Query 004453
Match_columns 753
No_of_seqs 472 out of 2998
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 23:41:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0234 Fructose-6-phosphate 2 100.0 3.1E-74 6.8E-79 625.3 36.0 399 346-753 23-431 (438)
2 PTZ00322 6-phosphofructo-2-kin 100.0 7.3E-66 1.6E-70 605.9 44.2 388 350-752 214-637 (664)
3 PF01591 6PF2K: 6-phosphofruct 100.0 7.1E-53 1.5E-57 431.9 17.4 213 342-559 2-222 (222)
4 PRK13463 phosphatase PhoE; Pro 100.0 3.2E-33 6.8E-38 284.3 20.2 188 559-750 2-197 (203)
5 PRK15004 alpha-ribazole phosph 100.0 3.8E-33 8.2E-38 282.5 20.7 187 560-750 1-194 (199)
6 PRK14116 gpmA phosphoglyceromu 100.0 2E-33 4.4E-38 290.9 18.8 189 559-749 1-226 (228)
7 PRK14119 gpmA phosphoglyceromu 100.0 8.3E-33 1.8E-37 286.2 19.4 188 559-748 1-225 (228)
8 PRK01112 phosphoglyceromutase; 100.0 1.3E-32 2.9E-37 284.8 20.1 186 559-748 1-224 (228)
9 PRK14117 gpmA phosphoglyceromu 100.0 1.7E-32 3.7E-37 284.3 20.4 190 559-750 1-227 (230)
10 PRK14118 gpmA phosphoglyceromu 100.0 4.5E-32 9.7E-37 280.7 19.6 181 560-742 1-218 (227)
11 PRK01295 phosphoglyceromutase; 100.0 9.1E-32 2E-36 274.5 19.9 183 559-743 2-196 (206)
12 TIGR03848 MSMEG_4193 probable 100.0 1.5E-31 3.3E-36 271.7 20.2 184 561-750 1-197 (204)
13 PRK14115 gpmA phosphoglyceromu 100.0 3.3E-31 7.2E-36 277.5 22.1 192 560-753 1-229 (247)
14 PRK03482 phosphoglycerate muta 100.0 3.1E-31 6.8E-36 271.5 21.3 187 559-749 1-199 (215)
15 COG0406 phoE Broad specificity 100.0 3.1E-31 6.7E-36 269.5 20.5 183 559-743 2-191 (208)
16 PRK14120 gpmA phosphoglyceromu 100.0 3E-31 6.5E-36 278.0 20.8 184 557-742 2-220 (249)
17 TIGR03162 ribazole_cobC alpha- 100.0 1.8E-31 3.9E-36 264.2 17.5 170 562-737 1-177 (177)
18 PRK13462 acid phosphatase; Pro 100.0 5.1E-31 1.1E-35 268.4 20.6 184 556-750 2-192 (203)
19 TIGR01258 pgm_1 phosphoglycera 100.0 6.2E-31 1.3E-35 275.1 21.4 190 560-751 1-227 (245)
20 PRK07238 bifunctional RNase H/ 100.0 4.8E-29 1E-33 275.7 22.0 189 558-750 170-366 (372)
21 PF00300 His_Phos_1: Histidine 99.9 2.5E-27 5.5E-32 227.6 13.4 150 561-712 1-158 (158)
22 PTZ00123 phosphoglycerate muta 99.9 5.5E-26 1.2E-30 236.6 19.6 176 572-749 1-213 (236)
23 smart00855 PGAM Phosphoglycera 99.9 2.2E-26 4.7E-31 223.3 13.8 146 561-712 1-155 (155)
24 KOG0235 Phosphoglycerate mutas 99.9 5.3E-26 1.2E-30 230.7 15.6 183 557-741 3-200 (214)
25 COG0588 GpmA Phosphoglycerate 99.9 1.5E-25 3.3E-30 223.5 13.8 185 559-745 1-222 (230)
26 PTZ00122 phosphoglycerate muta 99.8 1.7E-20 3.7E-25 201.7 16.3 167 560-750 103-286 (299)
27 cd07067 HP_PGM_like Histidine 99.8 1.4E-20 3E-25 181.5 14.1 135 561-741 1-143 (153)
28 cd05816 CBM20_DPE2_repeat2 Dis 99.8 4.3E-19 9.2E-24 161.0 10.7 93 33-126 2-94 (99)
29 PF00686 CBM_20: Starch bindin 99.8 1.2E-18 2.7E-23 156.8 8.5 90 30-123 1-94 (96)
30 cd07040 HP Histidine phosphata 99.8 9.4E-18 2E-22 160.5 14.6 132 561-741 1-143 (153)
31 cd05807 CBM20_CGTase CGTase, C 99.7 2.8E-17 6.1E-22 149.5 9.6 93 29-124 1-97 (101)
32 cd05820 CBM20_novamyl Novamyl 99.7 1E-16 2.2E-21 146.6 10.1 97 30-129 2-102 (103)
33 TIGR00249 sixA phosphohistidin 99.7 2.2E-15 4.7E-20 147.1 17.4 137 560-742 1-141 (152)
34 cd05467 CBM20 The family 20 ca 99.7 3.9E-16 8.5E-21 139.9 10.4 85 32-119 1-87 (96)
35 cd05810 CBM20_alpha_MTH Glucan 99.6 3.6E-16 7.8E-21 141.4 8.9 87 32-119 2-89 (97)
36 COG0529 CysC Adenylylsulfate k 99.6 1.2E-15 2.7E-20 149.5 13.1 117 347-475 19-135 (197)
37 PRK06193 hypothetical protein; 99.6 2.5E-15 5.5E-20 153.1 14.5 129 558-718 41-176 (206)
38 cd05817 CBM20_DSP Dual-specifi 99.6 9.2E-16 2E-20 139.4 9.1 82 33-116 2-83 (100)
39 cd05809 CBM20_beta_amylase Bet 99.6 1.8E-15 3.9E-20 137.3 10.2 87 30-118 2-90 (99)
40 PF01583 APS_kinase: Adenylyls 99.6 3.2E-15 7E-20 146.1 12.5 116 350-477 1-116 (156)
41 cd05808 CBM20_alpha_amylase Al 99.6 1.9E-15 4.2E-20 135.4 10.0 83 32-118 2-84 (95)
42 PRK10848 phosphohistidine phos 99.6 3.2E-14 6.9E-19 139.9 17.8 135 560-740 1-139 (159)
43 cd05811 CBM20_glucoamylase Glu 99.6 6E-15 1.3E-19 135.2 10.8 92 28-123 4-99 (106)
44 COG0645 Predicted kinase [Gene 99.6 9.7E-15 2.1E-19 142.8 11.7 143 351-519 1-149 (170)
45 cd05814 CBM20_Prei4 Prei4, N-t 99.6 3.6E-15 7.8E-20 140.0 7.8 83 33-116 3-94 (120)
46 cd05815 CBM20_DPE2_repeat1 Dis 99.6 8.5E-15 1.9E-19 133.2 10.1 85 33-120 2-89 (101)
47 PF13671 AAA_33: AAA domain; P 99.6 5.1E-14 1.1E-18 133.9 14.9 139 353-507 1-141 (143)
48 PLN02950 4-alpha-glucanotransf 99.6 1.2E-14 2.5E-19 175.7 11.6 102 26-129 148-249 (909)
49 KOG4754 Predicted phosphoglyce 99.5 4.7E-14 1E-18 141.0 12.7 166 559-724 14-208 (248)
50 COG2062 SixA Phosphohistidine 99.5 1E-13 2.2E-18 136.0 14.5 142 559-742 1-143 (163)
51 cd05818 CBM20_water_dikinase P 99.5 3.5E-14 7.5E-19 127.3 10.0 84 31-121 2-85 (92)
52 cd05813 CBM20_genethonin_1 Gen 99.5 4E-14 8.7E-19 127.4 10.0 79 32-115 2-80 (95)
53 KOG4609 Predicted phosphoglyce 99.5 2.1E-13 4.5E-18 136.2 11.7 164 558-748 93-268 (284)
54 cd05806 CBM20_laforin Laforin 99.5 1.2E-13 2.6E-18 127.7 9.2 83 32-117 2-96 (112)
55 KOG3734 Predicted phosphoglyce 99.4 6.3E-13 1.4E-17 139.3 12.8 163 556-722 9-219 (272)
56 PRK15416 lipopolysaccharide co 99.4 1.3E-12 2.9E-17 132.4 14.7 117 559-718 54-172 (201)
57 cd02027 APSK Adenosine 5'-phos 99.4 2E-12 4.4E-17 125.6 12.9 114 353-478 1-114 (149)
58 PHA02530 pseT polynucleotide k 99.4 3.7E-12 8.1E-17 136.7 15.9 145 351-515 2-149 (300)
59 PF08433 KTI12: Chromatin asso 99.4 8.5E-12 1.8E-16 132.7 15.8 135 353-507 3-138 (270)
60 TIGR01663 PNK-3'Pase polynucle 99.4 4.9E-12 1.1E-16 145.2 14.5 137 349-527 367-507 (526)
61 TIGR03574 selen_PSTK L-seryl-t 99.3 1.3E-11 2.8E-16 129.5 12.7 113 353-479 1-114 (249)
62 TIGR00455 apsK adenylylsulfate 99.3 2.7E-11 5.8E-16 121.2 13.1 118 348-477 15-132 (184)
63 COG4088 Predicted nucleotide k 99.3 2.3E-11 5E-16 122.1 12.2 136 353-507 3-139 (261)
64 PRK05537 bifunctional sulfate 99.3 2E-11 4.4E-16 142.1 13.4 145 322-479 363-509 (568)
65 PRK06762 hypothetical protein; 99.3 2.5E-11 5.4E-16 119.1 11.9 112 351-479 2-114 (166)
66 KOG0635 Adenosine 5'-phosphosu 99.3 1.7E-11 3.7E-16 117.3 10.1 101 348-459 28-129 (207)
67 cd02021 GntK Gluconate kinase 99.3 4.7E-11 1E-15 115.1 13.4 117 353-483 1-119 (150)
68 COG4639 Predicted kinase [Gene 99.2 4.3E-11 9.2E-16 115.6 11.4 113 351-479 2-115 (168)
69 cd00227 CPT Chloramphenicol (C 99.2 6.2E-11 1.3E-15 117.8 12.4 117 352-482 3-131 (175)
70 PRK00889 adenylylsulfate kinas 99.2 1.1E-10 2.4E-15 115.7 14.2 116 349-478 2-117 (175)
71 PRK03846 adenylylsulfate kinas 99.2 1.6E-10 3.4E-15 117.3 14.0 119 346-477 19-138 (198)
72 PRK05506 bifunctional sulfate 99.2 9.8E-11 2.1E-15 138.6 13.9 120 346-477 455-574 (632)
73 COG0703 AroK Shikimate kinase 99.1 1.3E-10 2.7E-15 115.1 7.7 137 353-512 4-144 (172)
74 PLN02950 4-alpha-glucanotransf 99.1 2.9E-10 6.3E-15 138.0 11.0 86 33-120 9-98 (909)
75 TIGR01313 therm_gnt_kin carboh 99.1 1.4E-09 3E-14 106.4 13.7 109 354-483 1-115 (163)
76 TIGR03575 selen_PSTK_euk L-ser 99.1 6.9E-10 1.5E-14 121.5 12.5 127 353-480 1-174 (340)
77 PRK11545 gntK gluconate kinase 99.1 1.6E-09 3.5E-14 107.0 12.5 141 357-527 1-143 (163)
78 PRK05541 adenylylsulfate kinas 99.0 2.4E-09 5.1E-14 106.3 12.7 116 349-480 5-120 (176)
79 KOG3062 RNA polymerase II elon 99.0 2.4E-09 5.3E-14 108.8 11.2 139 353-507 3-143 (281)
80 PRK12339 2-phosphoglycerate ki 99.0 9.1E-09 2E-13 104.9 15.4 126 350-484 2-142 (197)
81 cd00464 SK Shikimate kinase (S 99.0 1.7E-09 3.8E-14 104.0 9.6 139 354-512 2-140 (154)
82 PRK12337 2-phosphoglycerate ki 98.9 2.4E-08 5.1E-13 112.6 17.7 130 349-485 253-407 (475)
83 PRK13948 shikimate kinase; Pro 98.9 4.4E-09 9.6E-14 105.9 10.5 138 350-510 9-149 (182)
84 PRK00625 shikimate kinase; Pro 98.9 7E-09 1.5E-13 103.6 10.4 137 353-511 2-141 (173)
85 KOG4238 Bifunctional ATP sulfu 98.9 4.8E-09 1E-13 112.2 8.7 109 348-469 47-156 (627)
86 PF06414 Zeta_toxin: Zeta toxi 98.8 3.5E-08 7.5E-13 100.3 13.2 131 348-484 12-143 (199)
87 TIGR01359 UMP_CMP_kin_fam UMP- 98.8 3E-09 6.4E-14 105.9 4.3 152 353-527 1-167 (183)
88 PRK14532 adenylate kinase; Pro 98.8 3.1E-08 6.7E-13 99.3 11.6 144 353-516 2-155 (188)
89 PRK13949 shikimate kinase; Pro 98.8 9.8E-09 2.1E-13 102.0 7.7 140 353-511 3-146 (169)
90 PRK14531 adenylate kinase; Pro 98.8 8.3E-09 1.8E-13 103.5 7.0 140 352-517 3-153 (183)
91 PRK09825 idnK D-gluconate kina 98.8 1.3E-07 2.8E-12 94.7 14.9 145 352-527 4-151 (176)
92 PRK14527 adenylate kinase; Pro 98.8 2.5E-08 5.4E-13 100.6 9.8 157 350-527 5-175 (191)
93 PRK13946 shikimate kinase; Pro 98.7 5.5E-08 1.2E-12 97.7 9.9 138 350-509 9-149 (184)
94 PRK13947 shikimate kinase; Pro 98.7 8.1E-08 1.7E-12 94.5 10.0 136 353-509 3-140 (171)
95 PRK05057 aroK shikimate kinase 98.6 2.1E-07 4.6E-12 92.7 11.0 138 351-511 4-145 (172)
96 PRK14021 bifunctional shikimat 98.6 8.9E-08 1.9E-12 111.6 9.1 144 349-512 4-151 (542)
97 PRK00131 aroK shikimate kinase 98.6 2.4E-07 5.2E-12 90.7 10.4 43 350-397 3-45 (175)
98 PF07931 CPT: Chloramphenicol 98.6 4.2E-07 9.1E-12 90.9 11.9 118 352-482 2-130 (174)
99 PRK12338 hypothetical protein; 98.6 5.1E-07 1.1E-11 98.1 13.1 127 350-484 3-152 (319)
100 PLN02200 adenylate kinase fami 98.5 7.9E-08 1.7E-12 100.6 5.2 154 349-527 41-207 (234)
101 PRK01184 hypothetical protein; 98.5 1.8E-06 3.8E-11 86.3 13.9 139 352-509 2-143 (184)
102 COG3265 GntK Gluconate kinase 98.5 4.5E-07 9.7E-12 87.4 8.9 140 358-527 2-142 (161)
103 TIGR01360 aden_kin_iso1 adenyl 98.5 4.1E-07 8.9E-12 90.4 8.9 140 352-515 4-154 (188)
104 cd01428 ADK Adenylate kinase ( 98.4 1.5E-06 3.2E-11 87.0 11.7 151 354-518 2-174 (194)
105 PRK00279 adk adenylate kinase; 98.4 9.9E-07 2.1E-11 90.7 10.6 150 353-517 2-183 (215)
106 PLN02199 shikimate kinase 98.4 6.6E-07 1.4E-11 96.0 9.4 141 351-511 102-251 (303)
107 PRK03731 aroL shikimate kinase 98.4 1E-06 2.2E-11 86.9 9.1 137 353-511 4-145 (171)
108 KOG3354 Gluconate kinase [Carb 98.4 2.2E-06 4.7E-11 83.2 10.4 121 350-483 11-139 (191)
109 PRK08154 anaerobic benzoate ca 98.4 1.6E-06 3.4E-11 94.4 10.4 148 346-510 128-275 (309)
110 PRK14530 adenylate kinase; Pro 98.3 6E-06 1.3E-10 84.9 12.4 149 353-517 5-182 (215)
111 PRK13951 bifunctional shikimat 98.3 3.2E-06 7E-11 97.4 11.3 135 353-513 2-139 (488)
112 TIGR01351 adk adenylate kinase 98.3 6.6E-07 1.4E-11 91.7 5.1 147 354-518 2-181 (210)
113 PRK04040 adenylate kinase; Pro 98.3 8.9E-06 1.9E-10 82.4 12.8 119 351-481 2-131 (188)
114 PRK06696 uridine kinase; Valid 98.3 7.1E-06 1.5E-10 85.0 11.7 44 348-391 19-62 (223)
115 PRK06217 hypothetical protein; 98.2 8.2E-06 1.8E-10 81.8 11.2 129 353-510 3-134 (183)
116 PF01202 SKI: Shikimate kinase 98.2 8.6E-07 1.9E-11 86.9 3.6 132 360-512 1-134 (158)
117 PRK04220 2-phosphoglycerate ki 98.2 5.9E-05 1.3E-09 81.5 17.1 131 349-486 90-239 (301)
118 PF13207 AAA_17: AAA domain; P 98.2 6.5E-06 1.4E-10 76.1 8.5 33 353-390 1-33 (121)
119 cd02028 UMPK_like Uridine mono 98.1 1.6E-05 3.5E-10 79.8 11.4 151 353-517 1-169 (179)
120 PRK06761 hypothetical protein; 98.1 1.3E-05 2.8E-10 86.0 10.6 123 351-483 3-128 (282)
121 cd01672 TMPK Thymidine monopho 98.1 0.00011 2.3E-09 73.3 16.4 34 352-385 1-34 (200)
122 PRK14528 adenylate kinase; Pro 98.1 1.5E-05 3.3E-10 80.4 10.4 146 353-518 3-158 (186)
123 PRK03839 putative kinase; Prov 98.1 8.2E-06 1.8E-10 81.3 8.1 27 353-379 2-28 (180)
124 PRK08356 hypothetical protein; 98.1 0.00015 3.3E-09 73.4 16.6 120 350-484 4-137 (195)
125 COG0541 Ffh Signal recognition 98.1 9.8E-05 2.1E-09 82.5 16.0 45 349-393 98-142 (451)
126 TIGR03263 guanyl_kin guanylate 98.1 4.3E-05 9.2E-10 75.8 12.1 27 352-378 2-28 (180)
127 PRK00698 tmk thymidylate kinas 98.0 0.00013 2.8E-09 73.6 15.4 34 351-384 3-36 (205)
128 PRK10078 ribose 1,5-bisphospho 98.0 3.1E-05 6.8E-10 77.8 10.8 25 352-376 3-27 (186)
129 PRK07667 uridine kinase; Provi 98.0 7.2E-05 1.6E-09 75.8 13.4 41 350-390 16-56 (193)
130 PRK07261 topology modulation p 98.0 1.5E-05 3.2E-10 79.5 8.0 25 353-377 2-26 (171)
131 PLN02674 adenylate kinase 98.0 2.4E-05 5.2E-10 82.4 9.7 151 351-517 31-214 (244)
132 PRK00300 gmk guanylate kinase; 98.0 3.2E-05 6.9E-10 78.4 10.4 27 350-376 4-30 (205)
133 PRK08233 hypothetical protein; 98.0 0.00013 2.7E-09 72.2 14.3 27 350-376 2-28 (182)
134 PRK02496 adk adenylate kinase; 98.0 2.5E-05 5.5E-10 78.0 9.1 138 353-516 3-152 (184)
135 PRK14738 gmk guanylate kinase; 98.0 3.9E-05 8.4E-10 78.6 10.4 26 349-374 11-36 (206)
136 TIGR00041 DTMP_kinase thymidyl 98.0 0.00029 6.3E-09 70.7 16.2 35 351-385 3-37 (195)
137 PRK14529 adenylate kinase; Pro 97.9 2.6E-05 5.7E-10 81.1 8.6 114 354-482 3-126 (223)
138 TIGR02322 phosphon_PhnN phosph 97.9 7.2E-05 1.6E-09 74.3 11.0 27 352-378 2-28 (179)
139 PRK13975 thymidylate kinase; P 97.9 0.00018 3.9E-09 72.3 13.8 27 351-377 2-28 (196)
140 PRK08118 topology modulation p 97.9 5.3E-05 1.2E-09 75.2 9.5 31 353-383 3-33 (167)
141 cd02020 CMPK Cytidine monophos 97.9 8.2E-05 1.8E-09 70.7 10.4 31 353-383 1-31 (147)
142 PF08303 tRNA_lig_kinase: tRNA 97.9 0.00017 3.7E-09 71.2 12.7 74 353-455 1-76 (168)
143 PRK05480 uridine/cytidine kina 97.9 0.00013 2.9E-09 74.5 12.5 39 350-390 5-43 (209)
144 PRK14526 adenylate kinase; Pro 97.9 1.6E-05 3.6E-10 81.9 5.6 144 354-518 3-179 (211)
145 PRK13808 adenylate kinase; Pro 97.9 1.7E-05 3.6E-10 87.0 5.8 148 354-517 3-162 (333)
146 PTZ00088 adenylate kinase 1; P 97.9 9.6E-05 2.1E-09 77.2 11.2 151 350-517 5-196 (229)
147 PRK14737 gmk guanylate kinase; 97.8 0.00016 3.5E-09 73.2 11.4 28 349-376 2-29 (186)
148 PRK05416 glmZ(sRNA)-inactivati 97.8 0.00021 4.6E-09 77.2 12.6 108 351-491 6-115 (288)
149 PRK13973 thymidylate kinase; P 97.8 0.0012 2.7E-08 67.9 17.6 35 351-385 3-37 (213)
150 PF00485 PRK: Phosphoribulokin 97.8 0.00014 3E-09 73.6 10.4 152 353-518 1-179 (194)
151 PRK06547 hypothetical protein; 97.8 0.00014 3E-09 72.7 10.2 38 348-390 12-49 (172)
152 PF00406 ADK: Adenylate kinase 97.7 0.00024 5.2E-09 68.8 10.7 131 356-516 1-142 (151)
153 TIGR01425 SRP54_euk signal rec 97.7 0.00023 5E-09 80.6 12.0 43 349-391 98-140 (429)
154 PRK15453 phosphoribulokinase; 97.7 0.00013 2.9E-09 78.1 9.2 43 350-392 4-46 (290)
155 COG0563 Adk Adenylate kinase a 97.7 0.00035 7.7E-09 70.3 11.8 142 353-518 2-154 (178)
156 PF00448 SRP54: SRP54-type pro 97.7 0.00039 8.4E-09 71.0 12.2 42 351-392 1-42 (196)
157 COG1102 Cmk Cytidylate kinase 97.7 9.3E-05 2E-09 72.7 7.0 27 353-379 2-28 (179)
158 TIGR02173 cyt_kin_arch cytidyl 97.7 7.2E-05 1.6E-09 73.2 6.2 36 352-392 1-36 (171)
159 PLN02459 probable adenylate ki 97.7 0.00038 8.1E-09 74.0 11.8 114 350-482 28-153 (261)
160 PRK04182 cytidylate kinase; Pr 97.6 4.4E-05 9.6E-10 75.2 4.1 27 352-378 1-27 (180)
161 PLN02348 phosphoribulokinase 97.6 0.00048 1E-08 77.0 11.7 43 348-390 46-103 (395)
162 cd02029 PRK_like Phosphoribulo 97.6 0.00025 5.4E-09 75.5 8.9 40 353-392 1-40 (277)
163 PLN02924 thymidylate kinase 97.6 0.00062 1.3E-08 70.8 11.7 37 349-385 14-50 (220)
164 smart00072 GuKc Guanylate kina 97.6 0.00081 1.8E-08 67.5 12.2 25 351-375 2-26 (184)
165 COG4185 Uncharacterized protei 97.5 0.00087 1.9E-08 65.9 11.6 148 351-518 2-150 (187)
166 COG0572 Udk Uridine kinase [Nu 97.5 0.00055 1.2E-08 70.7 10.6 150 349-517 6-180 (218)
167 PRK10867 signal recognition pa 97.5 0.0006 1.3E-08 77.5 11.9 44 349-392 98-142 (433)
168 COG2074 2-phosphoglycerate kin 97.5 0.00096 2.1E-08 69.9 12.1 131 346-484 84-232 (299)
169 cd01673 dNK Deoxyribonucleosid 97.5 0.0011 2.3E-08 66.7 12.3 25 353-377 1-25 (193)
170 PRK09270 nucleoside triphospha 97.5 0.0027 5.7E-08 66.1 15.6 43 348-390 30-73 (229)
171 PRK00771 signal recognition pa 97.5 0.00055 1.2E-08 78.0 10.5 44 349-392 93-136 (437)
172 TIGR00064 ftsY signal recognit 97.5 0.0011 2.4E-08 71.1 12.1 44 349-392 70-113 (272)
173 KOG3079 Uridylate kinase/adeny 97.4 0.0023 5E-08 64.3 13.3 146 349-517 6-162 (195)
174 PTZ00301 uridine kinase; Provi 97.4 0.0022 4.8E-08 66.2 13.2 155 351-517 3-179 (210)
175 PF00625 Guanylate_kin: Guanyl 97.4 0.004 8.6E-08 62.4 14.3 113 351-482 2-135 (183)
176 TIGR00959 ffh signal recogniti 97.4 0.0012 2.7E-08 75.0 11.7 44 349-392 97-141 (428)
177 PRK14974 cell division protein 97.3 0.0014 3E-08 72.4 11.4 44 349-392 138-181 (336)
178 cd02030 NDUO42 NADH:Ubiquinone 97.3 0.003 6.5E-08 65.4 13.1 28 353-380 1-28 (219)
179 KOG0780 Signal recognition par 97.3 0.0011 2.4E-08 72.9 9.9 106 344-455 94-205 (483)
180 cd02023 UMPK Uridine monophosp 97.3 0.0047 1E-07 62.4 13.9 37 353-391 1-37 (198)
181 cd03115 SRP The signal recogni 97.3 0.0024 5.2E-08 63.1 11.2 40 353-392 2-41 (173)
182 PRK14730 coaE dephospho-CoA ki 97.2 0.0021 4.5E-08 65.5 10.8 38 352-394 2-39 (195)
183 PRK13974 thymidylate kinase; P 97.2 0.0043 9.2E-08 63.9 13.2 29 351-379 3-31 (212)
184 TIGR00235 udk uridine kinase. 97.2 0.0059 1.3E-07 62.4 14.1 39 350-390 5-43 (207)
185 cd02025 PanK Pantothenate kina 97.2 0.0019 4.1E-08 67.1 10.0 38 353-390 1-40 (220)
186 PLN02165 adenylate isopentenyl 97.1 0.0027 5.8E-08 69.8 11.0 34 349-382 41-74 (334)
187 PRK10416 signal recognition pa 97.1 0.0035 7.5E-08 68.8 11.8 43 349-391 112-154 (318)
188 KOG4622 Predicted nucleotide k 97.1 0.00089 1.9E-08 67.5 6.3 122 352-479 2-140 (291)
189 cd07061 HP_HAP_like Histidine 97.1 0.00072 1.6E-08 70.5 5.9 57 561-626 5-69 (242)
190 KOG2134 Polynucleotide kinase 97.1 0.00049 1.1E-08 75.6 4.7 102 349-483 267-369 (422)
191 PRK07933 thymidylate kinase; V 97.1 0.024 5.2E-07 58.6 16.8 34 352-385 1-34 (213)
192 PRK13477 bifunctional pantoate 97.1 0.001 2.2E-08 77.1 7.3 32 350-381 283-314 (512)
193 cd02019 NK Nucleoside/nucleoti 97.1 0.00066 1.4E-08 57.4 4.4 31 353-385 1-31 (69)
194 TIGR00152 dephospho-CoA kinase 97.1 0.0034 7.3E-08 63.2 10.2 36 353-393 1-36 (188)
195 cd02024 NRK1 Nicotinamide ribo 97.1 0.0033 7.1E-08 63.9 10.1 34 353-390 1-34 (187)
196 COG2019 AdkA Archaeal adenylat 97.1 0.0023 5E-08 63.4 8.5 36 351-390 4-39 (189)
197 PLN02842 nucleotide kinase 97.1 0.0053 1.1E-07 70.9 12.7 25 355-379 1-25 (505)
198 PF02223 Thymidylate_kin: Thym 97.0 0.032 7E-07 55.7 16.9 26 356-381 1-26 (186)
199 COG0194 Gmk Guanylate kinase [ 97.0 0.013 2.7E-07 59.3 13.6 26 350-375 3-28 (191)
200 COG0125 Tmk Thymidylate kinase 97.0 0.033 7.2E-07 57.5 17.0 36 350-385 2-37 (208)
201 cd02022 DPCK Dephospho-coenzym 97.0 0.004 8.8E-08 62.3 9.9 35 353-393 1-35 (179)
202 PRK09435 membrane ATPase/prote 96.9 0.0037 8.1E-08 68.9 9.6 42 348-389 53-94 (332)
203 PF00004 AAA: ATPase family as 96.9 0.005 1.1E-07 57.0 9.2 34 354-390 1-34 (132)
204 PRK00023 cmk cytidylate kinase 96.9 0.0056 1.2E-07 63.9 10.3 34 351-384 4-37 (225)
205 PF13238 AAA_18: AAA domain; P 96.8 0.00095 2.1E-08 61.6 3.5 22 354-375 1-22 (129)
206 PRK00081 coaE dephospho-CoA ki 96.8 0.0028 6E-08 64.4 7.1 37 352-394 3-39 (194)
207 TIGR00017 cmk cytidylate kinas 96.8 0.0089 1.9E-07 62.1 10.8 32 351-382 2-33 (217)
208 PRK14490 putative bifunctional 96.8 0.002 4.3E-08 72.0 6.4 35 350-385 4-38 (369)
209 cd00071 GMPK Guanosine monopho 96.8 0.0024 5.3E-08 61.3 6.1 24 353-376 1-24 (137)
210 PRK07429 phosphoribulokinase; 96.8 0.016 3.4E-07 63.9 12.9 41 348-390 5-45 (327)
211 cd01120 RecA-like_NTPases RecA 96.7 0.0085 1.8E-07 57.0 9.3 38 353-390 1-38 (165)
212 smart00382 AAA ATPases associa 96.7 0.005 1.1E-07 56.1 7.1 38 352-389 3-40 (148)
213 PRK11889 flhF flagellar biosyn 96.6 0.012 2.7E-07 66.0 10.8 43 349-391 239-281 (436)
214 COG3896 Chloramphenicol 3-O-ph 96.6 0.0076 1.7E-07 59.2 8.0 126 350-481 22-160 (205)
215 PLN02318 phosphoribulokinase/u 96.5 0.022 4.7E-07 66.9 12.4 40 348-391 62-101 (656)
216 COG0552 FtsY Signal recognitio 96.5 0.045 9.8E-07 59.9 14.0 93 347-467 135-229 (340)
217 PRK05439 pantothenate kinase; 96.5 0.004 8.6E-08 68.0 5.9 43 348-390 83-127 (311)
218 PRK14733 coaE dephospho-CoA ki 96.5 0.0046 9.9E-08 63.7 5.9 34 350-383 5-38 (204)
219 PRK12724 flagellar biosynthesi 96.5 0.019 4E-07 65.1 11.2 43 350-392 222-265 (432)
220 PRK13976 thymidylate kinase; P 96.4 0.014 3E-07 60.2 9.4 28 352-379 1-29 (209)
221 PRK09169 hypothetical protein; 96.4 0.0035 7.6E-08 81.2 5.9 139 351-512 2110-2256(2316)
222 PRK12726 flagellar biosynthesi 96.4 0.019 4.2E-07 64.2 10.9 43 350-392 205-247 (407)
223 COG1428 Deoxynucleoside kinase 96.4 0.036 7.8E-07 57.1 11.6 26 351-376 4-29 (216)
224 cd02026 PRK Phosphoribulokinas 96.3 0.052 1.1E-06 58.4 13.1 36 353-390 1-36 (273)
225 PRK09361 radB DNA repair and r 96.3 0.06 1.3E-06 55.5 12.8 40 349-388 21-60 (225)
226 PRK14734 coaE dephospho-CoA ki 96.2 0.037 8E-07 56.6 11.1 36 352-393 2-37 (200)
227 cd01394 radB RadB. The archaea 96.2 0.037 8.1E-07 56.7 11.1 38 350-387 18-55 (218)
228 PF06309 Torsin: Torsin; Inte 96.2 0.0056 1.2E-07 58.2 4.5 47 339-385 41-87 (127)
229 cd00009 AAA The AAA+ (ATPases 96.2 0.018 3.9E-07 53.0 7.9 37 351-387 19-55 (151)
230 CHL00181 cbbX CbbX; Provisiona 96.2 0.1 2.2E-06 56.6 14.7 31 350-380 58-88 (287)
231 PRK13768 GTPase; Provisional 96.2 0.011 2.5E-07 62.6 7.2 39 351-389 2-40 (253)
232 TIGR02237 recomb_radB DNA repa 96.2 0.042 9.2E-07 55.9 11.1 38 350-387 11-48 (209)
233 TIGR01618 phage_P_loop phage n 96.1 0.022 4.7E-07 59.4 8.9 33 350-389 11-43 (220)
234 PHA03132 thymidine kinase; Pro 96.1 0.46 9.9E-06 56.1 20.5 32 351-385 257-288 (580)
235 TIGR00750 lao LAO/AO transport 96.1 0.019 4.2E-07 62.3 8.8 42 349-390 32-73 (300)
236 PLN02840 tRNA dimethylallyltra 96.1 0.011 2.3E-07 67.1 6.9 30 349-378 19-48 (421)
237 PRK14732 coaE dephospho-CoA ki 96.1 0.04 8.8E-07 56.3 10.5 36 353-394 1-36 (196)
238 PF01121 CoaE: Dephospho-CoA k 96.1 0.02 4.2E-07 57.9 8.0 133 352-511 1-160 (180)
239 KOG1533 Predicted GTPase [Gene 96.1 0.069 1.5E-06 55.8 11.9 116 351-473 2-146 (290)
240 KOG3347 Predicted nucleotide k 96.1 0.041 8.9E-07 53.9 9.6 35 353-392 9-43 (176)
241 KOG0738 AAA+-type ATPase [Post 96.0 0.02 4.4E-07 63.5 8.3 90 315-421 212-302 (491)
242 TIGR03420 DnaA_homol_Hda DnaA 96.0 0.03 6.6E-07 57.3 9.4 39 350-388 37-75 (226)
243 cd02861 E_set_proteins_like E 96.0 0.023 5E-07 49.7 7.1 54 32-96 3-56 (82)
244 cd00984 DnaB_C DnaB helicase C 96.0 0.14 3E-06 53.1 14.2 39 350-388 12-51 (242)
245 PLN02796 D-glycerate 3-kinase 96.0 0.0088 1.9E-07 66.1 5.3 42 349-390 98-139 (347)
246 PRK12723 flagellar biosynthesi 96.0 0.11 2.4E-06 58.6 14.1 44 349-392 172-219 (388)
247 PRK06893 DNA replication initi 96.0 0.1 2.2E-06 54.5 12.9 35 353-387 41-75 (229)
248 PF03668 ATP_bind_2: P-loop AT 95.9 0.12 2.7E-06 55.6 13.2 120 353-507 3-126 (284)
249 PF13173 AAA_14: AAA domain 95.9 0.059 1.3E-06 50.8 9.8 83 352-457 3-85 (128)
250 PRK08084 DNA replication initi 95.8 0.089 1.9E-06 55.1 11.9 37 353-389 47-83 (235)
251 PRK14956 DNA polymerase III su 95.8 0.11 2.3E-06 60.1 13.3 151 351-508 40-194 (484)
252 PLN03046 D-glycerate 3-kinase; 95.8 0.012 2.6E-07 66.4 5.5 43 348-390 209-251 (460)
253 PRK12377 putative replication 95.8 0.043 9.4E-07 58.2 9.3 41 352-392 102-142 (248)
254 TIGR02881 spore_V_K stage V sp 95.8 0.1 2.3E-06 55.3 12.2 30 350-379 41-70 (261)
255 TIGR00554 panK_bact pantothena 95.8 0.014 3E-07 63.3 5.6 43 348-390 59-103 (290)
256 TIGR03499 FlhF flagellar biosy 95.8 0.013 2.8E-07 63.1 5.4 42 350-391 193-236 (282)
257 PF00328 His_Phos_2: Histidine 95.7 0.022 4.7E-07 61.5 7.1 46 581-626 60-112 (347)
258 PRK14960 DNA polymerase III su 95.7 0.12 2.7E-06 61.5 13.7 28 350-377 36-63 (702)
259 KOG3220 Similar to bacterial d 95.7 0.19 4.2E-06 51.5 13.1 115 352-480 2-145 (225)
260 PRK04296 thymidine kinase; Pro 95.7 0.054 1.2E-06 54.9 9.2 35 352-386 3-37 (190)
261 PRK05800 cobU adenosylcobinami 95.7 0.015 3.3E-07 58.1 5.1 24 353-376 3-26 (170)
262 PRK09087 hypothetical protein; 95.7 0.059 1.3E-06 56.3 9.7 112 353-484 46-167 (226)
263 PF03029 ATP_bind_1: Conserved 95.7 0.01 2.3E-07 62.4 4.1 35 356-390 1-35 (238)
264 PF13521 AAA_28: AAA domain; P 95.7 0.041 8.9E-07 53.8 8.1 21 354-374 2-22 (163)
265 PRK10751 molybdopterin-guanine 95.6 0.017 3.6E-07 58.1 5.2 36 350-385 5-40 (173)
266 PRK00091 miaA tRNA delta(2)-is 95.6 0.023 5E-07 62.1 6.8 28 350-377 3-30 (307)
267 PLN02772 guanylate kinase 95.6 0.19 4E-06 56.7 13.9 29 348-376 132-160 (398)
268 cd01122 GP4d_helicase GP4d_hel 95.6 0.07 1.5E-06 56.5 10.2 117 341-466 21-147 (271)
269 PHA00729 NTP-binding motif con 95.6 0.015 3.2E-07 60.8 4.9 26 351-376 17-42 (226)
270 PLN03025 replication factor C 95.6 0.1 2.3E-06 57.0 11.6 23 354-376 37-59 (319)
271 PRK12323 DNA polymerase III su 95.5 0.14 3.1E-06 60.9 13.1 28 350-377 37-64 (700)
272 PRK08727 hypothetical protein; 95.5 0.2 4.4E-06 52.3 13.1 37 353-389 43-79 (233)
273 PF13401 AAA_22: AAA domain; P 95.5 0.038 8.2E-07 51.3 6.9 38 350-387 3-45 (131)
274 PF05496 RuvB_N: Holliday junc 95.5 0.032 6.9E-07 58.3 6.8 32 353-387 52-83 (233)
275 PRK09518 bifunctional cytidyla 95.5 0.13 2.8E-06 62.6 13.1 31 353-383 3-33 (712)
276 PLN02748 tRNA dimethylallyltra 95.5 0.034 7.5E-07 63.9 7.7 91 348-446 19-124 (468)
277 PRK08181 transposase; Validate 95.5 0.058 1.3E-06 57.9 9.0 39 352-390 107-145 (269)
278 PRK07952 DNA replication prote 95.4 0.049 1.1E-06 57.6 8.3 39 352-390 100-138 (244)
279 PRK07003 DNA polymerase III su 95.4 0.098 2.1E-06 63.1 11.5 28 350-377 37-64 (830)
280 smart00763 AAA_PrkA PrkA AAA d 95.4 0.013 2.8E-07 65.1 4.0 30 348-377 75-104 (361)
281 PRK05642 DNA replication initi 95.4 0.09 2E-06 55.1 10.1 39 352-390 46-84 (234)
282 PRK14955 DNA polymerase III su 95.4 0.17 3.8E-06 57.1 13.1 28 350-377 37-64 (397)
283 PRK14949 DNA polymerase III su 95.4 0.18 3.8E-06 62.0 13.7 28 350-377 37-64 (944)
284 TIGR00176 mobB molybdopterin-g 95.4 0.018 3.8E-07 56.7 4.4 33 353-385 1-33 (155)
285 COG1618 Predicted nucleotide k 95.4 0.017 3.8E-07 57.1 4.3 110 351-464 5-135 (179)
286 PRK14722 flhF flagellar biosyn 95.4 0.14 3.1E-06 57.4 12.0 42 350-391 136-179 (374)
287 KOG1532 GTPase XAB1, interacts 95.4 0.02 4.4E-07 60.8 4.9 43 348-390 16-58 (366)
288 cd02034 CooC The accessory pro 95.3 0.026 5.6E-07 52.9 5.0 36 354-389 2-37 (116)
289 cd01124 KaiC KaiC is a circadi 95.3 0.17 3.7E-06 50.0 11.2 36 353-388 1-36 (187)
290 cd01983 Fer4_NifH The Fer4_Nif 95.3 0.023 5E-07 49.1 4.4 34 353-386 1-34 (99)
291 KOG3877 NADH:ubiquinone oxidor 95.3 0.72 1.6E-05 49.4 15.9 41 339-379 59-99 (393)
292 PF13481 AAA_25: AAA domain; P 95.3 0.16 3.5E-06 50.6 11.1 26 351-376 32-57 (193)
293 PLN00020 ribulose bisphosphate 95.3 0.055 1.2E-06 60.4 8.1 62 348-422 145-206 (413)
294 PRK05973 replicative DNA helic 95.3 0.033 7.2E-07 58.7 6.2 39 350-388 63-101 (237)
295 KOG0744 AAA+-type ATPase [Post 95.3 0.02 4.4E-07 62.1 4.6 27 350-376 176-202 (423)
296 PRK13695 putative NTPase; Prov 95.3 0.18 3.8E-06 50.0 11.1 29 353-381 2-30 (174)
297 PRK11860 bifunctional 3-phosph 95.3 0.069 1.5E-06 64.3 9.8 33 351-383 442-474 (661)
298 PRK13342 recombination factor 95.2 0.31 6.8E-06 55.3 14.2 24 353-376 38-61 (413)
299 PHA02544 44 clamp loader, smal 95.1 0.27 5.9E-06 53.2 13.1 29 348-376 40-68 (316)
300 PRK05703 flhF flagellar biosyn 95.1 0.18 4E-06 57.6 11.9 42 351-392 221-264 (424)
301 PRK06645 DNA polymerase III su 95.0 0.19 4.2E-06 58.6 12.1 27 351-377 43-69 (507)
302 cd03116 MobB Molybdenum is an 95.0 0.033 7.1E-07 55.1 5.1 34 352-385 2-35 (159)
303 cd01131 PilT Pilus retraction 95.0 0.2 4.3E-06 51.1 10.9 26 353-378 3-28 (198)
304 PF07728 AAA_5: AAA domain (dy 95.0 0.031 6.8E-07 53.0 4.8 30 354-386 2-31 (139)
305 cd03246 ABCC_Protease_Secretio 95.0 0.17 3.6E-06 50.2 10.1 106 351-465 28-152 (173)
306 PRK04195 replication factor C 95.0 0.11 2.3E-06 60.4 10.0 37 351-390 39-75 (482)
307 PRK14961 DNA polymerase III su 95.0 0.23 5.1E-06 55.4 12.3 27 350-376 37-63 (363)
308 COG1703 ArgK Putative periplas 95.0 0.15 3.2E-06 55.2 10.1 51 337-388 38-88 (323)
309 TIGR00174 miaA tRNA isopenteny 94.9 0.027 5.8E-07 61.0 4.5 25 353-377 1-25 (287)
310 PLN02422 dephospho-CoA kinase 94.9 0.12 2.5E-06 54.4 9.0 34 353-392 3-36 (232)
311 PRK08099 bifunctional DNA-bind 94.9 0.077 1.7E-06 60.1 8.2 28 351-378 219-246 (399)
312 cd04169 RF3 RF3 subfamily. Pe 94.9 0.34 7.5E-06 51.9 12.8 24 353-376 4-27 (267)
313 cd04163 Era Era subfamily. Er 94.9 0.26 5.6E-06 46.5 10.7 24 351-374 3-26 (168)
314 PRK11331 5-methylcytosine-spec 94.9 0.065 1.4E-06 61.3 7.5 27 351-377 194-220 (459)
315 PRK06620 hypothetical protein; 94.9 0.097 2.1E-06 54.2 8.2 25 352-376 45-69 (214)
316 cd02859 AMPKbeta_GBD_like AMP- 94.9 0.082 1.8E-06 46.1 6.5 52 33-96 4-55 (79)
317 COG1484 DnaC DNA replication p 94.8 0.18 3.9E-06 53.7 10.4 86 350-455 104-192 (254)
318 PF03796 DnaB_C: DnaB-like hel 94.8 0.19 4.2E-06 53.1 10.6 109 350-467 18-138 (259)
319 PF00931 NB-ARC: NB-ARC domain 94.8 0.2 4.4E-06 53.0 10.9 28 349-376 17-44 (287)
320 COG1936 Predicted nucleotide k 94.8 0.019 4.2E-07 57.3 2.7 24 353-377 2-25 (180)
321 PRK14962 DNA polymerase III su 94.8 0.35 7.6E-06 56.0 13.4 28 350-377 35-62 (472)
322 PF01695 IstB_IS21: IstB-like 94.8 0.032 6.9E-07 56.1 4.4 42 351-392 47-88 (178)
323 PRK06731 flhF flagellar biosyn 94.8 0.4 8.6E-06 51.6 12.8 42 350-391 74-115 (270)
324 PRK08116 hypothetical protein; 94.7 0.19 4.1E-06 53.9 10.3 40 351-390 114-153 (268)
325 PRK08939 primosomal protein Dn 94.7 0.15 3.3E-06 55.7 9.8 40 351-390 156-195 (306)
326 COG2256 MGS1 ATPase related to 94.7 0.029 6.3E-07 62.6 4.0 25 353-377 50-74 (436)
327 PRK14959 DNA polymerase III su 94.6 0.32 7E-06 57.9 12.8 27 351-377 38-64 (624)
328 PRK08691 DNA polymerase III su 94.6 0.3 6.5E-06 58.7 12.5 28 350-377 37-64 (709)
329 PRK14493 putative bifunctional 94.6 0.062 1.3E-06 57.9 6.3 32 353-385 3-34 (274)
330 PRK06921 hypothetical protein; 94.6 0.25 5.4E-06 52.9 10.9 37 351-387 117-154 (266)
331 TIGR00150 HI0065_YjeE ATPase, 94.6 0.032 6.9E-07 53.7 3.6 29 350-378 21-49 (133)
332 TIGR03709 PPK2_rel_1 polyphosp 94.6 0.26 5.7E-06 52.7 10.8 113 349-488 54-186 (264)
333 PF03205 MobB: Molybdopterin g 94.6 0.049 1.1E-06 52.7 4.9 33 353-385 2-34 (140)
334 cd03114 ArgK-like The function 94.6 0.043 9.3E-07 53.5 4.5 37 353-389 1-37 (148)
335 COG1660 Predicted P-loop-conta 94.6 0.75 1.6E-05 49.0 13.8 111 353-498 3-118 (286)
336 PF05729 NACHT: NACHT domain 94.5 0.032 7E-07 53.5 3.6 27 353-379 2-28 (166)
337 PRK07994 DNA polymerase III su 94.5 0.32 6.9E-06 58.3 12.5 28 350-377 37-64 (647)
338 TIGR03877 thermo_KaiC_1 KaiC d 94.5 0.22 4.7E-06 52.1 9.9 38 350-387 20-57 (237)
339 TIGR03015 pepcterm_ATPase puta 94.5 0.97 2.1E-05 47.5 15.0 26 351-376 43-68 (269)
340 PRK09183 transposase/IS protei 94.5 0.12 2.7E-06 55.0 8.1 39 352-390 103-141 (259)
341 PRK14951 DNA polymerase III su 94.5 0.35 7.7E-06 57.7 12.6 29 349-377 36-64 (618)
342 PRK08903 DnaA regulatory inact 94.4 0.046 1E-06 56.5 4.7 36 352-387 43-78 (227)
343 PRK12727 flagellar biosynthesi 94.4 0.18 3.9E-06 58.9 9.7 42 350-391 349-392 (559)
344 TIGR03600 phage_DnaB phage rep 94.4 0.43 9.2E-06 54.3 12.8 109 350-467 193-313 (421)
345 PF07724 AAA_2: AAA domain (Cd 94.4 0.074 1.6E-06 53.2 5.9 40 351-390 3-43 (171)
346 TIGR00390 hslU ATP-dependent p 94.4 0.08 1.7E-06 60.0 6.7 34 350-383 46-79 (441)
347 PRK13886 conjugal transfer pro 94.4 0.44 9.5E-06 50.4 11.7 110 351-469 3-123 (241)
348 COG0237 CoaE Dephospho-CoA kin 94.3 0.029 6.2E-07 57.7 2.8 36 351-392 2-37 (201)
349 COG0283 Cmk Cytidylate kinase 94.3 0.036 7.9E-07 57.2 3.4 31 352-382 5-35 (222)
350 cd02037 MRP-like MRP (Multiple 94.3 0.1 2.2E-06 51.4 6.6 38 353-390 2-39 (169)
351 PRK05896 DNA polymerase III su 94.3 0.45 9.8E-06 56.5 12.8 27 350-376 37-63 (605)
352 COG1419 FlhF Flagellar GTP-bin 94.3 0.79 1.7E-05 51.8 14.1 42 351-392 203-246 (407)
353 PRK14957 DNA polymerase III su 94.3 0.38 8.2E-06 56.7 12.2 28 350-377 37-64 (546)
354 PF00910 RNA_helicase: RNA hel 94.3 0.034 7.5E-07 51.0 2.9 24 354-377 1-24 (107)
355 PRK14965 DNA polymerase III su 94.3 0.59 1.3E-05 55.5 13.9 28 349-376 36-63 (576)
356 PRK14494 putative molybdopteri 94.3 0.072 1.6E-06 55.9 5.6 34 352-385 2-35 (229)
357 PRK14731 coaE dephospho-CoA ki 94.2 0.036 7.8E-07 57.0 3.3 37 350-392 4-40 (208)
358 PRK00149 dnaA chromosomal repl 94.2 0.36 7.8E-06 55.4 11.8 38 353-390 150-189 (450)
359 TIGR02012 tigrfam_recA protein 94.2 0.23 5E-06 54.7 9.7 38 350-387 54-91 (321)
360 PRK04328 hypothetical protein; 94.2 0.21 4.5E-06 52.9 9.1 38 350-387 22-59 (249)
361 PRK05342 clpX ATP-dependent pr 94.2 0.074 1.6E-06 60.5 6.0 27 352-378 109-135 (412)
362 PRK14958 DNA polymerase III su 94.2 0.44 9.5E-06 55.8 12.4 28 350-377 37-64 (509)
363 cd01886 EF-G Elongation factor 94.2 1.1 2.4E-05 48.1 14.6 76 433-527 89-167 (270)
364 TIGR03708 poly_P_AMP_trns poly 94.2 0.38 8.2E-06 55.9 11.7 113 348-487 37-169 (493)
365 CHL00195 ycf46 Ycf46; Provisio 94.2 0.22 4.7E-06 58.0 9.8 29 350-378 258-286 (489)
366 COG4240 Predicted kinase [Gene 94.1 0.068 1.5E-06 55.7 4.9 42 349-390 48-90 (300)
367 cd01121 Sms Sms (bacterial rad 94.1 0.42 9.1E-06 53.7 11.7 48 341-388 72-119 (372)
368 TIGR03707 PPK2_P_aer polyphosp 94.1 0.46 9.9E-06 50.0 11.2 112 349-487 29-160 (230)
369 KOG1969 DNA replication checkp 94.1 0.06 1.3E-06 63.9 5.0 42 348-392 323-364 (877)
370 cd00154 Rab Rab family. Rab G 94.1 0.095 2.1E-06 49.1 5.6 20 354-373 3-22 (159)
371 TIGR03598 GTPase_YsxC ribosome 94.1 0.44 9.6E-06 47.2 10.7 26 349-374 16-41 (179)
372 KOG0733 Nuclear AAA ATPase (VC 94.1 0.18 3.8E-06 59.1 8.6 27 350-376 222-248 (802)
373 TIGR00665 DnaB replicative DNA 94.1 0.6 1.3E-05 53.3 13.1 108 350-466 194-312 (434)
374 COG5324 Uncharacterized conser 94.0 0.2 4.4E-06 56.8 8.8 138 350-519 373-515 (758)
375 PRK11823 DNA repair protein Ra 94.0 0.4 8.6E-06 55.2 11.5 48 341-388 70-117 (446)
376 KOG0734 AAA+-type ATPase conta 94.0 0.09 1.9E-06 60.5 6.0 27 348-374 334-360 (752)
377 cd00983 recA RecA is a bacter 94.0 0.29 6.3E-06 54.0 9.9 38 350-387 54-91 (325)
378 PRK14723 flhF flagellar biosyn 94.0 0.37 8E-06 58.6 11.6 42 350-391 184-227 (767)
379 TIGR00362 DnaA chromosomal rep 94.0 0.62 1.3E-05 52.7 12.9 38 353-390 138-177 (405)
380 COG4175 ProV ABC-type proline/ 94.0 0.16 3.4E-06 55.5 7.5 25 351-375 54-78 (386)
381 PRK07764 DNA polymerase III su 93.9 0.4 8.8E-06 59.1 12.0 27 350-376 36-62 (824)
382 TIGR03878 thermo_KaiC_2 KaiC d 93.9 0.36 7.9E-06 51.4 10.3 38 350-387 35-72 (259)
383 PRK05201 hslU ATP-dependent pr 93.9 0.13 2.8E-06 58.4 7.1 32 350-381 49-80 (443)
384 TIGR01650 PD_CobS cobaltochela 93.9 0.05 1.1E-06 59.9 3.7 28 353-380 66-93 (327)
385 COG0470 HolB ATPase involved i 93.9 0.32 7E-06 52.4 10.0 27 350-376 23-49 (325)
386 PRK05636 replicative DNA helic 93.8 0.48 1E-05 55.4 11.9 116 341-466 256-382 (505)
387 PF13245 AAA_19: Part of AAA d 93.8 0.099 2.1E-06 45.3 4.7 25 352-376 11-35 (76)
388 KOG0730 AAA+-type ATPase [Post 93.8 0.15 3.3E-06 60.0 7.6 28 349-376 466-493 (693)
389 PF13191 AAA_16: AAA ATPase do 93.8 0.056 1.2E-06 53.1 3.6 31 348-378 21-51 (185)
390 cd01895 EngA2 EngA2 subfamily. 93.8 0.5 1.1E-05 45.1 10.2 24 351-374 2-25 (174)
391 PRK03992 proteasome-activating 93.8 0.17 3.7E-06 57.1 7.9 28 349-376 163-190 (389)
392 cd03230 ABC_DR_subfamily_A Thi 93.8 0.63 1.4E-05 46.1 11.1 106 351-465 26-151 (173)
393 PF03266 NTPase_1: NTPase; In 93.8 0.063 1.4E-06 53.6 3.9 26 354-379 2-27 (168)
394 PRK00411 cdc6 cell division co 93.8 1.3 2.8E-05 49.5 14.8 39 349-387 53-93 (394)
395 TIGR03689 pup_AAA proteasome A 93.8 0.14 3E-06 59.7 7.3 28 351-378 216-243 (512)
396 TIGR02880 cbbX_cfxQ probable R 93.7 0.056 1.2E-06 58.3 3.8 30 351-380 58-87 (284)
397 cd04162 Arl9_Arfrp2_like Arl9/ 93.7 0.14 3E-06 50.1 6.1 21 354-374 2-22 (164)
398 KOG2170 ATPase of the AAA+ sup 93.6 0.063 1.4E-06 58.0 3.8 40 346-385 105-144 (344)
399 cd01887 IF2_eIF5B IF2/eIF5B (i 93.5 0.5 1.1E-05 45.3 9.7 22 353-374 2-23 (168)
400 PRK06321 replicative DNA helic 93.5 0.7 1.5E-05 53.6 12.4 117 340-466 216-343 (472)
401 PRK13341 recombination factor 93.5 0.74 1.6E-05 56.1 13.1 24 353-376 54-77 (725)
402 PF02421 FeoB_N: Ferrous iron 93.5 0.21 4.5E-06 49.5 6.9 106 353-469 2-115 (156)
403 PRK14964 DNA polymerase III su 93.5 0.57 1.2E-05 54.5 11.5 27 350-376 34-60 (491)
404 cd04156 ARLTS1 ARLTS1 subfamil 93.5 0.13 2.8E-06 49.3 5.4 21 354-374 2-22 (160)
405 cd03228 ABCC_MRP_Like The MRP 93.5 0.57 1.2E-05 46.3 10.2 27 351-377 28-54 (171)
406 cd00878 Arf_Arl Arf (ADP-ribos 93.4 0.13 2.8E-06 49.3 5.3 21 354-374 2-22 (158)
407 TIGR00382 clpX endopeptidase C 93.4 0.16 3.5E-06 57.7 7.0 26 351-376 116-141 (413)
408 PRK00440 rfc replication facto 93.4 0.47 1E-05 51.1 10.3 24 354-377 41-64 (319)
409 PF09848 DUF2075: Uncharacteri 93.4 0.56 1.2E-05 52.1 11.2 25 351-375 1-25 (352)
410 TIGR00416 sms DNA repair prote 93.4 0.16 3.5E-06 58.5 7.1 48 341-388 84-131 (454)
411 cd02035 ArsA ArsA ATPase funct 93.4 0.09 1.9E-06 54.3 4.5 38 353-390 1-38 (217)
412 COG1132 MdlB ABC-type multidru 93.4 0.25 5.5E-06 58.2 8.8 110 352-466 356-490 (567)
413 cd03229 ABC_Class3 This class 93.4 0.86 1.9E-05 45.3 11.4 26 351-376 26-51 (178)
414 COG1341 Predicted GTPase or GT 93.4 0.56 1.2E-05 52.7 10.8 41 348-388 70-110 (398)
415 PRK08760 replicative DNA helic 93.3 0.69 1.5E-05 53.7 12.0 116 341-466 220-346 (476)
416 COG3709 Uncharacterized compon 93.3 0.72 1.6E-05 46.0 10.2 27 351-377 5-31 (192)
417 cd03247 ABCC_cytochrome_bd The 93.3 0.63 1.4E-05 46.2 10.3 95 351-455 28-140 (178)
418 PRK06526 transposase; Provisio 93.3 0.053 1.2E-06 57.7 2.7 37 351-387 98-134 (254)
419 cd01130 VirB11-like_ATPase Typ 93.3 0.26 5.6E-06 49.6 7.5 27 351-377 25-51 (186)
420 PRK08006 replicative DNA helic 93.2 1 2.2E-05 52.3 13.1 109 350-466 223-343 (471)
421 cd04161 Arl2l1_Arl13_like Arl2 93.2 0.2 4.4E-06 49.0 6.4 21 354-374 2-22 (167)
422 PRK10536 hypothetical protein; 93.2 0.95 2.1E-05 48.4 11.7 22 353-374 76-97 (262)
423 TIGR01420 pilT_fam pilus retra 93.2 0.63 1.4E-05 51.6 10.9 27 351-377 122-148 (343)
424 cd04139 RalA_RalB RalA/RalB su 93.1 0.099 2.2E-06 49.9 4.1 21 353-373 2-22 (164)
425 KOG0781 Signal recognition par 93.1 0.63 1.4E-05 53.2 10.8 49 343-391 370-418 (587)
426 cd03213 ABCG_EPDR ABCG transpo 93.1 0.75 1.6E-05 46.5 10.6 25 351-375 35-59 (194)
427 PRK14969 DNA polymerase III su 93.1 0.75 1.6E-05 54.1 11.9 28 350-377 37-64 (527)
428 PRK09165 replicative DNA helic 93.1 0.9 2E-05 53.0 12.5 35 341-376 208-242 (497)
429 PHA02575 1 deoxynucleoside mon 93.0 0.066 1.4E-06 55.8 2.8 23 352-374 1-23 (227)
430 PRK14952 DNA polymerase III su 93.0 1.6 3.5E-05 51.9 14.6 28 350-377 34-61 (584)
431 COG5192 BMS1 GTP-binding prote 93.0 0.31 6.8E-06 56.2 8.1 92 350-461 68-164 (1077)
432 PTZ00454 26S protease regulato 93.0 0.33 7.2E-06 55.0 8.5 27 350-376 178-204 (398)
433 TIGR02655 circ_KaiC circadian 93.0 0.32 7E-06 56.5 8.6 48 341-388 253-300 (484)
434 cd01393 recA_like RecA is a b 93.0 0.62 1.3E-05 47.8 9.9 27 350-376 18-44 (226)
435 PRK12402 replication factor C 92.9 0.69 1.5E-05 50.3 10.8 38 353-390 38-77 (337)
436 PRK14086 dnaA chromosomal repl 92.9 0.99 2.1E-05 53.8 12.6 37 354-390 317-355 (617)
437 TIGR00635 ruvB Holliday juncti 92.9 0.088 1.9E-06 56.8 3.7 26 351-376 30-55 (305)
438 PRK06995 flhF flagellar biosyn 92.9 0.13 2.8E-06 59.5 5.2 42 350-391 255-298 (484)
439 PRK14088 dnaA chromosomal repl 92.8 0.69 1.5E-05 53.1 11.0 37 353-389 132-170 (440)
440 COG1222 RPT1 ATP-dependent 26S 92.8 0.31 6.8E-06 53.9 7.7 29 350-378 184-212 (406)
441 PHA02542 41 41 helicase; Provi 92.8 0.75 1.6E-05 53.4 11.2 49 340-388 179-227 (473)
442 TIGR02928 orc1/cdc6 family rep 92.8 0.43 9.2E-06 52.7 9.0 27 350-376 39-65 (365)
443 smart00173 RAS Ras subfamily o 92.8 0.094 2E-06 50.4 3.4 20 354-373 3-22 (164)
444 COG1855 ATPase (PilT family) [ 92.8 0.089 1.9E-06 59.5 3.5 37 349-385 261-297 (604)
445 cd01898 Obg Obg subfamily. Th 92.8 0.42 9E-06 46.1 7.9 20 354-373 3-22 (170)
446 TIGR02782 TrbB_P P-type conjug 92.8 0.67 1.4E-05 50.6 10.2 42 351-392 132-173 (299)
447 COG4615 PvdE ABC-type sideroph 92.7 0.1 2.2E-06 58.3 3.8 115 350-473 348-480 (546)
448 PRK05595 replicative DNA helic 92.7 1.1 2.3E-05 51.6 12.3 116 341-466 192-318 (444)
449 COG4608 AppF ABC-type oligopep 92.7 0.3 6.5E-06 52.2 7.2 107 351-466 39-167 (268)
450 PRK12269 bifunctional cytidyla 92.7 0.062 1.3E-06 66.2 2.4 29 351-379 34-62 (863)
451 cd03216 ABC_Carb_Monos_I This 92.7 0.83 1.8E-05 44.9 9.9 105 351-465 26-138 (163)
452 PRK10173 glucose-1-phosphatase 92.7 0.38 8.3E-06 54.8 8.5 67 560-626 33-124 (413)
453 cd04105 SR_beta Signal recogni 92.7 0.46 9.9E-06 48.5 8.3 22 353-374 2-23 (203)
454 cd01897 NOG NOG1 is a nucleola 92.6 0.49 1.1E-05 45.6 8.1 22 353-374 2-23 (168)
455 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.6 0.95 2.1E-05 43.7 10.1 95 351-465 26-123 (144)
456 PRK15455 PrkA family serine pr 92.6 0.097 2.1E-06 61.5 3.6 29 350-378 102-130 (644)
457 PF07726 AAA_3: ATPase family 92.5 0.063 1.4E-06 51.4 1.6 24 354-377 2-25 (131)
458 COG0466 Lon ATP-dependent Lon 92.5 0.3 6.6E-06 58.2 7.5 39 352-393 351-389 (782)
459 PRK14963 DNA polymerase III su 92.5 0.66 1.4E-05 54.2 10.3 28 350-377 35-62 (504)
460 PF02492 cobW: CobW/HypB/UreG, 92.5 0.17 3.7E-06 50.6 4.8 32 353-385 2-33 (178)
461 TIGR02639 ClpA ATP-dependent C 92.5 0.56 1.2E-05 57.3 10.1 25 352-376 204-228 (731)
462 cd03214 ABC_Iron-Siderophores_ 92.4 0.78 1.7E-05 45.7 9.5 26 351-376 25-50 (180)
463 PRK14950 DNA polymerase III su 92.4 0.75 1.6E-05 54.8 10.9 27 350-376 37-63 (585)
464 PRK05748 replicative DNA helic 92.4 1.2 2.7E-05 51.1 12.4 116 341-466 194-321 (448)
465 KOG0733 Nuclear AAA ATPase (VC 92.4 0.44 9.6E-06 55.9 8.5 28 349-376 543-570 (802)
466 PRK08506 replicative DNA helic 92.4 1.2 2.6E-05 51.7 12.3 108 350-466 191-309 (472)
467 PRK14489 putative bifunctional 92.4 0.17 3.6E-06 56.7 5.1 36 350-385 204-239 (366)
468 PF02367 UPF0079: Uncharacteri 92.4 0.15 3.3E-06 48.4 4.0 28 350-377 14-41 (123)
469 cd04119 RJL RJL (RabJ-Like) su 92.4 0.19 4E-06 48.1 4.8 21 354-374 3-23 (168)
470 cd02854 Glycogen_branching_enz 92.3 0.59 1.3E-05 42.6 7.7 60 32-98 6-70 (99)
471 TIGR03880 KaiC_arch_3 KaiC dom 92.3 0.54 1.2E-05 48.5 8.5 37 351-387 16-52 (224)
472 TIGR02640 gas_vesic_GvpN gas v 92.3 0.11 2.3E-06 55.5 3.3 32 353-387 23-54 (262)
473 PRK06835 DNA replication prote 92.3 0.14 3.1E-06 56.5 4.4 39 352-390 184-222 (329)
474 smart00178 SAR Sar1p-like memb 92.3 0.39 8.4E-06 47.9 7.2 24 350-373 16-39 (184)
475 CHL00206 ycf2 Ycf2; Provisiona 92.3 0.35 7.6E-06 63.3 8.2 37 350-389 1629-1665(2281)
476 PRK06851 hypothetical protein; 92.3 0.19 4.1E-06 56.3 5.4 36 350-385 29-64 (367)
477 PRK10463 hydrogenase nickel in 92.3 0.18 3.9E-06 54.7 5.1 37 348-385 101-137 (290)
478 PRK14954 DNA polymerase III su 92.3 1.4 3E-05 52.9 12.8 29 349-377 36-64 (620)
479 KOG0991 Replication factor C, 92.3 0.59 1.3E-05 49.1 8.4 138 353-514 50-193 (333)
480 PF06745 KaiC: KaiC; InterPro 92.3 0.4 8.6E-06 49.5 7.4 38 350-387 18-56 (226)
481 TIGR02760 TraI_TIGR conjugativ 92.3 0.94 2E-05 60.9 12.5 38 349-386 444-481 (1960)
482 PRK12422 chromosomal replicati 92.2 1.4 3E-05 50.8 12.4 35 353-387 143-177 (445)
483 cd00881 GTP_translation_factor 92.2 0.44 9.4E-06 46.5 7.3 23 354-376 2-24 (189)
484 TIGR00073 hypB hydrogenase acc 92.2 0.15 3.3E-06 52.1 4.2 29 348-376 19-47 (207)
485 TIGR01241 FtsH_fam ATP-depende 92.2 0.31 6.8E-06 56.6 7.3 26 351-376 88-113 (495)
486 smart00175 RAB Rab subfamily o 92.2 0.21 4.5E-06 47.7 4.9 21 354-374 3-23 (164)
487 PRK14729 miaA tRNA delta(2)-is 92.1 0.25 5.3E-06 54.0 5.9 86 351-445 4-104 (300)
488 COG1474 CDC6 Cdc6-related prot 92.1 2.7 5.8E-05 47.3 14.2 144 350-508 41-205 (366)
489 cd04149 Arf6 Arf6 subfamily. 92.1 0.39 8.5E-06 47.2 6.8 22 351-372 9-30 (168)
490 PRK00080 ruvB Holliday junctio 92.1 0.12 2.6E-06 56.7 3.5 27 351-377 51-77 (328)
491 PTZ00112 origin recognition co 92.0 2.5 5.4E-05 52.2 14.4 25 352-376 782-806 (1164)
492 TIGR02397 dnaX_nterm DNA polym 92.0 3.3 7.2E-05 45.4 14.8 27 350-376 35-61 (355)
493 cd01876 YihA_EngB The YihA (En 92.0 2 4.2E-05 40.6 11.4 19 354-372 2-20 (170)
494 PRK09111 DNA polymerase III su 92.0 1.3 2.8E-05 52.9 12.1 28 350-377 45-72 (598)
495 PRK07004 replicative DNA helic 92.0 1.3 2.8E-05 51.2 11.9 117 340-466 203-331 (460)
496 TIGR02768 TraA_Ti Ti-type conj 91.9 0.64 1.4E-05 56.9 9.8 33 353-385 370-402 (744)
497 cd04171 SelB SelB subfamily. 91.9 0.44 9.6E-06 45.3 6.8 22 352-373 1-22 (164)
498 PTZ00451 dephospho-CoA kinase; 91.9 0.11 2.4E-06 55.0 2.9 36 352-392 2-37 (244)
499 COG0467 RAD55 RecA-superfamily 91.9 0.34 7.5E-06 51.3 6.6 38 350-387 22-59 (260)
500 PRK09354 recA recombinase A; P 91.9 1 2.2E-05 50.2 10.4 38 350-387 59-96 (349)
No 1
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-74 Score=625.33 Aligned_cols=399 Identities=52% Similarity=0.875 Sum_probs=378.2
Q ss_pred CCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 004453 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (753)
Q Consensus 346 ~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d 425 (753)
-.+..|++|+|+|||++|||+++.+|.|||+|.|+++..||.++|||...+......||.+.|+++...+.++|..++.|
T Consensus 23 ~~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s~~ff~p~n~~~~~lr~~~a~~~l~D 102 (438)
T KOG0234|consen 23 LFMGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDSEPFFLPDNAEASKLRKQLALLALND 102 (438)
T ss_pred cccCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhcccccccccccCChhhhhhhHHHHHHHhhh
Confidence 34678999999999999999999999999999999999999999999887766667899999999999999999999999
Q ss_pred HHHHHh-cCCeEEEEeCCCCCHHHHHHHHHHH--cCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH
Q 004453 426 MISWMH-EGGQVGIFDATNSSRKRRNMLMKMA--EGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDF 502 (753)
Q Consensus 426 ~~~~l~-~~G~vVIlDATn~~~~~R~~l~~l~--~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df 502 (753)
+..|+. ++|+++|+||||.++++|+.+..+. +.++++.|||+.|+|++++.+||+.++..+|||+++ +.+.|+++|
T Consensus 103 ~~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~-~~e~a~~df 181 (438)
T KOG0234|consen 103 LLHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGK-DQEEALKDF 181 (438)
T ss_pred HHHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCC-CHHHHHHHH
Confidence 999998 6799999999999999999999994 689999999999999999999999999999999998 999999999
Q ss_pred HHHHhcccccccCCCC--C---ceEEEeecccCCccceeeeccccccCcceeEeeeccCCCCccEEEecccccccccCCC
Q 004453 503 KNRLANYEKVYEPVDE--G---SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGR 577 (753)
Q Consensus 503 ~~Ri~~y~~~yEpl~e--~---~yik~i~~~~~~g~~~~~n~i~gyl~~rIv~fL~n~~~~~r~IyLVRHGEs~~N~~~~ 577 (753)
++|+..|++.|||+++ + +|||+||+ |+++++|+|.|||++||||||||+|..+++|||+||||+++|+.++
T Consensus 182 l~ri~~ye~~YePld~~~d~~lsyik~in~----g~~~~~~~i~~~l~srivy~lmN~~~~pR~i~l~r~geS~~n~~gr 257 (438)
T KOG0234|consen 182 LKRIRNYEKYYEPLDRARDKDLSYIKIINV----GEEIVVHNIEGYLQSRIVYYLMNIHTTPRTIYLTRHGESEFNVEGR 257 (438)
T ss_pred HHHHHhhhhccCcCChhhccccceEEEecc----cceEEEecccceehhhhhhhhhccccCCceEEEEecCCCccccccc
Confidence 9999999999999993 2 99999999 9999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcCCCc--eeeccccccccCcCCCCCHHHHHH
Q 004453 578 IGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPK--IQWRALDEINAGVCDGMTYEEIKK 655 (753)
Q Consensus 578 ~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~g~~v--~~~~~L~Ei~~G~~eglt~~ei~~ 655 (753)
++||++|++.|.++|+.+++++.++.. .-..||||++.||+|||+.+ +.+. .+|..|+|++.|.|+|+|+++|.+
T Consensus 258 iggds~ls~~g~~ya~~l~~f~~~~~~--~dl~vwts~~~rti~ta~~l-~~~~~~~~~~~Ldei~ag~~~g~t~eeI~~ 334 (438)
T KOG0234|consen 258 IGGDSPLSERGSQYAKSLIKFVEEQSS--SDLDVWTSQRKRTIQTAEGL-KLDYSVEQWKALDEIDAGVCEGLTYEEIET 334 (438)
T ss_pred cCCcccccHHHHHHHHHHHHHHhhhcc--cCceeccchHHHHhhhHhhc-CcchhhhhHhhcCcccccccccccHHHHHH
Confidence 999999999999999999999987632 22589999999999999955 5444 899999999999999999999999
Q ss_pred hChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEE
Q 004453 656 NMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTII 735 (753)
Q Consensus 656 ~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~ 735 (753)
.||+++.....|+++||||+||||.|+.+|++|+|.+|+++.. |+||+|..+||||++||+++++...+.+.+|.++|+
T Consensus 335 ~~p~e~~~r~~dky~yry~~gESy~D~v~RlePvImElEr~~~-Vlvi~Hqavircll~Yf~~~~~~e~p~l~~plhtv~ 413 (438)
T KOG0234|consen 335 NYPEEFALRDKDKYRYRYPGGESYSDLVQRLEPVIMELERQEN-VLVITHQAVIRCLLAYFLNCSPVELPYLTVPLHTVI 413 (438)
T ss_pred hCchhhhhccCCcceeecCCCCCHHHHHHhhhhHhHhhhhccc-EEEEecHHHHHHHHHHHhcCCHhhcccccccceeEE
Confidence 9999999999999999999999999999999999999999886 999999999999999999999999999999999999
Q ss_pred EEEECCCceEEEEEEcCC
Q 004453 736 EIQMGVTGVQEKRYKLMD 753 (753)
Q Consensus 736 ~L~~~~~g~~~~r~~l~~ 753 (753)
+|++.++|+.++.+++.+
T Consensus 414 ~l~~~~y~~~~e~~~~~~ 431 (438)
T KOG0234|consen 414 KLTPDAYGTTVESIRLND 431 (438)
T ss_pred EEeeccccceeEEeeccc
Confidence 999999999999888754
No 2
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=100.00 E-value=7.3e-66 Score=605.88 Aligned_cols=388 Identities=28% Similarity=0.530 Sum_probs=344.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~ 429 (753)
++++|+|+||||+||||+|++|+++|+|.++++++|+.++|||.+.+. ...++.+.+.... ..+++..+++|+.+|
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~--~~~~~~~~~~~~~--e~~~~~~~~~d~~~~ 289 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERR--GGAVSSPTGAAEV--EFRIAKAIAHDMTTF 289 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccC--CCCcCCCCCHHHH--HHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999976432 2334444454433 356788888899999
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCC----ceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 004453 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGN----CKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 504 (753)
Q Consensus 430 l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~----~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~ 504 (753)
+.+.|.++|+||||.++.+|..+.+. .+.+ ++++|||++|++.+.+++|+.+++..+|+ +++++.++|++
T Consensus 290 v~~~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~~-----~~e~~~~~~~~ 364 (664)
T PTZ00322 290 ICKTDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMFPG-----APEDFVDRYYE 364 (664)
T ss_pred HhcCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHH
Confidence 99888899999999999999887766 4444 58999999999999999999888777765 47999999999
Q ss_pred HHhcccccccCCCC----C-ceEEEeecccCCccceeeeccccccCcceeEeeeccCCCCccEEEecccccccccCCCcC
Q 004453 505 RLANYEKVYEPVDE----G-SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIG 579 (753)
Q Consensus 505 Ri~~y~~~yEpl~e----~-~yik~i~~~~~~g~~~~~n~i~gyl~~rIv~fL~n~~~~~r~IyLVRHGEs~~N~~~~~~ 579 (753)
|++.|+++||+++. + +|||+ +. |++|.+|+|+|||++||||||||+|+++|+|||+||||+.+|..++++
T Consensus 365 ~~~~~~~~Ye~~~~~~d~~~~~ik~-~~----g~~~~~~~i~g~l~~~i~~~l~n~~~~~m~i~LiRHGeT~~n~~~r~~ 439 (664)
T PTZ00322 365 VIEQLEAVYKSLNPVTDCDLTYIRI-ED----TQTFSLNNISGWMPSRLAYMLHNLNPTPMNLYLTRAGEYVDLLSGRIG 439 (664)
T ss_pred HHHHHHhhcccCCccccCCCceEEE-ec----CcEEEEeccccccchhhheeeeeeccCCceEEEEecccchhhhcCccC
Confidence 99999999999873 2 89996 54 899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc--------------------CCCceeeccccc
Q 004453 580 GDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA--------------------GFPKIQWRALDE 639 (753)
Q Consensus 580 GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~--------------------g~~v~~~~~L~E 639 (753)
||+|||+.|++||++++++|.... ...++.|||||++||+|||+++. ++++..++.|+|
T Consensus 440 Gd~pLt~~G~~qA~~l~~~l~~~~-~~~~~~V~sSpl~Ra~~TA~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~L~E 518 (664)
T PTZ00322 440 GNSRLTERGRAYSRALFEYFQKEI-STTSFTVMSSCAKRCTETVHYFAEESILQQSTASAASSQSPSLNCRVLYFPTLDD 518 (664)
T ss_pred CCCccCHHHHHHHHHHHHHHHhcc-CCCCcEEEcCCcHHHHHHHHHHHhccccccccccccccccccccccccchhhhCc
Confidence 999999999999999999886431 23467999999999999998883 335677899999
Q ss_pred cccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHH-HHHHHHHHHHHcCCCcEEEEecHHHHHHHHHHHhC
Q 004453 640 INAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVI-QRLEPVIIELERQRAPVVVISHQAVLRALYAYFAD 718 (753)
Q Consensus 640 i~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~-~Rl~~~I~eL~~e~~~VLIVSHg~vIr~Lla~llg 718 (753)
+++|.|||++++++++.||+.+..|..+++.+++|+|||+.|+. +|+++++.++.+..++|||||||++||+|++|+++
T Consensus 519 i~fG~wEG~t~~ei~~~~p~~~~~~~~d~~~~~~P~GES~~d~~~~R~~~~i~~l~~~~~~ilvVsHg~vir~ll~~~~~ 598 (664)
T PTZ00322 519 INHGDCEGQLLSDVRRTMPNTLQSMKADPYYTAWPNGECIHQVFNARLEPHIHDIQASTTPVLVVSHLHLLQGLYSYFVT 598 (664)
T ss_pred CCCcccCCCCHHHHHHhCcHHHHHHHhCCCcCCCCCCcCHHHHHHHHHHHHHHHHHccCCCEEEEeCcHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999976 79999999998887899999999999999999999
Q ss_pred C-----CCCCCCccccCCcEEEEEEECCCceEEEEEEcC
Q 004453 719 R-----PLKEIPHIETPLHTIIEIQMGVTGVQEKRYKLM 752 (753)
Q Consensus 719 ~-----~~~~~~~l~~p~~sI~~L~~~~~g~~~~r~~l~ 752 (753)
. +.+.++.+.+|++++++|++..++.....+++.
T Consensus 599 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~l~ 637 (664)
T PTZ00322 599 DGDNIVAPQNAYKIDIPFEHVIKIRMVGFNRVAELIDLS 637 (664)
T ss_pred CCccccCcccCceeeccCCcEEEEEEeccCceEEEEech
Confidence 5 677888999999999999999888888888874
No 3
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=100.00 E-value=7.1e-53 Score=431.93 Aligned_cols=213 Identities=56% Similarity=0.950 Sum_probs=170.7
Q ss_pred cccCCC-CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHH
Q 004453 342 QMLGPK-EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAA 420 (753)
Q Consensus 342 ~~~~~~-~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~ 420 (753)
+++++. +.+|++|+||||||+|||++|++|+|||.|+|+++++||+|+|||...+...+..||++.|+++.+.++++|.
T Consensus 2 ~~~~~~~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~ 81 (222)
T PF01591_consen 2 TESGRLFHAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAK 81 (222)
T ss_dssp -----------EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHH
T ss_pred CcccccCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHH
Confidence 455665 7889999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred HHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 004453 421 LAMEDMISWMH-EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAG 498 (753)
Q Consensus 421 ~~l~d~~~~l~-~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~a 498 (753)
.+|+||++||+ ++|+++|+||||.++++|+.+.+. .+.+++++|||++|+|+++|++||+.++..+|||.++ ++++|
T Consensus 82 ~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~-~~e~A 160 (222)
T PF01591_consen 82 EALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGM-DPEEA 160 (222)
T ss_dssp HHHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS--HHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccC-CHHHH
Confidence 99999999999 779999999999999999999998 7788999999999999999999999999988999999 99999
Q ss_pred HHHHHHHHhcccccccCCCC---C--ceEEEeecccCCccceeeeccccccCcceeEeeeccCCCC
Q 004453 499 LQDFKNRLANYEKVYEPVDE---G--SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTP 559 (753)
Q Consensus 499 l~df~~Ri~~y~~~yEpl~e---~--~yik~i~~~~~~g~~~~~n~i~gyl~~rIv~fL~n~~~~~ 559 (753)
++||++|++.|+++||||++ + +|||+||+ |+++++|+|+|||++||||||||+|++|
T Consensus 161 ~~Df~~RI~~Ye~~YEpl~~e~d~~lsyIKiin~----g~~v~~n~i~GyL~srIv~~LmNlh~~P 222 (222)
T PF01591_consen 161 IEDFKKRIEHYEKVYEPLDEEEDEDLSYIKIINV----GEKVIVNNISGYLQSRIVFYLMNLHIKP 222 (222)
T ss_dssp HHHHHHHHHHHHTT-----TTTTTTSEEEEEETT----TTEEEEE---SHHHHHHHHHHTT---S-
T ss_pred HHHHHHHHHhhcccccccccccccCceEEEEEcC----CceEEEecccCEeHHHHHHHHhhcCCCC
Confidence 99999999999999999992 2 99999999 9999999999999999999999999875
No 4
>PRK13463 phosphatase PhoE; Provisional
Probab=100.00 E-value=3.2e-33 Score=284.32 Aligned_cols=188 Identities=23% Similarity=0.346 Sum_probs=169.1
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCcee
Q 004453 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQ 633 (753)
Q Consensus 559 ~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g~~v~~ 633 (753)
+++||||||||+.+|..++++| |+|||+.|++||+.+++.|. ..+++.|||||+.||+|||+++ .+.++.+
T Consensus 2 ~~~i~lvRHG~t~~n~~~~~~G~~d~~Lt~~G~~Qa~~~~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 77 (203)
T PRK13463 2 KTTVYVTRHGETEWNVAKRMQGRKNSALTENGILQAKQLGERMK----DLSIHAIYSSPSERTLHTAELIKGERDIPIIA 77 (203)
T ss_pred ceEEEEEeCCCCccchhCcccCCCCCCcCHHHHHHHHHHHHHhc----CCCCCEEEECCcHHHHHHHHHHHhcCCCCceE
Confidence 3789999999999999999888 99999999999999998775 4578999999999999999998 4678899
Q ss_pred eccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEecHHHHHH
Q 004453 634 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRA 711 (753)
Q Consensus 634 ~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e--~~~VLIVSHg~vIr~ 711 (753)
++.|+|+++|.|+|++.+++.+.||+.+..|+.++..+++|+|||+.++.+|+..++.++... +++|||||||++|++
T Consensus 78 ~~~l~E~~~G~~eG~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~l~~i~~~~~~~~vlvVsHg~~ir~ 157 (203)
T PRK13463 78 DEHFYEINMGIWEGQTIDDIERQYPDDIQLFWNEPHLFQSTSGENFEAVHKRVIEGMQLLLEKHKGESILIVSHAAAAKL 157 (203)
T ss_pred CcCceeCCCCccCCCcHHHHhhhCHHHHHHHHhChhccCCCCCeEHHHHHHHHHHHHHHHHHhCCCCEEEEEeChHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998543 568999999999999
Q ss_pred HHHHHhCCCCCCCCcc-ccCCcEEEEEEECCCceEEEEEE
Q 004453 712 LYAYFADRPLKEIPHI-ETPLHTIIEIQMGVTGVQEKRYK 750 (753)
Q Consensus 712 Lla~llg~~~~~~~~l-~~p~~sI~~L~~~~~g~~~~r~~ 750 (753)
+++++++.+.+..+.+ .+++++++.++++..++....++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n 197 (203)
T PRK13463 158 LVGHFAGIEIENVWDDPFMHSASLSIIEFEDGKGEVKQFA 197 (203)
T ss_pred HHHHHhCCCHHHHhhccCccCceEEEEEEeCCcEEEEEec
Confidence 9999999998876654 36788888888876676666665
No 5
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=100.00 E-value=3.8e-33 Score=282.54 Aligned_cols=187 Identities=24% Similarity=0.256 Sum_probs=170.6
Q ss_pred ccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCceee
Q 004453 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQW 634 (753)
Q Consensus 560 r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g~~v~~~ 634 (753)
++||||||||+.+|..+++.| |.|||+.|++||+.+++.|. ..+++.|||||+.||+|||+++ .+.++.++
T Consensus 1 ~~i~lvRHG~t~~n~~~~~~G~~d~pLt~~G~~Qa~~~~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 76 (199)
T PRK15004 1 MRLWLVRHGETQANVDGLYSGHAPTPLTARGIEQAQNLHTLLR----DVPFDLVLCSELERAQHTARLVLSDRQLPVHII 76 (199)
T ss_pred CeEEEEeCCCCccccCCcEeCCCCCCcCHHHHHHHHHHHHHHh----CCCCCEEEECchHHHHHHHHHHHhcCCCCceeC
Confidence 479999999999999998888 99999999999999998875 5578999999999999999999 56788899
Q ss_pred ccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEecHHHHHHH
Q 004453 635 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRAL 712 (753)
Q Consensus 635 ~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e--~~~VLIVSHg~vIr~L 712 (753)
+.|+|+++|.|+|++.+++.+.+|+.+..|..++....+|+|||+.|+.+|+..+++++.+. +++|||||||++|+++
T Consensus 77 ~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gEs~~~~~~Rv~~~l~~l~~~~~~~~iliVsHg~~i~~l 156 (199)
T PRK15004 77 PELNEMFFGDWEMRHHRDLMQEDAENYAAWCNDWQHAIPTNGEGFQAFSQRVERFIARLSAFQHYQNLLIVSHQGVLSLL 156 (199)
T ss_pred hhheeCCCcccCCCCHHHHHHHCHHHHHHHHhChhhcCCCCCcCHHHHHHHHHHHHHHHHHhCCCCeEEEEcChHHHHHH
Confidence 99999999999999999999999999999998888888999999999999999999999764 5689999999999999
Q ss_pred HHHHhCCCCCCCCccccCCcEEEEEEECCCceEEEEEE
Q 004453 713 YAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYK 750 (753)
Q Consensus 713 la~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~~~r~~ 750 (753)
++++++.+.+.++.+.+++++++.|+.+..++....++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n 194 (199)
T PRK15004 157 IARLLGMPAEAMWHFRVEQGCWSAIDINQGFATLRVLN 194 (199)
T ss_pred HHHHhCCCHHHHhccccCCceEEEEEecCCcEEEEEec
Confidence 99999999988888999999999999876666655554
No 6
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=2e-33 Score=290.91 Aligned_cols=189 Identities=22% Similarity=0.260 Sum_probs=164.9
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc---C---CC
Q 004453 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA---G---FP 630 (753)
Q Consensus 559 ~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~---g---~~ 630 (753)
|++||||||||+.+|..++++| |.|||+.|++||+.+++.|... ..+++.|||||+.||+|||++|. + .+
T Consensus 1 m~~l~LVRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpL~Ra~qTA~~i~~~~~~~~~~ 78 (228)
T PRK14116 1 MAKLVLIRHGQSEWNLSNQFTGWVDVDLSEKGVEEAKKAGRLIKEA--GLEFDQAYTSVLTRAIKTLHYALEESDQLWIP 78 (228)
T ss_pred CCEEEEEeCCCCCCccccCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCcCCCC
Confidence 4689999999999999999999 9999999999999999988742 35789999999999999999982 2 56
Q ss_pred ceeeccccccccCcCCCCCHHHHHHhChHH-HHHHhcC------------------------cCCCCCCCCCCHHHHHHH
Q 004453 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKD------------------------KLRYRYPRGESYLDVIQR 685 (753)
Q Consensus 631 v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~-~~~~~~d------------------------~~~~r~P~GES~~dv~~R 685 (753)
+...+.|+|+++|.|||++++++.+.+|+. +..|..+ ...+++|+|||+.++.+|
T Consensus 79 ~~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgGEs~~~~~~R 158 (228)
T PRK14116 79 ETKTWRLNERHYGALQGLNKKETAEKYGDEQVHIWRRSYDVLPPLLDADDEGSAAKDRRYANLDPRIIPGGENLKVTLER 158 (228)
T ss_pred cccCcccccccchhhcCCCHHHHHHHhhhhHHHHHhhcccccCcccccccccccccchhhhccCccCCCCCCCHHHHHHH
Confidence 778899999999999999999999999986 5556543 113468999999999999
Q ss_pred HHHHHHHHHc----CCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCceEEEEE
Q 004453 686 LEPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRY 749 (753)
Q Consensus 686 l~~~I~eL~~----e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~~~r~ 749 (753)
+.+++.++.. .+++|||||||++|+++++++++.+.+.++.+.+++++++.|+.+..+..+.+-
T Consensus 159 v~~~l~~~i~~~~~~~~~vlvVsHg~vir~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (228)
T PRK14116 159 VIPFWEDHIAPDLLDGKNVIIAAHGNSLRALTKYIENISDEDIMNLEMATGEPVVYDFDEKLNVVSKE 226 (228)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEcChHHHHHHHHHHhCCCHHHHHhccCCCCCeEEEEECCCCCccccc
Confidence 9999998642 357899999999999999999999999999999999999999998877665543
No 7
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=8.3e-33 Score=286.22 Aligned_cols=188 Identities=23% Similarity=0.257 Sum_probs=161.4
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc------CCC
Q 004453 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GFP 630 (753)
Q Consensus 559 ~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~------g~~ 630 (753)
|++||||||||+.+|..++++| |.|||+.|++||++++++|... ..+++.|||||++||+|||+++. +.+
T Consensus 1 m~~l~LvRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpL~Ra~~TA~~i~~~~~~~~~~ 78 (228)
T PRK14119 1 MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVREN--NIAIDVAFTSLLTRALDTTHYILTESKQQWIP 78 (228)
T ss_pred CCEEEEEeCCCCCcccCCCccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEeCccHHHHHHHHHHHHhcccCCCC
Confidence 4689999999999999999998 9999999999999999988743 35789999999999999999983 256
Q ss_pred ceeeccccccccCcCCCCCHHHHHHhChHH-HHHHhcCcC------------------------CCCCCCCCCHHHHHHH
Q 004453 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDVIQR 685 (753)
Q Consensus 631 v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~-~~~~~~d~~------------------------~~r~P~GES~~dv~~R 685 (753)
+..++.|+|+++|.|||++++++++.+|+. +..|..+.. ...+|+|||+.++.+|
T Consensus 79 ~~~~~~LrE~~fG~weG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~R 158 (228)
T PRK14119 79 VYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVR 158 (228)
T ss_pred eeECCCccccccccccCCcHHHHHHHccHHHHHHHHcccccCCCcccccccccccccccccccccccCCCCCCHHHHHHH
Confidence 788899999999999999999999999986 445554311 1236899999999999
Q ss_pred HHHHHHHHHc----CCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCceEEEE
Q 004453 686 LEPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKR 748 (753)
Q Consensus 686 l~~~I~eL~~----e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~~~r 748 (753)
+.+++.++.. .+++|||||||++|+++++++++.+.+.++.+.++++++++++.+...-.+..
T Consensus 159 v~~~l~~~~~~~~~~~~~vlvVsHg~vir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (228)
T PRK14119 159 VIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEVIDK 225 (228)
T ss_pred HHHHHHHHHHhhccCCCeEEEEeChHHHHHHHHHHhCCCHHHHhhcCCCCCceEEEEECCCCceecc
Confidence 9999999743 35789999999999999999999999888889999999999998766444333
No 8
>PRK01112 phosphoglyceromutase; Provisional
Probab=100.00 E-value=1.3e-32 Score=284.80 Aligned_cols=186 Identities=26% Similarity=0.246 Sum_probs=168.1
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc---------
Q 004453 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA--------- 627 (753)
Q Consensus 559 ~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~--------- 627 (753)
|++||||||||+.+|..++++| |.+||+.|++||++++++|. ..+++.|||||+.||+|||+.+.
T Consensus 1 M~~L~LvRHGqt~~n~~~~~~G~~D~~Lte~G~~Qa~~l~~~L~----~~~~d~iysSpl~Ra~qTA~~i~~~~~~~~~~ 76 (228)
T PRK01112 1 MALLILLRHGQSVWNAKNLFTGWVDIPLSQQGIAEAIAAGEKIK----DLPIDCIFTSTLVRSLMTALLAMTNHSSGKIP 76 (228)
T ss_pred CcEEEEEeCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHhh----cCCCCEEEEcCcHHHHHHHHHHHHhhcccccc
Confidence 4789999999999999999999 99999999999999998886 45899999999999999999873
Q ss_pred -----------------------CCCceeeccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHH
Q 004453 628 -----------------------GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQ 684 (753)
Q Consensus 628 -----------------------g~~v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~ 684 (753)
..++...+.|+|+++|.|+|++++++.+.+|+.+..++.+++.+++|+|||+.|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~GES~~d~~~ 156 (228)
T PRK01112 77 YIVHEEDDKKWMSRIYSDEEPEQMIPLFQSSALNERMYGELQGKNKAETAEKFGEEQVKLWRRSYKTAPPQGESLEDTGQ 156 (228)
T ss_pred cccccccccccccccccccccccCCCeeecCccccccccccCCCCHHHHHHHCcHHHHHHHhCcCCCCCCCCCCHHHHHH
Confidence 135667899999999999999999999999988877778888889999999999999
Q ss_pred HHHHHHHHH-Hc---CCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCceEEEE
Q 004453 685 RLEPVIIEL-ER---QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKR 748 (753)
Q Consensus 685 Rl~~~I~eL-~~---e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~~~r 748 (753)
|+.+++.++ .+ .+++|||||||++|+++++++++.+.+.++.+.+++++++.++.+..+.+.++
T Consensus 157 Rv~~~l~~~~~~~~~~~~~ilVVsHg~vir~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (228)
T PRK01112 157 RTLPYFQNRILPHLQQGKNVFVSAHGNSLRSLIMDLEKLSEEEVLSLELPTGKPIVYEWTGQKFEKHK 224 (228)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhCCCHHHHhhcccCCcceEEEEECCCCcccch
Confidence 999999975 22 45789999999999999999999999999999999999999999888877653
No 9
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=1.7e-32 Score=284.35 Aligned_cols=190 Identities=22% Similarity=0.196 Sum_probs=164.7
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc------CCC
Q 004453 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GFP 630 (753)
Q Consensus 559 ~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~------g~~ 630 (753)
|++||||||||+++|..++++| |.|||++|++||+.+++.|... ..+++.|||||++||+|||+++. +.+
T Consensus 1 m~~l~LvRHG~t~~n~~~~~qG~~D~~Lt~~G~~qa~~~~~~l~~~--~~~~~~i~sSpl~Ra~~TA~~i~~~~~~~~~~ 78 (230)
T PRK14117 1 MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEA--GIEFDLAFTSVLKRAIKTTNLALEASDQLWVP 78 (230)
T ss_pred CCEEEEEeCccccCcccCCcCCCCCCCcCHHHHHHHHHHHHHHHHc--CCCCCEEEECCcHHHHHHHHHHHHhcccCCCC
Confidence 4789999999999999999999 9999999999999999988643 35789999999999999999872 357
Q ss_pred ceeeccccccccCcCCCCCHHHHHHhChHH-HHHHhcC------------------------cCCCCCCCCCCHHHHHHH
Q 004453 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKD------------------------KLRYRYPRGESYLDVIQR 685 (753)
Q Consensus 631 v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~-~~~~~~d------------------------~~~~r~P~GES~~dv~~R 685 (753)
+...+.|+|+++|.|||++++++.+.+|+. +..|..+ ...+++|+|||+.++.+|
T Consensus 79 ~~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~R 158 (230)
T PRK14117 79 VEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPAMAKDDEYSAHTDRRYASLDDSVIPDAENLKVTLER 158 (230)
T ss_pred ceeCCccccccchhhcCCCHHHHHHHccHHHHHHHhcccccCCCcccccccccccccccccccccCCCCCCCCHHHHHHH
Confidence 888999999999999999999999999986 4445432 123467999999999999
Q ss_pred HHHHHHHHH--c--CCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCceEEEEEE
Q 004453 686 LEPVIIELE--R--QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYK 750 (753)
Q Consensus 686 l~~~I~eL~--~--e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~~~r~~ 750 (753)
+.+++.++. . .+++|||||||++|++|++++++.+......+.++++++++|+.+.....+..|-
T Consensus 159 v~~~l~~~~~~~~~~~~~vlvVsHg~~ir~ll~~~lg~~~~~~~~~~~~n~s~~~i~~~~~~~~~~~~~ 227 (230)
T PRK14117 159 ALPFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKGLSDDEIMDVEIPNFPPLVFEFDEKLNVVKEYY 227 (230)
T ss_pred HHHHHHHHHHhhccCCCEEEEEeChHHHHHHHHHHhCcCHHHHhhcCCCCceEEEEEECCCCceeeccc
Confidence 999999974 2 2468999999999999999999999988888999999999999977777666653
No 10
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=4.5e-32 Score=280.68 Aligned_cols=181 Identities=20% Similarity=0.234 Sum_probs=157.8
Q ss_pred ccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc------CCCc
Q 004453 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GFPK 631 (753)
Q Consensus 560 r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~------g~~v 631 (753)
|+||||||||+.+|..++++| |.|||+.|++||+.+++.|... ..+++.|||||+.||+|||++|. +.++
T Consensus 1 m~l~LvRHG~t~~n~~~~~~G~~d~~Lt~~G~~qa~~~~~~l~~~--~~~~d~i~sSpl~Ra~~TA~~i~~~~~~~~~~~ 78 (227)
T PRK14118 1 MELVFIRHGFSEWNAKNLFTGWRDVNLTERGVEEAKAAGKKLKEA--GYEFDIAFTSVLTRAIKTCNIVLEESNQLWIPQ 78 (227)
T ss_pred CEEEEEecCCCccccccCcCCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEEeChHHHHHHHHHHHHhcCCCCCCe
Confidence 479999999999999999999 9999999999999999988753 35789999999999999999992 2567
Q ss_pred eeeccccccccCcCCCCCHHHHHHhChHH-HHHHhcCc------------------------CCCCCCCCCCHHHHHHHH
Q 004453 632 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQRL 686 (753)
Q Consensus 632 ~~~~~L~Ei~~G~~eglt~~ei~~~~P~~-~~~~~~d~------------------------~~~r~P~GES~~dv~~Rl 686 (753)
...+.|+|+++|.|||++++++.+.+|+. +..|..+. ..+.+|+|||+.++.+|+
T Consensus 79 ~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~Rv 158 (227)
T PRK14118 79 VKNWRLNERHYGALQGLDKKATAEQYGDEQVHIWRRSYDTLPPDLDPQDPNSAHNDRRYAHLPADVVPDAENLKVTLERV 158 (227)
T ss_pred ecCCccccccCccccCCcHHHHHHHhhHHHHHHHHhccccCCCccccccccccccchhhccCcCCCCCCCCCHHHHHHHH
Confidence 78889999999999999999999999976 44454321 124579999999999999
Q ss_pred HHHHHHHHc----CCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCC
Q 004453 687 EPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVT 742 (753)
Q Consensus 687 ~~~I~eL~~----e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~ 742 (753)
.+++.++.. .+++|||||||++|++|++++++.+.+.++.+.++++++++|..+..
T Consensus 159 ~~~l~~~~~~~~~~~~~vlvVsHggvir~ll~~~l~~~~~~~~~~~i~~~s~~~~~~~~~ 218 (227)
T PRK14118 159 LPFWEDQIAPALLSGKRVLVAAHGNSLRALAKHIEGISDADIMDLEIPTGQPLVYKLDDN 218 (227)
T ss_pred HHHHHHHHhhhhcCCCeEEEEeCHHHHHHHHHHHhCCCHHHHhcccCCCCceEEEEECCC
Confidence 999998643 35789999999999999999999999888899999999999998655
No 11
>PRK01295 phosphoglyceromutase; Provisional
Probab=99.98 E-value=9.1e-32 Score=274.50 Aligned_cols=183 Identities=25% Similarity=0.294 Sum_probs=161.4
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CC
Q 004453 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 630 (753)
Q Consensus 559 ~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g---~~ 630 (753)
+++||||||||+++|..++++| |.|||+.|++||+.++++|... ..+++.|||||+.||+|||++| ++ .+
T Consensus 2 ~~~i~LVRHGet~~n~~~~~~G~~d~~Lt~~G~~qA~~~~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 79 (206)
T PRK01295 2 SRTLVLVRHGQSEWNLKNLFTGWRDPDLTEQGVAEAKAAGRKLKAA--GLKFDIAFTSALSRAQHTCQLILEELGQPGLE 79 (206)
T ss_pred CceEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEeCCcHHHHHHHHHHHHHcCCCCCC
Confidence 4789999999999999999888 9999999999999999988753 4578999999999999999999 33 67
Q ss_pred ceeeccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHH-HHHHc---CCCcEEEEecH
Q 004453 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVI-IELER---QRAPVVVISHQ 706 (753)
Q Consensus 631 v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I-~eL~~---e~~~VLIVSHg 706 (753)
+.+++.|+|+++|.|+|++.+++++.+|+.+..++.+++.+++|+|||+.|+.+|+.+++ ..+.. .+++|||||||
T Consensus 80 ~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVtHg 159 (206)
T PRK01295 80 TIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVLPYYLQEILPRVLRGERVLVAAHG 159 (206)
T ss_pred eEECCcccccccccccCCcHHHHHHHchHHHHHHhhcccCCCCcCCCCHHHHHHHHHHHHHHHHHHhccCCCeEEEEcCh
Confidence 889999999999999999999999999987777667777889999999999999999975 45532 35789999999
Q ss_pred HHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCc
Q 004453 707 AVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTG 743 (753)
Q Consensus 707 ~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g 743 (753)
++|+++++++++.+.+.++.+.+.++.++.+..+...
T Consensus 160 ~~ir~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (206)
T PRK01295 160 NSLRALVMVLDGLTPEQILKLELATGVPIVYRLNADS 196 (206)
T ss_pred HHHHHHHHHHhCCCHHHHhhcCCCCCCcEEEEecCCC
Confidence 9999999999999999888999999987777765443
No 12
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=99.98 E-value=1.5e-31 Score=271.68 Aligned_cols=184 Identities=25% Similarity=0.277 Sum_probs=164.0
Q ss_pred cEEEecccccccccCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCceee
Q 004453 561 PILLTRHGESRDNVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQW 634 (753)
Q Consensus 561 ~IyLVRHGEs~~N~~~~~~G---D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g~~v~~~ 634 (753)
+||||||||+.+|..++++| |.|||+.|++||++++++|. ..+++.|||||+.||+|||+++ .+.++..+
T Consensus 1 ~i~lvRHG~t~~n~~~~~~g~~~d~~Lt~~G~~qa~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 76 (204)
T TIGR03848 1 TVILVRHGRSTANTAGTLAGRTPGVDLDERGREQAAALAERLA----DLPIAAIVSSPLERCRETAEPIAEARGLPPRVD 76 (204)
T ss_pred CEEEEeCCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHHh----cCCCCEEEeCcHHHHHHHHHHHHHhcCCCceEC
Confidence 58999999999999888887 48999999999999998876 4589999999999999999998 46789999
Q ss_pred ccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHc-------CCCcEEEEecHH
Q 004453 635 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER-------QRAPVVVISHQA 707 (753)
Q Consensus 635 ~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~-------e~~~VLIVSHg~ 707 (753)
+.|+|+++|.|+|++++++.+. ..+..|..++..+.+|+|||+.++.+|+.+++.++.. .+++|||||||+
T Consensus 77 ~~L~E~~~G~~eG~~~~e~~~~--~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsHg~ 154 (204)
T TIGR03848 77 ERLGECDYGDWTGRELKELAKE--PLWPVVQAHPSAAVFPGGESLAQVQARAVAAVREHDARLAAEHGPDAVWVACSHGD 154 (204)
T ss_pred cccccCCCCeeCCcCHHHHhCc--HHHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCh
Confidence 9999999999999999998754 3566777788888999999999999999999998753 245799999999
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCceEEEEEE
Q 004453 708 VLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYK 750 (753)
Q Consensus 708 vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~~~r~~ 750 (753)
+|+++++++++.+.+.++.+.++++++++|+....++....++
T Consensus 155 ~ir~ll~~~lg~~~~~~~~~~~~n~sit~l~~~~~~~~~~~~n 197 (204)
T TIGR03848 155 VIKSVLADALGMHLDLFQRIVVDPCSVSVVRYTPLRPFVLRVN 197 (204)
T ss_pred HHHHHHHHHhCCCHHHhheeeeCCCeEEEEEEeCCceEEEEee
Confidence 9999999999999988888999999999999987777766655
No 13
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=99.98 E-value=3.3e-31 Score=277.49 Aligned_cols=192 Identities=26% Similarity=0.298 Sum_probs=167.2
Q ss_pred ccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CCc
Q 004453 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FPK 631 (753)
Q Consensus 560 r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g---~~v 631 (753)
|+||||||||+.+|..++++| |.|||+.|++||+.++++|... ..+++.|||||++||+|||++| ++ .++
T Consensus 1 ~~i~LVRHGqt~~n~~~~~~G~~D~pLte~G~~QA~~la~~L~~~--~~~~d~IysSpl~Ra~qTA~~i~~~~~~~~~~~ 78 (247)
T PRK14115 1 TKLVLIRHGESQWNKENRFTGWTDVDLSEKGVSEAKAAGKLLKEE--GYTFDVAYTSVLKRAIRTLWIVLDELDQMWLPV 78 (247)
T ss_pred CEEEEEECCCcccccccCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEEcCCHHHHHHHHHHHHHcCCCCCCc
Confidence 579999999999999999888 9999999999999999988743 4578999999999999999999 33 367
Q ss_pred eeeccccccccCcCCCCCHHHHHHhChHH-HHHHhcCcC------------------------CCCCCCCCCHHHHHHHH
Q 004453 632 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDVIQRL 686 (753)
Q Consensus 632 ~~~~~L~Ei~~G~~eglt~~ei~~~~P~~-~~~~~~d~~------------------------~~r~P~GES~~dv~~Rl 686 (753)
...+.|+|+++|.|+|++++++.+.+|+. +..|..+.. .+.+|+|||+.++..|+
T Consensus 79 ~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv 158 (247)
T PRK14115 79 EKSWRLNERHYGALQGLNKAETAAKYGDEQVKIWRRSYDVPPPALEKDDERYPGHDPRYAKLPEEELPLTESLKDTIARV 158 (247)
T ss_pred eECccccccccccccCCCHHHHHHHhhHHHHHHHhcccccCCCcccccccccccccchhhcccCCCCCCCCcHHHHHHHH
Confidence 88999999999999999999999999986 445543210 23579999999999999
Q ss_pred HHHHHHHHc----CCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCceEEEEEEcCC
Q 004453 687 EPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYKLMD 753 (753)
Q Consensus 687 ~~~I~eL~~----e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~~~r~~l~~ 753 (753)
..+|+++.. .+++|||||||++|+++++++++.+.+.+..+.+++++++.|+.+......++|-|-|
T Consensus 159 ~~~l~~~i~~~~~~~~~vlvVtHggvir~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 229 (247)
T PRK14115 159 LPYWNETIAPQLKSGKRVLIAAHGNSLRALVKYLDNISDEEILELNIPTGVPLVYELDENLKPIKHYYLGD 229 (247)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeChHHHHHHHHHHhCCCHHHhheeecCCCceEEEEECCCCcEeeeEecCC
Confidence 999988632 3578999999999999999999999998899999999999999998888888887643
No 14
>PRK03482 phosphoglycerate mutase; Provisional
Probab=99.98 E-value=3.1e-31 Score=271.52 Aligned_cols=187 Identities=23% Similarity=0.236 Sum_probs=160.4
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCcee
Q 004453 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQ 633 (753)
Q Consensus 559 ~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g~~v~~ 633 (753)
|++||||||||+++|..+++.| |.|||+.|++||+.++++|. ..+++.|||||+.||+|||+++ ++.++.+
T Consensus 1 m~~i~lvRHG~t~~n~~~~~~g~~d~~Lt~~G~~qA~~~~~~l~----~~~~~~I~sSpl~Ra~qTA~~i~~~~~~~~~~ 76 (215)
T PRK03482 1 MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVAERAK----ELGITHIISSDLGRTRRTAEIIAQACGCDIIF 76 (215)
T ss_pred CcEEEEEeCCCcccccccccCCCCCCCcCHHHHHHHHHHHHHHh----cCCCCEEEECCcHHHHHHHHHHHHhcCCCeeE
Confidence 4789999999999999888877 99999999999999998886 4478999999999999999998 5678889
Q ss_pred eccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEecHHHHHH
Q 004453 634 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRA 711 (753)
Q Consensus 634 ~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e--~~~VLIVSHg~vIr~ 711 (753)
.+.|+|+++|.|+|++++++...++.....+...+..+++|+|||+.++.+|+..++.++... +++|||||||++|++
T Consensus 77 ~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~Rv~~~l~~~~~~~~~~~vliVsHg~~i~~ 156 (215)
T PRK03482 77 DPRLRELNMGVLEKRHIDSLTEEEEGWRRQLVNGTVDGRIPEGESMQELSDRMHAALESCLELPQGSRPLLVSHGIALGC 156 (215)
T ss_pred ChhccccCCccccCCcHHHHHhhHHHHHHhhhcCCCccCCCCCccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHH
Confidence 999999999999999999987655433333334456678899999999999999999998643 467999999999999
Q ss_pred HHHHHhCCCCCCCCccccCCcEEEEEEECC-----CceEEEEE
Q 004453 712 LYAYFADRPLKEIPHIETPLHTIIEIQMGV-----TGVQEKRY 749 (753)
Q Consensus 712 Lla~llg~~~~~~~~l~~p~~sI~~L~~~~-----~g~~~~r~ 749 (753)
+++++++.+.+....+.+++|++++|++.. .++....+
T Consensus 157 l~~~l~~~~~~~~~~~~~~n~sis~~~~~~~~~~~~~~~~~~~ 199 (215)
T PRK03482 157 LVSTILGLPAWAERRLRLRNCSISRVDYQESPWLASGWVVETA 199 (215)
T ss_pred HHHHHhCCChhhhhccCCCCcEEEEEEEeCCccccceEEEEee
Confidence 999999999988888899999999998754 35555443
No 15
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=99.97 E-value=3.1e-31 Score=269.50 Aligned_cols=183 Identities=33% Similarity=0.452 Sum_probs=170.7
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCcee
Q 004453 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQ 633 (753)
Q Consensus 559 ~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g~~v~~ 633 (753)
+++||||||||+.+|..++++| |+|||+.|++||+.+++.|... ...++.||+||+.||+|||+++ ++.++..
T Consensus 2 ~~~i~lvRHGqt~~n~~~~~~G~~d~pLt~~G~~QA~~l~~~l~~~--~~~~~~i~sS~l~Ra~~TA~~~a~~~~~~~~~ 79 (208)
T COG0406 2 MMRLYLVRHGETEWNVEGRLQGWTDSPLTEEGRAQAEALAERLAAR--DIGFDAIYSSPLKRAQQTAEPLAEELGLPLEV 79 (208)
T ss_pred ceEEEEEecCCccccccccccCCCCCCCCHHHHHHHHHHHHHHhhc--CCCCCEEEECchHHHHHHHHHHHHhcCCCcee
Confidence 5899999999999999999988 9999999999999999988754 5689999999999999999999 5667889
Q ss_pred eccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCC--cEEEEecHHHHHH
Q 004453 634 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRA--PVVVISHQAVLRA 711 (753)
Q Consensus 634 ~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e~~--~VLIVSHg~vIr~ 711 (753)
.+.|+|+++|.|+|++.+++.+.+|.++..|..+++.+.+|+|||+.++.+|+.+++.++.+... +|||||||++|++
T Consensus 80 ~~~l~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~~~~~~~~~~vlvVsHg~~ir~ 159 (208)
T COG0406 80 DDRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLAPPPGGESLADVSKRVVAALAELLRSPPGNNVLVVSHGGVIRA 159 (208)
T ss_pred cCCeeEeecccccCCcHHHHHHhCHHHHHHHhcCccccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987633 6999999999999
Q ss_pred HHHHHhCCCCCCCCccccCCcEEEEEEECCCc
Q 004453 712 LYAYFADRPLKEIPHIETPLHTIIEIQMGVTG 743 (753)
Q Consensus 712 Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g 743 (753)
|++++++.+......+.+++++++.+.....+
T Consensus 160 l~~~~~~~~~~~~~~~~~~~~si~~l~~~~~~ 191 (208)
T COG0406 160 LLAYLLGLDLEELWRLRLDNASVTVLEFDDGR 191 (208)
T ss_pred HHHHhcCCChhhHHhcCCCCceEEEEEeeCCC
Confidence 99999999887778899999999999998776
No 16
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=99.97 E-value=3e-31 Score=278.03 Aligned_cols=184 Identities=24% Similarity=0.293 Sum_probs=160.2
Q ss_pred CCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc------C
Q 004453 557 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------G 628 (753)
Q Consensus 557 ~~~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~------g 628 (753)
|.|++||||||||+.+|..++++| |.|||+.|++||+.+++.|... ...++.|||||+.||+|||+++. .
T Consensus 2 ~~m~~i~LVRHGqt~~n~~~~~~G~~D~pLTe~G~~QA~~~a~~l~~~--~~~~~~IysSpl~Ra~qTA~~i~~~~~~~~ 79 (249)
T PRK14120 2 MMTYTLVLLRHGESEWNAKNLFTGWVDVDLTEKGEAEAKRGGELLAEA--GVLPDVVYTSLLRRAIRTANLALDAADRLW 79 (249)
T ss_pred CCCcEEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEecChHHHHHHHHHHHHhcccCC
Confidence 456889999999999999999988 9999999999999999988643 34689999999999999999982 3
Q ss_pred CCceeeccccccccCcCCCCCHHHHHHhChHH-HHHHhcCcCCC----------------------CCCCCCCHHHHHHH
Q 004453 629 FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKLRY----------------------RYPRGESYLDVIQR 685 (753)
Q Consensus 629 ~~v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~-~~~~~~d~~~~----------------------r~P~GES~~dv~~R 685 (753)
.++..++.|+|+++|.|+|++.++++++||+. +..|..+.... .+|+|||+.++.+|
T Consensus 80 ~~i~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~GES~~~~~~R 159 (249)
T PRK14120 80 IPVRRSWRLNERHYGALQGKDKAETKAEYGEEQFMLWRRSYDTPPPPIEDGSEYSQDNDPRYADLGVGPRTECLKDVVAR 159 (249)
T ss_pred CCeEECCCcccccccccCCCCHHHHHHHccHHHHHHHHhccccCCCccccccccccccCccccccCCCCCCCCHHHHHHH
Confidence 57888899999999999999999999999974 77776543221 24899999999999
Q ss_pred HHHHHHHH--H--cCCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCC
Q 004453 686 LEPVIIEL--E--RQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVT 742 (753)
Q Consensus 686 l~~~I~eL--~--~e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~ 742 (753)
+..+|.++ . ..+++|||||||++|+++++++++.+.+....+.+++++++.|..+..
T Consensus 160 v~~~l~~~~~~~~~~~~~iliVsHggvir~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 220 (249)
T PRK14120 160 FLPYWEDDIVPDLKAGKTVLIAAHGNSLRALVKHLDGISDEDIAGLNIPTGIPLVYELDED 220 (249)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEeCHHHHHHHHHHHhCCCHHHhheeccCCCceEEEEECCC
Confidence 99999874 2 245789999999999999999999999999999999999999998653
No 17
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=99.97 E-value=1.8e-31 Score=264.18 Aligned_cols=170 Identities=29% Similarity=0.410 Sum_probs=156.5
Q ss_pred EEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCceeecc
Q 004453 562 ILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWRA 636 (753)
Q Consensus 562 IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g~~v~~~~~ 636 (753)
||||||||+.+|..+++ | |.|||+.|++||+.+++.|. ..+++.|||||+.||+|||+++ ++.++.+.+.
T Consensus 1 i~lvRHg~t~~n~~~~~-g~~d~~Lt~~G~~qa~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~ 75 (177)
T TIGR03162 1 LYLIRHGETDVNAGLCY-GQTDVPLAEKGAEQAAALREKLA----DVPFDAVYSSPLSRCRELAEILAERRGLPIIKDPR 75 (177)
T ss_pred CEEEeCCCCccCCCcee-CCCCCCcChhHHHHHHHHHHHhc----CCCCCEEEECchHHHHHHHHHHHhhcCCCceECCc
Confidence 69999999999998887 5 99999999999999998875 5689999999999999999999 4678999999
Q ss_pred ccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEecHHHHHHHHH
Q 004453 637 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRALYA 714 (753)
Q Consensus 637 L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e--~~~VLIVSHg~vIr~Lla 714 (753)
|+|+++|.|+|++.+++.+.+| .+..|..++..+.+|+|||+.++.+|+..++.++.++ +++|||||||++|+++++
T Consensus 76 L~E~~~G~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~l~~~~~~~~vlvVsHg~~i~~l~~ 154 (177)
T TIGR03162 76 LREMDFGDWEGRSWDEIPEAYP-ELDAWAADWQHARPPGGESFADFYQRVSEFLEELLKAHEGDNVLIVTHGGVIRALLA 154 (177)
T ss_pred cccccCCccCCCCHHHHHHhCH-HHHHHHhCcccCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHH
Confidence 9999999999999999999998 6778888888889999999999999999999999764 578999999999999999
Q ss_pred HHhCCCCCCCCccccCCcEEEEE
Q 004453 715 YFADRPLKEIPHIETPLHTIIEI 737 (753)
Q Consensus 715 ~llg~~~~~~~~l~~p~~sI~~L 737 (753)
++++.+.+.++.+.++++++++|
T Consensus 155 ~~~~~~~~~~~~~~~~n~~i~~l 177 (177)
T TIGR03162 155 HLLGLPLEQWWSFDVEYGSITLI 177 (177)
T ss_pred HHhCCCHHHHhccccCCeeEEeC
Confidence 99999998888899999999864
No 18
>PRK13462 acid phosphatase; Provisional
Probab=99.97 E-value=5.1e-31 Score=268.43 Aligned_cols=184 Identities=23% Similarity=0.253 Sum_probs=158.8
Q ss_pred CCCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCC--EEEEcCcHHHHHHHHHhcCCCc
Q 004453 556 HLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAA--SIWTSTLQRTILTASPIAGFPK 631 (753)
Q Consensus 556 ~~~~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~--~V~tSpl~RaiqTA~~i~g~~v 631 (753)
...+++||||||||+++|..++++| |.|||+.|++||+.+++.|.. .+++ .|||||+.||+|||+.+ +.+.
T Consensus 2 ~~~~~~i~LvRHG~t~~n~~~~~~G~~d~pLt~~G~~QA~~l~~~l~~----~~~~~~~i~sSpl~Ra~qTA~~i-~~~~ 76 (203)
T PRK13462 2 GVRNHRLLLLRHGETEWSKSGRHTGRTELELTETGRTQAELAGQALGE----LELDDPLVISSPRRRALDTAKLA-GLTV 76 (203)
T ss_pred CccccEEEEEeCCCCCcccCCCccCCCCCCCCHHHHHHHHHHHHHHHh----CCCCCCEEEECchHHHHHHHHHh-cCcc
Confidence 3467899999999999999998888 899999999999999998864 3455 79999999999999988 5544
Q ss_pred -eeeccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEecHHH
Q 004453 632 -IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAV 708 (753)
Q Consensus 632 -~~~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e--~~~VLIVSHg~v 708 (753)
..++.|+|+++|.|+|++..++.+.+|+. ..|. ..+|+|||+.++.+|+..+++++... +++|||||||++
T Consensus 77 ~~~~~~LrE~~~G~~eG~~~~ei~~~~~~~-~~~~-----~~~p~gES~~~~~~Rv~~~l~~i~~~~~~~~vliVsHg~v 150 (203)
T PRK13462 77 DEVSGLLAEWDYGSYEGLTTPQIRESEPDW-LVWT-----HGCPGGESVAQVNERADRAVALALEHMESRDVVFVSHGHF 150 (203)
T ss_pred cccCccccccCCccccCCcHHHHHHhCchH-Hhhc-----CCCCCCccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCHH
Confidence 67899999999999999999999999873 3332 34589999999999999999998653 568999999999
Q ss_pred HHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCceEEEEEE
Q 004453 709 LRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYK 750 (753)
Q Consensus 709 Ir~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~~~r~~ 750 (753)
|+++++++++.+.+..+.+.+++++++.+++.........++
T Consensus 151 ir~ll~~~l~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~ 192 (203)
T PRK13462 151 SRAVITRWVELPLAEGSRFAMPTASIAICGFEHGVRQLSALG 192 (203)
T ss_pred HHHHHHHHhCCCHHHhhhcccCCceEEEEEeeCCceEEEeec
Confidence 999999999999888888999999999999876665555443
No 19
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=99.97 E-value=6.2e-31 Score=275.14 Aligned_cols=190 Identities=26% Similarity=0.297 Sum_probs=162.2
Q ss_pred ccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc---C---CCc
Q 004453 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA---G---FPK 631 (753)
Q Consensus 560 r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~---g---~~v 631 (753)
|+||||||||+.+|..++++| |.+||+.|++||+.++++|... ..+++.|||||++||+|||+++. + .++
T Consensus 1 ~~l~lVRHGqt~~n~~~~~~G~~D~~Lt~~G~~QA~~la~~L~~~--~~~~d~iysSpl~Ra~qTA~ii~~~~~~~~~~i 78 (245)
T TIGR01258 1 MKLVLVRHGESEWNALNLFTGWVDVKLSEKGQQEAKRAGELLKEE--GYEFDVAYTSLLKRAIHTLNIALDELDQLWIPV 78 (245)
T ss_pred CEEEEEeCCCcCccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEEcChHHHHHHHHHHHHhcCCCCCCe
Confidence 579999999999999999988 9999999999999999988643 35789999999999999999992 3 567
Q ss_pred eeeccccccccCcCCCCCHHHHHHhChHH-HHHHhcCcC------------------CC------CCCCCCCHHHHHHHH
Q 004453 632 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------RY------RYPRGESYLDVIQRL 686 (753)
Q Consensus 632 ~~~~~L~Ei~~G~~eglt~~ei~~~~P~~-~~~~~~d~~------------------~~------r~P~GES~~dv~~Rl 686 (753)
...+.|+|+++|.|+|++++++++.||+. +..|..+.. .| .+|+|||+.++.+|+
T Consensus 79 ~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~d~~y~~~~~~~~p~GES~~~~~~Rv 158 (245)
T TIGR01258 79 KKSWRLNERHYGALQGLNKAETAAKYGEEQVNIWRRSFDVPPPPIDESDPRSPHNDPRYAHLDPKVLPLTESLKDTIARV 158 (245)
T ss_pred eeCcccccccCCCCcCCCHHHHHHHhhHHHHHHHHhhccCCCCcCCcccccccccChhhhcCCcccCCCCCCHHHHHHHH
Confidence 77899999999999999999999999976 444543211 12 378999999999999
Q ss_pred HHHHHHHHc----CCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCceEEEEEEc
Q 004453 687 EPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYKL 751 (753)
Q Consensus 687 ~~~I~eL~~----e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~~~r~~l 751 (753)
..+|+++.. .+++|||||||++|+++++++++++...++.+.+++++++.++.+...-..+.|.+
T Consensus 159 ~~~l~~l~~~~~~~~~~vlvVsHg~vir~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (245)
T TIGR01258 159 LPYWNDEIAPDLLSGKRVLIVAHGNSLRALVKHLEGISDEEILELNIPTGIPLVYELDENLKPIKHYYL 227 (245)
T ss_pred HHHHHHHHhhhhcCCCEEEEEcChHHHHHHHHHHHCcCHHHHhheecCCCceEEEEECCCCCEeeeeec
Confidence 999998742 35689999999999999999999999998899999999999998766555555544
No 20
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.96 E-value=4.8e-29 Score=275.74 Aligned_cols=189 Identities=25% Similarity=0.312 Sum_probs=167.3
Q ss_pred CCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCce
Q 004453 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKI 632 (753)
Q Consensus 558 ~~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g~~v~ 632 (753)
.+++||||||||+.+|..+++.| |.+||+.|++||+.+++.|... .+++.|||||+.||+|||+++ ++.++.
T Consensus 170 ~~~~i~LvRHGet~~n~~~~~~g~~D~~Lt~~G~~QA~~l~~~l~~~---~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~ 246 (372)
T PRK07238 170 TPTRLLLLRHGQTELSVQRRYSGRGNPELTEVGRRQAAAAARYLAAR---GGIDAVVSSPLQRARDTAAAAAKALGLDVT 246 (372)
T ss_pred CceEEEEEeCCCCCcccCCeeeCCCCCCcCHHHHHHHHHHHHHHhcc---CCCCEEEECChHHHHHHHHHHHHhcCCCcE
Confidence 45899999999999999888877 9999999999999999888632 178999999999999999998 567888
Q ss_pred eeccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEecHHHHH
Q 004453 633 QWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLR 710 (753)
Q Consensus 633 ~~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e--~~~VLIVSHg~vIr 710 (753)
+.+.|+|+++|.|+|++++++.+.+|+.+..|..++ .+.+|+|||+.++.+|+..++.+|... +++|||||||++|+
T Consensus 247 ~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~w~~~~-~~~~p~gEs~~~~~~Rv~~~l~~l~~~~~~~~vlvVtHg~~ir 325 (372)
T PRK07238 247 VDDDLIETDFGAWEGLTFAEAAERDPELHRAWLADT-SVAPPGGESFDAVARRVRRARDRLIAEYPGATVLVVSHVTPIK 325 (372)
T ss_pred ECccceeCCCCccCCCCHHHHHHHCHHHHHHHHhCC-CCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEEChHHHH
Confidence 999999999999999999999999999999998876 678899999999999999999998654 46899999999999
Q ss_pred HHHHHHhCCCCCCCCccccCCcEEEEEEECCCc-eEEEEEE
Q 004453 711 ALYAYFADRPLKEIPHIETPLHTIIEIQMGVTG-VQEKRYK 750 (753)
Q Consensus 711 ~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g-~~~~r~~ 750 (753)
++++++++.+.+.+..+.+++++++.+.+...| +....++
T Consensus 326 ~ll~~~l~~~~~~~~~~~~~~~~~s~l~~~~~~~~~~~~~n 366 (372)
T PRK07238 326 TLLRLALDAGPGVLYRLHLDLASLSIAEFYPDGPASVRLVN 366 (372)
T ss_pred HHHHHHhCCCHHHhhhcccCCceEEEEEEECCCceEEEEec
Confidence 999999999998888889999999998875443 4444444
No 21
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=99.95 E-value=2.5e-27 Score=227.63 Aligned_cols=150 Identities=38% Similarity=0.577 Sum_probs=136.2
Q ss_pred cEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCceeec
Q 004453 561 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWR 635 (753)
Q Consensus 561 ~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g~~v~~~~ 635 (753)
+|||||||++.+|..+++++ |+|||+.|+.||+.+++.|.+. ..+++.|||||+.||+|||+.+ ++.++..++
T Consensus 1 ~i~liRHg~~~~n~~~~~~~~~d~~Lt~~G~~qA~~~~~~l~~~--~~~~~~i~~Sp~~R~~qTA~~~~~~~~~~~~~~~ 78 (158)
T PF00300_consen 1 RIYLIRHGESEFNAEGRVQGDSDPPLTERGREQARQLGEYLAER--DIQIDVIYSSPLRRCIQTAEIIAEGLGIEIIVDP 78 (158)
T ss_dssp EEEEEE-S-BHHHHTTBCGTTSSTGBEHHHHHHHHHHHHHHHHT--TSSCSEEEEESSHHHHHHHHHHHHHHTSEEEEEG
T ss_pred CEEEEECCccccccCCCcCCCCCccccHHHHHHHHhhccccccc--ccCceEEecCCcchhhhhhchhhccccccccccc
Confidence 59999999999998888777 6689999999999999998764 6789999999999999999999 468899999
Q ss_pred cccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHH---cCCCcEEEEecHHHHHHH
Q 004453 636 ALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELE---RQRAPVVVISHQAVLRAL 712 (753)
Q Consensus 636 ~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~---~e~~~VLIVSHg~vIr~L 712 (753)
.|+|+++|.|+|++..++.+.+|..+..|..+++.+++|+|||+.++..|+..++.++. ..+++|||||||++|++|
T Consensus 79 ~l~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~~~~l~~~~~~~~~vliVsHg~~i~~~ 158 (158)
T PF00300_consen 79 RLREIDFGDWEGRPFDEIEEKFPDEFEAWWSDPYFYRPPGGESWEDFQQRVKQFLDELIAYKRPGENVLIVSHGGFIRAL 158 (158)
T ss_dssp GGSCCGCGGGTTSBHHHHHHHHHHHHHHHHHHTSSCGSTTSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE-HHHHHHH
T ss_pred ccccccchhhcccchhhHHhhhhcccchhhccccccccccCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999998 357899999999999986
No 22
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=99.94 E-value=5.5e-26 Score=236.64 Aligned_cols=176 Identities=24% Similarity=0.300 Sum_probs=147.6
Q ss_pred cccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc---C---CCceeeccccccccC
Q 004453 572 DNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA---G---FPKIQWRALDEINAG 643 (753)
Q Consensus 572 ~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~---g---~~v~~~~~L~Ei~~G 643 (753)
+|..++++| |.|||+.|++||+.+++.|... +.+++.|||||+.||+|||+++. + .++...+.|+|+++|
T Consensus 1 ~N~~~~~qG~~D~pLTe~G~~QA~~l~~~L~~~--~~~~d~iysSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~L~E~~~G 78 (236)
T PTZ00123 1 WNKENRFTGWTDVPLSEKGVQEAREAGKLLKEK--GFRFDVVYTSVLKRAIKTAWIVLEELGQLHVPVIKSWRLNERHYG 78 (236)
T ss_pred CcccCceeCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCCCCCCceeCchhhhcccc
Confidence 466777888 9999999999999999988753 46799999999999999999992 2 467789999999999
Q ss_pred cCCCCCHHHHHHhChHHHHHHhcCcCC-------------------------CCCCCCCCHHHHHHHHHHHHHHHH----
Q 004453 644 VCDGMTYEEIKKNMPEEYEARKKDKLR-------------------------YRYPRGESYLDVIQRLEPVIIELE---- 694 (753)
Q Consensus 644 ~~eglt~~ei~~~~P~~~~~~~~d~~~-------------------------~r~P~GES~~dv~~Rl~~~I~eL~---- 694 (753)
.|+|++++++++.+|+.+..++.+++. +++|+|||+.++.+|+.++|.++.
T Consensus 79 ~~EG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gES~~~~~~Rv~~~l~~li~~~~ 158 (236)
T PTZ00123 79 ALQGLNKSETAEKHGEEQVKIWRRSYDIPPPPLEKSDERYPGNDPVYKDIPKDALPNTECLKDTVERVLPYWEDHIAPDI 158 (236)
T ss_pred cccCCCHHHHHHHccHHHHHHHhcccCCCCCCcccccccccccchhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999875544443221 345899999999999999998863
Q ss_pred cCCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCceEEEEE
Q 004453 695 RQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRY 749 (753)
Q Consensus 695 ~e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~~~r~ 749 (753)
..+++|||||||++|+++++++++.+.+.+..+.+++++++.|+....--..+.|
T Consensus 159 ~~~~~vliVsHG~vir~ll~~l~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 213 (236)
T PTZ00123 159 LAGKKVLVAAHGNSLRALVKYLDKMSEEDILELNIPTGVPLVYELDENLKPIKKY 213 (236)
T ss_pred hCCCeEEEEeCHHHHHHHHHHHhCCCHHHHhhccCCCCceEEEEECCCCCEeeee
Confidence 2357899999999999999999999999888999999999999986553333333
No 23
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=99.94 E-value=2.2e-26 Score=223.27 Aligned_cols=146 Identities=33% Similarity=0.417 Sum_probs=125.9
Q ss_pred cEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCceeec
Q 004453 561 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWR 635 (753)
Q Consensus 561 ~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g~~v~~~~ 635 (753)
+|||||||++.+|..+.+.| |.|||+.|++||+.++++|...+ ..+++.|||||+.||+|||+++ ++.+ ...+
T Consensus 1 ~i~lvRHG~s~~n~~~~~~g~~d~~Lt~~G~~qa~~~a~~l~~~~-~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~-~~~~ 78 (155)
T smart00855 1 RLYLIRHGETEANREGRLTGWTDSPLTELGRAQAEALGELLASLG-RLRFDVIYSSPLLRARETAEALAIALGLG-EVDP 78 (155)
T ss_pred CEEEEeCCCCcccccCeEcCCCCCCCCHHHHHHHHHHHHHHHhcc-CCCCCEEEeCchHHHHHHHHHHHHhcCCC-CCCh
Confidence 58999999999998776664 99999999999999999886431 3588999999999999999999 3333 4889
Q ss_pred cccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC----CCcEEEEecHHHHHH
Q 004453 636 ALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ----RAPVVVISHQAVLRA 711 (753)
Q Consensus 636 ~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e----~~~VLIVSHg~vIr~ 711 (753)
.|+|+++|.|+|++++++.+.+|+.+. +++.+.+|+|||+.++..|+.+++.++.++ .++|||||||++|++
T Consensus 79 ~L~E~~~G~~~g~~~~~~~~~~~~~~~----~~~~~~~~~gEs~~~~~~Rv~~~~~~i~~~~~~~~~~vlvVtHg~~ir~ 154 (155)
T smart00855 79 RLRERDYGAWEGLTKEEERAKAWTRPA----DWLGAAPPGGESLADVVERLVRALEELIATHDKSGQNVLIVSHGGVIRA 154 (155)
T ss_pred hhhhcccceecCCcHHHHHHHHHHHHh----ccCCCCCcCCCCHHHHHHHHHHHHHHHHHhcccCCCeEEEEECCccccc
Confidence 999999999999999999888777554 346788999999999999999999999653 568999999999987
Q ss_pred H
Q 004453 712 L 712 (753)
Q Consensus 712 L 712 (753)
+
T Consensus 155 ~ 155 (155)
T smart00855 155 L 155 (155)
T ss_pred C
Confidence 4
No 24
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=5.3e-26 Score=230.66 Aligned_cols=183 Identities=27% Similarity=0.311 Sum_probs=161.7
Q ss_pred CCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---
Q 004453 557 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG--- 628 (753)
Q Consensus 557 ~~~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g--- 628 (753)
+...+++||||||++||.+++++| |.+||+.|++||++++++|... +..++.+|||++.||.|||+.+ .+
T Consensus 3 ~~~~~lvlvRHGes~wN~e~~~~G~~D~~Lte~G~~qA~~~~~~l~~~--~~~~~~~~tS~l~RakqT~~~il~~~~~~~ 80 (214)
T KOG0235|consen 3 SNTFRLVLVRHGESEWNKENIFQGWIDAPLTEKGEEQAKAAAQRLKDL--NIEFDVCYTSDLKRAKQTAELILEELKQKK 80 (214)
T ss_pred CcceEEEEEecCchhhhhhCcccccccCccChhhHHHHHHHHHHHHhc--CCcccEEecCHHHHHHHHHHHHHHhhccCC
Confidence 455789999999999999999999 9999999999999999999876 6788999999999999999999 23
Q ss_pred CCceeeccccccccCcCCCCCHHHHHHhChHH--HHHHhcCc-CCCCCCCCCCHHHHHHHHHHHHHHHHc----CCCcEE
Q 004453 629 FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE--YEARKKDK-LRYRYPRGESYLDVIQRLEPVIIELER----QRAPVV 701 (753)
Q Consensus 629 ~~v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~--~~~~~~d~-~~~r~P~GES~~dv~~Rl~~~I~eL~~----e~~~VL 701 (753)
.++.....|+|.++|.++|+...|+.+.++++ +..+.... ....+|.|||+.++..|+.+++++... ++.+||
T Consensus 81 ~pv~~~~~L~ER~yG~l~Gl~~~e~~~~~g~~~~~~~~r~~~~~~~~~p~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vl 160 (214)
T KOG0235|consen 81 VPVLYTWRLNERHYGDLQGLNKRETAKRYGEEQVYEDPRLSDLDEIPLPDGESLKDCLDRLLPFWNEEIAKESKEGKNVL 160 (214)
T ss_pred cceEechhhchhhhccccCccHHHHHHHcchhccccchhhccCCcCCCCCCccHHHHHHHHHHHHHHhhhhhhcCCcEEE
Confidence 78999999999999999999999999999987 45555443 445578999999999999999998643 478899
Q ss_pred EEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECC
Q 004453 702 VISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGV 741 (753)
Q Consensus 702 IVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~ 741 (753)
|++||..+|+++.++.|+..+.+-.+.++.+-.+.++.+.
T Consensus 161 i~aHGnsLR~i~~~l~g~s~~~i~~~~~~t~vp~v~~ld~ 200 (214)
T KOG0235|consen 161 IVAHGNSLRAIVKHLEGISDEAIKELNLPTGVPIVYELDK 200 (214)
T ss_pred EEcCcHHHHHHHHHHhcCCHhhhhheecccCCceEEEccc
Confidence 9999999999999999999999999999998877777554
No 25
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.5e-25 Score=223.48 Aligned_cols=185 Identities=23% Similarity=0.256 Sum_probs=165.9
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh------cCCC
Q 004453 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI------AGFP 630 (753)
Q Consensus 559 ~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i------~g~~ 630 (753)
+++++|+|||||+||..+.+.| |.+||++|.++|...|+.|++. +..|+.+|||-+.||++|+.++ ..++
T Consensus 1 ~~~Lvl~RHGqSeWN~~NlFtGW~Dv~LtekG~~EA~~ag~llk~~--~~~~dia~TS~L~RAi~T~~i~L~e~d~~~ip 78 (230)
T COG0588 1 MMKLVLLRHGQSEWNKENLFTGWVDVDLTEKGISEAKAAGKLLKEE--GLEFDIAYTSVLKRAIKTLNIVLEESDQLWIP 78 (230)
T ss_pred CceEEEEecCchhhhhcCceeeeeecCcchhhHHHHHHHHHHHHHc--CCCcceeehHHHHHHHHHHHHHhhhhcccCcc
Confidence 4789999999999999999999 9999999999999999999876 7899999999999999999998 3578
Q ss_pred ceeeccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCC-------------------------CCCCHHHHHHH
Q 004453 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYP-------------------------RGESYLDVIQR 685 (753)
Q Consensus 631 v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P-------------------------~GES~~dv~~R 685 (753)
+.....|+|.++|.++|++..+.+++|.++.-..+...|...+| .+||+.++.+|
T Consensus 79 v~kswrLNERhYG~LqGlnK~~t~~kyGeeqv~~wRRsydi~PP~~~~~~~~~~~~d~ry~~~~~~~~p~~EsLkdt~~R 158 (230)
T COG0588 79 VIKSWRLNERHYGALQGLNKAETAAKYGEEQVLIWRRSYDIPPPKLEKDDERSPHRDRRYAHLDIGGLPLTESLKDTVER 158 (230)
T ss_pred hhhHHHhhhhhhhhhhcCChHHHHHHHhHHHHHHHHHhcCCCCCCcccccccccccccccccccccCCCccchHHHHHHH
Confidence 88888999999999999999999999998776666655666655 34999999999
Q ss_pred HHHHHHHHH----cCCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCceE
Q 004453 686 LEPVIIELE----RQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQ 745 (753)
Q Consensus 686 l~~~I~eL~----~e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~ 745 (753)
+.|++.+.. .++++|||++||..||+|+.|+.+++-+++..+++|++--++++.+.....
T Consensus 159 v~Pyw~~~I~p~l~~Gk~VlI~AHGNSlRaLiK~L~~iSd~dI~~l~IPtg~Plvyeld~~l~~ 222 (230)
T COG0588 159 VLPYWEDDIAPNLKSGKNVLIVAHGNSLRALIKYLEGISDEDILDLNIPTGIPLVYELDKNLKV 222 (230)
T ss_pred hhHHHHHHhhHHHhCCCeEEEEecchhHHHHHHHHhCCCHHHhhhcccCCCCcEEEEECCCCcC
Confidence 999998853 458999999999999999999999999999999999999888888766533
No 26
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=99.84 E-value=1.7e-20 Score=201.74 Aligned_cols=167 Identities=20% Similarity=0.265 Sum_probs=126.1
Q ss_pred ccEEEecccccccccCCCcCCCCC---CCHHHHHHHHHHHHHHHHHhc----CCCCCEEEEcCcHHHHHHHHHhc----C
Q 004453 560 RPILLTRHGESRDNVRGRIGGDTI---LSDAGEIYAKKLANFVEKRLK----SERAASIWTSTLQRTILTASPIA----G 628 (753)
Q Consensus 560 r~IyLVRHGEs~~N~~~~~~GD~p---LTe~G~~QA~~La~~L~~~l~----~~~~~~V~tSpl~RaiqTA~~i~----g 628 (753)
++||||||||+..+ + ..|.+ ||+.|++||++++++|..... +.+++.|||||+.||+|||++|. +
T Consensus 103 ~~L~LVRHGq~~~~--~--~~d~~~~~LTe~G~~QA~~lg~~L~~~~~~~~~~~~~d~IysSPL~RA~qTAeiIa~~~~~ 178 (299)
T PTZ00122 103 RQIILVRHGQYINE--S--SNDDNIKRLTELGKEQARITGKYLKEQFGEILVDKKVKAIYHSDMTRAKETAEIISEAFPG 178 (299)
T ss_pred eEEEEEECCCCCCC--C--CCCcccCCCCHHHHHHHHHHHHHHHHhhccccccCCCCEEEEcCcHHHHHHHHHHHHhCCC
Confidence 89999999996543 2 22544 999999999999998875321 12789999999999999999982 4
Q ss_pred CCceeeccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC-----CCcEEEE
Q 004453 629 FPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ-----RAPVVVI 703 (753)
Q Consensus 629 ~~v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e-----~~~VLIV 703 (753)
.++..++.|+|. ++..+. | ....+.++++|+ .+..+|+..++.++... ++.+|||
T Consensus 179 ~~v~~d~~LrEG-------~~~~~~----~--------~~~~~~~~gee~-~~~~~Rv~~al~~i~~r~~~~~~~~vLVV 238 (299)
T PTZ00122 179 VRLIEDPNLAEG-------VPCAPD----P--------PSRGFKPTIEEI-LEDMKRIEAAFEKYFHRPVEDEDSVEIIV 238 (299)
T ss_pred CCceeCcccccC-------CccccC----c--------cccccCCCcchH-HHHHHHHHHHHHHHHHhcccCCCCeEEEE
Confidence 678888899882 222111 1 011234455666 66699999999998532 2458999
Q ss_pred ecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECC-CceEEEEEE
Q 004453 704 SHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGV-TGVQEKRYK 750 (753)
Q Consensus 704 SHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~-~g~~~~r~~ 750 (753)
|||++|+++++++++.+.+.+..+.+++++++.|+... ..+....++
T Consensus 239 sHGgvIR~ll~~lLglp~~~~~~~~~~N~sit~l~~~~~g~~~l~~~n 286 (299)
T PTZ00122 239 CHGNVIRYLVCRALQLPPEAWLRLSLYNCGITWIVISSEGHVSLSGFG 286 (299)
T ss_pred eCChHHHHHHHHHhCcCHHHHhhccCCCceEEEEEEeCCCcEEEEEEe
Confidence 99999999999999999888888889999999999864 345555444
No 27
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=99.84 E-value=1.4e-20 Score=181.48 Aligned_cols=135 Identities=33% Similarity=0.450 Sum_probs=116.1
Q ss_pred cEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc----CCCceee
Q 004453 561 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA----GFPKIQW 634 (753)
Q Consensus 561 ~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~----g~~v~~~ 634 (753)
+|||+|||++.++......+ |.|||+.|++||+.++++|... ..+++.|||||+.||+|||+++. +.++...
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~--~~~~~~i~~Sp~~Ra~qTa~~l~~~~~~~~~~~~ 78 (153)
T cd07067 1 RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKEL--GIKFDRIYSSPLKRAIQTAEIILEELPGLPVEVD 78 (153)
T ss_pred CEEEEECCCCcccccCcccCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECcHHHHHHHHHHHHHhcCCCCceeC
Confidence 58999999999987664444 8999999999999999998754 34789999999999999999992 4566667
Q ss_pred ccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEecHHHHHHH
Q 004453 635 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRAL 712 (753)
Q Consensus 635 ~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e--~~~VLIVSHg~vIr~L 712 (753)
+.|+| +|+..++.++.+. +++|+||||+++|+.+
T Consensus 79 ~~L~e--------------------------------------------~R~~~~~~~l~~~~~~~~iliV~H~~~i~~~ 114 (153)
T cd07067 79 PRLRE--------------------------------------------ARVLPALEELIAPHDGKNVLIVSHGGVLRAL 114 (153)
T ss_pred ccchH--------------------------------------------HHHHHHHHHHHHhCCCCeEEEEeChHHHHHH
Confidence 77766 7899999998764 6799999999999999
Q ss_pred HHHHhCCCCCCCCccccCCcEEEEEEECC
Q 004453 713 YAYFADRPLKEIPHIETPLHTIIEIQMGV 741 (753)
Q Consensus 713 la~llg~~~~~~~~l~~p~~sI~~L~~~~ 741 (753)
++++++.+....+.+.++++++++++...
T Consensus 115 ~~~l~~~~~~~~~~~~~~~~s~~~~~~~~ 143 (153)
T cd07067 115 LAYLLGLSDEDILRLNLPNGSISVLELDE 143 (153)
T ss_pred HHHHhCCCHHHHHhcCCCCceEEEEEEeC
Confidence 99999988877777899999999999865
No 28
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=99.79 E-value=4.3e-19 Score=160.96 Aligned_cols=93 Identities=28% Similarity=0.504 Sum_probs=85.7
Q ss_pred EEEEEEecccCCCceEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEEecCCCCCceeeccCCCc
Q 004453 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPNR 112 (753)
Q Consensus 33 v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~g~NR 112 (753)
|+|+|.+|++.+++.++|+||++.||+||+++|++|+....+.|++++++|....+|||||++++.++ ..+.||.|+||
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi~~~~~-~~~~WE~g~nr 80 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYIIANKDS-GVVSWENGPNR 80 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEEEeCCC-CcEEEEcCCCe
Confidence 79999999999999999999999999999999999999999999999999988779999999997655 78899999999
Q ss_pred ccccCCCCCCceEE
Q 004453 113 LLTGGALQGDSRSA 126 (753)
Q Consensus 113 ~l~~~~~~~~~~~~ 126 (753)
.+..|.++.....+
T Consensus 81 ~~~~p~~~~~~~~~ 94 (99)
T cd05816 81 ELSAPSLKGESSTL 94 (99)
T ss_pred EEECCccCCCCceE
Confidence 99999987664443
No 29
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=99.76 E-value=1.2e-18 Score=156.83 Aligned_cols=90 Identities=26% Similarity=0.499 Sum_probs=74.6
Q ss_pred eEEEEEEEEecccCCCceEEEecCCCccCCCCccccccCccc----CCCceEEEEecCCCCCceeEEEEEecCCCCCcee
Q 004453 30 QFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE----SASMWELSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (753)
Q Consensus 30 ~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~----~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~ 105 (753)
|.-|+|+| +.++.+++.|+|+||+|+||+||++||++|... +++.|.++|.+|... +|||||++++.+. .+.
T Consensus 1 ~v~V~F~v-~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~-~~eYKy~i~~~~g--~~~ 76 (96)
T PF00686_consen 1 QVSVTFRV-NYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGT-PFEYKYVIKDADG--NVI 76 (96)
T ss_dssp EEEEEEEE-SE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTS-EEEEEEEEEETTS--EEE
T ss_pred CEEEEEEE-EeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCC-EEEEEEEEEeCCC--CEE
Confidence 56799999 569999999999999999999999999999975 679999999999954 8999999986554 779
Q ss_pred eccCCCcccccCCCCCCc
Q 004453 106 VEEGPNRLLTGGALQGDS 123 (753)
Q Consensus 106 wE~g~NR~l~~~~~~~~~ 123 (753)
||+|+||.+..|.....+
T Consensus 77 WE~g~nR~~~~~~~~~~~ 94 (96)
T PF00686_consen 77 WESGENRVLTVPSSGSST 94 (96)
T ss_dssp E-SSSEEEEE--SSSEEE
T ss_pred ECCCCCEEEECCCCCcee
Confidence 999999999998876544
No 30
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=99.76 E-value=9.4e-18 Score=160.54 Aligned_cols=132 Identities=29% Similarity=0.412 Sum_probs=108.3
Q ss_pred cEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcC-----CCcee
Q 004453 561 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAG-----FPKIQ 633 (753)
Q Consensus 561 ~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~g-----~~v~~ 633 (753)
+|||+|||++.++..+.+++ |.|||++|++||+.+++.|.+. ...++.|||||+.||+|||+++.. .++..
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~l~~~l~~~--~~~~~~v~sSp~~R~~~Ta~~~~~~~~~~~~~~~ 78 (153)
T cd07040 1 VLYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRER--YIKFDRIYSSPLKRAIQTAEIILEGLFEGLPVEV 78 (153)
T ss_pred CEEEEeCCCCccccCCCccCCCCCCcCHHHHHHHHHHHHHHHHh--CCCCCEEEECChHHHHHHHHHHHHHhcCCCCeEE
Confidence 48999999999887765344 9999999999999999999765 247899999999999999999821 12211
Q ss_pred eccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC----CCcEEEEecHHHH
Q 004453 634 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ----RAPVVVISHQAVL 709 (753)
Q Consensus 634 ~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e----~~~VLIVSHg~vI 709 (753)
.+. .|+.+++.++.+. .++++||||+++|
T Consensus 79 ~~~-----------------------------------------------~r~~~~~~~~~~~~~~~~~~iliv~H~~~i 111 (153)
T cd07040 79 DPR-----------------------------------------------ARVLNALLELLARHLLDGKNVLIVSHGGTI 111 (153)
T ss_pred CHH-----------------------------------------------HHHHHHHHHHHHhhCCCCCEEEEEeCCHHH
Confidence 111 7888888887663 5789999999999
Q ss_pred HHHHHHHhCCCCCCCCccccCCcEEEEEEECC
Q 004453 710 RALYAYFADRPLKEIPHIETPLHTIIEIQMGV 741 (753)
Q Consensus 710 r~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~ 741 (753)
+.+++++++.+....+.+.++++++..++...
T Consensus 112 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (153)
T cd07040 112 RALLAALLGLSDEEILSLNLPNGSILVLELDE 143 (153)
T ss_pred HHHHHHHhCcCHHHhccccCCCCceEEEEEcC
Confidence 99999999988777777889999999998754
No 31
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=99.71 E-value=2.8e-17 Score=149.54 Aligned_cols=93 Identities=25% Similarity=0.292 Sum_probs=82.1
Q ss_pred ceEEEEEEEEecccCCCceEEEecCCCccCCCCccccccCc----ccCCCceEEEEecCCCCCceeEEEEEecCCCCCce
Q 004453 29 GQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMG----RESASMWELSFVVPPNHETLDFKFLLKPKYGNGPC 104 (753)
Q Consensus 29 ~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~----~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~ 104 (753)
+|.-|+|+|++|++..++.++|+||.|+||+|++++|+.|. ...++.|.+++++|... +|||||++++.+ ..+
T Consensus 1 ~~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~-~~eyK~~~~~~~--~~~ 77 (101)
T cd05807 1 DQVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGT-TIEFKFIKKNGD--NTV 77 (101)
T ss_pred CcEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCC-cEEEEEEEECCC--CCE
Confidence 47889999999999999999999999999999999999653 35789999999999998 899999999754 577
Q ss_pred eeccCCCcccccCCCCCCce
Q 004453 105 IVEEGPNRLLTGGALQGDSR 124 (753)
Q Consensus 105 ~wE~g~NR~l~~~~~~~~~~ 124 (753)
.||.|+||.++.|....++.
T Consensus 78 ~WE~g~nr~~~~p~~~~~~~ 97 (101)
T cd05807 78 TWESGSNHTYTAPSSTTGTI 97 (101)
T ss_pred EEEeCCCEEEeCCCCCceEE
Confidence 89999999999997655443
No 32
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=99.69 E-value=1e-16 Score=146.56 Aligned_cols=97 Identities=25% Similarity=0.339 Sum_probs=84.6
Q ss_pred eEEEEEEEEe-cccCCCceEEEecCCCccCCCCcc--ccc-cCcccCCCceEEEEecCCCCCceeEEEEEecCCCCCcee
Q 004453 30 QFYVSLKMVN-IKLKGDLIPHVYGSVPLVGSWDSS--KAL-AMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (753)
Q Consensus 30 ~~~v~lkv~a-P~l~~~~~l~l~Gs~~~LG~W~~~--kal-~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~ 105 (753)
|.-|+|.|.+ |++..++.++|+||.++||+||+. +|+ +|...+++.|.+++++|... +|||||++++.+ ..+.
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~-~veyK~v~~~~~--g~v~ 78 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGT-YIEFKFLKAPAD--GTGT 78 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCC-cEEEEEEEECCC--CCEE
Confidence 5678999976 799999999999999999999996 466 89999999999999999987 899999999655 5788
Q ss_pred eccCCCcccccCCCCCCceEEEEE
Q 004453 106 VEEGPNRLLTGGALQGDSRSALFR 129 (753)
Q Consensus 106 wE~g~NR~l~~~~~~~~~~~~~~~ 129 (753)
||+|+||.++.|....++..+.++
T Consensus 79 WE~g~Nr~~~~p~~~~~~~~~~w~ 102 (103)
T cd05820 79 WEGGSNHAYTTPSGGTGTVTVTWQ 102 (103)
T ss_pred EEeCCCEeEECCCCCcEEEEEEec
Confidence 999999999999877766655443
No 33
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=99.67 E-value=2.2e-15 Score=147.08 Aligned_cols=137 Identities=18% Similarity=0.205 Sum_probs=98.3
Q ss_pred ccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc---CCCceeecc
Q 004453 560 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA---GFPKIQWRA 636 (753)
Q Consensus 560 r~IyLVRHGEs~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~---g~~v~~~~~ 636 (753)
|+|||||||+++++.. -..|.+||+.|++||+.++++|... +..++.|||||+.||+|||+.+. +.+..
T Consensus 1 m~l~LvRHg~a~~~~~--~d~dr~Lt~~G~~qa~~~~~~l~~~--~~~~d~i~sSp~~Ra~qTa~~l~~~~~~~~~---- 72 (152)
T TIGR00249 1 MQLFIMRHGDAALDAA--SDSVRPLTTNGCDESRLVAQWLKGQ--GVEIERILVSPFVRAEQTAEIVGDCLNLPSS---- 72 (152)
T ss_pred CEEEEEeCCCcccccC--CCCCCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEECCcHHHHHHHHHHHHHcCCCcc----
Confidence 4799999999988764 2238899999999999999998754 45789999999999999999982 22110
Q ss_pred ccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHc-CCCcEEEEecHHHHHHHHHH
Q 004453 637 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER-QRAPVVVISHQAVLRALYAY 715 (753)
Q Consensus 637 L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~-e~~~VLIVSHg~vIr~Lla~ 715 (753)
...++++ +|+ ++..+ +..+|.++.. ..++|+||+|+..+..++.+
T Consensus 73 -----~~~~~~l------------------------~p~-~~~~~----~~~~l~~~~~~~~~~vliVgH~P~i~~l~~~ 118 (152)
T TIGR00249 73 -----AEVLEGL------------------------TPC-GDIGL----VSDYLEALTNEGVASVLLVSHLPLVGYLVAE 118 (152)
T ss_pred -----eEEccCc------------------------CCC-CCHHH----HHHHHHHHHhcCCCEEEEEeCCCCHHHHHHH
Confidence 0011111 132 33333 3334444433 35689999999999999999
Q ss_pred HhCCCCCCCCccccCCcEEEEEEECCC
Q 004453 716 FADRPLKEIPHIETPLHTIIEIQMGVT 742 (753)
Q Consensus 716 llg~~~~~~~~l~~p~~sI~~L~~~~~ 742 (753)
+++.+.. +.++.+++..|+.+..
T Consensus 119 l~~~~~~----~~~~~~~~~~l~~~~~ 141 (152)
T TIGR00249 119 LCPGENP----IMFTTGAIASLLWDES 141 (152)
T ss_pred HhCCCCC----CcCcceeEEEEEEecC
Confidence 9875321 4689999999998633
No 34
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.66 E-value=3.9e-16 Score=139.87 Aligned_cols=85 Identities=25% Similarity=0.436 Sum_probs=77.2
Q ss_pred EEEEEEEecccCCCceEEEecCCCccCCCCccccccCcccC-CCceEEEEecCC-CCCceeEEEEEecCCCCCceeeccC
Q 004453 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRES-ASMWELSFVVPP-NHETLDFKFLLKPKYGNGPCIVEEG 109 (753)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~-~~~W~~~l~~~~-~~~~leyKf~~~~~~~~~~~~wE~g 109 (753)
.|+|++++ ++..++.++|+||+++||+||+++|++|+..+ .+.|.+++++|. ...+|+|||++++.+ ..+.||.|
T Consensus 1 ~v~f~i~~-~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~~~~~--~~~~wE~~ 77 (96)
T cd05467 1 QVRFQVRC-TTQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVIVDDD--GNVQWESG 77 (96)
T ss_pred CEEEEEEE-ECCCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEEECCC--CCEEeccC
Confidence 48999999 88999999999999999999999999999998 999999999998 334899999999655 67889999
Q ss_pred CCcccccCCC
Q 004453 110 PNRLLTGGAL 119 (753)
Q Consensus 110 ~NR~l~~~~~ 119 (753)
+||.+..|..
T Consensus 78 ~~r~~~~~~~ 87 (96)
T cd05467 78 SNRVLTVPST 87 (96)
T ss_pred CCeEEEcCCC
Confidence 9999988754
No 35
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.65 E-value=3.6e-16 Score=141.44 Aligned_cols=87 Identities=22% Similarity=0.344 Sum_probs=79.6
Q ss_pred EEEEEEEecccCCCceEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEEecCCC-CCceeeccCC
Q 004453 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYG-NGPCIVEEGP 110 (753)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~-~~~~~wE~g~ 110 (753)
.|+|.+.+-+...++.++|+|+++.||+|++++|++|..++++.|.+++++|... +|||||++++.+. ...+.||.|+
T Consensus 2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~-~veyKyv~~~~~~~~~~v~WE~g~ 80 (97)
T cd05810 2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPAST-NVEWKCLKRNETNPTAGVQWQGGG 80 (97)
T ss_pred eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCC-eEEEEEEEEcCCCCcceEEEeeCC
Confidence 4788888889999999999999999999999999999999999999999999986 8999999997665 3568899999
Q ss_pred CcccccCCC
Q 004453 111 NRLLTGGAL 119 (753)
Q Consensus 111 NR~l~~~~~ 119 (753)
||.+..|.-
T Consensus 81 Nr~~~~p~~ 89 (97)
T cd05810 81 NNQLTTGNS 89 (97)
T ss_pred CEEEeCCCC
Confidence 999998876
No 36
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.65 E-value=1.2e-15 Score=149.51 Aligned_cols=117 Identities=23% Similarity=0.231 Sum_probs=100.3
Q ss_pred CCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 004453 347 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM 426 (753)
Q Consensus 347 ~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~ 426 (753)
.++++.+|||+||+||||||||.+|+++|...|+.+.+++.|++|. |++.+.+|..+++.+..++..++|+...+
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~---gL~~dLgFs~edR~eniRRvaevAkll~d-- 93 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH---GLNRDLGFSREDRIENIRRVAEVAKLLAD-- 93 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh---cccCCCCCChHHHHHHHHHHHHHHHHHHH--
Confidence 4678999999999999999999999999999999999999999964 78889999999999999999999999666
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHH
Q 004453 427 ISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDII 475 (753)
Q Consensus 427 ~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i 475 (753)
+|.+||+....+.++.|++.+++.+.+ .++-|.+.|+-+.+.
T Consensus 94 ------aG~iviva~ISP~r~~R~~aR~~~~~~-~FiEVyV~~pl~vce 135 (197)
T COG0529 94 ------AGLIVIVAFISPYREDRQMARELLGEG-EFIEVYVDTPLEVCE 135 (197)
T ss_pred ------CCeEEEEEeeCccHHHHHHHHHHhCcC-ceEEEEeCCCHHHHH
Confidence 999999999999999999999995443 333333345444443
No 37
>PRK06193 hypothetical protein; Provisional
Probab=99.64 E-value=2.5e-15 Score=153.14 Aligned_cols=129 Identities=15% Similarity=0.118 Sum_probs=98.5
Q ss_pred CCccEEEecccccccccCCCcCC-------CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcCCC
Q 004453 558 TPRPILLTRHGESRDNVRGRIGG-------DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFP 630 (753)
Q Consensus 558 ~~r~IyLVRHGEs~~N~~~~~~G-------D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~g~~ 630 (753)
....|||||||++++|..+.+.+ |.|||++|++||+.++++|.+. +..++.|||||+.||+|||+.+.+..
T Consensus 41 ~~~~L~LvRHGet~~n~~~~~~gd~d~~~~~rpLt~~G~~qA~~l~~~L~~~--~~~~d~V~sSpl~Ra~qTA~il~~~~ 118 (206)
T PRK06193 41 KGGYVIYFRHAATDRSQADQDTSDMDDCSTQRNLSEEGREQARAIGEAFRAL--AIPVGKVISSPYCRAWETAQLAFGRH 118 (206)
T ss_pred cCCEEEEEeCccCCCCccCCcccccccCcCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHhccc
Confidence 34789999999998887766555 3599999999999999998754 56789999999999999999884321
Q ss_pred ceeeccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecHHHHH
Q 004453 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLR 710 (753)
Q Consensus 631 v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e~~~VLIVSHg~vIr 710 (753)
.....++++ ....|.+|++..+.+|+..+|.++....++||||+|+..|+
T Consensus 119 -~~~~~l~~~-----------------------------~~~~~~~~~~~~y~~~l~~~I~~l~~~~~~vLlVgHnp~i~ 168 (206)
T PRK06193 119 -EKEIRLNFL-----------------------------NSEPVPAERNALLKAGLRPLLTTPPDPGTNTVLVGHDDNLE 168 (206)
T ss_pred -ccCcccccc-----------------------------cccCCChhhHHHHHHHHHHHHhhCCCCCCeEEEEeCchHHH
Confidence 000000000 01122457888888999999999987778999999999999
Q ss_pred HHHHHHhC
Q 004453 711 ALYAYFAD 718 (753)
Q Consensus 711 ~Lla~llg 718 (753)
.+++++.+
T Consensus 169 ~l~g~~~~ 176 (206)
T PRK06193 169 AATGIYPE 176 (206)
T ss_pred HHhCCCCc
Confidence 98885543
No 38
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.63 E-value=9.2e-16 Score=139.44 Aligned_cols=82 Identities=22% Similarity=0.434 Sum_probs=76.1
Q ss_pred EEEEEEecccCCCceEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEEecCCCCCceeeccCCCc
Q 004453 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPNR 112 (753)
Q Consensus 33 v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~g~NR 112 (753)
|+|+++++ +..++.|+|+||++.||+|++++|++|+..+.+.|++++++|.. .++||||++++.++...+.||.|+||
T Consensus 2 v~F~i~~~-t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~~-~~veYKY~i~~~~~~~~~~WE~g~nr 79 (100)
T cd05817 2 VTFKIHYP-TQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPES-VYIEYKYFVSNYDDPNTVLWESGPNR 79 (100)
T ss_pred EEEEEEEE-cCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECCC-CcEEEEEEEEecCCCCCeEecCCCCE
Confidence 78999998 88999999999999999999999999999999999999999994 57999999998776678999999999
Q ss_pred cccc
Q 004453 113 LLTG 116 (753)
Q Consensus 113 ~l~~ 116 (753)
.++.
T Consensus 80 ~~~~ 83 (100)
T cd05817 80 VLRT 83 (100)
T ss_pred EEEe
Confidence 9885
No 39
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=99.62 E-value=1.8e-15 Score=137.32 Aligned_cols=87 Identities=15% Similarity=0.220 Sum_probs=76.4
Q ss_pred eEEEEEEEEecccCCCceEEEecCCCccCCCCcccc-ccCc-ccCCCceEEEEecCCCCCceeEEEEEecCCCCCceeec
Q 004453 30 QFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKA-LAMG-RESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVE 107 (753)
Q Consensus 30 ~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~ka-l~M~-~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE 107 (753)
|.-|+|++++|++..++.++|+||.++||+|+++++ +.|. ...++.|.+++++|... ++||||++++.+ ...+.||
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~-~veyKyv~~~~~-~~~~~WE 79 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGR-NIEFKAIKKSKD-GTNKSWQ 79 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCC-cEEEEEEEEcCC-CCeeEEe
Confidence 678999999999999999999999999999999862 5554 35679999999999986 899999999655 2267799
Q ss_pred cCCCcccccCC
Q 004453 108 EGPNRLLTGGA 118 (753)
Q Consensus 108 ~g~NR~l~~~~ 118 (753)
.|+||.+..|.
T Consensus 80 ~g~nr~~~~p~ 90 (99)
T cd05809 80 GGQQSWYPVPL 90 (99)
T ss_pred cCCCeeEECCC
Confidence 99999999997
No 40
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.62 E-value=3.2e-15 Score=146.06 Aligned_cols=116 Identities=25% Similarity=0.292 Sum_probs=89.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~ 429 (753)
++++|||+|||||||||||++|.++|...|+++.+++.|.+|+ +...+.+|..+++.+.++++.++|+.+.+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~---~l~~dl~fs~~dR~e~~rr~~~~A~ll~~----- 72 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH---GLNADLGFSKEDREENIRRIAEVAKLLAD----- 72 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT---TTTTT--SSHHHHHHHHHHHHHHHHHHHH-----
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh---ccCCCCCCCHHHHHHHHHHHHHHHHHHHh-----
Confidence 4789999999999999999999999999999999999999876 45566778777888889888888888666
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHH
Q 004453 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIER 477 (753)
Q Consensus 430 l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~r 477 (753)
+|.+||++++.+.++.|+.++++.... .++.|.+.|+-+.+.+|
T Consensus 73 ---~G~ivIva~isp~~~~R~~~R~~~~~~-~f~eVyv~~~~e~~~~R 116 (156)
T PF01583_consen 73 ---QGIIVIVAFISPYREDREWARELIPNE-RFIEVYVDCPLEVCRKR 116 (156)
T ss_dssp ---TTSEEEEE----SHHHHHHHHHHHHTT-EEEEEEEES-HHHHHHH
T ss_pred ---CCCeEEEeeccCchHHHHHHHHhCCcC-ceEEEEeCCCHHHHHHh
Confidence 999999999999999999999995432 55556667865555444
No 41
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=99.62 E-value=1.9e-15 Score=135.42 Aligned_cols=83 Identities=25% Similarity=0.471 Sum_probs=75.1
Q ss_pred EEEEEEEecccCCCceEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEEecCCCCCceeeccCCC
Q 004453 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPN 111 (753)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~g~N 111 (753)
-|+|+|++ ++..++.++|+||++.||+||+++|++|+....+.|++++++|... ++||||++++. ...+.||.|+|
T Consensus 2 ~v~F~v~~-~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~-~~eYKy~~~~~--~~~~~WE~~~n 77 (95)
T cd05808 2 AVTFNVTA-TTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGT-AIEYKYIKKDG--SGTVTWESGPN 77 (95)
T ss_pred eEEEEEEE-ECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCC-eEEEEEEEECC--CCcEEEecCCC
Confidence 48899999 7889999999999999999999999999999999999999999976 89999999853 34567999999
Q ss_pred cccccCC
Q 004453 112 RLLTGGA 118 (753)
Q Consensus 112 R~l~~~~ 118 (753)
|.+..|.
T Consensus 78 r~~~~~~ 84 (95)
T cd05808 78 RTATTPA 84 (95)
T ss_pred EEEECCC
Confidence 9999765
No 42
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=99.60 E-value=3.2e-14 Score=139.93 Aligned_cols=135 Identities=19% Similarity=0.245 Sum_probs=93.6
Q ss_pred ccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc---CCCceeecc
Q 004453 560 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA---GFPKIQWRA 636 (753)
Q Consensus 560 r~IyLVRHGEs~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~---g~~v~~~~~ 636 (753)
|+|||||||++.++.. ...|.|||++|++||+.++++|... ...++.|||||+.||+|||+++. +.+... ..
T Consensus 1 m~l~lvRHg~a~~~~~--~d~~rpLt~~G~~qa~~~~~~l~~~--~~~~d~i~sSp~~Ra~qTa~~l~~~~~~~~~~-~~ 75 (159)
T PRK10848 1 MQVFIMRHGDAALDAA--SDSVRPLTTCGCDESRLMANWLKGQ--KVDIERVLVSPYLRAEQTLEVVGECLNLPASA-EV 75 (159)
T ss_pred CEEEEEeCCCCCCCCC--CCcCCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEECCHHHHHHHHHHHHHHhCCCCce-EE
Confidence 4799999999988742 1126799999999999999998754 45789999999999999999982 222111 11
Q ss_pred ccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC-CCcEEEEecHHHHHHHHHH
Q 004453 637 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ-RAPVVVISHQAVLRALYAY 715 (753)
Q Consensus 637 L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e-~~~VLIVSHg~vIr~Lla~ 715 (753)
+.++. |++ +. ..+..++..+..+ .++|+||+|...+..+..+
T Consensus 76 ~~~l~--------------------------------~~~-~~----~~~~~~l~~~~~~~~~~vllVgH~P~l~~l~~~ 118 (159)
T PRK10848 76 LPELT--------------------------------PCG-DV----GLVSAYLQALANEGVASVLVISHLPLVGYLVAE 118 (159)
T ss_pred ccCCC--------------------------------CCC-CH----HHHHHHHHHHHhcCCCeEEEEeCcCcHHHHHHH
Confidence 11221 111 11 1223333333322 4689999999999999999
Q ss_pred HhCCCCCCCCccccCCcEEEEEEEC
Q 004453 716 FADRPLKEIPHIETPLHTIIEIQMG 740 (753)
Q Consensus 716 llg~~~~~~~~l~~p~~sI~~L~~~ 740 (753)
+.+..... .++.+++..|+.+
T Consensus 119 L~~~~~~~----~~~t~~i~~l~~~ 139 (159)
T PRK10848 119 LCPGETPP----MFTTSAIACVTLD 139 (159)
T ss_pred HhCCCCCC----CcCCceEEEEEec
Confidence 98643211 3889999999987
No 43
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=99.59 E-value=6e-15 Score=135.21 Aligned_cols=92 Identities=24% Similarity=0.442 Sum_probs=79.3
Q ss_pred CceEEEEEEEEecccCCCceEEEecCCCccCCCCccccccCcccC----CCceEEEEecCCCCCceeEEEEEecCCCCCc
Q 004453 28 GGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRES----ASMWELSFVVPPNHETLDFKFLLKPKYGNGP 103 (753)
Q Consensus 28 ~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~----~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~ 103 (753)
+++.-|+|++.++. ..++.++|+|+++.||+||+++|++|+.++ .+.|..++++|... +|||||++++.+ ..
T Consensus 4 ~~~v~V~F~i~~~t-~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~-~veYKy~~~~~~--~~ 79 (106)
T cd05811 4 ATTVAVTFNERVTT-SYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGT-SFEYKFIRKESD--GS 79 (106)
T ss_pred CCEEEEEEEEeeEc-CCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCC-cEEEEEEEEcCC--Cc
Confidence 45677999999975 689999999999999999999999998764 58999999999965 799999998544 57
Q ss_pred eeeccCCCcccccCCCCCCc
Q 004453 104 CIVEEGPNRLLTGGALQGDS 123 (753)
Q Consensus 104 ~~wE~g~NR~l~~~~~~~~~ 123 (753)
+.||+|+||.+..|....+.
T Consensus 80 ~~WE~~~nr~~~~~~~~~~~ 99 (106)
T cd05811 80 VTWESDPNRSYTVPSGCGTT 99 (106)
T ss_pred EEEecCCCeEEECCCCCCcc
Confidence 89999999999999764433
No 44
>COG0645 Predicted kinase [General function prediction only]
Probab=99.58 E-value=9.7e-15 Score=142.84 Aligned_cols=143 Identities=16% Similarity=0.194 Sum_probs=116.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcC-----CCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG-----VNQSADFFRADNPEGMEARNEVAALAMED 425 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g-----~~~~~~~~~~~~~~~~~~~~~vA~~~l~d 425 (753)
+.+++|+|+||+||||+|+.|++.|++..+++|++ ||.+.| ..+...|........|..+...|..++.
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~i-----rk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~- 74 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVI-----RKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLS- 74 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhhcCceEEehHHH-----HHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHh-
Confidence 36899999999999999999999999888777666 999888 3334456667788889999999999998
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 004453 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 504 (753)
Q Consensus 426 ~~~~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~ 504 (753)
.|..||+|+++..+..|+.+..+ ...++.+..|.|.| ++++++.|+..|+ +|.+|+ +....
T Consensus 75 -------~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~a-p~~v~~~rl~aR~---~d~sDA-~~~il------ 136 (170)
T COG0645 75 -------SGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEA-PEEVLRGRLAARK---GDASDA-TFDIL------ 136 (170)
T ss_pred -------CCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCC-cHHHHHHHHHHhC---CCcccc-hHHHH------
Confidence 99999999999999999999998 77888887787777 5789999998874 467777 55555
Q ss_pred HHhcccccccCCCCC
Q 004453 505 RLANYEKVYEPVDEG 519 (753)
Q Consensus 505 Ri~~y~~~yEpl~e~ 519 (753)
..+...++|..+.
T Consensus 137 --~~q~~~~~~~~~~ 149 (170)
T COG0645 137 --RVQLAEDEPWTEW 149 (170)
T ss_pred --HHHHhhhCCcccc
Confidence 4445556777653
No 45
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.57 E-value=3.6e-15 Score=139.97 Aligned_cols=83 Identities=19% Similarity=0.422 Sum_probs=74.3
Q ss_pred EEEEEEecccCCCceEEEecCCCccCCCCccccccCccc--CCCceEEEEecCCCCCceeEEEEEecC----CCCCce--
Q 004453 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE--SASMWELSFVVPPNHETLDFKFLLKPK----YGNGPC-- 104 (753)
Q Consensus 33 v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~--~~~~W~~~l~~~~~~~~leyKf~~~~~----~~~~~~-- 104 (753)
|+|+|++|++..++.++|+|++++||+|++++|++|... ..+.|.+++++|... ++||||++++. .+...+
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~-~veYkY~~~~~~~~~~~~~~~~~ 81 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGV-DFQYRYFVAVVLNDSGPCQVIVR 81 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCC-eEEEEEEEEEeccCCCCccEEEe
Confidence 799999999999999999999999999999999999998 889999999999977 79999999864 333456
Q ss_pred eeccCCC-ccccc
Q 004453 105 IVEEGPN-RLLTG 116 (753)
Q Consensus 105 ~wE~g~N-R~l~~ 116 (753)
.||++.| |++..
T Consensus 82 ~WE~~~~~R~~~~ 94 (120)
T cd05814 82 KWETHLQPRSIKP 94 (120)
T ss_pred eccCCCCccEecc
Confidence 8999999 66653
No 46
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=99.57 E-value=8.5e-15 Score=133.17 Aligned_cols=85 Identities=24% Similarity=0.353 Sum_probs=71.5
Q ss_pred EEEEEEecccCCCceEEEecCCCccCCCCccccccCccc---CCCceEEEEecCCCCCceeEEEEEecCCCCCceeeccC
Q 004453 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE---SASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEG 109 (753)
Q Consensus 33 v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~---~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~g 109 (753)
|+|++... ...++.++|+||+++||+|++++|++|+.+ +.++|++++++|.. .++||||++++. +...+.||.|
T Consensus 2 l~f~i~~~-t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~-~~veYky~v~~~-~~~~~~wE~g 78 (101)
T cd05815 2 LSFKLPYY-TQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPG-FSSEYNYYVVDD-RKSVLRSESG 78 (101)
T ss_pred EEEEEEEE-ccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCC-CcEEEEEEEEcC-CCcEEEeecC
Confidence 56776654 556899999999999999999999999775 34589999999994 589999999865 4456779999
Q ss_pred CCcccccCCCC
Q 004453 110 PNRLLTGGALQ 120 (753)
Q Consensus 110 ~NR~l~~~~~~ 120 (753)
+||.+..|...
T Consensus 79 ~nr~~~~~~~~ 89 (101)
T cd05815 79 EKRKLVLPEGL 89 (101)
T ss_pred CCEeEECCccc
Confidence 99999999853
No 47
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.56 E-value=5.1e-14 Score=133.87 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=91.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADF-FRADNPEGMEARNEVAALAMEDMISWMH 431 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~-~~~~~~~~~~~~~~vA~~~l~d~~~~l~ 431 (753)
||+|+|+|||||||+|+.|++.++ ..+++.|.++..+.+....... ........++.....++..+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------- 67 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKAL-------- 67 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHH--------
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHH--------
Confidence 799999999999999999998866 6678888888866553222111 11111122222233333333
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHh
Q 004453 432 EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (753)
Q Consensus 432 ~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~ 507 (753)
+.|..+|+|+||..+..|+.+.++ .+.++.+.+|++.|+ .+++.+|+..|.... +.... .+++++++++++++
T Consensus 68 ~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~-~~~~~~R~~~R~~~~-~~~~~-~~~~~~~~~~~~~e 141 (143)
T PF13671_consen 68 RNGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAP-EETLRERLAQRNREG-DKRFE-VPEEVFDRMLARFE 141 (143)
T ss_dssp HTT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHH-HHHHHHHHHTTHCCC-TTS-----HHHHHHHHHHHH
T ss_pred HcCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECC-HHHHHHHHHhcCCcc-ccccc-CcHHHHHHHHHhhc
Confidence 378999999999999999999988 778999999999885 566777777776643 33323 45666666666554
No 48
>PLN02950 4-alpha-glucanotransferase
Probab=99.55 E-value=1.2e-14 Score=175.66 Aligned_cols=102 Identities=25% Similarity=0.405 Sum_probs=93.0
Q ss_pred CCCceEEEEEEEEecccCCCceEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEEecCCCCCcee
Q 004453 26 HAGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (753)
Q Consensus 26 ~~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~ 105 (753)
..+++.-|+|+|+||++..++.++|+||+++||+||+++|++|+.++++.|++++++|+...+|||||++++.+ +.+.
T Consensus 148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~~~~--g~v~ 225 (909)
T PLN02950 148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQTAE--GLVS 225 (909)
T ss_pred CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEEcCC--CceE
Confidence 45778899999999999999999999999999999999999999999999999999999988999999999754 5788
Q ss_pred eccCCCcccccCCCCCCceEEEEE
Q 004453 106 VEEGPNRLLTGGALQGDSRSALFR 129 (753)
Q Consensus 106 wE~g~NR~l~~~~~~~~~~~~~~~ 129 (753)
||+|+||.+++|.+.+++..+++.
T Consensus 226 WE~g~NR~~~~p~~~~~~~~~~~~ 249 (909)
T PLN02950 226 LELGVNRELSLDSSSGKPPSYIVA 249 (909)
T ss_pred EeeCCCceeecCcccCCceEEEec
Confidence 999999999999999777655443
No 49
>KOG4754 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=4.7e-14 Score=141.01 Aligned_cols=166 Identities=20% Similarity=0.241 Sum_probs=120.6
Q ss_pred CccEEEecccccccccCCCcCC---------CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcC-
Q 004453 559 PRPILLTRHGESRDNVRGRIGG---------DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAG- 628 (753)
Q Consensus 559 ~r~IyLVRHGEs~~N~~~~~~G---------D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~g- 628 (753)
-++||||||||..+|+.+.-.- |+.||+.|++|++.|+..+...--..+++.|++||++||+||+...++
T Consensus 14 ~KtiyLvRHgQg~HNV~g~~~h~ay~s~~~fD~~LTplG~~Qv~~l~~~~~A~qL~~~ieliv~SPMrRtLqT~v~~f~~ 93 (248)
T KOG4754|consen 14 CKTIYLVRHGQGIHNVAGEEDHKAYWSEDYFDPHLTPLGWKQVDNLRKHLMAKQLPNKIELIVVSPMRRTLQTMVIAFGG 93 (248)
T ss_pred ceEEEEEeccccccccCcccchhhhhhhhccccccCHHHHHHHHHHhhhhhhhhcCCceeEEEechHHHHHHHHHHHhcc
Confidence 5899999999999997753211 899999999999999988765411235899999999999999987722
Q ss_pred ---------CCceeeccc----cc-cccCcCC-CCCHHHHHHhChH-HHHHHhcC-cCCCCCCCCCCHHHHHHHHHHHHH
Q 004453 629 ---------FPKIQWRAL----DE-INAGVCD-GMTYEEIKKNMPE-EYEARKKD-KLRYRYPRGESYLDVIQRLEPVII 691 (753)
Q Consensus 629 ---------~~v~~~~~L----~E-i~~G~~e-glt~~ei~~~~P~-~~~~~~~d-~~~~r~P~GES~~dv~~Rl~~~I~ 691 (753)
.++.+.+.+ +| +.--.|+ +.+..+.++.||. .|.....+ .+.+++.-.|.+.+.+.|-+.++.
T Consensus 94 ~~~e~g~~~~p~~vsp~~i~~~rE~lG~hpCD~r~~v~~~~~lfp~~DFs~~~~dv~~~~~pdy~ed~e~~a~r~re~~~ 173 (248)
T KOG4754|consen 94 YLAEDGEDPAPVKVSPPFIAVCRETLGDHPCDRRSSVTDLMKLFPAYDFSLCETDVDPLKKPDYREDDEESAARSREFLE 173 (248)
T ss_pred eeccCCCcCCceeecchHHHHHHHHhCCCcccccchhHHHHhhcccccceeeccCcchhccCcchhhHHHHHHhHHHHHH
Confidence 245555666 66 4333444 4467778888873 23222222 233444467999999999999999
Q ss_pred HHHcC-CCcEEEEecHHHHHHHHHHHhC-CCCCCC
Q 004453 692 ELERQ-RAPVVVISHQAVLRALYAYFAD-RPLKEI 724 (753)
Q Consensus 692 eL~~e-~~~VLIVSHg~vIr~Lla~llg-~~~~~~ 724 (753)
.+... .+-|.||+|++.|+.++..+.. +..+..
T Consensus 174 ~l~~r~ek~iavvths~fl~~llk~i~k~cd~dv~ 208 (248)
T KOG4754|consen 174 WLAKRPEKEIAVVTHSGFLRSLLKKIQKDCDPDVK 208 (248)
T ss_pred HHHhCccceEEEEEehHHHHHHHHHhccccCcccc
Confidence 99664 5569999999999999988743 444433
No 50
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=99.54 E-value=1e-13 Score=136.02 Aligned_cols=142 Identities=18% Similarity=0.202 Sum_probs=102.6
Q ss_pred CccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcCC-Cceeeccc
Q 004453 559 PRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGF-PKIQWRAL 637 (753)
Q Consensus 559 ~r~IyLVRHGEs~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~g~-~v~~~~~L 637 (753)
|++|||+|||++++...+.-..|.+||++|+++++.+|++|+.+ ...+|.|+|||+.||+|||+.+... .......+
T Consensus 1 m~~L~LmRHgkA~~~~~~~~D~dR~Lt~~G~~ea~~~a~~L~~~--~~~~D~VL~Spa~Ra~QTae~v~~~~~~~~~~~~ 78 (163)
T COG2062 1 MMRLYLMRHGKAEWAAPGIADFDRPLTERGRKEAELVAAWLAGQ--GVEPDLVLVSPAVRARQTAEIVAEHLGEKKVEVF 78 (163)
T ss_pred CceEEEeecccccccCCCCCCccCcCCHHHHHHHHHHHHHHHhc--CCCCCEEEeChhHHHHHHHHHHHHhhCcccceec
Confidence 58999999999998876543448999999999999999999987 6689999999999999999988211 11111112
Q ss_pred cccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecHHHHHHHHHHHh
Q 004453 638 DEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFA 717 (753)
Q Consensus 638 ~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e~~~VLIVSHg~vIr~Lla~ll 717 (753)
.|+.+ ++. . ..+...|+++...-+.++||+|...+..|...+.
T Consensus 79 ~~l~p--------------------------------~~d-~----~~~l~~l~~~~d~v~~vllVgH~P~l~~l~~~L~ 121 (163)
T COG2062 79 EELLP--------------------------------NGD-P----GTVLDYLEALGDGVGSVLLVGHNPLLEELALLLA 121 (163)
T ss_pred cccCC--------------------------------CCC-H----HHHHHHHHHhcccCceEEEECCCccHHHHHHHHc
Confidence 22211 111 0 1122233333334468999999999999999998
Q ss_pred CCCCCCCCccccCCcEEEEEEECCC
Q 004453 718 DRPLKEIPHIETPLHTIIEIQMGVT 742 (753)
Q Consensus 718 g~~~~~~~~l~~p~~sI~~L~~~~~ 742 (753)
+. .-....+|.++|..++++..
T Consensus 122 ~~---~~~~~~fptsgia~l~~~~~ 143 (163)
T COG2062 122 GG---ARLPVKFPTSGIAVLEFDGK 143 (163)
T ss_pred cc---cccccCCCcccEEEEEeccc
Confidence 75 23455789999999998854
No 51
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.53 E-value=3.5e-14 Score=127.26 Aligned_cols=84 Identities=21% Similarity=0.340 Sum_probs=71.5
Q ss_pred EEEEEEEEecccCCCceEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEEecCCCCCceeeccCC
Q 004453 31 FYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGP 110 (753)
Q Consensus 31 ~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~g~ 110 (753)
+.|+|+++... ..++.++|+||+|+||+|| +|++|..+ .+.|++++++|... +|||||++++.+ +.+.||.|+
T Consensus 2 ~~v~F~~~~~~-~~Gq~l~v~G~~~~LG~W~--~~~~l~~~-~~~W~~~~~l~~~~-~ieyKy~~~~~~--~~v~WE~g~ 74 (92)
T cd05818 2 VKLQVRLDHQV-KFGEHVAILGSTKELGSWK--KKVPMNWT-ENGWVCDLELDGGE-LVEYKFVIVKRD--GSVIWEGGN 74 (92)
T ss_pred EEEEEEEEEEc-CCCCEEEEEeChHHHCCCC--CCCccccC-CCCEEEEEEeCCCC-cEEEEEEEEcCC--CCEEEEeCC
Confidence 46888888754 6899999999999999999 56777776 57899999999985 899999999755 467899999
Q ss_pred CcccccCCCCC
Q 004453 111 NRLLTGGALQG 121 (753)
Q Consensus 111 NR~l~~~~~~~ 121 (753)
||.+..|....
T Consensus 75 Nr~~~~~~~~~ 85 (92)
T cd05818 75 NRVLELPKEGN 85 (92)
T ss_pred CEEEEccCCCC
Confidence 99999996644
No 52
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.53 E-value=4e-14 Score=127.35 Aligned_cols=79 Identities=25% Similarity=0.418 Sum_probs=72.7
Q ss_pred EEEEEEEecccCCCceEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEEecCCCCCceeeccCCC
Q 004453 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPN 111 (753)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~g~N 111 (753)
-|+|+|++|++.+++.++|+||+++||+|++ +++|...+.+.|..++++|... ++||||++++ +...+.||.|+|
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~--~~~l~~~~~~~W~~~v~lp~~~-~ieYky~~~~--~~~~~~WE~~~n 76 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHS--YIPLQYVKDGFWSASVSLPVDT-HVEWKFVLVE--NGQVTRWEECSN 76 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCc--cccCcCCCCCCEEEEEEecCCC-cEEEEEEEEc--CCCEEEeecCCC
Confidence 4899999999999999999999999999996 8999999999999999999987 8999999975 456778999999
Q ss_pred cccc
Q 004453 112 RLLT 115 (753)
Q Consensus 112 R~l~ 115 (753)
|.+.
T Consensus 77 r~~~ 80 (95)
T cd05813 77 RLLE 80 (95)
T ss_pred eEEE
Confidence 9988
No 53
>KOG4609 consensus Predicted phosphoglycerate mutase [General function prediction only]
Probab=99.48 E-value=2.1e-13 Score=136.23 Aligned_cols=164 Identities=18% Similarity=0.188 Sum_probs=117.2
Q ss_pred CCccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc-----CCCce
Q 004453 558 TPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA-----GFPKI 632 (753)
Q Consensus 558 ~~r~IyLVRHGEs~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~-----g~~v~ 632 (753)
+.+.|+||||||-... +.-..||+.|++||+.+++.|.+. +.+++.|..|++.||.+||.+|+ +++..
T Consensus 93 atRhI~LiRHgeY~~~-----g~~~hLTelGReQAE~tGkRL~el--glk~d~vv~StM~RA~ETadIIlk~l~d~lk~~ 165 (284)
T KOG4609|consen 93 ATRHIFLIRHGEYHVD-----GSLEHLTELGREQAELTGKRLAEL--GLKFDKVVASTMVRATETADIILKHLPDDLKRV 165 (284)
T ss_pred hhceEEEEeccceecc-----CchhhcchhhHHHHHHHhHHHHHc--CCchhhhhhhhhhhhHHHHHHHHHhCCCcccee
Confidence 3489999999997432 223489999999999999999887 89999999999999999999993 23444
Q ss_pred eeccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHc------C-CCcEEEEec
Q 004453 633 QWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER------Q-RAPVVVISH 705 (753)
Q Consensus 633 ~~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~------e-~~~VLIVSH 705 (753)
..+.|.|-.. .++.+ . ... +++-.-+ |..=-.|++..+..... + +.-.|||+|
T Consensus 166 s~~ll~EGaP--~ppdP---------p-~k~-------wrp~~~q-y~rdgaRIEaafRryfhRA~p~QeedSy~liV~H 225 (284)
T KOG4609|consen 166 SCPLLREGAP--YPPDP---------P-VKH-------WRPLDPQ-YYRDGARIEAAFRRYFHRASPSQEEDSYELIVCH 225 (284)
T ss_pred cccccccCCC--CCCCC---------C-ccc-------CCccChH-hhhcchHHHHHHHHHHhhcCcccccccEEEEEee
Confidence 5555555321 00000 0 001 1111111 11123577777766522 1 334799999
Q ss_pred HHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCceEEEE
Q 004453 706 QAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKR 748 (753)
Q Consensus 706 g~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~~~r 748 (753)
++|||.+++..+..|++.+..|++.+|+|+.|+..+.|....|
T Consensus 226 aNVIRY~icRALq~PpegWlR~nlnh~SiTWlti~PsG~vsvr 268 (284)
T KOG4609|consen 226 ANVIRYFICRALQFPPEGWLRMNLNHCSITWLTISPSGHVSVR 268 (284)
T ss_pred cchhhhhhhhhhcCCcchhheecccCcceEEEEEccCCcEEEE
Confidence 9999999999999999999999999999999999877766554
No 54
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=99.48 E-value=1.2e-13 Score=127.72 Aligned_cols=83 Identities=27% Similarity=0.352 Sum_probs=72.3
Q ss_pred EEEEEEEecccCCCceEEEecCCCccCCCCccccccCccc-------CCCceEEEEecCCCC--CceeEEEEEecCCCCC
Q 004453 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE-------SASMWELSFVVPPNH--ETLDFKFLLKPKYGNG 102 (753)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~-------~~~~W~~~l~~~~~~--~~leyKf~~~~~~~~~ 102 (753)
-|||.|.|--+++++.++|+||.|+||+||+++|++|+.+ ..++|.+++++|... .+|||||++++ ..
T Consensus 2 ~~~f~~~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~~~---~~ 78 (112)
T cd05806 2 LFRFGVVLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLKRE---AG 78 (112)
T ss_pred EEEEEEEEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEEeC---CC
Confidence 4899999988899999999999999999999999999997 456899999999985 58999999975 33
Q ss_pred ceeec---cCCCcccccC
Q 004453 103 PCIVE---EGPNRLLTGG 117 (753)
Q Consensus 103 ~~~wE---~g~NR~l~~~ 117 (753)
.+.|| ..+||.+..-
T Consensus 79 ~v~WE~~~~~~nr~~~~~ 96 (112)
T cd05806 79 ALIWEGNGPHHDRCCVYD 96 (112)
T ss_pred eeEEecCCCCCCeEEecc
Confidence 78899 7789975543
No 55
>KOG3734 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=6.3e-13 Score=139.33 Aligned_cols=163 Identities=21% Similarity=0.213 Sum_probs=117.8
Q ss_pred CCCCccEEEecccccccccCCC------------c---------------CC------CCCCCHHHHHHHHHHHHHHHHH
Q 004453 556 HLTPRPILLTRHGESRDNVRGR------------I---------------GG------DTILSDAGEIYAKKLANFVEKR 602 (753)
Q Consensus 556 ~~~~r~IyLVRHGEs~~N~~~~------------~---------------~G------D~pLTe~G~~QA~~La~~L~~~ 602 (753)
+...+.|++|||||+.++..+. + .+ |+|||..|..|++..|+.|...
T Consensus 9 ~~~~~~i~vmRHgERvD~if~~~W~~~~~~~~~~y~~~d~n~p~~l~qr~~~~~~y~~d~pit~~g~~~~~~~gr~l~~a 88 (272)
T KOG3734|consen 9 IDVPRNIFVMRHGERVDNIFGKLWLKTCARPDGKYVPDDMNMPFRLPQRIRSPKGYPIDPPITVSGFIQCKLIGRELLNA 88 (272)
T ss_pred cCCCceEEEEEcccccccccchhhhhhhcCCCCCcCCCCccCCccccccccCcccCccCCCccchhHHHHHHHHHHHHhc
Confidence 5567999999999997732221 1 01 8899999999999999999876
Q ss_pred hcCCCCCEEEEcCcHHHHHHHHHh---cC----CCceeeccccccccCc----CCC-CCHHHHHHhChHHHHHHhcCc-C
Q 004453 603 LKSERAASIWTSTLQRTILTASPI---AG----FPKIQWRALDEINAGV----CDG-MTYEEIKKNMPEEYEARKKDK-L 669 (753)
Q Consensus 603 l~~~~~~~V~tSpl~RaiqTA~~i---~g----~~v~~~~~L~Ei~~G~----~eg-lt~~ei~~~~P~~~~~~~~d~-~ 669 (753)
+..++.||+||..||+|||..+ .+ ..+.+.+.|-|.-.-. ++. .+..+++...+..- ...++ +
T Consensus 89 --~~~i~~ifcSPs~r~VqTa~~i~~~~g~e~~~~i~vePgL~e~~~~~~~~~~p~~is~~el~~~~~~VD--~~y~P~~ 164 (272)
T KOG3734|consen 89 --GIAIDVIFCSPSLRCVQTAAKIKKGLGIEKKLKIRVEPGLFEPEKWPKDGKFPFFISPDELKFPGFPVD--LNYDPVY 164 (272)
T ss_pred --CCCcceeecCCchhHHHHHHHHHHhhchhcCeeEEecchhcchhhhcccCCCCCcCCHHHHhccCCCcc--cccchhh
Confidence 7789999999999999999988 33 5677888887763221 111 23444443221100 00011 0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEecHHHHHHHHHHHhCCCCC
Q 004453 670 RYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRALYAYFADRPLK 722 (753)
Q Consensus 670 ~~r~P~GES~~dv~~Rl~~~I~eL~~e--~~~VLIVSHg~vIr~Lla~llg~~~~ 722 (753)
...+-.+||++++..|...++.+|..+ ++++|||+||..+....+.|.|.+..
T Consensus 165 ~~~~~~~es~e~~~~R~~~~~k~i~~k~~~~~lLIV~H~~sv~~~~~~l~~~~~~ 219 (272)
T KOG3734|consen 165 KETPRWGESLEDCNDRIQKVFKAIADKYPNENLLIVAHGSSVDTCSAQLQGLPVR 219 (272)
T ss_pred hhcccccccHHHHHHHHHHHHHHHHHhcCCCceEEEeccchHHHHHHHhcCCCce
Confidence 122346899999999999999999775 56799999999999999999885543
No 56
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=99.44 E-value=1.3e-12 Score=132.40 Aligned_cols=117 Identities=17% Similarity=0.179 Sum_probs=79.3
Q ss_pred CccEEEecccccccccCCCcCC-CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc-CCCceeecc
Q 004453 559 PRPILLTRHGESRDNVRGRIGG-DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA-GFPKIQWRA 636 (753)
Q Consensus 559 ~r~IyLVRHGEs~~N~~~~~~G-D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~-g~~v~~~~~ 636 (753)
.++|||+||||+.....+.... +.|||++|++||+.++++|.+. ...+.|||||+.||+|||+++. +.++...+.
T Consensus 54 ~~~L~LiRHGet~~~~~~~~~sD~RpLTerG~~qA~~lg~~L~~~---~~~d~I~sSpa~Ra~qTAe~ia~~~~v~~~~~ 130 (201)
T PRK15416 54 HPVVVLFRHAERCDRSDNQCLSDKTGITVKGTQDARELGKAFSAD---IPDYDLYSSNTVRTIQSATWFSAGKKLTVDKR 130 (201)
T ss_pred CCEEEEEeCccccCccCCCCCCCCCCCCHHHHHHHHHHHHHHhCC---CCCCEEEECCCHHHHHHHHHHhcCCCcEecHH
Confidence 3679999999983222121111 3589999999999999988643 2337999999999999999984 334444444
Q ss_pred ccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecHHHHHHHHHHH
Q 004453 637 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYF 716 (753)
Q Consensus 637 L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e~~~VLIVSHg~vIr~Lla~l 716 (753)
|.|.+.+ ....+..++.+. .+++||||+|+..+..|....
T Consensus 131 Lye~~~~--------------------------------------~~~~i~~~i~~~--~~~tVLIVGHnp~i~~La~~~ 170 (201)
T PRK15416 131 LSDCGNG--------------------------------------IYSAIKDLQRKS--PDKNIVIFTHNHCLTYIAKDK 170 (201)
T ss_pred HhhcCch--------------------------------------hHHHHHHHHHhC--CCCEEEEEeCchhHHHHHHHh
Confidence 4444332 111222233222 236899999999999999876
Q ss_pred hC
Q 004453 717 AD 718 (753)
Q Consensus 717 lg 718 (753)
.+
T Consensus 171 ~~ 172 (201)
T PRK15416 171 RG 172 (201)
T ss_pred cC
Confidence 65
No 57
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.41 E-value=2e-12 Score=125.57 Aligned_cols=114 Identities=22% Similarity=0.194 Sum_probs=86.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~~ 432 (753)
+|+|+|+|||||||+|+.|++.+.+.+.+...++.|.+|+.+.+ ...|.++.+.+.++.....++. +.+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~---~~~~~~~~~~~~~~~~~~~a~~--------l~~ 69 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNK---DLGFSREDREENIRRIAEVAKL--------LAD 69 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhh---ccCCCcchHHHHHHHHHHHHHH--------HHh
Confidence 58999999999999999999999888888888988889874432 2234444455545444444444 334
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHH
Q 004453 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERN 478 (753)
Q Consensus 433 ~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rn 478 (753)
+|.+||+|+++..+..|..++++.+ ++.+.++.+.|+.+++.+|+
T Consensus 70 ~G~~VIid~~~~~~~~R~~~~~l~~-~~~~~~i~l~~~~e~~~~R~ 114 (149)
T cd02027 70 AGLIVIAAFISPYREDREAARKIIG-GGDFLEVFVDTPLEVCEQRD 114 (149)
T ss_pred CCCEEEEccCCCCHHHHHHHHHhcC-CCCEEEEEEeCCHHHHHHhC
Confidence 8999999999999999999998865 67888888889766555554
No 58
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.40 E-value=3.7e-12 Score=136.65 Aligned_cols=145 Identities=18% Similarity=0.199 Sum_probs=99.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCC-CCCCCHH-HHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADF-FRADNPE-GMEARNEVAALAMEDMIS 428 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~-~~~~~~~-~~~~~~~vA~~~l~d~~~ 428 (753)
+.+|+|+|+|||||||+|++|++.+. ....++.|.+|+.+.+......+ +....+. ..+...+.+..++
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----- 72 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAAL----- 72 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHH-----
Confidence 57999999999999999999999873 34567888888866543322222 2111221 1222223333322
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHh
Q 004453 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (753)
Q Consensus 429 ~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~ 507 (753)
+.|..+|+|+++..+..|+.+.++ .++++.+.+|.+.| +.+++.+|+..|.. . . .+++.++...+|++
T Consensus 73 ---~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~-~~e~~~~R~~~R~~----~--~-~~~~~i~~~~~~~~ 141 (300)
T PHA02530 73 ---KSGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDV-PVEELVKRNRKRGE----R--A-VPEDVLRSMFKQMK 141 (300)
T ss_pred ---HcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCC-CHHHHHHHHHccCc----C--C-CCHHHHHHHHHHHH
Confidence 368999999999999999999888 66777777777777 56677777766621 1 1 46888899999999
Q ss_pred cccccccC
Q 004453 508 NYEKVYEP 515 (753)
Q Consensus 508 ~y~~~yEp 515 (753)
.|...-.|
T Consensus 142 ~~~~~~~p 149 (300)
T PHA02530 142 EYRGLVWP 149 (300)
T ss_pred HhcCCCCc
Confidence 88654333
No 59
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.37 E-value=8.5e-12 Score=132.75 Aligned_cols=135 Identities=19% Similarity=0.297 Sum_probs=82.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~~ 432 (753)
||+|||+|||||||+|++|.++|...+.++.+++.+.++ ... ..|.+...++..+. .+...++-...
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~-----~~~-~~y~~~~~Ek~~R~-------~l~s~v~r~ls 69 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG-----IDR-NDYADSKKEKEARG-------SLKSAVERALS 69 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH------TT-SSS--GGGHHHHHH-------HHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc-----cch-hhhhchhhhHHHHH-------HHHHHHHHhhc
Confidence 899999999999999999999999988899999876664 112 22554445543332 22222222223
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHh
Q 004453 433 GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (753)
Q Consensus 433 ~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~ 507 (753)
...+||+|++|..+..|..+.++ ++.+..+..|.|.|+.+.++++|..+... ..| +++.+.++..|++
T Consensus 70 ~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~--~~~-----~~e~i~~m~~RfE 138 (270)
T PF08433_consen 70 KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEP--ERY-----PEETIDDMIQRFE 138 (270)
T ss_dssp T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S----S------HHHHHHHHHH--
T ss_pred cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCC--CCC-----CHHHHHHHHHHhc
Confidence 56999999999999999999999 77888888888899988999999544321 112 4667777777654
No 60
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.37 E-value=4.9e-12 Score=145.23 Aligned_cols=137 Identities=18% Similarity=0.204 Sum_probs=95.3
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~ 428 (753)
..|.||+|+|+|||||||+|+++.+.+++. ++|.|.+. .++.....|+.+|.
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~-----~vn~D~lg-------------------~~~~~~~~a~~~L~---- 418 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYK-----HVNADTLG-------------------STQNCLTACERALD---- 418 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCe-----EECcHHHH-------------------HHHHHHHHHHHHHh----
Confidence 568999999999999999999999875543 45544431 12333445555555
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHh
Q 004453 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (753)
Q Consensus 429 ~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~ 507 (753)
.|..||+|+||.+++.|+.+.++ .++++.+.++.+.|+ .+++++|++.|.. .+.++..-++.++..|.++
T Consensus 419 ----~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p-~e~~~~Rn~~R~~--~~~s~~~vp~~v~~~~~k~-- 489 (526)
T TIGR01663 419 ----QGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAP-LAQAKHNIAFREL--SDSAHIKIKDMVFNGMKKK-- 489 (526)
T ss_pred ----CCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCC-HHHHHHHHHhhcc--CCcccCCCCHHHHHHHHhh--
Confidence 89999999999999999999999 788999999998886 5566666666644 2223331245665555544
Q ss_pred cccccccCCC--CC-ceEEEeec
Q 004453 508 NYEKVYEPVD--EG-SYIKMIDM 527 (753)
Q Consensus 508 ~y~~~yEpl~--e~-~yik~i~~ 527 (753)
|||.+ |+ .-|.-||+
T Consensus 490 -----fE~Pt~~EGF~~I~~v~f 507 (526)
T TIGR01663 490 -----FEAPALAEGFIAIHEINF 507 (526)
T ss_pred -----CCCCCcccCceEEEEEeC
Confidence 45544 33 44556666
No 61
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.31 E-value=1.3e-11 Score=129.50 Aligned_cols=113 Identities=22% Similarity=0.186 Sum_probs=79.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~~ 432 (753)
||+|+|+|||||||+|++|+++|...+.+..+++.|.+|+.... +....+. .++.....++.-+.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~-------~~~~~e~-------~~~~~~~~~i~~~l~ 66 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV-------WKEKYEE-------FIRDSTLYLIKTALK 66 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH-------hhHHhHH-------HHHHHHHHHHHHHHh
Confidence 68999999999999999999999988888889988888774310 1111111 111111112222233
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHH
Q 004453 433 GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNI 479 (753)
Q Consensus 433 ~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni 479 (753)
.|..||+|++|..+..|..+.++ ...++.+..|.+.|+.+.+++||.
T Consensus 67 ~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~ 114 (249)
T TIGR03574 67 NKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNI 114 (249)
T ss_pred CCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHH
Confidence 68899999999999988888877 566777777777787666666654
No 62
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.29 E-value=2.7e-11 Score=121.21 Aligned_cols=118 Identities=25% Similarity=0.270 Sum_probs=87.2
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~ 427 (753)
.+.+.+|+|+|+|||||||+|+.|.+.+...+..+..++.|.+|+.+. ....|......+.++.+..++...+
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~---- 87 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLN---KDLGFSEEDRKENIRRIGEVAKLFV---- 87 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhc---cccCCCHHHHHHHHHHHHHHHHHHH----
Confidence 356789999999999999999999999987777778889888887543 2233444444555555545555444
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHH
Q 004453 428 SWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIER 477 (753)
Q Consensus 428 ~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~r 477 (753)
..|.+||+|++++.+..|+.++.+.+.. .++++.+.|+.+.+++|
T Consensus 88 ----~~G~~VI~d~~~~~~~~r~~~~~~~~~~-~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 88 ----RNGIIVITSFISPYRADRQMVRELIEKG-EFIEVFVDCPLEVCEQR 132 (184)
T ss_pred ----cCCCEEEEecCCCCHHHHHHHHHhCcCC-CeEEEEEeCCHHHHHHh
Confidence 4899999999999999999999984322 45566667876666555
No 63
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.29 E-value=2.3e-11 Score=122.14 Aligned_cols=136 Identities=21% Similarity=0.137 Sum_probs=91.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~~ 432 (753)
||+++|+|||||||+|+.|++.|+..++++..+ ..+|++..+ .+++++-..+...+...+-+..++...+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l-~kdy~~~i~----~DEslpi~ke~yres~~ks~~rlldSal----- 72 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHL-EKDYLRGIL----WDESLPILKEVYRESFLKSVERLLDSAL----- 72 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhcccc-chhhhhhee----cccccchHHHHHHHHHHHHHHHHHHHHh-----
Confidence 899999999999999999999999887777555 335655221 1222222222222223333333555333
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHh
Q 004453 433 GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (753)
Q Consensus 433 ~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~ 507 (753)
....||+|+||..+..|..+... ++....+-.|.+.|+.+.++++|..+. .| -+++.++.++.|++
T Consensus 73 kn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erg---ep------ip~Evl~qly~RfE 139 (261)
T COG4088 73 KNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERG---EP------IPEEVLRQLYDRFE 139 (261)
T ss_pred cceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCC---CC------CCHHHHHHHHHhhc
Confidence 26899999999999988888877 666666667778898888888883221 12 46788777777754
No 64
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.28 E-value=2e-11 Score=142.12 Aligned_cols=145 Identities=16% Similarity=0.153 Sum_probs=110.0
Q ss_pred cccccCCCcccchhhhhhcccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhh-cCCceEEEeccchhhhhcCCCCC
Q 004453 322 ETKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRRLKHGVNQS 400 (753)
Q Consensus 322 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~-~gi~t~v~n~d~yRr~~~g~~~~ 400 (753)
......|++......+++......+..+++.+|||+|+|||||||+|++|++.|++ .+.....++.|.+|+.+. ..
T Consensus 363 ~~G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~---ge 439 (568)
T PRK05537 363 REGLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS---SE 439 (568)
T ss_pred HCCCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc---CC
Confidence 35577888888778888888888777888999999999999999999999999997 777888899998887543 33
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHH
Q 004453 401 ADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNI 479 (753)
Q Consensus 401 ~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni 479 (753)
..|...+++..++.+..++..++. .|.+||+|++++.++.|+.++++ .+.+ .+++|.+.|+ .+.+.+|+
T Consensus 440 ~~f~~~er~~~~~~l~~~a~~v~~--------~Gg~vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p-~e~l~~R~ 509 (568)
T PRK05537 440 LGFSKEDRDLNILRIGFVASEITK--------NGGIAICAPIAPYRATRREVREMIEAYG-GFIEVHVATP-LEVCEQRD 509 (568)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh--------CCCEEEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCC-HHHHHHhc
Confidence 445544555556655556665555 89999999999999999999998 4434 3444444564 45555554
No 65
>PRK06762 hypothetical protein; Provisional
Probab=99.28 E-value=2.5e-11 Score=119.11 Aligned_cols=112 Identities=15% Similarity=0.078 Sum_probs=77.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l 430 (753)
|.+|+|+|+|||||||+|++|++.++ ....+++.|.+|+.+.+... . .+....+.+.+.++..+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~---~~~~~i~~D~~r~~l~~~~~---~---~~~~~~~~~~~~~~~~~------- 65 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG---RGTLLVSQDVVRRDMLRVKD---G---PGNLSIDLIEQLVRYGL------- 65 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEecHHHHHHHhccccC---C---CCCcCHHHHHHHHHHHH-------
Confidence 67999999999999999999999873 35677888999885432211 1 11112222333333333
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHH
Q 004453 431 HEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNI 479 (753)
Q Consensus 431 ~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni 479 (753)
+.|.+||+|+++.....|..++.+ ...++++.++.+.++.+.+++|+.
T Consensus 66 -~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~ 114 (166)
T PRK06762 66 -GHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHS 114 (166)
T ss_pred -hCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHh
Confidence 379999999999888888888888 555666666666776566665554
No 66
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=99.28 E-value=1.7e-11 Score=117.29 Aligned_cols=101 Identities=27% Similarity=0.370 Sum_probs=92.6
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~ 427 (753)
.+...+|||+||+||||||+|-+|.++|...|.-+++++.|++ ++|++.+.+|..+++.+..++..++|+...+
T Consensus 28 ~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNv---RhGLN~DL~F~a~dR~ENIRRigeVaKLFAD--- 101 (207)
T KOG0635|consen 28 KQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNV---RHGLNKDLGFKAEDRNENIRRIGEVAKLFAD--- 101 (207)
T ss_pred cCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccc---ccccccccCcchhhhhhhHHHHHHHHHHHhc---
Confidence 4678899999999999999999999999999999999999998 4799999999999999999999999999666
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCC
Q 004453 428 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGN 459 (753)
Q Consensus 428 ~~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~ 459 (753)
.|.+.|..-..+.+..|+..+++ .+..
T Consensus 102 -----ag~iciaSlISPYR~dRdacRel~~~~~ 129 (207)
T KOG0635|consen 102 -----AGVICIASLISPYRKDRDACRELLPEGD 129 (207)
T ss_pred -----cceeeeehhcCchhccHHHHHHhccCCC
Confidence 89999999999999999999999 4443
No 67
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.27 E-value=4.7e-11 Score=115.10 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=76.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG--VNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g--~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l 430 (753)
+|+|+|+|||||||+|+.|++.+++ ..++.|.+|+.... ......+.....+.....+...+.. .+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~-----~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l 68 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGA-----PFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLA-------KL 68 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCC-----EEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHH-------HH
Confidence 5899999999999999999998654 34666666652110 0011122222223333333222221 22
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhh
Q 004453 431 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (753)
Q Consensus 431 ~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~ 483 (753)
...|..+|+|+++..+..|+.+..+. ++..+.+|.+.|+ .+++++|+.+|.
T Consensus 69 ~~~~~~vVid~~~~~~~~r~~~~~~~-~~~~~~~v~l~~~-~~~~~~R~~~R~ 119 (150)
T cd02021 69 ASAGEGVVVACSALKRIYRDILRGGA-ANPRVRFVHLDGP-REVLAERLAARK 119 (150)
T ss_pred HhCCCCEEEEeccccHHHHHHHHhcC-CCCCEEEEEEECC-HHHHHHHHHhcc
Confidence 23688899999999999998888887 6677888888885 667788887774
No 68
>COG4639 Predicted kinase [General function prediction only]
Probab=99.25 E-value=4.3e-11 Score=115.63 Aligned_cols=113 Identities=21% Similarity=0.199 Sum_probs=86.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l 430 (753)
+.|++|+|+|||||||+|+..- ...++++.+++|+.+ |......-....++...+...+.++..++
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~-------~~~~~lsld~~r~~l-g~~~~~e~sqk~~~~~~~~l~~~l~qrl~------ 67 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENF-------LQNYVLSLDDLRLLL-GVSASKENSQKNDELVWDILYKQLEQRLR------ 67 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhC-------CCcceecHHHHHHHh-hhchhhhhccccHHHHHHHHHHHHHHHHH------
Confidence 4699999999999999997643 467789999998843 32222222222233455556666666666
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHH
Q 004453 431 HEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNI 479 (753)
Q Consensus 431 ~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni 479 (753)
.|...|+||||..++.|+.+.++ ..+++..++|++..+...+..||-
T Consensus 68 --~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk 115 (168)
T COG4639 68 --RGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNK 115 (168)
T ss_pred --cCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhh
Confidence 89999999999999999999999 789999999999988777888773
No 69
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.24 E-value=6.2e-11 Score=117.83 Aligned_cols=117 Identities=17% Similarity=0.104 Sum_probs=76.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCC--------C--CCCCC-CCHHHHHHHHHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--------A--DFFRA-DNPEGMEARNEVAA 420 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~--------~--~~~~~-~~~~~~~~~~~vA~ 420 (753)
.+|+|+|+|||||||+|++|++.+.... ..++.|.|+..+...... . ...++ .....|..+...+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 79 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPW---LHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVA 79 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCc---cccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHH
Confidence 4899999999999999999999875321 234666666543221111 0 01111 12234555555555
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCC-CHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHh
Q 004453 421 LAMEDMISWMHEGGQVGIFDATNS-SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (753)
Q Consensus 421 ~~l~d~~~~l~~~G~vVIlDATn~-~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r 482 (753)
.+++ .|.+||+|+++. .+..|+.+..+. +.++++|.+.|+++ ++++|+.+|
T Consensus 80 ~~l~--------~G~~VIvD~~~~~~~~~r~~~~~~~--~~~~~~v~l~~~~~-~l~~R~~~R 131 (175)
T cd00227 80 AMAR--------AGANVIADDVFLGRAALQDCWRSFV--GLDVLWVGVRCPGE-VAEGRETAR 131 (175)
T ss_pred HHHh--------CCCcEEEeeeccCCHHHHHHHHHhc--CCCEEEEEEECCHH-HHHHHHHhc
Confidence 5555 899999999998 677777777664 35688999999865 555555544
No 70
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.24 E-value=1.1e-10 Score=115.69 Aligned_cols=116 Identities=19% Similarity=0.179 Sum_probs=83.9
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~ 428 (753)
+.+.+|+|+|+|||||||+|+.|++.|...+.+..+++.|.+|+.+. ....+..+.++..++....++.....
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~---~~~~~~~~~r~~~~~~~~~~a~~~~~---- 74 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLS---KGLGFSKEDRDTNIRRIGFVANLLTR---- 74 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHh---cCCCCChhhHHHHHHHHHHHHHHHHh----
Confidence 45679999999999999999999999988888888899998887543 12234444555556655555554333
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHH
Q 004453 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERN 478 (753)
Q Consensus 429 ~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rn 478 (753)
.|.+||+|+++..+..|+.++.+.. .+.+|.+.|+.+++.+|+
T Consensus 75 ----~g~~vi~~~~~~~~~~~~~l~~~~~---~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 75 ----HGVIVLVSAISPYRETREEVRANIG---NFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred ----CCCEEEEecCCCCHHHHHHHHhhcC---CeEEEEEcCCHHHHHHhC
Confidence 7999999999988888877777642 344555568766555554
No 71
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.21 E-value=1.6e-10 Score=117.30 Aligned_cols=119 Identities=24% Similarity=0.248 Sum_probs=91.0
Q ss_pred CCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 004453 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (753)
Q Consensus 346 ~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d 425 (753)
+.+++|.+|+|+|+|||||||+|+.|++.|...+..+..++.|++|+.+.+ ...|....+.+.++.+..+|..+++
T Consensus 19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~---~~~~~~~~~~~~~~~l~~~a~~~~~- 94 (198)
T PRK03846 19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCS---DLGFSDADRKENIRRVGEVAKLMVD- 94 (198)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhh---cCCcCcccHHHHHHHHHHHHHHHhh-
Confidence 445788999999999999999999999999877888889999989864432 2345555666777776666666555
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHH
Q 004453 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIER 477 (753)
Q Consensus 426 ~~~~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~r 477 (753)
.|.+||.+..++.++.|+.++++ .+.+ +++|.+.|+.+.+.+|
T Consensus 95 -------~G~~VI~~~~~~~~~~R~~~r~~l~~~~--~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 95 -------AGLVVLTAFISPHRAERQMVRERLGEGE--FIEVFVDTPLAICEAR 138 (198)
T ss_pred -------CCCEEEEEeCCCCHHHHHHHHHHcccCC--EEEEEEcCCHHHHHhc
Confidence 79999999988899999999998 4443 4455566765555444
No 72
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.20 E-value=9.8e-11 Score=138.61 Aligned_cols=120 Identities=20% Similarity=0.213 Sum_probs=91.7
Q ss_pred CCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 004453 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (753)
Q Consensus 346 ~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d 425 (753)
+.+.+|.+|||+|+|||||||+|++|++.|.+.+.....++.|.+|+.+. ....|.++.+...++.+..+|+..++
T Consensus 455 ~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~---~~~~~~~~~r~~~~~~l~~~a~~~~~- 530 (632)
T PRK05506 455 RKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLN---RDLGFSDADRVENIRRVAEVARLMAD- 530 (632)
T ss_pred HhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccC---CCCCCCHHHHHHHHHHHHHHHHHHHh-
Confidence 34557999999999999999999999999998888889999999988443 23445555567777777666666555
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHH
Q 004453 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIER 477 (753)
Q Consensus 426 ~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~r 477 (753)
.|.+||+|++++.+..|+.++++.... .+.++.+.|+.+.+.+|
T Consensus 531 -------~G~~Vivda~~~~~~~R~~~r~l~~~~-~~~~v~L~~~~e~~~~R 574 (632)
T PRK05506 531 -------AGLIVLVSFISPFREERELARALHGEG-EFVEVFVDTPLEVCEAR 574 (632)
T ss_pred -------CCCEEEEECCCCCHHHHHHHHHhcccC-CeEEEEECCCHHHHHhh
Confidence 899999999999999999999884322 44455556654444444
No 73
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.11 E-value=1.3e-10 Score=115.14 Aligned_cols=137 Identities=22% Similarity=0.276 Sum_probs=96.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAAL-AMEDMISWMH 431 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~-~l~d~~~~l~ 431 (753)
=|+|+|+||+||||++++|++.|+...+++|.+ -....|. +...+|....+..++.++..+.. ++.
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~-----Ie~~~g~-sI~eIF~~~GE~~FR~~E~~vl~~l~~------- 70 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPFIDTDQE-----IEKRTGM-SIAEIFEEEGEEGFRRLETEVLKELLE------- 70 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCcccchHH-----HHHHHCc-CHHHHHHHHhHHHHHHHHHHHHHHHhh-------
Confidence 489999999999999999999998877777655 3334442 34567888888888888754443 333
Q ss_pred cCCeEEEEeCC--CCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCCh-HHHHHHHHHHHhc
Q 004453 432 EGGQVGIFDAT--NSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNRLAN 508 (753)
Q Consensus 432 ~~G~vVIlDAT--n~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~-e~al~df~~Ri~~ 508 (753)
.+..||--+. ...++.|+.+.+ ++ .++|++ .+.+.+.+|+.. ...+|.+.+. ++ +...+.|.+|...
T Consensus 71 -~~~~ViaTGGG~v~~~enr~~l~~---~g-~vv~L~---~~~e~l~~Rl~~-~~~RPll~~~-~~~~~l~~L~~~R~~~ 140 (172)
T COG0703 71 -EDNAVIATGGGAVLSEENRNLLKK---RG-IVVYLD---APFETLYERLQR-DRKRPLLQTE-DPREELEELLEERQPL 140 (172)
T ss_pred -cCCeEEECCCccccCHHHHHHHHh---CC-eEEEEe---CCHHHHHHHhcc-ccCCCcccCC-ChHHHHHHHHHHHHHH
Confidence 3334443222 224455555444 33 677886 578899999984 4568999988 77 6677888899999
Q ss_pred cccc
Q 004453 509 YEKV 512 (753)
Q Consensus 509 y~~~ 512 (753)
|++.
T Consensus 141 Y~e~ 144 (172)
T COG0703 141 YREV 144 (172)
T ss_pred HHHh
Confidence 8765
No 74
>PLN02950 4-alpha-glucanotransferase
Probab=99.09 E-value=2.9e-10 Score=137.95 Aligned_cols=86 Identities=24% Similarity=0.290 Sum_probs=74.1
Q ss_pred EEEEEEecccC-CCceEEEecCCCccCCCCccccccCcccCC---CceEEEEecCCCCCceeEEEEEecCCCCCceeecc
Q 004453 33 VSLKMVNIKLK-GDLIPHVYGSVPLVGSWDSSKALAMGRESA---SMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEE 108 (753)
Q Consensus 33 v~lkv~aP~l~-~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~---~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~ 108 (753)
|+|+.++|... .++.++|+||.++||+||++||++|+.+++ +.|++++++|.. .++||||++++.+ ...+.||.
T Consensus 9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~-~~ieYKYv~v~~~-g~vi~WE~ 86 (909)
T PLN02950 9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEG-FSCEYSYYVVDDN-KNVLRWEA 86 (909)
T ss_pred EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCC-CeEEEEEEEEeCC-Cceeeeec
Confidence 66777788777 699999999999999999999999987754 489999999994 5799999998754 45678999
Q ss_pred CCCcccccCCCC
Q 004453 109 GPNRLLTGGALQ 120 (753)
Q Consensus 109 g~NR~l~~~~~~ 120 (753)
|+||.++.|...
T Consensus 87 g~NR~l~lp~~~ 98 (909)
T PLN02950 87 GKKRKLVLPEGL 98 (909)
T ss_pred CCCeeEECCccc
Confidence 999999999754
No 75
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.09 E-value=1.4e-09 Score=106.39 Aligned_cols=109 Identities=20% Similarity=0.309 Sum_probs=68.5
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh------hhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR------RLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR------r~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~ 427 (753)
|+|+|+|||||||+|+.|++.|++. +++.|+++ +...+ ..+........++...+.+...+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~-----~v~~D~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~--- 68 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAK-----FIEGDDLHPAANIEKMSAG----IPLNDDDRWPWLQNLNDASTAAAA--- 68 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCe-----EEeCccccChHHHHHHHcC----CCCChhhHHHHHHHHHHHHHHHHh---
Confidence 5799999999999999999998643 45555542 22222 122222233333333333333333
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhh
Q 004453 428 SWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (753)
Q Consensus 428 ~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~ 483 (753)
.|..+|+|+|+..+..|+.++ .++..+.++.+.|+ .+++.+|++.|.
T Consensus 69 -----~~~~~Vi~~t~~~~~~r~~~~---~~~~~~~~i~l~~~-~e~~~~R~~~R~ 115 (163)
T TIGR01313 69 -----KNKVGIITCSALKRHYRDILR---EAEPNLHFIYLSGD-KDVILERMKARK 115 (163)
T ss_pred -----cCCCEEEEecccHHHHHHHHH---hcCCCEEEEEEeCC-HHHHHHHHHhcc
Confidence 566679999999888887666 34555666666775 567777777663
No 76
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.08 E-value=6.9e-10 Score=121.46 Aligned_cols=127 Identities=19% Similarity=0.159 Sum_probs=82.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHh-hcCCceEEEeccchhh-----hhcCCCCCCCCCCCCCHHHHHHHHHHHH------
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRR-----LKHGVNQSADFFRADNPEGMEARNEVAA------ 420 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~-~~gi~t~v~n~d~yRr-----~~~g~~~~~~~~~~~~~~~~~~~~~vA~------ 420 (753)
+++|+||||+||||+++.|+..|. ..|+++.+++.|++-. ...|.... ..|...++...+.++..+.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~-~~~k~~R~~i~~~le~~v~a~~~g~ 79 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIP-SQWKQFRQELLKYLEHFLVAVINGS 79 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcH-HHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 478999999999999999999997 6899999999998731 11111111 1111111111111111110
Q ss_pred ----------HHHHHHHHHHhcC------------------------CeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEE
Q 004453 421 ----------LAMEDMISWMHEG------------------------GQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFL 465 (753)
Q Consensus 421 ----------~~l~d~~~~l~~~------------------------G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifI 465 (753)
.+..+.+..|+++ +..+|+|++|..+..|..+.++ ..++..+..|
T Consensus 80 ~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V 159 (340)
T TIGR03575 80 ELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQL 159 (340)
T ss_pred cccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 1111222334333 4579999999999999999999 6677788888
Q ss_pred EEEeCcHHHHHHHHH
Q 004453 466 ETICNDRDIIERNIR 480 (753)
Q Consensus 466 E~~c~d~~~i~rni~ 480 (753)
.+.|+.+.+++||-.
T Consensus 160 ~ld~ple~~l~RN~~ 174 (340)
T TIGR03575 160 FLDCPVESCLLRNKQ 174 (340)
T ss_pred EEeCCHHHHHHHHhc
Confidence 888987777766643
No 77
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.05 E-value=1.6e-09 Score=106.95 Aligned_cols=141 Identities=16% Similarity=0.204 Sum_probs=88.3
Q ss_pred EccCCCCHHHHHHHHHHHHhhcCCceEEEec-cchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 004453 357 VGLPARGKTFTAAKLTRYLRWLGHDTKHFNV-GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQ 435 (753)
Q Consensus 357 vGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~-d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~~~G~ 435 (753)
.|+|||||||+|+.|+..|+...++.|.+.. ..+|+...|.. +.+.........+...+...+ ...|.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 69 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEP----LNDDDRKPWLQALNDAAFAMQ-------RTNKV 69 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCC----CChhhHHHHHHHHHHHHHHHH-------HcCCc
Confidence 4999999999999999999866555555422 11343322221 111122222333333333222 23466
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHhcccccccC
Q 004453 436 VGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKVYEP 515 (753)
Q Consensus 436 vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~~y~~~yEp 515 (753)
.||+ +++..+..|+.+++ .++.+.||.|.| +.+++++|++.|.. ++ + +++.+ ..|...+||
T Consensus 70 ~viv-~s~~~~~~r~~~~~---~~~~~~~v~l~a-~~~~l~~Rl~~R~~---~~--a-~~~vl--------~~Q~~~~ep 130 (163)
T PRK11545 70 SLIV-CSALKKHYRDLLRE---GNPNLSFIYLKG-DFDVIESRLKARKG---HF--F-KTQML--------VTQFETLQE 130 (163)
T ss_pred eEEE-EecchHHHHHHHHc---cCCCEEEEEEEC-CHHHHHHHHHhccC---CC--C-CHHHH--------HHHHHHcCC
Confidence 6666 89998888877665 566788888888 57889999988853 34 3 56666 455567888
Q ss_pred CCCC-ceEEEeec
Q 004453 516 VDEG-SYIKMIDM 527 (753)
Q Consensus 516 l~e~-~yik~i~~ 527 (753)
+++. ..+..+|.
T Consensus 131 ~~~~e~~~~~id~ 143 (163)
T PRK11545 131 PGADETDVLVVDI 143 (163)
T ss_pred CCCCCCCEEEEeC
Confidence 8754 45566776
No 78
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.03 E-value=2.4e-09 Score=106.34 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=74.4
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~ 428 (753)
+.|.+|+|+|+|||||||+|+.|++.|...+..+.+++.+.+|+... ..+|......+.......++.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~----~~~~~~~~~~~~~~~~~~l~~-------- 72 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILG----HYGYDKQSRIEMALKRAKLAK-------- 72 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcC----CCCCCHHHHHHHHHHHHHHHH--------
Confidence 35789999999999999999999999987777778888888887431 112222112222222222222
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHH
Q 004453 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIR 480 (753)
Q Consensus 429 ~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~ 480 (753)
.+.+.|.+||+|+++..++.+..++.+.. .+.++|+ .|+. +.+.+|+.
T Consensus 73 ~l~~~g~~VI~~~~~~~~~~~~~~~~~~~-~~~~v~l--~~~~-e~~~~R~~ 120 (176)
T PRK05541 73 FLADQGMIVIVTTISMFDEIYAYNRKHLP-NYFEVYL--KCDM-EELIRRDQ 120 (176)
T ss_pred HHHhCCCEEEEEeCCcHHHHHHHHHhhcC-CeEEEEE--eCCH-HHHHHhch
Confidence 23347999999999987767776666633 2233344 5654 45555543
No 79
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=98.99 E-value=2.4e-09 Score=108.77 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=92.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCc-eEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHD-TKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 431 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~-t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~ 431 (753)
|||+||+|.|||||.|+.|.+.|...+.+ +..+..|. ..|......|.+..+++ .++..|...++.-.
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~de----slg~~~ns~y~~s~~EK-------~lRg~L~S~v~R~L 71 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDE----SLGIEKNSNYGDSQAEK-------ALRGKLRSAVDRSL 71 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechh----hcCCCCcccccccHHHH-------HHHHHHHHHHHhhc
Confidence 89999999999999999999999987755 43333222 35666666666555553 33333333333333
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHh
Q 004453 432 EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (753)
Q Consensus 432 ~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~ 507 (753)
..+.+||+|+.|..+..|..+.++ +......-.|.+-|+.+.+.+.| .. +..|+-.++ ..+.++++..|++
T Consensus 72 sk~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~N-s~--~~~p~e~gy--~~e~le~L~~RyE 143 (281)
T KOG3062|consen 72 SKGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWN-SE--REDPGEDGY--DDELLEALVQRYE 143 (281)
T ss_pred ccCcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhc-cc--CCCCCCCCC--CHHHHHHHHHHhh
Confidence 469999999999999999999988 44444444556666555565666 22 335655544 4566677777765
No 80
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.99 E-value=9.1e-09 Score=104.86 Aligned_cols=126 Identities=13% Similarity=0.116 Sum_probs=80.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCC-----C------CCCCC-CHH---HHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA-----D------FFRAD-NPE---GMEA 414 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~-----~------~~~~~-~~~---~~~~ 414 (753)
.+.+|+++|+||+||||+|+.|++.++ +. .++..|-+|+.+.+..... . ++++. .+. .|..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~---~~-~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~ 77 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRA---ID-IVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLD 77 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC---Ce-EEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHH
Confidence 467999999999999999999999864 32 2444555566544322111 1 12222 211 2222
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhh
Q 004453 415 RNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (753)
Q Consensus 415 ~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~ 484 (753)
..+.....+..+.+.+..+|..+|+|+++..+..++.... .+ +.++.+.+++++.+++|+..|..
T Consensus 78 q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~~---~~--v~~i~l~v~d~e~lr~Rl~~R~~ 142 (197)
T PRK12339 78 QARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENRT---NN--IRAFYLYIRDAELHRSRLADRIN 142 (197)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHh---cC--eEEEEEEeCCHHHHHHHHHHHhh
Confidence 3333344555666666668999999999999988754332 23 33455566789999999988864
No 81
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.99 E-value=1.7e-09 Score=104.01 Aligned_cols=139 Identities=18% Similarity=0.232 Sum_probs=79.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEG 433 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~~~ 433 (753)
|+++|+|||||||+|+.|+++|++..+ +.|.+.+...+... ..++....++.++.++.- ++..+...
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~-----~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~-------~~~~~~~~ 68 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFV-----DLDELIEQRAGMSI-PEIFAEEGEEGFRELERE-------VLLLLLTK 68 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEE-----EchHHHHHHcCCCH-HHHHHHHCHHHHHHHHHH-------HHHHHhcc
Confidence 789999999999999999999877654 44444554544321 233333344444433321 11123334
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHhccccc
Q 004453 434 GQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKV 512 (753)
Q Consensus 434 G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~~y~~~ 512 (753)
+..||...... .........+.. +..++||+ | +.+++.+|+..+. ..|.++.. ..+.+.+.|.+|.+.|++.
T Consensus 69 ~~~vi~~g~~~-i~~~~~~~~~~~-~~~~i~l~--~-~~e~~~~R~~~r~-~r~~~~~~-~~~~~~~~~~~r~~~Y~~~ 140 (154)
T cd00464 69 ENAVIATGGGA-VLREENRRLLLE-NGIVVWLD--A-SPEELLERLARDK-TRPLLQDE-DPERLRELLEEREPLYREV 140 (154)
T ss_pred CCcEEECCCCc-cCcHHHHHHHHc-CCeEEEEe--C-CHHHHHHHhccCC-CCCCCCCC-CHHHHHHHHHHHHHHHHHh
Confidence 55555443221 111111112233 34566775 4 5777778887764 56777765 4556677777887777554
No 82
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.94 E-value=2.4e-08 Score=112.58 Aligned_cols=130 Identities=12% Similarity=0.187 Sum_probs=94.6
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCC--------CC--------------CCC
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA--------DF--------------FRA 406 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~--------~~--------------~~~ 406 (753)
.+|.+|+++|.||+||||+|.+|+.++++. .+++.|.+|+.+.+.-... .| ..+
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~----~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~ 328 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGIT----RIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEP 328 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCc----EEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCccccccccc
Confidence 369999999999999999999999998763 2566677788654431110 00 001
Q ss_pred CCH---HHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhh
Q 004453 407 DNP---EGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (753)
Q Consensus 407 ~~~---~~~~~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~ 483 (753)
..+ .+|+...+++...++.+++...+.|.++|+|++++.+..++ .....+..++.++|.|+|++.+++|+..|.
T Consensus 329 ~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~---~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra 405 (475)
T PRK12337 329 TRAEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLR---HPYQAGALVVPMLVTLPDEALHRRRFELRD 405 (475)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHH---HHHhcCCceEEEEEEECCHHHHHHHHHHHh
Confidence 121 23444555555557778888777899999999999998765 233455678889999999999999999987
Q ss_pred hc
Q 004453 484 QQ 485 (753)
Q Consensus 484 ~~ 485 (753)
..
T Consensus 406 ~~ 407 (475)
T PRK12337 406 RE 407 (475)
T ss_pred hh
Confidence 64
No 83
>PRK13948 shikimate kinase; Provisional
Probab=98.93 E-value=4.4e-09 Score=105.86 Aligned_cols=138 Identities=16% Similarity=0.104 Sum_probs=89.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEV-AALAMEDMIS 428 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~v-A~~~l~d~~~ 428 (753)
.+..|+|+|+|||||||+++.|++.|++..+ +.|.+++...|... .++|....+..++.++.. ++.++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~i-----D~D~~ie~~~g~si-~~if~~~Ge~~fR~~E~~~l~~l~~---- 78 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFI-----DTDRYIERVTGKSI-PEIFRHLGEAYFRRCEAEVVRRLTR---- 78 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEE-----ECCHHHHHHHhCCH-HHHHHHhCHHHHHHHHHHHHHHHHh----
Confidence 5679999999999999999999999876654 44555776666533 355666677777766543 333322
Q ss_pred HHhcCCeEEEE--eCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 004453 429 WMHEGGQVGIF--DATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (753)
Q Consensus 429 ~l~~~G~vVIl--DATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri 506 (753)
.+..||. .++...++.|+.+++ ++ .++|+. + +.+.+.+|+.. ..+|...+....+...+.|.+|.
T Consensus 79 ----~~~~VIa~GgG~v~~~~n~~~l~~---~g-~vV~L~--~-~~e~l~~Rl~~--~~RPll~~~~~~~~l~~l~~~R~ 145 (182)
T PRK13948 79 ----LDYAVISLGGGTFMHEENRRKLLS---RG-PVVVLW--A-SPETIYERTRP--GDRPLLQVEDPLGRIRTLLNERE 145 (182)
T ss_pred ----cCCeEEECCCcEEcCHHHHHHHHc---CC-eEEEEE--C-CHHHHHHHhcC--CCCCCCCCCChHHHHHHHHHHHH
Confidence 3444443 245556677666553 43 567776 4 56777888843 34677754412345556667777
Q ss_pred hccc
Q 004453 507 ANYE 510 (753)
Q Consensus 507 ~~y~ 510 (753)
+.|+
T Consensus 146 ~~Y~ 149 (182)
T PRK13948 146 PVYR 149 (182)
T ss_pred HHHH
Confidence 7663
No 84
>PRK00625 shikimate kinase; Provisional
Probab=98.90 E-value=7e-09 Score=103.60 Aligned_cols=137 Identities=13% Similarity=0.107 Sum_probs=79.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGV---NQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~---~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~ 429 (753)
.|+|+|+|||||||+|+.|+++|++.. ++.|++-+...+. ....++|....++.++..+..+...+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~-----id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l------ 70 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPF-----FDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSL------ 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCE-----EEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHh------
Confidence 589999999999999999999987655 4445444433333 12334555566666666654433322
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHhcc
Q 004453 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 509 (753)
Q Consensus 430 l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~~y 509 (753)
. ....|| +.........+.+..+... ..++|++ .+.+.+.+|+..|.. .++.. ..+...+.|.+|.+.|
T Consensus 71 -~-~~~~VI-s~GGg~~~~~e~~~~l~~~-~~Vv~L~---~~~e~l~~Rl~~R~~-~~~~~---~~~~~~~ll~~R~~~Y 139 (173)
T PRK00625 71 -P-VIPSIV-ALGGGTLMIEPSYAHIRNR-GLLVLLS---LPIATIYQRLQKRGL-PERLK---HAPSLEEILSQRIDRM 139 (173)
T ss_pred -c-cCCeEE-ECCCCccCCHHHHHHHhcC-CEEEEEE---CCHHHHHHHHhcCCC-CcccC---cHHHHHHHHHHHHHHH
Confidence 2 233344 2222322222333334433 4577876 356788888876522 11121 2456667788888887
Q ss_pred cc
Q 004453 510 EK 511 (753)
Q Consensus 510 ~~ 511 (753)
++
T Consensus 140 ~~ 141 (173)
T PRK00625 140 RS 141 (173)
T ss_pred HH
Confidence 65
No 85
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=98.87 E-value=4.8e-09 Score=112.19 Aligned_cols=109 Identities=28% Similarity=0.337 Sum_probs=96.3
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~ 427 (753)
+-+...||++||+|+||||++-+|.++|..+|+.++-++.|++| +|++...+|.++++++.+++..++|+...+
T Consensus 47 gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnir---hgl~knlgfs~edreenirriaevaklfad--- 120 (627)
T KOG4238|consen 47 GFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIR---HGLNKNLGFSPEDREENIRRIAEVAKLFAD--- 120 (627)
T ss_pred CccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhh---hhhhhccCCCchhHHHHHHHHHHHHHHHhc---
Confidence 55788999999999999999999999999999999999999995 488889999999999999999999998666
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEe
Q 004453 428 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETIC 469 (753)
Q Consensus 428 ~~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c 469 (753)
.|.+.|-....+..+.|...+++ ...+.+ |+|+.+
T Consensus 121 -----aglvcitsfispf~~dr~~arkihe~~~l~--f~ev~v 156 (627)
T KOG4238|consen 121 -----AGLVCITSFISPFAKDRENARKIHESAGLP--FFEVFV 156 (627)
T ss_pred -----CCceeeehhcChhhhhhhhhhhhhcccCCc--eEEEEe
Confidence 89999999999999999999999 444555 555543
No 86
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.83 E-value=3.5e-08 Score=100.29 Aligned_cols=131 Identities=18% Similarity=0.295 Sum_probs=78.4
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~ 427 (753)
...|.+|+|.|-|||||||++..+...+. +....++|.|++|+...... .................+....+.++
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~ 86 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYD---ELLKADPDEASELTQKEASRLAEKLI 86 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHH---HHHHHHCCCTHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchh---hhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999988865 56778899999987331000 00000011122333444555566666
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHH-HHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhh
Q 004453 428 SWMHEGGQVGIFDATNSSRKRRN-MLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (753)
Q Consensus 428 ~~l~~~G~vVIlDATn~~~~~R~-~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~ 484 (753)
+++.+.+..+|+|.|+..++.-. .+..+++.||++..+-+.|+ +++-..|+..|..
T Consensus 87 ~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~-~e~s~~rv~~R~~ 143 (199)
T PF06414_consen 87 EYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVP-PELSIERVRQRYE 143 (199)
T ss_dssp HHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE----HHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECC-HHHHHHHHHHHHH
Confidence 67777899999999999877555 56666888998877766665 5655566666643
No 87
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.81 E-value=3e-09 Score=105.87 Aligned_cols=152 Identities=18% Similarity=0.270 Sum_probs=85.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCCCCCCCCCCHHHHHHH-------HHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAME 424 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~~~~~~~~~~~~~~~~-------~~vA~~~l~ 424 (753)
+|+++|.|||||||+|++|+++++.. +++.+++ |+.... ... ......... .+++..++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~-----~is~~d~lr~~~~~-~~~------~~~~~~~~~~~g~~~~~~~~~~ll~ 68 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFT-----HLSAGDLLRAEIKS-GSE------NGELIESMIKNGKIVPSEVTVKLLK 68 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCe-----EEECChHHHHHHhc-CCh------HHHHHHHHHHCCCcCCHHHHHHHHH
Confidence 58999999999999999999987543 4555433 543221 000 000000000 011111222
Q ss_pred HHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHHHc--CCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 004453 425 DMISWMHE-GGQVGIFDATNSSRKRRNMLMKMAE--GNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 501 (753)
Q Consensus 425 d~~~~l~~-~G~vVIlDATn~~~~~R~~l~~l~~--~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~d 501 (753)
+.+.+ .+..+|+|+...+.+.+..+.++.. ....+ +|.+.|+ ++++.+|+..|... .+- .++..+.
T Consensus 69 ---~~~~~~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~-~i~l~~~-~~~~~~Rl~~R~~~-~~r-----~dd~~e~ 137 (183)
T TIGR01359 69 ---NAIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKF-VLFFDCP-EEVMIKRLLKRGQS-SGR-----VDDNIES 137 (183)
T ss_pred ---HHHhccCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCE-EEEEECC-HHHHHHHHhcCCcc-CCC-----CCCCHHH
Confidence 12222 2678999999999988888887732 22332 4555675 55666666665331 111 1223456
Q ss_pred HHHHHhcccccccCCCC----CceEEEeec
Q 004453 502 FKNRLANYEKVYEPVDE----GSYIKMIDM 527 (753)
Q Consensus 502 f~~Ri~~y~~~yEpl~e----~~yik~i~~ 527 (753)
+.+|+..|.+...|+-+ ..++..||.
T Consensus 138 ~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~ 167 (183)
T TIGR01359 138 IKKRFRTYNEQTLPVIEHYENKGKVKEINA 167 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 77888888777666442 235566775
No 88
>PRK14532 adenylate kinase; Provisional
Probab=98.81 E-value=3.1e-08 Score=99.28 Aligned_cols=144 Identities=19% Similarity=0.271 Sum_probs=79.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCC-----CCCCCC---CCHHHHHHHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-----ADFFRA---DNPEGMEARNEVAALAME 424 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~-----~~~~~~---~~~~~~~~~~~vA~~~l~ 424 (753)
-|+|+|.|||||||+|+.|++++++.. ++.|++-|........ ..++.. ... ++....+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~-----is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~~~~ 69 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ-----LSTGDMLRAAIASGSELGQRVKGIMDRGELVSD-------EIVIALIE 69 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE-----EeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCH-------HHHHHHHH
Confidence 488999999999999999999876544 5555443322111000 000000 011 11111111
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH
Q 004453 425 DMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDF 502 (753)
Q Consensus 425 d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~v-ifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df 502 (753)
+.+.- ...+..+|+|+...+.++++.+.++ ...+..+ +.|.+.|+ ++++.+|+..|... .+ .++.-.+.|
T Consensus 70 ~~~~~-~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~-~~~~~~Rl~~R~~~-~~-----r~dd~~~~~ 141 (188)
T PRK14532 70 ERLPE-AEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVD-DEALIERIVKRFEE-QG-----RPDDNPEVF 141 (188)
T ss_pred HHHhC-cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCcCc-CC-----CCCCCHHHH
Confidence 11111 1246789999999999999988776 4445433 45566675 56666777665321 11 112223456
Q ss_pred HHHHhcccccccCC
Q 004453 503 KNRLANYEKVYEPV 516 (753)
Q Consensus 503 ~~Ri~~y~~~yEpl 516 (753)
.+|++.|.+...|+
T Consensus 142 ~~Rl~~~~~~~~~i 155 (188)
T PRK14532 142 VTRLDAYNAQTAPL 155 (188)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777775554443
No 89
>PRK13949 shikimate kinase; Provisional
Probab=98.80 E-value=9.8e-09 Score=102.03 Aligned_cols=140 Identities=20% Similarity=0.177 Sum_probs=78.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~~ 432 (753)
-|+++|.|||||||+|+.|++.|++..+++|.+ -+...+. ....+|....++.++.++.-+... +..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~-----i~~~~~~-~~~~~~~~~g~~~fr~~e~~~l~~-------l~~ 69 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFF-----IENRFHK-TVGDIFAERGEAVFRELERNMLHE-------VAE 69 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHH-----HHHHHCc-cHHHHHHHhCHHHHHHHHHHHHHH-------HHh
Confidence 389999999999999999999998766555533 2222222 122344445555555554332222 222
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHH----HHHHHHHhc
Q 004453 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGL----QDFKNRLAN 508 (753)
Q Consensus 433 ~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al----~df~~Ri~~ 508 (753)
....||.++ +......+....+.+.+ .++|+. .+.+.+.+|++.+...+|...+. ..+... +.|.+|.+.
T Consensus 70 ~~~~vis~G-gg~~~~~~~~~~l~~~~-~vi~L~---~~~~~~~~Ri~~~~~~RP~~~~~-~~~~~~~~i~~l~~~R~~~ 143 (169)
T PRK13949 70 FEDVVISTG-GGAPCFFDNMELMNASG-TTVYLK---VSPEVLFVRLRLAKQQRPLLKGK-SDEELLDFIIEALEKRAPF 143 (169)
T ss_pred CCCEEEEcC-CcccCCHHHHHHHHhCC-eEEEEE---CCHHHHHHHHhcCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHH
Confidence 344455343 33322222223333444 466776 36778889987655557877654 334332 345556665
Q ss_pred ccc
Q 004453 509 YEK 511 (753)
Q Consensus 509 y~~ 511 (753)
|++
T Consensus 144 Y~~ 146 (169)
T PRK13949 144 YRQ 146 (169)
T ss_pred HHh
Confidence 544
No 90
>PRK14531 adenylate kinase; Provisional
Probab=98.79 E-value=8.3e-09 Score=103.47 Aligned_cols=140 Identities=18% Similarity=0.188 Sum_probs=80.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCCCCCCCCCCHHHHH--H-----HHHHHHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGME--A-----RNEVAALAM 423 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~~~~~~~~~~~~~~--~-----~~~vA~~~l 423 (753)
.-|+++|.|||||||+|+.|+++++...++ .|+. |+....... + ...... . -.+++..++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is-----~gd~lr~~~~~~~~---~----~~~~~~~~~~G~~v~d~l~~~~~ 70 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS-----TGDLLRSEVAAGSA---L----GQEAEAVMNRGELVSDALVLAIV 70 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe-----cccHHHHHHhcCCH---H----HHHHHHHHHcCCCCCHHHHHHHH
Confidence 358999999999999999999997655443 3322 543321100 0 000000 0 001111111
Q ss_pred HHHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 004453 424 EDMISWMHE-GGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (753)
Q Consensus 424 ~d~~~~l~~-~G~vVIlDATn~~~~~R~~l~~l-~~~~~~v-ifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~ 500 (753)
. +.+.+ .+..+|+|+.+.+..+++.+.++ .+.+..+ .+|.+.| +++++.+|+..|.. +| |.+ +
T Consensus 71 ~---~~l~~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~-~~~~l~~Rl~~R~r--~d-----D~~---e 136 (183)
T PRK14531 71 E---SQLKALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLEL-DDAVLIERLLARGR--AD-----DNE---A 136 (183)
T ss_pred H---HHHhhccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEEC-CHHHHHHHhhcCCC--CC-----CCH---H
Confidence 1 12322 34557889999999988888776 3333322 2455567 46777888877632 11 223 3
Q ss_pred HHHHHHhcccccccCCC
Q 004453 501 DFKNRLANYEKVYEPVD 517 (753)
Q Consensus 501 df~~Ri~~y~~~yEpl~ 517 (753)
.+.+|++.|++..+|+-
T Consensus 137 ~i~~Rl~~y~~~~~pv~ 153 (183)
T PRK14531 137 VIRNRLEVYREKTAPLI 153 (183)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788888877777754
No 91
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.78 E-value=1.3e-07 Score=94.69 Aligned_cols=145 Identities=15% Similarity=0.175 Sum_probs=84.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc-chhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG-KYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d-~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l 430 (753)
-+++++|++||||||+++.|+..+....++.+.+... +.|+...|.. +.+.........+...+...+
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~----~~~~~~~~~~~~~~~~~~~~~------- 72 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIP----LTDEDRLPWLERLNDASYSLY------- 72 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCC----CCcccchHHHHHHHHHHHHHH-------
Confidence 3789999999999999999999887543333322111 1344333322 222112122222233332211
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHhccc
Q 004453 431 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYE 510 (753)
Q Consensus 431 ~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~~y~ 510 (753)
......+|+ +++..+..|+.+++ .+..+.||.|.| +.+++++|+.+|.. ++ + +++.+ +.|.
T Consensus 73 ~~~~~g~iv-~s~~~~~~R~~~r~---~~~~~~~v~l~a-~~~~l~~Rl~~R~~---~~--~-~~~vl--------~~Q~ 133 (176)
T PRK09825 73 KKNETGFIV-CSSLKKQYRDILRK---SSPNVHFLWLDG-DYETILARMQRRAG---HF--M-PPDLL--------QSQF 133 (176)
T ss_pred hcCCCEEEE-EEecCHHHHHHHHh---hCCCEEEEEEeC-CHHHHHHHHhcccC---CC--C-CHHHH--------HHHH
Confidence 112333454 88998888887754 345677888888 46888889988853 22 3 55555 5566
Q ss_pred ccccCCCCC--ceEEEeec
Q 004453 511 KVYEPVDEG--SYIKMIDM 527 (753)
Q Consensus 511 ~~yEpl~e~--~yik~i~~ 527 (753)
+.|||.+.. . +..+|.
T Consensus 134 ~~~e~~~~~e~~-~~~~d~ 151 (176)
T PRK09825 134 DALERPCADEHD-IARIDV 151 (176)
T ss_pred HHcCCCCCCcCC-eEEEEC
Confidence 667776533 4 444565
No 92
>PRK14527 adenylate kinase; Provisional
Probab=98.78 E-value=2.5e-08 Score=100.58 Aligned_cols=157 Identities=15% Similarity=0.188 Sum_probs=88.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHH-------HHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALA 422 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~-------~~vA~~~ 422 (753)
.+.+|+++|.|||||||+|+.|+++++...+++ |++-+........ ........+ .++...+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~-----gd~~r~~~~~~~~------~~~~~~~~~~~g~~~p~~~~~~l 73 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLST-----GDILRDHVARGTE------LGQRAKPIMEAGDLVPDELILAL 73 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc-----cHHHHHHHhcCcH------HHHHHHHHHHcCCCCcHHHHHHH
Confidence 577999999999999999999999988766544 3332212111000 000000000 0111111
Q ss_pred HHHHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHH-HcCCceEE-EEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 004453 423 MEDMISWMHE-GGQVGIFDATNSSRKRRNMLMKM-AEGNCKII-FLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGL 499 (753)
Q Consensus 423 l~d~~~~l~~-~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vi-fIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al 499 (753)
+. +.+.+ .+..+|+|+...+..+++.+..+ ...+..+. ++.+.|+ ++++.+|+..|... .... ++-.
T Consensus 74 ~~---~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~-~~~~~~Rl~~R~~~-~~r~-----dd~~ 143 (191)
T PRK14527 74 IR---DELAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVP-DEELIRRIVERARQ-EGRS-----DDNE 143 (191)
T ss_pred HH---HHHhcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcCccc-CCCC-----CCCH
Confidence 11 12222 24569999877778888878776 44444442 3555675 56677777766432 1111 2224
Q ss_pred HHHHHHHhcccccccCCCC----CceEEEeec
Q 004453 500 QDFKNRLANYEKVYEPVDE----GSYIKMIDM 527 (753)
Q Consensus 500 ~df~~Ri~~y~~~yEpl~e----~~yik~i~~ 527 (753)
+-+.+|++.|.+..+|+-. ..-++.||.
T Consensus 144 ~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~ 175 (191)
T PRK14527 144 ETVRRRQQVYREQTQPLVDYYEARGHLKRVDG 175 (191)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhcCCEEEEEC
Confidence 5577888888887777642 234555665
No 93
>PRK13946 shikimate kinase; Provisional
Probab=98.71 E-value=5.5e-08 Score=97.71 Aligned_cols=138 Identities=17% Similarity=0.236 Sum_probs=79.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~ 429 (753)
.+..|+++|+|||||||+|+.|++.|++..+++|. +.+...|.... .++....+..++..+. .++..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~-----~~~~~~g~~~~-e~~~~~ge~~~~~~e~-------~~l~~ 75 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT-----EIERAARMTIA-EIFAAYGEPEFRDLER-------RVIAR 75 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH-----HHHHHhCCCHH-HHHHHHCHHHHHHHHH-------HHHHH
Confidence 45689999999999999999999999876655553 35544443221 3333344444433321 22222
Q ss_pred HhcCCeEEEEeC--CCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHH-HHHHHHH
Q 004453 430 MHEGGQVGIFDA--TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGL-QDFKNRL 506 (753)
Q Consensus 430 l~~~G~vVIlDA--Tn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al-~df~~Ri 506 (753)
+.+.+..||... ++..++.|+.+.. .+ .++|++ + +.+++.+|+.++. ..|..++. ++.+.+ +.+.+|-
T Consensus 76 l~~~~~~Vi~~ggg~~~~~~~r~~l~~---~~-~~v~L~--a-~~e~~~~Rl~~r~-~rp~~~~~-~~~~~i~~~~~~R~ 146 (184)
T PRK13946 76 LLKGGPLVLATGGGAFMNEETRAAIAE---KG-ISVWLK--A-DLDVLWERVSRRD-TRPLLRTA-DPKETLARLMEERY 146 (184)
T ss_pred HHhcCCeEEECCCCCcCCHHHHHHHHc---CC-EEEEEE--C-CHHHHHHHhcCCC-CCCcCCCC-ChHHHHHHHHHHHH
Confidence 333556666553 5667777777764 33 345554 5 5677778887663 34544433 333333 3444555
Q ss_pred hcc
Q 004453 507 ANY 509 (753)
Q Consensus 507 ~~y 509 (753)
+.|
T Consensus 147 ~~y 149 (184)
T PRK13946 147 PVY 149 (184)
T ss_pred HHH
Confidence 544
No 94
>PRK13947 shikimate kinase; Provisional
Probab=98.68 E-value=8.1e-08 Score=94.51 Aligned_cols=136 Identities=19% Similarity=0.193 Sum_probs=74.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~~ 432 (753)
-|+++|+|||||||+|+.|++.|++..+++ |.+.+...|... ..++....+..++..+..+.. .+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~-----d~~~~~~~g~~~-~~~~~~~ge~~~~~~e~~~~~-------~l~~ 69 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDT-----DKEIEKMTGMTV-AEIFEKDGEVRFRSEEKLLVK-------KLAR 69 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEC-----chhhhhhcCCcH-HHHHHHhChHHHHHHHHHHHH-------HHhh
Confidence 389999999999999999999998765444 444554544322 234444555555544442222 2222
Q ss_pred CCeEEEEeCC--CCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHhcc
Q 004453 433 GGQVGIFDAT--NSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 509 (753)
Q Consensus 433 ~G~vVIlDAT--n~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~~y 509 (753)
.+..||.... -...+.+ ..+.+.+ .++|+. | +.+.+.+|+..+. ..|........+...+.+.+|-+.|
T Consensus 70 ~~~~vi~~g~g~vl~~~~~---~~l~~~~-~vv~L~--~-~~~~l~~Rl~~r~-~rp~~~~~~~~~~i~~~~~~r~~~y 140 (171)
T PRK13947 70 LKNLVIATGGGVVLNPENV---VQLRKNG-VVICLK--A-RPEVILRRVGKKK-SRPLLMVGDPEERIKELLKEREPFY 140 (171)
T ss_pred cCCeEEECCCCCcCCHHHH---HHHHhCC-EEEEEE--C-CHHHHHHHhcCCC-CCCCCCCCChHHHHHHHHHHHHHHH
Confidence 3444442221 1233333 3334444 355654 4 6777888887653 3555433312344445555665554
No 95
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.62 E-value=2.1e-07 Score=92.67 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=79.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l 430 (753)
+..|+++|+||+||||+|+.|++.|++. .++.|..++...|.. ...+|....+..++.++. .+++ .+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~-----~vd~D~~i~~~~g~~-i~~~~~~~g~~~fr~~e~---~~l~----~l 70 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNME-----FYDSDQEIEKRTGAD-IGWVFDVEGEEGFRDREE---KVIN----EL 70 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCc-----EEECCchHHHHhCcC-HhHHHHHhCHHHHHHHHH---HHHH----HH
Confidence 4579999999999999999999987654 355555566555532 223444556666665532 2222 23
Q ss_pred hcCCeEEEEeCCC---CCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHH-HHHHHHHH
Q 004453 431 HEGGQVGIFDATN---SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAG-LQDFKNRL 506 (753)
Q Consensus 431 ~~~G~vVIlDATn---~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~a-l~df~~Ri 506 (753)
...+.+|| .... .+++.|..+. +.+ .++|++ .+.+.+.+|+..+ ..+|...+. .+++. ...+.+|.
T Consensus 71 ~~~~~~vi-~~ggg~v~~~~~~~~l~---~~~-~vv~L~---~~~e~~~~Ri~~~-~~rP~~~~~-~~~~~~~~l~~~R~ 140 (172)
T PRK05057 71 TEKQGIVL-ATGGGSVKSRETRNRLS---ARG-VVVYLE---TTIEKQLARTQRD-KKRPLLQVD-DPREVLEALANERN 140 (172)
T ss_pred HhCCCEEE-EcCCchhCCHHHHHHHH---hCC-EEEEEe---CCHHHHHHHHhCC-CCCCCCCCC-CHHHHHHHHHHHHH
Confidence 32344444 3322 2344444333 344 577876 3556666777654 346877655 44433 34455666
Q ss_pred hcccc
Q 004453 507 ANYEK 511 (753)
Q Consensus 507 ~~y~~ 511 (753)
+.|++
T Consensus 141 ~~Y~~ 145 (172)
T PRK05057 141 PLYEE 145 (172)
T ss_pred HHHHh
Confidence 66543
No 96
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.61 E-value=8.9e-08 Score=111.60 Aligned_cols=144 Identities=15% Similarity=0.172 Sum_probs=95.2
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~ 428 (753)
.+...|+|+|+|||||||+++.|++.|++..+++|. +-....|.. ..++|....++.++.++..+...+.
T Consensus 4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~-----~ie~~~g~s-i~eif~~~Ge~~FR~~E~~~l~~~~---- 73 (542)
T PRK14021 4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV-----EIEREIGMS-IPSYFEEYGEPAFREVEADVVADML---- 73 (542)
T ss_pred CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH-----HHHHHHCcC-HHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 345689999999999999999999999887655544 344344432 3457777788888877755443221
Q ss_pred HHhcCCeEEEEeC---CCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 004453 429 WMHEGGQVGIFDA---TNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 504 (753)
Q Consensus 429 ~l~~~G~vVIlDA---Tn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~ 504 (753)
. ....|| .. +-..++.|+.+.++ ++++ .++|+. .+.+.+.+|+... ..+|.+.+. ..+...+.|.+
T Consensus 74 --~-~~~~VI-s~GGG~v~~~~n~~~L~~~~~~~g-~vv~L~---~~~~~l~~Rl~~~-~~RPll~~~-~~~~~~~l~~~ 143 (542)
T PRK14021 74 --E-DFDGIF-SLGGGAPMTPSTQHALASYIAHGG-RVVYLD---ADPKEAMERANRG-GGRPMLNGD-ANKRWKKLFKQ 143 (542)
T ss_pred --h-cCCeEE-ECCCchhCCHHHHHHHHHHHhcCC-EEEEEE---CCHHHHHHHHhCC-CCCCCCCCC-cHHHHHHHHHH
Confidence 1 222333 32 23356677777766 4444 677886 3567777778654 457777554 45667777888
Q ss_pred HHhccccc
Q 004453 505 RLANYEKV 512 (753)
Q Consensus 505 Ri~~y~~~ 512 (753)
|.+.|++.
T Consensus 144 R~~~Y~~~ 151 (542)
T PRK14021 144 RDPVFRQV 151 (542)
T ss_pred HHHHHHhh
Confidence 89988764
No 97
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.60 E-value=2.4e-07 Score=90.65 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=33.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCC
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGV 397 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~ 397 (753)
.+.+|+|+|+|||||||+|+.|++.|++. .++.|.+.+...|.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~-----~~d~d~~~~~~~g~ 45 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYD-----FIDTDHLIEARAGK 45 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHcCC
Confidence 46799999999999999999999998654 35666666655443
No 98
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.59 E-value=4.2e-07 Score=90.94 Aligned_cols=118 Identities=20% Similarity=0.244 Sum_probs=68.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcC-CC-CCCCC-CCCC---CHH----HHHHHHHHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG-VN-QSADF-FRAD---NPE----GMEARNEVAAL 421 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g-~~-~~~~~-~~~~---~~~----~~~~~~~vA~~ 421 (753)
.+|+|.|-|.|||||||++|+..+. ..--.|..|.+++.+.. .. ...++ +..+ ... .+..+...++.
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~---~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa 78 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLP---EPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAA 78 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSS---S-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCc---CCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999875 23345777777774321 11 11122 1111 112 23333333333
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHH-HHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHh
Q 004453 422 AMEDMISWMHEGGQVGIFDATNSSRKR-RNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (753)
Q Consensus 422 ~l~d~~~~l~~~G~vVIlDATn~~~~~-R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r 482 (753)
+.+.|..||+|........ .+.++++.. +++++||.+.|+.+ ++++|-+.|
T Consensus 79 --------~a~aG~~VIvD~v~~~~~~l~d~l~~~L~-~~~vl~VgV~Cple-il~~RE~~R 130 (174)
T PF07931_consen 79 --------MARAGNNVIVDDVFLGPRWLQDCLRRLLA-GLPVLFVGVRCPLE-ILERRERAR 130 (174)
T ss_dssp --------HHHTT-EEEEEE--TTTHHHHHHHHHHHT-TS-EEEEEEE--HH-HHHHHHHHH
T ss_pred --------HHhCCCCEEEecCccCcHHHHHHHHHHhC-CCceEEEEEECCHH-HHHHHHHhc
Confidence 4458999999999888775 677766542 68899999999755 666665444
No 99
>PRK12338 hypothetical protein; Provisional
Probab=98.57 E-value=5.1e-07 Score=98.06 Aligned_cols=127 Identities=15% Similarity=0.159 Sum_probs=86.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCC------------------C--C-
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRA------------------D--N- 408 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~------------------~--~- 408 (753)
+|.+|+++|.||+||||+|++|+++|++.. +...|-+|+.+.+..+.. +.+. . .
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~----~~~tD~~r~~~~~~~~~~-~~P~l~~ssy~a~~~l~~~~~~~~~~~ 77 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKH----LIETDFIREVVRGIIGKE-YAPALHKSSYNAYTALRDKENFKNNEE 77 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeE----EccChHHHHHHcCCCCcc-cCchhhcccHHHHhhcCCcccccchHH
Confidence 578999999999999999999999986532 334556688766532221 1000 0 0
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhh
Q 004453 409 --PEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (753)
Q Consensus 409 --~~~~~~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~ 484 (753)
-++|+...+++...++.+++.+.+.|..+|+++....+......... ....+.|+-.+ +|++..++|...|..
T Consensus 78 ~i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~~--~~~~v~~~vl~-~dee~h~~Rf~~R~~ 152 (319)
T PRK12338 78 LICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQFE--ENASIHFFILS-ADEEVHKERFVKRAM 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhhc--ccCceEEEEEE-CCHHHHHHHHHHhhh
Confidence 12355556666667777777766789999999999999776642221 22245455545 789999999988764
No 100
>PLN02200 adenylate kinase family protein
Probab=98.53 E-value=7.9e-08 Score=100.55 Aligned_cols=154 Identities=15% Similarity=0.229 Sum_probs=85.8
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCCCCCCCCCCHHHHHHH-------HHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAA 420 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~~~~~~~~~~~~~~~~-------~~vA~ 420 (753)
..|.+|+++|.|||||||+|+.|+++++.. +++.|++ |+...+... ........+ .++..
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~-----his~gdllR~~i~~~s~-------~~~~i~~~~~~G~~vp~e~~~ 108 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFK-----HLSAGDLLRREIASNSE-------HGAMILNTIKEGKIVPSEVTV 108 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCe-----EEEccHHHHHHHhccCh-------hHHHHHHHHHcCCCCcHHHHH
Confidence 457899999999999999999999987543 4666655 443221100 000000000 01111
Q ss_pred HHHHHHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 004453 421 LAMEDMISWMHE-GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGL 499 (753)
Q Consensus 421 ~~l~d~~~~l~~-~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al 499 (753)
..+. +.+.. .+..+|+|+...+.+++..+..+...... ++|.+.|+ ++++.+|+..|...+. ++..
T Consensus 109 ~~l~---~~l~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd-~vi~Ld~~-~e~~~~Rl~~R~~~r~--------dd~~ 175 (234)
T PLN02200 109 KLIQ---KEMESSDNNKFLIDGFPRTEENRIAFERIIGAEPN-VVLFFDCP-EEEMVKRVLNRNQGRV--------DDNI 175 (234)
T ss_pred HHHH---HHHhcCCCCeEEecCCcccHHHHHHHHHHhccCCC-EEEEEECC-HHHHHHHHHcCcCCCC--------CCCH
Confidence 1111 11211 24568999988888888777766432222 24445675 4556666666533222 2234
Q ss_pred HHHHHHHhcccccccCCCC----CceEEEeec
Q 004453 500 QDFKNRLANYEKVYEPVDE----GSYIKMIDM 527 (753)
Q Consensus 500 ~df~~Ri~~y~~~yEpl~e----~~yik~i~~ 527 (753)
+.+.+|++.|.+..+|+-+ ..-+..||.
T Consensus 176 e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa 207 (234)
T PLN02200 176 DTIKKRLKVFNALNLPVIDYYSKKGKLYTINA 207 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 5567888888888777542 133455565
No 101
>PRK01184 hypothetical protein; Provisional
Probab=98.50 E-value=1.8e-06 Score=86.30 Aligned_cols=139 Identities=14% Similarity=0.176 Sum_probs=71.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc-chhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG-KYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM-ISW 429 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d-~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~-~~~ 429 (753)
++|+|+|+|||||||+|+ +++.++ ..+++.| -+|+....... ........+...+.+.++......++ ...
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g-----~~~i~~~d~lr~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 74 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMG-----IPVVVMGDVIREEVKKRGL-EPTDENIGKVAIDLRKELGMDAVAKRTVPK 74 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcC-----CcEEEhhHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 489999999999999997 555543 2346654 45665422111 11111112222222222221222111 223
Q ss_pred Hh-cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHhc
Q 004453 430 MH-EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLAN 508 (753)
Q Consensus 430 l~-~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~~ 508 (753)
+. ..+..+|+|+. .....++.+++..... +..|.+.|+ .+...+|+..|.. ++ +.. ..+++.+|++.
T Consensus 75 i~~~~~~~vvidg~-r~~~e~~~~~~~~~~~--~~~i~v~~~-~~~~~~Rl~~R~~--~~-----d~~-~~~~~~~r~~~ 142 (184)
T PRK01184 75 IREKGDEVVVIDGV-RGDAEVEYFRKEFPED--FILIAIHAP-PEVRFERLKKRGR--SD-----DPK-SWEELEERDER 142 (184)
T ss_pred HHhcCCCcEEEeCC-CCHHHHHHHHHhCCcc--cEEEEEECC-HHHHHHHHHHcCC--CC-----Chh-hHHHHHHHHHH
Confidence 33 34789999998 4666666776654322 344555675 4555566655532 21 111 14566777765
Q ss_pred c
Q 004453 509 Y 509 (753)
Q Consensus 509 y 509 (753)
+
T Consensus 143 q 143 (184)
T PRK01184 143 E 143 (184)
T ss_pred H
Confidence 4
No 102
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=4.5e-07 Score=87.42 Aligned_cols=140 Identities=16% Similarity=0.221 Sum_probs=92.2
Q ss_pred ccCCCCHHHHHHHHHHHHhhcCCceEEEec-cchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeE
Q 004453 358 GLPARGKTFTAAKLTRYLRWLGHDTKHFNV-GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQV 436 (753)
Q Consensus 358 GLPGSGKSTlAr~L~r~L~~~gi~t~v~n~-d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~~~G~v 436 (753)
|.+||||||++.+|++.|++..++-|-|+. .++.|+..|.. ..++++.--.+.+...+....+ .|..
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiP----L~DdDR~pWL~~l~~~~~~~~~--------~~~~ 69 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIP----LNDDDRWPWLEALGDAAASLAQ--------KNKH 69 (161)
T ss_pred CCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCC----CCcchhhHHHHHHHHHHHHhhc--------CCCc
Confidence 889999999999999999998888887776 35555444422 3333444334444444443333 5678
Q ss_pred EEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHhcccccccCC
Q 004453 437 GIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKVYEPV 516 (753)
Q Consensus 437 VIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~~y~~~yEpl 516 (753)
+|+-+.-+++..|+.++.-.. ++.++|++ -+.+++.+|+..|+- -|- +... ++-|-+..|++
T Consensus 70 ~vi~CSALKr~YRD~LR~~~~-~~~Fv~L~---g~~~~i~~Rm~~R~g---HFM----~~~l-------l~SQfa~LE~P 131 (161)
T COG3265 70 VVIACSALKRSYRDLLREANP-GLRFVYLD---GDFDLILERMKARKG---HFM----PASL-------LDSQFATLEEP 131 (161)
T ss_pred eEEecHHHHHHHHHHHhccCC-CeEEEEec---CCHHHHHHHHHhccc---CCC----CHHH-------HHHHHHHhcCC
Confidence 899999999999999998743 25666665 478899999988753 121 2222 23333344555
Q ss_pred CCCceEEEeec
Q 004453 517 DEGSYIKMIDM 527 (753)
Q Consensus 517 ~e~~yik~i~~ 527 (753)
+.+..+..||+
T Consensus 132 ~~de~vi~idi 142 (161)
T COG3265 132 GADEDVLTIDI 142 (161)
T ss_pred CCCCCEEEeeC
Confidence 44467888887
No 103
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.49 E-value=4.1e-07 Score=90.43 Aligned_cols=140 Identities=18% Similarity=0.227 Sum_probs=70.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCC----------CCCCCCCCCHHHHHHHHHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQ----------SADFFRADNPEGMEARNEVAA 420 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~----------~~~~~~~~~~~~~~~~~~vA~ 420 (753)
.+|+++|.|||||||+|+.|+++++.. .++.|++ |+...+... ...+.+ ....++.+.+.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 76 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFT-----HLSTGDLLRAEVASGSERGKQLQAIMESGDLVP--LDTVLDLLKDAMV 76 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCc-----EEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHH
Confidence 388899999999999999999987543 3555543 332211000 000100 1111111111111
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 004453 421 LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (753)
Q Consensus 421 ~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~ 500 (753)
.. ...|..+|+|+...+..+...+... .....++|.+.|+ ++.+.+|+..|... .+.. +.-..
T Consensus 77 ~~--------~~~~~~~i~dg~~~~~~q~~~~~~~--~~~~~~vi~l~~~-~~~~~~Rl~~R~~~-~~r~-----d~~~~ 139 (188)
T TIGR01360 77 AA--------LGTSKGFLIDGYPREVKQGEEFERR--IGPPTLVLYFDCS-EDTMVKRLLKRAET-SGRV-----DDNEK 139 (188)
T ss_pred cc--------cCcCCeEEEeCCCCCHHHHHHHHHc--CCCCCEEEEEECC-HHHHHHHHHccccc-CCCC-----CCCHH
Confidence 11 1257889999987655444433322 1222334455675 56666677665421 1212 22234
Q ss_pred HHHHHHhcccccccC
Q 004453 501 DFKNRLANYEKVYEP 515 (753)
Q Consensus 501 df~~Ri~~y~~~yEp 515 (753)
.+.+|++.|...-.|
T Consensus 140 ~~~~r~~~~~~~~~~ 154 (188)
T TIGR01360 140 TIKKRLETYYKATEP 154 (188)
T ss_pred HHHHHHHHHHHhhHH
Confidence 566677665443333
No 104
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.45 E-value=1.5e-06 Score=87.02 Aligned_cols=151 Identities=17% Similarity=0.189 Sum_probs=81.7
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCCCCCCCCCCHHHHHHHH---HHHH-HHHHHHHH
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN---EVAA-LAMEDMIS 428 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~~~~~~~~~~~~~~~~~---~vA~-~~l~d~~~ 428 (753)
|+++|.|||||||+|+.|++.++. .+++.|++ |+...... +.......... .+-. ....-+..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~-----~~i~~~~l~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~l~~~ 69 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGL-----PHISTGDLLREEIASGT-------ELGKKAKEYIDSGKLVPDEIVIKLLKE 69 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC-----eEEECcHHHHHHHhcCC-------hHHHHHHHHHHcCCccCHHHHHHHHHH
Confidence 799999999999999999998653 34666654 33221100 00000000000 0000 01111112
Q ss_pred HHhc--CCeEEEEeCCCCCHHHHHHHHHHHc-CCceEEEEEEEeCcHHHHHHHHHHhhhcCC---CCC-----------C
Q 004453 429 WMHE--GGQVGIFDATNSSRKRRNMLMKMAE-GNCKIIFLETICNDRDIIERNIRLKIQQSP---DYA-----------E 491 (753)
Q Consensus 429 ~l~~--~G~vVIlDATn~~~~~R~~l~~l~~-~~~~vifIE~~c~d~~~i~rni~~r~~~~p---d~~-----------~ 491 (753)
.+.+ .+..+|+|+...+..+.+.+.+... .....++|.+.|+ ++++.+|+..|..... .|. .
T Consensus 70 ~l~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~ 148 (194)
T cd01428 70 RLKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVP-DEVLIERILGRRICPVSGRVYHLGKDDVTGEPLS 148 (194)
T ss_pred HHhcccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccc
Confidence 2332 2567889998777777777777632 2234445556675 5666666766643210 010 0
Q ss_pred CCChHHHHHHHHHHHhcccccccCCCC
Q 004453 492 EPDFEAGLQDFKNRLANYEKVYEPVDE 518 (753)
Q Consensus 492 ~~d~e~al~df~~Ri~~y~~~yEpl~e 518 (753)
. ..++..+.+.+|+..|+...+|+-+
T Consensus 149 ~-r~dd~~~~i~~R~~~y~~~~~~i~~ 174 (194)
T cd01428 149 Q-RSDDNEETIKKRLEVYKEQTAPLID 174 (194)
T ss_pred c-CCCCCHHHHHHHHHHHHHhHHHHHH
Confidence 0 1223346688899999888887753
No 105
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.44 E-value=9.9e-07 Score=90.69 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=81.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCCCCCCCCCCHHHHHHHHH---HHH-HHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARNE---VAA-LAMEDMI 427 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~~~~~~~~~~~~~~~~~~---vA~-~~l~d~~ 427 (753)
-|+++|.|||||||+|+.|++++++.. ++.++. |+....... ...+....+.+ +-. ....-+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~-----is~~dl~r~~~~~~~~-------~~~~~~~~~~~g~~~p~~~~~~~i~ 69 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPH-----ISTGDMLRAAVKAGTE-------LGKEAKSYMDAGELVPDEIVIGLVK 69 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE-----EECCccHHHHHhccch-------HHHHHHHHHHcCCcCCHHHHHHHHH
Confidence 488999999999999999999987655 444333 443221100 00000000000 000 0111111
Q ss_pred HHHhc--CCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCcHHHHHHHHHHhhhc-----------CCC----
Q 004453 428 SWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQ-----------SPD---- 488 (753)
Q Consensus 428 ~~l~~--~G~vVIlDATn~~~~~R~~l~~l-~~~~~~v-ifIE~~c~d~~~i~rni~~r~~~-----------~pd---- 488 (753)
+.+.+ .+..+|+|+...+..+...+.+. ...+..+ .+|.+.|+ ++++.+|+..|... +|.
T Consensus 70 ~~l~~~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~ 148 (215)
T PRK00279 70 ERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVP-DEELVERLSGRRICPACGRTYHVKFNPPKVEG 148 (215)
T ss_pred HHHhccCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHhCCcccCccCCcccccCCCCCCcC
Confidence 22322 23468999977777777777655 4444333 46666786 45666677666420 000
Q ss_pred --------CCCCCChHHHHHHHHHHHhcccccccCCC
Q 004453 489 --------YAEEPDFEAGLQDFKNRLANYEKVYEPVD 517 (753)
Q Consensus 489 --------~~~~~d~e~al~df~~Ri~~y~~~yEpl~ 517 (753)
... ..++..+.+.+|+..|++..+|+-
T Consensus 149 ~~~~~~~~l~~--r~dd~~~~i~~Rl~~y~~~~~~i~ 183 (215)
T PRK00279 149 KCDVCGEELIQ--RADDNEETVRKRLEVYHKQTAPLI 183 (215)
T ss_pred cCcCCCCcccC--CCCCCHHHHHHHHHHHHHhhHHHH
Confidence 000 123445667889999988877775
No 106
>PLN02199 shikimate kinase
Probab=98.44 E-value=6.6e-07 Score=95.98 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=82.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhh-cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK-HGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~-~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~ 429 (753)
...|+|+|+|||||||+++.|++.|++..+++|. +-+.. .|. ....+|....+..++.++..+...+.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~-----lIe~~~~G~-sI~eIf~~~GE~~FR~~E~e~L~~L~----- 170 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT-----LIEQAMNGT-SVAEIFVHHGENFFRGKETDALKKLS----- 170 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH-----HHHHHhcCC-CHHHHHHHhCHHHHHHHHHHHHHHHH-----
Confidence 3479999999999999999999998877655543 33333 232 33456777778777776654443332
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHh-hhcCCCCCCCCCh-------HHHHHH
Q 004453 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK-IQQSPDYAEEPDF-------EAGLQD 501 (753)
Q Consensus 430 l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r-~~~~pd~~~~~d~-------e~al~d 501 (753)
.....|| ........+.+.+..+. .| .++|+. + +.+.+.+|+... ...+|...+. +. +...+.
T Consensus 171 --~~~~~VI-StGGG~V~~~~n~~~L~-~G-~vV~Ld--a-s~E~l~~RL~~~~~~~RPLL~~~-~~d~~~~~~~~L~~L 241 (303)
T PLN02199 171 --SRYQVVV-STGGGAVIRPINWKYMH-KG-ISIWLD--V-PLEALAHRIAAVGTDSRPLLHDE-SGDAYSVAFKRLSAI 241 (303)
T ss_pred --hcCCEEE-ECCCcccCCHHHHHHHh-CC-eEEEEE--C-CHHHHHHHHhhcCCCCCCcCCCC-CcchhhhHHHHHHHH
Confidence 1233333 33332222222222233 34 577886 3 567788888752 2346766543 22 334456
Q ss_pred HHHHHhcccc
Q 004453 502 FKNRLANYEK 511 (753)
Q Consensus 502 f~~Ri~~y~~ 511 (753)
|.+|.+.|++
T Consensus 242 ~~~R~plY~~ 251 (303)
T PLN02199 242 WDERGEAYTN 251 (303)
T ss_pred HHHHHHHHHh
Confidence 6667776644
No 107
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.40 E-value=1e-06 Score=86.88 Aligned_cols=137 Identities=17% Similarity=0.250 Sum_probs=73.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~~ 432 (753)
.|+++|+|||||||+|+.|++.|++.. ++.|.+.....|..... ++.....+.++.++.-+... +.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~-----~d~D~~~~~~~g~~~~~-~~~~~g~~~~~~~e~~~~~~-------~~- 69 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRF-----VDTDQWLQSTSNMTVAE-IVEREGWAGFRARESAALEA-------VT- 69 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE-----EEccHHHHHHhCCCHHH-HHHHHCHHHHHHHHHHHHHH-------hc-
Confidence 478899999999999999999987654 55555555554433222 33333444454444322221 22
Q ss_pred CCeEEEEeCCC--CCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhh--cCCCCCCCCCh-HHHHHHHHHHHh
Q 004453 433 GGQVGIFDATN--SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ--QSPDYAEEPDF-EAGLQDFKNRLA 507 (753)
Q Consensus 433 ~G~vVIlDATn--~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~--~~pd~~~~~d~-e~al~df~~Ri~ 507 (753)
.+..||.-..+ .....|..+ .+.+ .++|++ + +.+++.+|+..+.. ..|...+. +. +...+-|.+|.+
T Consensus 70 ~~~~vi~~ggg~vl~~~~~~~l---~~~~-~~v~l~--~-~~~~~~~Rl~~r~~~~~rp~~~~~-~~~~~~~~~~~~r~~ 141 (171)
T PRK03731 70 APSTVIATGGGIILTEENRHFM---RNNG-IVIYLC--A-PVSVLANRLEANPEEDQRPTLTGK-PISEEVAEVLAEREA 141 (171)
T ss_pred CCCeEEECCCCccCCHHHHHHH---HhCC-EEEEEE--C-CHHHHHHHHccccccccCCcCCCC-ChHHHHHHHHHHHHH
Confidence 34444432222 233444444 3344 355665 3 67777788876532 23444333 33 333344555666
Q ss_pred cccc
Q 004453 508 NYEK 511 (753)
Q Consensus 508 ~y~~ 511 (753)
.|.+
T Consensus 142 ~y~~ 145 (171)
T PRK03731 142 LYRE 145 (171)
T ss_pred HHHH
Confidence 6644
No 108
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.38 E-value=2.2e-06 Score=83.20 Aligned_cols=121 Identities=15% Similarity=0.207 Sum_probs=82.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc-chhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG-KYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d-~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~ 428 (753)
-|.+|++.|.+||||||++++|...|++..++.|-|+.- +.+++..|.. .-++++---....+..++..+.
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~Gip----LnD~DR~pWL~~i~~~~~~~l~---- 82 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIP----LNDDDRWPWLKKIAVELRKALA---- 82 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCC----CCcccccHHHHHHHHHHHHHhh----
Confidence 467999999999999999999999999988877776664 4444444432 2223333334444444444443
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-H-----c-CCceEEEEEEEeCcHHHHHHHHHHhh
Q 004453 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-A-----E-GNCKIIFLETICNDRDIIERNIRLKI 483 (753)
Q Consensus 429 ~l~~~G~vVIlDATn~~~~~R~~l~~l-~-----~-~~~~vifIE~~c~d~~~i~rni~~r~ 483 (753)
.|+-||+.+..+.+..|+.++.- . . ...++.||.... ..++|..|+..|+
T Consensus 83 ----~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~Rl~~R~ 139 (191)
T KOG3354|consen 83 ----SGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKRLKKRK 139 (191)
T ss_pred ----cCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeec-cHHHHHHHHhhcc
Confidence 79999999999999999999984 1 1 124555665555 4577777776664
No 109
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.37 E-value=1.6e-06 Score=94.42 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=78.3
Q ss_pred CCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 004453 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (753)
Q Consensus 346 ~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d 425 (753)
++-..+..|+++|+|||||||+|+.|++.|++..+ +.|.+++...|.... .++....+..++..+.-+ +..
T Consensus 128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i-----d~D~~i~~~~G~~i~-ei~~~~G~~~fr~~e~~~---l~~ 198 (309)
T PRK08154 128 RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFV-----ELNREIEREAGLSVS-EIFALYGQEGYRRLERRA---LER 198 (309)
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE-----eHHHHHHHHhCCCHH-HHHHHHCHHHHHHHHHHH---HHH
Confidence 33456779999999999999999999999876543 555556555554322 223223444444332211 111
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004453 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 505 (753)
Q Consensus 426 ~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~R 505 (753)
.+.+.+.+||..+.+. ...-..+..+... +.++|| .| +.+.+.+|+..+...+|...+....+...+.+.+|
T Consensus 199 ---ll~~~~~~VI~~Ggg~-v~~~~~~~~l~~~-~~~V~L--~a-~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R 270 (309)
T PRK08154 199 ---LIAEHEEMVLATGGGI-VSEPATFDLLLSH-CYTVWL--KA-SPEEHMARVRAQGDLRPMADNREAMEDLRRILASR 270 (309)
T ss_pred ---HHhhCCCEEEECCCch-hCCHHHHHHHHhC-CEEEEE--EC-CHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHH
Confidence 1222445555444432 2211222223333 345555 45 56777777876544344332211345555556666
Q ss_pred Hhccc
Q 004453 506 LANYE 510 (753)
Q Consensus 506 i~~y~ 510 (753)
.+.|+
T Consensus 271 ~~~y~ 275 (309)
T PRK08154 271 EPLYA 275 (309)
T ss_pred HHHHH
Confidence 66653
No 110
>PRK14530 adenylate kinase; Provisional
Probab=98.30 E-value=6e-06 Score=84.88 Aligned_cols=149 Identities=17% Similarity=0.239 Sum_probs=78.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCH-HHHHHH-----HHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNP-EGMEAR-----NEVAALAMEDM 426 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~-~~~~~~-----~~vA~~~l~d~ 426 (753)
.|+++|.|||||||+|+.|++.++.. .++.|++-+...+.... ..+..... ..+-.. .++....+.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~-----~i~~g~~lr~~~~~~~~-~~~~~~~~~~~~~~~g~~~~d~~~~~~l~-- 76 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVE-----HVTTGDALRANKQMDIS-DMDTEYDTPGEYMDAGELVPDAVVNEIVE-- 76 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe-----EEeccHHHHHhccCCcc-cccchHHHHHHHHHcCCCCCHHHHHHHHH--
Confidence 58889999999999999999997543 45556554422221111 11111000 000000 011112121
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCC----C---------C---
Q 004453 427 ISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPD----Y---------A--- 490 (753)
Q Consensus 427 ~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd----~---------~--- 490 (753)
+.+. .....|+|+...+.++++.+..+...+ .++++ .|+ .+++.+|+..|... +. | .
T Consensus 77 -~~l~-~~~~~IldG~pr~~~q~~~l~~~~~~d-~vI~L--d~~-~~~l~~Rl~~R~~~-~~~g~~~~~~~~~p~~~~~~ 149 (215)
T PRK14530 77 -EALS-DADGFVLDGYPRNLEQAEYLESITDLD-VVLYL--DVS-EEELVDRLTGRRVC-PDCGANYHVEFNQPEEEGVC 149 (215)
T ss_pred -HHHh-cCCCEEEcCCCCCHHHHHHHHHhcCCC-EEEEE--eCC-HHHHHHHHhCCCcC-cccCCccccCCCCCcccccC
Confidence 1122 234578898666677766665553222 24444 464 56667777766421 11 0 0
Q ss_pred -------CCCChHHHHHHHHHHHhcccccccCCC
Q 004453 491 -------EEPDFEAGLQDFKNRLANYEKVYEPVD 517 (753)
Q Consensus 491 -------~~~d~e~al~df~~Ri~~y~~~yEpl~ 517 (753)
.. ..++..+.+.+|+..|.+.-+|+-
T Consensus 150 ~~~~~rl~~-R~dD~~e~i~~Rl~~y~~~~~~v~ 182 (215)
T PRK14530 150 DECGGELIQ-RDDDTEETVRERLDVFEENTEPVI 182 (215)
T ss_pred cccCCcccC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 123345668889999988777764
No 111
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.30 E-value=3.2e-06 Score=97.39 Aligned_cols=135 Identities=18% Similarity=0.240 Sum_probs=80.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~~ 432 (753)
-|+++|+|||||||+|+.|++.|++.. ++.|++++...|... .++|....++.++.++..+...+ .+
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~-----id~D~~i~~~~g~~i-~~i~~~~Ge~~fr~~E~~~l~~l-------~~ 68 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQF-----IDMDEEIERREGRSV-RRIFEEDGEEYFRLKEKELLREL-------VE 68 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeE-----EECcHHHHHHcCCCH-HHHHHHhhhHHHHHHHHHHHHHH-------hh
Confidence 489999999999999999999987654 566666776655432 33455556666655443322222 11
Q ss_pred CCeEEEEeCCC---CCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHhcc
Q 004453 433 GGQVGIFDATN---SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 509 (753)
Q Consensus 433 ~G~vVIlDATn---~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~~y 509 (753)
....+| .+.. ...+.|+.+++ . .++|+. | +.+.+.+|+..+ .+|...+. .+...+.|.+|.+.|
T Consensus 69 ~~~~Vi-s~Gggvv~~~~~r~~l~~---~--~vI~L~--a-s~e~l~~Rl~~~--~RPLl~~~--~e~l~~L~~~R~~lY 135 (488)
T PRK13951 69 RDNVVV-ATGGGVVIDPENRELLKK---E--KTLFLY--A-PPEVLMERVTTE--NRPLLREG--KERIREIWERRKQFY 135 (488)
T ss_pred cCCEEE-ECCCccccChHHHHHHhc---C--eEEEEE--C-CHHHHHHHhccC--CCCCcccc--HHHHHHHHHHHHHHH
Confidence 223333 3221 23345555542 2 355654 4 567888888654 35655432 355667778888888
Q ss_pred cccc
Q 004453 510 EKVY 513 (753)
Q Consensus 510 ~~~y 513 (753)
++.+
T Consensus 136 ~~~~ 139 (488)
T PRK13951 136 TEFR 139 (488)
T ss_pred hccc
Confidence 7643
No 112
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.29 E-value=6.6e-07 Score=91.67 Aligned_cols=147 Identities=15% Similarity=0.166 Sum_probs=79.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCCCCCCCCCCHHHHHHH-------HHHHHHHHHH
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMED 425 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~~~~~~~~~~~~~~~~-------~~vA~~~l~d 425 (753)
|+++|.|||||||+|+.|+++++... ++.|++ |+....... + .......+ .++....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~-----is~gdllr~~~~~~~~---~----~~~~~~~~~~g~~vp~~~~~~l--- 66 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPH-----ISTGDLLRAEIKAGTP---L----GKKAKEYMEKGELVPDEIVNQL--- 66 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCe-----eehhHHHHHhhccccH---H----HHHHHHHHhCCCCCCHHHHHHH---
Confidence 78899999999999999999876443 555444 442211000 0 00000000 0111111
Q ss_pred HHHHHhc---CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhc------------CC---
Q 004453 426 MISWMHE---GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ------------SP--- 487 (753)
Q Consensus 426 ~~~~l~~---~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~------------~p--- 487 (753)
+.+.+.+ .+..+|+|+...+..+.+.+.+..... ...+|.+.|+ ++++.+|+..|... .|
T Consensus 67 ~~~~i~~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~-~~~vi~L~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~ 144 (210)
T TIGR01351 67 VKERLTQNQDNENGFILDGFPRTLSQAEALDALLKEK-IDAVIELDVP-DEELVERLSGRRICPSCGRVYHLKFNPPKVP 144 (210)
T ss_pred HHHHHhcCcccCCcEEEeCCCCCHHHHHHHHHHhccC-CCEEEEEECC-HHHHHHHHHCCCccCCcCCccccccCCCccC
Confidence 2223332 256799999777777777777664311 1234555675 56666777766410 00
Q ss_pred C---CCC----CCChHHHHHHHHHHHhcccccccCCCC
Q 004453 488 D---YAE----EPDFEAGLQDFKNRLANYEKVYEPVDE 518 (753)
Q Consensus 488 d---~~~----~~d~e~al~df~~Ri~~y~~~yEpl~e 518 (753)
. ..+ . ..++-.+-+.+|++.|++...|+-+
T Consensus 145 ~~~~~~~~~l~~-R~dD~~e~i~~Rl~~y~~~~~~v~~ 181 (210)
T TIGR01351 145 GCDDCTGELLIQ-REDDTEEVVKKRLEVYKEQTEPLID 181 (210)
T ss_pred CcCcccCCcccc-CCCCCHHHHHHHHHHHHHhhHHHHH
Confidence 0 000 0 1223345678899999888777753
No 113
>PRK04040 adenylate kinase; Provisional
Probab=98.28 E-value=8.9e-06 Score=82.40 Aligned_cols=119 Identities=24% Similarity=0.232 Sum_probs=63.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhc---CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKH---GVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~---g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~ 427 (753)
+.+|+++|.|||||||+++.|++.|. ....+++.|++.+... |.....+-...........++..|...+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~---~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~--- 75 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK---EDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIA--- 75 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc---cCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHH---
Confidence 57899999999999999999999984 1344577777744322 11111010111122222233333333322
Q ss_pred HHHhcCCeEEEEeC--------CCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHH
Q 004453 428 SWMHEGGQVGIFDA--------TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 481 (753)
Q Consensus 428 ~~l~~~G~vVIlDA--------Tn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~ 481 (753)
.+ ..+..+|+|+ .++..-.+..+..+.. -.+++ +.|+++++++||++.
T Consensus 76 -~~-~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~p--d~ii~--l~a~p~~i~~Rrl~d 131 (188)
T PRK04040 76 -EM-AGEGPVIVDTHATIKTPAGYLPGLPEWVLEELNP--DVIVL--IEADPDEILMRRLRD 131 (188)
T ss_pred -Hh-hcCCCEEEeeeeeeccCCCCcCCCCHHHHhhcCC--CEEEE--EeCCHHHHHHHHhcc
Confidence 12 2356688898 3333223333444311 12333 456677788888754
No 114
>PRK06696 uridine kinase; Validated
Probab=98.25 E-value=7.1e-06 Score=84.96 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=38.2
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
..+|++|.+.|.|||||||+|++|++.|+..|....+++.|+|-
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 45799999999999999999999999998777777777777773
No 115
>PRK06217 hypothetical protein; Validated
Probab=98.23 E-value=8.2e-06 Score=81.79 Aligned_cols=129 Identities=19% Similarity=0.229 Sum_probs=68.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~~ 432 (753)
-|+++|.|||||||+|++|++.|+.. +++.|++..... ...+...... +.+...+...+ .
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-----~~~~D~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~-------~- 62 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-----HLDTDDYFWLPT----DPPFTTKRPP---EERLRLLLEDL-------R- 62 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-----EEEcCceeeccC----CCCccccCCH---HHHHHHHHHHH-------h-
Confidence 48999999999999999999997533 466665533111 1112111111 11122222222 2
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhc---CCCCCCCCChHHHHHHHHHHHhcc
Q 004453 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ---SPDYAEEPDFEAGLQDFKNRLANY 509 (753)
Q Consensus 433 ~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~---~pd~~~~~d~e~al~df~~Ri~~y 509 (753)
.+...|+|+.... .++.+. ...+ .++|++ | +.++..+|+..|... .|...+. +.+....+|.+++..|
T Consensus 63 ~~~~~vi~G~~~~--~~~~~~--~~~d-~~i~Ld--~-~~~~~~~Rl~~R~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~ 133 (183)
T PRK06217 63 PREGWVLSGSALG--WGDPLE--PLFD-LVVFLT--I-PPELRLERLRLREFQRYGNRILPGG-DMHKASLEFLEWAASY 133 (183)
T ss_pred cCCCEEEEccHHH--HHHHHH--hhCC-EEEEEE--C-CHHHHHHHHHcCcccccCcccCCCC-CHHHHHHHHHHHHHhc
Confidence 3455788854432 222222 2223 356765 4 566677777766421 2222333 4566667788777655
Q ss_pred c
Q 004453 510 E 510 (753)
Q Consensus 510 ~ 510 (753)
.
T Consensus 134 ~ 134 (183)
T PRK06217 134 D 134 (183)
T ss_pred c
Confidence 3
No 116
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.21 E-value=8.6e-07 Score=86.90 Aligned_cols=132 Identities=19% Similarity=0.199 Sum_probs=75.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEE
Q 004453 360 PARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIF 439 (753)
Q Consensus 360 PGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~~~G~vVIl 439 (753)
|||||||+++.|++.|+|..+++ |++-....|.. ...++....++.++..+.-+...+. ...+.++.+
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~-----D~~i~~~~g~s-i~~i~~~~G~~~fr~~E~~~l~~l~------~~~~~VIa~ 68 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDL-----DDEIEERTGMS-ISEIFAEEGEEAFRELESEALRELL------KENNCVIAC 68 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEH-----HHHHHHHHTSH-HHHHHHHHHHHHHHHHHHHHHHHHH------CSSSEEEEE
T ss_pred CCCcHHHHHHHHHHHhCCCcccc-----CHHHHHHhCCc-HHHHHHcCChHHHHHHHHHHHHHHh------ccCcEEEeC
Confidence 79999999999999999876554 44433344421 2234554555556555433333222 222333333
Q ss_pred eC-CCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCCh-HHHHHHHHHHHhccccc
Q 004453 440 DA-TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNRLANYEKV 512 (753)
Q Consensus 440 DA-Tn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~-e~al~df~~Ri~~y~~~ 512 (753)
.+ +-..++.|+.++ + ...++||. + +.+.+.+|+..+.. +|-+.+. .. +...+.+.+|...|++.
T Consensus 69 GGG~~~~~~~~~~L~---~-~g~vI~L~--~-~~~~l~~Rl~~~~~-Rp~l~~~-~~~~~~~~~~~~R~~~Y~~~ 134 (158)
T PF01202_consen 69 GGGIVLKEENRELLK---E-NGLVIYLD--A-DPEELAERLRARDN-RPLLKGK-MEHEEILELLFEREPLYEQA 134 (158)
T ss_dssp -TTGGGSHHHHHHHH---H-HSEEEEEE-----HHHHHHHHHHHCT-SGGTCSH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHH---h-CCEEEEEe--C-CHHHHHHHHhCCCC-CCCCCCC-ChHHHHHHHHHHHHHHHHhc
Confidence 22 233456666666 2 33678886 3 56778888877655 6777755 22 24556666788877554
No 117
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.18 E-value=5.9e-05 Score=81.52 Aligned_cols=131 Identities=13% Similarity=0.162 Sum_probs=83.3
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCC--------CCCC--C-----CCCCH----
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQ--------SADF--F-----RADNP---- 409 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~--------~~~~--~-----~~~~~---- 409 (753)
..|++|+++|.+||||||+|.+|+++|+. . .+++.|.+|+.+..... ...| . .+..+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~---~-~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l 165 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGI---R-SVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVI 165 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCC---C-EEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhh
Confidence 47899999999999999999999999853 3 36777777854321110 0011 0 01111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcC
Q 004453 410 EGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQS 486 (753)
Q Consensus 410 ~~~~~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~ 486 (753)
..|....+.....++.+++-..++|+.+|+-+....++..+... .++. .++.+-|...+++.+++|...|....
T Consensus 166 ~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~--~~~~-~~i~~~l~i~~ee~h~~RF~~R~~~~ 239 (301)
T PRK04220 166 YGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKY--LENP-NVFMFVLTLSDEEAHKARFYARARVS 239 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhh--hcCC-CEEEEEEEECCHHHHHHHHHHHHhhh
Confidence 12333333344446666666666899999999999998633311 2222 23444556679999999998887643
No 118
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.18 E-value=6.5e-06 Score=76.11 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=27.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
+|+++|.|||||||+|++|++.++ ..+++.|++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~-----~~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG-----FPVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-----CEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC-----CeEEEecce
Confidence 689999999999999999999874 345677775
No 119
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.15 E-value=1.6e-05 Score=79.80 Aligned_cols=151 Identities=14% Similarity=0.091 Sum_probs=83.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH------H
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED------M 426 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d------~ 426 (753)
+|.++|.|||||||+|+.|++.|...+.++.+++.|+|-+-........+.++....--+..+.+....+.+. .
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 5889999999999999999999998888999999999854210111111222221110112222222111110 0
Q ss_pred HHH----------H-hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHH-HHHHHHHHhhhcCCCCCCCCC
Q 004453 427 ISW----------M-HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRD-IIERNIRLKIQQSPDYAEEPD 494 (753)
Q Consensus 427 ~~~----------l-~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~-~i~rni~~r~~~~pd~~~~~d 494 (753)
++| . .+...++|+++.+.... .+.++. . -.+||+ ++.+. .+.||+.+-... .+. +
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~---~l~~~~--d-~~I~vd--~~~~~~rl~rri~RD~~~----rg~-~ 147 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNE---RLRSLL--D-IRVAVS--GGVHLNRLLRRVVRDIQF----RGY-S 147 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcCH---hHHhhc--C-EEEEEe--CCccHHHHHHHHHHhHHh----hCC-C
Confidence 000 0 01346899998887532 344442 2 234665 43333 466666554332 233 5
Q ss_pred hHHHHHHHHHHHhcccccccCCC
Q 004453 495 FEAGLQDFKNRLANYEKVYEPVD 517 (753)
Q Consensus 495 ~e~al~df~~Ri~~y~~~yEpl~ 517 (753)
.+..+.. ..+++.++..|+|.-
T Consensus 148 ~~~~i~~-~~~~~~~~~~~~~~~ 169 (179)
T cd02028 148 AELTILM-WPSVPSGEEFIIPPL 169 (179)
T ss_pred HHHHhhh-cccccCchhhcCCCc
Confidence 6666666 456777777776653
No 120
>PRK06761 hypothetical protein; Provisional
Probab=98.12 E-value=1.3e-05 Score=86.05 Aligned_cols=123 Identities=14% Similarity=0.097 Sum_probs=77.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~ 429 (753)
+.+|+++|+|||||||+++.|++.|...+++.+++..++. +..- ......+..++.....+.....++...+ ..
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d--~~~~~~~~~eer~~~l~~~~~f~~~l~~---~~ 77 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPAD--YDGVACFTKEEFDRLLSNYPDFKEVLLK---NV 77 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchh--hccccCCCHHHHHHHHHhhhHHHHHHHH---HH
Confidence 3589999999999999999999999988888887755433 2211 1122223222233333333343332222 11
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH--HcCCceEEEEEEEeCcHHHHHHHHHHhh
Q 004453 430 MHEGGQVGIFDATNSSRKRRNMLMKM--AEGNCKIIFLETICNDRDIIERNIRLKI 483 (753)
Q Consensus 430 l~~~G~vVIlDATn~~~~~R~~l~~l--~~~~~~vifIE~~c~d~~~i~rni~~r~ 483 (753)
+ ..|..+|+-..-.....|+.+..- ... .+.++. .+ +++.+++|+.+|.
T Consensus 78 ~-~~g~~~i~~~~~l~~~yr~~~~~~~~~~~--~v~~~h-~~-p~e~i~~R~~~rw 128 (282)
T PRK06761 78 L-KKGDYYLLPYRKIKNEFGDQFSDELFNDI--SKNDIY-EL-PFDKNTELITDRW 128 (282)
T ss_pred H-HcCCeEEEEehhhhHHHhhhhhhhhcccc--eeeeee-cC-CHHHHHHHHHHHH
Confidence 2 357888888888888888888852 222 344444 34 6888899887764
No 121
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.11 E-value=0.00011 Score=73.30 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=29.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
++|++.|.+||||||+++.|++.|...|.++..+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4799999999999999999999998777777555
No 122
>PRK14528 adenylate kinase; Provisional
Probab=98.11 E-value=1.5e-05 Score=80.37 Aligned_cols=146 Identities=16% Similarity=0.165 Sum_probs=76.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS-----ADFFRADNPEGMEARNEVAALAMEDM 426 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~-----~~~~~~~~~~~~~~~~~vA~~~l~d~ 426 (753)
-|++.|.|||||||+|+.|+++++.. +++.|++ |.... .... ..|...... .-..+.... +
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~-----~is~~~~lr~~~~-~~~~~g~~~~~~~~~g~l----vp~~~~~~~---~ 69 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIP-----QISTGDILREAVK-NQTAMGIEAKRYMDAGDL----VPDSVVIGI---I 69 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC-----eeeCCHHHHHHhh-cCCHHHHHHHHHHhCCCc----cCHHHHHHH---H
Confidence 47889999999999999999987533 3555655 33221 1100 000000000 000111111 1
Q ss_pred HHHHhc--CCeEEEEeCCCCCHHHHHHHHHH-HcCCc-eEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH
Q 004453 427 ISWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNC-KIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDF 502 (753)
Q Consensus 427 ~~~l~~--~G~vVIlDATn~~~~~R~~l~~l-~~~~~-~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df 502 (753)
.+.+.+ .....|+|.--.+.++-+.+.++ ...+. .-.+|.+.|+ ++++.+|+..|..... ..++..+-+
T Consensus 70 ~~~l~~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~-~~~~~~Rl~~R~~~~g------r~dd~~e~i 142 (186)
T PRK14528 70 KDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVP-DGELLKRLLGRAEIEG------RADDNEATI 142 (186)
T ss_pred HHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhcCccccC------CCCCCHHHH
Confidence 222322 23468889865566666666665 32221 2235555686 4556666665532111 112234457
Q ss_pred HHHHhcccccccCCCC
Q 004453 503 KNRLANYEKVYEPVDE 518 (753)
Q Consensus 503 ~~Ri~~y~~~yEpl~e 518 (753)
.+|+..|.+..+|+-+
T Consensus 143 ~~Rl~~y~~~~~pv~~ 158 (186)
T PRK14528 143 KNRLDNYNKKTLPLLD 158 (186)
T ss_pred HHHHHHHHHHhHHHHH
Confidence 8899999888888753
No 123
>PRK03839 putative kinase; Provisional
Probab=98.10 E-value=8.2e-06 Score=81.30 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=24.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcC
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLG 379 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~g 379 (753)
.|+++|+|||||||+|++|++.++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~ 28 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEY 28 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 589999999999999999999986543
No 124
>PRK08356 hypothetical protein; Provisional
Probab=98.06 E-value=0.00015 Score=73.44 Aligned_cols=120 Identities=18% Similarity=0.129 Sum_probs=61.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCCCCCCC-CC------CHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFR-AD------NPEGMEARNEVAAL 421 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~~~~~~-~~------~~~~~~~~~~vA~~ 421 (753)
..++|+++|.|||||||+|+.|++ .|+. +++.++. |+.. .......+|. +. ....+....+++..
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~----~g~~--~is~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~ 76 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE----KGFC--RVSCSDPLIDLL-THNVSDYSWVPEVPFKGEPTRENLIELGRYLKE 76 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH----CCCc--EEeCCCcccccc-cccccccccccHHHHhhccccccHHHHHHHHHH
Confidence 457899999999999999999963 3444 4555543 2211 1111112221 10 01111111222221
Q ss_pred ------HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhh
Q 004453 422 ------AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (753)
Q Consensus 422 ------~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~ 484 (753)
..+.+++.+.. +..+|+|+. .+...++.+... +..++||. |+ .+++.+|+..|..
T Consensus 77 ~yG~~~~~~~~~~~~~~-~~~ividG~-r~~~q~~~l~~~---~~~vi~l~--~~-~~~~~~Rl~~R~~ 137 (195)
T PRK08356 77 KYGEDILIRLAVDKKRN-CKNIAIDGV-RSRGEVEAIKRM---GGKVIYVE--AK-PEIRFERLRRRGA 137 (195)
T ss_pred hcCcHHHHHHHHHHhcc-CCeEEEcCc-CCHHHHHHHHhc---CCEEEEEE--CC-HHHHHHHHHhcCC
Confidence 00112222322 336888977 666666665543 23455554 64 5777888877644
No 125
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.05 E-value=9.8e-05 Score=82.48 Aligned_cols=45 Identities=36% Similarity=0.513 Sum_probs=41.6
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 393 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~ 393 (753)
..|.+|+|+||-||||||.|.+|++||...+.++-++..|-||-.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpA 142 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPA 142 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChH
Confidence 468999999999999999999999999999999999999988763
No 126
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.05 E-value=4.3e-05 Score=75.81 Aligned_cols=27 Identities=30% Similarity=0.227 Sum_probs=23.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
.+|+++|.+||||||+++.|++.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~ 28 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNL 28 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccc
Confidence 489999999999999999999876543
No 127
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.04 E-value=0.00013 Score=73.65 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=29.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEE
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v 384 (753)
+.+|++.|++||||||+++.|+++|...|..+.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~ 36 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVF 36 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence 5799999999999999999999999876655444
No 128
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.03 E-value=3.1e-05 Score=77.82 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=22.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.+|+++|.+||||||+++.|+..+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4789999999999999999988764
No 129
>PRK07667 uridine kinase; Provisional
Probab=98.02 E-value=7.2e-05 Score=75.84 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=38.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
.+++|.++|.|||||||+|+.|++.|+..|.++.+++.|+|
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 45899999999999999999999999988999999999986
No 130
>PRK07261 topology modulation protein; Provisional
Probab=98.02 E-value=1.5e-05 Score=79.46 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
-|+++|.|||||||+|++|++.++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~ 26 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNC 26 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 3889999999999999999988653
No 131
>PLN02674 adenylate kinase
Probab=98.01 E-value=2.4e-05 Score=82.44 Aligned_cols=151 Identities=19% Similarity=0.214 Sum_probs=82.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHH-------HHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAM 423 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~-------~~vA~~~l 423 (753)
+.-|++.|.|||||+|+|+.|++.+++.. ++.|++-|........ ......+.+ .++...++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~h-----is~GdllR~~i~~~s~------~g~~i~~~~~~G~lvpd~iv~~lv 99 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCH-----LATGDMLRAAVAAKTP------LGIKAKEAMDKGELVSDDLVVGII 99 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcE-----EchhHHHHHHHhccCh------hhHHHHHHHHcCCccCHHHHHHHH
Confidence 45688999999999999999999976544 5555443322111000 001000000 01111111
Q ss_pred HHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCcHHHHHHHHHHhhhc---C---------C
Q 004453 424 EDMISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQ---S---------P 487 (753)
Q Consensus 424 ~d~~~~l~--~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~v-ifIE~~c~d~~~i~rni~~r~~~---~---------p 487 (753)
. +.+. +.+..+|+|+.--+..+-+.+.++ ...++.+ .+|++.|+ ++++.+|+..|... . |
T Consensus 100 ~---~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~-~~~l~~Rl~gR~~~~~~g~~yn~~~~pp 175 (244)
T PLN02674 100 D---EAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAID-DAILEERITGRWIHPSSGRTYHTKFAPP 175 (244)
T ss_pred H---HHHhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhccccccccCCccccccCCC
Confidence 1 1222 235679999988888887777765 3333322 35555675 56666676665321 0 0
Q ss_pred CCCC----------CCChHHHHHHHHHHHhcccccccCCC
Q 004453 488 DYAE----------EPDFEAGLQDFKNRLANYEKVYEPVD 517 (753)
Q Consensus 488 d~~~----------~~d~e~al~df~~Ri~~y~~~yEpl~ 517 (753)
.-.+ . ..++..+-..+|++.|++.-+|+-
T Consensus 176 ~~~~~~~~~g~~L~~-R~DD~~e~i~~RL~~Y~~~t~pv~ 214 (244)
T PLN02674 176 KVPGVDDVTGEPLIQ-RKDDTAAVLKSRLEAFHKQTEPVI 214 (244)
T ss_pred cccCcccccCCcccc-CCCCCHHHHHHHHHHHHHHhHHHH
Confidence 0000 0 134445667889999988777765
No 132
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.00 E-value=3.2e-05 Score=78.41 Aligned_cols=27 Identities=33% Similarity=0.305 Sum_probs=24.2
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.+.+|+++|.+||||||+++.|++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 356899999999999999999999864
No 133
>PRK08233 hypothetical protein; Provisional
Probab=98.00 E-value=0.00013 Score=72.18 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=24.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
++++|++.|.|||||||+|++|++.|.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 358999999999999999999999875
No 134
>PRK02496 adk adenylate kinase; Provisional
Probab=97.98 E-value=2.5e-05 Score=78.04 Aligned_cols=138 Identities=16% Similarity=0.199 Sum_probs=72.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCCCCCCCCCCHHHHHHH-------HHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAME 424 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~~~~~~~~~~~~~~~~-------~~vA~~~l~ 424 (753)
-|+++|.|||||||+|+.|++.++.. +++.|++ |+....... ........+ .++....+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~-----~i~~~~~~~~~~~~~~~-------~g~~~~~~~~~g~~~~~~~~~~~l- 69 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIP-----HISTGDILRQAIKEQTP-------LGIKAQGYMDKGELVPDQLVLDLV- 69 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EEEhHHHHHHHHhccCh-------hHHHHHHHHHCCCccCHHHHHHHH-
Confidence 47889999999999999999987543 3444444 332211000 000000000 01111111
Q ss_pred HHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHH-HcCC-ceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 004453 425 DMISWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGN-CKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (753)
Q Consensus 425 d~~~~l~~--~G~vVIlDATn~~~~~R~~l~~l-~~~~-~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~ 500 (753)
.+.+.+ .....|+|+...+..+...+.++ ...+ ....+|.+.| +++++.+|+..|.. +| +.+ +
T Consensus 70 --~~~l~~~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~-~~~~~~~Rl~~R~~--~d-----d~~---~ 136 (184)
T PRK02496 70 --QERLQQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDV-PDDVVVERLLARGR--KD-----DTE---E 136 (184)
T ss_pred --HHHHhCcCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeC-CHHHHHHHHhcCCC--CC-----CCH---H
Confidence 122321 23457889888777776666655 2222 1223444456 46777778776632 21 222 3
Q ss_pred HHHHHHhcccccccCC
Q 004453 501 DFKNRLANYEKVYEPV 516 (753)
Q Consensus 501 df~~Ri~~y~~~yEpl 516 (753)
-+.+|++.|++.-+|+
T Consensus 137 ~~~~r~~~y~~~~~~v 152 (184)
T PRK02496 137 VIRRRLEVYREQTAPL 152 (184)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4667888887744444
No 135
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.97 E-value=3.9e-05 Score=78.64 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.2
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
..+.+|+++|.||+|||||+++|.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46789999999999999999999764
No 136
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.95 E-value=0.00029 Score=70.74 Aligned_cols=35 Identities=31% Similarity=0.342 Sum_probs=30.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
.++|++.|.|||||||+|+.|++.|...|.++.+.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 47899999999999999999999999877666443
No 137
>PRK14529 adenylate kinase; Provisional
Probab=97.94 E-value=2.6e-05 Score=81.08 Aligned_cols=114 Identities=12% Similarity=0.200 Sum_probs=63.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHH-------HHHHHHHHHHH
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMEDM 426 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~-------~~vA~~~l~d~ 426 (753)
|+|.|.|||||||+|+.|+++++...+++-.+ +|....+ ... ...+..+.+ .++... -+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdl----lr~~i~~---~t~----lg~~i~~~i~~G~lvpdei~~~---lv 68 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAI----FREHIGG---GTE----LGKKAKEYIDRGDLVPDDITIP---MI 68 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchh----hhhhccC---CCh----HHHHHHHHHhccCcchHHHHHH---HH
Confidence 78899999999999999999988666544221 1332111 000 011110000 111111 12
Q ss_pred HHHHhcC-CeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCcHHHHHHHHHHh
Q 004453 427 ISWMHEG-GQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLK 482 (753)
Q Consensus 427 ~~~l~~~-G~vVIlDATn~~~~~R~~l~~l-~~~~~~v-ifIE~~c~d~~~i~rni~~r 482 (753)
.+.|.+. ....|+|+.--+..+-+.+.++ ...++.+ .+|+..|+ ++++.+|+..|
T Consensus 69 ~~~l~~~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~-~~~l~~Rl~~R 126 (223)
T PRK14529 69 LETLKQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLP-REVAKNRIMGR 126 (223)
T ss_pred HHHHhccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHhhCC
Confidence 2333322 4679999999998888877765 3333222 35556675 45566666655
No 138
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.92 E-value=7.2e-05 Score=74.29 Aligned_cols=27 Identities=22% Similarity=0.047 Sum_probs=23.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
.+|+++|.|||||||+++.|+..+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~ 28 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGD 28 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcC
Confidence 378999999999999999999987643
No 139
>PRK13975 thymidylate kinase; Provisional
Probab=97.91 E-value=0.00018 Score=72.29 Aligned_cols=27 Identities=33% Similarity=0.333 Sum_probs=24.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
+.+|++.|++||||||+|+.|+++|+.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 368999999999999999999999974
No 140
>PRK08118 topology modulation protein; Reviewed
Probab=97.90 E-value=5.3e-05 Score=75.22 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=25.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceE
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~ 383 (753)
-|+++|.|||||||+|++|++.++...++.|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 3889999999999999999999765443333
No 141
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.90 E-value=8.2e-05 Score=70.72 Aligned_cols=31 Identities=29% Similarity=0.244 Sum_probs=25.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceE
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~ 383 (753)
+|+++|.|||||||+|+.|++.++...++.+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 5899999999999999999999765443333
No 142
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.89 E-value=0.00017 Score=71.21 Aligned_cols=74 Identities=20% Similarity=0.299 Sum_probs=50.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHh-hcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 431 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~-~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~ 431 (753)
+|+=++-+||||||+|.+|..-++ |-.+..|-+.. .... +.++.+++ -|.
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~------------------k~~~-------~f~~~~l~----~L~ 51 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFGEWGHVQNDNITG------------------KRKP-------KFIKAVLE----LLA 51 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCC------------------CCHH-------HHHHHHHH----HHh
Confidence 456678999999999999999988 87655544411 1011 11222222 121
Q ss_pred -cCCeEEEEeCCCCCHHHHHHHHHH
Q 004453 432 -EGGQVGIFDATNSSRKRRNMLMKM 455 (753)
Q Consensus 432 -~~G~vVIlDATn~~~~~R~~l~~l 455 (753)
..-.+||+|=.|.....|+++++.
T Consensus 52 ~~~~~vViaDRNNh~~reR~ql~~~ 76 (168)
T PF08303_consen 52 KDTHPVVIADRNNHQKRERKQLFED 76 (168)
T ss_pred hCCCCEEEEeCCCchHHHHHHHHHH
Confidence 357899999999999888888765
No 143
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.89 E-value=0.00013 Score=74.46 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=33.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
++.+|.++|.+||||||+|+.|++.|. +..+.+++.|+|
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCcc
Confidence 688999999999999999999999873 345667777776
No 144
>PRK14526 adenylate kinase; Provisional
Probab=97.88 E-value=1.6e-05 Score=81.94 Aligned_cols=144 Identities=17% Similarity=0.242 Sum_probs=78.0
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCCCCCCCCCCHHHHHHH-------HHHHHHHHHH
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMED 425 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~~~~~~~~~~~~~~~~-------~~vA~~~l~d 425 (753)
|+++|.|||||||+|+.|++.++... ++.|++ |+.... ... ........+ .+++...+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~-----is~G~llr~~~~~-~t~------~g~~i~~~~~~g~lvpd~~~~~lv~- 69 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYH-----ISTGDLFRENILN-STP------LGKEIKQIVENGQLVPDSITIKIVE- 69 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce-----eecChHHHHhccc-CCh------hhHHHHHHHHcCccCChHHHHHHHH-
Confidence 67899999999999999998876543 445544 432211 000 000000000 111111121
Q ss_pred HHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcC-----------C-----
Q 004453 426 MISWMHE--GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQS-----------P----- 487 (753)
Q Consensus 426 ~~~~l~~--~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~-----------p----- 487 (753)
+.|.+ ....+|+|+..-+..+-+.+.++... ..+|++.|+ ++++.+|+..|.... |
T Consensus 70 --~~l~~~~~~~g~ilDGfPR~~~Qa~~l~~~~~~---~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~ 143 (211)
T PRK14526 70 --DKINTIKNNDNFILDGFPRNINQAKALDKFLPN---IKIINFLID-EELLIKRLSGRRICKSCNNIFNIYTLPTKEKG 143 (211)
T ss_pred --HHHhcccccCcEEEECCCCCHHHHHHHHHhcCC---CEEEEEECC-HHHHHHHHHCCCcccccCCccccccCCCCccC
Confidence 22221 24567889777777776666654221 234555675 566666776653210 0
Q ss_pred -------CCCCCCChHHHHHHHHHHHhcccccccCCCC
Q 004453 488 -------DYAEEPDFEAGLQDFKNRLANYEKVYEPVDE 518 (753)
Q Consensus 488 -------d~~~~~d~e~al~df~~Ri~~y~~~yEpl~e 518 (753)
... . ..++..+-+.+|++.|++.-+|+-+
T Consensus 144 ~~~~~~~~l~-~-R~DD~~e~i~~Rl~~y~~~t~pv~~ 179 (211)
T PRK14526 144 ICDVCKGDLY-Q-RKDDKEESLKTRLQEYKLQTKPLIE 179 (211)
T ss_pred cCCCCCCeee-c-cCCCCHHHHHHHHHHHHHhhhHHHH
Confidence 000 1 2344456788999999888888753
No 145
>PRK13808 adenylate kinase; Provisional
Probab=97.87 E-value=1.7e-05 Score=86.99 Aligned_cols=148 Identities=16% Similarity=0.227 Sum_probs=76.7
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHH-------HHHHHHHHHHH
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMEDM 426 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~-------~~vA~~~l~d~ 426 (753)
|+|.|.|||||||+|+.|++.++.. +++.|++-|........ ........+ .++...++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~-----~is~gdlLR~~i~~~s~------~g~~~~~~~~~G~lVPdeiv~~li~-- 69 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIV-----QLSTGDMLRAAVAAGTP------VGLKAKDIMASGGLVPDEVVVGIIS-- 69 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc-----eecccHHHHHHhhcCCh------hhHHHHHHHHcCCCCCHHHHHHHHH--
Confidence 7889999999999999999987643 45555443311111000 000000000 011111111
Q ss_pred HHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCcHHHHHHHHHHhhhcCCC-CCCCCChHHHHHH
Q 004453 427 ISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPD-YAEEPDFEAGLQD 501 (753)
Q Consensus 427 ~~~l~--~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~v-ifIE~~c~d~~~i~rni~~r~~~~pd-~~~~~d~e~al~d 501 (753)
+.|. .....+|+|.-.-+.++.+.+..+ ...++.+ ++|++.|+ ++++.+|+..|...... .... ..++-.+.
T Consensus 70 -e~l~~~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp-~evll~Rl~~R~~~~~~rg~~~-R~DD~~E~ 146 (333)
T PRK13808 70 -DRIEQPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVN-EGALLARVETRVAEMRARGEEV-RADDTPEV 146 (333)
T ss_pred -HHHhcccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECC-HHHHHHHHHcCcccccccCCcc-CCCCCHHH
Confidence 1121 123468899866666777766665 3333222 35555674 56666776665321000 0000 23334567
Q ss_pred HHHHHhcccccccCCC
Q 004453 502 FKNRLANYEKVYEPVD 517 (753)
Q Consensus 502 f~~Ri~~y~~~yEpl~ 517 (753)
|.+|+..|+..-+|+-
T Consensus 147 i~kRL~~Y~~~t~PLl 162 (333)
T PRK13808 147 LAKRLASYRAQTEPLV 162 (333)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 8889999888766654
No 146
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.86 E-value=9.6e-05 Score=77.25 Aligned_cols=151 Identities=20% Similarity=0.197 Sum_probs=79.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHH--H-----HHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR--N-----EVAALA 422 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~--~-----~vA~~~ 422 (753)
.|+-|+++|.|||||||+|+.|++.++... ++.|++-|........ + ........ . ++....
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~-----is~gdllr~~~~~~t~--l----g~~i~~~~~~G~lvpd~iv~~l 73 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKH-----INMGNILREEIKAKTT--I----GKEIQKVVTSGNLVPDNLVIAI 73 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcE-----EECChHHHHHhhcCCh--H----HHHHHHHHHcCCcCCHHHHHHH
Confidence 345599999999999999999999976544 5555543322111000 0 00000000 0 111111
Q ss_pred HHHHHHH-HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhh-c---------------
Q 004453 423 MEDMISW-MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ-Q--------------- 485 (753)
Q Consensus 423 l~d~~~~-l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~-~--------------- 485 (753)
+.+-+.. +...+...|+|+..-+..++..+.+.. . ...+|...+++ +++.+|+..|.. .
T Consensus 74 v~~~l~~~~~~~~~g~iLDGfPRt~~Qa~~l~~~~--~-~~~vi~l~~~~-~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~ 149 (229)
T PTZ00088 74 VKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKIT--N-IDLFVNIYLPR-NILIKKLLGRRICNTCNRNFNIAHIRSDP 149 (229)
T ss_pred HHHHHHhhccccCceEEEecCCCCHHHHHHHHhcC--C-CCEEEEEeCCH-HHHHHHHHcCcCCCccCCcceeccccccc
Confidence 1111111 123467789999766777777665542 1 22345556765 445555555431 0
Q ss_pred --CCC---------------CCCCCChHHHHHHHHHHHhcccccccCCC
Q 004453 486 --SPD---------------YAEEPDFEAGLQDFKNRLANYEKVYEPVD 517 (753)
Q Consensus 486 --~pd---------------~~~~~d~e~al~df~~Ri~~y~~~yEpl~ 517 (753)
.|. .. . ..++..+-+.+|++.|++.-+|+-
T Consensus 150 ~~~pp~~~~~~c~~~~~~~~l~-~-R~DD~~e~i~~Rl~~Y~~~t~pl~ 196 (229)
T PTZ00088 150 YDMPPILPPADCEGCKGNPKLQ-K-RSDDTEEIVAHRLNTYESTNSPII 196 (229)
T ss_pred ccCCCCCCCCcccccCCccccc-C-CCCCCHHHHHHHHHHHHHHhHHHH
Confidence 010 00 1 234445667889999988777764
No 147
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.81 E-value=0.00016 Score=73.16 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=24.9
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.++.+|+|+|.||+|||||+++|.+.+.
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3688999999999999999999988753
No 148
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.79 E-value=0.00021 Score=77.16 Aligned_cols=108 Identities=13% Similarity=0.154 Sum_probs=60.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l 430 (753)
..+|+++|++||||||+++.|+. +++. .+ |.. ... .+.+++..+... .
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~~-~g~~-----~~--d~~-----------------~~~---L~~~l~~~~~~~---~- 53 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALED-LGYY-----CV--DNL-----------------PPS---LLPKLVELLAQS---G- 53 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH-cCCe-----EE--CCc-----------------CHH---HHHHHHHHHHhc---C-
Confidence 34899999999999999999963 2221 11 111 111 111222211110 0
Q ss_pred hcCCeEEEEeCCCC--CHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCC
Q 004453 431 HEGGQVGIFDATNS--SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAE 491 (753)
Q Consensus 431 ~~~G~vVIlDATn~--~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~ 491 (753)
......+++|..+. .++.++.+..+.+.++.+..|-..| +.+++.+|+.......|...+
T Consensus 54 ~~~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a-~~e~L~~Rl~~~rr~RPLl~~ 115 (288)
T PRK05416 54 GIRKVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDA-SDEVLIRRYSETRRRHPLSGD 115 (288)
T ss_pred CCCCeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEEC-CHHHHHHHHhhcccCCCccCC
Confidence 01356889999876 3456677777755565443333345 567777888654444665543
No 149
>PRK13973 thymidylate kinase; Provisional
Probab=97.78 E-value=0.0012 Score=67.93 Aligned_cols=35 Identities=26% Similarity=0.148 Sum_probs=31.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
+++|++-|.+||||||.++.|+++|...|+++..+
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57999999999999999999999999888887665
No 150
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.78 E-value=0.00014 Score=73.63 Aligned_cols=152 Identities=18% Similarity=0.253 Sum_probs=83.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCc----eEEEeccchhhhh-----cCC-CCCCCCCCCCCHHHHHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHD----TKHFNVGKYRRLK-----HGV-NQSADFFRADNPEGMEARNEVAALA 422 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~----t~v~n~d~yRr~~-----~g~-~~~~~~~~~~~~~~~~~~~~vA~~~ 422 (753)
+|-++|.|||||||+|++|+..|+..++. ..++..|.+.... .+. .....|..+. .-.+..+.+....+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~-a~d~~~l~~~l~~L 79 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPD-AFDFDLLKEDLKAL 79 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGG-GBSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCcc-ccCHHHHHHHHHHH
Confidence 68899999999999999999999988776 4566666553211 111 1111222111 10122222222211
Q ss_pred HHH------HHHH----------HhcCCeEEEEeCCCCC-HHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhc
Q 004453 423 MED------MISW----------MHEGGQVGIFDATNSS-RKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ 485 (753)
Q Consensus 423 l~d------~~~~----------l~~~G~vVIlDATn~~-~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~ 485 (753)
.+- .++| ......++|+++.+.. .+. ++.+. ++ .+||+ |+.+..+.||+.+....
T Consensus 80 ~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~---l~~l~--D~-~ifld--~~~~~~l~Rri~RD~~~ 151 (194)
T PF00485_consen 80 KNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEE---LRDLF--DL-KIFLD--ADEDLRLERRIQRDVAE 151 (194)
T ss_dssp HTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHC---HGGG---SE-EEEEE--E-HHHHHHHHHHHHHHH
T ss_pred hCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeee---ecccc--ee-EEEec--ccHHHHHHHHhhhhccc
Confidence 100 0000 0123468888888753 222 33332 22 35776 45555788888776542
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcccccccCCCC
Q 004453 486 SPDYAEEPDFEAGLQDFKNRLANYEKVYEPVDE 518 (753)
Q Consensus 486 ~pd~~~~~d~e~al~df~~Ri~~y~~~yEpl~e 518 (753)
.+. +.+++++.+..+...+++.-+|-.+
T Consensus 152 ----rG~-~~~~~~~~~~~~~~~~~~~I~p~~~ 179 (194)
T PF00485_consen 152 ----RGR-SPEEVIAQYERVRPGYERYIEPQKE 179 (194)
T ss_dssp ----S-S--HHHHHHHHHTHHHHHHHCTGGGGG
T ss_pred ----cCC-cceeEEEEeecCChhhhhheecccc
Confidence 234 6899999999888888888777654
No 151
>PRK06547 hypothetical protein; Provisional
Probab=97.77 E-value=0.00014 Score=72.74 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=29.8
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
+..+.+|+++|.|||||||+|+.|++.++.. +++.|+|
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~-----~~~~d~~ 49 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQ-----LVHLDDL 49 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCC-----eecccce
Confidence 3568899999999999999999999986533 4545544
No 152
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.72 E-value=0.00024 Score=68.78 Aligned_cols=131 Identities=18% Similarity=0.291 Sum_probs=69.3
Q ss_pred EEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHH------HHHHHHHHH-H
Q 004453 356 LVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEV------AALAMEDMI-S 428 (753)
Q Consensus 356 mvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~v------A~~~l~d~~-~ 428 (753)
+.|-|||||||+|+.|++.++. ..++.++.-|..... .++.+.+....+ -...+-+++ .
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~-----~~is~~~llr~~~~~---------~s~~g~~i~~~l~~g~~vp~~~v~~ll~~ 66 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL-----VHISVGDLLREEIKS---------DSELGKQIQEYLDNGELVPDELVIELLKE 66 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS-----EEEEHHHHHHHHHHT---------TSHHHHHHHHHHHTTSS--HHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc-----ceechHHHHHHHHhh---------hhHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 5799999999999999998643 456666553322110 111111111000 011111122 2
Q ss_pred HHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 004453 429 WMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 504 (753)
Q Consensus 429 ~l~--~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~v-ifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~ 504 (753)
.+. ......|+|+---+.++-+.+.+. ...++.+ .+|.+.|+++ .+.+|+.. + + .+-+.+
T Consensus 67 ~l~~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~-~~~~R~~~---------d--~----~~~i~~ 130 (151)
T PF00406_consen 67 RLEQPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDE-TLIERLSQ---------D--N----EEVIKK 130 (151)
T ss_dssp HHHSGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HH-HHHHHHHT---------G--S----HHHHHH
T ss_pred HHhhhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchh-hhhhhccc---------C--C----HHHHHH
Confidence 232 236788999988888776666664 2234443 6677788654 45555533 1 1 223567
Q ss_pred HHhcccccccCC
Q 004453 505 RLANYEKVYEPV 516 (753)
Q Consensus 505 Ri~~y~~~yEpl 516 (753)
|++.|++.-+|+
T Consensus 131 Rl~~y~~~~~~i 142 (151)
T PF00406_consen 131 RLEEYRENTEPI 142 (151)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776655543
No 153
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.72 E-value=0.00023 Score=80.57 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=39.9
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
.+|.+|+|+|++|+||||++.+|+.+|...|.++-+++.|.||
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4588999999999999999999999998889899999999987
No 154
>PRK15453 phosphoribulokinase; Provisional
Probab=97.70 E-value=0.00013 Score=78.07 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=38.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
++.+|+++|.|||||||+|++|+..|+..++.+.++..|+|.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4679999999999999999999999988888889999998865
No 155
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.70 E-value=0.00035 Score=70.28 Aligned_cols=142 Identities=18% Similarity=0.218 Sum_probs=77.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHH-------HHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMED 425 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~-------~~vA~~~l~d 425 (753)
-|++.|.|||||||+|++|++.++-.. ++.|++=|.. .... .+...+....+ ..+...++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h-----lstgd~~r~~--~~~~----t~lg~~~k~~i~~g~lv~d~i~~~~v~- 69 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH-----LDTGDILRAA--IAER----TELGEEIKKYIDKGELVPDEIVNGLVK- 69 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE-----EcHhHHhHhh--hccC----ChHHHHHHHHHHcCCccchHHHHHHHH-
Confidence 378999999999999999999965444 4433331210 0000 00011111100 011112222
Q ss_pred HHHHHhcC--CeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 004453 426 MISWMHEG--GQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 501 (753)
Q Consensus 426 ~~~~l~~~--G~vVIlDATn~~~~~R~~l~~l-~~~~~~v-ifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~d 501 (753)
.++.+. ...+|+|....+...-+.+..+ .+.+.+. ..+++.+++ +.+-.|+..|.. . .++..+.
T Consensus 70 --~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~-~~~~~r~~~r~~----r-----~dd~~~~ 137 (178)
T COG0563 70 --ERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPE-ELLLERLLGRRV----R-----EDDNEET 137 (178)
T ss_pred --HHHHhhcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCH-HHHHHHHhCccc----c-----ccCCHHH
Confidence 223322 2279999988888776666665 4444333 345556655 666666655432 1 1223345
Q ss_pred HHHHHhcccccccCCCC
Q 004453 502 FKNRLANYEKVYEPVDE 518 (753)
Q Consensus 502 f~~Ri~~y~~~yEpl~e 518 (753)
+.+|+..|.+.-.|+-+
T Consensus 138 ~~~R~~~y~~~~~pli~ 154 (178)
T COG0563 138 VKKRLKVYHEQTAPLIE 154 (178)
T ss_pred HHHHHHHHHhcccchhh
Confidence 68888888887777754
No 156
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.69 E-value=0.00039 Score=71.03 Aligned_cols=42 Identities=36% Similarity=0.418 Sum_probs=36.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
|.+|+|+|.+|+||||.+.+|+.++...+.+.-+++.|.||-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 689999999999999999999999987788888899888864
No 157
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.68 E-value=9.3e-05 Score=72.72 Aligned_cols=27 Identities=37% Similarity=0.447 Sum_probs=24.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcC
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLG 379 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~g 379 (753)
+|.+.|+|||||||+|+.|+++|+...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~ 28 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL 28 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce
Confidence 688999999999999999999987544
No 158
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.66 E-value=7.2e-05 Score=73.16 Aligned_cols=36 Identities=31% Similarity=0.389 Sum_probs=28.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
++|+++|.|||||||+|+.|++.|+.. +++.|++.+
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~-----~~~~~~~~~ 36 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLK-----LISAGDIFR 36 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCc-----eecHHHHHH
Confidence 379999999999999999999987543 466655433
No 159
>PLN02459 probable adenylate kinase
Probab=97.66 E-value=0.00038 Score=74.04 Aligned_cols=114 Identities=16% Similarity=0.241 Sum_probs=62.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCCCCCCCCCCHHHHHHH-------HHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAAL 421 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~~~~~~~~~~~~~~~~-------~~vA~~ 421 (753)
+++.|++.|-|||||||+|+.|+++++... ++.|++ |+.... .. .+ .......+ .++...
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~-----is~gdllR~ei~~-~t--~l----g~~i~~~~~~G~lVPdeiv~~ 95 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPH-----IATGDLVREEIKS-SG--PL----GAQLKEIVNQGKLVPDEIIFS 95 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcE-----EeCcHHHHHHHhc-cc--hh----HHHHHHHHHcCCccCHHHHHH
Confidence 456688899999999999999999976543 555544 442211 00 00 00000000 011111
Q ss_pred HHHHHHHHHh----cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHh
Q 004453 422 AMEDMISWMH----EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (753)
Q Consensus 422 ~l~d~~~~l~----~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r 482 (753)
++. +.|. .....+|+|+---+..+-+.+..+.. +. .+|++.|++ +++.+|+..|
T Consensus 96 ll~---~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~--id-~Vi~L~v~d-~~l~~Rl~gR 153 (261)
T PLN02459 96 LLS---KRLEAGEEEGESGFILDGFPRTVRQAEILEGVTD--ID-LVVNLKLRE-EVLVEKCLGR 153 (261)
T ss_pred HHH---HHHhcccccCCceEEEeCCCCCHHHHHHHHhcCC--CC-EEEEEECCH-HHHHHHhhcc
Confidence 111 2222 12467999998888887777765532 22 255556764 5555666655
No 160
>PRK04182 cytidylate kinase; Provisional
Probab=97.63 E-value=4.4e-05 Score=75.20 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=24.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
++|+++|.|||||||+|+.|++.|++.
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~ 27 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLK 27 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 379999999999999999999997653
No 161
>PLN02348 phosphoribulokinase
Probab=97.58 E-value=0.00048 Score=76.97 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=36.0
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcC---------------CceEEEeccch
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG---------------HDTKHFNVGKY 390 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~g---------------i~t~v~n~d~y 390 (753)
..+|++|-+.|-|||||||+|+.|+..|+..+ ..+-++..|+|
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDY 103 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDY 103 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccc
Confidence 35789999999999999999999999997532 35567888888
No 162
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.57 E-value=0.00025 Score=75.52 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=37.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
+|.++|.+||||||+|++|.+.|+..+.++-++..|+|.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 5889999999999999999999998888999999999976
No 163
>PLN02924 thymidylate kinase
Probab=97.57 E-value=0.00062 Score=70.79 Aligned_cols=37 Identities=38% Similarity=0.522 Sum_probs=33.2
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
..+.+|++.|.+||||||+++.|+++|...|+++..+
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~ 50 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELW 50 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceee
Confidence 3567999999999999999999999999999887665
No 164
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.56 E-value=0.00081 Score=67.52 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=22.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
+.+||++|.+|+||+|++.+|.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3589999999999999999998875
No 165
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.55 E-value=0.00087 Score=65.88 Aligned_cols=148 Identities=11% Similarity=0.111 Sum_probs=97.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADN-PEGMEARNEVAALAMEDMISW 429 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~-~~~~~~~~~vA~~~l~d~~~~ 429 (753)
|.+-+|.|..||||||+...+...+. -...++|.|.+-. +. .+.+. ...++ .++ ...+.+.+
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~---~~~~~VN~D~iA~---~i------~p~~p~~~~i~----A~r-~ai~~i~~ 64 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLL---PGIVFVNADEIAA---QI------SPDNPTSAAIQ----AAR-VAIDRIAR 64 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhc---CCeEEECHHHHhh---hc------CCCCchHHHHH----HHH-HHHHHHHH
Confidence 67889999999999998765554432 2456677776632 11 11121 11121 222 22234455
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHhcc
Q 004453 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 509 (753)
Q Consensus 430 l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~~y 509 (753)
+.+.|...+...|...+..++.++..+..|+-++...+..+..++-.+|++.|..+.. + +. ..+..-..|.+++++.
T Consensus 65 ~I~~~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GG-H-~I-pED~Ir~RY~rsle~l 141 (187)
T COG4185 65 LIDLGRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGG-H-DI-PEDKIRRRYRRSLELL 141 (187)
T ss_pred HHHcCCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCC-C-CC-cHHHHHHHHHHHHHHH
Confidence 6678999999999999999999999988898776666666677788999999876433 2 12 2344456677777766
Q ss_pred cccccCCCC
Q 004453 510 EKVYEPVDE 518 (753)
Q Consensus 510 ~~~yEpl~e 518 (753)
...++=.++
T Consensus 142 ~~~l~l~dr 150 (187)
T COG4185 142 AQALTLADR 150 (187)
T ss_pred HHHHhhcce
Confidence 666655553
No 166
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.54 E-value=0.00055 Score=70.72 Aligned_cols=150 Identities=17% Similarity=0.282 Sum_probs=81.8
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCC----CCCCCCCCCCHHHHHHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVN----QSADFFRADNPEGMEARNEVAALAME 424 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~----~~~~~~~~~~~~~~~~~~~vA~~~l~ 424 (753)
.++++|-+.|-+||||||+|+.|...|+-. ..-++..|+|=+...... ....|..+ ..--. ++....|.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p-~A~D~----dLl~~~L~ 78 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKDQSHLPFEERNKINYDHP-EAFDL----DLLIEHLK 78 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeeccccccchhhcCHhhcCCcCccCh-hhhcH----HHHHHHHH
Confidence 456899999999999999999999998743 455677777733110000 01111100 00001 12222222
Q ss_pred HHH----------HHH---h-------cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhh
Q 004453 425 DMI----------SWM---H-------EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (753)
Q Consensus 425 d~~----------~~l---~-------~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~ 484 (753)
++. +|- . ....+||+++...... +.++++. +++ +||+ |+.+..+.||+.+...
T Consensus 79 ~L~~g~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~~~--d~k-Ifvd--td~D~RliRri~RD~~ 151 (218)
T COG0572 79 DLKQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRDLM--DLK-IFVD--TDADVRLIRRIKRDVQ 151 (218)
T ss_pred HHHcCCcccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHhhc--CEE-EEEe--CCccHHHHHHHHHHHH
Confidence 111 110 0 1245677777766444 2233332 222 4665 4566788888877654
Q ss_pred cCCCCCCCCChHHHHHHHHHHH-hcccccccCCC
Q 004453 485 QSPDYAEEPDFEAGLQDFKNRL-ANYEKVYEPVD 517 (753)
Q Consensus 485 ~~pd~~~~~d~e~al~df~~Ri-~~y~~~yEpl~ 517 (753)
. .+. +.+..++.|...+ ++|++.-||..
T Consensus 152 ~----rg~-~~e~vi~qy~~~vkp~~~~fIeptk 180 (218)
T COG0572 152 E----RGR-DLESVIEQYVKTVRPMYEQFIEPTK 180 (218)
T ss_pred H----hCC-CHHHHHHHHHHhhChhhhhccCccc
Confidence 2 234 7888888888544 55555556554
No 167
>PRK10867 signal recognition particle protein; Provisional
Probab=97.53 E-value=0.0006 Score=77.55 Aligned_cols=44 Identities=34% Similarity=0.458 Sum_probs=40.1
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhc-CCceEEEeccchhh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKYRR 392 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~-gi~t~v~n~d~yRr 392 (753)
..|.+|+|+|++|+||||+|..|+.+|... |.++-+++.|.||-
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 458999999999999999999999999877 88999999998876
No 168
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.52 E-value=0.00096 Score=69.91 Aligned_cols=131 Identities=17% Similarity=0.187 Sum_probs=77.9
Q ss_pred CCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCC-----C-----------CCCCCCCC-
Q 004453 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQ-----S-----------ADFFRADN- 408 (753)
Q Consensus 346 ~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~-----~-----------~~~~~~~~- 408 (753)
++...|++|++-|-||.||||+|..|++.|+ ++. +++.|-+|..+-+.-+ . .......+
T Consensus 84 r~~~~p~IILIGGasGVGkStIA~ElA~rLg---I~~-visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~p 159 (299)
T COG2074 84 RKMKRPLIILIGGASGVGKSTIAGELARRLG---IRS-VISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENP 159 (299)
T ss_pred hccCCCeEEEecCCCCCChhHHHHHHHHHcC---Cce-eecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcc
Confidence 3455799999999999999999999999966 332 4455555765422111 0 00001111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhh
Q 004453 409 -PEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (753)
Q Consensus 409 -~~~~~~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~ 484 (753)
-.+++...+...-..+.+++.-.++|..+|+-++..-+..-+.-.. +. .++..-+...|+++.++|...|..
T Consensus 160 iiaGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~~~--~~--n~~~~~l~i~dee~Hr~RF~~R~~ 232 (299)
T COG2074 160 IIAGFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEEAL--GN--NVFMFMLYIADEELHRERFYDRIR 232 (299)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHhhh--cc--ceEEEEEEeCCHHHHHHHHHHHHH
Confidence 1223333333333333344444448999999999998874222111 12 233333456799999999998865
No 169
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.51 E-value=0.0011 Score=66.72 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
+|++.|.+||||||+++.|+++++.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~ 25 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGY 25 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999998653
No 170
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.51 E-value=0.0027 Score=66.11 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=35.6
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEE-Eeccch
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH-FNVGKY 390 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v-~n~d~y 390 (753)
..++.+|.+.|.+||||||+++.|+..|...+....+ ++.|++
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 3578999999999999999999999999877666555 666554
No 171
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.46 E-value=0.00055 Score=77.95 Aligned_cols=44 Identities=41% Similarity=0.555 Sum_probs=40.3
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
.+|.+|+|+|++|+||||+|..|+.+|...|.++-+++.|.||-
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 46899999999999999999999999998899999999988865
No 172
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.45 E-value=0.0011 Score=71.14 Aligned_cols=44 Identities=30% Similarity=0.351 Sum_probs=38.6
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
.++.+|+++|.+|+||||++..|+.++...|.++-+++.|-||.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 45789999999999999999999999988888888888887754
No 173
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.44 E-value=0.0023 Score=64.30 Aligned_cols=146 Identities=17% Similarity=0.280 Sum_probs=82.1
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHH----------HHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR----------NEV 418 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~----------~~v 418 (753)
..+.+|++.|=|||||=|.+.+|+.+++|. +++.|++-|..... +.++...... .++
T Consensus 6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~ft-----HlSaGdLLR~E~~~--------~gse~g~~I~~~i~~G~iVP~ei 72 (195)
T KOG3079|consen 6 DKPPIIFVLGGPGSGKGTQCEKIVEKYGFT-----HLSAGDLLRAEIAS--------AGSERGALIKEIIKNGDLVPVEI 72 (195)
T ss_pred cCCCEEEEEcCCCCCcchHHHHHHHHcCce-----eecHHHHHHHHHcc--------ccChHHHHHHHHHHcCCcCcHHH
Confidence 346688888999999999999999997754 47777664422211 1122222211 122
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHc-CCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHH
Q 004453 419 AALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAE-GNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEA 497 (753)
Q Consensus 419 A~~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~-~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~ 497 (753)
...+|++...-..+.+ ..++|.-.-..++...|..-.. ..--++|++ |+.+.+++|-+.+. +.+. -.| +
T Consensus 73 ~~~LL~~am~~~~~~~-~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fd--c~ee~~l~Rll~R~-q~~~-R~D-----D 142 (195)
T KOG3079|consen 73 TLSLLEEAMRSSGDSN-GFLIDGYPRNVDQLVEFERKIQGDPDFVLFFD--CPEETMLKRLLHRG-QSNS-RSD-----D 142 (195)
T ss_pred HHHHHHHHHHhcCCCC-eEEecCCCCChHHHHHHHHHhcCCCCEEEEEe--CCHHHHHHHHHhhc-ccCC-CCC-----C
Confidence 2333332222222222 2788987777778777776643 223455665 76555665555444 3322 222 2
Q ss_pred HHHHHHHHHhcccccccCCC
Q 004453 498 GLQDFKNRLANYEKVYEPVD 517 (753)
Q Consensus 498 al~df~~Ri~~y~~~yEpl~ 517 (753)
-.+-.++|++.|.+.=.|+-
T Consensus 143 n~esikkR~et~~~~t~Pvi 162 (195)
T KOG3079|consen 143 NEESIKKRLETYNKSTLPVI 162 (195)
T ss_pred chHHHHHHHHHHHHcchHHH
Confidence 23345788888876655653
No 174
>PTZ00301 uridine kinase; Provisional
Probab=97.40 E-value=0.0022 Score=66.22 Aligned_cols=155 Identities=15% Similarity=0.195 Sum_probs=79.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhh-cCCc-eEEEeccchhhhhcCCCC-CCCCCCCCCHHHH--HHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRW-LGHD-TKHFNVGKYRRLKHGVNQ-SADFFRADNPEGM--EARNEVAALAMED 425 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~-~gi~-t~v~n~d~yRr~~~g~~~-~~~~~~~~~~~~~--~~~~~vA~~~l~d 425 (753)
.++|-+.|-|||||||+|++|.+.|.. .+-. +.++..|+|-+....... .....+-+..+++ ..+.+....+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 478999999999999999999988753 3333 346777777331111100 0111111222221 1122211111110
Q ss_pred ------HHHHHh----------cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCC
Q 004453 426 ------MISWMH----------EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDY 489 (753)
Q Consensus 426 ------~~~~l~----------~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~ 489 (753)
.++|-. ....++|+++...... ..+..+. +++ +||+ |+.+..+.||+.+-...
T Consensus 83 ~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~--~~l~~l~--D~~-ifvd--~~~d~~~~Rr~~Rd~~~---- 151 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN--AELRNEM--DCL-IFVD--TPLDICLIRRAKRDMRE---- 151 (210)
T ss_pred CcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC--HHHHHhC--CEE-EEEe--CChhHHHHHHHhhhHHh----
Confidence 011110 1245788888877311 2333332 232 5776 66666777777665432
Q ss_pred CCCCChHHHHHHHHHHHh-cccccccCCC
Q 004453 490 AEEPDFEAGLQDFKNRLA-NYEKVYEPVD 517 (753)
Q Consensus 490 ~~~~d~e~al~df~~Ri~-~y~~~yEpl~ 517 (753)
.+. +.+.+++.+.++.. .+...-+|..
T Consensus 152 rG~-~~e~v~~~~~~~v~~~~~~~I~p~k 179 (210)
T PTZ00301 152 RGR-TFESVIEQYEATVRPMYYAYVEPSK 179 (210)
T ss_pred cCC-CHHHHHHHHHHhhcccHHHHcCccc
Confidence 234 67888777777643 3333334544
No 175
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.37 E-value=0.004 Score=62.39 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=60.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCC-CCCCCHHHHHHH--------------
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADF-FRADNPEGMEAR-------------- 415 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~-~~~~~~~~~~~~-------------- 415 (753)
+.+|||+|.+|+|||||+++|.+.+.-.......... |....|-....+| |- +++.+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TT---R~~r~~E~~g~~y~fv--s~~~f~~~~~~~~fie~~~~~g 76 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTT---RPPRPGEVDGVDYHFV--SKEEFERMIKAGEFIEYGEYDG 76 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEES---S-GGTTS-TTTSEEE----HHHHHHHHHTTHEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecc---cCCcccccCCcceEEE--eechhhhhhccccEEEEeeecc
Confidence 4578999999999999999999886522111111211 3322221111111 21 22222211
Q ss_pred ------HHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHh
Q 004453 416 ------NEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (753)
Q Consensus 416 ------~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r 482 (753)
..-+..++ +.|.++|+|.. . +.+..+.+.+...++|-+.++..+.++++++++
T Consensus 77 ~~YGt~~~~i~~~~--------~~gk~~il~~~---~---~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r 135 (183)
T PF00625_consen 77 NYYGTSKSAIDKVL--------EEGKHCILDVD---P---EGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRR 135 (183)
T ss_dssp EEEEEEHHHHHHHH--------HTTTEEEEEET---H---HHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTT
T ss_pred hhhhhccchhhHhh--------hcCCcEEEEcc---H---HHHHHHHhcccCceEEEEEccchHHHHHHHhcc
Confidence 11112222 26899999965 2 234444333555556666678888899988665
No 176
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.36 E-value=0.0012 Score=74.99 Aligned_cols=44 Identities=34% Similarity=0.472 Sum_probs=39.3
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHh-hcCCceEEEeccchhh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRR 392 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~-~~gi~t~v~n~d~yRr 392 (753)
.+|.+|+|+|++|+||||+|..|+.+|. ..|.++-+++.|.||-
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 4689999999999999999999999986 5788999999998875
No 177
>PRK14974 cell division protein FtsY; Provisional
Probab=97.34 E-value=0.0014 Score=72.40 Aligned_cols=44 Identities=34% Similarity=0.437 Sum_probs=38.8
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
.+|.+|+|+|.||+||||++.+|+.+|...+.++-+++.|-||.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence 45889999999999999999999999988888888888887764
No 178
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.32 E-value=0.003 Score=65.36 Aligned_cols=28 Identities=29% Similarity=0.147 Sum_probs=24.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCC
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi 380 (753)
+|++-|.-||||||+++.|+++|.+..+
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~ 28 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 5889999999999999999999976433
No 179
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.0011 Score=72.92 Aligned_cols=106 Identities=22% Similarity=0.317 Sum_probs=69.5
Q ss_pred cCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhc------CCCCCCCCCCCCCHHHHHHHHH
Q 004453 344 LGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKH------GVNQSADFFRADNPEGMEARNE 417 (753)
Q Consensus 344 ~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~------g~~~~~~~~~~~~~~~~~~~~~ 417 (753)
+.++..+|-+|.++||-|+||||.+-+|+.|+...|.++-++-.|.+|--.+ .....-.||...++.- -.+
T Consensus 94 ~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~d---pv~ 170 (483)
T KOG0780|consen 94 LQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEAD---PVK 170 (483)
T ss_pred cccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccc---hHH
Confidence 3355678999999999999999999999999999999998887777765211 0111223443332211 113
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Q 004453 418 VAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM 455 (753)
Q Consensus 418 vA~~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l 455 (753)
+|.+.+ ..|=+++-.++|+|...-.+..-.++.++
T Consensus 171 ia~egv---~~fKke~fdvIIvDTSGRh~qe~sLfeEM 205 (483)
T KOG0780|consen 171 IASEGV---DRFKKENFDVIIVDTSGRHKQEASLFEEM 205 (483)
T ss_pred HHHHHH---HHHHhcCCcEEEEeCCCchhhhHHHHHHH
Confidence 333333 34445666777888777666666666666
No 180
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.28 E-value=0.0047 Score=62.43 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=30.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
+|.++|.+||||||+|+.|...| .+..+.+++.|+|-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 57899999999999999999987 34567778777764
No 181
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.26 E-value=0.0024 Score=63.12 Aligned_cols=40 Identities=45% Similarity=0.580 Sum_probs=35.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
+++++|.||+||||+++.++..+...+.+.-+++.|.+|.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 7899999999999999999999988888888898887754
No 182
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.25 E-value=0.0021 Score=65.53 Aligned_cols=38 Identities=24% Similarity=0.150 Sum_probs=29.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 394 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~ 394 (753)
.+|.++|.+||||||+|+.|++.++.. +++.|++.+..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~-----~i~~D~~~~~~ 39 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIP-----ILDADIYAREA 39 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCe-----EeeCcHHHHHH
Confidence 379999999999999999999876544 35556555543
No 183
>PRK13974 thymidylate kinase; Provisional
Probab=97.24 E-value=0.0043 Score=63.90 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=26.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcC
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~g 379 (753)
..+|++.|.+||||||.++.|+++|...|
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g 31 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSG 31 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 46999999999999999999999997554
No 184
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.24 E-value=0.0059 Score=62.42 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=30.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
.+.+|.++|.+||||||+|+.|+..+.. ..+.+++.|+|
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 4579999999999999999999998764 23445666655
No 185
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.19 E-value=0.0019 Score=67.08 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=31.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhh--cCCceEEEeccch
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 390 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~--~gi~t~v~n~d~y 390 (753)
+|-+.|.+||||||+|+.|+..|.. .+.++.+++.|+|
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 4678899999999999999999874 4456677777766
No 186
>PLN02165 adenylate isopentenyltransferase
Probab=97.14 E-value=0.0027 Score=69.77 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=27.5
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCce
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDT 382 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t 382 (753)
..+.+|+++|.+|||||++|..|++.+++.-+++
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsa 74 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINS 74 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecC
Confidence 4455899999999999999999999987543333
No 187
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.13 E-value=0.0035 Score=68.78 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=37.6
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
.++.+|.++|.+|+||||++..|+.++...+.++-+++.|-+|
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 3578999999999999999999999998888888888777665
No 188
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=97.12 E-value=0.00089 Score=67.45 Aligned_cols=122 Identities=16% Similarity=0.204 Sum_probs=69.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceE-EEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK-HFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI--- 427 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~-v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~--- 427 (753)
.++.+.|+|++|||++++.|.-.-..+.++.. .+..|+++- ...++++- .-.+...........|...+.
T Consensus 2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlm---daTpSaD~---a~keqRgr~~~~iEk~ISaiqedt 75 (291)
T KOG4622|consen 2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLM---DATPSADK---AAKEQRGRFECHIEKCISAIQEDT 75 (291)
T ss_pred ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhh---hcCcchhh---hHHHHhchHHHHHHHHHHHHhccc
Confidence 37889999999999999998755444443322 233355532 11111111 011111222333333333222
Q ss_pred HH------------HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHH
Q 004453 428 SW------------MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNI 479 (753)
Q Consensus 428 ~~------------l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni 479 (753)
+| ++.+-.+.++|..|..+..|..+.++ ..+|+.+=.|..-..-.+++++|-
T Consensus 76 dwppqvrrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS 140 (291)
T KOG4622|consen 76 DWPPQVRRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANS 140 (291)
T ss_pred CCCchheeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhcc
Confidence 22 12234688899999999999999999 777776544433333456677664
No 189
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=97.11 E-value=0.00072 Score=70.50 Aligned_cols=57 Identities=26% Similarity=0.312 Sum_probs=47.5
Q ss_pred cEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCC--------CCCEEEEcCcHHHHHHHHHh
Q 004453 561 PILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSE--------RAASIWTSTLQRTILTASPI 626 (753)
Q Consensus 561 ~IyLVRHGEs~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~--------~~~~V~tSpl~RaiqTA~~i 626 (753)
-.+++|||++.- ..||..|++|+..+|+++.+++... ..-.+++|+..||+|||+.+
T Consensus 5 v~~~~RHg~r~p---------~~LT~~G~~q~~~~G~~lr~~y~~~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~ 69 (242)
T cd07061 5 VQVLSRHGDRYP---------GELTPFGRQQAFELGRYFRQRYGELLLLHSYNRSDLYIRSSDSQRTLQSAQAF 69 (242)
T ss_pred EEEEEecCCCCc---------hhhhHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEEECCCcHHHHHHHHH
Confidence 357889999842 4699999999999999999876432 23478999999999999998
No 190
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=97.10 E-value=0.00049 Score=75.55 Aligned_cols=102 Identities=23% Similarity=0.257 Sum_probs=64.3
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~ 428 (753)
..+-+|+++|+||+||||++......=+. .+.|.|-+ |. .+ .+...+.+
T Consensus 267 ~~~eiV~~vgfp~sGks~f~a~~~~~~~y-----~~vn~d~l-----g~----------~~-------~C~~~~~e---- 315 (422)
T KOG2134|consen 267 GHGEIVVAVGFPGSGKSTFAAKRVVPNGY-----KIVNADTL-----GT----------PQ-------NCLLANAE---- 315 (422)
T ss_pred CCCcEEEEEecCCCCcchhhhhhcccCce-----eEeecccC-----CC----------ch-------hhHHHHHH----
Confidence 34479999999999999998655432111 12222111 10 01 22222222
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHhh
Q 004453 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 483 (753)
Q Consensus 429 ~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r~ 483 (753)
+|. .|..||+|.||+..+.|..+.+. .+.++.+-.+|..|+ .+--+.|++-|.
T Consensus 316 ~l~-~~~sVvidnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s-~eq~~hn~~fR~ 369 (422)
T KOG2134|consen 316 ALK-HGKSVVIDNTNPDAESRKYYLDCATEREIPIRCFEMNSS-VEQAQHNNRFRE 369 (422)
T ss_pred Hhh-cccEEeeCCCCcchHHHHHHhhhHHHhCccceeeeeccH-HHhhhccccchh
Confidence 222 68999999999999999999998 566777777887775 455555555553
No 191
>PRK07933 thymidylate kinase; Validated
Probab=97.08 E-value=0.024 Score=58.60 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=30.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
++|++.|+-||||||+++.|+++|...|+++.+.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~ 34 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL 34 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3799999999999999999999999988877655
No 192
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.08 E-value=0.001 Score=77.12 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=27.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~ 381 (753)
++.+|++.|.+||||||+|+.|+++|++..++
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d 314 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLD 314 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 46799999999999999999999998754433
No 193
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.08 E-value=0.00066 Score=57.44 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=25.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
+|+++|.|||||||+|++|++.| .+.+..++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i 31 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVL 31 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEE
Confidence 47889999999999999999997 34445444
No 194
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.07 E-value=0.0034 Score=63.16 Aligned_cols=36 Identities=22% Similarity=0.143 Sum_probs=27.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 393 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~ 393 (753)
+|.++|-+||||||+|+.|++..+ ..+++.|++-+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~-----~~~i~~D~~~~~ 36 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYH-----FPVIDADKIAHQ 36 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC-----CeEEeCCHHHHH
Confidence 478999999999999999998643 345666666443
No 195
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.07 E-value=0.0033 Score=63.85 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=27.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
+|.++|.|||||||+|+.|++.+. .+.+++.|+|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf 34 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQDDF 34 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC----CCeEEccccc
Confidence 578899999999999999999873 3556666666
No 196
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.06 E-value=0.0023 Score=63.39 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=30.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
+++++++|.||+||||+.+.+.+.| ++..++|-|++
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l----~~~~ivNyG~~ 39 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL----VKHKIVNYGDL 39 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH----hhceeeeHhHH
Confidence 6899999999999999999998887 56667777766
No 197
>PLN02842 nucleotide kinase
Probab=97.06 E-value=0.0053 Score=70.90 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.4
Q ss_pred EEEccCCCCHHHHHHHHHHHHhhcC
Q 004453 355 VLVGLPARGKTFTAAKLTRYLRWLG 379 (753)
Q Consensus 355 vmvGLPGSGKSTlAr~L~r~L~~~g 379 (753)
++.|.|||||||+|+.|+++++...
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~h 25 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVH 25 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCE
Confidence 4789999999999999999876433
No 198
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.04 E-value=0.032 Score=55.73 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=24.1
Q ss_pred EEccCCCCHHHHHHHHHHHHhhcCCc
Q 004453 356 LVGLPARGKTFTAAKLTRYLRWLGHD 381 (753)
Q Consensus 356 mvGLPGSGKSTlAr~L~r~L~~~gi~ 381 (753)
+=|+.||||||+++.|.++|...+++
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~ 26 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYK 26 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCc
Confidence 35999999999999999999999987
No 199
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.013 Score=59.32 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=23.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
++++||++|.+|+|||||.++|-+..
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 57899999999999999999998775
No 200
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.033 Score=57.55 Aligned_cols=36 Identities=28% Similarity=0.268 Sum_probs=32.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
++++|++-|+=||||||.++.|.++|...|+++...
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t 37 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT 37 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 467999999999999999999999999999866554
No 201
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.99 E-value=0.004 Score=62.27 Aligned_cols=35 Identities=26% Similarity=0.183 Sum_probs=26.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 393 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~ 393 (753)
+|.++|.|||||||+|+.|++ ++. .+++.|++-+.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~-----~~i~~D~~~~~ 35 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGI-----PVIDADKIAHE 35 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCC-----CEEecCHHHHh
Confidence 488999999999999999997 432 34666665443
No 202
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.92 E-value=0.0037 Score=68.86 Aligned_cols=42 Identities=26% Similarity=0.280 Sum_probs=37.2
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
..++.+|.++|.||+||||+...|...|...+.++-+++.|.
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 346899999999999999999999999998888888887654
No 203
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.92 E-value=0.005 Score=56.96 Aligned_cols=34 Identities=32% Similarity=0.431 Sum_probs=27.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
|+++|.||+|||++|+.|+++++ .....++.++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~---~~~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG---FPFIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT---SEEEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc---ccccccccccc
Confidence 68999999999999999999964 55555655444
No 204
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.90 E-value=0.0056 Score=63.85 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=28.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEE
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v 384 (753)
+.+|.+.|.|||||||+|+.|+++|+...+++..
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~ 37 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGA 37 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCch
Confidence 5799999999999999999999998765544444
No 205
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.83 E-value=0.00095 Score=61.60 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=21.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHH
Q 004453 354 IVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L 375 (753)
|+++|.|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997
No 206
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=96.81 E-value=0.0028 Score=64.40 Aligned_cols=37 Identities=22% Similarity=0.133 Sum_probs=28.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 394 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~ 394 (753)
.+|.++|.+||||||+++.|++ ++. .+++.|.+-+..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~-----~~i~~D~~~~~~ 39 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGA-----PVIDADAIAHEV 39 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCC-----EEEEecHHHHHH
Confidence 5899999999999999999987 443 456666654433
No 207
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.80 E-value=0.0089 Score=62.06 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=26.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCce
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDT 382 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t 382 (753)
+++|.+.|.+||||||+|+.|++.|+...+++
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~ 33 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDS 33 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeC
Confidence 46899999999999999999999987544333
No 208
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.80 E-value=0.002 Score=71.97 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=31.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
+|.+|+++|++||||||++.+|.+.|... +++-++
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~i 38 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYY 38 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEE
Confidence 68999999999999999999999999866 666665
No 209
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.79 E-value=0.0024 Score=61.28 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
+|+++|.+||||||++++|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478899999999999999998754
No 210
>PRK07429 phosphoribulokinase; Provisional
Probab=96.75 E-value=0.016 Score=63.91 Aligned_cols=41 Identities=20% Similarity=0.110 Sum_probs=32.3
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
..++++|-++|-+||||||+|+.|++.|+... ..++..|+|
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~--~~vi~~Dd~ 45 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEEL--VTVICTDDY 45 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCc--eEEEEeccc
Confidence 35789999999999999999999999887443 234555655
No 211
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.71 E-value=0.0085 Score=57.02 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=31.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
+++++|-||+||||++.+++..+...+..+..++.+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 47889999999999999999998777777777766544
No 212
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.68 E-value=0.005 Score=56.07 Aligned_cols=38 Identities=32% Similarity=0.305 Sum_probs=30.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
-.++++|.||+||||+++.|+..+...+.....++.+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 47899999999999999999999877654455554443
No 213
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.61 E-value=0.012 Score=66.04 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=38.4
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
.+|.+|.++|.+|+||||++.+|+..|...|.++-+++.|.+|
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 3467999999999999999999999998888888889888886
No 214
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=96.61 E-value=0.0076 Score=59.22 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=71.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh--hcCCceEEEec--cchhhhhcCCCCCCCCCCC-----CCHH----HHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNV--GKYRRLKHGVNQSADFFRA-----DNPE----GMEARN 416 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~--~~gi~t~v~n~--d~yRr~~~g~~~~~~~~~~-----~~~~----~~~~~~ 416 (753)
...+|++-|-|-+|||.||.+++.... |..+..|.|=. -. ++...+ .+|.-+ +..+ .+.-+.
T Consensus 22 ~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp-~~~d~a----~g~~~~~~v~~dg~~~v~v~~gpi~ 96 (205)
T COG3896 22 EGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPP-EQLDLA----RGYTWDSAVEADGLEWVTVHPGPIL 96 (205)
T ss_pred CceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCH-Hhhccc----cccccccccccCCceeeEeechhHH
Confidence 356999999999999999999998764 65544443310 00 111111 111000 0000 011111
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHH
Q 004453 417 EVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 481 (753)
Q Consensus 417 ~vA~~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~ 481 (753)
+.+..-..-.+.-+.++|..+|.|+.-.+++..---.. .-.+++|.|+-+.|++++..+|+.++
T Consensus 97 e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r-~l~g~~v~~VGV~~p~E~~~~Re~rr 160 (205)
T COG3896 97 ELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLR-VLEGCRVWMVGVHVPDEEGARRELRR 160 (205)
T ss_pred HHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHH-HHhCCceEEEEeeccHHHHHHHHhhc
Confidence 22211111122223457999999999877654322222 23478999999999998888888764
No 215
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.52 E-value=0.022 Score=66.91 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=32.1
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
..++++|.+.|.+||||||+|+.|+..+. .+-+++.|+|.
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglLp----~vgvIsmDdy~ 101 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVISMDNYN 101 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhCC----CcEEEEEccee
Confidence 34679999999999999999999998764 24466667764
No 216
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.50 E-value=0.045 Score=59.89 Aligned_cols=93 Identities=24% Similarity=0.362 Sum_probs=65.7
Q ss_pred CCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 004453 347 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM 426 (753)
Q Consensus 347 ~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~ 426 (753)
...+|.+|+|+|..|+||||...+|+++|...|.++-+--.|.+|- . +.++|
T Consensus 135 ~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRA-----------------a-----------AiEQL 186 (340)
T COG0552 135 KEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRA-----------------A-----------AIEQL 186 (340)
T ss_pred cCCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHH-----------------H-----------HHHHH
Confidence 3567999999999999999999999999999998887776666644 1 33444
Q ss_pred HHHHhcCCeEEEEeCCCCCHH--HHHHHHHHHcCCceEEEEEE
Q 004453 427 ISWMHEGGQVGIFDATNSSRK--RRNMLMKMAEGNCKIIFLET 467 (753)
Q Consensus 427 ~~~l~~~G~vVIlDATn~~~~--~R~~l~~l~~~~~~vifIE~ 467 (753)
..|=.+.|..+|--.....+. -.+.+......++.++++.+
T Consensus 187 ~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDT 229 (340)
T COG0552 187 EVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDT 229 (340)
T ss_pred HHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEeC
Confidence 455555677777644444443 34444444666788888764
No 217
>PRK05439 pantothenate kinase; Provisional
Probab=96.48 E-value=0.004 Score=68.02 Aligned_cols=43 Identities=21% Similarity=0.182 Sum_probs=37.2
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhh--cCCceEEEeccch
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 390 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~--~gi~t~v~n~d~y 390 (753)
...|++|-++|-|||||||+|+.|+..|.. .+.++.++..|+|
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 457899999999999999999999998874 3567888888887
No 218
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=96.47 E-value=0.0046 Score=63.67 Aligned_cols=34 Identities=21% Similarity=0.088 Sum_probs=27.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceE
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~ 383 (753)
.|+.|.++|-+||||||+++.|++.++...+++|
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD 38 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCAD 38 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEecc
Confidence 4789999999999999999999987654433333
No 219
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.019 Score=65.13 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=36.2
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHH-hhcCCceEEEeccchhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYL-RWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L-~~~gi~t~v~n~d~yRr 392 (753)
++.+|+++|.+|+||||++.+|+..+ ...|.++-+++.|.||-
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 46799999999999999999999765 45677888888888865
No 220
>PRK13976 thymidylate kinase; Provisional
Probab=96.45 E-value=0.014 Score=60.25 Aligned_cols=28 Identities=32% Similarity=0.512 Sum_probs=25.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhc-C
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWL-G 379 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~-g 379 (753)
++|++-|+-||||||+++.|+++|... |
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g 29 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYG 29 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 379999999999999999999999875 5
No 221
>PRK09169 hypothetical protein; Validated
Probab=96.44 E-value=0.0035 Score=81.19 Aligned_cols=139 Identities=13% Similarity=-0.041 Sum_probs=83.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l 430 (753)
..-|+|+|++|+|||||++.|+..|++..+++|..... ..|... ..+|.... .++ +.+...+.|++
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIek-----s~GrkI-~rIFa~eG--~FR---e~Eaa~V~Dll--- 2175 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAK-----KIGKKI-ARIQALRG--LSP---EQAAARVRDAL--- 2175 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHH-----HhCCCH-HHHHHhcC--chH---HHHHHHHHHHh---
Confidence 45789999999999999999999999888777654321 222111 12222222 111 22222233222
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCCh--------HHHHHHH
Q 004453 431 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF--------EAGLQDF 502 (753)
Q Consensus 431 ~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~--------e~al~df 502 (753)
. ..+|+..........+....+.+.|+ +||+. .+.+.+.+|+.+.. +.|-.... +. ++.++.+
T Consensus 2176 --r-~~vVLSTGGGav~~~enr~~L~~~Gl-vV~L~---an~~tl~~Rty~g~-NRPLL~~~-~~~FEiQFHT~esl~Lk 2246 (2316)
T PRK09169 2176 --R-WEVVLPAEGFGAAVEQARQALGAKGL-RVMRI---NNGFAAPDTTYAGL-NVNLRTAA-GLDFEIQFHTADSLRTK 2246 (2316)
T ss_pred --c-CCeEEeCCCCcccCHHHHHHHHHCCE-EEEEE---CCHHHHHHHhccCC-CCccccCC-CCccchhccHHHHHHHH
Confidence 1 35666766666666666666666775 44554 46678888887653 35555443 43 5666666
Q ss_pred HHHHhccccc
Q 004453 503 KNRLANYEKV 512 (753)
Q Consensus 503 ~~Ri~~y~~~ 512 (753)
.+|...|+++
T Consensus 2247 ~eRhpLYEqv 2256 (2316)
T PRK09169 2247 NKTHKLYEKL 2256 (2316)
T ss_pred HHhHHHHHHh
Confidence 6777777554
No 222
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.019 Score=64.20 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=38.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
++.+|+++|..|+||||++..|+.++...+.++-+++.|.||-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 4679999999999999999999999877788888999998864
No 223
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.036 Score=57.11 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=24.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
..+|++-|.=|+||||||++|+++|+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999977
No 224
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.30 E-value=0.052 Score=58.37 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=28.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
+|.++|-+||||||+++.|+..|+..+ ..++..|+|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL--VTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc--eEEEECccc
Confidence 477899999999999999998886543 345666666
No 225
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.25 E-value=0.06 Score=55.54 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=33.4
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
....++.++|.||+|||++|.+++...-..+.++..++.+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3567999999999999999999998776667777777665
No 226
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=96.24 E-value=0.037 Score=56.64 Aligned_cols=36 Identities=28% Similarity=0.231 Sum_probs=27.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 393 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~ 393 (753)
.+|.++|-+||||||+++.|+. + |+ .+++.|++-+.
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~---g~--~vid~D~i~~~ 37 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-E---GF--LIVDADQVARD 37 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C---CC--eEEeCcHHHHH
Confidence 3799999999999999999986 2 32 46777765443
No 227
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.23 E-value=0.037 Score=56.70 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=31.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
...+++++|-||+||||+|.+++..+...+.++-.++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 46799999999999999999999887766766666643
No 228
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.22 E-value=0.0056 Score=58.25 Aligned_cols=47 Identities=17% Similarity=0.348 Sum_probs=39.1
Q ss_pred hcccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 339 VADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 339 ~~~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
+.+-...+.+.+|+++-+.|-||+|||++|+.|++.|...|.++..+
T Consensus 41 i~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V 87 (127)
T PF06309_consen 41 IKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFV 87 (127)
T ss_pred HHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCce
Confidence 33334445678999999999999999999999999998888888765
No 229
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.20 E-value=0.018 Score=53.03 Aligned_cols=37 Identities=27% Similarity=0.261 Sum_probs=28.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
...++++|-||+|||++++.+++.+...+.....++.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 55 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNA 55 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEeh
Confidence 4478899999999999999999988644444444533
No 230
>CHL00181 cbbX CbbX; Provisional
Probab=96.20 E-value=0.1 Score=56.58 Aligned_cols=31 Identities=35% Similarity=0.440 Sum_probs=26.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCC
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi 380 (753)
.+.-+++.|-||+||||+|+.+++.+...|+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4557899999999999999999998876554
No 231
>PRK13768 GTPase; Provisional
Probab=96.18 E-value=0.011 Score=62.61 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=35.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
+.+|++.|.+|+||||++..++..|...|.++-+++.|.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 468999999999999999999999988899998888764
No 232
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.17 E-value=0.042 Score=55.86 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=30.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
...++.++|.||+|||++|.+++......+.++-.++.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 46799999999999999999998877666666655543
No 233
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.15 E-value=0.022 Score=59.40 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=25.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
.|..++++|.||+||||+|+.|. -++.+++.|.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~ 43 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDM 43 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcC-------CCCEEEeccc
Confidence 46789999999999999998885 2355565543
No 234
>PHA03132 thymidine kinase; Provisional
Probab=96.14 E-value=0.46 Score=56.12 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=26.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
.++|++-|.-|+||||+++.|+++| +.+...+
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~l---g~~Vi~t 288 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGIL---GDNVLVF 288 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh---CCceEEE
Confidence 6789999999999999999999998 4444433
No 235
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.13 E-value=0.019 Score=62.29 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=36.4
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
..+.+|.++|.||+||||+...|+..+...|.++.+++.|..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 357788889999999999999999999888888888877644
No 236
>PLN02840 tRNA dimethylallyltransferase
Probab=96.13 E-value=0.011 Score=67.07 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=26.2
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
..+.+|+++|.+||||||+|..|++.++..
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~ 48 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGE 48 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCC
Confidence 445689999999999999999999998643
No 237
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=96.11 E-value=0.04 Score=56.27 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=26.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 394 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~ 394 (753)
+|.++|-+||||||+++.|++. + ..+++.|++-+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~-g-----~~~i~~D~i~~~~ 36 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEEL-G-----AFGISADRLAKRY 36 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHC-C-----CEEEecchHHHHH
Confidence 5789999999999999988753 2 4456666664433
No 238
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=96.09 E-value=0.02 Score=57.88 Aligned_cols=133 Identities=14% Similarity=0.176 Sum_probs=67.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCC----------CCCCCC--------------C
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS----------ADFFRA--------------D 407 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~----------~~~~~~--------------~ 407 (753)
++|.++|-.||||||+++.|++ ++. .+++.|++-+.+...+.. ..++.+ .
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~-----~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~ 74 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGF-----PVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFS 74 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT------EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTT
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCC-----CEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhc
Confidence 5799999999999999999987 443 446666664443322110 111111 1
Q ss_pred CHHHHHHHHHHHH-HHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhh
Q 004453 408 NPEGMEARNEVAA-LAMEDMISWMHEG--GQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (753)
Q Consensus 408 ~~~~~~~~~~vA~-~~l~d~~~~l~~~--G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~ 484 (753)
+++..+.++.+.. ...+.+.+++... ...+|+|+.-+.... +.. ..+ .+++| .|+ +++..+|+.+|.
T Consensus 75 d~~~~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~---~~~--~~D-~vi~V--~a~-~e~ri~Rl~~R~- 144 (180)
T PF01121_consen 75 DPEKLKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESG---LEK--LCD-EVIVV--YAP-EEIRIKRLMERD- 144 (180)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTT---GGG--GSS-EEEEE--E---HHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhh---Hhh--hhc-eEEEE--ECC-HHHHHHHHHhhC-
Confidence 2333344444333 2333444555533 268888998765431 111 111 34444 464 555556665553
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhcccc
Q 004453 485 QSPDYAEEPDFEAGLQDFKNRLANYEK 511 (753)
Q Consensus 485 ~~pd~~~~~d~e~al~df~~Ri~~y~~ 511 (753)
++ +.++ +.+|+..|..
T Consensus 145 ------~~-~~~~----~~~ri~~Q~~ 160 (180)
T PF01121_consen 145 ------GL-SEEE----AEARIASQMP 160 (180)
T ss_dssp ------TS-THHH----HHHHHHTS--
T ss_pred ------CC-cHHH----HHHHHHhCCC
Confidence 22 4444 4666666543
No 239
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.07 E-value=0.069 Score=55.81 Aligned_cols=116 Identities=17% Similarity=0.308 Sum_probs=72.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHH-------HHH-------HH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEG-------MEA-------RN 416 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~-------~~~-------~~ 416 (753)
|.--+++|.|||||||.+..+.+.|+..|.++.++|.|---..+ .|-...+-.. .+. -.
T Consensus 2 ~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~-------~Y~~~v~I~elit~edvm~~~~LGPNg~l 74 (290)
T KOG1533|consen 2 PFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNL-------PYECAVDIRELITVEDVMEELGLGPNGAL 74 (290)
T ss_pred CcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCC-------CCCCcccHHHHccHHHHHHHhCCCCchhH
Confidence 34568899999999999999999999999999999886442211 0100001000 000 02
Q ss_pred HHHHHHHHHHHHHHhc-----CCeEEEEeCCCC------CHHHHHHHHHHHcCCceEEEEEE----EeCcHH
Q 004453 417 EVAALAMEDMISWMHE-----GGQVGIFDATNS------SRKRRNMLMKMAEGNCKIIFLET----ICNDRD 473 (753)
Q Consensus 417 ~vA~~~l~d~~~~l~~-----~G~vVIlDATn~------~~~~R~~l~~l~~~~~~vifIE~----~c~d~~ 473 (753)
..+.+.++.-++||.+ .+.=+|+|...- .-.-+..++.+.+.+++++-+.. .|+++.
T Consensus 75 ~yc~E~l~~~idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~ 146 (290)
T KOG1533|consen 75 KYCMEYLEANIDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPS 146 (290)
T ss_pred HHHHHHHHhhhHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChH
Confidence 3444555556677642 366788888642 12456667777668888766654 566554
No 240
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.07 E-value=0.041 Score=53.85 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=27.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
=|+++|=||+||||+|.+|+..++-. .++.+++-|
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~-----~i~isd~vk 43 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLE-----YIEISDLVK 43 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCc-----eEehhhHHh
Confidence 58899999999999999999886533 255566644
No 241
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.02 Score=63.47 Aligned_cols=90 Identities=22% Similarity=0.247 Sum_probs=51.8
Q ss_pred ccccccccccccCCCcccchhhhhhcccccCCCCCccE-EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhh
Q 004453 315 IDLKLDTETKNSMPAAAGAVAAAAVADQMLGPKEHRHL-AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 393 (753)
Q Consensus 315 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~ 393 (753)
+||.++..+++-+-|+ +.-+-...+.+.. -.+|+ -|+|+|.||+|||-||++++...+ +-.||+..-
T Consensus 212 ~DIagl~~AK~lL~EA---VvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~-----tTFFNVSss--- 279 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEA---VVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECG-----TTFFNVSSS--- 279 (491)
T ss_pred HhhcchHHHHHHHHHH---HhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhc-----CeEEEechh---
Confidence 4566664444444332 2222223333322 12454 789999999999999999998754 555655211
Q ss_pred hcCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 004453 394 KHGVNQSADFFRADNPEGMEARNEVAAL 421 (753)
Q Consensus 394 ~~g~~~~~~~~~~~~~~~~~~~~~vA~~ 421 (753)
.-..=++.+.++.++.+.++|+.
T Consensus 280 -----tltSKwRGeSEKlvRlLFemARf 302 (491)
T KOG0738|consen 280 -----TLTSKWRGESEKLVRLLFEMARF 302 (491)
T ss_pred -----hhhhhhccchHHHHHHHHHHHHH
Confidence 00011344677777777777764
No 242
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.04 E-value=0.03 Score=57.33 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=31.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
.+..|+++|-||+||||+|+++++++...+.+...++..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 456899999999999999999999987666666666543
No 243
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.00 E-value=0.023 Score=49.68 Aligned_cols=54 Identities=22% Similarity=0.481 Sum_probs=45.0
Q ss_pred EEEEEEEecccCCCceEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEEe
Q 004453 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLK 96 (753)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~ 96 (753)
.|+|++.||. ...+.|.|+-. +|+ .++|++...+.|++++.+++. ..+|||++-
T Consensus 3 ~vtf~~~ap~---a~~V~v~G~fn---~W~---~~~m~~~~~G~w~~~~~l~~G--~y~Ykf~vd 56 (82)
T cd02861 3 PVVFAYRGPE---ADSVYLAGSFN---NWN---AIPMEREGDGLWVVTVELRPG--RYEYKFVVD 56 (82)
T ss_pred cEEEEEECCC---CCEEEEEeECC---CCC---cccCEECCCCcEEEEEeCCCC--cEEEEEEEC
Confidence 5899999994 37899998755 787 689999888999999998774 479999984
No 244
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.00 E-value=0.14 Score=53.13 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=32.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc-CCceEEEecc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVG 388 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~-gi~t~v~n~d 388 (753)
..-+++++|.||+|||+++.+++..+-.. +.++-.|+.+
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 45699999999999999999998777655 8888888765
No 245
>PLN02796 D-glycerate 3-kinase
Probab=95.98 E-value=0.0088 Score=66.06 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=35.0
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
.+|++|.++|.+||||||+++.|...|...+.++-.+..|++
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 478999999999999999999999998766666666655554
No 246
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.11 Score=58.63 Aligned_cols=44 Identities=30% Similarity=0.351 Sum_probs=37.5
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhh----cCCceEEEeccchhh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW----LGHDTKHFNVGKYRR 392 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~----~gi~t~v~n~d~yRr 392 (753)
..|.+|+++|.+|+||||++.+|+.++.. .+.++-+++.|.||-
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 45789999999999999999999998863 467888899998864
No 247
>PRK06893 DNA replication initiation factor; Validated
Probab=95.97 E-value=0.1 Score=54.49 Aligned_cols=35 Identities=9% Similarity=0.017 Sum_probs=29.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
.++++|-||+||||++++++..+...+.++..++.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 68999999999999999999998777766655544
No 248
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=95.88 E-value=0.12 Score=55.64 Aligned_cols=120 Identities=16% Similarity=0.235 Sum_probs=64.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~~ 432 (753)
+||++||+|+||||-.+.|+. +++.. .|++ -.. .+.+++..+... --..
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED-~Gy~c-------vDNl-----------------P~~---Ll~~l~~~~~~~---~~~~ 51 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALED-LGYYC-------VDNL-----------------PPS---LLPQLIELLAQS---NSKI 51 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHh-cCeeE-------EcCC-----------------cHH---HHHHHHHHHHhc---CCCC
Confidence 799999999999998888874 33321 1222 111 112222221110 0001
Q ss_pred CCeEEEEeCCCCCH--HHHHHHHHH--HcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHh
Q 004453 433 GGQVGIFDATNSSR--KRRNMLMKM--AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (753)
Q Consensus 433 ~G~vVIlDATn~~~--~~R~~l~~l--~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~ 507 (753)
....+++|.-+..- +.-+.+.++ ....++++|+| |+++.+++|--+.|. .-|--.+. ...++++.=.+.++
T Consensus 52 ~~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLd--A~d~~LirRy~eTRR-~HPL~~~~-~~le~I~~Er~~L~ 126 (284)
T PF03668_consen 52 EKVAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLD--ASDEVLIRRYSETRR-RHPLSSDG-SLLEAIEKERELLE 126 (284)
T ss_pred ceEEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEE--CChHHHHHHHHhccC-CCCCCCCC-CcHHHHHHHHHHHH
Confidence 25577788887642 233444445 34466777877 777777777666653 35655544 34455444444443
No 249
>PF13173 AAA_14: AAA domain
Probab=95.87 E-value=0.059 Score=50.78 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=51.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 431 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~ 431 (753)
.++++.|..++||||+++++++.+. ..-+.-.++.++.+-.. ... .++....++ ...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~-----------------~~~-~~~~~~~~~----~~~ 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRR-----------------LAD-PDLLEYFLE----LIK 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHH-----------------Hhh-hhhHHHHHH----hhc
Confidence 4889999999999999999998865 22233345444442200 000 001111111 112
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHc
Q 004453 432 EGGQVGIFDATNSSRKRRNMLMKMAE 457 (753)
Q Consensus 432 ~~G~vVIlDATn~~~~~R~~l~~l~~ 457 (753)
++...+++|-....+.....++.+.+
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d 85 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVD 85 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHH
Confidence 24678999999888888888888843
No 250
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.84 E-value=0.089 Score=55.12 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=31.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
.++++|.||+||||++++++..+...+.++..++.++
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 6899999999999999999998887777777666543
No 251
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.82 E-value=0.11 Score=60.10 Aligned_cols=151 Identities=21% Similarity=0.186 Sum_probs=70.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCce-EEEec-cchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDT-KHFNV-GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t-~v~n~-d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~ 428 (753)
+-.++|+|-||+||||+|+.|++.|.-..... ...+. ..-+....+...+-..++......+....++...+.. .
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~---~ 116 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKF---A 116 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHh---h
Confidence 45799999999999999999999986421110 00000 0011111121111111111111112211111111100 0
Q ss_pred HHhcCCeEEEEeCCCC-CHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 004453 429 WMHEGGQVGIFDATNS-SRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (753)
Q Consensus 429 ~l~~~G~vVIlDATn~-~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri 506 (753)
-......++|+|-... +.+.-+.+.+. .+....++||= .|+....+...|..|-. .=++... + ...+..+.+++
T Consensus 117 p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFIL-aTte~~kI~~TI~SRCq-~~~f~~l-s-~~~i~~~L~~i 192 (484)
T PRK14956 117 PMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFIL-ATTEFHKIPETILSRCQ-DFIFKKV-P-LSVLQDYSEKL 192 (484)
T ss_pred hhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEe-ecCChhhccHHHHhhhh-eeeecCC-C-HHHHHHHHHHH
Confidence 0112246999997765 44444444444 44445667763 45555555566665532 2344443 3 33344555555
Q ss_pred hc
Q 004453 507 AN 508 (753)
Q Consensus 507 ~~ 508 (753)
-.
T Consensus 193 ~~ 194 (484)
T PRK14956 193 CK 194 (484)
T ss_pred HH
Confidence 43
No 252
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.82 E-value=0.012 Score=66.43 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=35.8
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
..+|++|-+.|.+||||||+++.|...|...+.++-+++.|++
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf 251 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDF 251 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence 3479999999999999999999999888766666777766655
No 253
>PRK12377 putative replication protein; Provisional
Probab=95.78 E-value=0.043 Score=58.20 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=34.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
.-++|.|-||+|||+||.+|+..|...|..+..++..++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 47899999999999999999999988888887776655533
No 254
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.76 E-value=0.1 Score=55.33 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=25.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcC
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~g 379 (753)
...-+++.|.||+||||+|+.+++.|...+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 445688999999999999999999886544
No 255
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.76 E-value=0.014 Score=63.33 Aligned_cols=43 Identities=21% Similarity=0.204 Sum_probs=34.0
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhc--CCceEEEeccch
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 390 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~--gi~t~v~n~d~y 390 (753)
...|.+|-+.|.+||||||+|+.|...+... +.++.+++.|.|
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f 103 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF 103 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence 4578999999999999999999999888632 335666666654
No 256
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.75 E-value=0.013 Score=63.14 Aligned_cols=42 Identities=33% Similarity=0.362 Sum_probs=36.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc-C-CceEEEeccchh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-G-HDTKHFNVGKYR 391 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~-g-i~t~v~n~d~yR 391 (753)
++.+|+|+|.+|+||||++.+|+.++... | .++-+++.|.||
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 56799999999999999999999998765 4 788889888775
No 257
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=95.74 E-value=0.022 Score=61.50 Aligned_cols=46 Identities=20% Similarity=0.154 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCC-------CCCEEEEcCcHHHHHHHHHh
Q 004453 581 DTILSDAGEIYAKKLANFVEKRLKSE-------RAASIWTSTLQRTILTASPI 626 (753)
Q Consensus 581 D~pLTe~G~~QA~~La~~L~~~l~~~-------~~~~V~tSpl~RaiqTA~~i 626 (753)
...||+.|.+|...+|+++.+++... ..-.|++|...||++||+.+
T Consensus 60 ~g~LT~~G~~q~~~lG~~lr~~Y~~l~~~~~~~~~v~vrSt~~~Rt~~Sa~af 112 (347)
T PF00328_consen 60 WGQLTPRGMEQHYQLGKRLRERYPGLFPDNYNPEQVYVRSTNKQRTIQSAQAF 112 (347)
T ss_dssp TTSBTHHHHHHHHHHHHHHHHHHHTSSTSSS-TTTEEEEEESSHHHHHHHHHH
T ss_pred CCcccchhhhHHHHHHHHHHHHHHHhccccccccceeEEEeccchHHHHHHHH
Confidence 33599999999999999999886532 23468999999999999988
No 258
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.74 E-value=0.12 Score=61.53 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=25.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
-+-.++|+|.||+||||+|+.|++.|..
T Consensus 36 l~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 36 LHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3568999999999999999999999874
No 259
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=95.73 E-value=0.19 Score=51.47 Aligned_cols=115 Identities=13% Similarity=0.132 Sum_probs=61.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCC--------------------------CCCCC
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--------------------------ADFFR 405 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~--------------------------~~~~~ 405 (753)
++|-++|--||||||+++.+. .++.. ++|+|..-|....++.+ .-+|.
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~-----vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~ 75 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIP-----VIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFS 75 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCc-----EecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhC
Confidence 477889999999999999888 33333 34555443332221110 11222
Q ss_pred CCCH-HHHHH--HHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHH
Q 004453 406 ADNP-EGMEA--RNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIR 480 (753)
Q Consensus 406 ~~~~-~~~~~--~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~ 480 (753)
+... ..... .-.+..+.++++..++..+-.++|+|..-+ ++..-..+-..-+-++|+.+.-++|-++
T Consensus 76 ~~~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLL--------FE~~~~~~~~~tvvV~cd~~~Ql~Rl~~ 145 (225)
T KOG3220|consen 76 DPKKRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLL--------FEAKLLKICHKTVVVTCDEELQLERLVE 145 (225)
T ss_pred CHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHH--------HHHhHHhheeeEEEEEECcHHHHHHHHH
Confidence 2111 11111 124566777778888888778889997543 3331111122234458965555554443
No 260
>PRK04296 thymidine kinase; Provisional
Probab=95.68 E-value=0.054 Score=54.91 Aligned_cols=35 Identities=14% Similarity=0.050 Sum_probs=30.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEe
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n 386 (753)
.+++++|-||+||||++..++..+...+.++.++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 58899999999999999999888876777777774
No 261
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.67 E-value=0.015 Score=58.10 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
+|+++|-||||||++|.+|+..++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 689999999999999999998764
No 262
>PRK09087 hypothetical protein; Validated
Probab=95.67 E-value=0.059 Score=56.26 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=58.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhh-cCCCCC----C--CCCCCCCHHHHHHHHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK-HGVNQS----A--DFFRADNPEGMEARNEVAALAMED 425 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~-~g~~~~----~--~~~~~~~~~~~~~~~~vA~~~l~d 425 (753)
.++++|-+||||||+++++++..+.. .++.++..... ...... + ++. ...++ .+-.
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~l~iDDi~~~-~~~~~-----------~lf~ 108 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL-----LIHPNEIGSDAANAAAEGPVLIEDIDAG-GFDET-----------GLFH 108 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE-----EecHHHcchHHHHhhhcCeEEEECCCCC-CCCHH-----------HHHH
Confidence 57999999999999999999765432 23221111100 000000 0 111 11221 1333
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHH---HcCCceEEEEEEEeCcHHHHHHHHHHhhh
Q 004453 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKM---AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (753)
Q Consensus 426 ~~~~l~~~G~vVIlDATn~~~~~R~~l~~l---~~~~~~vifIE~~c~d~~~i~rni~~r~~ 484 (753)
++..+.+.|..+|+.++..-.+......++ .+.+ ..+++.-.+++.+.+-++++..
T Consensus 109 l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~g---l~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 109 LINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA---TVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred HHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCC---ceeecCCCCHHHHHHHHHHHHH
Confidence 444455578888888887655544333333 2222 3455555666666666655544
No 263
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.67 E-value=0.01 Score=62.43 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=28.1
Q ss_pred EEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 356 LVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 356 mvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
++|.|||||||+++.+.+++...+.++.++|.|--
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchH
Confidence 47999999999999999999999999999998744
No 264
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.67 E-value=0.041 Score=53.83 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=18.1
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 004453 354 IVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~ 374 (753)
|+++|-||+|||||++.|+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 265
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.64 E-value=0.017 Score=58.08 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=30.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
.+.+|.++|.+||||||+++.|.+.|...|.++-++
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~I 40 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEE
Confidence 456999999999999999999999998777666555
No 266
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.63 E-value=0.023 Score=62.11 Aligned_cols=28 Identities=39% Similarity=0.443 Sum_probs=25.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
.+.+|+++|.+|||||++|..|++.++.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~ 30 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNG 30 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 3579999999999999999999998753
No 267
>PLN02772 guanylate kinase
Probab=95.62 E-value=0.19 Score=56.66 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=24.5
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
+....+||++|.+|+||+||.++|.+.+.
T Consensus 132 ~~~~k~iVlsGPSGvGKsTL~~~L~~~~p 160 (398)
T PLN02772 132 GNAEKPIVISGPSGVGKGTLISMLMKEFP 160 (398)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhhhcc
Confidence 33556999999999999999999987653
No 268
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.61 E-value=0.07 Score=56.51 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=62.6
Q ss_pred ccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhhc-CCceEEEeccc----hhhhhcCCCCCCCCCCCC--CHHHHH
Q 004453 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGK----YRRLKHGVNQSADFFRAD--NPEGME 413 (753)
Q Consensus 341 ~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~-gi~t~v~n~d~----yRr~~~g~~~~~~~~~~~--~~~~~~ 413 (753)
|.+.+... ..-++++.|-||+||||++.+++..+-.. |.++-.++.+. +.+.+........+.... .....+
T Consensus 21 d~~~gG~~-~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 99 (271)
T cd01122 21 NKLTKGLR-KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRLHLPDTVFIYTLE 99 (271)
T ss_pred eeeeEEEc-CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCCcccCCccccccHH
Confidence 44444222 34488999999999999999998877554 77887777642 222111100001111000 000001
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCCCC-C-HHHHHHHHHH-HcCCceEEEEE
Q 004453 414 ARNEVAALAMEDMISWMHEGGQVGIFDATNS-S-RKRRNMLMKM-AEGNCKIIFLE 466 (753)
Q Consensus 414 ~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~-~-~~~R~~l~~l-~~~~~~vifIE 466 (753)
+ ++..++.+.+.+...|+|.... + .+..+.++.+ .++++++++|.
T Consensus 100 ---~-----~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID 147 (271)
T cd01122 100 ---E-----FDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIID 147 (271)
T ss_pred ---H-----HHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEC
Confidence 1 1111222333567777776543 3 3445555555 56788998886
No 269
>PHA00729 NTP-binding motif containing protein
Probab=95.60 E-value=0.015 Score=60.78 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
..-|+++|-||+||||+|.+|++.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999875
No 270
>PLN03025 replication factor C subunit; Provisional
Probab=95.56 E-value=0.1 Score=57.02 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.2
Q ss_pred EEEEccCCCCHHHHHHHHHHHHh
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
++++|-||+||||+|+.+++.+.
T Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 67899999999999999999874
No 271
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.52 E-value=0.14 Score=60.93 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=25.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
-+-.++|+|-+|+||||+|+.|++.|..
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3568899999999999999999999874
No 272
>PRK08727 hypothetical protein; Validated
Probab=95.52 E-value=0.2 Score=52.34 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=31.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
.|+++|-+|+|||+++++++..+...+.++..++..+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 4999999999999999999999887787777765533
No 273
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.50 E-value=0.038 Score=51.34 Aligned_cols=38 Identities=29% Similarity=0.315 Sum_probs=25.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc-----CCceEEEec
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-----GHDTKHFNV 387 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~-----gi~t~v~n~ 387 (753)
++.+++++|-||+|||++++.+.+.+... ..++..++.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNC 45 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEe
Confidence 45689999999999999999999988643 444444444
No 274
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.49 E-value=0.032 Score=58.27 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=25.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
-++|.|.||.||||+|+.|+..++ .+...++.
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~---~~~~~~sg 83 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELG---VNFKITSG 83 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT-----EEEEEC
T ss_pred eEEEECCCccchhHHHHHHHhccC---CCeEeccc
Confidence 689999999999999999999865 34445544
No 275
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.48 E-value=0.13 Score=62.55 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=26.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceE
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~ 383 (753)
+|.+.|.|||||||+|+.|++.|++..+++-
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g 33 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTG 33 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecC
Confidence 7899999999999999999999987654443
No 276
>PLN02748 tRNA dimethylallyltransferase
Probab=95.48 E-value=0.034 Score=63.94 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=54.7
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc---chhhhhcCCCC----------C--CCCCCCCCHHHH
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG---KYRRLKHGVNQ----------S--ADFFRADNPEGM 412 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d---~yRr~~~g~~~----------~--~~~~~~~~~~~~ 412 (753)
...+.+|+++|.+|||||+||..|++.++ ..++|.| -||-+-.|... . .++-+....-.+
T Consensus 19 ~~~~~~i~i~GptgsGKs~la~~la~~~~-----~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv 93 (468)
T PLN02748 19 KGKAKVVVVMGPTGSGKSKLAVDLASHFP-----VEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTA 93 (468)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcC-----eeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcH
Confidence 34566899999999999999999999865 4456655 24433222211 0 123333333334
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCH
Q 004453 413 EARNEVAALAMEDMISWMHEGGQVGIFDATNSSR 446 (753)
Q Consensus 413 ~~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~ 446 (753)
....+.|..+++++ +.++...+|+-+|+..-
T Consensus 94 ~~F~~~A~~~I~~I---~~rgk~PIlVGGTglYi 124 (468)
T PLN02748 94 KDFRDHAVPLIEEI---LSRNGLPVIVGGTNYYI 124 (468)
T ss_pred HHHHHHHHHHHHHH---HhcCCCeEEEcChHHHH
Confidence 44455555555533 23456688888888643
No 277
>PRK08181 transposase; Validated
Probab=95.47 E-value=0.058 Score=57.92 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=32.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
.-++|+|-||+|||+||.+|+..+...|.++..++..++
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L 145 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDL 145 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHH
Confidence 359999999999999999999988877887777765444
No 278
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.45 E-value=0.049 Score=57.64 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=33.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
..++|+|-||+|||++|.+|+.+|...+.++.+++..++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l 138 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI 138 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH
Confidence 378999999999999999999999888888877776554
No 279
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.44 E-value=0.098 Score=63.14 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
-+-.++|+|-+|+||||+|+.|++.|..
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3557889999999999999999999874
No 280
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.44 E-value=0.013 Score=65.13 Aligned_cols=30 Identities=30% Similarity=0.288 Sum_probs=26.6
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
..++.+++|+|.||+||||+|++|++.|+.
T Consensus 75 ~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 75 EERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345679999999999999999999999875
No 281
>PRK05642 DNA replication initiation factor; Validated
Probab=95.43 E-value=0.09 Score=55.07 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=31.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
-.++++|-+|+|||+|+++++..+...+.++..++.+++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~ 84 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL 84 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence 357899999999999999999887766777776765443
No 282
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.42 E-value=0.17 Score=57.14 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=25.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
-+-.++|+|.||+||||+|+.+++.|..
T Consensus 37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 37 VGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567999999999999999999999865
No 283
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.40 E-value=0.18 Score=62.03 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=25.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
-+-.++|+|-||+||||+|+.|++.|..
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 3567899999999999999999999864
No 284
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.40 E-value=0.018 Score=56.69 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=30.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
+|+++|.+||||||++.+|.+.|...|.++-++
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 578999999999999999999998888888777
No 285
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.40 E-value=0.017 Score=57.08 Aligned_cols=110 Identities=25% Similarity=0.301 Sum_probs=60.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhh--hcC-----CC-C------CCCCCCCC-CHH--HHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL--KHG-----VN-Q------SADFFRAD-NPE--GME 413 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~--~~g-----~~-~------~~~~~~~~-~~~--~~~ 413 (753)
++=|.++|.||+||||++.+|+..|...|++.-=|-..++|+- +.| +. . ..++.... ... ..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~ 84 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVE 84 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHH
Confidence 4568999999999999999999999877665543433444431 011 00 0 11111110 000 022
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCCCC----CHHHHHHHHHHHcCCceEEE
Q 004453 414 ARNEVAALAMEDMISWMHEGGQVGIFDATNS----SRKRRNMLMKMAEGNCKIIF 464 (753)
Q Consensus 414 ~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~----~~~~R~~l~~l~~~~~~vif 464 (753)
.+++++..+++.++ +.-.++|+|-..+ ++..++.+.+..+.+-++++
T Consensus 85 ~le~i~~~al~rA~----~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kplia 135 (179)
T COG1618 85 GLEEIAIPALRRAL----EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIA 135 (179)
T ss_pred HHHHHhHHHHHHHh----hcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEE
Confidence 23334433333111 1358999999866 45667777777554444433
No 286
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.39 E-value=0.14 Score=57.41 Aligned_cols=42 Identities=31% Similarity=0.369 Sum_probs=33.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh-hcC-CceEEEeccchh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLG-HDTKHFNVGKYR 391 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~-~~g-i~t~v~n~d~yR 391 (753)
++-+|+|+|.+|+||||++.+|+..+. ..| .++-++..|.||
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 456899999999999999999998764 334 466778888885
No 287
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.36 E-value=0.02 Score=60.84 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=39.1
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
.++|.+|+.+|+.||||||+.++|..+|....-+.+++|.|--
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPA 58 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPA 58 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHH
Confidence 4679999999999999999999999999998888999999844
No 288
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.31 E-value=0.026 Score=52.90 Aligned_cols=36 Identities=33% Similarity=0.381 Sum_probs=31.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
|+++|.+|+||||++..|+++|...+.++-+++.|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 789999999999999999999988888888887653
No 289
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.29 E-value=0.17 Score=50.03 Aligned_cols=36 Identities=22% Similarity=0.121 Sum_probs=29.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
++++.|-||+|||++|.+++...-..|.++-.++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 378899999999999999987766677777777664
No 290
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.29 E-value=0.023 Score=49.10 Aligned_cols=34 Identities=32% Similarity=0.303 Sum_probs=29.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEe
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n 386 (753)
+++++|.+|+||||++..|++.|...|.++-+++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4788999999999999999999988888877664
No 291
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=95.28 E-value=0.72 Score=49.45 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=33.9
Q ss_pred hcccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcC
Q 004453 339 VADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (753)
Q Consensus 339 ~~~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~g 379 (753)
+.|..+.+.+....||++-|--|+|||++|++|++.|+...
T Consensus 59 l~Dktskrf~enSkvI~VeGnI~sGK~klAKelAe~Lgf~h 99 (393)
T KOG3877|consen 59 LKDKTSKRFHENSKVIVVEGNIGSGKTKLAKELAEQLGFVH 99 (393)
T ss_pred hcchhhhhhcccceEEEEeCCcccCchhHHHHHHHHhCCcc
Confidence 33555656677888999999999999999999999998543
No 292
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.28 E-value=0.16 Score=50.61 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=22.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.-+++++|-||+||||++..|+..+.
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34899999999999999999988774
No 293
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.27 E-value=0.055 Score=60.36 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=42.3
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALA 422 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~ 422 (753)
...|..+.+.|.||+|||.+|++++..++ +....++.+++ . ..|. .+.++.++.+.+.|+..
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg---~~~i~vsa~eL---~------sk~v-GEsEk~IR~~F~~A~~~ 206 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMG---IEPIVMSAGEL---E------SENA-GEPGKLIRQRYREAADI 206 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcC---CCeEEEEHHHh---h------cCcC-CcHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999854 55666766544 1 1121 23555566555555543
No 294
>PRK05973 replicative DNA helicase; Provisional
Probab=95.27 E-value=0.033 Score=58.68 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=32.2
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
+.-++++.|-||+|||++|.+++...-..|.++..|+.+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 455999999999999999999988765667777777654
No 295
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.02 Score=62.15 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=24.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-..+|+++|.||+|||+++++|+++|.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 456999999999999999999999986
No 296
>PRK13695 putative NTPase; Provisional
Probab=95.26 E-value=0.18 Score=50.04 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=24.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~ 381 (753)
-|+++|.||+||||+++.|...+...|+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~ 30 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYK 30 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 48899999999999999998887644554
No 297
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=95.26 E-value=0.069 Score=64.30 Aligned_cols=33 Identities=27% Similarity=0.257 Sum_probs=27.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceE
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~ 383 (753)
..+|.+.|.+||||||+|+.|++.|++..+++.
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~ 474 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSG 474 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHH
Confidence 447888999999999999999999887654443
No 298
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.17 E-value=0.31 Score=55.32 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-++|+|.||+||||+|+.|++.++
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 577899999999999999998864
No 299
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.14 E-value=0.27 Score=53.23 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=24.8
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
+.-|-+++++|.||+||||+|+++++.++
T Consensus 40 ~~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 40 GRIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 33567888899999999999999998763
No 300
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.07 E-value=0.18 Score=57.56 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=36.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh--hcCCceEEEeccchhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKYRR 392 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~--~~gi~t~v~n~d~yRr 392 (753)
+.+|+++|.+|+||||++.+|+.++. ..+.++-+++.|.||-
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~ 264 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI 264 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence 34899999999999999999998886 4567888999999863
No 301
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.04 E-value=0.19 Score=58.62 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=24.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
+-.++|+|.||+||||+|+.+++.|.-
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 457999999999999999999999863
No 302
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.03 E-value=0.033 Score=55.14 Aligned_cols=34 Identities=29% Similarity=0.232 Sum_probs=30.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
.+|.++|.+||||||++.+|.+.|...|.++-++
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~i 35 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVI 35 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 3789999999999999999999999888777666
No 303
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.02 E-value=0.2 Score=51.06 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
+|+++|.+||||||+.++|.+++...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~ 28 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN 28 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 79999999999999999999888643
No 304
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.02 E-value=0.031 Score=52.96 Aligned_cols=30 Identities=40% Similarity=0.602 Sum_probs=24.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhhcCCceEEEe
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n 386 (753)
|+++|-||+|||++|+.|++.+ +.+...++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~ 31 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GRPVIRIN 31 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hcceEEEE
Confidence 7899999999999999999997 34444443
No 305
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.01 E-value=0.17 Score=50.22 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=57.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc--------chhhhhcCCCCCCCCCCCC-C----HHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG--------KYRRLKHGVNQSADFFRAD-N----PEGMEARNE 417 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d--------~yRr~~~g~~~~~~~~~~~-~----~~~~~~~~~ 417 (753)
.-++.++|..|+||||+.+.|+..+.-..-. ..++.. .+|+...-..+...++... . ..+.+++..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~ 106 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRPTSGR-VRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLG 106 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCCe-EEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHH
Confidence 3489999999999999999999876422111 122221 1222111112222333321 0 112334445
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCCC--CHHHHHHHHHH----HcCCceEEEE
Q 004453 418 VAALAMEDMISWMHEGGQVGIFDATNS--SRKRRNMLMKM----AEGNCKIIFL 465 (753)
Q Consensus 418 vA~~~l~d~~~~l~~~G~vVIlDATn~--~~~~R~~l~~l----~~~~~~vifI 465 (753)
+|+..+. .-.++|+|-... ....|+.+.++ .+.+..++++
T Consensus 107 la~al~~--------~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~ 152 (173)
T cd03246 107 LARALYG--------NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVI 152 (173)
T ss_pred HHHHHhc--------CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 5555444 788999997754 55556655554 3345555544
No 306
>PRK04195 replication factor C large subunit; Provisional
Probab=95.01 E-value=0.11 Score=60.35 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=29.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
+..++++|.||+||||+|++|++.++ .....+|..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~---~~~ielnasd~ 75 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG---WEVIELNASDQ 75 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEccccc
Confidence 56899999999999999999999864 45555665544
No 307
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.98 E-value=0.23 Score=55.40 Aligned_cols=27 Identities=37% Similarity=0.358 Sum_probs=24.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-+-.++++|.||+||||+|+.+++.|.
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 456789999999999999999999985
No 308
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.96 E-value=0.15 Score=55.21 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=39.8
Q ss_pred hhhcccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 337 AAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 337 ~~~~~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
.++.+..... -.++.+|=++|.||+||||+--+|.+.|...|+++-++..|
T Consensus 38 ~~ll~~l~p~-tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVD 88 (323)
T COG1703 38 RELLRALYPR-TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVD 88 (323)
T ss_pred HHHHHHHhhc-CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEEC
Confidence 3444443322 23567999999999999999999999999999999888654
No 309
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=94.95 E-value=0.027 Score=60.97 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
+|+++|.+|||||++|..|++.++.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~ 25 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNA 25 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCC
Confidence 5899999999999999999998753
No 310
>PLN02422 dephospho-CoA kinase
Probab=94.91 E-value=0.12 Score=54.44 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=26.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
+|.++|-+||||||+++.|++ + | ..+++.|++-+
T Consensus 3 ~igltG~igsGKstv~~~l~~-~---g--~~~idaD~~~~ 36 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFKS-S---G--IPVVDADKVAR 36 (232)
T ss_pred EEEEECCCCCCHHHHHHHHHH-C---C--CeEEehhHHHH
Confidence 689999999999999999984 2 3 23566666544
No 311
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.90 E-value=0.077 Score=60.11 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=24.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
...|+++|-+|||||||+++|+++++..
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 4579999999999999999999986543
No 312
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=94.89 E-value=0.34 Score=51.86 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.|.++|.+|+|||||+.+|....+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g 27 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGG 27 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999986543
No 313
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.89 E-value=0.26 Score=46.48 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
+..|+++|.||+||||+...|...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999988643
No 314
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.86 E-value=0.065 Score=61.31 Aligned_cols=27 Identities=41% Similarity=0.551 Sum_probs=23.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
+.-|+++|.||+|||++|++|+..+..
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 347788999999999999999998853
No 315
>PRK06620 hypothetical protein; Validated
Probab=94.86 E-value=0.097 Score=54.22 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=21.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-.++++|-||+||||++++++...+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 4689999999999999999887754
No 316
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=94.85 E-value=0.082 Score=46.11 Aligned_cols=52 Identities=17% Similarity=0.473 Sum_probs=42.2
Q ss_pred EEEEEEecccCCCceEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEEe
Q 004453 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLK 96 (753)
Q Consensus 33 v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~ 96 (753)
|+|+..+ ....+.|+|+=. +|++ .++|...... |.+.+++|+. ..+|||++-
T Consensus 4 v~f~~~~----~a~~V~v~G~F~---~W~~--~~pm~~~~~~-~~~~~~L~~g--~y~YkF~Vd 55 (79)
T cd02859 4 TTFVWPG----GGKEVYVTGSFD---NWKK--KIPLEKSGKG-FSATLRLPPG--KYQYKFIVD 55 (79)
T ss_pred EEEEEcC----CCcEEEEEEEcC---CCCc--cccceECCCC-cEEEEEcCCC--CEEEEEEEC
Confidence 5666666 568999999875 7987 6999998766 9999999884 579999983
No 317
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.84 E-value=0.18 Score=53.68 Aligned_cols=86 Identities=17% Similarity=0.209 Sum_probs=55.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~ 429 (753)
++.=+++.|-||+|||+||.+|+..|-..|+++..+..-+.=+.+.. .+ ...+. ..++.+. +
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~-----~~-~~~~~-----~~~l~~~-l------ 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA-----AF-DEGRL-----EEKLLRE-L------ 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH-----HH-hcCch-----HHHHHHH-h------
Confidence 45678999999999999999999999977999998876444221110 00 00000 0011111 1
Q ss_pred HhcCCeEEEEeCCCCCH---HHHHHHHHH
Q 004453 430 MHEGGQVGIFDATNSSR---KRRNMLMKM 455 (753)
Q Consensus 430 l~~~G~vVIlDATn~~~---~~R~~l~~l 455 (753)
..-.+.|+|.....+ ..+..+.++
T Consensus 166 --~~~dlLIiDDlG~~~~~~~~~~~~~q~ 192 (254)
T COG1484 166 --KKVDLLIIDDIGYEPFSQEEADLLFQL 192 (254)
T ss_pred --hcCCEEEEecccCccCCHHHHHHHHHH
Confidence 146899999998744 467777775
No 318
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.84 E-value=0.19 Score=53.09 Aligned_cols=109 Identities=15% Similarity=0.088 Sum_probs=64.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc-CCceEEEeccchhhhh--------cCCCCCCCCCCCCCHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKYRRLK--------HGVNQSADFFRADNPEGMEARNEVAA 420 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~-gi~t~v~n~d~yRr~~--------~g~~~~~~~~~~~~~~~~~~~~~vA~ 420 (753)
..-|+++.|.||.|||++|..++..+... +.++-.|+.+.-.+.. .+.....-....-+++.++...+.
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~-- 95 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQAA-- 95 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHH--
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHH--
Confidence 35699999999999999999999988765 5888888885322211 111110000011122223322222
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-Hc-CCceEEEEEE
Q 004453 421 LAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AE-GNCKIIFLET 467 (753)
Q Consensus 421 ~~l~d~~~~l~~~G~vVIlDATn~~~~-~R~~l~~l-~~-~~~~vifIE~ 467 (753)
..++. .....|.|....+.+ -++.++.+ .+ .++.++||.-
T Consensus 96 ------~~~l~-~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDy 138 (259)
T PF03796_consen 96 ------AEKLS-DLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDY 138 (259)
T ss_dssp ------HHHHH-TSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred ------HHHHh-hCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEech
Confidence 22333 345788887776665 56666666 44 7888999973
No 319
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.82 E-value=0.2 Score=53.03 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=24.5
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
....+|.++|.+|.||||+|+++++...
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~ 44 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLR 44 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccc
Confidence 4577999999999999999999997743
No 320
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.81 E-value=0.019 Score=57.33 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
+|+++|-||+||||+|++|. .|++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~ 25 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGY 25 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCC
Confidence 78999999999999999999 6443
No 321
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.81 E-value=0.35 Score=56.02 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
-|-.++|+|.||+||||+|+.+++.|.-
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3457899999999999999999998863
No 322
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.81 E-value=0.032 Score=56.15 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=33.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
+.-++|.|-||+|||++|.+++..+-..|..+..++..++-.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~ 88 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLD 88 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceec
Confidence 446999999999999999999999988999999998766544
No 323
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.75 E-value=0.4 Score=51.61 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=35.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
++-.|+++|.+|+||||+++.|+..+...+.+.-+++.|.+|
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 345899999999999999999999887667778788888776
No 324
>PRK08116 hypothetical protein; Validated
Probab=94.74 E-value=0.19 Score=53.91 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=33.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
..-++|.|-||+|||+||.+++.+|...+..+..++..++
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~l 153 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQL 153 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 3468999999999999999999999877888777776553
No 325
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.73 E-value=0.15 Score=55.69 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=34.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
+.-++|.|-||+|||+||.+|+..|...|+++..++..++
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l 195 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEF 195 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHH
Confidence 3468999999999999999999999988999888866543
No 326
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.67 E-value=0.029 Score=62.61 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
=.||-|.||+||||||+.|+..++.
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~ 74 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNA 74 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCC
Confidence 4678899999999999999998764
No 327
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.65 E-value=0.32 Score=57.90 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=24.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
+-.++|+|-||+||||+|+.|++.|.-
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccc
Confidence 458999999999999999999999863
No 328
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.64 E-value=0.3 Score=58.71 Aligned_cols=28 Identities=36% Similarity=0.361 Sum_probs=25.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
-+-.++|+|-+|+||||+|+.|++.|.-
T Consensus 37 l~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 37 LHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4568999999999999999999999863
No 329
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.63 E-value=0.062 Score=57.87 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=28.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
+|.++|.+|||||||+..|.+.|...| ++-++
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~I 34 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG-RVGTV 34 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEE
Confidence 799999999999999999999999888 65555
No 330
>PRK06921 hypothetical protein; Provisional
Probab=94.62 E-value=0.25 Score=52.91 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=30.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhc-CCceEEEec
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNV 387 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~-gi~t~v~n~ 387 (753)
.--++|.|-||+|||+||.+|+..+... ++.+..+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 3468999999999999999999998765 766665543
No 331
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.61 E-value=0.032 Score=53.69 Aligned_cols=29 Identities=24% Similarity=0.106 Sum_probs=25.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
...+|++.|-+|+||||+++.+++.|+..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 35589999999999999999999998754
No 332
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=94.58 E-value=0.26 Score=52.74 Aligned_cols=113 Identities=17% Similarity=0.232 Sum_probs=69.1
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~ 428 (753)
..|+||||-|.-||||..+-+.|...|.-.|+++..|.. +..++ ...-.+.-...
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~------------------Pt~eE-------~~~p~lWRfw~ 108 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKA------------------PSAEE-------LDHDFLWRIHK 108 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCC------------------CCHHH-------HcCchHHHHHH
Confidence 469999999999999999999999998877776655521 11111 01111111111
Q ss_pred HHhcCCeEEEEeCCCCCHHH-------------HHHHH---H----HHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCC
Q 004453 429 WMHEGGQVGIFDATNSSRKR-------------RNMLM---K----MAEGNCKIIFLETICNDRDIIERNIRLKIQQSPD 488 (753)
Q Consensus 429 ~l~~~G~vVIlDATn~~~~~-------------R~~l~---~----l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd 488 (753)
.|=..|+++|+|-+-....- +..+. . +...|+.++=+-+.. +.+.-++|++.+.. +|+
T Consensus 109 ~lP~~G~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhI-sk~eQ~kRl~~r~~-~p~ 186 (264)
T TIGR03709 109 ALPERGEIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHI-SKEEQKKRFLARLD-DPT 186 (264)
T ss_pred hCCCCCeEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeC-CHHHHHHHHHHHhc-CCc
Confidence 12346999999987665421 22222 1 256777664444344 57788889988754 453
No 333
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.57 E-value=0.049 Score=52.70 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=28.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
+|.++|..+|||||+++.|.++|...|.+.-++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i 34 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI 34 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence 688999999999999999999999888887644
No 334
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.56 E-value=0.043 Score=53.50 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=32.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
+|.++|.+|+||||++..|+..+...+.+.-+++.|.
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 3778999999999999999999988888888887663
No 335
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=94.56 E-value=0.75 Score=49.00 Aligned_cols=111 Identities=16% Similarity=0.282 Sum_probs=58.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~~ 432 (753)
+||++|++|+|||+-.+.|.. ++|.. +|+. -.. .+-+++..+.. .-...
T Consensus 3 lvIVTGlSGAGKsvAl~~lED-lGyyc-------vDNL-----------------Pp~---Llp~~~~~~~~---~~~~~ 51 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVLED-LGYYC-------VDNL-----------------PPQ---LLPKLADLMLT---LESRI 51 (286)
T ss_pred EEEEecCCCCcHHHHHHHHHh-cCeee-------ecCC-----------------CHH---HHHHHHHHHhh---cccCC
Confidence 789999999999998887774 33321 2222 111 11122221111 00001
Q ss_pred CCeEEEEeCCCCCH--HHHHHHHHHHcC---CceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 004453 433 GGQVGIFDATNSSR--KRRNMLMKMAEG---NCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAG 498 (753)
Q Consensus 433 ~G~vVIlDATn~~~--~~R~~l~~l~~~---~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~a 498 (753)
....|++|--+..- .-.+.+.++.+. .++++|+| ++++.+++|--+.| +.-|.-... ...++
T Consensus 52 ~kvAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLe--A~~~~Lv~RY~etR-R~HPL~~~~-~l~~~ 118 (286)
T COG1660 52 TKVAVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLE--ADDETLVRRYSETR-RSHPLSEDG-LLLEA 118 (286)
T ss_pred ceEEEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEE--CchhHHHHHHhhhh-hcCCCCccC-cHHHH
Confidence 24467778777621 223333344444 38999998 55666666665555 445655443 34444
No 336
>PF05729 NACHT: NACHT domain
Probab=94.55 E-value=0.032 Score=53.48 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=24.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcC
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLG 379 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~g 379 (753)
+++++|-||+||||+++.++..+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 689999999999999999999886543
No 337
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.54 E-value=0.32 Score=58.31 Aligned_cols=28 Identities=32% Similarity=0.300 Sum_probs=24.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
-+-.++|+|-+|+||||+|+.+++.|.-
T Consensus 37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 37 LHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3457899999999999999999999874
No 338
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.50 E-value=0.22 Score=52.15 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=28.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
...++++.|-||+|||++|.++...--..|-++..++.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 46799999999999999998876543244666666644
No 339
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.50 E-value=0.97 Score=47.53 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
+-+++++|.+|+||||+++.+.+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 44789999999999999999998876
No 340
>PRK09183 transposase/IS protein; Provisional
Probab=94.46 E-value=0.12 Score=55.04 Aligned_cols=39 Identities=26% Similarity=0.213 Sum_probs=31.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
-.++++|-||+||||+|.+|+..+...|.++..++..++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l 141 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADL 141 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHH
Confidence 467799999999999999998877667777776654333
No 341
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.46 E-value=0.35 Score=57.68 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=25.6
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
.-+-.++|+|-+|+||||+|+.|++.|.-
T Consensus 36 rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 36 RLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34568999999999999999999999864
No 342
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.44 E-value=0.046 Score=56.46 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=30.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
-.++++|-||+||||+|+++++.+...+.....++.
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 468899999999999999999988767777777755
No 343
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.42 E-value=0.18 Score=58.87 Aligned_cols=42 Identities=33% Similarity=0.302 Sum_probs=34.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc--CCceEEEeccchh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKYR 391 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~--gi~t~v~n~d~yR 391 (753)
..-+|+|+|.+|+||||++.+|+..+... +.++.+++.|.||
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 35688899999999999999999877543 4567788888876
No 344
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.42 E-value=0.43 Score=54.31 Aligned_cols=109 Identities=16% Similarity=0.135 Sum_probs=61.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh-hcCCceEEEeccchh----hhhc----CCCCCCCCCCCCCHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYR----RLKH----GVNQSADFFRADNPEGMEARNEVAA 420 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~-~~gi~t~v~n~d~yR----r~~~----g~~~~~~~~~~~~~~~~~~~~~vA~ 420 (753)
..-++++.|-||+|||++|..++..+. ..+.++-+|+.+--. +++. +.....-....-+.+.+..+.+.+
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~~- 271 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAV- 271 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHH-
Confidence 456999999999999999999998775 457788888764221 1111 111110001111222222222222
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcC-CceEEEEEE
Q 004453 421 LAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEG-NCKIIFLET 467 (753)
Q Consensus 421 ~~l~d~~~~l~~~G~vVIlDATn~~~-~~R~~l~~l-~~~-~~~vifIE~ 467 (753)
..+.+ ....|.|..+.+. +-|..++.+ .+. ++.+++|.-
T Consensus 272 -------~~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDy 313 (421)
T TIGR03600 272 -------DRLSE-KDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDY 313 (421)
T ss_pred -------HHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 22332 3556666656555 456777766 344 688888874
No 345
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.42 E-value=0.074 Score=53.22 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=33.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh-hcCCceEEEeccch
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKY 390 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~-~~gi~t~v~n~d~y 390 (753)
...++|+|.+|+|||.+|++|++.|. ....+...+|...|
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc
Confidence 45889999999999999999999987 45556667777666
No 346
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.40 E-value=0.08 Score=60.04 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=28.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceE
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~ 383 (753)
.|.-|+|+|.||+|||++|++|++.++...++.+
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd 79 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence 4567999999999999999999999876554444
No 347
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=94.35 E-value=0.44 Score=50.43 Aligned_cols=110 Identities=15% Similarity=0.235 Sum_probs=65.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCC---C-CCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGV---N-QSADFFRADNPEGMEARNEVAALAMEDM 426 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~---~-~~~~~~~~~~~~~~~~~~~vA~~~l~d~ 426 (753)
++++++.|--|+||||+|..|+.+|...|.++-+++.|.......+. . ....+... . ++-....+++
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~~~l~~~~~~i~~~-~--------~i~~r~fD~L 73 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGYKALNVRRLNIMDG-D--------EINTRNFDAL 73 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhHHhcCCcceecccC-C--------ccchhhHHHH
Confidence 56778889999999999999999999889999899887443222111 0 01111110 1 1112233555
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHH-H-----HHHHH-HcCCceEEEEEEEe
Q 004453 427 ISWMHEGGQVGIFDATNSSRKRR-N-----MLMKM-AEGNCKIIFLETIC 469 (753)
Q Consensus 427 ~~~l~~~G~vVIlDATn~~~~~R-~-----~l~~l-~~~~~~vifIE~~c 469 (753)
++.+...+..+|+|.+-..-.-- + .+.++ .+.|..+++.-+++
T Consensus 74 ve~i~~~~~dvIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi~ 123 (241)
T PRK13886 74 VEMIASTEGDVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVT 123 (241)
T ss_pred HHHHhccCCCEEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEEC
Confidence 55665456667887775443321 1 22334 67888887665444
No 348
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.34 E-value=0.029 Score=57.70 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=27.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
.++|-++|.|||||||+|+.++. ++. .+++.|++-|
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~-----~vidaD~v~r 37 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGF-----PVIDADDVAR 37 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCC-----eEEEccHHHH
Confidence 46899999999999999999987 443 3466665544
No 349
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.30 E-value=0.036 Score=57.24 Aligned_cols=31 Identities=29% Similarity=0.311 Sum_probs=27.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCce
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDT 382 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t 382 (753)
++|.+=|..||||||+|+.|+++|++..++|
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldT 35 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDT 35 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecc
Confidence 6888999999999999999999999876544
No 350
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=94.29 E-value=0.1 Score=51.41 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=33.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
+.++.+-+|+||||+|..|+..|...|.++-+++.|.-
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q 39 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIY 39 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 45778999999999999999999999999999988643
No 351
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.28 E-value=0.45 Score=56.47 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.+-.++++|.||+||||+|+.+++.|.
T Consensus 37 l~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 37 LTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 456799999999999999999999985
No 352
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.27 E-value=0.79 Score=51.76 Aligned_cols=42 Identities=31% Similarity=0.269 Sum_probs=32.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh--hcCCceEEEeccchhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKYRR 392 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~--~~gi~t~v~n~d~yRr 392 (753)
+.+|+|+|..|.||||.-.+|+.++. ....++-++..|.||=
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI 246 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI 246 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh
Confidence 77999999999999876666665554 4456777898999963
No 353
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.27 E-value=0.38 Score=56.66 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=24.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
.+-.++|+|.||+||||+|+.|++.|.-
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4557899999999999999999999863
No 354
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.26 E-value=0.034 Score=50.95 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhh
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
|++.|-||+|||++|+.|++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998863
No 355
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.25 E-value=0.59 Score=55.53 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=25.1
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.-+-.++|+|-+|+||||+|+.|++.|.
T Consensus 36 ~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 36 RVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 3466889999999999999999999986
No 356
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=94.25 E-value=0.072 Score=55.89 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=31.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
.+|.++|.+||||||++.+|.+.|...|+++-++
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi 35 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATA 35 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 3789999999999999999999999889888877
No 357
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=94.24 E-value=0.036 Score=56.96 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=28.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
.+++|.++|-+||||||+++.|.. ++. .+++.|.+-+
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~-----~v~d~D~i~~ 40 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGC-----ELFEADRVAK 40 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCC-----eEEeccHHHH
Confidence 568999999999999999999986 333 3455554433
No 358
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.22 E-value=0.36 Score=55.44 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=30.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhc--CCceEEEeccch
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 390 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~--gi~t~v~n~d~y 390 (753)
-++++|-||+|||+|+++++..+... +.++..++..++
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~ 189 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF 189 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 37889999999999999999998765 556666665444
No 359
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.22 E-value=0.23 Score=54.67 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=30.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
+..++.+.|.|||||||||.+++......+..+-.++.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 45699999999999999999988777666666666654
No 360
>PRK04328 hypothetical protein; Provisional
Probab=94.21 E-value=0.21 Score=52.86 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=29.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
..-++++.|-||+|||++|.++...--..|.++..++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 46699999999999999999876553344667766654
No 361
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.18 E-value=0.074 Score=60.50 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=23.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
--|+|+|.||+|||++|+.|++.+++.
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~p 135 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVP 135 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 468999999999999999999987643
No 362
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.18 E-value=0.44 Score=55.78 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=25.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
-+-.++|+|-||+||||+|+.|++.|..
T Consensus 37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 37 LHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3558999999999999999999999864
No 363
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=94.16 E-value=1.1 Score=48.13 Aligned_cols=76 Identities=17% Similarity=0.294 Sum_probs=43.2
Q ss_pred CCeEEEEeCCCC-CHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHhcc-c
Q 004453 433 GGQVGIFDATNS-SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY-E 510 (753)
Q Consensus 433 ~G~vVIlDATn~-~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~~y-~ 510 (753)
.+-++|+|++.. ....+..+..+.+.+.+++++--.++ ..+. +.+..++...+++... .
T Consensus 89 D~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D------------------~~~a-~~~~~~~~l~~~l~~~~~ 149 (270)
T cd01886 89 DGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMD------------------RTGA-DFFRVVEQIREKLGANPV 149 (270)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCC------------------CCCC-CHHHHHHHHHHHhCCCce
Confidence 478889999875 44556666666656666654321221 1122 4566666666666543 2
Q ss_pred ccccCCCCC-ceEEEeec
Q 004453 511 KVYEPVDEG-SYIKMIDM 527 (753)
Q Consensus 511 ~~yEpl~e~-~yik~i~~ 527 (753)
..+-|+++. .|..++|.
T Consensus 150 ~~~~Pisa~~~f~g~vd~ 167 (270)
T cd01886 150 PLQLPIGEEDDFRGVVDL 167 (270)
T ss_pred EEEeccccCCCceEEEEc
Confidence 233466655 66666666
No 364
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=94.16 E-value=0.38 Score=55.85 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=70.8
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~ 427 (753)
...|++|||-|+-||||.+..+.|.+.|...|+++..+..-.- .+...- .+.-..
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~-----------------eE~~~~--------flwRfw 91 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSD-----------------EERERP--------PMWRFW 91 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCH-----------------HHhcCc--------HHHHHH
Confidence 4579999999999999999999999999988887766622111 111111 111111
Q ss_pred HHHhcCCeEEEEeCCCCCHH-------------HHHHHH---H----HHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCC
Q 004453 428 SWMHEGGQVGIFDATNSSRK-------------RRNMLM---K----MAEGNCKIIFLETICNDRDIIERNIRLKIQQSP 487 (753)
Q Consensus 428 ~~l~~~G~vVIlDATn~~~~-------------~R~~l~---~----l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~p 487 (753)
..|=..|.++|+|-+-..+. .+..+. . +...|+.++=+-... +.+.-++|++.|.. +|
T Consensus 92 ~~lP~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhI-sk~EQ~kRl~~r~~-~P 169 (493)
T TIGR03708 92 RRLPPKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHL-SKKQQKERLKKLEK-DP 169 (493)
T ss_pred HhCCCCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC-CHHHHHHHHHHHhc-CC
Confidence 12334699999998766542 122222 2 256777665444455 56778888888754 44
No 365
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.15 E-value=0.22 Score=57.97 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=24.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
.|.-|+|+|.||+|||.+|++|+..++..
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 45678999999999999999999987543
No 366
>COG4240 Predicted kinase [General function prediction only]
Probab=94.11 E-value=0.068 Score=55.68 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=37.1
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcC-CceEEEeccch
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFNVGKY 390 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~g-i~t~v~n~d~y 390 (753)
.+|+++-++|.-||||||+|..|.+.|...| .++-.++.||+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDl 90 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDL 90 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhh
Confidence 4699999999999999999999999999888 47777877766
No 367
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.10 E-value=0.42 Score=53.73 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=34.7
Q ss_pred ccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 341 ~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
|.+.+..-...-++++.|-||+||||++.+++..+...+.++-.++..
T Consensus 72 D~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 72 DRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred HHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 444433322356999999999999999999998887666666556543
No 368
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=94.10 E-value=0.46 Score=49.98 Aligned_cols=112 Identities=17% Similarity=0.228 Sum_probs=69.3
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~ 428 (753)
..|+||||-|..||||.-+.+.|...|.-.|+++..|.. +..++ ...-.+.-...
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~------------------pt~eE-------~~~p~lwRfw~ 83 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPK------------------PSDRE-------RTQWYFQRYVQ 83 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCC------------------CCHHH-------HcChHHHHHHH
Confidence 469999999999999999999999998877777666521 11111 11111111111
Q ss_pred HHhcCCeEEEEeCCCCCHHH-------------HH---HHHH----HHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCC
Q 004453 429 WMHEGGQVGIFDATNSSRKR-------------RN---MLMK----MAEGNCKIIFLETICNDRDIIERNIRLKIQQSP 487 (753)
Q Consensus 429 ~l~~~G~vVIlDATn~~~~~-------------R~---~l~~----l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~p 487 (753)
.|=..|+++|+|-.-....- .. .+.. +...|+.++=+-+.. +.+.-++|++.+.. +|
T Consensus 84 ~lP~~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhI-sk~eQ~kRl~~r~~-~p 160 (230)
T TIGR03707 84 HLPAAGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSV-SREEQLRRFKARID-DP 160 (230)
T ss_pred hCCCCCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC-CHHHHHHHHHHHhc-CC
Confidence 13356999999987765421 11 1112 256777664444444 57778888888754 44
No 369
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.08 E-value=0.06 Score=63.91 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=36.3
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
...+.+.+|||+||-||||||.-+|+. .|+++..+|+.|-|-
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkq---aGYsVvEINASDeRt 364 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQ---AGYSVVEINASDERT 364 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHh---cCceEEEeccccccc
Confidence 345679999999999999999999998 788998899877654
No 370
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=94.07 E-value=0.095 Score=49.11 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=18.0
Q ss_pred EEEEccCCCCHHHHHHHHHH
Q 004453 354 IVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r 373 (753)
|+++|.||+||||+..+|..
T Consensus 3 i~~~G~~~~GKStl~~~l~~ 22 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVD 22 (159)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998854
No 371
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=94.07 E-value=0.44 Score=47.15 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.2
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
.++.-|+++|.+|+||||+..+|...
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 45668899999999999999998754
No 372
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.18 Score=59.08 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=24.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.|.=|+++|.||||||.||++|+..|+
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~ 248 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELG 248 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcC
Confidence 355689999999999999999999976
No 373
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.06 E-value=0.6 Score=53.27 Aligned_cols=108 Identities=16% Similarity=0.127 Sum_probs=60.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh-cCCceEEEeccchhhh----hcCCCCCC---CCC-CCCCHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRRL----KHGVNQSA---DFF-RADNPEGMEARNEVAA 420 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~-~gi~t~v~n~d~yRr~----~~g~~~~~---~~~-~~~~~~~~~~~~~vA~ 420 (753)
..-++++.|-||+|||++|..++..+.. .|..+-.|+.+.-... +......- .+. ..-+.+.+....+.
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a-- 271 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSA-- 271 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHH--
Confidence 4569999999999999999999987654 4777777776532221 11100000 000 01122222222111
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCceEEEEE
Q 004453 421 LAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCKIIFLE 466 (753)
Q Consensus 421 ~~l~d~~~~l~~~G~vVIlDATn~~~-~~R~~l~~l-~~~~~~vifIE 466 (753)
...+.+ ....|.|..+.+. +-+..++.+ .++++++++|.
T Consensus 272 ------~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID 312 (434)
T TIGR00665 272 ------AGKLSE-APLYIDDTPGLTITELRAKARRLKREHGLGLIVID 312 (434)
T ss_pred ------HHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 122332 3455656555554 456666666 56788888886
No 374
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=94.04 E-value=0.2 Score=56.79 Aligned_cols=138 Identities=17% Similarity=0.231 Sum_probs=83.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~ 429 (753)
.-+|++=..--||||||+|+.|.+.++|..+..|-++. ....+ .+++... .-
T Consensus 373 e~tll~pia~igcgktt~ak~l~~lf~w~~vqnd~lsg------------------k~~~k------~~~kai~----~~ 424 (758)
T COG5324 373 EFTLLVPIATIGCGKTTVAKILEKLFGWPVVQNDNLSG------------------KGGPK------RFAKAII----EE 424 (758)
T ss_pred eeEEEEEEEEeccCcccHHHHHHHHcCCcccccCCCCC------------------CCchh------HHHHHHH----HH
Confidence 45577777788999999999999999998755544422 11111 1111111 11
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH---HcCCceEEEEEEEeC--cHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 004453 430 MHEGGQVGIFDATNSSRKRRNMLMKM---AEGNCKIIFLETICN--DRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 504 (753)
Q Consensus 430 l~~~G~vVIlDATn~~~~~R~~l~~l---~~~~~~vifIE~~c~--d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~ 504 (753)
+.++-.+|++|-.|..-..|..+..- ...|++++-+-..-. -++....|+-+|- ...... -+++..+..+.
T Consensus 425 ~r~~~~~v~~drnnh~~~~r~~lq~d~l~~~~~vr~v~~p~~~~~ev~e~~~~rvlqrg---~~hqsi-k~~eg~~kv~~ 500 (758)
T COG5324 425 FRNGHSVVFADRNNHISNMRSTLQTDILALIDGVRFVALPFKHTPEVPEFVQNRVLQRG---DRHQSI-KVSEGVDKVKA 500 (758)
T ss_pred hccCceEEEEcccchhhhhhhhhhcceEEEecCcEEEecccccCcccHHHHHHHHHhcc---CCccce-eeccchHHHHH
Confidence 23345577778888777788777653 345666655543221 3455666665542 222222 45667777777
Q ss_pred HHhcccccccCCCCC
Q 004453 505 RLANYEKVYEPVDEG 519 (753)
Q Consensus 505 Ri~~y~~~yEpl~e~ 519 (753)
-+..+-++|.|++.+
T Consensus 501 imn~f~k~ykp~~~~ 515 (758)
T COG5324 501 IMNTFYKQYKPFDAG 515 (758)
T ss_pred HHHHHHHhcCCCCCC
Confidence 777888889999855
No 375
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.00 E-value=0.4 Score=55.21 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=34.4
Q ss_pred ccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 341 ~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
|.+.+..=...-++++.|-||+||||++.+++..+...+.++-.++..
T Consensus 70 D~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E 117 (446)
T PRK11823 70 DRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE 117 (446)
T ss_pred HHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 444443322355999999999999999999998876556666665543
No 376
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.09 Score=60.52 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.8
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
+.=|.=|+++|.||+|||-|||+++-.
T Consensus 334 GKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 334 GKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred CcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 455788999999999999999999865
No 377
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.00 E-value=0.29 Score=54.00 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=30.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
+..++.+.|.|||||||+|.+++......+-.+-.++.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 45688899999999999999998777666666666654
No 378
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.99 E-value=0.37 Score=58.59 Aligned_cols=42 Identities=29% Similarity=0.310 Sum_probs=34.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh-hcC-CceEEEeccchh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLG-HDTKHFNVGKYR 391 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~-~~g-i~t~v~n~d~yR 391 (753)
.+.+|.|+|..|+||||+..+|+.++. ..| .++-++..|.||
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 357999999999999999999998774 444 466677778786
No 379
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.97 E-value=0.62 Score=52.68 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=29.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhc--CCceEEEeccch
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 390 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~--gi~t~v~n~d~y 390 (753)
.++++|-||+|||+|+++++..+... +.++..++..++
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~ 177 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF 177 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH
Confidence 47889999999999999999998654 455555655443
No 380
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.96 E-value=0.16 Score=55.46 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
.-++|+.||+|||||||.|.|-+-.
T Consensus 54 GeIfViMGLSGSGKSTLvR~~NrLi 78 (386)
T COG4175 54 GEIFVIMGLSGSGKSTLVRLLNRLI 78 (386)
T ss_pred CeEEEEEecCCCCHHHHHHHHhccC
Confidence 4578888999999999999888654
No 381
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.93 E-value=0.4 Score=59.08 Aligned_cols=27 Identities=33% Similarity=0.316 Sum_probs=24.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-+-.++|+|-+|+||||+|+.|++.|.
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999999986
No 382
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.92 E-value=0.36 Score=51.36 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=29.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
...+++++|-||+|||++|.+++...-..|.++-.++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 46699999999999999999987765445666655543
No 383
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.90 E-value=0.13 Score=58.44 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=26.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~ 381 (753)
.|.-|+|+|.||+|||++|++|++.++...+.
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~ 80 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChhee
Confidence 35678999999999999999999997654433
No 384
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.88 E-value=0.05 Score=59.86 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=25.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCC
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi 380 (753)
-|++.|.||+||||+|++|++.|++..+
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 4889999999999999999999987654
No 385
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.87 E-value=0.32 Score=52.35 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=24.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.|..+++.|.||+||||+|..|++.|.
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 344899999999999999999999986
No 386
>PRK05636 replicative DNA helicase; Provisional
Probab=93.84 E-value=0.48 Score=55.37 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=67.0
Q ss_pred ccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHh-hcCCceEEEeccchh----hhhcCCCCCC---CC-CCCCCHHH
Q 004453 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYR----RLKHGVNQSA---DF-FRADNPEG 411 (753)
Q Consensus 341 ~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~-~~gi~t~v~n~d~yR----r~~~g~~~~~---~~-~~~~~~~~ 411 (753)
|.+++.. ...-+|++.|-||.|||++|..++.... ..+..+-+|+..-=+ .++......- .+ ...-+++.
T Consensus 256 D~~t~Gl-~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e 334 (505)
T PRK05636 256 DDLTNGL-RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDA 334 (505)
T ss_pred hhhcCCC-CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHH
Confidence 3444322 3456999999999999999999988764 346666677664221 1111111100 01 11123333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCceEEEEE
Q 004453 412 MEARNEVAALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCKIIFLE 466 (753)
Q Consensus 412 ~~~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~-~~R~~l~~l-~~~~~~vifIE 466 (753)
+..+.+.+. .+. .....|-|..+.+. +-|..++.+ .++++.+++|.
T Consensus 335 ~~~~~~a~~--------~l~-~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvID 382 (505)
T PRK05636 335 WEKLVQRLG--------KIA-QAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVD 382 (505)
T ss_pred HHHHHHHHH--------HHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 333322222 232 35677878888765 567777777 66788888885
No 387
>PF13245 AAA_19: Part of AAA domain
Probab=93.83 E-value=0.099 Score=45.34 Aligned_cols=25 Identities=36% Similarity=0.301 Sum_probs=18.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-++++.|.||||||+++..+..++-
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688899999999966655555554
No 388
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.15 Score=60.01 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=25.0
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
+.|.=|+|.|.||||||++|++|+..-+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~ 493 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAG 493 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhc
Confidence 5688899999999999999999997754
No 389
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.80 E-value=0.056 Score=53.08 Aligned_cols=31 Identities=23% Similarity=0.127 Sum_probs=21.8
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
...+.+++++|.+|+|||++.+++.+++...
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4557899999999999999999999998765
No 390
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=93.80 E-value=0.5 Score=45.05 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
++-|+++|.||+||||+..+|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 567999999999999999999654
No 391
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.79 E-value=0.17 Score=57.12 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=24.3
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
..|.-|+++|.||+|||++|++++..++
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhC
Confidence 3456799999999999999999998865
No 392
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.79 E-value=0.63 Score=46.08 Aligned_cols=106 Identities=15% Similarity=0.131 Sum_probs=55.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc-------hhhhhcCCCCCCCCCCCCCH-------HHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-------YRRLKHGVNQSADFFRADNP-------EGMEARN 416 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~-------yRr~~~g~~~~~~~~~~~~~-------~~~~~~~ 416 (753)
.-++.++|..||||||+.+.|+..+....-. ..++..+ +|+...-..+...++...+- .+-+++.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv 104 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLKPDSGE-IKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRL 104 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHH
Confidence 4489999999999999999998765422111 1222211 12211111222233332111 1223444
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCCC--CHHHHHHHHHH----HcCCceEEEE
Q 004453 417 EVAALAMEDMISWMHEGGQVGIFDATNS--SRKRRNMLMKM----AEGNCKIIFL 465 (753)
Q Consensus 417 ~vA~~~l~d~~~~l~~~G~vVIlDATn~--~~~~R~~l~~l----~~~~~~vifI 465 (753)
.+|+..+. +-.++|+|-.+. ....++.+.++ .+.+..++++
T Consensus 105 ~laral~~--------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~ 151 (173)
T cd03230 105 ALAQALLH--------DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLS 151 (173)
T ss_pred HHHHHHHc--------CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 55555444 678999998765 44555555544 3335455444
No 393
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.78 E-value=0.063 Score=53.57 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=21.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhhcC
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRWLG 379 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~~g 379 (753)
|+++|-||+||||+.+++.+.|...+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~ 27 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKG 27 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTC
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccC
Confidence 78999999999999999999995433
No 394
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.76 E-value=1.3 Score=49.52 Aligned_cols=39 Identities=28% Similarity=0.311 Sum_probs=29.4
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcC--CceEEEec
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG--HDTKHFNV 387 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~g--i~t~v~n~ 387 (753)
..+-.++++|.||+|||++++.+.+.+...+ +....+|.
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~ 93 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC 93 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC
Confidence 3445678999999999999999999886543 44444554
No 395
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.76 E-value=0.14 Score=59.72 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=24.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
|.=|+|.|.||+|||++|++++..|...
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 4458999999999999999999998643
No 396
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.72 E-value=0.056 Score=58.34 Aligned_cols=30 Identities=33% Similarity=0.528 Sum_probs=25.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCC
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi 380 (753)
..-+++.|-||+||||+|+.+++.+...+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 346899999999999999999999876654
No 397
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=93.66 E-value=0.14 Score=50.08 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=18.7
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 004453 354 IVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~ 374 (753)
|+++|.+|+|||++..++...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999988754
No 398
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.63 E-value=0.063 Score=58.01 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=36.2
Q ss_pred CCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 346 ~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
+.+++|+++-+.|-+|+||+++|+.|++.+...|.++..+
T Consensus 105 ~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V 144 (344)
T KOG2170|consen 105 PNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFV 144 (344)
T ss_pred CCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhH
Confidence 4478999999999999999999999999999999888765
No 399
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=93.53 E-value=0.5 Score=45.34 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
+|+++|.+|+||||+..+|...
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~ 23 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKT 23 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhc
Confidence 5899999999999999999754
No 400
>PRK06321 replicative DNA helicase; Provisional
Probab=93.51 E-value=0.7 Score=53.60 Aligned_cols=117 Identities=15% Similarity=0.077 Sum_probs=65.1
Q ss_pred cccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHh-hcCCceEEEeccchh----hhhcCCCCC---CCC-CCCCCHH
Q 004453 340 ADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYR----RLKHGVNQS---ADF-FRADNPE 410 (753)
Q Consensus 340 ~~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~-~~gi~t~v~n~d~yR----r~~~g~~~~---~~~-~~~~~~~ 410 (753)
.|.+++ .-...-+|++.|-||.|||++|..|+.... ..+..+-+|+..-=. .++...... ..+ ...-+++
T Consensus 216 LD~~t~-Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~ 294 (472)
T PRK06321 216 LDKMIN-GFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSRSEVESKKISVGDLSGR 294 (472)
T ss_pred HHHHhc-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhcCCCHHHhhcCCCCHH
Confidence 345554 223456999999999999999999998764 246677777764222 112111110 011 1112233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCceEEEEE
Q 004453 411 GMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCKIIFLE 466 (753)
Q Consensus 411 ~~~~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~-~~R~~l~~l-~~~~~~vifIE 466 (753)
.+..+.+.+. .+.+ ....|-|..+.+. +-|..++.+ .++++.+++|.
T Consensus 295 e~~~~~~a~~--------~l~~-~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvID 343 (472)
T PRK06321 295 DFQRIVSVVN--------EMQE-HTLLIDDQPGLKITDLRARARRMKESYDIQFLIID 343 (472)
T ss_pred HHHHHHHHHH--------HHHc-CCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 3332222222 1322 3455555555544 567777777 56788888886
No 401
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.50 E-value=0.74 Score=56.08 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-++++|-||+||||+|+.+++.+.
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 458899999999999999998754
No 402
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=93.47 E-value=0.21 Score=49.46 Aligned_cols=106 Identities=21% Similarity=0.221 Sum_probs=56.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHh----hcCCceEE----EeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLR----WLGHDTKH----FNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAME 424 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~----~~gi~t~v----~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~ 424 (753)
-|.++|-|.+|||||-.+|...-. |.|.-.+. +..++..-.+........+. ...++ +++++..+.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~-~~s~e-----e~v~~~~l~ 75 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLS-SKSEE-----ERVARDYLL 75 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSS-SSSHH-----HHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCC-CCCcH-----HHHHHHHHh
Confidence 478999999999999999975432 45544432 11111100011111111221 12221 234443332
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEe
Q 004453 425 DMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETIC 469 (753)
Q Consensus 425 d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c 469 (753)
.-+-+..++|+||+++.+. ..+..++.+.+.+++++--.+
T Consensus 76 ----~~~~D~ii~VvDa~~l~r~-l~l~~ql~e~g~P~vvvlN~~ 115 (156)
T PF02421_consen 76 ----SEKPDLIIVVVDATNLERN-LYLTLQLLELGIPVVVVLNKM 115 (156)
T ss_dssp ----HTSSSEEEEEEEGGGHHHH-HHHHHHHHHTTSSEEEEEETH
T ss_pred ----hcCCCEEEEECCCCCHHHH-HHHHHHHHHcCCCEEEEEeCH
Confidence 0012367999999996443 455666688888988776444
No 403
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.47 E-value=0.57 Score=54.50 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=24.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-+-.++|+|.||+||||+|+.+++.|.
T Consensus 34 i~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 34 IPQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred CCceEEEECCCCccHHHHHHHHHHHHc
Confidence 355899999999999999999999885
No 404
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=93.47 E-value=0.13 Score=49.25 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.6
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 004453 354 IVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~ 374 (753)
|+++|.||+|||++..++...
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 688999999999999988754
No 405
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.46 E-value=0.57 Score=46.28 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=23.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
.-++.++|.+|+||||+.+.|+..+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~ 54 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 348899999999999999999987653
No 406
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=93.44 E-value=0.13 Score=49.25 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=18.4
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 004453 354 IVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~ 374 (753)
|+++|.+|+|||++..++...
T Consensus 2 i~iiG~~~~GKssli~~~~~~ 22 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLG 22 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 689999999999999888643
No 407
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.44 E-value=0.16 Score=57.69 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=23.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
+--|+|+|.||+|||++|++|++.++
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcC
Confidence 34799999999999999999998875
No 408
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.44 E-value=0.47 Score=51.10 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=21.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhh
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
++++|.||+||||+|+.+++.+..
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 699999999999999999998753
No 409
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.44 E-value=0.56 Score=52.06 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=23.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
|.+|++.|-||||||.||-.|++.|
T Consensus 1 K~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred CeEEEEEecCCcCHHHHHHHHHHHh
Confidence 4589999999999999999999998
No 410
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.44 E-value=0.16 Score=58.46 Aligned_cols=48 Identities=19% Similarity=0.086 Sum_probs=34.5
Q ss_pred ccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 341 ~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
|.+.+..-...-++++.|-||+||||++.+++..+...+.++-.++..
T Consensus 84 D~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E 131 (454)
T TIGR00416 84 DRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE 131 (454)
T ss_pred HHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 444433323456899999999999999999988876666666555543
No 411
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=93.41 E-value=0.09 Score=54.29 Aligned_cols=38 Identities=24% Similarity=0.136 Sum_probs=34.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
+++++|-+|+||||+|..|+.++...|.++-+++.|--
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~ 38 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPA 38 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 47899999999999999999999999999999987644
No 412
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=93.40 E-value=0.25 Score=58.22 Aligned_cols=110 Identities=24% Similarity=0.281 Sum_probs=61.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhc-------CCceEEEeccchhhhhcCCCCCCCCCC-----------C-CCHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWL-------GHDTKHFNVGKYRRLKHGVNQSADFFR-----------A-DNPEGM 412 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~-------gi~t~v~n~d~yRr~~~g~~~~~~~~~-----------~-~~~~~~ 412 (753)
-.+.++|.+||||||+++.|.+++... |.+..-++.+.+|+...-..++...|. + .++
T Consensus 356 e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~--- 432 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATD--- 432 (567)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCH---
Confidence 367799999999999999999998642 334444556666775443333322222 2 233
Q ss_pred HHHHHHHHHH-HHHHHHHHhcCCeEEEEe--CCCCCHHHHHHHH---HHHcCCceEEEEE
Q 004453 413 EARNEVAALA-MEDMISWMHEGGQVGIFD--ATNSSRKRRNMLM---KMAEGNCKIIFLE 466 (753)
Q Consensus 413 ~~~~~vA~~~-l~d~~~~l~~~G~vVIlD--ATn~~~~~R~~l~---~l~~~~~~vifIE 466 (753)
+...+.++.+ +.|.+.-+ .+|...++. +.+..-.+|+.+. .+.+ +.+++.++
T Consensus 433 eei~~a~k~a~~~d~I~~l-p~g~dt~vge~G~~LSgGQrQrlaiARall~-~~~ILILD 490 (567)
T COG1132 433 EEIEEALKLANAHEFIANL-PDGYDTIVGERGVNLSGGQRQRLAIARALLR-NPPILILD 490 (567)
T ss_pred HHHHHHHHHhChHHHHHhC-cccccceecCCCccCCHHHHHHHHHHHHHhc-CCCEEEEe
Confidence 2333334333 34333334 236666665 4566666655543 3333 23565553
No 413
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.40 E-value=0.86 Score=45.34 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=22.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.-++.++|..|+||||+.+.|+..+.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999986654
No 414
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=93.36 E-value=0.56 Score=52.72 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=36.8
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
...+.+++++|.-.|||||++..|+.++-..|.++.+++.|
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaD 110 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDAD 110 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCC
Confidence 34677899999999999999999999999999999998876
No 415
>PRK08760 replicative DNA helicase; Provisional
Probab=93.34 E-value=0.69 Score=53.69 Aligned_cols=116 Identities=20% Similarity=0.170 Sum_probs=64.4
Q ss_pred ccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhh-cCCceEEEeccchhh----hhcCCCCCC---CCCC-CCCHHH
Q 004453 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRR----LKHGVNQSA---DFFR-ADNPEG 411 (753)
Q Consensus 341 ~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~-~gi~t~v~n~d~yRr----~~~g~~~~~---~~~~-~~~~~~ 411 (753)
|.+++. -.+.-+|++.|-||.|||++|..++..... .+..+-+|+.+--.. ++......- .+.. .-+.+.
T Consensus 220 D~~t~G-~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e 298 (476)
T PRK08760 220 DAMTAG-LQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALEDED 298 (476)
T ss_pred HHHhcC-CCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhhCCCcHHHHhcCCCCHHH
Confidence 444432 234569999999999999999999987653 466777777653221 111111100 0110 112222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcCCceEEEEE
Q 004453 412 MEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEGNCKIIFLE 466 (753)
Q Consensus 412 ~~~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~~-~R~~l~~l-~~~~~~vifIE 466 (753)
.....+. ...|.+ -...|.|..+.+.+ -|..++.+ .+.++.+++|.
T Consensus 299 ~~~~~~a--------~~~l~~-~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvID 346 (476)
T PRK08760 299 WARVTGA--------IKMLKE-TKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVID 346 (476)
T ss_pred HHHHHHH--------HHHHhc-CCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 2222221 222332 35666666666654 56677777 56678888886
No 416
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=93.33 E-value=0.72 Score=45.99 Aligned_cols=27 Identities=22% Similarity=0.114 Sum_probs=23.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
..+|+++|.+|+||-|+-......|..
T Consensus 5 G~lI~vvGPSGAGKDtl~~~ar~~l~~ 31 (192)
T COG3709 5 GRLIAVVGPSGAGKDTLLDAARARLAG 31 (192)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHhcc
Confidence 569999999999999998888877753
No 417
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.32 E-value=0.63 Score=46.23 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=52.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc-------hhhhhcC-CCCCCCCCCCC--------CHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-------YRRLKHG-VNQSADFFRAD--------NPEGMEA 414 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~-------yRr~~~g-~~~~~~~~~~~--------~~~~~~~ 414 (753)
.-++.++|.+|+||||+.+.|+..+....- ...++..+ +|+ ..+ ..+...++... =..+.++
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~-~i~~~~q~~~~~~~tv~~~i~~~LS~G~~q 105 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKPQQG-EITLDGVPVSDLEKALSS-LISVLNQRPYLFDTTLRNNLGRRFSGGERQ 105 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCC-EEEECCEEHHHHHHHHHh-hEEEEccCCeeecccHHHhhcccCCHHHHH
Confidence 348999999999999999999977643221 22333322 122 112 12222233211 0112334
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCCCC--CHHHHHHHHHH
Q 004453 415 RNEVAALAMEDMISWMHEGGQVGIFDATNS--SRKRRNMLMKM 455 (753)
Q Consensus 415 ~~~vA~~~l~d~~~~l~~~G~vVIlDATn~--~~~~R~~l~~l 455 (753)
+..+|+..+. .-.++|+|-... ....++.+.++
T Consensus 106 rv~laral~~--------~p~~lllDEP~~~LD~~~~~~l~~~ 140 (178)
T cd03247 106 RLALARILLQ--------DAPIVLLDEPTVGLDPITERQLLSL 140 (178)
T ss_pred HHHHHHHHhc--------CCCEEEEECCcccCCHHHHHHHHHH
Confidence 4455555444 678999997754 45555555554
No 418
>PRK06526 transposase; Provisional
Probab=93.31 E-value=0.053 Score=57.69 Aligned_cols=37 Identities=27% Similarity=0.283 Sum_probs=29.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
+.-++++|-||+|||++|.+|+..+...|.++..++.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 3468999999999999999999888766766644433
No 419
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.28 E-value=0.26 Score=49.62 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=23.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
...++++|.+||||||+.+.|...+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 458999999999999999999988763
No 420
>PRK08006 replicative DNA helicase; Provisional
Probab=93.24 E-value=1 Score=52.27 Aligned_cols=109 Identities=14% Similarity=0.091 Sum_probs=63.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh-hcCCceEEEeccchh----hhhcCCCCC---CCCC-CCCCHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYR----RLKHGVNQS---ADFF-RADNPEGMEARNEVAA 420 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~-~~gi~t~v~n~d~yR----r~~~g~~~~---~~~~-~~~~~~~~~~~~~vA~ 420 (753)
..-+|++.|-||.|||++|-.|+.... ..+..+-+|+..-=. .++...... ..+. ..-+++....+...+.
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~~ 302 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMG 302 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHH
Confidence 456999999999999999999988764 346677777764221 111111110 1111 1123333333333332
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcC-CceEEEEE
Q 004453 421 LAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEG-NCKIIFLE 466 (753)
Q Consensus 421 ~~l~d~~~~l~~~G~vVIlDATn~~~-~~R~~l~~l-~~~-~~~vifIE 466 (753)
..+. .-...|.|..+.+. +-|..++.+ .++ ++.+++|.
T Consensus 303 ~~~~--------~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvID 343 (471)
T PRK08006 303 ILLE--------KRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMID 343 (471)
T ss_pred HHHh--------cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 2212 34577777777765 466777666 444 68888885
No 421
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=93.19 E-value=0.2 Score=49.01 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=18.8
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 004453 354 IVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~ 374 (753)
|+++|++|+|||+|.+++...
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~ 22 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE 22 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999988754
No 422
>PRK10536 hypothetical protein; Provisional
Probab=93.18 E-value=0.95 Score=48.41 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
+++++|-+|+|||++|.+++..
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999999874
No 423
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.15 E-value=0.63 Score=51.64 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=24.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
.-+|+++|-+||||||+.++|.+++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 458999999999999999999988764
No 424
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=93.14 E-value=0.099 Score=49.87 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.7
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r 373 (753)
-|+++|.||+||||+.+++..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999998874
No 425
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.14 E-value=0.63 Score=53.17 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=38.4
Q ss_pred ccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 343 MLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 343 ~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
+..+.+.+|.+|++||.-|.||||--.+|+=.|-...+++-+--.|.+|
T Consensus 370 ~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFR 418 (587)
T KOG0781|consen 370 MSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFR 418 (587)
T ss_pred HHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchh
Confidence 4556677999999999999999998888887776667777665555554
No 426
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.08 E-value=0.75 Score=46.50 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=22.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
.-++.++|.+||||||+.+.|+..+
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999776
No 427
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.07 E-value=0.75 Score=54.08 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=24.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
-+-.++|+|-||+||||+|+.+++.|.-
T Consensus 37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 37 LHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3557899999999999999999999863
No 428
>PRK09165 replicative DNA helicase; Provisional
Probab=93.06 E-value=0.9 Score=53.04 Aligned_cols=35 Identities=34% Similarity=0.396 Sum_probs=26.6
Q ss_pred ccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 341 ~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
|.+++. -...-+|++.|-||.|||++|..++....
T Consensus 208 D~~~gG-~~~g~livIaarpg~GKT~~al~ia~~~a 242 (497)
T PRK09165 208 DSKLGG-LHPSDLIILAGRPSMGKTALATNIAFNAA 242 (497)
T ss_pred hhhcCC-CCCCceEEEEeCCCCChHHHHHHHHHHHH
Confidence 455542 23456999999999999999988876653
No 429
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=93.03 E-value=0.066 Score=55.83 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
++|.++|+|||||||+|+.+.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~ 23 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN 23 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc
Confidence 37999999999999999988753
No 430
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.99 E-value=1.6 Score=51.91 Aligned_cols=28 Identities=32% Similarity=0.293 Sum_probs=25.2
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
-+-+++|+|.+|+||||+|+.|++.|..
T Consensus 34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 34 INHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4568899999999999999999999874
No 431
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=92.98 E-value=0.31 Score=56.23 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=53.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCc----eEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHD----TKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~----t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d 425 (753)
.|+++.++|.||+|||||-+.|.+++...-++ ...+..|+-||.. |+.-. .-...+..+|+.+-
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiT--------flEcp--~Dl~~miDvaKIaD-- 135 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRIT--------FLECP--SDLHQMIDVAKIAD-- 135 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEE--------EEeCh--HHHHHHHhHHHhhh--
Confidence 57888899999999999999999998643221 1234456666632 22111 22334445555421
Q ss_pred HHHHHhcCCeEEEEeCCCCCH-HHHHHHHHHHcCCce
Q 004453 426 MISWMHEGGQVGIFDATNSSR-KRRNMLMKMAEGNCK 461 (753)
Q Consensus 426 ~~~~l~~~G~vVIlDATn~~~-~~R~~l~~l~~~~~~ 461 (753)
=....+|+.+... +.-+.+.-+..+|.+
T Consensus 136 --------LVlLlIdgnfGfEMETmEFLnil~~HGmP 164 (1077)
T COG5192 136 --------LVLLLIDGNFGFEMETMEFLNILISHGMP 164 (1077)
T ss_pred --------eeEEEeccccCceehHHHHHHHHhhcCCC
Confidence 2456677777755 333444334556543
No 432
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.97 E-value=0.33 Score=55.05 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=23.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.|.-|++.|.||+|||++|++++..+.
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 456788999999999999999998754
No 433
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.96 E-value=0.32 Score=56.46 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=35.8
Q ss_pred ccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 341 ~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
|.+.+..=.+.-++++.|-||+||||+|.+++...-..|-++-.++.+
T Consensus 253 D~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e 300 (484)
T TIGR02655 253 DEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE 300 (484)
T ss_pred HHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 344444333567999999999999999999987765667777766654
No 434
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.96 E-value=0.62 Score=47.78 Aligned_cols=27 Identities=19% Similarity=0.070 Sum_probs=23.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
...++.++|.||+|||++|.+++....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh
Confidence 456999999999999999999987653
No 435
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.95 E-value=0.69 Score=50.30 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=27.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcC--CceEEEeccch
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLG--HDTKHFNVGKY 390 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~g--i~t~v~n~d~y 390 (753)
.++++|.||+||||+|+++++.+...+ .+...++..++
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 367999999999999999999986432 23344555443
No 436
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.92 E-value=0.99 Score=53.75 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=29.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhh--cCCceEEEeccch
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 390 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~--~gi~t~v~n~d~y 390 (753)
++|+|-+|+|||+|+++++.++.. .+.++..++..++
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef 355 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF 355 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 789999999999999999999864 3566666655443
No 437
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.90 E-value=0.088 Score=56.75 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
+-.++++|.||+|||++|+.++..++
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 33578999999999999999998865
No 438
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.88 E-value=0.13 Score=59.50 Aligned_cols=42 Identities=31% Similarity=0.343 Sum_probs=33.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh-cC-CceEEEeccchh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LG-HDTKHFNVGKYR 391 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~-~g-i~t~v~n~d~yR 391 (753)
++.+|.|+|..|+||||++.+|+.++.. .| .+.-++..|.||
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 3569999999999999999999988753 34 366677777764
No 439
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.83 E-value=0.69 Score=53.15 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=28.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhc--CCceEEEeccc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGK 389 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~--gi~t~v~n~d~ 389 (753)
-++++|-||+|||+|+++++..+... +.++..++..+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 38999999999999999999988654 34444455443
No 440
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=0.31 Score=53.93 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=25.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
.|.=|+|.|.||+|||-+|+++|....+-
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~At 212 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDAT 212 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCce
Confidence 57789999999999999999999776543
No 441
>PHA02542 41 41 helicase; Provisional
Probab=92.81 E-value=0.75 Score=53.38 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=37.3
Q ss_pred cccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 340 ADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 340 ~~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
.|.+++..-...-+|++.|-||.|||++|..++......|.++-+|+.+
T Consensus 179 LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLE 227 (473)
T PHA02542 179 LNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISME 227 (473)
T ss_pred HHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEecc
Confidence 3556622334566999999999999999999998876567788788764
No 442
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.80 E-value=0.43 Score=52.72 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.+-.++++|.||+|||++++.+.+.|.
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 445689999999999999999999885
No 443
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=92.80 E-value=0.094 Score=50.42 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=18.1
Q ss_pred EEEEccCCCCHHHHHHHHHH
Q 004453 354 IVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r 373 (753)
|+++|.||+|||||..++..
T Consensus 3 i~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78889999999999999874
No 444
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=92.79 E-value=0.089 Score=59.48 Aligned_cols=37 Identities=27% Similarity=0.405 Sum_probs=29.7
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
.+.-=|++.|-||+||||+|++|++++...|.=++.+
T Consensus 261 eraeGILIAG~PGaGKsTFaqAlAefy~~~GkiVKTm 297 (604)
T COG1855 261 ERAEGILIAGAPGAGKSTFAQALAEFYASQGKIVKTM 297 (604)
T ss_pred hhhcceEEecCCCCChhHHHHHHHHHHHhcCcEEeec
Confidence 3444588899999999999999999998887544433
No 445
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=92.78 E-value=0.42 Score=46.09 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=18.5
Q ss_pred EEEEccCCCCHHHHHHHHHH
Q 004453 354 IVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r 373 (753)
|+++|.||+|||||.+.|..
T Consensus 3 v~ivG~~~~GKStl~~~l~~ 22 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISN 22 (170)
T ss_pred eEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999974
No 446
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.76 E-value=0.67 Score=50.55 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=29.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
+..|+++|-+||||||++++|.+++.......+++..++.++
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~E 173 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRE 173 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchh
Confidence 347889999999999999999998764211223444455544
No 447
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=92.72 E-value=0.1 Score=58.28 Aligned_cols=115 Identities=23% Similarity=0.343 Sum_probs=63.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh-------hcCCceEEEeccchhhhhcCCCCCCCCCCC-------CCHHH---H
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-------WLGHDTKHFNVGKYRRLKHGVNQSADFFRA-------DNPEG---M 412 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~-------~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~-------~~~~~---~ 412 (753)
+.-++.++|-.||||||+++.|.--.. |.|-.++--+.++||+.......+.-.|+. .++.. +
T Consensus 348 rGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~ 427 (546)
T COG4615 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKW 427 (546)
T ss_pred cCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHH
Confidence 455888999999999999999975442 445555556678999976443332211211 12222 1
Q ss_pred HHHHHHHH-HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHH
Q 004453 413 EARNEVAA-LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRD 473 (753)
Q Consensus 413 ~~~~~vA~-~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~ 473 (753)
-.+.+++. ..+ .+|...-.+=....+.|-..+..+.+.. +++.++=++.|++
T Consensus 428 LqrLel~~ktsl--------~d~~fs~~kLStGQkKRlAll~AllEeR-~Ilv~DEWAADQD 480 (546)
T COG4615 428 LQRLELAHKTSL--------NDGRFSNLKLSTGQKKRLALLLALLEER-DILVLDEWAADQD 480 (546)
T ss_pred HHHHHHhhhhcc--------cCCcccccccccchHHHHHHHHHHHhhC-CeEEeehhhccCC
Confidence 12222222 112 2566666666666666666666663322 3444443554433
No 448
>PRK05595 replicative DNA helicase; Provisional
Probab=92.72 E-value=1.1 Score=51.60 Aligned_cols=116 Identities=15% Similarity=0.149 Sum_probs=65.3
Q ss_pred ccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHh-hcCCceEEEeccchhh----hhcCCCCCC---CCCC-CCCHHH
Q 004453 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRR----LKHGVNQSA---DFFR-ADNPEG 411 (753)
Q Consensus 341 ~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~-~~gi~t~v~n~d~yRr----~~~g~~~~~---~~~~-~~~~~~ 411 (753)
|.+++.. ...-+|++.|-||.|||++|..++..+. ..|.++-+|+..-=.+ ++......- .+.. .-+++.
T Consensus 192 d~~~~G~-~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~~a~~~~v~~~~~~~~~l~~~e 270 (444)
T PRK05595 192 DAKTSGF-QKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKLLCSEANVDMLRLRTGNLEDKD 270 (444)
T ss_pred HHhcCCC-CCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHH
Confidence 4444422 3456999999999999999999998765 3477777787652211 111110000 0111 112322
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCceEEEEE
Q 004453 412 MEARNEVAALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCKIIFLE 466 (753)
Q Consensus 412 ~~~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~-~~R~~l~~l-~~~~~~vifIE 466 (753)
+..+.+.+. .+.+ ....|.|..+.+. +-|..++.+ .++++.+++|.
T Consensus 271 ~~~~~~~~~--------~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvID 318 (444)
T PRK05595 271 WENIARASG--------PLAA-AKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILID 318 (444)
T ss_pred HHHHHHHHH--------HHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 322222221 2322 4567777767664 467777777 56778888886
No 449
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.71 E-value=0.3 Score=52.25 Aligned_cols=107 Identities=16% Similarity=0.123 Sum_probs=56.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc--------hhhh----h--cCCCCCCCC-CCCCCHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK--------YRRL----K--HGVNQSADF-FRADNPEGMEAR 415 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~--------yRr~----~--~g~~~~~~~-~~~~~~~~~~~~ 415 (753)
.-.+-++|-+||||||+|+.|.+-+.-.. -...|+..+ .++. + .|......+ |+.+=.-+.+.|
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 34788999999999999999998765221 123343322 2221 1 232221111 111111123445
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCCCC--CH----HHHHHHHHH-HcCCceEEEEE
Q 004453 416 NEVAALAMEDMISWMHEGGQVGIFDATNS--SR----KRRNMLMKM-AEGNCKIIFLE 466 (753)
Q Consensus 416 ~~vA~~~l~d~~~~l~~~G~vVIlDATn~--~~----~~R~~l~~l-~~~~~~vifIE 466 (753)
-.+|+...- +=..+|+|=.-. .. +....+.++ .+.+..++||-
T Consensus 118 i~IARALal--------~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIs 167 (268)
T COG4608 118 IGIARALAL--------NPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFIS 167 (268)
T ss_pred HHHHHHHhh--------CCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 556665443 456777774322 22 334445555 56788888874
No 450
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=92.71 E-value=0.062 Score=66.22 Aligned_cols=29 Identities=24% Similarity=0.180 Sum_probs=26.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcC
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~g 379 (753)
+++|.+.|.|||||||+|+.|++.|++..
T Consensus 34 ~~~i~idG~~gsGKst~~~~la~~l~~~~ 62 (863)
T PRK12269 34 TVIIALDGPAGSGKSSVCRLLASRLGAQC 62 (863)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 47999999999999999999999988654
No 451
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.68 E-value=0.83 Score=44.92 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=54.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhh--cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK--HGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~--~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~ 428 (753)
.-++.++|..|+||||+.+.|+..+....-. ..++..+..... ........|... =..+-+++..+|+..+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-v~~~g~~~~~~~~~~~~~~~i~~~~q-LS~G~~qrl~laral~~---- 99 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSGE-ILVDGKEVSFASPRDARRAGIAMVYQ-LSVGERQMVEIARALAR---- 99 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEECCcCCHHHHHhcCeEEEEe-cCHHHHHHHHHHHHHhc----
Confidence 3489999999999999999998765422211 122221110000 000000111111 11223445556665444
Q ss_pred HHhcCCeEEEEeCCCC--CHHHHHHHHHH----HcCCceEEEE
Q 004453 429 WMHEGGQVGIFDATNS--SRKRRNMLMKM----AEGNCKIIFL 465 (753)
Q Consensus 429 ~l~~~G~vVIlDATn~--~~~~R~~l~~l----~~~~~~vifI 465 (753)
+-.++|+|-.+. ....++.+.++ .+.+..++++
T Consensus 100 ----~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~ 138 (163)
T cd03216 100 ----NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFI 138 (163)
T ss_pred ----CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 678999998764 55666655554 3335555554
No 452
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=92.68 E-value=0.38 Score=54.78 Aligned_cols=67 Identities=16% Similarity=0.288 Sum_probs=47.5
Q ss_pred ccEEEecccccccccCC-----C--------cCC-CCCCCHHHHHHHHHHHHHHHHHhcCC-----------CCCEEEEc
Q 004453 560 RPILLTRHGESRDNVRG-----R--------IGG-DTILSDAGEIYAKKLANFVEKRLKSE-----------RAASIWTS 614 (753)
Q Consensus 560 r~IyLVRHGEs~~N~~~-----~--------~~G-D~pLTe~G~~QA~~La~~L~~~l~~~-----------~~~~V~tS 614 (753)
+-++|.|||-+.--... . +.. ...||.+|..+-..+|+++++.+... ....+|++
T Consensus 33 ~vvilsRHg~R~P~~~~~~~l~~~t~~~Wp~w~~~~G~LT~~G~~~~~~~G~~~r~~~~~~~ll~~~~cp~~~~v~~~a~ 112 (413)
T PRK10173 33 QVLMMSRHNLRAPLANNGSVLEQSTPNAWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAQQGLVKSGECPPPDTVYAYAN 112 (413)
T ss_pred EEEEEeecccCCCCCCcchhhhhcCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCeEEEEeC
Confidence 44778899976321111 1 111 45699999999999999988776321 12467899
Q ss_pred CcHHHHHHHHHh
Q 004453 615 TLQRTILTASPI 626 (753)
Q Consensus 615 pl~RaiqTA~~i 626 (753)
+..||++||+.+
T Consensus 113 ~~~RT~~Sa~af 124 (413)
T PRK10173 113 SLQRTVATAQFF 124 (413)
T ss_pred CchHHHHHHHHH
Confidence 999999999887
No 453
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=92.65 E-value=0.46 Score=48.53 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
-|+++|++|+|||+|..+|...
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~ 23 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTG 23 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcC
Confidence 3789999999999999888754
No 454
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=92.64 E-value=0.49 Score=45.61 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=19.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
-|+++|.||+|||++..+|...
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~ 23 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRA 23 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcC
Confidence 4789999999999999999764
No 455
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.63 E-value=0.95 Score=43.65 Aligned_cols=95 Identities=18% Similarity=0.147 Sum_probs=54.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l 430 (753)
.-++.++|.+|+||||+.+.|+..+.-..-. ..++. . ++ . .|...-+ .+-+++..+|+..+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~~-~-~~--i------~~~~~lS-~G~~~rv~laral~~------ 87 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTWGS-T-VK--I------GYFEQLS-GGEKMRLALAKLLLE------ 87 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceE-EEECC-e-EE--E------EEEccCC-HHHHHHHHHHHHHhc------
Confidence 3488999999999999999998765421111 11211 1 11 1 1111111 223445556666554
Q ss_pred hcCCeEEEEeCCCC--CHHHHHHHHHH-HcCCceEEEE
Q 004453 431 HEGGQVGIFDATNS--SRKRRNMLMKM-AEGNCKIIFL 465 (753)
Q Consensus 431 ~~~G~vVIlDATn~--~~~~R~~l~~l-~~~~~~vifI 465 (753)
+-.++|+|-.+. ....+..+.++ .+.+..++++
T Consensus 88 --~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~ 123 (144)
T cd03221 88 --NPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILV 123 (144)
T ss_pred --CCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 678999998754 56667777666 4444444443
No 456
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=92.57 E-value=0.097 Score=61.46 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=26.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
++.+++|+|.||+||||||+.|++.|...
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 45699999999999999999999999865
No 457
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.51 E-value=0.063 Score=51.43 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=18.5
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhh
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
|++-|.||.|||++|++|++.++.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 678999999999999999999764
No 458
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=0.3 Score=58.19 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=30.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 393 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~ 393 (753)
-+++|+|.||.|||.|++.+|+.|+... ..+++|-+|..
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~Rkf---vR~sLGGvrDE 389 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRKF---VRISLGGVRDE 389 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCCE---EEEecCccccH
Confidence 4899999999999999999999976543 34666666553
No 459
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.49 E-value=0.66 Score=54.25 Aligned_cols=28 Identities=25% Similarity=0.166 Sum_probs=25.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
-+-+++|+|.||+||||+|+.+++.|.-
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4567899999999999999999999864
No 460
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=92.47 E-value=0.17 Score=50.58 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=25.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
+++++|+.||||||+-++|.+ ....+.+.-++
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI 33 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVI 33 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEE
Confidence 789999999999999999997 44556666655
No 461
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.45 E-value=0.56 Score=57.32 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=22.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-=++++|.||+|||++++.|++.+.
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999999999984
No 462
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.44 E-value=0.78 Score=45.73 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=22.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.-++.++|.+||||||+.+.|+..+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44899999999999999999997664
No 463
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.43 E-value=0.75 Score=54.76 Aligned_cols=27 Identities=30% Similarity=0.268 Sum_probs=24.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-+-.++|+|-||+||||+|+.|++.|.
T Consensus 37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 37 VAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 355789999999999999999999985
No 464
>PRK05748 replicative DNA helicase; Provisional
Probab=92.43 E-value=1.2 Score=51.08 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=63.8
Q ss_pred ccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhh-cCCceEEEeccc----hhhhhcCCCCCCC---CC-CCCCHHH
Q 004453 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGK----YRRLKHGVNQSAD---FF-RADNPEG 411 (753)
Q Consensus 341 ~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~-~gi~t~v~n~d~----yRr~~~g~~~~~~---~~-~~~~~~~ 411 (753)
|.+++ .-...-+|++.|-||.|||++|..++..... .|..+-+|+.+- +.+++........ +. ..-+...
T Consensus 194 D~~~~-G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e 272 (448)
T PRK05748 194 DKMTS-GLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDD 272 (448)
T ss_pred HHhcC-CCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHH
Confidence 44444 2234569999999999999999999987653 477777777642 2222211101000 10 1112222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcC-CceEEEEE
Q 004453 412 MEARNEVAALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEG-NCKIIFLE 466 (753)
Q Consensus 412 ~~~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~-~~R~~l~~l-~~~-~~~vifIE 466 (753)
+..+.+.+. .+. .....|-|..+.+. +-|..++.+ .++ ++++++|.
T Consensus 273 ~~~~~~a~~--------~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvID 321 (448)
T PRK05748 273 WPKLTIAMG--------SLS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILID 321 (448)
T ss_pred HHHHHHHHH--------HHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 222222222 232 24456656655554 467777777 454 68888886
No 465
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.40 E-value=0.44 Score=55.90 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=24.1
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
..|.=|+|+|.||||||-+|++++-.-+
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEag 570 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEAG 570 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhcc
Confidence 4577899999999999999999997643
No 466
>PRK08506 replicative DNA helicase; Provisional
Probab=92.40 E-value=1.2 Score=51.68 Aligned_cols=108 Identities=10% Similarity=0.086 Sum_probs=61.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhh----hc----CCCCCCCCCCCCCHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL----KH----GVNQSADFFRADNPEGMEARNEVAAL 421 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~----~~----g~~~~~~~~~~~~~~~~~~~~~vA~~ 421 (753)
..-+|++.|-||.|||++|..++...-..|.++-+|+.+-=... +. +.....-....-+++.+..+.+.+.
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~- 269 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACD- 269 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHH-
Confidence 45699999999999999999999876556777777776522111 11 1111000001112322322222222
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-Hc-CCceEEEEE
Q 004453 422 AMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AE-GNCKIIFLE 466 (753)
Q Consensus 422 ~l~d~~~~l~~~G~vVIlDATn~~~~-~R~~l~~l-~~-~~~~vifIE 466 (753)
.+.+ ....|.|..+.+.. -|..++.+ .+ .++.+++|.
T Consensus 270 -------~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvID 309 (472)
T PRK08506 270 -------ELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVID 309 (472)
T ss_pred -------HHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEc
Confidence 2332 45777777666554 57777776 33 357788876
No 467
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=92.39 E-value=0.17 Score=56.70 Aligned_cols=36 Identities=25% Similarity=0.138 Sum_probs=32.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
.+.+|.++|.|||||||+..+|.+.|...|++.-++
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~i 239 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLI 239 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 456999999999999999999999999988888776
No 468
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=92.36 E-value=0.15 Score=48.43 Aligned_cols=28 Identities=32% Similarity=0.209 Sum_probs=24.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
...+|+|.|=-|+||||++|.|++.|+.
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4579999999999999999999999863
No 469
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=92.35 E-value=0.19 Score=48.07 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=18.7
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 004453 354 IVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~ 374 (753)
|+++|.||+|||++..++...
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988753
No 470
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=92.35 E-value=0.59 Score=42.65 Aligned_cols=60 Identities=12% Similarity=0.199 Sum_probs=46.2
Q ss_pred EEEEEEEecccCCCceEEEecCCCccCCCCccccccCcccCCCceEEEEecC-----CCCCceeEEEEEecC
Q 004453 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVP-----PNHETLDFKFLLKPK 98 (753)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~-----~~~~~leyKf~~~~~ 98 (753)
-++|++-||. -..+.|+|+-. +|++.. .+|.......|++.+... .++.--.|||.+...
T Consensus 6 g~~FrvwAP~---A~~V~l~GdFn---~W~~~~-~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~ 70 (99)
T cd02854 6 GVTYREWAPN---AEEVYLIGDFN---NWDRNA-HPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTP 70 (99)
T ss_pred eEEEEEECCC---CCEEEEEccCC---CCCCcC-cccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeC
Confidence 3789999995 45788888764 898744 679998899999998752 233456899999863
No 471
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.35 E-value=0.54 Score=48.45 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=28.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
.-++++.|-||+|||++|.+++...-..|.++-.++.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 5688889999999999999998664344666655644
No 472
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.34 E-value=0.11 Score=55.47 Aligned_cols=32 Identities=25% Similarity=0.214 Sum_probs=24.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
-|++.|-||+|||++|+.|++.+ |.+...++.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~ 54 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR---DRPVMLING 54 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeC
Confidence 45679999999999999999875 445555543
No 473
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.33 E-value=0.14 Score=56.50 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=33.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
.-++|+|-||+||||||.+++..+-..|..+..++..++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l 222 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADEL 222 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHH
Confidence 458999999999999999999999878888877766544
No 474
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=92.33 E-value=0.39 Score=47.92 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=20.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
+..-|+++|++|+||||+..++..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~ 39 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKN 39 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhc
Confidence 346789999999999999988864
No 475
>CHL00206 ycf2 Ycf2; Provisional
Probab=92.32 E-value=0.35 Score=63.29 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=27.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
.|.=|+++|.||+|||.+|++||.... +.-..+++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~---VPFIsISgs~ 1665 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY---VPFITVFLNK 1665 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC---CceEEEEHHH
Confidence 455789999999999999999998754 4444444433
No 476
>PRK06851 hypothetical protein; Provisional
Probab=92.31 E-value=0.19 Score=56.30 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=31.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
...+++|+|.||+||||+.++|.+.+...|.+...+
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~ 64 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFL 64 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 467899999999999999999999998778776665
No 477
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.31 E-value=0.18 Score=54.65 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=29.1
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
..+-.+|.++|.||||||||...|.+.|... .++-++
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI 137 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVI 137 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEE
Confidence 3467899999999999999999999987543 244444
No 478
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.30 E-value=1.4 Score=52.89 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=25.5
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
.-+-.++|+|.||+||||+|+.|++.|..
T Consensus 36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34557999999999999999999999875
No 479
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.30 E-value=0.59 Score=49.15 Aligned_cols=138 Identities=17% Similarity=0.250 Sum_probs=67.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNE-VAALAMEDMISWMH 431 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~-vA~~~l~d~~~~l~ 431 (753)
-+++.|.||+||||-+..|++.|- | +.|-.....++.+ ++..-..++-.-+ .|..-+. |-
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LL--G--------~~~ke~vLELNAS----deRGIDvVRn~IK~FAQ~kv~-----lp 110 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELL--G--------DSYKEAVLELNAS----DERGIDVVRNKIKMFAQKKVT-----LP 110 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHh--C--------hhhhhHhhhccCc----cccccHHHHHHHHHHHHhhcc-----CC
Confidence 578899999999999999999872 2 1111111111111 1112222222111 1111111 11
Q ss_pred cC-CeEEEEeCC-CCCHHHHHHHHHH---HcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 004453 432 EG-GQVGIFDAT-NSSRKRRNMLMKM---AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (753)
Q Consensus 432 ~~-G~vVIlDAT-n~~~~~R~~l~~l---~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri 506 (753)
.+ -.++|+|-. ..+....+.++.. .....++.+ .|+..+-|-+=|+-|-. .--|+.. ...+.++.+++-.
T Consensus 111 ~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFal---aCN~s~KIiEPIQSRCA-iLRyskl-sd~qiL~Rl~~v~ 185 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFAL---ACNQSEKIIEPIQSRCA-ILRYSKL-SDQQILKRLLEVA 185 (333)
T ss_pred CCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhh---hhcchhhhhhhHHhhhH-hhhhccc-CHHHHHHHHHHHH
Confidence 11 458888854 4455555555544 333344333 57765655555555422 2335444 4556656655555
Q ss_pred hccccccc
Q 004453 507 ANYEKVYE 514 (753)
Q Consensus 507 ~~y~~~yE 514 (753)
+.-+-.|.
T Consensus 186 k~Ekv~yt 193 (333)
T KOG0991|consen 186 KAEKVNYT 193 (333)
T ss_pred HHhCCCCC
Confidence 44333343
No 480
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.30 E-value=0.4 Score=49.48 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=27.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHH-HhhcCCceEEEec
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRY-LRWLGHDTKHFNV 387 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~-L~~~gi~t~v~n~ 387 (753)
..-++++.|-||+|||++|.+++.. +...|-++..++.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 3559999999999999999887644 3333777766644
No 481
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.25 E-value=0.94 Score=60.92 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=32.3
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEe
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n 386 (753)
+...+.+++|.||+||||+.+.|.+.+...|.+...+.
T Consensus 444 s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lA 481 (1960)
T TIGR02760 444 STKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIIT 481 (1960)
T ss_pred CCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34569999999999999999999999888887776663
No 482
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.23 E-value=1.4 Score=50.77 Aligned_cols=35 Identities=26% Similarity=0.199 Sum_probs=28.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
-+++.|-||+|||||+++++..+...+.++..++.
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 35678999999999999999998766766665644
No 483
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=92.22 E-value=0.44 Score=46.55 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHHh
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
|+++|.+|+||||+..+|.....
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~ 24 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTG 24 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcC
Confidence 78899999999999999987654
No 484
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.22 E-value=0.15 Score=52.13 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=25.6
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.+++.+|.++|.+|+||||+..+|.+.+.
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34688999999999999999999988765
No 485
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.20 E-value=0.31 Score=56.64 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
|.-++|+|.||+|||++|++|+..++
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 44589999999999999999998753
No 486
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=92.18 E-value=0.21 Score=47.74 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.5
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 004453 354 IVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~ 374 (753)
|+++|.||+||||+.+++...
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999988643
No 487
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=92.13 E-value=0.25 Score=53.95 Aligned_cols=86 Identities=12% Similarity=0.128 Sum_probs=51.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc---hhhhhcCCCCC------------CCCCCCCCHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK---YRRLKHGVNQS------------ADFFRADNPEGMEAR 415 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~---yRr~~~g~~~~------------~~~~~~~~~~~~~~~ 415 (753)
+.+|+++|..|||||.||-+|++.. ..++|.|. ||..-.|.... -++-+....-.+...
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~~------~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f 77 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKGK------AEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIF 77 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC------CcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHH
Confidence 3489999999999999999999882 25777763 44332332211 123333333334445
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Q 004453 416 NEVAALAMEDMISWMHEGGQVGIFDATNSS 445 (753)
Q Consensus 416 ~~vA~~~l~d~~~~l~~~G~vVIlDATn~~ 445 (753)
.+.|..+++++ +.++...+|+-+|...
T Consensus 78 ~~~a~~~i~~i---~~~gk~PilvGGTglY 104 (300)
T PRK14729 78 YKEALKIIKEL---RQQKKIPIFVGGSAFY 104 (300)
T ss_pred HHHHHHHHHHH---HHCCCCEEEEeCchHH
Confidence 55666555533 2334557888888764
No 488
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.13 E-value=2.7 Score=47.30 Aligned_cols=144 Identities=15% Similarity=0.195 Sum_probs=71.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc--CCceEEEeccchhhhh-------cCCCCCCCCCCCCCHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKYRRLK-------HGVNQSADFFRADNPEGMEARNEVAA 420 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~--gi~t~v~n~d~yRr~~-------~g~~~~~~~~~~~~~~~~~~~~~vA~ 420 (753)
.|.-+++.|.||+|||.+++.+.+.+... ....-.+|.-.++-.. ....+.. .......+
T Consensus 41 ~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p-~~g~~~~~---------- 109 (366)
T COG1474 41 RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVP-LTGDSSLE---------- 109 (366)
T ss_pred CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCC-CCCCchHH----------
Confidence 34447788999999999999999999743 2223445543332110 0000000 00011121
Q ss_pred HHHHHHHHHHhc--CCeEEEEeCCCCCHHHH-HHHHHH----HcCCceEEEEEEEeCcHHHHHHHHHHhhhcCC-----C
Q 004453 421 LAMEDMISWMHE--GGQVGIFDATNSSRKRR-NMLMKM----AEGNCKIIFLETICNDRDIIERNIRLKIQQSP-----D 488 (753)
Q Consensus 421 ~~l~d~~~~l~~--~G~vVIlDATn~~~~~R-~~l~~l----~~~~~~vifIE~~c~d~~~i~rni~~r~~~~p-----d 488 (753)
.++.+.+.+.+ .-.+||+|-.+...... +.+..+ .....++.+|= +.++... ..++..|..++- -
T Consensus 110 -~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~-i~n~~~~-~~~ld~rv~s~l~~~~I~ 186 (366)
T COG1474 110 -ILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIA-VSNDDKF-LDYLDPRVKSSLGPSEIV 186 (366)
T ss_pred -HHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEE-EeccHHH-HHHhhhhhhhccCcceee
Confidence 23333333433 24588888887654332 444444 22234454444 3344433 444444433221 2
Q ss_pred CCCCCChHHHHHHHHHHHhc
Q 004453 489 YAEEPDFEAGLQDFKNRLAN 508 (753)
Q Consensus 489 ~~~~~d~e~al~df~~Ri~~ 508 (753)
|... +.++...-...|.+.
T Consensus 187 F~pY-~a~el~~Il~~R~~~ 205 (366)
T COG1474 187 FPPY-TAEELYDILRERVEE 205 (366)
T ss_pred eCCC-CHHHHHHHHHHHHHh
Confidence 4444 566776777777763
No 489
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=92.12 E-value=0.39 Score=47.15 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=19.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLT 372 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~ 372 (753)
..=|+++|.+|+|||++.++|.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~ 30 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLK 30 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHc
Confidence 3458899999999999998885
No 490
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.08 E-value=0.12 Score=56.72 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
+-.++++|.||+||||+|+.+++.+++
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 346789999999999999999998764
No 491
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=92.05 E-value=2.5 Score=52.24 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=22.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-++.+.|.||+|||.+++.+.+.|.
T Consensus 782 nvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4777899999999999999998885
No 492
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.03 E-value=3.3 Score=45.43 Aligned_cols=27 Identities=26% Similarity=0.237 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-+-.++|+|.||+|||++|+.+++.|.
T Consensus 35 ~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 35 IAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456889999999999999999999985
No 493
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=92.03 E-value=2 Score=40.58 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=18.2
Q ss_pred EEEEccCCCCHHHHHHHHH
Q 004453 354 IVLVGLPARGKTFTAAKLT 372 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~ 372 (753)
|+++|.+|+|||||.+.|.
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 7899999999999999998
No 494
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.00 E-value=1.3 Score=52.91 Aligned_cols=28 Identities=39% Similarity=0.453 Sum_probs=25.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
-+-.++|+|.+|+||||+|+.|++.|.-
T Consensus 45 i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 45 IAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 3558999999999999999999999864
No 495
>PRK07004 replicative DNA helicase; Provisional
Probab=91.99 E-value=1.3 Score=51.23 Aligned_cols=117 Identities=17% Similarity=0.162 Sum_probs=64.2
Q ss_pred cccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhh-cCCceEEEeccchhh----hhcCCCCC---CCCC-CCCCHH
Q 004453 340 ADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRR----LKHGVNQS---ADFF-RADNPE 410 (753)
Q Consensus 340 ~~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~-~gi~t~v~n~d~yRr----~~~g~~~~---~~~~-~~~~~~ 410 (753)
.|.+++.- .+.-+|++.|-||+|||++|..++..... .+..+-+|+..-=.. ++...... ..+. ..-+++
T Consensus 203 LD~~t~G~-~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~la~~~~v~~~~i~~g~l~~~ 281 (460)
T PRK07004 203 LDRMTSGM-HGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSVGRLDQHRMRTGRLTDE 281 (460)
T ss_pred hcccccCC-CCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhhcCCCHHHHhcCCCCHH
Confidence 34555422 34568999999999999999999987653 467777776642221 11111000 0011 111333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcC-CceEEEEE
Q 004453 411 GMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEG-NCKIIFLE 466 (753)
Q Consensus 411 ~~~~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~-~~R~~l~~l-~~~-~~~vifIE 466 (753)
....+...+. .|.+ -...|-|..+.+. +-|..++.+ .+. +..+++|.
T Consensus 282 e~~~~~~a~~--------~l~~-~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviID 331 (460)
T PRK07004 282 DWPKLTHAVQ--------KMSE-AQLFIDETGGLNPMELRSRARRLARQCGKLGLIIID 331 (460)
T ss_pred HHHHHHHHHH--------HHhc-CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 3332222222 2332 4566767766665 467777777 333 46777775
No 496
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=91.95 E-value=0.64 Score=56.89 Aligned_cols=33 Identities=18% Similarity=0.088 Sum_probs=28.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
+++++|.||+||||+.+.+...+...|.+...+
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ 402 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGA 402 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 788999999999999999998887777666554
No 497
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=91.94 E-value=0.44 Score=45.35 Aligned_cols=22 Identities=32% Similarity=0.253 Sum_probs=19.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r 373 (753)
++|+++|-|++|||||..+|..
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhC
Confidence 3789999999999999999973
No 498
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=91.94 E-value=0.11 Score=55.00 Aligned_cols=36 Identities=22% Similarity=0.133 Sum_probs=27.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
++|-++|-.||||||+|+.|.+.++. .+++.|.+-+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~-----~viDaD~iar 37 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHI-----EVIDADLVVR 37 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC-----eEEehHHHHH
Confidence 47999999999999999999976433 3466665544
No 499
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.93 E-value=0.34 Score=51.25 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=31.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
...+++++|.||||||++|.+.....-..|.++..++.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~ 59 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVST 59 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 45699999999999999998888776666777777755
No 500
>PRK09354 recA recombinase A; Provisional
Probab=91.91 E-value=1 Score=50.19 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=29.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
+..++.+.|.|||||||||-+++......|-.+-.++.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~ 96 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 96 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 46699999999999999999887666555656655544
Done!