Query 004452
Match_columns 753
No_of_seqs 116 out of 125
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 01:38:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3po8_A RV0020C protein, putati 95.9 0.0082 2.8E-07 52.3 5.2 51 691-748 10-62 (100)
2 1lgp_A Cell cycle checkpoint p 95.9 0.015 5E-07 51.8 6.9 54 688-747 3-64 (116)
3 1r21_A Antigen KI-67; beta san 95.5 0.023 8E-07 51.6 6.8 55 687-748 13-72 (128)
4 2kb3_A Oxoglutarate dehydrogen 95.5 0.028 9.6E-07 52.8 7.3 55 687-748 47-105 (143)
5 1uht_A Expressed protein; FHA 95.4 0.015 5E-07 52.1 4.9 46 697-748 25-73 (118)
6 2xt9_B Putative signal transdu 95.4 0.037 1.3E-06 49.5 7.4 55 687-748 12-70 (115)
7 2pie_A E3 ubiquitin-protein li 95.3 0.028 9.6E-07 51.9 6.6 46 698-746 21-69 (138)
8 2kfu_A RV1827 PThr 22; FHA dom 95.3 0.026 8.8E-07 54.3 6.5 55 687-748 56-114 (162)
9 3gqs_A Adenylate cyclase-like 95.2 0.03 1E-06 49.3 6.1 52 689-746 7-63 (106)
10 1g6g_A Protein kinase RAD53; b 95.2 0.027 9.4E-07 51.2 6.1 36 705-746 37-74 (127)
11 2jpe_A Nuclear inhibitor of pr 95.0 0.022 7.6E-07 52.7 4.8 53 688-746 36-94 (140)
12 1gxc_A CHK2, CDS1, serine/thre 94.9 0.023 7.8E-07 53.3 4.9 52 693-747 37-99 (149)
13 3va4_A Mediator of DNA damage 94.9 0.038 1.3E-06 51.2 6.1 54 686-746 24-83 (132)
14 3oun_A Putative uncharacterize 94.5 0.037 1.3E-06 53.2 5.2 49 693-748 74-124 (157)
15 2csw_A Ubiquitin ligase protei 94.5 0.051 1.8E-06 50.7 5.9 45 699-746 30-77 (145)
16 1g3g_A Protien kinase SPK1; FH 93.9 0.061 2.1E-06 51.3 5.4 36 705-746 65-102 (164)
17 3hx1_A SLR1951 protein; P74513 93.9 0.15 5E-06 47.1 7.6 54 686-746 10-71 (131)
18 1mzk_A Kinase associated prote 93.7 0.084 2.9E-06 48.8 5.8 52 688-746 9-70 (139)
19 2ff4_A Probable regulatory pro 93.6 0.17 5.6E-06 53.6 8.4 47 695-748 297-345 (388)
20 4ejq_A Kinesin-like protein KI 93.1 0.12 4.2E-06 48.8 5.9 44 695-742 52-95 (154)
21 3fm8_A Kinesin-like protein KI 93.1 0.11 3.7E-06 48.0 5.4 45 696-748 41-88 (124)
22 1wln_A Afadin; beta sandwich, 93.0 0.16 5.5E-06 45.7 6.2 47 696-748 28-77 (120)
23 4h87_A Kanadaptin; FHA domain 92.8 0.2 6.9E-06 46.2 6.8 46 688-740 22-70 (130)
24 1dmz_A Protein (protein kinase 91.7 0.11 3.9E-06 49.2 3.8 38 697-741 18-57 (158)
25 3els_A PRE-mRNA leakage protei 91.5 0.32 1.1E-05 46.4 6.6 55 688-746 33-111 (158)
26 2jqj_A DNA damage response pro 91.4 0.37 1.3E-05 45.1 6.8 44 696-746 29-82 (151)
27 1qu5_A Protein kinase SPK1; FH 90.0 0.17 5.9E-06 49.3 3.3 38 697-741 42-81 (182)
28 3elv_A PRE-mRNA leakage protei 87.9 0.82 2.8E-05 45.9 6.6 55 688-746 80-158 (205)
29 3kt9_A Aprataxin; FHA domain, 85.1 0.92 3.1E-05 40.9 4.7 39 702-749 21-63 (102)
30 2brf_A Bifunctional polynucleo 84.3 0.89 3E-05 41.7 4.3 48 693-749 16-69 (110)
31 3i6u_A CDS1, serine/threonine- 81.6 0.8 2.7E-05 48.0 3.3 59 687-746 11-78 (419)
32 4egx_A Kinesin-like protein KI 79.1 1.5 5.3E-05 42.7 4.2 43 695-741 82-124 (184)
33 3huf_A DNA repair and telomere 78.5 2.8 9.4E-05 44.9 6.1 39 698-740 15-53 (325)
34 1ujx_A Polynucleotide kinase 3 72.6 3.1 0.00011 38.7 4.1 47 694-749 24-76 (119)
35 1yj5_C 5' polynucleotide kinas 51.9 9.8 0.00034 36.5 3.5 47 694-749 17-69 (143)
36 3uv0_A Mutator 2, isoform B; F 38.7 27 0.00093 31.8 4.0 46 694-746 11-57 (102)
37 1k1f_A Breakpoint cluster regi 24.8 71 0.0024 27.4 4.0 28 652-684 31-64 (72)
No 1
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=95.93 E-value=0.0082 Score=52.28 Aligned_cols=51 Identities=14% Similarity=0.264 Sum_probs=39.5
Q ss_pred EEEecceeEeeecCeEEEccCCCCCccceecCCCCCCccccccceEEeeccc-eeEE-ec
Q 004452 691 ILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS-LFIK-IG 748 (753)
Q Consensus 691 vL~G~~~~y~mr~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d-FyI~-ig 748 (753)
+..|.-.+|.+...+++|||+.. .||-|. ...|||+||.|.+... |||+ .|
T Consensus 10 ~~~g~g~~~~l~~~~~~IGR~~~---~di~l~----d~~vSr~Ha~i~~~~~~~~l~Dl~ 62 (100)
T 3po8_A 10 LDDGSGRTYQLREGSNIIGRGQD---AQFRLP----DTGVSRRHLEIRWDGQVALLADLN 62 (100)
T ss_dssp ECSSSCCEEECCSEEEEEESSTT---CSEECC----CTTSCSSCEEEEECSSCEEEEECS
T ss_pred EECCCCcEEEECCCCEEEeCCCC---CCEECC----CCCcChhhCEEEEeCCEEEEEECC
Confidence 34566678999999999999763 355552 3489999999999877 9998 54
No 2
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=95.92 E-value=0.015 Score=51.84 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=39.2
Q ss_pred ceEEEEec-----ceeEeeecCeEEEccCCCCCccceecCCCCCCccccccceEEeec--cc-eeEEe
Q 004452 688 AFAILYGR-----HSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFV--KS-LFIKI 747 (753)
Q Consensus 688 alAvL~G~-----~~~y~mr~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~--~d-FyI~i 747 (753)
.+|.|.-. ...|.+...+++|||+.. .||=|. ....|||+||.|.+. .. |||+=
T Consensus 3 ~wg~L~~~~~~~~~~~~~l~~~~~~iGR~~~---~di~l~---~~~~vSr~Ha~i~~~~~~~~~~l~D 64 (116)
T 1lgp_A 3 PWGRLLRLGAEEGEPHVLLRKREWTIGRRRG---CDLSFP---SNKLVSGDHCRIVVDEKSGQVTLED 64 (116)
T ss_dssp CCEEECCTTCCSSSCCEEECSSEEEEESSTT---SSEECT---TCTTSCTTCEEEEECTTTCCEEEEE
T ss_pred CEEEEEEeCCCCCccEEEECCCCEEECCCCC---CCEEeC---CCCCCChhHeEEEEECCCCeEEEEE
Confidence 45655433 347889999999999984 455552 235899999999997 33 99985
No 3
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=95.54 E-value=0.023 Score=51.55 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=41.1
Q ss_pred CceEEEEe---cceeEeeecCeEEEccCCCCCccceecCCCCCCccccccceEEeeccc-eeEE-ec
Q 004452 687 GAFAILYG---RHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS-LFIK-IG 748 (753)
Q Consensus 687 ~alAvL~G---~~~~y~mr~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d-FyI~-ig 748 (753)
..|-++.| .--+|.+....++|||+.. .||-|. ...|||+||.|.+... |||+ .|
T Consensus 13 ~~L~v~~~~~~~g~~~~l~~~~~~IGR~~~---~di~l~----d~~VSr~Ha~i~~~~~~~~l~Dl~ 72 (128)
T 1r21_A 13 RRLVTIKRSGVDGPHFPLSLSTCLFGRGIE---CDIRIQ----LPVVSKQHCKIEIHEQEAILHNFS 72 (128)
T ss_dssp EEEEEEEETTEEEEEEECCSSEEEEESSTT---SSEECC----CTTSCTTCEEEEECSSCEEECCCC
T ss_pred eEEEEEeCCCCCceEEEECCCCEEECCCCC---CCEEEC----CCCCChhHEEEEEECCEEEEEECC
Confidence 45566664 2456889899999999875 455553 2389999999999877 9998 43
No 4
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=95.48 E-value=0.028 Score=52.78 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=41.8
Q ss_pred CceEEEEec--ceeEeeecCeEEEccCCCCCccceecCCCCCCccccccceEEeeccc-eeEE-ec
Q 004452 687 GAFAILYGR--HSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS-LFIK-IG 748 (753)
Q Consensus 687 ~alAvL~G~--~~~y~mr~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d-FyI~-ig 748 (753)
..|-|+.|. -.+|.+....++|||... .||-|. -..|||+||.|.+... |||+ .|
T Consensus 47 ~~L~v~~G~~~g~~~~L~~~~~~IGR~~~---~di~l~----d~~VSr~Ha~I~~~~~~~~l~Dlg 105 (143)
T 2kb3_A 47 ALLVVKRGPNAGARFLLDQPTTTAGRHPE---SDIFLD----DVTVSRRHAEFRINEGEFEVVDVG 105 (143)
T ss_dssp EEEEEEESTTTTCEEEECSSEEEESSCTT---CSBCCC----CSSCCSSSEEEEEETTEEEEEESC
T ss_pred EEEEEEeCCCCCeEEEeCCCCeeccCCCC---CCEEeC----CCCcChhhEEEEEECCEEEEEECC
Confidence 346666664 468999999999999864 344442 3589999999999777 9998 43
No 5
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=95.40 E-value=0.015 Score=52.10 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=34.9
Q ss_pred eeEeeec-CeEEEccCCCCCccceecCCCCCCccccccceEEeeccc-eeEE-ec
Q 004452 697 SKHYIKK-PEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS-LFIK-IG 748 (753)
Q Consensus 697 ~~y~mr~-~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d-FyI~-ig 748 (753)
.+|.+.. ..++|||+...+ ||-|. -..|||+||.|.+..+ |||+ .|
T Consensus 25 ~~~~l~~~~~~~iGR~~~~~--di~l~----d~~vSr~Ha~i~~~~~~~~l~Dl~ 73 (118)
T 1uht_A 25 DALDYKPGSTIRVGRIVRGN--EIAIK----DAGISTKHLRIESDSGNWVIQDLG 73 (118)
T ss_dssp CBCCBCTTCCEEEESSSTTC--SEECC----SSSSCTTCEEEEECSSSEEEECCC
T ss_pred cEEEECCCCEEEEcCCCCCC--CEEeC----CCCCchHHeEEEEECCEEEEEECC
Confidence 4677775 689999996544 44442 3679999999999877 9998 54
No 6
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=95.40 E-value=0.037 Score=49.48 Aligned_cols=55 Identities=22% Similarity=0.337 Sum_probs=42.0
Q ss_pred CceEEEEec--ceeEeeecCeEEEccCCCCCccceecCCCCCCccccccceEEeeccc-eeEE-ec
Q 004452 687 GAFAILYGR--HSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS-LFIK-IG 748 (753)
Q Consensus 687 ~alAvL~G~--~~~y~mr~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d-FyI~-ig 748 (753)
..|-++.|. -.+|.+...+++|||+.. .||-|. ...|||+||.|.+... |||+ .|
T Consensus 12 ~~L~v~~g~~~g~~~~l~~~~~~IGR~~~---~di~l~----d~~vSr~Ha~i~~~~~~~~l~Dl~ 70 (115)
T 2xt9_B 12 ALLVVKRGPNAGSRFLLDQPTTSAGRHPD---SDIFLD----DVTVSRRHAEFRLEGGEFQVVDVG 70 (115)
T ss_dssp EEEEEEESTTTTCEEEECSSEEEEESSTT---SSEECC----STTSCSSCEEEEEETTEEEEEECS
T ss_pred EEEEEEeCCCCCeEEEECCCCEEECCCCC---CCEEeC----CcccChhheEEEEECCEEEEEECC
Confidence 445666665 467899999999999974 455553 2589999999999877 9998 43
No 7
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=95.31 E-value=0.028 Score=51.91 Aligned_cols=46 Identities=22% Similarity=0.061 Sum_probs=34.2
Q ss_pred eEeee-cCeEEEccCCCCCccceecCCCCCCccccccceEEeec-cc-eeEE
Q 004452 698 KHYIK-KPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFV-KS-LFIK 746 (753)
Q Consensus 698 ~y~mr-~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~-~d-FyI~ 746 (753)
+|.+. ..+++|||+.. .||-|........|||+||.|.+. .. |||+
T Consensus 21 ~~~l~~~~~~~IGR~~~---~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~ 69 (138)
T 2pie_A 21 WLLLEDGCEVTVGRGFG---VTYQLVSKICPLMISRNHCVLKQNPEGQWTIM 69 (138)
T ss_dssp BEEECTTCCEEEESSSS---SSEECCCSSCTTSSCSSCEEEEECTTSCEEEE
T ss_pred EEEecCCCeEEECCCCC---CCEEeCCCCcCCCCChhHeEEEEcCCCcEEEE
Confidence 56666 77899999983 566664333335699999999995 43 9998
No 8
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=95.30 E-value=0.026 Score=54.32 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=42.4
Q ss_pred CceEEEEec--ceeEeeecCeEEEccCCCCCccceecCCCCCCccccccceEEeeccc-eeEE-ec
Q 004452 687 GAFAILYGR--HSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS-LFIK-IG 748 (753)
Q Consensus 687 ~alAvL~G~--~~~y~mr~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d-FyI~-ig 748 (753)
..|-|+.|. -.+|.+....++|||... -||-|. ...|||+||.|.+..+ |||+ .|
T Consensus 56 ~~L~v~~G~~~g~~~~L~~~~~~IGR~~~---~di~l~----d~~VSr~HA~I~~~~~~~~l~Dlg 114 (162)
T 2kfu_A 56 ALLVVKRGPNAGSRFLLDQAITSAGRHPD---SDIFLD----DVTVSRRHAEFRLENNEFNVVDVG 114 (162)
T ss_dssp CEEEEEESTTCSCEEETTSSEEEEESCSS---SSEEST----TTSSSSCSEEEEEETTEEEEECCC
T ss_pred EEEEEEeCCCCCeEEEECCCCEEECCCCC---CCEEEC----CCCcChhhEEEEEECCEEEEEECC
Confidence 345667764 368999999999999864 455553 3589999999999877 9998 54
No 9
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=95.21 E-value=0.03 Score=49.28 Aligned_cols=52 Identities=19% Similarity=0.327 Sum_probs=36.6
Q ss_pred eEEEEec--ceeEeeec-CeEEEccCCCCCccceecCCCCCCccccccceEEeecc-c-eeEE
Q 004452 689 FAILYGR--HSKHYIKK-PEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVK-S-LFIK 746 (753)
Q Consensus 689 lAvL~G~--~~~y~mr~-~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~-d-FyI~ 746 (753)
|-++.|. -.+|.+.. +.++|||+..++ ||-|. -..|||+||.|.+.. . |||+
T Consensus 7 L~v~~G~~~g~~~~l~~~~~~~iGR~~~~~--di~l~----d~~vSr~Ha~i~~~~~~~~~l~ 63 (106)
T 3gqs_A 7 LKVLAGANIGAEFHLDSGKTYIVGSDPQVA--DIVLS----DMSISRQHAKIIIGNDNSVLIE 63 (106)
T ss_dssp EEECC-CCTTCEEEECTTCEEEEESCTTTC--SEECC----CTTSCSSCEEEEECTTSCEEEE
T ss_pred EEEEeCCCCcEEEEECCCCEEEEeECCCcC--CEEeC----CCCcchhhcEEEECCCCcEEEE
Confidence 4555655 34677776 468999997544 44442 257999999999984 4 9998
No 10
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=95.21 E-value=0.027 Score=51.21 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=28.0
Q ss_pred eEEEccCCCCCccceecCCCCCCccccccceEEeec-cc-eeEE
Q 004452 705 EVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFV-KS-LFIK 746 (753)
Q Consensus 705 eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~-~d-FyI~ 746 (753)
.++|||+.. .||-|. . .+.|||+||.|.+. .. |||+
T Consensus 37 ~~~IGR~~~---~di~l~--~-~~~vSr~Ha~i~~~~~g~~~l~ 74 (127)
T 1g6g_A 37 VWTFGRNPA---CDYHLG--N-ISRLSNKHFQILLGEDGNLLLN 74 (127)
T ss_dssp EEEEESSTT---SSEECC--S-CTTSCSSCEEEEECTTSCEEEE
T ss_pred CEEECCCCC---CCEEeC--C-CCCCChhHeEEEECCCCcEEEE
Confidence 899999986 466663 2 23699999999995 44 9998
No 11
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=94.97 E-value=0.022 Score=52.65 Aligned_cols=53 Identities=23% Similarity=0.344 Sum_probs=38.4
Q ss_pred ceEEEEecce--eEeeecC-eEEEccCCCCCccceecCCCCCCccccccceEEeecc--c-eeEE
Q 004452 688 AFAILYGRHS--KHYIKKP-EVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVK--S-LFIK 746 (753)
Q Consensus 688 alAvL~G~~~--~y~mr~~-eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~--d-FyI~ 746 (753)
.|-++.|... +|.+... .++|||+...+ ||-|. -..|||+||.|.+.. + |||+
T Consensus 36 ~L~v~~g~~~g~~~~l~~~~~~~IGR~~~~~--di~l~----d~~VSr~Ha~i~~~~~~~~~~l~ 94 (140)
T 2jpe_A 36 HLDVVKGDKLIEKLIIDEKKYYLFGRNPDLC--DFTID----HQSCSRVHAALVYHKHLKRVFLI 94 (140)
T ss_dssp BEEEESSSSEEEEECCSSCSBCCBSSCTTTS--SSCCC----CSSSCTTSBEEEEBSSSCCEEEE
T ss_pred EEEEEcCCCcceEEEeCCCCeEEecCCCccC--CEEeC----CCCcChhheEEEEECCCCcEEEE
Confidence 3566666543 6777775 59999988644 34332 347999999999997 4 9998
No 12
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=94.93 E-value=0.023 Score=53.25 Aligned_cols=52 Identities=8% Similarity=0.063 Sum_probs=36.3
Q ss_pred EecceeEeeecCeEEEccCCCCCccceecCC-----CCCCccccccceEEeeccc------eeEEe
Q 004452 693 YGRHSKHYIKKPEVLLGRATEDVVVDIDLGR-----EGRTNKISRRQVYNVFVKS------LFIKI 747 (753)
Q Consensus 693 ~G~~~~y~mr~~eIviGR~T~~~~VDIDLs~-----EGpa~kISRrQA~Ikl~~d------FyI~i 747 (753)
.+..-.|.+....++|||+.. .||=|.. ......|||+||.|....+ |||+=
T Consensus 37 ~~~~~~i~L~~~~~~IGR~~~---~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D 99 (149)
T 1gxc_A 37 QDGFANLECVNDNYWFGRDKS---CEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIED 99 (149)
T ss_dssp STTCCCEEECSSEEEEESSTT---CSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEEECCCCEEecCCCC---CCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEE
Confidence 355566889999999999872 3444421 1123359999999999864 88873
No 13
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=94.86 E-value=0.038 Score=51.22 Aligned_cols=54 Identities=15% Similarity=0.274 Sum_probs=41.8
Q ss_pred CCceEEEEecc---eeEeeecCeEEEccCCCCCccceecCCCCCCccccccceEEeecc--c-eeEE
Q 004452 686 HGAFAILYGRH---SKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVK--S-LFIK 746 (753)
Q Consensus 686 ~~alAvL~G~~---~~y~mr~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~--d-FyI~ 746 (753)
.+.|-|+.|.. .+|.+...+++|||+.. .||-|. -..|||+||.|.+.. + |||+
T Consensus 24 ~g~L~v~~g~~~~g~~~~L~~~~~~IGR~~~---~di~l~----d~~VSr~HA~i~~~~~~~~~~l~ 83 (132)
T 3va4_A 24 IGQLRLFSGTHGPERDFPLYLGKNVVGRSPD---CSVALP----FPSISKQHAVIEISAWNKAPILQ 83 (132)
T ss_dssp SEEEEECCBTTBSCEEEEECSEEEEEESSTT---SSEECC----CTTSCTTCEEEEECSTTSCCEEE
T ss_pred cEEEEEEeCCCCCceEEEECCCCEEEccCCC---CCEEeC----CCCcChhHEEEEEEcCCCEEEEE
Confidence 35566777765 78999999999999875 355553 248999999999973 3 9998
No 14
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=94.50 E-value=0.037 Score=53.23 Aligned_cols=49 Identities=14% Similarity=0.283 Sum_probs=38.5
Q ss_pred EecceeEeeecCeEEEccCCCCCccceecCCCCCCccccccceEEeeccc-eeEE-ec
Q 004452 693 YGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS-LFIK-IG 748 (753)
Q Consensus 693 ~G~~~~y~mr~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d-FyI~-ig 748 (753)
.|.-.+|.+...+++|||+.. .||-|. -..|||+||+|.+..+ |||+ .+
T Consensus 74 ~g~g~~~~L~~~~~~IGR~~~---~dI~L~----d~~VSr~HA~I~~~~~~~~l~Dlg 124 (157)
T 3oun_A 74 DGSGRTYQLREGSNIIGRGQD---AQFRLP----DTGVSRRHLEIRWDGQVALLADLN 124 (157)
T ss_dssp TTTCCEEECCSEEEEEESSTT---CSEECC----CTTSCTTCEEEEECSSCEEEEECS
T ss_pred CCCCeEEEECCCcEEEEeCCC---CCEEeC----CCCcChhHEEEEEECCEEEEEECC
Confidence 455678999999999999764 355552 3489999999999877 9998 53
No 15
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=94.45 E-value=0.051 Score=50.65 Aligned_cols=45 Identities=22% Similarity=0.083 Sum_probs=32.1
Q ss_pred Eee-ecCeEEEccCCCCCccceecCCCCCCccccccceEEeec-cc-eeEE
Q 004452 699 HYI-KKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFV-KS-LFIK 746 (753)
Q Consensus 699 y~m-r~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~-~d-FyI~ 746 (753)
|.+ ...+++|||+.. .||-|........|||+||.|.+. .. |||+
T Consensus 30 ~~l~~~~~~~IGR~~~---~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~ 77 (145)
T 2csw_A 30 LLLEDGCEVTVGRGFG---VTYQLVSKICPLMISRNHCVLKQNPEGQWTIM 77 (145)
T ss_dssp EECCTTCCEEEESSTT---SSEECCCSSCGGGSCTTCEEEEECTTSCEEEE
T ss_pred EEeCCCCcEEECCCCC---CCEEECCCCcCCCCChhHeEEEEcCCCeEEEE
Confidence 444 667899999983 566664322233599999999995 44 9998
No 16
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=93.94 E-value=0.061 Score=51.27 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=28.0
Q ss_pred eEEEccCCCCCccceecCCCCCCccccccceEEeec-cc-eeEE
Q 004452 705 EVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFV-KS-LFIK 746 (753)
Q Consensus 705 eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~-~d-FyI~ 746 (753)
.++|||+.. .||-|. . .+.|||+||.|.+. .. |||+
T Consensus 65 ~~~IGR~~~---~di~l~--d-~~~vSr~Ha~I~~~~~g~~~l~ 102 (164)
T 1g3g_A 65 VWTFGRNPA---CDYHLG--N-ISRLSNKHFQILLGEDGNLLLN 102 (164)
T ss_dssp EEEEESSSS---SSEECC--C-CTTTTSSCEEEEECSTTCEEEE
T ss_pred cEEECCCCC---CCEEeC--C-cCCcChhHEEEEECCCCCEEEE
Confidence 899999876 566663 2 33699999999996 44 9998
No 17
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=93.85 E-value=0.15 Score=47.06 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=39.4
Q ss_pred CCceEEEEec--ceeEeeecCeEEEccCCCCCccceecCCCCCCccccccceEEeecc--c----eeEE
Q 004452 686 HGAFAILYGR--HSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVK--S----LFIK 746 (753)
Q Consensus 686 ~~alAvL~G~--~~~y~mr~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~--d----FyI~ 746 (753)
..++-++.+. ..+|.+....++|||+.. .||-| +...|||+||+|.+.. + |||+
T Consensus 10 ~~~~lvv~~~~~~~~~~l~~~~~~IGR~~~---~di~l----~d~~VSr~Ha~I~~~~~~~g~~~~~l~ 71 (131)
T 3hx1_A 10 QEHILIILDDAGRREVLLTETFYTIGRSPR---ADIRI----KSQFVSRIHAVLVRKSSDDVQAAYRII 71 (131)
T ss_dssp CEEEEEEEETTEEEEEEECSSEEEEESSTT---SSEEC----CCSSSCTTCEEEEEC------CCEEEE
T ss_pred cceEEEEECCCCcEEEEECCCCEEECCCCC---CCEEE----CCCCcChhheEEEEEccCCCceEEEEE
Confidence 4556666654 357889999999999976 45555 2246999999999872 2 8888
No 18
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=93.73 E-value=0.084 Score=48.78 Aligned_cols=52 Identities=17% Similarity=0.301 Sum_probs=38.1
Q ss_pred ceEEEEec--ceeEeeecC-----eEEEccCCCCCccceecCCCCCCccccccceEEeeccc---eeEE
Q 004452 688 AFAILYGR--HSKHYIKKP-----EVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS---LFIK 746 (753)
Q Consensus 688 alAvL~G~--~~~y~mr~~-----eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d---FyI~ 746 (753)
.|-|+.|. -.+|.+... .++|||+.. -||-|. -..|||+||.|.+..+ |||+
T Consensus 9 ~L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~~~---~di~l~----d~~VSr~Ha~i~~~~~~~~~~l~ 70 (139)
T 1mzk_A 9 FLEVIAGPAIGLQHAVNSTSSSKLPVKLGRVSP---SDLALK----DSEVSGKHAQITWNSTKFKWELV 70 (139)
T ss_dssp EEEECSSTTCSCEEEECTTCSTTCSEEEESSSS---CSEECC----CTTSSSEEEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCCeEEEecCCCCccceEEeeCCCC---CCEEeC----CCCCChHHcEEEEECCCCEEEEE
Confidence 45566664 346777764 799999986 355553 3469999999999874 9998
No 19
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.57 E-value=0.17 Score=53.58 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=37.8
Q ss_pred cceeEeeecCeEEEccCCCCCccceecCCCCCCccccccceEEeeccc-eeEE-ec
Q 004452 695 RHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS-LFIK-IG 748 (753)
Q Consensus 695 ~~~~y~mr~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d-FyI~-ig 748 (753)
.-.+|.+.+..++|||+.. .||-|. ...|||+||.|.+..+ |||+ .|
T Consensus 297 ~g~~~~l~~~~~~iGR~~~---~di~l~----~~~vSr~Ha~i~~~~~~~~l~Dl~ 345 (388)
T 2ff4_A 297 SGRGYPLQAAATRIGRLHD---NDIVLD----SANVSRHHAVIVDTGTNYVINDLR 345 (388)
T ss_dssp TCCEEECCSSEEEEESSTT---SSEECC----CTTSCTTCEEEEECSSCEEEEECS
T ss_pred CCcEEEECCCCEEEecCCC---CeEEEC----CCccChhHeEEEEECCEEEEEECC
Confidence 4578999999999999875 355552 3679999999999877 9998 44
No 20
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=93.10 E-value=0.12 Score=48.83 Aligned_cols=44 Identities=23% Similarity=0.154 Sum_probs=36.9
Q ss_pred cceeEeeecCeEEEccCCCCCccceecCCCCCCccccccceEEeeccc
Q 004452 695 RHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS 742 (753)
Q Consensus 695 ~~~~y~mr~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d 742 (753)
..+.|+++.-.++|||...+...||=|. | ..|||+||+|....+
T Consensus 52 ~~lvy~L~~g~t~IGR~~~~~~~DI~L~--~--~~Vs~~H~~i~~~~~ 95 (154)
T 4ejq_A 52 ECLLYYIKDGITRVGREDGERRQDIVLS--G--HFIKEEHCVFRSDSR 95 (154)
T ss_dssp SEEEEECCSEEEEEECSSCSSCCSEECC--C--TTCCSEEEEEEEECT
T ss_pred ceEEEEeCCCCEEEcCCCCCCCCCEEEC--C--CCcccccEEEEEecC
Confidence 4578999999999999988777888884 3 579999999999754
No 21
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=93.08 E-value=0.11 Score=48.03 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=34.8
Q ss_pred ceeEeeecCeEEEccCCCCCccceecCCCCCCccccccceEEeec-cc-eeEE-ec
Q 004452 696 HSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFV-KS-LFIK-IG 748 (753)
Q Consensus 696 ~~~y~mr~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~-~d-FyI~-ig 748 (753)
.+.|+++. .++|||+.. .||-|. |+ .|||+||+|... .. +||+ .+
T Consensus 41 ~l~y~L~~-~t~IGR~~~---~DI~L~--~~--~Vs~~Ha~I~~~~~g~~~l~dl~ 88 (124)
T 3fm8_A 41 LLVYYLKE-HTLIGSANS---QDIQLC--GM--GILPEHCIIDITSEGQVMLTPQK 88 (124)
T ss_dssp CCEEECCS-EEEEESSTT---CSEECC--ST--TCCSSCEEEEECTTSCEEEEECT
T ss_pred eEEEECCC-CeEECCCCC---CCEEEC--CC--CeecceEEEEECCCCeEEEEECC
Confidence 36799987 599999875 577774 43 699999999985 33 9998 54
No 22
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=92.95 E-value=0.16 Score=45.71 Aligned_cols=47 Identities=9% Similarity=-0.033 Sum_probs=35.5
Q ss_pred ceeEeeecCeEEEccC-CCCCccceecCCCCCCccccccceEEeeccc-eeEE-ec
Q 004452 696 HSKHYIKKPEVLLGRA-TEDVVVDIDLGREGRTNKISRRQVYNVFVKS-LFIK-IG 748 (753)
Q Consensus 696 ~~~y~mr~~eIviGR~-T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d-FyI~-ig 748 (753)
-..|.+...+++|||. +. ..||-|. ...|||+||.|..... |||+ .+
T Consensus 28 ~~~~~L~~~~~~IGr~r~~--~~di~l~----~~~vSr~Ha~i~~~~~~~~l~dl~ 77 (120)
T 1wln_A 28 PKLYRLQLSVTEVGTEKFD--DNSIQLF----GPGIQPHHCDLTNMDGVVTVTPRS 77 (120)
T ss_dssp CCEEECCSEEEECSSSCCS--TTCCCCC----CTTCCSSCEEEEESSSCEEEEESC
T ss_pred cEEEEECCCCEEECCCCCC--CCcEEEC----CCCCchhheEEEEcCCEEEEEECC
Confidence 4579999999999985 33 3445452 3579999999999877 9998 44
No 23
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=92.82 E-value=0.2 Score=46.21 Aligned_cols=46 Identities=24% Similarity=0.284 Sum_probs=30.7
Q ss_pred ceEEEEecce--eEeeec-CeEEEccCCCCCccceecCCCCCCccccccceEEeec
Q 004452 688 AFAILYGRHS--KHYIKK-PEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFV 740 (753)
Q Consensus 688 alAvL~G~~~--~y~mr~-~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~ 740 (753)
.|-||.|... ++.+.. ..++|||+.. .||=| + -..|||+||+|.++
T Consensus 22 ~L~v~k~g~~~~~~~L~~~~~~~IGR~~~---~di~l--~--~~~VSr~HA~I~~r 70 (130)
T 4h87_A 22 SLETLKGGTILGTRSLKGTSYCLFGRLSG---CDVCL--E--HPSVSRYHAVLQHR 70 (130)
T ss_dssp EEEEEETTEEEEEEECTTCSEEEEESSTT---SSEEC--C--CTTSCSSCEEEEEB
T ss_pred EEEEEECCeeeeeEEeCCCceEEEcCCcC---CCEEe--C--CCCcchhcEEEEEe
Confidence 4667777643 456654 4589999863 45555 2 24699999999763
No 24
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=91.70 E-value=0.11 Score=49.17 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=28.1
Q ss_pred eeEeeecCe--EEEccCCCCCccceecCCCCCCccccccceEEeecc
Q 004452 697 SKHYIKKPE--VLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVK 741 (753)
Q Consensus 697 ~~y~mr~~e--IviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~ 741 (753)
..|++.... ++|||+.. .||=|. . ..|||+||.|.+..
T Consensus 18 ~~i~L~~~~~~~~IGR~~~---~di~l~--d--~~VSr~Ha~I~~~~ 57 (158)
T 1dmz_A 18 ESLEIQQGVNPFFIGRSED---CNCKIE--D--NRLSRVHCFIFKKR 57 (158)
T ss_dssp CCEEETTSCSCEEEESSTT---SSEECC--C--TTSCSSSEEEEEEE
T ss_pred eEEEEcCCCceEEECCCCC---CCEEeC--C--CCcChHHeEEEEec
Confidence 467777666 99999863 355552 2 38999999999875
No 25
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=91.50 E-value=0.32 Score=46.45 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=37.4
Q ss_pred ceEEEEecc------eeEee-ecCeEEEccCCC------------CCccceecCCCCCCccccccceEEeeccc-----e
Q 004452 688 AFAILYGRH------SKHYI-KKPEVLLGRATE------------DVVVDIDLGREGRTNKISRRQVYNVFVKS-----L 743 (753)
Q Consensus 688 alAvL~G~~------~~y~m-r~~eIviGR~T~------------~~~VDIDLs~EGpa~kISRrQA~Ikl~~d-----F 743 (753)
-|-|++|.. -+|.+ .+..++|||+.. ....||-|. -..|||+||+|.+..+ |
T Consensus 33 ~l~v~k~g~~~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~----~~~VSr~HA~I~~~~~~~~~~~ 108 (158)
T 3els_A 33 ELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIP----EETSSKQHCVIQFRNVRGILKC 108 (158)
T ss_dssp EEEEEEGGGGGGCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEEC----CTTSCSSCEEEEEEEETTEEEE
T ss_pred EEEEEeCCccCcccceEEEecCCCceEeccccccccccccccccccccCCEEcC----CCCCCcccEEEEEEccCCeeEE
Confidence 366776643 14545 456789999963 133566552 3489999999999754 8
Q ss_pred eEE
Q 004452 744 FIK 746 (753)
Q Consensus 744 yI~ 746 (753)
||+
T Consensus 109 ~l~ 111 (158)
T 3els_A 109 YVM 111 (158)
T ss_dssp EEE
T ss_pred EEE
Confidence 888
No 26
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=91.39 E-value=0.37 Score=45.08 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=32.6
Q ss_pred ceeEeee-cCeEEEccCCCCCccceecCCCCCCccccccceEEee--------ccc-eeEE
Q 004452 696 HSKHYIK-KPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVF--------VKS-LFIK 746 (753)
Q Consensus 696 ~~~y~mr-~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl--------~~d-FyI~ 746 (753)
-.+|.+. +.+++|||+.. .||-|. ...|||+||+|.+ ... |||+
T Consensus 29 g~~~~l~~~~~~~IGR~~~---~di~l~----d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~ 82 (151)
T 2jqj_A 29 EQKVEITNRNVTTIGRSRS---CDVILS----EPDISTFHAEFHLLQMDVDNFQRNLINVI 82 (151)
T ss_dssp EEEEEEECCSCEEEESSTT---SSEECC----CTTCCTTSEEEEEEEEEETTEEEEEEEEE
T ss_pred ceEEEEcCCCeEEeCCCCC---CCEEEC----CCCCccccCEEEEecccCCcCcCCEEEEE
Confidence 3466676 48999999973 456553 3469999999999 334 9998
No 27
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=89.99 E-value=0.17 Score=49.31 Aligned_cols=38 Identities=18% Similarity=0.376 Sum_probs=27.8
Q ss_pred eeEeeecCe--EEEccCCCCCccceecCCCCCCccccccceEEeecc
Q 004452 697 SKHYIKKPE--VLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVK 741 (753)
Q Consensus 697 ~~y~mr~~e--IviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~ 741 (753)
..|++.... ++|||+.. .||=| .. ..|||+||.|.+..
T Consensus 42 ~~i~L~~~~~~~~IGR~~~---~di~l--~d--~~VSr~HA~I~~~~ 81 (182)
T 1qu5_A 42 ESLEIQQGVNPFFIGRSED---CNCKI--ED--NRLSRVHCFIFKKR 81 (182)
T ss_dssp SCCCBTTCCSSEEESSSTT---SSSCC--CC--TTSCSSCEEEEEEC
T ss_pred eEEEEcCCCceEEECCCCC---CCEEE--CC--CCcChHHeEEEEec
Confidence 567777666 99999863 23434 22 38999999999875
No 28
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=87.94 E-value=0.82 Score=45.89 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=38.1
Q ss_pred ceEEEEecc------eeEee-ecCeEEEccCCC------------CCccceecCCCCCCccccccceEEeeccc-----e
Q 004452 688 AFAILYGRH------SKHYI-KKPEVLLGRATE------------DVVVDIDLGREGRTNKISRRQVYNVFVKS-----L 743 (753)
Q Consensus 688 alAvL~G~~------~~y~m-r~~eIviGR~T~------------~~~VDIDLs~EGpa~kISRrQA~Ikl~~d-----F 743 (753)
.|-|++|-. -+|.+ .+..++|||+.. ....||=|. -..|||+||+|.+..+ |
T Consensus 80 ~L~v~k~g~k~~~~i~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~----dp~VSR~HA~I~~~~~~~~~~~ 155 (205)
T 3elv_A 80 ELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIP----EETSSKQHCVIQFRNVRGILKC 155 (205)
T ss_dssp EEEEEEGGGCTTCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEEC----CTTSCTTCEEEEEEEETTEEEE
T ss_pred EEEEEeCCCcccccceEEEecCCCceeecccccccccccccccccCccceEEeC----CCCCCcccEEEEEecCCCceeE
Confidence 367777533 25666 568899999953 233566663 2469999999988742 8
Q ss_pred eEE
Q 004452 744 FIK 746 (753)
Q Consensus 744 yI~ 746 (753)
||.
T Consensus 156 ~l~ 158 (205)
T 3elv_A 156 YVM 158 (205)
T ss_dssp EEE
T ss_pred EEE
Confidence 988
No 29
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=85.06 E-value=0.92 Score=40.94 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=28.6
Q ss_pred ecCeEEEccCCCCCccceecCCCCCCccccccceEEeeccc---eeEE-ecc
Q 004452 702 KKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS---LFIK-IGH 749 (753)
Q Consensus 702 r~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d---FyI~-ig~ 749 (753)
....|+|||+..- .| .-+|+||+|+.|+.+.+ .+|+ +|-
T Consensus 21 ~g~~v~iGR~p~t-~I--------~DkrcSR~h~~L~~~~~~g~v~vk~lg~ 63 (102)
T 3kt9_A 21 HLEAVVIGRGPET-KI--------TDKKCSRQQVQLKAECNKGYVKVKQVGV 63 (102)
T ss_dssp BTCEEEECSSTTT-CC--------CCTTSCSSCEEEEEETTTTEEEEEECSS
T ss_pred CCCcEEeccCCcc-cc--------ccCcccCcceEEEEecCCCEEEEEECcC
Confidence 4556789999853 22 15799999999999865 4677 663
No 30
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=84.31 E-value=0.89 Score=41.70 Aligned_cols=48 Identities=27% Similarity=0.327 Sum_probs=33.2
Q ss_pred EecceeEee--ecCeEEEccCCCCCccceecCCCCCCccccccceEEeeccc---eeEE-ecc
Q 004452 693 YGRHSKHYI--KKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS---LFIK-IGH 749 (753)
Q Consensus 693 ~G~~~~y~m--r~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d---FyI~-ig~ 749 (753)
.|.+-+-.| ...+++|||.....-. -+|+||+|+.|+.+.+ +.++ +|-
T Consensus 16 ~~~~~~I~Lp~~~g~~viGR~p~t~I~---------DkrcSR~hv~L~ad~~~~~v~vk~lG~ 69 (110)
T 2brf_A 16 PGEAPPIFLPSDGQALVLGRGPLTQVT---------DRKCSRTQVELVADPETRTVAVKQLGV 69 (110)
T ss_dssp TTSSCCEECCSTTCCEEECSBTTTTBC---------CTTSCSSCEEEEEETTTTEEEEEECSS
T ss_pred CCCCCcEEeccCCCCEEEcCCCCcccc---------cccceeeeEEEEEecCCCEEEEEEccc
Confidence 344556666 4689999999843322 3799999999998755 4455 553
No 31
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=81.64 E-value=0.8 Score=47.98 Aligned_cols=59 Identities=12% Similarity=0.072 Sum_probs=38.3
Q ss_pred CceEEEEecceeEeeecCeEEEccCCCCCc---cceecCCCCCCccccccceEEeeccc------eeEE
Q 004452 687 GAFAILYGRHSKHYIKKPEVLLGRATEDVV---VDIDLGREGRTNKISRRQVYNVFVKS------LFIK 746 (753)
Q Consensus 687 ~alAvL~G~~~~y~mr~~eIviGR~T~~~~---VDIDLs~EGpa~kISRrQA~Ikl~~d------FyI~ 746 (753)
+.|.++.+..-.+.+...+.+|||+.+ +. .|.+++.......|||+||.|....+ +||+
T Consensus 11 g~l~~~~~~~~~~~l~~~~~~iGR~~~-~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~ 78 (419)
T 3i6u_A 11 ARLWALQDGFANLECVNDNYWFGRDKS-CEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIE 78 (419)
T ss_dssp EEEEECSSSSCCEEECSSEEEEESSTT-SSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEE
T ss_pred eEeeecCCCCCceEecCCCEEecCCCc-cCEEECCcccccccccccccccceEEEEEcCCCCceEEEEE
Confidence 444445554557899999999999954 22 12233322334789999999976522 7776
No 32
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=79.07 E-value=1.5 Score=42.75 Aligned_cols=43 Identities=23% Similarity=0.159 Sum_probs=37.0
Q ss_pred cceeEeeecCeEEEccCCCCCccceecCCCCCCccccccceEEeecc
Q 004452 695 RHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVK 741 (753)
Q Consensus 695 ~~~~y~mr~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~ 741 (753)
..+.||++.-.++|||...+...||=|. | ..|+++||+|....
T Consensus 82 ~~l~y~L~~g~t~VGr~~~~~~~dI~L~--G--~~I~~~Hc~i~~~~ 124 (184)
T 4egx_A 82 ECLLYYIKDGITRVGREDGERRQDIVLS--G--HFIKEEHCVFRSDS 124 (184)
T ss_dssp SCSEEECCSEEEEEECSSSSSCCSEECC--S--TTCCSEEEEEEEEC
T ss_pred ceEEEEECCCcCcCCCCCcCCCCeEEEC--c--cccccccEEEEEcC
Confidence 4568999999999999988888999995 4 56999999999864
No 33
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=78.46 E-value=2.8 Score=44.87 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=29.2
Q ss_pred eEeeecCeEEEccCCCCCccceecCCCCCCccccccceEEeec
Q 004452 698 KHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFV 740 (753)
Q Consensus 698 ~y~mr~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~ 740 (753)
+|+++..+.+|||.......+|=+ .-.-|||+||+|+++
T Consensus 15 r~~L~pg~YlIGR~~~~~~~lI~i----dD~SISRqHA~I~v~ 53 (325)
T 3huf_A 15 SRILFPGTYIVGRNVSDDSSHIQV----ISKSISKRHARFTIL 53 (325)
T ss_dssp CEEECSEEEEEESSCCCBTTEEEC----CCTTSCSSCEEEEEC
T ss_pred EEEecCCeEEECCCCCccCceeec----CCCCccccceEEEEe
Confidence 677777779999998864333333 456799999999986
No 34
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=72.59 E-value=3.1 Score=38.65 Aligned_cols=47 Identities=26% Similarity=0.344 Sum_probs=31.3
Q ss_pred ecceeEee--ecCeEEEccCCCCCccceecCCCCCCccccccceEEeeccc---eeEE-ecc
Q 004452 694 GRHSKHYI--KKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS---LFIK-IGH 749 (753)
Q Consensus 694 G~~~~y~m--r~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d---FyI~-ig~ 749 (753)
|.+-+-.| ...+++|||...-. | .-+|+||+|+.++.+.+ +.++ +|-
T Consensus 24 ~~~~~I~Lp~~~g~~viGRgp~t~-I--------~DkrcSR~qv~L~ad~~~~~v~vk~lG~ 76 (119)
T 1ujx_A 24 GGPPPIFLPSDGQALVLGRGPLTQ-V--------TDRKCSRNQVELIADPESRTVAVKQLGV 76 (119)
T ss_dssp SSCCCCCCCTTSCCEEESBBTTTT-B--------CCTTSCTTSEEEEEETTTTEEEEEECSS
T ss_pred CCCCcEEeccCCCCEEEcCCCCcc-c--------ccccccceeEEEEEecCCCEEEEEEccc
Confidence 33344455 36889999988322 1 24699999999998765 4455 553
No 35
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=51.88 E-value=9.8 Score=36.49 Aligned_cols=47 Identities=26% Similarity=0.345 Sum_probs=32.1
Q ss_pred ecceeEee--ecCeEEEccCCCCCccceecCCCCCCccccccceEEeeccc---eeEE-ecc
Q 004452 694 GRHSKHYI--KKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS---LFIK-IGH 749 (753)
Q Consensus 694 G~~~~y~m--r~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d---FyI~-ig~ 749 (753)
|.+-+-.| -..+++|||.-.-.-. -+|+||+|+.|+.+-+ +.|+ +|-
T Consensus 17 ~~~~~I~Lp~~~g~vvIGRgPet~It---------DkRcSR~qv~L~ad~~~g~V~Vk~lG~ 69 (143)
T 1yj5_C 17 GGPPPIFLPSDGQALVLGRGPLTQVT---------DRKCSRNQVELIADPESRTVAVKQLGV 69 (143)
T ss_dssp TSCCCEECCTTTCEEEECSBTTTTBC---------CSSSCSSCEEEEEETTTTEEEEEECSS
T ss_pred CCCCcEEeccCCCCEEEcCCCccccc---------cccccceeEEEEEecCCCeEEEEEccc
Confidence 44455666 3689999998832211 3589999999998755 4466 553
No 36
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=38.68 E-value=27 Score=31.85 Aligned_cols=46 Identities=9% Similarity=0.144 Sum_probs=30.7
Q ss_pred ecceeEeeecCeEEEccCCCCCccceecCCCCCCccccccceEEeeccc-eeEE
Q 004452 694 GRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQVYNVFVKS-LFIK 746 (753)
Q Consensus 694 G~~~~y~mr~~eIviGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~d-FyI~ 746 (753)
|+-..-+-...-..|||+.. . ++=| ++..|||.||+|-.... +|+-
T Consensus 11 ~~p~v~l~~~~~~rIGR~~~-~--~l~L----ddpsVs~~HAti~~~~~G~~~l 57 (102)
T 3uv0_A 11 GLPAILLKADTIYRIGRQKG-L--EISI----ADESMELAHATACILRRGVVRL 57 (102)
T ss_dssp TSCCEECCTTCCEEEESSTT-S--TEEC----CCTTSCTTCEEEEEEETTEEEE
T ss_pred CcccEEeecCcEEEEcCCCC-C--cEEE----CCcccccceEEEEecCCceEEE
Confidence 44444445555667999933 2 3333 46799999999988766 7773
No 37
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=24.77 E-value=71 Score=27.38 Aligned_cols=28 Identities=36% Similarity=0.542 Sum_probs=20.5
Q ss_pred hhHhhhhcccHHHHHHHHHHHhhHHH------HHHHHhc
Q 004452 652 YEQEVSKYQHEDTRRAIIRLEQGAHS------YMQRAIL 684 (753)
Q Consensus 652 ~~~Elsr~q~~~~kr~I~rLE~e~~~------~~~~~~~ 684 (753)
++.||. +-|..|++||+++.. |+|.+.+
T Consensus 31 iEqeLe-----~Ck~sIrrLE~evn~ErFrmIYLQTlLA 64 (72)
T 1k1f_A 31 IEQELE-----RAKASIRRLEQEVNQERFRMIYLQTLLA 64 (72)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 466664 468899999999985 5666554
Done!