEAVRRETWEETGIEVEV--ISYVAS--QPWPLMP 259 (345)
T ss_pred CeEEEEEEc-CCCCEeeeeccc--CCCCchhhhh-hccCCccccHHHHHHHHHHHHhCceeee--Eeeeec--CCCCCCc
Confidence 345555567 455444444533 5668999998 9999999999999999999999999643 222221 1111 11
Q ss_pred CCcccceEEEEEEEEEEeCCCCCcCccCCcc-ceeeEEEeCHHHHHhHHh
Q 004451 91 DGKFINNEFADVYLVTTLNPIPLEAFTLQQT-EVSAVKYIAYEEYKNLLA 139 (753)
Q Consensus 91 ~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~-Ev~e~~Wvs~~El~~l~~ 139 (753)
.. .+..+++- .... ..+..+.+ |.++++||+-+|+.+.+.
T Consensus 260 ~S------LMIgc~al--a~~~-~~I~vd~dlEleDaqwF~r~ev~~aL~ 300 (345)
T KOG3084|consen 260 QS------LMIGCLAL--AKLN-GKISVDKDLELEDAQWFDREEVKSALT 300 (345)
T ss_pred hH------HHHHHHHH--HhhC-CccccCcchhhhhcccccHHHHHHHHH
Confidence 11 11111110 0111 23455655 899999999999988665
No 90
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.65 E-value=1.6e-07 Score=88.49 Aligned_cols=117 Identities=15% Similarity=0.204 Sum_probs=74.9
Q ss_pred ceEEEEEEEEecCCC--EEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEE-ee
Q 004451 10 YHRTVNAWIFAESTQ--ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFL-QQ 86 (753)
Q Consensus 10 ~h~aV~v~V~~~~~g--~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~-~~ 86 (753)
+...++|+.+..++. +|||+.-+.. +..|.+| +|+++++|+..+||+||..||.|+.-.. ...++.+. +.
T Consensus 8 ~r~vagCi~~r~~~~~ieVLlvsSs~~----~~~wi~P-KGGwE~dE~~~eAA~REt~EEAGv~G~l--~~~~~g~~~~~ 80 (145)
T KOG2839|consen 8 FRLVAGCICYRSDKEKIEVLLVSSSKK----PHRWIVP-KGGWEPDESVEEAALRETWEEAGVKGKL--GRLLGGFEDFL 80 (145)
T ss_pred cEEEEEeeeeeecCcceEEEEEecCCC----CCCccCC-CCCCCCCCCHHHHHHHHHHHHhCceeee--eccccchhhcc
Confidence 466777777775555 7899866542 4679999 9999999999999999999999998322 22234443 22
Q ss_pred eecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHh
Q 004451 87 NVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 139 (753)
Q Consensus 87 ~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~ 139 (753)
+... . ...-.++|...+..... ...-...|..+.+|+.++|..+++.
T Consensus 81 ~~~~-~---~~~k~~~~~l~v~e~le--~wp~~~~~~r~r~W~~ledA~~~~~ 127 (145)
T KOG2839|consen 81 SKKH-R---TKPKGVMYVLAVTEELE--DWPESEHEFREREWLKLEDAIELCQ 127 (145)
T ss_pred Chhh-c---ccccceeehhhhhhhcc--cChhhhcccceeEEeeHHHHHHHHh
Confidence 2111 1 12234456554322221 0011123578899999999988876
No 91
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.58 E-value=2.4e-07 Score=93.74 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=76.0
Q ss_pred eEEEEEEEEecCCC--EEEEEEeCCCCCCCCCCeeecccccCCCCC-CHHHHHHHHHHHHHCCccCCCceEEEEEEEeee
Q 004451 11 HRTVNAWIFAESTQ--ELLLQRRADFKDSWPGMWDISSAGHISAGD-SSLISAQRELQEELGINLPKDAFEFVFTFLQQN 87 (753)
Q Consensus 11 h~aV~v~V~~~~~g--~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gE-s~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~ 87 (753)
.-+|-+.+++..++ +|||+||+.+-+.++|.-.+| ||..++.+ +-..+|.||..||.|++.. .+..++......
T Consensus 43 ~~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fP-GG~~d~~D~s~~~tAlREt~EEIGl~~~--~~~~~g~l~~~~ 119 (246)
T KOG3069|consen 43 KAAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFP-GGRRDPHDKSDIQTALRETEEEIGLDPE--LVDVLGALPPFV 119 (246)
T ss_pred CccEEEEEEEcCCCceEEEEEeccccccccCCceeCC-CCcCCccccchHHHHHHHHHHHhCCCHH--Hhhhhhhcccee
Confidence 44566666663233 899999999999999999999 99999875 6778999999999999942 233333322111
Q ss_pred ecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHh
Q 004451 88 VINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 136 (753)
Q Consensus 88 ~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~ 136 (753)
. ..+.-....+..+..-.+ . ....++++|+.++.|+|++++..
T Consensus 120 ~-r~~~~v~p~v~~l~~~~~---l--~~~~ln~gEv~~~F~VPL~~ll~ 162 (246)
T KOG3069|consen 120 L-RSGWSVFPVVGFLSDKKI---L--PSLRLNSGEVESAFWVPLTDLLL 162 (246)
T ss_pred e-ccCcccceeEEEEecccc---c--ccccCCchheeeeeeeeHHHHhh
Confidence 1 111001111211111111 0 23478889999999999999853
No 92
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.44 E-value=3.4e-06 Score=77.36 Aligned_cols=100 Identities=15% Similarity=0.212 Sum_probs=66.3
Q ss_pred EEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCCcc
Q 004451 15 NAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKF 94 (753)
Q Consensus 15 ~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g~~ 94 (753)
.++|+. +++++||+||. .+..++|+|++| ||.++.+|+..++..|++.++.++. ...++.+.+.. ++
T Consensus 6 ~~~ii~-~~~~~ll~kR~-~~gl~~glwefP-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~H~f--th--- 72 (118)
T cd03431 6 AVVVIR-NDGRVLLEKRP-EKGLLAGLWEFP-SVEWEEEADGEEALLSALKKALRLS-----LEPLGTVKHTF--TH--- 72 (118)
T ss_pred EEEEEe-cCCeEEEEECC-CCCCCCcceeCC-CccccCCcCHHHHHHHHHHHHhCcc-----cccceeEEEec--CC---
Confidence 334444 46899999995 457899999999 9999999999999999999987641 11233333322 11
Q ss_pred cceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 95 INNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 95 ~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
.+...++|.+...... .+..+++|++++++.++
T Consensus 73 -~~~~~~~~~~~~~~~~---------~~~~~~~W~~~eel~~~ 105 (118)
T cd03431 73 -FRLTLHVYLARLEGDL---------LAPDEGRWVPLEELDEY 105 (118)
T ss_pred -eEEEEEEEEEEEeCCC---------cCccccEEccHHHHhhC
Confidence 1234456666543210 24467899999999764
No 93
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.41 E-value=1.8e-07 Score=98.56 Aligned_cols=120 Identities=23% Similarity=0.351 Sum_probs=81.8
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCC
Q 004451 12 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 91 (753)
Q Consensus 12 ~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~ 91 (753)
..|+.+|+| .+++||+++-........|.|.+| +|.|+++|++.++|+||++||||++... ..+..+... ++
T Consensus 116 vgvg~~V~n-~~~eVlVv~e~d~~~~~~~~wK~p-tG~v~~~e~i~~gavrEvkeetgid~ef---~eVla~r~~---H~ 187 (295)
T KOG0648|consen 116 VGVGAFVLN-KKKEVLVVQEKDGAVKIRGGWKLP-TGRVEEGEDIWHGAVREVKEETGIDTEF---VEVLAFRRA---HN 187 (295)
T ss_pred eeeeeeEec-CCceeEEEEecccceeeccccccc-ceEecccccchhhhhhhhHHHhCcchhh---hhHHHHHhh---hc
Confidence 568999999 457999986545555678999999 9999999999999999999999997432 233333221 11
Q ss_pred CcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhHHhcC
Q 004451 92 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 141 (753)
Q Consensus 92 g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l~~~~ 141 (753)
.. ......++|......+. ..++..+..|+..+.||++++.......|
T Consensus 188 ~~-~~~~ksd~f~~c~L~p~-s~~i~~~~~ei~~~~Wmp~~e~v~qp~~~ 235 (295)
T KOG0648|consen 188 AT-FGLIKSDMFFTCELRPR-SLDITKCKREIEAAAWMPIEEYVSQPLVH 235 (295)
T ss_pred ch-hhcccccceeEEEeecc-ccccchhHHHHHHHhcccHHHhhcccccc
Confidence 11 11223344544433332 23456666789999999999887654433
No 94
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=98.26 E-value=1.4e-05 Score=78.91 Aligned_cols=111 Identities=23% Similarity=0.117 Sum_probs=67.4
Q ss_pred CCC--EEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCCcccceEE
Q 004451 22 STQ--ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 99 (753)
Q Consensus 22 ~~g--~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g~~~~~~i 99 (753)
.+| .|+|+|.-+ +....=+.++| +|.++.||+++.||+|||+||||+.-.. .......|- +| |--.....
T Consensus 84 ~dG~~~ivL~kQfR-pP~Gk~ciElP-AGLiD~ge~~~~aAiREl~EEtGy~gkv-~~~s~~~f~----DP-Gltn~~~~ 155 (225)
T KOG3041|consen 84 SDGKPYIVLVKQFR-PPTGKICIELP-AGLIDDGEDFEGAAIRELEEETGYKGKV-DMVSPTVFL----DP-GLTNCNLC 155 (225)
T ss_pred cCCcEEEEEEEeec-CCCCcEEEEcc-cccccCCCchHHHHHHHHHHHhCcccee-eeccccEEc----CC-CCCCCceE
Confidence 456 577776633 22333488999 9999999999999999999999997221 112222221 12 21122233
Q ss_pred EEEEEEEEeCCCCCcC-ccCCccceeeEEEeCHHHHHhHHhc
Q 004451 100 ADVYLVTTLNPIPLEA-FTLQQTEVSAVKYIAYEEYKNLLAK 140 (753)
Q Consensus 100 ~~vy~a~~~~~~~~~~-~~~~~~Ev~e~~Wvs~~El~~l~~~ 140 (753)
..++.+..+.+.+..+ ..+++.|.-++.-++..+|.+.+.+
T Consensus 156 iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~~ 197 (225)
T KOG3041|consen 156 IVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRELAD 197 (225)
T ss_pred EEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHHHh
Confidence 3344443322222111 2356679999999999999876653
No 95
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=97.79 E-value=0.00028 Score=65.02 Aligned_cols=119 Identities=19% Similarity=0.368 Sum_probs=70.5
Q ss_pred eEEEEEEEEecCCC--EEEEEEeCCCCCCC----CCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEE
Q 004451 11 HRTVNAWIFAESTQ--ELLLQRRADFKDSW----PGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFL 84 (753)
Q Consensus 11 h~aV~v~V~~~~~g--~VLL~kRs~~k~~~----pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~ 84 (753)
.++.+++++....| .|||.+- ....| .|.|.+| -|....||.+..||+||..||+||.++ ..+..++...
T Consensus 3 K~SAGvLlYR~~aG~v~VLLvHP--GGPFWa~kD~GAWSIP-KGey~~gEdp~~AArREf~EE~Gi~vd-GP~~~lG~~k 78 (161)
T COG4119 3 KLSAGVLLYRARAGVVDVLLVHP--GGPFWAGKDDGAWSIP-KGEYTGGEDPWLAARREFSEEIGICVD-GPRIDLGSLK 78 (161)
T ss_pred cccceeEEEEecCCCEEEEEecC--CCCccccCCCCccccc-ccccCCCcCHHHHHHHHhhhhhceeec-Cchhhhhhhc
Confidence 45667777764455 4555532 22222 4799999 999999999999999999999999873 2233333332
Q ss_pred eeeecCCCcc-----------cceEEEEEEEEEEeCCCCCcCccCC-ccceeeEEEeCHHHHHhHHhcC
Q 004451 85 QQNVINDGKF-----------INNEFADVYLVTTLNPIPLEAFTLQ-QTEVSAVKYIAYEEYKNLLAKD 141 (753)
Q Consensus 85 ~~~~~~~g~~-----------~~~~i~~vy~a~~~~~~~~~~~~~~-~~Ev~e~~Wvs~~El~~l~~~~ 141 (753)
. ++|.. .....+.+|-... ++..-... -.|++.+.||++.+....+..+
T Consensus 79 Q----~GGKvVta~~veae~Dva~~rSntFe~eW----PprSG~M~~FPEVDRagWF~l~eAr~Kil~g 139 (161)
T COG4119 79 Q----SGGKVVTAFGVEAELDVADARSNTFELEW----PPRSGKMRKFPEVDRAGWFPLAEARTKILKG 139 (161)
T ss_pred c----CCCcEEEEEeeeeeeehhhhhcceeeeec----CCCCCccccCcccccccceecHHHHhHHhhc
Confidence 1 11100 0001112233322 11111111 2489999999999998776644
No 96
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=97.45 E-value=0.0002 Score=65.99 Aligned_cols=102 Identities=21% Similarity=0.271 Sum_probs=56.2
Q ss_pred EEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCCccc
Q 004451 16 AWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFI 95 (753)
Q Consensus 16 v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g~~~ 95 (753)
+++++ ++|++||+||. .+..+.|+|++| .--.+ +++..+.+.+.+.+..|+.+.. ...++++.+.. .+
T Consensus 2 ~~i~~-~~~~~Ll~kRp-~~gll~GLwefP-~~e~~-~~~~~~~l~~~~~~~~~~~~~~--~~~~~~v~H~f--SH---- 69 (114)
T PF14815_consen 2 LLIIR-SQGRVLLEKRP-EKGLLAGLWEFP-LIESD-EEDDEEELEEWLEEQLGLSIRS--VEPLGTVKHVF--SH---- 69 (114)
T ss_dssp EEEEE-TTSEEEEEE---SSSTTTT-EE---EEE-S-SS-CHHHHHHHTCCSSS-EEEE---S-SEEEEEE---SS----
T ss_pred EEEEE-eCCEEEEEECC-CCChhhcCcccC-EeCcc-CCCCHHHHHHHHHHHcCCChhh--heecCcEEEEc--cc----
Confidence 45666 78999999994 567899999999 65555 3333555555566667776432 22445554433 11
Q ss_pred ceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHhH
Q 004451 96 NNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 137 (753)
Q Consensus 96 ~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~l 137 (753)
.+...++|.+.+..... .+..+.+|++.+++.++
T Consensus 70 ~~~~~~~~~~~~~~~~~--------~~~~~~~W~~~~~l~~~ 103 (114)
T PF14815_consen 70 RRWTIHVYEVEVSADPP--------AEPEEGQWVSLEELDQY 103 (114)
T ss_dssp EEEEEEEEEEEEE-SS------------TTEEEEEGGGGGGS
T ss_pred eEEEEEEEEEEecCCCC--------CCCCCcEEEEHHHHhhC
Confidence 24455778887654321 13568999999999653
No 97
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=96.28 E-value=0.037 Score=53.43 Aligned_cols=115 Identities=18% Similarity=0.277 Sum_probs=67.2
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCC--CCCCCCeeecccccCCCCC--CHHH-----HHHHHHHHHHCCccCC-CceEEEE
Q 004451 12 RTVNAWIFAESTQELLLQRRADFK--DSWPGMWDISSAGHISAGD--SSLI-----SAQRELQEELGINLPK-DAFEFVF 81 (753)
Q Consensus 12 ~aV~v~V~~~~~g~VLL~kRs~~k--~~~pG~W~lP~GG~Ve~gE--s~~~-----AA~REl~EEtGl~v~~-~~L~~l~ 81 (753)
..-.|+|.+ +++||+.+|-... ....|.+.+-+|||+..++ ++.+ .+.|||.||.++.-.. ..+..++
T Consensus 62 ~IpYvvi~~--edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lG 139 (203)
T COG4112 62 VIPYVVIMD--EDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLG 139 (203)
T ss_pred cccEEEEec--CCEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeee
Confidence 344566655 5699999995432 1234788888899998765 2222 3779999999997321 2355555
Q ss_pred EEEeeeecCCCcccceEEEEEEEEEEeCCCCCcCccCCccceeeEEEeCHHHHHh
Q 004451 82 TFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 136 (753)
Q Consensus 82 ~~~~~~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~Ev~e~~Wvs~~El~~ 136 (753)
-+. .+.+. .+.-.+-.+|..+.. ..++.....+.-+++|+.+.+|.+
T Consensus 140 lIN---dd~ne-VgkVHiG~lf~~~~k----~ndvevKEkd~~~~kwik~~ele~ 186 (203)
T COG4112 140 LIN---DDTNE-VGKVHIGALFLGRGK----FNDVEVKEKDLFEWKWIKLEELEK 186 (203)
T ss_pred eec---CCCcc-cceEEEEEEEEeecc----ccceeeeecceeeeeeeeHHHHHH
Confidence 432 22211 111123345555421 112223345667899999999976
No 98
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=95.26 E-value=0.019 Score=57.97 Aligned_cols=38 Identities=32% Similarity=0.627 Sum_probs=32.5
Q ss_pred EEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHH
Q 004451 25 ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEEL 68 (753)
Q Consensus 25 ~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEt 68 (753)
+++.+||.. .|.|++| ||.|++||-+-.+.+||+.||.
T Consensus 140 e~vavkr~d-----~~~WAiP-GGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 140 EFVAVKRPD-----NGEWAIP-GGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred EEEEEecCC-----CCcccCC-CCcCCchhhhhHHHHHHHHHHH
Confidence 345667744 5889999 9999999999999999999995
No 99
>COG4227 Antirestriction protein [DNA replication, recombination, and repair]
Probab=92.71 E-value=0.12 Score=53.73 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=46.5
Q ss_pred ccchhhhhhhcccCcCCCCcccCCcccccccchhhcccchHHhHHHHHHHHHHHHHHHhCCCCCchhhhHHHH
Q 004451 566 SFFTHNICHECCHGIGPHSITLPDGRQSTVRLELQELHSAMEEAKADIVGLWALKFLIGRDLLPKSLVKSMYV 638 (753)
Q Consensus 566 ~~~~~v~lHElgHgsGk~~~~~~~g~~~t~~~~f~~~~s~~EEcRAe~vglyl~~~ll~~g~~~~~~~~~~y~ 638 (753)
..+.-|++|||||-+|--..+. .+.+..|+.-.-+.||.+||+.++++| .++|+.+..-+.+.|+
T Consensus 201 ~~yyaTl~HElghwtgh~~rl~-----rdLs~~~~sr~yA~eel~aEi~a~~~c---~~lgi~p~~~~haayi 265 (316)
T COG4227 201 INYYATLLHELGHWTGHEARLD-----RDLSRAFGSREYAFEELVAEIGAAFLC---ATLGIVPTVRDHAAYI 265 (316)
T ss_pred HhHHHHHHHHhccccCchhhhh-----hhhccccchhHHHHHHHHHHHhhhhee---cccccCCchhhHHHHH
Confidence 4456899999999999633221 234456777778999999999999999 4458765544455555
No 100
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=92.18 E-value=0.41 Score=50.66 Aligned_cols=95 Identities=19% Similarity=0.161 Sum_probs=63.5
Q ss_pred eeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCcCccCCcc
Q 004451 42 WDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQT 121 (753)
Q Consensus 42 W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~ 121 (753)
.++ |||.|+..-|+.+-|..|+.||+|.+++++.|..+.+|..-..-. -...+.|++.+..... .....
T Consensus 81 iel-c~g~idke~s~~eia~eev~eecgy~v~~d~l~hv~~~~~g~~~s------~sa~~l~y~ei~es~k----is~gg 149 (405)
T KOG4432|consen 81 IEL-CAGLIDKELSPREIASEEVAEECGYRVDPDDLIHVITFVVGAHQS------GSAQHLYYAEIDESMK----ISEGG 149 (405)
T ss_pred eee-eccccccccCHHHHhHHHHHHHhCCcCChhHceEEEEEEeccccC------ccchheeeeecchhhc----cccCC
Confidence 456 599999999999999999999999999999999999886533211 2356889997654322 11112
Q ss_pred ----ceeeEEEeCHHHHHhHHhcCCCCccc
Q 004451 122 ----EVSAVKYIAYEEYKNLLAKDDPSFVP 147 (753)
Q Consensus 122 ----Ev~e~~Wvs~~El~~l~~~~~~~~~p 147 (753)
++-..-=++.++.+.++..|.+.--|
T Consensus 150 gv~~~~~~~~~~a~e~ar~~i~t~a~~~g~ 179 (405)
T KOG4432|consen 150 GVITKVYYPVNVAREIARPAIGTHAEVKGP 179 (405)
T ss_pred ceeeEEEEeehhhHHHHHHhhccCccccCC
Confidence 22222235556666667666554434
No 101
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=91.48 E-value=1.2 Score=47.35 Aligned_cols=96 Identities=21% Similarity=0.297 Sum_probs=62.5
Q ss_pred eeecccccCCCCCCHHHHHHHHHHHHHCCccCCCceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCC--CcCccCC
Q 004451 42 WDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIP--LEAFTLQ 119 (753)
Q Consensus 42 W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~~~~L~~l~~~~~~~~~~~g~~~~~~i~~vy~a~~~~~~~--~~~~~~~ 119 (753)
.++ |.|.|+..-+..+-|.||..||+|.++..+.++.+..+..- -|. .+ ....+|++.+...-. +..-..+
T Consensus 286 lEL-cag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~sG----VG~-SG-~~QTmfy~eVTdA~rsgpGgg~~e 358 (405)
T KOG4432|consen 286 LEL-CAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKYISG----VGQ-SG-DTQTMFYVEVTDARRSGPGGGEKE 358 (405)
T ss_pred eee-ecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhheeecc----cCC-cC-CeeEEEEEEeehhhccCCCCCccc
Confidence 445 47889888899999999999999999887777666554311 111 11 123567776532110 0111233
Q ss_pred ccceeeEEEeCHHHHHhHHhcCCCC
Q 004451 120 QTEVSAVKYIAYEEYKNLLAKDDPS 144 (753)
Q Consensus 120 ~~Ev~e~~Wvs~~El~~l~~~~~~~ 144 (753)
++|.-+.--+++++++.+..+|+..
T Consensus 359 e~E~IEvv~lsle~a~~~~~q~~I~ 383 (405)
T KOG4432|consen 359 EDEDIEVVRLSLEDAPSLYRQHNIG 383 (405)
T ss_pred ccceeeEEEechhhhhHHHhccCCC
Confidence 4566677789999999999887543
No 102
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=91.21 E-value=1 Score=45.35 Aligned_cols=58 Identities=16% Similarity=0.302 Sum_probs=37.9
Q ss_pred cCCceEEEEEEEEecCCC--EEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCcc
Q 004451 7 VGDYHRTVNAWIFAESTQ--ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINL 72 (753)
Q Consensus 7 ~g~~h~aV~v~V~~~~~g--~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v 72 (753)
.|+++.+-+++++. ..+ .|||.|... ..|.+| ||.+.+||+..++..|.|.+-.|..-
T Consensus 40 ~GmRrsVe~Vllvh-~h~~PHvLLLq~~~------~~fkLP-Gg~l~~gE~e~~gLkrkL~~~l~~~~ 99 (188)
T PF13869_consen 40 EGMRRSVEGVLLVH-EHGHPHVLLLQIGN------TFFKLP-GGRLRPGEDEIEGLKRKLTEKLSPED 99 (188)
T ss_dssp HSSEEEEEEEEEEE-ETTEEEEEEEEETT------TEEE-S-EEE--TT--HHHHHHHHHHHHHB-SS
T ss_pred hCCceEEEEEEEEe-cCCCcEEEEEeccC------ccccCC-ccEeCCCCChhHHHHHHHHHHcCCCc
Confidence 56644444455555 444 577777643 369999 99999999999999999999999873
No 103
>PRK10880 adenine DNA glycosylase; Provisional
Probab=89.88 E-value=1.5 Score=48.73 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=33.4
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCc
Q 004451 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGIN 71 (753)
Q Consensus 11 h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~ 71 (753)
.+...++|+. +++++||.||.. +..+.|+|++| +. +.. + ..++..|+.|+.
T Consensus 230 ~~~~~~~~~~-~~~~~~l~~r~~-~gl~~gl~~fP-~~--~~~----~-~~~~~~~~~~~~ 280 (350)
T PRK10880 230 ERTGYFLLLQ-HGDEVWLEQRPP-SGLWGGLFCFP-QF--ADE----E-ELRQWLAQRGIA 280 (350)
T ss_pred eEEEEEEEEE-ECCEEEEEECCc-cChhhccccCC-CC--cch----h-hHHHHHHhcCCc
Confidence 4445555554 478999999954 46799999999 52 211 1 245556777875
No 104
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=88.27 E-value=5.5 Score=41.62 Aligned_cols=151 Identities=13% Similarity=0.170 Sum_probs=86.1
Q ss_pred ecccccCCCCCCHHHHHHHH-HHHHHCCccCCCceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCcCccCCccc
Q 004451 44 ISSAGHISAGDSSLISAQRE-LQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTE 122 (753)
Q Consensus 44 lP~GG~Ve~gEs~~~AA~RE-l~EEtGl~v~~~~L~~l~~~~~~~~~~~g~~~~~~i~~vy~a~~~~~~~~~~~~~~~~E 122 (753)
+| .|-.++.-...++-.|. +.+.|+.. ..+++++++|....+...+ ..+.++.-|++-+..... .......-
T Consensus 48 LP-~GPfep~hrslq~glr~wV~~qT~~p--lGYiEQLYTF~Dr~R~~~~--g~rvisv~YLgLtr~~~~--~~~~~a~W 120 (322)
T COG4111 48 LP-SGPFEPAHRSLQAGLRAWVEKQTSQP--LGYIEQLYTFADRDRRNEG--GMRVISVSYLGLTREAAD--SIHAGAHW 120 (322)
T ss_pred CC-CCCCchHHHHHHHHHHHHHHHHhcCc--cchHHhhhhhccccccCcC--CceEEEEEEeeecchhcc--cCCccccc
Confidence 66 77777776555555555 56678888 5679999999876654322 457788888875432221 11111112
Q ss_pred eeeEEEeCHHHHHh----------------HHhcCCC-----------------CcccCCCCCchhHHHHHHHHH-----
Q 004451 123 VSAVKYIAYEEYKN----------------LLAKDDP-----------------SFVPYDVNGGYGQLFNIISQR----- 164 (753)
Q Consensus 123 v~e~~Wvs~~El~~----------------l~~~~~~-----------------~~~pw~~~~~~~~~f~~i~~~----- 164 (753)
.+.+.+|+|++... +....+. .=.||+.. ....-|+.+++-
T Consensus 121 ~~wy~yfPWED~R~grpa~~~d~i~p~Lr~Wa~~~d~~~~r~~R~~Ra~lafgld~~~WnEE-~vLqRYElLYEagLv~E 199 (322)
T COG4111 121 ADWYGYFPWEDHRTGRPAILLDAIVPRLRRWADSADDEEVRAQRRSRARLAFGLDGEPWNEE-RVLQRYELLYEAGLVRE 199 (322)
T ss_pred cchhccCCHhhhccCCchHHHHHHHHHHHHHhccCcchHHHHHHHhhhheeeecCCCCccHH-HHHHHHHHHHHhhhhHh
Confidence 33455677776431 1111100 01244321 111223333321
Q ss_pred -h-------h------------hhhhhhhHHHHHHHhhhhccccchhhcCCCHHHHHH
Q 004451 165 -Y-------K------------ENTMERSLTLQKQLRRYAHVSLNAELAGLSDADKEA 202 (753)
Q Consensus 165 -~-------~------------~~~~~~~lell~r~~~~~pv~~~~~f~~Lt~~Ek~y 202 (753)
- . ..+...++..++.+.+|.||.|+..+..||.-|+|.
T Consensus 200 A~~~~~~~~p~a~~G~~M~~DHRRIlATa~aRLR~KIKYRPVVFELmp~~FTLlqLQr 257 (322)
T COG4111 200 AARDGDPAEPAALTGRPMRHDHRRILATALARLRAKIKYRPVVFELMPPEFTLLQLQR 257 (322)
T ss_pred hhccCCccccccccCCcchhhHHHHHHHHHHHHHhcccccceEEEecCchhhHHHHHH
Confidence 0 0 123567788999999999999999999999877664
No 105
>PF14443 DBC1: DBC1
Probab=85.24 E-value=3.4 Score=38.89 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=32.9
Q ss_pred CCCeeec-ccccCCCC-CCHHHHHHHHHHHHHCCccCC-CceEEEEEEEee
Q 004451 39 PGMWDIS-SAGHISAG-DSSLISAQRELQEELGINLPK-DAFEFVFTFLQQ 86 (753)
Q Consensus 39 pG~W~lP-~GG~Ve~g-Es~~~AA~REl~EEtGl~v~~-~~L~~l~~~~~~ 86 (753)
.|.|+.. -||-...+ .++..+|+|-+++-|||+++. .+...+..++|.
T Consensus 23 GG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~Ct~W~rf~Ei~Y~ 73 (126)
T PF14443_consen 23 GGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSNCTQWYRFAEIHYY 73 (126)
T ss_pred CCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhhcCccceeeEEEEe
Confidence 4778764 26666654 468999999999999999753 334444455553
No 106
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=84.92 E-value=0.18 Score=54.26 Aligned_cols=55 Identities=29% Similarity=0.407 Sum_probs=41.9
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCCccC
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLP 73 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl~v~ 73 (753)
+.+..+++..-.++||++--. ..-|.+| -|.+..+|+-.+||+||+.||||.+++
T Consensus 84 v~ga~ild~~~sr~llv~g~q-----a~sw~fp-rgK~~kdesd~~caiReV~eetgfD~s 138 (348)
T KOG2937|consen 84 VRGAIILDEKRSRCLLVKGWQ-----ASSWSFP-RGKISKDESDSDCAIREVTEETGFDYS 138 (348)
T ss_pred CchHhhhhhhhhhhheeecee-----ccccccc-CccccccchhhhcchhcccchhhcCHH
Confidence 345556663334788775422 2349999 999999999999999999999999964
No 107
>KOG3675 consensus Dipeptidyl peptidase III [General function prediction only]
Probab=82.91 E-value=0.59 Score=50.79 Aligned_cols=39 Identities=18% Similarity=0.040 Sum_probs=29.2
Q ss_pred hhcCCCHHH---HHHHHHHHHHhhhccceeeeccCCCCHHHH
Q 004451 191 ELAGLSDAD---KEALVLVIKAATVMDEIFYLQVWYSNPVLR 229 (753)
Q Consensus 191 ~f~~Lt~~E---k~yl~~l~~Aa~~g~~I~~~Q~s~e~~~i~ 229 (753)
.|..+++.+ ..|.||++++.|.++-|-+.|+|++..+++
T Consensus 22 ~l~~~~p~aan~~~Y~~hf~kgP~~e~~igFIqtyrdp~G~r 63 (417)
T KOG3675|consen 22 ALKLLSPTAANKMKYVHHFSKGPWYEGLIGFIQTYRDPAGSR 63 (417)
T ss_pred HHHHhChhhhhhhhhhhhhhcCchhhhhhhhhhhcccccccc
Confidence 344444444 489999999999999999999996544443
No 108
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=79.75 E-value=4.5 Score=39.70 Aligned_cols=56 Identities=20% Similarity=0.308 Sum_probs=39.5
Q ss_pred cCCceEEEEEEEEecCCC--EEEEEEeCCCCCCCCCCeeecccccCCCCCCHHHHHHHHHHHHHCC
Q 004451 7 VGDYHRTVNAWIFAESTQ--ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGI 70 (753)
Q Consensus 7 ~g~~h~aV~v~V~~~~~g--~VLL~kRs~~k~~~pG~W~lP~GG~Ve~gEs~~~AA~REl~EEtGl 70 (753)
.|++..+-+++|+. +.+ .|||.+-. .-...+| ||.+++||+-.++..|-+.|-+|-
T Consensus 66 ~gmRrsvegvlivh-eH~lPHvLLLQig------~tf~KLP-GG~L~pGE~e~~Gl~r~l~~~Lgr 123 (221)
T KOG1689|consen 66 EGMRRSVEGVLIVH-EHNLPHVLLLQIG------NTFFKLP-GGRLRPGEDEADGLKRLLTESLGR 123 (221)
T ss_pred hhhhheeeeeEEEe-ecCCCeEEEEeeC------CEEEecC-CCccCCCcchhHHHHHHHHHHhcc
Confidence 34444444555555 332 56655432 2467888 999999999999999999999993
No 109
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=77.88 E-value=0.85 Score=44.47 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.3
Q ss_pred chhhhhhhcccCcCCCC
Q 004451 568 FTHNICHECCHGIGPHS 584 (753)
Q Consensus 568 ~~~v~lHElgHgsGk~~ 584 (753)
...|++|||||.+|-.+
T Consensus 107 ~~~~~~HEiGHaLGL~H 123 (157)
T cd04278 107 LFSVAAHEIGHALGLGH 123 (157)
T ss_pred HHHHHHHHhccccccCC
Confidence 55899999999999643
No 110
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=75.64 E-value=0.95 Score=44.05 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.1
Q ss_pred chhhhhhhcccCcCCCC
Q 004451 568 FTHNICHECCHGIGPHS 584 (753)
Q Consensus 568 ~~~v~lHElgHgsGk~~ 584 (753)
+..|++||+||.+|-.+
T Consensus 104 ~~~~~~HEiGHaLGL~H 120 (156)
T cd04279 104 LQAIALHELGHALGLWH 120 (156)
T ss_pred HHHHHHHHhhhhhcCCC
Confidence 45899999999999643
No 111
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=74.85 E-value=0.96 Score=44.07 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=14.9
Q ss_pred cchhhhhhhcccCcCCCC
Q 004451 567 FFTHNICHECCHGIGPHS 584 (753)
Q Consensus 567 ~~~~v~lHElgHgsGk~~ 584 (753)
...+|++|||||.+|-.+
T Consensus 93 ~~~~~~~HEiGHaLGL~H 110 (165)
T cd04268 93 RLRNTAEHELGHALGLRH 110 (165)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 456999999999999644
No 112
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=72.96 E-value=1 Score=43.30 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=14.5
Q ss_pred cchhhhhhhcccCcCCCC
Q 004451 567 FFTHNICHECCHGIGPHS 584 (753)
Q Consensus 567 ~~~~v~lHElgHgsGk~~ 584 (753)
....|++||+||.+|=.+
T Consensus 104 ~~~~v~~HEiGHaLGL~H 121 (154)
T PF00413_consen 104 DLQSVAIHEIGHALGLDH 121 (154)
T ss_dssp EHHHHHHHHHHHHTTBES
T ss_pred hhhhhhhhccccccCcCc
Confidence 355899999999999533
No 113
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=71.77 E-value=1.2 Score=44.60 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=15.4
Q ss_pred ccchhhhhhhcccCcCCCC
Q 004451 566 SFFTHNICHECCHGIGPHS 584 (753)
Q Consensus 566 ~~~~~v~lHElgHgsGk~~ 584 (753)
.+..+|++||+||.+|-.|
T Consensus 111 ~~~~~t~~HEiGHaLGL~H 129 (186)
T cd04277 111 SYGYQTIIHEIGHALGLEH 129 (186)
T ss_pred hhhHHHHHHHHHHHhcCCC
Confidence 3456999999999999644
No 114
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=70.90 E-value=20 Score=37.67 Aligned_cols=44 Identities=25% Similarity=0.234 Sum_probs=35.5
Q ss_pred EEEEEEeCCCCCCCCCCeeecccccC-CCCCCHHHHHHHHHHHHHCCcc
Q 004451 25 ELLLQRRADFKDSWPGMWDISSAGHI-SAGDSSLISAQRELQEELGINL 72 (753)
Q Consensus 25 ~VLL~kRs~~k~~~pG~W~lP~GG~V-e~gEs~~~AA~REl~EEtGl~v 72 (753)
-+||++|..++ .+.|-+| -+-. ++++++..+|.|+|++-.|-..
T Consensus 140 LyLLV~~k~g~---~s~w~fP-~~~~s~~~~~lr~~ae~~Lk~~~ge~~ 184 (263)
T KOG4548|consen 140 LYLLVKRKFGK---SSVWIFP-NRQFSSSEKTLRGHAERDLKVLSGENK 184 (263)
T ss_pred EEEEEeeccCc---cceeeCC-CcccCCccchHHHHHHHHHHHHhcchh
Confidence 46777765443 4689999 7777 9999999999999999988763
No 115
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=66.89 E-value=1.7 Score=41.33 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=13.2
Q ss_pred hhhhhhcccCcCCCCc
Q 004451 570 HNICHECCHGIGPHSI 585 (753)
Q Consensus 570 ~v~lHElgHgsGk~~~ 585 (753)
.|++||+||.+|-.+.
T Consensus 88 ~~~~HEigHaLGl~H~ 103 (140)
T smart00235 88 GVAAHELGHALGLYHE 103 (140)
T ss_pred ccHHHHHHHHhcCCcC
Confidence 4999999999997443
No 116
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=63.92 E-value=2.3 Score=41.35 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=14.8
Q ss_pred ccchhhhhhhcccCcCCC
Q 004451 566 SFFTHNICHECCHGIGPH 583 (753)
Q Consensus 566 ~~~~~v~lHElgHgsGk~ 583 (753)
.....|+.|||||.+|-.
T Consensus 94 ~~~~~~~~HElGH~LGl~ 111 (167)
T cd00203 94 KEGAQTIAHELGHALGFY 111 (167)
T ss_pred ccchhhHHHHHHHHhCCC
Confidence 345699999999999963
No 117
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=57.41 E-value=3.2 Score=42.24 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=15.1
Q ss_pred cchhhhhhhcccCcCCCCc
Q 004451 567 FFTHNICHECCHGIGPHSI 585 (753)
Q Consensus 567 ~~~~v~lHElgHgsGk~~~ 585 (753)
.+..|++||+||.+|-.+.
T Consensus 91 ~~~~~i~HElgHaLG~~HE 109 (198)
T cd04327 91 EFSRVVLHEFGHALGFIHE 109 (198)
T ss_pred hHHHHHHHHHHHHhcCccc
Confidence 3457999999999997543
No 118
>PF09471 Peptidase_M64: IgA Peptidase M64; InterPro: IPR019026 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of highly selective metallo-endopeptidases belonging to the MEROPS peptidase family M64 (IgA peptidase, clan MA). The primary structure of the Clostridium ramosum IgA peptidase shows no significant overall similarity to any other known metallo-endopeptidase []. ; PDB: 3P1V_A 4DF9_D.
Probab=57.31 E-value=3.2 Score=44.33 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.2
Q ss_pred cchhhhhhhcccCcCC
Q 004451 567 FFTHNICHECCHGIGP 582 (753)
Q Consensus 567 ~~~~v~lHElgHgsGk 582 (753)
.+.+|+.||+|||.|+
T Consensus 215 ~~~~v~vHE~GHsf~~ 230 (264)
T PF09471_consen 215 SFKQVVVHEFGHSFGG 230 (264)
T ss_dssp THHHHHHHHHHHHTT-
T ss_pred cccceeeeeccccccc
Confidence 3568999999999999
No 119
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=53.41 E-value=30 Score=37.19 Aligned_cols=34 Identities=26% Similarity=0.549 Sum_probs=23.9
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeec
Q 004451 11 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDIS 45 (753)
Q Consensus 11 h~aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP 45 (753)
+..+.++++...++++||+||.. +..+.|+|++|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~r~~-~~~~~gl~~~p 259 (275)
T TIGR01084 226 ERTTYFLVLQNYDGEVLLEQRPE-KGLWGGLYCFP 259 (275)
T ss_pred eEEEEEEEEEeCCCeEEEEeCCC-CchhhccccCC
Confidence 44445454321468999999954 46789999999
No 120
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=52.32 E-value=4.4 Score=40.76 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=13.5
Q ss_pred ccchhhhhhhcccCcCC
Q 004451 566 SFFTHNICHECCHGIGP 582 (753)
Q Consensus 566 ~~~~~v~lHElgHgsGk 582 (753)
.....|..||+||..|=
T Consensus 140 ~~~~~~~AHEiGH~lGa 156 (196)
T PF13688_consen 140 YNGAITFAHEIGHNLGA 156 (196)
T ss_dssp HHHHHHHHHHHHHHTT-
T ss_pred CceehhhHHhHHHhcCC
Confidence 33558999999999996
No 121
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=51.39 E-value=4.5 Score=37.38 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=11.3
Q ss_pred hhhhhhcccCcCC
Q 004451 570 HNICHECCHGIGP 582 (753)
Q Consensus 570 ~v~lHElgHgsGk 582 (753)
.|..||+||..|-
T Consensus 109 ~~~~HEiGH~lGl 121 (124)
T PF13582_consen 109 DTFAHEIGHNLGL 121 (124)
T ss_dssp THHHHHHHHHTT-
T ss_pred eEeeehhhHhcCC
Confidence 8899999999984
No 122
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=46.42 E-value=6.8 Score=40.91 Aligned_cols=13 Identities=31% Similarity=0.509 Sum_probs=12.3
Q ss_pred hhhhhhcccCcCC
Q 004451 570 HNICHECCHGIGP 582 (753)
Q Consensus 570 ~v~lHElgHgsGk 582 (753)
.|+.|||||.+|-
T Consensus 147 ~t~AHElGHnLGm 159 (228)
T cd04271 147 QVFAHEIGHTFGA 159 (228)
T ss_pred eehhhhhhhhcCC
Confidence 7999999999997
No 123
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=43.87 E-value=7.6 Score=39.67 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=14.1
Q ss_pred chhhhhhhcccCcCCCC
Q 004451 568 FTHNICHECCHGIGPHS 584 (753)
Q Consensus 568 ~~~v~lHElgHgsGk~~ 584 (753)
..+++.||+||.+|-.+
T Consensus 116 ~~~~~~he~gh~lGl~h 132 (197)
T cd04276 116 LRYLLAHEVGHTLGLRH 132 (197)
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 34899999999999644
No 124
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=43.21 E-value=8 Score=40.75 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=13.5
Q ss_pred cchhhhhhhcccCcCC
Q 004451 567 FFTHNICHECCHGIGP 582 (753)
Q Consensus 567 ~~~~v~lHElgHgsGk 582 (753)
....|+.|||||..|-
T Consensus 166 ~~a~t~AHElGHnlGm 181 (244)
T cd04270 166 ESDLVTAHELGHNFGS 181 (244)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 3457899999999997
No 125
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like
Probab=42.33 E-value=8.3 Score=39.58 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=13.3
Q ss_pred hhhhhhhcccCcCCCC
Q 004451 569 THNICHECCHGIGPHS 584 (753)
Q Consensus 569 ~~v~lHElgHgsGk~~ 584 (753)
.++..||+||-+|=.|
T Consensus 138 ~~~~aHEiGH~lGl~H 153 (206)
T PF13583_consen 138 YQTFAHEIGHNLGLRH 153 (206)
T ss_pred chHHHHHHHHHhcCCC
Confidence 3778999999999644
No 126
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=39.89 E-value=11 Score=38.98 Aligned_cols=15 Identities=47% Similarity=0.567 Sum_probs=13.0
Q ss_pred chhhhhhhcccCcCC
Q 004451 568 FTHNICHECCHGIGP 582 (753)
Q Consensus 568 ~~~v~lHElgHgsGk 582 (753)
..||+.|||||-.|-
T Consensus 133 ~~hvi~HEiGH~IGf 147 (211)
T PF12388_consen 133 IEHVITHEIGHCIGF 147 (211)
T ss_pred HHHHHHHHhhhhccc
Confidence 348999999999996
No 127
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=38.53 E-value=9.6 Score=38.22 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=14.7
Q ss_pred chhhhhhhcccCcCCCCc
Q 004451 568 FTHNICHECCHGIGPHSI 585 (753)
Q Consensus 568 ~~~v~lHElgHgsGk~~~ 585 (753)
...+++||+||.+|-.+.
T Consensus 74 ~~g~v~HE~~HalG~~HE 91 (180)
T cd04280 74 SLGTIVHELMHALGFYHE 91 (180)
T ss_pred cCchhHHHHHHHhcCcch
Confidence 358999999999997544
No 128
>PRK13910 DNA glycosylase MutY; Provisional
Probab=37.54 E-value=39 Score=36.66 Aligned_cols=29 Identities=10% Similarity=0.250 Sum_probs=21.4
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeec
Q 004451 13 TVNAWIFAESTQELLLQRRADFKDSWPGMWDIS 45 (753)
Q Consensus 13 aV~v~V~~~~~g~VLL~kRs~~k~~~pG~W~lP 45 (753)
...+++.+ ++++||+||. +..|.|+|++|
T Consensus 188 ~~~~~~~~--~~~~ll~kr~--~~l~~gl~~fP 216 (289)
T PRK13910 188 RYLGVVIQ--NNQIALEKIE--QKLYLGMHHFP 216 (289)
T ss_pred EEEEEEEE--CCEEEEEECC--CchhcccccCC
Confidence 33344444 6799999984 46899999999
No 129
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=36.81 E-value=9.1 Score=38.09 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=13.5
Q ss_pred cchhhhhhhcccCcCCCC
Q 004451 567 FFTHNICHECCHGIGPHS 584 (753)
Q Consensus 567 ~~~~v~lHElgHgsGk~~ 584 (753)
+.++|+.||+||-.|-.+
T Consensus 110 ~~~~~~aHElGH~lGa~H 127 (173)
T PF13574_consen 110 FGIDTFAHELGHQLGAPH 127 (173)
T ss_dssp HHHHHHHHHHHHHHT---
T ss_pred eeeeeehhhhHhhcCCCC
Confidence 477999999999999744
No 130
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=36.72 E-value=12 Score=37.41 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=13.5
Q ss_pred chhhhhhhcccCcCCC
Q 004451 568 FTHNICHECCHGIGPH 583 (753)
Q Consensus 568 ~~~v~lHElgHgsGk~ 583 (753)
...++.|||||-+|-.
T Consensus 133 ~~~~~aHElGH~lG~~ 148 (192)
T cd04267 133 TALTMAHELGHNLGAE 148 (192)
T ss_pred ehhhhhhhHHhhcCCc
Confidence 4578999999999973
No 131
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=36.01 E-value=11 Score=38.00 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=15.0
Q ss_pred chhhhhhhcccCcCCCCcc
Q 004451 568 FTHNICHECCHGIGPHSIT 586 (753)
Q Consensus 568 ~~~v~lHElgHgsGk~~~~ 586 (753)
...|++||+||.+|-.+..
T Consensus 77 ~~G~i~HEl~HaLG~~HEh 95 (182)
T cd04283 77 YKGIIQHELLHALGFYHEQ 95 (182)
T ss_pred ccchHHHHHHHHhCCcccc
Confidence 3479999999999975443
No 132
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=34.12 E-value=11 Score=35.80 Aligned_cols=14 Identities=36% Similarity=0.351 Sum_probs=11.6
Q ss_pred hhhhhhhcccCcCC
Q 004451 569 THNICHECCHGIGP 582 (753)
Q Consensus 569 ~~v~lHElgHgsGk 582 (753)
+.|..||+||-+|-
T Consensus 78 ~RIaaHE~GHiLGL 91 (132)
T PF02031_consen 78 TRIAAHELGHILGL 91 (132)
T ss_dssp HHHHHHHHHHHHT-
T ss_pred ceeeeehhccccCC
Confidence 46999999999883
No 133
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=33.98 E-value=12 Score=38.02 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=13.9
Q ss_pred chhhhhhhcccCcCCCCcc
Q 004451 568 FTHNICHECCHGIGPHSIT 586 (753)
Q Consensus 568 ~~~v~lHElgHgsGk~~~~ 586 (753)
...|++||+||.+|-.+..
T Consensus 79 ~~~~i~HEl~HaLG~~HEh 97 (191)
T PF01400_consen 79 SVGTILHELGHALGFWHEH 97 (191)
T ss_dssp SHHHHHHHHHHHHTB--GG
T ss_pred CccchHHHHHHHHhhhhhh
Confidence 3568999999999975543
No 134
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=31.69 E-value=15 Score=37.59 Aligned_cols=18 Identities=28% Similarity=0.156 Sum_probs=14.6
Q ss_pred hhhhhhhcccCcCCCCcc
Q 004451 569 THNICHECCHGIGPHSIT 586 (753)
Q Consensus 569 ~~v~lHElgHgsGk~~~~ 586 (753)
..|++|||||.+|-.+..
T Consensus 88 ~Gti~HEl~HaLGf~HEh 105 (200)
T cd04281 88 FGIVVHELGHVIGFWHEH 105 (200)
T ss_pred CchHHHHHHHHhcCcchh
Confidence 479999999999975543
No 135
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.
Probab=30.10 E-value=16 Score=35.84 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=13.1
Q ss_pred chhhhhhhcccCcCCCCc
Q 004451 568 FTHNICHECCHGIGPHSI 585 (753)
Q Consensus 568 ~~~v~lHElgHgsGk~~~ 585 (753)
...|+.||+||-+|=.++
T Consensus 69 ~g~TltHEvGH~LGL~Ht 86 (154)
T PF05572_consen 69 FGKTLTHEVGHWLGLYHT 86 (154)
T ss_dssp SSHHHHHHHHHHTT---T
T ss_pred cccchhhhhhhhhccccc
Confidence 458999999999997554
No 136
>PF11350 DUF3152: Protein of unknown function (DUF3152); InterPro: IPR022603 This entry represents Actinobacteria proteins of unknown function. Some are annotated as membrane proteins, however this cannot be confirmed.
Probab=30.03 E-value=24 Score=36.07 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=13.4
Q ss_pred hhhhhhcccCcCCCCcc
Q 004451 570 HNICHECCHGIGPHSIT 586 (753)
Q Consensus 570 ~v~lHElgHgsGk~~~~ 586 (753)
-+.-||+||++|-.++.
T Consensus 141 YvINHEVGH~LGh~H~~ 157 (203)
T PF11350_consen 141 YVINHEVGHALGHGHEP 157 (203)
T ss_pred HhhhhhhhhhcccCCCc
Confidence 56779999999986543
No 137
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=29.97 E-value=14 Score=33.12 Aligned_cols=44 Identities=23% Similarity=0.269 Sum_probs=27.4
Q ss_pred hhhhhhhcccCcCCCCcccCCcccccccchhhcccchHHhHHHHHHHHHHH
Q 004451 569 THNICHECCHGIGPHSITLPDGRQSTVRLELQELHSAMEEAKADIVGLWAL 619 (753)
Q Consensus 569 ~~v~lHElgHgsGk~~~~~~~g~~~t~~~~f~~~~s~~EEcRAe~vglyl~ 619 (753)
..+++|||||-. +..+. .+............-|.+|+.+|..++
T Consensus 43 ~f~laHELgH~~------~~~~~-~~~~~~~~~~~~~~~E~~An~fA~~lL 86 (122)
T PF06114_consen 43 RFTLAHELGHIL------LHHGD-ETFNYYLNYFFNERQEREANAFAAALL 86 (122)
T ss_dssp HHHHHHHHHHHH------HHH-H-HHHHHHHHH--THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------hhhcc-ccchhhccccchhhHHHHHHHHHHHHh
Confidence 368899999973 21111 111223455567788999999998888
No 138
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=29.68 E-value=16 Score=37.30 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=13.2
Q ss_pred chhhhhhhcccCcCC
Q 004451 568 FTHNICHECCHGIGP 582 (753)
Q Consensus 568 ~~~v~lHElgHgsGk 582 (753)
.+.|+.|||||.+|-
T Consensus 140 ~a~~~aHElGH~LG~ 154 (207)
T cd04273 140 SAFTIAHELGHVLGM 154 (207)
T ss_pred eEEeeeeechhhcCC
Confidence 458999999999996
No 139
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=29.12 E-value=21 Score=33.39 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.2
Q ss_pred hhhhhhhcccCcCC
Q 004451 569 THNICHECCHGIGP 582 (753)
Q Consensus 569 ~~v~lHElgHgsGk 582 (753)
.+|++||+||--|-
T Consensus 110 thvliHEIgHhFGL 123 (136)
T COG3824 110 THVLIHEIGHHFGL 123 (136)
T ss_pred hhhhhhhhhhhcCC
Confidence 49999999998884
No 140
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=28.71 E-value=21 Score=35.90 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=13.1
Q ss_pred chhhhhhhcccCcCC
Q 004451 568 FTHNICHECCHGIGP 582 (753)
Q Consensus 568 ~~~v~lHElgHgsGk 582 (753)
.+.++.|||||-.|-
T Consensus 131 ~a~~~AHElGH~lG~ 145 (194)
T cd04269 131 FAVTMAHELGHNLGM 145 (194)
T ss_pred HHHHHHHHHHhhcCC
Confidence 458999999999996
No 141
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=26.74 E-value=56 Score=24.55 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=12.0
Q ss_pred cccCCCCCCHHHHHHHHHHHHH
Q 004451 47 AGHISAGDSSLISAQRELQEEL 68 (753)
Q Consensus 47 GG~Ve~gEs~~~AA~REl~EEt 68 (753)
||...+|--+...+.||+.||+
T Consensus 15 ggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 15 GGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp --------S-HHHHHHHHHHHH
T ss_pred cccCCCCCCCchHHHHHHHHHH
Confidence 7888889989999999999995
No 142
>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily. Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.
Probab=26.32 E-value=20 Score=37.50 Aligned_cols=18 Identities=22% Similarity=0.264 Sum_probs=14.6
Q ss_pred hhhhhhhcccCcCCCCcc
Q 004451 569 THNICHECCHGIGPHSIT 586 (753)
Q Consensus 569 ~~v~lHElgHgsGk~~~~ 586 (753)
..+++|||||.+|-.+..
T Consensus 121 ~Gti~HEl~HalGf~HEq 138 (230)
T cd04282 121 KATVEHEFLHALGFYHEQ 138 (230)
T ss_pred CchHHHHHHHHhCCcccc
Confidence 578999999999975543
No 143
>COG5549 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=25.59 E-value=27 Score=35.86 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=13.2
Q ss_pred chhhhhhhcccCcCC
Q 004451 568 FTHNICHECCHGIGP 582 (753)
Q Consensus 568 ~~~v~lHElgHgsGk 582 (753)
.++++.||+||.+|.
T Consensus 187 L~~tarhElGhaLgi 201 (236)
T COG5549 187 LNPTARHELGHALGI 201 (236)
T ss_pred hhHHHHHhhcchhee
Confidence 348999999999997
No 144
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=25.11 E-value=42 Score=28.04 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=18.3
Q ss_pred cccCcc---ccceeeEEeeCHHHHHHHH
Q 004451 442 AIFGYK---ATFEAFIGIRDDKATAQVK 466 (753)
Q Consensus 442 p~~g~r---a~~E~~V~i~d~~~s~~~~ 466 (753)
|.+|-. -+|+|+|+|.|++.|+-=+
T Consensus 21 p~Cgs~~~S~~w~G~v~i~dPe~S~vAk 48 (64)
T PRK06393 21 PVHGDEKTTTEWFGFLIITEPEGSAIAK 48 (64)
T ss_pred CCCCCCcCCcCcceEEEEECCchhHHHH
Confidence 444443 4799999999999887543
No 145
>PF02128 Peptidase_M36: Fungalysin metallopeptidase (M36); InterPro: IPR001842 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M36 (fungalysin family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Fungalysin is produced by fungi, Aspergillus and other species, to aid degradation of host lung cell walls on infection. The enzyme is a 42kDa single chain protein, with a pH optimum of 7.5-8.0 and optimal temperature of 60 celcius [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0005615 extracellular space
Probab=22.66 E-value=41 Score=37.73 Aligned_cols=49 Identities=31% Similarity=0.329 Sum_probs=34.4
Q ss_pred ccchhhhhhhcccCcCCCCcccCCcccccccchhhc-ccchHHhHHHHHHHHHHH
Q 004451 566 SFFTHNICHECCHGIGPHSITLPDGRQSTVRLELQE-LHSAMEEAKADIVGLWAL 619 (753)
Q Consensus 566 ~~~~~v~lHElgHgsGk~~~~~~~g~~~t~~~~f~~-~~s~~EEcRAe~vglyl~ 619 (753)
+|...|++||.|||+-- -+.+|+.. .+.|.. .+.++=|+=.|.+||.+.
T Consensus 183 ~~D~~Ii~HEy~HGiSn---RLvgG~~~--s~cL~~~e~~~mGEGWsD~~Al~~~ 232 (378)
T PF02128_consen 183 DFDNGIIAHEYGHGISN---RLVGGPAN--SSCLQNLESGGMGEGWSDFFALMMT 232 (378)
T ss_pred ccccCeeEEeecccccc---cccCCCcc--cccccccccCCCcccHHHHHHHHhe
Confidence 77889999999999875 44455421 234543 467777888888888765
No 146
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=22.32 E-value=28 Score=35.83 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=12.9
Q ss_pred hhhhhhhcccCcCC
Q 004451 569 THNICHECCHGIGP 582 (753)
Q Consensus 569 ~~v~lHElgHgsGk 582 (753)
+.|+.|||||-+|-
T Consensus 146 ~~~~AHElGH~lG~ 159 (220)
T cd04272 146 VYTMTHELAHLLGA 159 (220)
T ss_pred HHHHHHHHHHHhCC
Confidence 58999999999997
No 147
>PF05548 Peptidase_M11: Gametolysin peptidase M11; InterPro: IPR008752 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M11 (gametolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The type example is gametolysin from the unicellular biflagellated alga, Chlamydomonas reinhardtii Gametolysin is a zinc-containing metallo-protease, which is responsible for the degradation of the cell wall. Homologues of gametolysin have also been reported in the simple multicellular organism, Volvox [, ].
Probab=21.45 E-value=34 Score=37.54 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=12.0
Q ss_pred hhhhhhcccCcCCC
Q 004451 570 HNICHECCHGIGPH 583 (753)
Q Consensus 570 ~v~lHElgHgsGk~ 583 (753)
.|.+||+||..|-.
T Consensus 152 ~~~~HElgHN~GL~ 165 (314)
T PF05548_consen 152 ATIMHELGHNLGLW 165 (314)
T ss_pred HHHHHHhhhhcccc
Confidence 38999999999963
No 148
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=21.24 E-value=26 Score=31.74 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=20.1
Q ss_pred ccccccccCHhhHhhhcccccchhhhhhhcccCcCC
Q 004451 547 RPIADVCIRKEQQELVDFDSFFTHNICHECCHGIGP 582 (753)
Q Consensus 547 ~~~~~~~i~~~~~~~~~~~~~~~~v~lHElgHgsGk 582 (753)
+|+...+-+.+++.... -+|++||+||=.|.
T Consensus 57 ~pl~~~~~~~~eL~~~I-----~~tlvhEiah~fG~ 87 (97)
T PF06262_consen 57 RPLERRARSREELAELI-----RDTLVHEIAHHFGI 87 (97)
T ss_dssp HHHHHT-SSHHHHHHHH-----HHHHHHHHHHHTT-
T ss_pred HHHHHHhCCHHHHHHHH-----HHHHHHHHHHHcCC
Confidence 34445566776654433 28999999999885
No 149
>KOG1565 consensus Gelatinase A and related matrix metalloproteases [Posttranslational modification, protein turnover, chaperones; Extracellular structures]
Probab=21.16 E-value=37 Score=39.35 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=14.2
Q ss_pred chhhhhhhcccCcCCCC
Q 004451 568 FTHNICHECCHGIGPHS 584 (753)
Q Consensus 568 ~~~v~lHElgHgsGk~~ 584 (753)
..+|+.||+||.+|-.+
T Consensus 211 l~~Va~HEiGH~LGL~H 227 (469)
T KOG1565|consen 211 LFLVAAHEIGHALGLGH 227 (469)
T ss_pred hHHHhhhhcccccccCC
Confidence 44999999999999644
No 150
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=20.91 E-value=30 Score=34.95 Aligned_cols=15 Identities=40% Similarity=0.596 Sum_probs=12.4
Q ss_pred chhhhhhhcccCcCC
Q 004451 568 FTHNICHECCHGIGP 582 (753)
Q Consensus 568 ~~~v~lHElgHgsGk 582 (753)
...++.||+||.+|-
T Consensus 131 ~a~~~AHelGH~lGm 145 (199)
T PF01421_consen 131 FAVIIAHELGHNLGM 145 (199)
T ss_dssp HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhcCC
Confidence 458889999999996
No 151
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=20.85 E-value=36 Score=35.43 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=12.1
Q ss_pred chhhhhhhcccCcCC
Q 004451 568 FTHNICHECCHGIGP 582 (753)
Q Consensus 568 ~~~v~lHElgHgsGk 582 (753)
-+-|+.||+||..=-
T Consensus 89 AvaVAAHEvGHAiQ~ 103 (222)
T PF04298_consen 89 AVAVAAHEVGHAIQH 103 (222)
T ss_pred HHHHHHHHHhHHHhc
Confidence 458999999999643
No 152
>cd04275 ZnMc_pappalysin_like Zinc-dependent metalloprotease, pappalysin_like subfamily. The pregnancy-associated plasma protein A (PAPP-A or pappalysin-1) cleaves insulin-like growth factor-binding proteins 4 and 5, thereby promoting cell growth by releasing bound growth factor. This model includes pappalysins and related metalloprotease domains from all three kingdoms of life. The three-dimensional structure of an archaeal representative, ulilysin, has been solved.
Probab=20.70 E-value=28 Score=36.34 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=14.9
Q ss_pred chhhhhhhcccCcCCCCcc
Q 004451 568 FTHNICHECCHGIGPHSIT 586 (753)
Q Consensus 568 ~~~v~lHElgHgsGk~~~~ 586 (753)
...|+.||+||-+|-.|+.
T Consensus 137 ~g~t~~HEvGH~lGL~HtF 155 (225)
T cd04275 137 LGDTATHEVGHWLGLYHTF 155 (225)
T ss_pred ccceeEEeccceeeeeeee
Confidence 4478999999999965543
No 153
>COG3101 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.01 E-value=99 Score=29.88 Aligned_cols=49 Identities=12% Similarity=0.046 Sum_probs=29.2
Q ss_pred ccccceeEeecCCCcccCCCcCCcccCCCCccccCCcEEEEee-ccccHHHHHHHHHHHHHH
Q 004451 330 ATSFFTVIKRRSEFNLDSSLSGHIVDATNHSVGSIYDLYSVPY-SEEYNSYLTRASELLHKA 390 (753)
Q Consensus 330 ~~~~~t~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~y-~g~y~~~l~~v~~~L~~A 390 (753)
...+||++.|..|. |.|-.+...+ ..-.+.| +|-|++.|-.|+.|+-.-
T Consensus 17 ~~eyNT~LvkG~DE---------PiYlPAde~v---pyhri~FA~GfYaSalHEIaHWcvAG 66 (180)
T COG3101 17 ADEYNTRLVKGDDE---------PIYLPADEEV---PYHRIVFAHGFYASALHEISHWCIAG 66 (180)
T ss_pred HHhhcceeeeCCCc---------ceeccCccCC---CceeEEEechhHHHHHHHHHHHHHcc
Confidence 34589999998642 2222221100 0011222 499999999999999643
Done!