Query 004452
Match_columns 753
No_of_seqs 116 out of 125
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 23:40:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2293 Daxx-interacting prote 100.0 4.6E-36 1E-40 327.5 12.5 121 627-749 373-496 (547)
2 PF13325 MCRS_N: N-terminal re 99.2 1.8E-11 4E-16 123.1 4.6 71 606-678 123-194 (199)
3 cd00060 FHA Forkhead associate 96.8 0.0045 9.7E-08 53.1 6.9 52 689-746 4-60 (102)
4 KOG2293 Daxx-interacting prote 96.0 0.0036 7.8E-08 71.3 2.3 106 606-721 331-452 (547)
5 PF00498 FHA: FHA domain; Int 95.6 0.021 4.5E-07 46.9 4.7 35 706-747 1-37 (68)
6 COG5025 Transcription factor o 94.9 0.0081 1.8E-07 70.0 0.6 61 686-749 71-149 (610)
7 smart00240 FHA Forkhead associ 94.6 0.034 7.5E-07 43.1 3.2 41 706-752 1-43 (52)
8 TIGR03354 VI_FHA type VI secre 85.5 0.82 1.8E-05 51.2 4.0 49 693-746 13-62 (396)
9 COG1716 FOG: FHA domain [Signa 82.4 1.8 4E-05 41.9 4.4 53 687-746 72-125 (191)
10 PLN02927 antheraxanthin epoxid 39.1 35 0.00076 41.2 4.4 50 702-753 555-605 (668)
11 COG3456 Predicted component of 35.0 28 0.00061 40.0 2.6 47 694-746 16-64 (430)
12 PF09036 Bcr-Abl_Oligo: Bcr-Ab 24.3 1.1E+02 0.0024 27.9 4.0 28 652-684 31-64 (79)
13 PF09781 NDUF_B5: NADH:ubiquin 23.1 84 0.0018 32.8 3.4 35 646-680 125-159 (187)
No 1
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-36 Score=327.45 Aligned_cols=121 Identities=60% Similarity=0.886 Sum_probs=111.3
Q ss_pred CCCCCcchHHHHhhcCCCCCCChhhhhHhhhhcccHHHHHHHHHHHhhHHHHHHHHhccCCceEEEEecceeEeeecCeE
Q 004452 627 DDVPYFSDIEAMILDMDLDPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSYMQRAILSHGAFAILYGRHSKHYIKKPEV 706 (753)
Q Consensus 627 d~vpsFSDaE~~Ild~dL~p~Dq~~~~~Elsr~q~~~~kr~I~rLE~e~~~~~~~~~~~~~alAvL~G~~~~y~mr~~eI 706 (753)
++++ ||+|+||+|+||.|.||+....|.+.++.+..++.|.||||...+||||+|+.+||||||||++++||||++||
T Consensus 373 E~Le--~diEami~D~dl~p~~qd~r~le~e~~r~~~l~~~iirleqs~~~~mqrai~~hgAiAvL~Gr~skh~mrk~EV 450 (547)
T KOG2293|consen 373 EELE--SDIEAMILDMDLEPDDQDIRSLEAEKSRSQVLVRSIIRLEQSAESYMQRAIAFHGAIAVLYGRFSKHYMRKKEV 450 (547)
T ss_pred cccc--chHHHHHhhcccCCcchHHHHHHHHHhhhHHHHHHhhhhhhcccchhhhhhhhcceeEEEechhhHhhhcCcce
Confidence 4556 99999999999999999943444444677888999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCccceecCCCCCCccccccceEEeeccc--eeEE-ecc
Q 004452 707 LLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS--LFIK-IGH 749 (753)
Q Consensus 707 viGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d--FyI~-ig~ 749 (753)
+|||+|.+++|||||++||||+|||||||+|||.++ |+|+ .|.
T Consensus 451 tlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlGK 496 (547)
T KOG2293|consen 451 TLGRATGDLKVDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLGK 496 (547)
T ss_pred EeeccCCCcceeeeccccCccceeeccceeEEeccCCcEEeccCcc
Confidence 999999999999999999999999999999999988 9999 653
No 2
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=99.17 E-value=1.8e-11 Score=123.06 Aligned_cols=71 Identities=27% Similarity=0.360 Sum_probs=64.8
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCcchHHHHhhcCCC-CCCChhhhhHhhhhcccHHHHHHHHHHHhhHHHH
Q 004452 606 AEPIMNPSTTEPEDPSVESDDDDVPYFSDIEAMILDMDL-DPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSY 678 (753)
Q Consensus 606 ~~~~~y~ll~DQ~~~~~~~~~d~vpsFSDaE~~Ild~dL-~p~Dq~~~~~Elsr~q~~~~kr~I~rLE~e~~~~ 678 (753)
+.|++|+||+||.+++.+..++.+++|||+|++|+|.+| .|+|+. +++|+. +++|++||+||+||+|+.+|
T Consensus 123 ~lmkqy~LL~DQ~v~~~~~~~~~~~sfsDaEd~i~d~~l~~~~de~-l~~el~-~~dr~~k~~ir~lE~el~~w 194 (199)
T PF13325_consen 123 RLMKQYHLLPDQSVQPLPKQDDQVLSFSDAEDLIDDSELKDPRDEA-LEHELE-LADRRQKREIRQLENELSRW 194 (199)
T ss_pred HHHHHhchhhccccCCCCCCCccccccccHHHHhhccccccCcccc-cchhhh-HHhHHHHHHHHHHHHHhhhh
Confidence 479999999999999998874589999999999999999 477875 499997 79999999999999999999
No 3
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=96.76 E-value=0.0045 Score=53.07 Aligned_cols=52 Identities=21% Similarity=0.402 Sum_probs=43.1
Q ss_pred eEEEEe--cceeEeeec-CeEEEccCCCCCccceecCCCCCCccccccceEEeecc-c-eeEE
Q 004452 689 FAILYG--RHSKHYIKK-PEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVK-S-LFIK 746 (753)
Q Consensus 689 lAvL~G--~~~~y~mr~-~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~-d-FyI~ 746 (753)
|.++.| ...+|.|+. .+++|||+... +||-|. ...|||+||+|++.. . +|+.
T Consensus 4 L~~~~~~~~~~~~~l~~~~~~~iGr~~~~--~~i~l~----~~~iS~~H~~i~~~~~~~~~~~ 60 (102)
T cd00060 4 LVVLSGDASGRRYYLDPGGTYTIGRDSDN--CDIVLD----DPSVSRRHAVIRYDGDGGVVLI 60 (102)
T ss_pred EEEecCCCceeEEEECCCCeEEECcCCCc--CCEEcC----CCCeeCcceEEEEcCCCCEEEE
Confidence 566666 788999999 99999999987 677774 789999999999998 4 5554
No 4
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=95.98 E-value=0.0036 Score=71.30 Aligned_cols=106 Identities=18% Similarity=0.202 Sum_probs=84.2
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCcchHHHHhhcCCC-CCCChhh-hhHhhhhcccHHHH---HHHHHHHhhHHHH--
Q 004452 606 AEPIMNPSTTEPEDPSVESDDDDVPYFSDIEAMILDMDL-DPDDQGI-YEQEVSKYQHEDTR---RAIIRLEQGAHSY-- 678 (753)
Q Consensus 606 ~~~~~y~ll~DQ~~~~~~~~~d~vpsFSDaE~~Ild~dL-~p~Dq~~-~~~Elsr~q~~~~k---r~I~rLE~e~~~~-- 678 (753)
+.|++|+++++|+++|.... |+ ++|+++|+.+....+ .+.|+++ .+.|.+ ..|++.+ +.|+.||+++.+|
T Consensus 331 ~l~k~~s~~e~~~v~p~~~s-d~-l~~~~ae~q~~~~~~~~e~DE~Le~diEam-i~D~dl~p~~qd~r~le~e~~r~~~ 407 (547)
T KOG2293|consen 331 QLMKQYSCLEDQEVTPQNES-DH-LRRIDAEDQIQGENYNEESDEELESDIEAM-ILDMDLEPDDQDIRSLEAEKSRSQV 407 (547)
T ss_pred hhhhhcccccccccccccCC-cc-cccccchhccchhhhcccccccccchHHHH-HhhcccCCcchHHHHHHHHHhhhHH
Confidence 47899999999999999877 55 999999999998888 5888874 346775 6899999 9999999999999
Q ss_pred HHHHhccCCceEEEEecceeEeee-------cCeEEEccCCCC--Cccceec
Q 004452 679 MQRAILSHGAFAILYGRHSKHYIK-------KPEVLLGRATED--VVVDIDL 721 (753)
Q Consensus 679 ~~~~~~~~~alAvL~G~~~~y~mr-------~~eIviGR~T~~--~~VDIDL 721 (753)
|.++++... .-..+||+ .-.|+-||-++. .+--|=|
T Consensus 408 l~~~iirle-------qs~~~~mqrai~~hgAiAvL~Gr~skh~mrk~EVtl 452 (547)
T KOG2293|consen 408 LVRSIIRLE-------QSAESYMQRAIAFHGAIAVLYGRFSKHYMRKKEVTL 452 (547)
T ss_pred HHHHhhhhh-------hcccchhhhhhhhcceeEEEechhhHhhhcCcceEe
Confidence 777775522 23467888 788999997774 3344444
No 5
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=95.57 E-value=0.021 Score=46.94 Aligned_cols=35 Identities=34% Similarity=0.429 Sum_probs=27.9
Q ss_pred EEEccCCCCCccceecCCCCCCccccccceEEeeccc--eeEEe
Q 004452 706 VLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS--LFIKI 747 (753)
Q Consensus 706 IviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d--FyI~i 747 (753)
++|||+ ...||-|. ...|||+||.|.+..+ |||+-
T Consensus 1 ~~iGR~---~~~di~l~----~~~iSr~Ha~i~~~~~~~~~i~d 37 (68)
T PF00498_consen 1 VTIGRS---PDCDIVLP----DPSISRRHARISFDDDGQFYIED 37 (68)
T ss_dssp EEEESS---TTSSEEET----STTSSTTSEEEEEETTEEEEEEE
T ss_pred CEEcCC---CCCCEEEC----CHheeeeeeEEEEeceeeEEEEe
Confidence 689999 34555553 4679999999999988 99993
No 6
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=94.95 E-value=0.0081 Score=70.01 Aligned_cols=61 Identities=25% Similarity=0.137 Sum_probs=51.1
Q ss_pred CCceEEEEecceeEeeecCeEEEccCCCC---------------CccceecCCCCCCccccccceEEeeccc---eeEEe
Q 004452 686 HGAFAILYGRHSKHYIKKPEVLLGRATED---------------VVVDIDLGREGRTNKISRRQVYNVFVKS---LFIKI 747 (753)
Q Consensus 686 ~~alAvL~G~~~~y~mr~~eIviGR~T~~---------------~~VDIDLs~EGpa~kISRrQA~Ikl~~d---FyI~i 747 (753)
.+++|.|.|..|.||.+..++.+||.+.- +.+++++ |++++++|+|+.|+.+-+ -+|+|
T Consensus 71 ~qayak~~g~~~t~~v~~~s~a~gr~~~il~s~~~~lt~s~~~~~~~~~~~---~~~k~~~~~~~sIr~Nls~~~a~~~i 147 (610)
T COG5025 71 IQAYAKLAGSNWTYYVPPYSYATGRGLAILNSPDKPLTLSKIYTWIHNTFF---YYAKVVSRWQNSIRHNLSLNDAFIKI 147 (610)
T ss_pred hhhHHHhcCCCcccccCCeeeeeccccccccCcccCCcccceeeeeeeccc---ccccccchhhhhhhcccccCceEEEE
Confidence 36779999999999999999999997662 3477888 999999999999999855 66665
Q ss_pred cc
Q 004452 748 GH 749 (753)
Q Consensus 748 g~ 749 (753)
-|
T Consensus 148 ~g 149 (610)
T COG5025 148 EG 149 (610)
T ss_pred ec
Confidence 44
No 7
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=94.65 E-value=0.034 Score=43.12 Aligned_cols=41 Identities=34% Similarity=0.510 Sum_probs=29.4
Q ss_pred EEEccCCCCCccceecCCCCCCccccccceEEeeccc--eeEEecccCC
Q 004452 706 VLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS--LFIKIGHDKH 752 (753)
Q Consensus 706 IviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d--FyI~ig~~~~ 752 (753)
++|||+...+ ||-|. ++. |||+||.|+++.+ |||+-...++
T Consensus 1 ~~iGr~~~~~--~i~~~--~~~--vs~~H~~i~~~~~~~~~i~d~~s~~ 43 (52)
T smart00240 1 VTIGRSSEDC--DIQLP--GPS--ISRRHAEIVYDGGGRFYLIDLGSTN 43 (52)
T ss_pred CEeCCCCCCC--CEEeC--CCC--cchhHcEEEECCCCeEEEEECCCCC
Confidence 4799998733 44442 443 9999999999976 9998554443
No 8
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=85.53 E-value=0.82 Score=51.17 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=38.8
Q ss_pred EecceeEeeecCeEEEccCCCCCccceecCCCCCCccccccceEEeeccc-eeEE
Q 004452 693 YGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS-LFIK 746 (753)
Q Consensus 693 ~G~~~~y~mr~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d-FyI~ 746 (753)
.|....|.+.....+|||+.. .|+=| ..+...|||+||+|.+..+ |||+
T Consensus 13 ~g~~~~~~f~~~~~~IGR~~~---~d~~l--~d~~~~VS~~Ha~I~~~~g~~~l~ 62 (396)
T TIGR03354 13 PGIAAQKTFGTNGGTIGRSED---CDWVL--PDPERHVSGRHARIRYRDGAYLLT 62 (396)
T ss_pred CCcceEEEECCCCEEEecCCC---CCEEe--CCCCCCcchhhcEEEEECCEEEEE
Confidence 356678899999999999885 23333 3566779999999999977 9998
No 9
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=82.36 E-value=1.8 Score=41.85 Aligned_cols=53 Identities=25% Similarity=0.229 Sum_probs=36.0
Q ss_pred CceEEEEecceeEeeecCeEEEccCCCCCccceecCCCCCCccccccceEEeeccc-eeEE
Q 004452 687 GAFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS-LFIK 746 (753)
Q Consensus 687 ~alAvL~G~~~~y~mr~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d-FyI~ 746 (753)
....+......++......+++|| +. ..||=| +-..|||+||.|++..+ +||+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~tigr-~~--~~~i~~----~~~~vSR~Ha~l~~~~~~~~~~ 125 (191)
T COG1716 72 LAVTIGLDEGSVIVLGEPVTTIGR-DP--DNDIVL----DDDVVSRRHAELRREGNEVFLE 125 (191)
T ss_pred ceEEEecccCcccccccceEEecc-CC--CCCEEc----CCCccccceEEEEEeCCceEEE
Confidence 333344444556777777999999 22 222222 34889999999999999 7766
No 10
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=39.07 E-value=35 Score=41.17 Aligned_cols=50 Identities=10% Similarity=0.274 Sum_probs=33.8
Q ss_pred ecCeEEEccCCCCCccceecCCCCCCccccccceEEeeccc-eeEEecccCCC
Q 004452 702 KKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS-LFIKIGHDKHG 753 (753)
Q Consensus 702 r~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d-FyI~ig~~~~~ 753 (753)
.+.-.+|||.+.....+.-+ -=+...||++||.|.++.+ |||+=....||
T Consensus 555 ~~~p~~iG~~~~~~~~~~~i--~i~~~~vS~~Ha~i~~~~~~~~~~Dl~S~nG 605 (668)
T PLN02927 555 EDQPCIVGSEPDQDFPGMRI--VIPSSQVSKMHARVIYKDGAFFLMDLRSEHG 605 (668)
T ss_pred CCCCeEecCCCCcCCCCceE--EecCCccChhHeEEEEECCEEEEEECCCCCc
Confidence 56678999998754311111 1134789999999999988 99994444443
No 11
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=34.96 E-value=28 Score=39.99 Aligned_cols=47 Identities=13% Similarity=0.339 Sum_probs=36.1
Q ss_pred ecceeEeeecCeEEEccCCC-CCccceecCCCCCCccccccceEEeeccc-eeEE
Q 004452 694 GRHSKHYIKKPEVLLGRATE-DVVVDIDLGREGRTNKISRRQVYNVFVKS-LFIK 746 (753)
Q Consensus 694 G~~~~y~mr~~eIviGR~T~-~~~VDIDLs~EGpa~kISRrQA~Ikl~~d-FyI~ 746 (753)
|+-.++......-+|||+-. ++.|| -+-..||++|++|.++.. |||+
T Consensus 16 G~~aq~~f~~~~g~IGrs~dcdW~i~------D~~~~VS~~Hc~I~~~dg~f~L~ 64 (430)
T COG3456 16 GKAAQKLFDRGGGVIGRSPDCDWQID------DPERFVSKQHCTISYRDGGFCLT 64 (430)
T ss_pred chhhhhhhhcCCcccccCCCCCcccc------CcccccchhheEEEecCCeEEEE
Confidence 44556777777889999654 34433 466789999999999988 9998
No 12
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=24.31 E-value=1.1e+02 Score=27.86 Aligned_cols=28 Identities=36% Similarity=0.528 Sum_probs=21.2
Q ss_pred hhHhhhhcccHHHHHHHHHHHhhHHH------HHHHHhc
Q 004452 652 YEQEVSKYQHEDTRRAIIRLEQGAHS------YMQRAIL 684 (753)
Q Consensus 652 ~~~Elsr~q~~~~kr~I~rLE~e~~~------~~~~~~~ 684 (753)
+++||. +-|-.|+||||++.. |+|.+.+
T Consensus 31 ~e~eLe-----rCK~sirrLeqevnkERFrmiYLQTlLA 64 (79)
T PF09036_consen 31 IEQELE-----RCKASIRRLEQEVNKERFRMIYLQTLLA 64 (79)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467775 468899999999985 5776654
No 13
>PF09781 NDUF_B5: NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit; InterPro: IPR019173 Members of this family mediate the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone, the reaction that occurs being: NADH + ubiquinone = NAD(+) + ubiquinol [, ].
Probab=23.11 E-value=84 Score=32.80 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=29.8
Q ss_pred CCChhhhhHhhhhcccHHHHHHHHHHHhhHHHHHH
Q 004452 646 PDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSYMQ 680 (753)
Q Consensus 646 p~Dq~~~~~Elsr~q~~~~kr~I~rLE~e~~~~~~ 680 (753)
+..|..+|..+..++...+|+++|++|++..++|.
T Consensus 125 ~spq~~YEk~la~l~~e~ek~~lr~~e~~Vr~lm~ 159 (187)
T PF09781_consen 125 PSPQKNYEKMLAYLQIENEKAELRLLEKEVRRLMR 159 (187)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556568889889999999999999999998864
Done!