Query 004453
Match_columns 753
No_of_seqs 472 out of 2998
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 01:40:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004453.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004453hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2axn_A 6-phosphofructo-2-kinas 100.0 1.9E-70 6.6E-75 627.4 42.9 395 348-751 32-434 (520)
2 1bif_A 6-phosphofructo-2-kinas 100.0 8.1E-69 2.8E-73 606.9 42.5 417 323-751 13-437 (469)
3 1h2e_A Phosphatase, YHFR; hydr 100.0 2E-33 6.8E-38 284.1 20.3 187 560-750 2-196 (207)
4 2a6p_A Possible phosphoglycera 100.0 6.4E-33 2.2E-37 280.9 20.3 190 552-750 3-197 (208)
5 1fzt_A Phosphoglycerate mutase 100.0 7.1E-33 2.4E-37 280.5 19.7 188 553-743 1-201 (211)
6 3kkk_A Phosphoglycerate mutase 100.0 7.6E-32 2.6E-36 280.6 18.1 192 554-747 6-234 (258)
7 3gp3_A 2,3-bisphosphoglycerate 100.0 2.2E-31 7.6E-36 277.2 19.9 189 556-746 6-231 (257)
8 1e58_A Phosphoglycerate mutase 100.0 2.3E-31 8E-36 275.7 18.8 182 559-742 2-220 (249)
9 3hjg_A Putative alpha-ribazole 100.0 1.3E-31 4.5E-36 272.3 15.6 187 557-751 3-198 (213)
10 4emb_A 2,3-bisphosphoglycerate 100.0 3.5E-31 1.2E-35 278.7 18.8 191 558-750 26-253 (274)
11 3d8h_A Glycolytic phosphoglyce 100.0 8.3E-31 2.9E-35 275.2 21.0 185 559-745 20-241 (267)
12 2hhj_A Bisphosphoglycerate mut 100.0 5.5E-31 1.9E-35 276.4 19.0 183 557-741 1-224 (267)
13 1qhf_A Protein (phosphoglycera 100.0 8.4E-31 2.9E-35 270.1 17.6 184 560-746 1-221 (240)
14 1yfk_A Phosphoglycerate mutase 100.0 1.5E-30 5E-35 272.5 18.2 183 558-742 2-223 (262)
15 4eo9_A 2,3-bisphosphoglycerate 100.0 8.4E-31 2.9E-35 275.2 15.2 185 559-745 27-246 (268)
16 1rii_A 2,3-bisphosphoglycerate 100.0 1.3E-30 4.5E-35 274.0 16.5 182 558-741 3-219 (265)
17 2qni_A AGR_C_517P, uncharacter 100.0 8.5E-30 2.9E-34 260.6 20.0 178 554-741 16-199 (219)
18 1v37_A Phosphoglycerate mutase 100.0 3.4E-30 1.2E-34 254.7 11.5 164 560-745 1-166 (177)
19 3r7a_A Phosphoglycerate mutase 100.0 6.9E-30 2.4E-34 262.6 14.1 182 558-749 12-222 (237)
20 3e9c_A ZGC:56074; histidine ph 100.0 2.9E-29 1E-33 263.1 14.6 176 558-741 2-227 (265)
21 3f3k_A Uncharacterized protein 100.0 4.2E-29 1.4E-33 261.7 13.2 193 557-749 3-252 (265)
22 3dcy_A Regulator protein; OMIM 100.0 5.7E-29 1.9E-33 262.2 14.1 179 554-740 3-248 (275)
23 3d4i_A STS-2 protein; PGM, 2H- 100.0 3.4E-28 1.2E-32 255.3 14.2 187 556-747 6-251 (273)
24 3c7t_A Ecdysteroid-phosphate p 99.9 1.4E-27 5E-32 249.4 17.7 181 557-741 2-237 (263)
25 3mbk_A Ubiquitin-associated an 99.9 5.3E-27 1.8E-31 245.2 11.8 183 560-746 1-241 (264)
26 3mxo_A Serine/threonine-protei 99.9 4.7E-25 1.6E-29 221.6 18.6 171 556-750 7-189 (202)
27 3eoz_A Putative phosphoglycera 99.9 9.8E-26 3.4E-30 229.2 9.7 173 557-750 19-201 (214)
28 1ujc_A Phosphohistidine phosph 99.9 1E-21 3.4E-26 191.0 18.8 145 560-750 1-150 (161)
29 2rfl_A Putative phosphohistidi 99.8 5.3E-21 1.8E-25 188.0 11.3 137 559-741 8-152 (173)
30 3fjy_A Probable MUTT1 protein; 99.7 7.2E-18 2.5E-22 184.4 15.4 160 554-750 177-349 (364)
31 1ac0_A Glucoamylase; hydrolase 99.7 4E-18 1.4E-22 155.6 7.9 90 28-121 4-97 (108)
32 2z0b_A GDE5, KIAA1434, putativ 99.7 8.4E-18 2.9E-22 158.8 10.3 91 26-118 4-108 (131)
33 3f2i_A ALR0221 protein; alpha- 99.7 4E-17 1.4E-21 160.9 13.2 144 560-741 1-144 (172)
34 3bmv_A Cyclomaltodextrin gluca 99.6 1.5E-15 5.2E-20 179.0 11.3 96 27-126 580-679 (683)
35 1cyg_A Cyclodextrin glucanotra 99.6 1.8E-15 6.2E-20 178.3 11.5 97 27-126 576-676 (680)
36 4hbz_A Putative phosphohistidi 99.6 6E-15 2.1E-19 147.2 13.3 137 558-740 18-165 (186)
37 1d3c_A Cyclodextrin glycosyltr 99.6 2E-15 6.8E-20 178.1 11.2 96 27-126 583-682 (686)
38 1vem_A Beta-amylase; beta-alph 99.5 3.8E-14 1.3E-18 161.7 11.5 96 27-126 416-514 (516)
39 2vn4_A Glucoamylase; hydrolase 99.4 2.8E-13 9.5E-18 157.2 12.9 89 27-119 493-585 (599)
40 1gcy_A Glucan 1,4-alpha-maltot 99.4 2.3E-14 8E-19 164.0 0.0 91 27-118 427-519 (527)
41 1qho_A Alpha-amylase; glycosid 99.4 6.8E-13 2.3E-17 156.5 11.2 90 27-119 578-675 (686)
42 3zvl_A Bifunctional polynucleo 99.3 5.6E-12 1.9E-16 140.3 10.6 138 348-527 255-396 (416)
43 1ly1_A Polynucleotide kinase; 99.3 1.8E-11 6.2E-16 118.2 12.2 120 351-483 2-127 (181)
44 3a4m_A L-seryl-tRNA(SEC) kinas 99.2 1.1E-10 3.8E-15 121.4 15.2 116 350-482 3-120 (260)
45 2rhm_A Putative kinase; P-loop 99.2 3.6E-10 1.2E-14 110.5 17.8 123 350-484 4-127 (193)
46 1ltq_A Polynucleotide kinase; 99.1 3.1E-10 1.1E-14 119.5 13.5 121 351-483 2-127 (301)
47 2yvu_A Probable adenylyl-sulfa 99.1 4.3E-10 1.5E-14 110.2 13.3 119 349-479 11-130 (186)
48 1m8p_A Sulfate adenylyltransfe 99.1 8.2E-10 2.8E-14 127.7 15.0 140 326-477 371-512 (573)
49 1gvn_B Zeta; postsegregational 99.0 2.8E-09 9.6E-14 112.8 16.3 153 348-508 30-187 (287)
50 1qhx_A CPT, protein (chloramph 99.0 2.8E-09 9.5E-14 103.1 12.5 123 351-482 3-133 (178)
51 1x6v_B Bifunctional 3'-phospho 99.0 2.3E-09 7.9E-14 124.7 14.1 120 349-480 50-170 (630)
52 1m7g_A Adenylylsulfate kinase; 99.0 2.5E-09 8.5E-14 107.2 12.5 117 350-477 24-148 (211)
53 3uie_A Adenylyl-sulfate kinase 99.0 4.6E-09 1.6E-13 104.4 13.2 117 349-477 23-139 (200)
54 2gks_A Bifunctional SAT/APS ki 98.9 3.7E-09 1.3E-13 121.6 12.9 141 325-479 346-487 (546)
55 2p5t_B PEZT; postsegregational 98.9 4.4E-09 1.5E-13 108.8 11.4 126 348-483 29-158 (253)
56 3t61_A Gluconokinase; PSI-biol 98.8 5E-09 1.7E-13 104.0 7.4 113 351-483 18-132 (202)
57 1tev_A UMP-CMP kinase; ploop, 98.8 2.4E-08 8.3E-13 97.2 11.8 150 350-515 2-161 (196)
58 2pez_A Bifunctional 3'-phospho 98.8 5E-08 1.7E-12 94.8 13.6 118 350-479 4-122 (179)
59 2bwj_A Adenylate kinase 5; pho 98.8 5.9E-08 2E-12 95.1 14.2 156 350-527 11-179 (199)
60 2vli_A Antibiotic resistance p 98.8 1.6E-08 5.4E-13 98.1 9.8 117 350-482 4-125 (183)
61 2c95_A Adenylate kinase 1; tra 98.8 3.3E-08 1.1E-12 96.7 11.3 157 350-527 8-176 (196)
62 3lw7_A Adenylate kinase relate 98.7 6E-08 2.1E-12 92.1 11.7 119 352-483 2-123 (179)
63 1knq_A Gluconate kinase; ALFA/ 98.7 6.1E-08 2.1E-12 93.6 11.3 112 350-482 7-124 (175)
64 1qf9_A UMP/CMP kinase, protein 98.7 1.1E-07 3.6E-12 92.4 12.6 145 350-515 5-158 (194)
65 2cdn_A Adenylate kinase; phosp 98.7 4E-08 1.4E-12 97.3 9.7 156 348-527 17-184 (201)
66 4eun_A Thermoresistant glucoki 98.7 5.2E-08 1.8E-12 96.8 10.5 111 350-482 28-145 (200)
67 3vaa_A Shikimate kinase, SK; s 98.7 1.7E-08 5.9E-13 100.2 6.7 129 351-498 25-153 (199)
68 3trf_A Shikimate kinase, SK; a 98.6 2.3E-08 8E-13 97.3 6.0 138 351-510 5-147 (185)
69 1ukz_A Uridylate kinase; trans 98.6 1.3E-06 4.3E-11 86.3 17.3 120 349-483 13-142 (203)
70 3umf_A Adenylate kinase; rossm 98.5 6.4E-07 2.2E-11 91.2 13.4 161 344-527 22-196 (217)
71 1aky_A Adenylate kinase; ATP:A 98.5 1.8E-07 6.3E-12 94.0 9.0 36 350-390 3-38 (220)
72 1kht_A Adenylate kinase; phosp 98.5 1.8E-07 6.1E-12 90.8 8.5 40 351-390 3-42 (192)
73 2iyv_A Shikimate kinase, SK; t 98.5 1E-07 3.5E-12 92.7 6.6 134 353-509 4-140 (184)
74 3cm0_A Adenylate kinase; ATP-b 98.5 2.8E-07 9.5E-12 89.6 9.5 115 350-483 3-127 (186)
75 1nks_A Adenylate kinase; therm 98.5 4E-07 1.4E-11 88.3 10.5 39 352-390 2-40 (194)
76 3tlx_A Adenylate kinase 2; str 98.5 2.7E-07 9.1E-12 95.0 8.3 160 349-527 27-226 (243)
77 3dl0_A Adenylate kinase; phosp 98.5 1E-07 3.5E-12 95.3 4.9 161 353-527 2-197 (216)
78 3fb4_A Adenylate kinase; psych 98.4 3.6E-07 1.2E-11 91.2 8.7 159 353-527 2-197 (216)
79 3kb2_A SPBC2 prophage-derived 98.4 2.6E-06 8.7E-11 81.2 13.1 35 353-392 3-37 (173)
80 3be4_A Adenylate kinase; malar 98.4 5E-07 1.7E-11 90.9 8.2 119 351-483 5-133 (217)
81 2xb4_A Adenylate kinase; ATP-b 98.3 9.1E-07 3.1E-11 89.5 8.8 116 353-483 2-127 (223)
82 2plr_A DTMP kinase, probable t 98.3 4.8E-06 1.6E-10 82.0 13.4 30 350-379 3-32 (213)
83 2pt5_A Shikimate kinase, SK; a 98.3 5.5E-07 1.9E-11 86.0 6.2 133 353-508 2-136 (168)
84 4eaq_A DTMP kinase, thymidylat 98.3 7.4E-06 2.5E-10 83.6 14.9 34 350-384 25-58 (229)
85 3sr0_A Adenylate kinase; phosp 98.3 4.1E-06 1.4E-10 84.5 12.0 148 352-517 1-173 (206)
86 1zd8_A GTP:AMP phosphotransfer 98.3 2.2E-07 7.4E-12 94.0 2.2 36 350-390 6-41 (227)
87 3cr8_A Sulfate adenylyltranfer 98.2 3.5E-06 1.2E-10 97.0 12.1 119 349-480 367-487 (552)
88 1nn5_A Similar to deoxythymidy 98.2 1.7E-05 5.7E-10 78.5 15.4 37 350-386 8-44 (215)
89 1e6c_A Shikimate kinase; phosp 98.2 1.5E-06 5.1E-11 83.2 7.4 39 353-396 4-42 (173)
90 2bdt_A BH3686; alpha-beta prot 98.2 9.8E-06 3.3E-10 79.1 13.3 112 352-482 3-122 (189)
91 1via_A Shikimate kinase; struc 98.2 9.6E-07 3.3E-11 85.3 4.7 39 353-396 6-44 (175)
92 2ze6_A Isopentenyl transferase 98.2 9.9E-06 3.4E-10 83.8 12.5 34 352-390 2-35 (253)
93 1ak2_A Adenylate kinase isoenz 98.1 4.7E-06 1.6E-10 84.7 8.1 37 349-390 14-50 (233)
94 3nwj_A ATSK2; P loop, shikimat 98.1 4.4E-06 1.5E-10 86.8 7.7 136 352-510 49-198 (250)
95 2wwf_A Thymidilate kinase, put 98.1 1E-05 3.5E-10 79.9 9.3 37 350-386 9-45 (212)
96 1e4v_A Adenylate kinase; trans 98.0 5.1E-06 1.8E-10 83.1 6.9 33 353-390 2-34 (214)
97 2z0h_A DTMP kinase, thymidylat 98.0 7.2E-05 2.5E-09 72.8 15.0 33 352-384 1-33 (197)
98 1zuh_A Shikimate kinase; alpha 98.0 4.8E-06 1.6E-10 79.7 6.2 40 352-396 8-47 (168)
99 2pbr_A DTMP kinase, thymidylat 98.0 1.1E-05 3.7E-10 78.3 7.6 30 353-382 2-31 (195)
100 3iij_A Coilin-interacting nucl 97.9 4.4E-06 1.5E-10 80.9 4.0 38 350-392 10-47 (180)
101 4edh_A DTMP kinase, thymidylat 97.9 0.00033 1.1E-08 70.8 17.8 36 350-385 5-40 (213)
102 1kag_A SKI, shikimate kinase I 97.9 6.2E-06 2.1E-10 79.0 4.8 39 351-394 4-42 (173)
103 1g8f_A Sulfate adenylyltransfe 97.9 7.5E-06 2.6E-10 93.3 6.1 67 323-389 367-435 (511)
104 2qor_A Guanylate kinase; phosp 97.9 4.3E-05 1.5E-09 75.8 11.0 27 350-376 11-37 (204)
105 2laa_A Beta/alpha-amylase; SBD 97.9 2.1E-05 7.3E-10 70.9 7.4 79 26-118 2-81 (104)
106 4tmk_A Protein (thymidylate ki 97.9 0.00046 1.6E-08 69.8 18.2 30 351-380 3-32 (213)
107 1uj2_A Uridine-cytidine kinase 97.9 5.2E-05 1.8E-09 77.9 11.1 44 349-392 20-68 (252)
108 1zak_A Adenylate kinase; ATP:A 97.9 1.6E-05 5.3E-10 79.9 6.6 31 350-380 4-34 (222)
109 3lv8_A DTMP kinase, thymidylat 97.9 0.00017 5.8E-09 74.2 14.5 36 350-385 26-62 (236)
110 1gtv_A TMK, thymidylate kinase 97.8 1.4E-05 4.7E-10 79.2 4.7 32 353-384 2-33 (214)
111 1zp6_A Hypothetical protein AT 97.7 0.00015 5.3E-09 70.3 11.5 40 350-392 8-47 (191)
112 3gmt_A Adenylate kinase; ssgci 97.7 6.7E-05 2.3E-09 77.0 8.4 147 349-517 6-187 (230)
113 3tr0_A Guanylate kinase, GMP k 97.7 0.00024 8.3E-09 69.6 11.9 26 351-376 7-32 (205)
114 2jaq_A Deoxyguanosine kinase; 97.7 0.00016 5.4E-09 70.6 10.3 25 353-377 2-26 (205)
115 2grj_A Dephospho-COA kinase; T 97.6 0.00012 4.1E-09 72.9 8.8 40 348-392 9-48 (192)
116 3a8t_A Adenylate isopentenyltr 97.6 0.00021 7.3E-09 77.2 10.3 43 343-390 32-74 (339)
117 3hdt_A Putative kinase; struct 97.6 0.00027 9.1E-09 72.1 10.3 30 350-379 13-42 (223)
118 4gp7_A Metallophosphoesterase; 97.6 0.00053 1.8E-08 66.3 12.0 132 350-508 8-140 (171)
119 3fdi_A Uncharacterized protein 97.6 6.4E-05 2.2E-09 75.2 5.6 29 351-379 6-34 (201)
120 2f6r_A COA synthase, bifunctio 97.6 0.00063 2.1E-08 71.3 13.5 38 349-392 73-110 (281)
121 3v9p_A DTMP kinase, thymidylat 97.5 0.00035 1.2E-08 71.5 10.9 36 350-385 24-63 (227)
122 1y63_A LMAJ004144AAA protein; 97.5 0.00039 1.3E-08 67.7 10.1 38 350-392 9-47 (184)
123 1vht_A Dephospho-COA kinase; s 97.5 0.00088 3E-08 66.7 12.5 37 350-392 3-39 (218)
124 3crm_A TRNA delta(2)-isopenten 97.4 0.0011 3.9E-08 71.1 13.7 35 351-390 5-39 (323)
125 4hlc_A DTMP kinase, thymidylat 97.4 0.0053 1.8E-07 61.5 17.8 33 352-385 3-35 (205)
126 3tau_A Guanylate kinase, GMP k 97.4 6.6E-05 2.3E-09 74.9 3.3 27 350-376 7-33 (208)
127 2bbw_A Adenylate kinase 4, AK4 97.4 0.0012 4E-08 67.3 12.5 31 349-379 25-55 (246)
128 2qt1_A Nicotinamide riboside k 97.4 0.0011 3.6E-08 65.5 11.7 38 349-390 19-56 (207)
129 3a00_A Guanylate kinase, GMP k 97.3 0.00033 1.1E-08 68.4 7.6 25 352-376 2-26 (186)
130 3ld9_A DTMP kinase, thymidylat 97.3 0.00025 8.7E-09 72.3 6.9 36 349-384 19-55 (223)
131 3dm5_A SRP54, signal recogniti 97.3 0.00063 2.1E-08 76.2 10.5 44 349-392 98-141 (443)
132 3ake_A Cytidylate kinase; CMP 97.3 0.00061 2.1E-08 66.7 9.0 36 353-393 4-39 (208)
133 2if2_A Dephospho-COA kinase; a 97.2 0.00047 1.6E-08 67.7 6.6 34 353-392 3-36 (204)
134 1ex7_A Guanylate kinase; subst 97.2 0.0018 6E-08 64.2 10.5 24 353-376 3-26 (186)
135 4i1u_A Dephospho-COA kinase; s 97.1 0.0034 1.2E-07 63.4 12.6 119 349-482 7-152 (210)
136 2v54_A DTMP kinase, thymidylat 97.1 0.00058 2E-08 66.8 6.3 26 350-375 3-28 (204)
137 3hjn_A DTMP kinase, thymidylat 97.1 0.0078 2.7E-07 59.8 14.5 34 352-385 1-34 (197)
138 1jjv_A Dephospho-COA kinase; P 97.0 0.0042 1.4E-07 61.0 12.0 35 352-392 3-37 (206)
139 3r20_A Cytidylate kinase; stru 97.0 0.00068 2.3E-08 69.6 6.4 38 350-392 8-45 (233)
140 2j41_A Guanylate kinase; GMP, 97.0 0.0018 6E-08 63.3 8.7 25 351-375 6-30 (207)
141 3kl4_A SRP54, signal recogniti 97.0 0.0024 8.2E-08 71.3 10.6 44 349-392 95-138 (433)
142 1s96_A Guanylate kinase, GMP k 96.8 0.0068 2.3E-07 61.3 11.5 120 351-482 16-150 (219)
143 1vma_A Cell division protein F 96.8 0.0062 2.1E-07 64.9 11.3 43 349-391 102-144 (306)
144 1a7j_A Phosphoribulokinase; tr 96.7 0.00071 2.4E-08 71.4 3.8 43 350-392 4-46 (290)
145 2xxa_A Signal recognition part 96.7 0.0049 1.7E-07 68.8 10.0 44 349-392 98-142 (433)
146 1uf9_A TT1252 protein; P-loop, 96.6 0.0006 2E-08 66.5 2.1 39 348-392 5-43 (203)
147 2j37_W Signal recognition part 96.6 0.0074 2.5E-07 68.6 11.4 44 349-392 99-142 (504)
148 3tmk_A Thymidylate kinase; pho 96.6 0.0084 2.9E-07 60.7 10.4 28 350-377 4-31 (216)
149 3ec2_A DNA replication protein 96.5 0.0059 2E-07 58.7 8.4 40 351-390 38-78 (180)
150 1rz3_A Hypothetical protein rb 96.5 0.0027 9.4E-08 62.7 6.1 43 349-391 20-62 (201)
151 1kgd_A CASK, peripheral plasma 96.5 0.0017 5.7E-08 63.1 4.3 26 351-376 5-30 (180)
152 3d3q_A TRNA delta(2)-isopenten 96.5 0.013 4.3E-07 63.5 11.2 35 351-390 7-41 (340)
153 1zu4_A FTSY; GTPase, signal re 96.4 0.015 5.1E-07 62.3 11.5 43 349-391 103-145 (320)
154 1cke_A CK, MSSA, protein (cyti 96.3 0.0015 5.1E-08 65.0 2.9 37 351-392 5-41 (227)
155 3t15_A Ribulose bisphosphate c 96.3 0.0052 1.8E-07 64.6 6.9 40 348-390 33-72 (293)
156 2ffh_A Protein (FFH); SRP54, s 96.2 0.019 6.4E-07 64.0 11.4 42 350-391 97-138 (425)
157 3syl_A Protein CBBX; photosynt 96.2 0.031 1E-06 58.1 12.2 31 350-380 66-96 (309)
158 2qby_B CDC6 homolog 3, cell di 96.1 0.019 6.4E-07 61.4 10.3 38 350-387 44-89 (384)
159 1j8m_F SRP54, signal recogniti 96.1 0.017 5.8E-07 61.1 9.7 41 351-391 98-138 (297)
160 1p5z_B DCK, deoxycytidine kina 96.0 0.0014 4.8E-08 67.5 1.0 29 348-376 21-49 (263)
161 1jbk_A CLPB protein; beta barr 96.0 0.018 6.2E-07 54.2 8.6 27 351-377 43-69 (195)
162 2px0_A Flagellar biosynthesis 96.0 0.018 6.1E-07 60.9 9.2 42 350-391 104-146 (296)
163 3c8u_A Fructokinase; YP_612366 96.0 0.0082 2.8E-07 59.4 6.2 42 349-390 20-61 (208)
164 1odf_A YGR205W, hypothetical 3 95.9 0.0061 2.1E-07 64.3 5.4 43 348-390 28-73 (290)
165 3foz_A TRNA delta(2)-isopenten 95.9 0.024 8.3E-07 60.5 9.9 35 350-389 9-43 (316)
166 3e70_C DPA, signal recognition 95.9 0.036 1.2E-06 59.6 11.1 42 349-390 127-168 (328)
167 2v1u_A Cell division control p 95.9 0.06 2E-06 57.2 12.8 38 350-387 43-86 (387)
168 2ocp_A DGK, deoxyguanosine kin 95.8 0.0045 1.5E-07 62.7 3.8 27 350-376 1-27 (241)
169 2h92_A Cytidylate kinase; ross 95.8 0.0021 7.1E-08 63.8 1.1 36 351-391 3-38 (219)
170 3ch4_B Pmkase, phosphomevalona 95.8 0.13 4.4E-06 51.5 14.1 39 350-390 10-48 (202)
171 3lnc_A Guanylate kinase, GMP k 95.8 0.018 6.1E-07 57.8 7.9 25 351-375 27-52 (231)
172 2yhs_A FTSY, cell division pro 95.8 0.019 6.3E-07 65.1 8.8 43 349-391 291-333 (503)
173 3te6_A Regulatory protein SIR3 95.8 0.038 1.3E-06 59.1 10.8 145 349-510 43-215 (318)
174 3eph_A TRNA isopentenyltransfe 95.8 0.02 6.8E-07 63.3 8.7 34 351-389 2-35 (409)
175 4e22_A Cytidylate kinase; P-lo 95.8 0.0036 1.2E-07 64.3 2.6 28 351-378 27-54 (252)
176 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.098 3.4E-06 55.6 13.8 26 350-375 44-69 (322)
177 3eie_A Vacuolar protein sortin 95.7 0.072 2.5E-06 56.4 12.5 37 350-389 50-86 (322)
178 3bos_A Putative DNA replicatio 95.7 0.0098 3.4E-07 58.8 5.4 41 351-391 52-92 (242)
179 3ney_A 55 kDa erythrocyte memb 95.7 0.014 4.8E-07 58.3 6.4 27 350-376 18-44 (197)
180 4a1f_A DNAB helicase, replicat 95.6 0.061 2.1E-06 58.0 11.7 119 341-469 37-166 (338)
181 1xjc_A MOBB protein homolog; s 95.6 0.01 3.5E-07 57.9 5.1 35 352-386 5-39 (169)
182 1l8q_A Chromosomal replication 95.6 0.045 1.5E-06 57.6 10.3 39 352-390 38-76 (324)
183 2v3c_C SRP54, signal recogniti 95.5 0.0052 1.8E-07 68.6 3.1 44 349-392 97-140 (432)
184 1q3t_A Cytidylate kinase; nucl 95.5 0.0042 1.4E-07 62.8 2.1 38 350-392 15-52 (236)
185 2z4s_A Chromosomal replication 95.5 0.084 2.9E-06 58.7 12.8 39 351-389 130-170 (440)
186 3tqc_A Pantothenate kinase; bi 95.5 0.015 5E-07 62.4 6.4 43 348-390 89-133 (321)
187 1yrb_A ATP(GTP)binding protein 95.5 0.015 5E-07 59.1 6.1 39 349-388 12-50 (262)
188 2chg_A Replication factor C sm 95.5 0.021 7.3E-07 55.1 6.9 26 354-379 41-66 (226)
189 3exa_A TRNA delta(2)-isopenten 95.5 0.013 4.4E-07 62.8 5.7 34 351-389 3-36 (322)
190 2qz4_A Paraplegin; AAA+, SPG7, 95.5 0.048 1.7E-06 55.0 9.7 35 350-387 38-72 (262)
191 1ls1_A Signal recognition part 95.4 0.057 2E-06 56.9 10.5 42 350-391 97-138 (295)
192 1u94_A RECA protein, recombina 95.4 0.053 1.8E-06 58.9 10.3 37 351-387 63-99 (356)
193 4b4t_K 26S protease regulatory 95.4 0.027 9.1E-07 62.8 7.9 28 350-377 205-232 (428)
194 2p65_A Hypothetical protein PF 95.4 0.027 9.3E-07 53.1 7.0 27 351-377 43-69 (187)
195 2cvh_A DNA repair and recombin 95.3 0.047 1.6E-06 53.5 8.7 36 351-389 20-55 (220)
196 1ofh_A ATP-dependent HSL prote 95.3 0.034 1.2E-06 57.5 7.9 37 351-390 50-86 (310)
197 2w58_A DNAI, primosome compone 95.2 0.013 4.5E-07 57.2 4.5 39 352-390 55-93 (202)
198 2qp9_X Vacuolar protein sortin 95.2 0.09 3.1E-06 56.6 11.4 36 351-389 84-119 (355)
199 1um8_A ATP-dependent CLP prote 95.2 0.022 7.5E-07 61.5 6.4 34 351-387 72-105 (376)
200 1sq5_A Pantothenate kinase; P- 95.1 0.025 8.6E-07 59.8 6.3 42 349-390 78-121 (308)
201 3h4m_A Proteasome-activating n 95.1 0.07 2.4E-06 54.8 9.6 26 351-376 51-76 (285)
202 3asz_A Uridine kinase; cytidin 95.0 0.015 5.2E-07 57.1 4.3 37 350-389 5-41 (211)
203 2vhj_A Ntpase P4, P4; non- hyd 95.0 0.045 1.6E-06 58.8 8.1 23 352-374 124-146 (331)
204 1lv7_A FTSH; alpha/beta domain 95.0 0.056 1.9E-06 54.8 8.6 25 352-376 46-70 (257)
205 4b4t_M 26S protease regulatory 95.0 0.047 1.6E-06 60.9 8.5 35 350-387 214-248 (434)
206 2kjq_A DNAA-related protein; s 95.0 0.02 6.7E-07 54.2 4.7 35 353-387 38-72 (149)
207 3b9p_A CG5977-PA, isoform A; A 95.0 0.074 2.5E-06 55.0 9.5 26 351-376 54-79 (297)
208 3d8b_A Fidgetin-like protein 1 94.9 0.15 5.1E-06 54.8 12.1 36 350-388 116-151 (357)
209 1fnn_A CDC6P, cell division co 94.9 0.17 5.8E-06 53.8 12.3 35 353-387 46-81 (389)
210 1rj9_A FTSY, signal recognitio 94.9 0.022 7.4E-07 60.5 5.2 41 350-390 101-141 (304)
211 4b4t_L 26S protease subunit RP 94.9 0.054 1.8E-06 60.5 8.5 35 350-387 214-248 (437)
212 1nd6_A Prostatic acid phosphat 94.8 0.061 2.1E-06 57.4 8.7 65 562-626 7-87 (354)
213 1d2n_A N-ethylmaleimide-sensit 94.8 0.078 2.7E-06 54.3 9.2 28 349-376 62-89 (272)
214 2q6t_A DNAB replication FORK h 94.8 0.25 8.7E-06 54.8 13.9 117 341-467 191-318 (444)
215 2zr9_A Protein RECA, recombina 94.8 0.082 2.8E-06 57.1 9.6 38 351-388 61-98 (349)
216 4b4t_J 26S protease regulatory 94.8 0.051 1.7E-06 60.1 8.0 27 351-377 182-208 (405)
217 4b4t_I 26S protease regulatory 94.8 0.059 2E-06 60.0 8.5 28 350-377 215-242 (437)
218 3b9q_A Chloroplast SRP recepto 94.7 0.027 9.3E-07 59.7 5.6 43 349-391 98-140 (302)
219 4b4t_H 26S protease regulatory 94.7 0.052 1.8E-06 60.9 7.9 28 350-377 242-269 (467)
220 3vfd_A Spastin; ATPase, microt 94.7 0.12 4.1E-06 56.2 10.7 34 351-387 148-181 (389)
221 3p32_A Probable GTPase RV1496/ 94.7 0.032 1.1E-06 60.2 5.9 41 349-389 77-117 (355)
222 3hr8_A Protein RECA; alpha and 94.6 0.17 5.8E-06 55.0 11.4 39 350-388 60-98 (356)
223 2og2_A Putative signal recogni 94.6 0.031 1.1E-06 60.8 5.5 43 349-391 155-197 (359)
224 3bh0_A DNAB-like replicative h 94.5 0.27 9.2E-06 52.0 12.6 39 350-388 67-105 (315)
225 1xp8_A RECA protein, recombina 94.5 0.21 7.1E-06 54.4 11.9 37 352-388 75-111 (366)
226 3uk6_A RUVB-like 2; hexameric 94.3 0.19 6.5E-06 53.4 11.0 27 351-377 70-96 (368)
227 1np6_A Molybdopterin-guanine d 94.3 0.042 1.4E-06 53.6 5.2 34 352-385 7-40 (174)
228 4fcw_A Chaperone protein CLPB; 94.2 0.043 1.5E-06 57.0 5.5 39 352-390 48-86 (311)
229 3pvs_A Replication-associated 94.2 0.19 6.6E-06 56.1 11.1 24 353-376 52-75 (447)
230 2z43_A DNA repair and recombin 94.2 0.16 5.5E-06 53.9 10.0 39 351-389 107-151 (324)
231 2r8r_A Sensor protein; KDPD, P 94.1 0.059 2E-06 55.0 6.1 41 349-389 4-44 (228)
232 3n70_A Transport activator; si 94.1 0.029 1E-06 52.2 3.5 34 353-387 26-59 (145)
233 1g41_A Heat shock protein HSLU 94.0 0.1 3.6E-06 58.2 8.5 27 351-377 50-76 (444)
234 1iqp_A RFCS; clamp loader, ext 94.0 0.12 3.9E-06 53.7 8.4 24 354-377 49-72 (327)
235 2qby_A CDC6 homolog 1, cell di 94.0 0.12 4.3E-06 54.5 8.8 38 350-387 44-84 (386)
236 4dzz_A Plasmid partitioning pr 94.0 0.12 4E-06 50.1 7.8 38 352-389 3-40 (206)
237 2jeo_A Uridine-cytidine kinase 94.0 0.04 1.4E-06 55.9 4.6 29 350-378 24-52 (245)
238 3ntl_A Acid glucose-1-phosphat 93.9 0.16 5.4E-06 56.0 9.5 65 562-626 11-100 (398)
239 2r6a_A DNAB helicase, replicat 93.9 0.24 8.1E-06 55.2 11.1 117 341-467 194-321 (454)
240 3bgw_A DNAB-like replicative h 93.7 0.21 7.2E-06 55.7 10.3 113 341-467 188-318 (444)
241 1dkq_A Phytase; histidine acid 93.7 0.13 4.5E-06 56.6 8.5 65 562-626 12-100 (410)
242 1v5w_A DMC1, meiotic recombina 93.7 0.24 8.2E-06 53.1 10.4 40 350-389 121-166 (343)
243 2w0m_A SSO2452; RECA, SSPF, un 93.7 0.061 2.1E-06 52.8 5.2 37 352-388 24-60 (235)
244 2qgz_A Helicase loader, putati 93.7 0.046 1.6E-06 57.9 4.5 40 351-390 152-192 (308)
245 3end_A Light-independent proto 93.5 0.07 2.4E-06 55.8 5.6 40 350-389 40-79 (307)
246 2orw_A Thymidine kinase; TMTK, 93.5 0.061 2.1E-06 52.6 4.8 35 351-385 3-37 (184)
247 2r2a_A Uncharacterized protein 93.5 0.054 1.8E-06 54.0 4.3 40 351-390 5-50 (199)
248 3u61_B DNA polymerase accessor 93.4 0.11 3.9E-06 54.3 7.1 27 350-376 47-73 (324)
249 1njg_A DNA polymerase III subu 93.4 0.045 1.5E-06 53.3 3.7 26 352-377 46-71 (250)
250 3it3_A Acid phosphatase; HAP, 93.4 0.2 6.8E-06 53.9 9.1 66 561-626 11-92 (342)
251 2bjv_A PSP operon transcriptio 93.4 0.053 1.8E-06 55.3 4.4 38 353-390 31-68 (265)
252 3lda_A DNA repair protein RAD5 93.4 0.3 1E-05 53.8 10.6 39 351-389 178-222 (400)
253 2ga8_A Hypothetical 39.9 kDa p 93.3 0.056 1.9E-06 58.8 4.5 28 351-378 24-51 (359)
254 3aez_A Pantothenate kinase; tr 93.3 0.056 1.9E-06 57.5 4.4 29 349-377 88-116 (312)
255 2dyk_A GTP-binding protein; GT 93.2 0.026 9E-07 51.9 1.4 22 353-374 3-24 (161)
256 3cf0_A Transitional endoplasmi 93.1 0.044 1.5E-06 57.5 3.3 26 351-376 49-74 (301)
257 1sxj_B Activator 1 37 kDa subu 93.1 0.11 3.8E-06 53.8 6.3 24 354-377 45-68 (323)
258 2xtp_A GTPase IMAP family memb 93.1 0.26 8.7E-06 50.0 8.8 26 349-374 20-45 (260)
259 2dr3_A UPF0273 protein PH0284; 93.0 0.092 3.2E-06 52.2 5.3 38 351-388 23-60 (247)
260 2x8a_A Nuclear valosin-contain 93.0 0.049 1.7E-06 56.7 3.4 23 354-376 47-69 (274)
261 1z0n_A 5'-AMP-activated protei 93.0 0.15 5.1E-06 44.9 6.0 53 30-95 10-62 (96)
262 2www_A Methylmalonic aciduria 93.0 0.12 4E-06 55.8 6.5 41 348-388 71-111 (349)
263 1ixz_A ATP-dependent metallopr 92.9 0.051 1.7E-06 55.1 3.4 23 354-376 52-74 (254)
264 1q57_A DNA primase/helicase; d 92.9 0.48 1.6E-05 53.3 11.7 39 350-388 241-280 (503)
265 2wsm_A Hydrogenase expression/ 92.8 0.12 4.1E-06 50.8 5.7 35 350-385 29-63 (221)
266 3hws_A ATP-dependent CLP prote 92.8 0.05 1.7E-06 58.5 3.2 34 351-387 51-84 (363)
267 2ce7_A Cell division protein F 92.8 0.2 6.8E-06 56.5 8.2 34 354-390 52-85 (476)
268 1lvg_A Guanylate kinase, GMP k 92.8 0.049 1.7E-06 53.6 2.8 25 352-376 5-29 (198)
269 1ye8_A Protein THEP1, hypothet 92.8 0.062 2.1E-06 52.3 3.5 24 353-376 2-25 (178)
270 3ug7_A Arsenical pump-driving 92.7 0.12 4.1E-06 55.7 6.0 41 349-389 24-64 (349)
271 2wnh_A 3-phytase; histidine ac 92.7 0.19 6.6E-06 55.4 7.8 65 562-626 20-108 (418)
272 3zq6_A Putative arsenical pump 92.6 0.15 5.3E-06 54.1 6.7 39 351-389 14-52 (324)
273 2p67_A LAO/AO transport system 92.5 0.12 4.2E-06 55.3 5.7 40 350-389 55-94 (341)
274 2f1r_A Molybdopterin-guanine d 92.4 0.066 2.3E-06 52.0 3.2 33 353-385 4-36 (171)
275 2b8t_A Thymidine kinase; deoxy 92.4 0.13 4.5E-06 52.2 5.5 38 349-386 10-47 (223)
276 1zj6_A ADP-ribosylation factor 92.3 0.2 6.9E-06 47.6 6.5 25 349-373 14-38 (187)
277 2r62_A Cell division protease 92.3 0.042 1.4E-06 56.0 1.7 24 354-377 47-70 (268)
278 1tue_A Replication protein E1; 92.3 0.065 2.2E-06 54.1 2.9 25 352-376 59-83 (212)
279 1in4_A RUVB, holliday junction 92.2 0.068 2.3E-06 57.0 3.3 25 352-376 52-76 (334)
280 2eyu_A Twitching motility prot 92.2 0.75 2.6E-05 47.4 11.1 29 350-378 24-52 (261)
281 2c3v_A Alpha-amylase G-6; carb 92.2 0.09 3.1E-06 47.1 3.5 76 28-117 9-85 (102)
282 1w5s_A Origin recognition comp 92.2 0.92 3.2E-05 48.5 12.3 28 350-377 49-78 (412)
283 2gza_A Type IV secretion syste 92.2 0.25 8.5E-06 53.4 7.7 139 352-501 176-317 (361)
284 3cf2_A TER ATPase, transitiona 92.2 0.11 3.7E-06 62.2 5.3 36 349-387 236-271 (806)
285 1iy2_A ATP-dependent metallopr 92.1 0.074 2.5E-06 54.8 3.4 23 354-376 76-98 (278)
286 4dcu_A GTP-binding protein ENG 92.1 0.13 4.3E-06 57.4 5.5 38 433-470 104-142 (456)
287 1svi_A GTP-binding protein YSX 92.1 0.39 1.3E-05 45.7 8.2 24 350-373 22-45 (195)
288 3a1s_A Iron(II) transport prot 92.1 0.32 1.1E-05 49.9 8.1 109 350-469 4-120 (258)
289 2woo_A ATPase GET3; tail-ancho 92.0 0.14 4.7E-06 54.7 5.4 41 350-390 18-58 (329)
290 1cr0_A DNA primase/helicase; R 92.0 0.14 4.9E-06 53.1 5.4 38 351-388 35-73 (296)
291 3cf2_A TER ATPase, transitiona 92.0 0.26 8.9E-06 59.0 8.2 27 351-377 511-537 (806)
292 2ehv_A Hypothetical protein PH 92.0 0.15 5E-06 50.8 5.2 38 351-388 30-68 (251)
293 2c9o_A RUVB-like 1; hexameric 91.9 0.078 2.7E-06 59.1 3.5 36 351-387 63-98 (456)
294 2i1q_A DNA repair and recombin 91.9 0.45 1.5E-05 50.1 9.1 25 350-374 97-121 (322)
295 3czq_A Putative polyphosphate 91.8 0.094 3.2E-06 55.7 3.7 37 349-385 84-120 (304)
296 1xx6_A Thymidine kinase; NESG, 91.7 0.2 6.8E-06 49.5 5.7 37 350-386 7-43 (191)
297 3iqw_A Tail-anchored protein t 91.6 0.17 5.8E-06 54.4 5.5 38 351-388 16-53 (334)
298 1sxj_A Activator 1 95 kDa subu 91.6 0.11 3.9E-06 58.7 4.3 36 351-389 77-112 (516)
299 3czp_A Putative polyphosphate 91.5 0.23 7.8E-06 56.3 6.7 110 349-484 41-170 (500)
300 1dek_A Deoxynucleoside monopho 91.5 0.11 3.6E-06 53.5 3.6 25 352-376 2-26 (241)
301 2qmh_A HPR kinase/phosphorylas 91.4 0.085 2.9E-06 52.9 2.7 26 351-376 34-59 (205)
302 3pfi_A Holliday junction ATP-d 91.4 0.095 3.2E-06 55.3 3.3 24 353-376 57-80 (338)
303 1pzn_A RAD51, DNA repair and r 91.4 1.1 3.6E-05 48.3 11.6 26 350-375 130-155 (349)
304 2i3b_A HCR-ntpase, human cance 91.3 0.14 4.9E-06 50.3 4.2 31 353-383 3-33 (189)
305 3hu3_A Transitional endoplasmi 91.3 0.24 8.3E-06 55.9 6.6 37 351-390 238-274 (489)
306 3k53_A Ferrous iron transport 91.2 0.32 1.1E-05 49.9 7.0 24 351-374 3-26 (271)
307 1tf7_A KAIC; homohexamer, hexa 91.2 0.47 1.6E-05 53.7 9.0 37 351-387 281-317 (525)
308 2hf9_A Probable hydrogenase ni 91.1 0.22 7.6E-06 48.9 5.5 28 350-377 37-64 (226)
309 1znw_A Guanylate kinase, GMP k 91.1 0.12 4E-06 51.0 3.4 26 351-376 20-45 (207)
310 3pqc_A Probable GTP-binding pr 91.1 1.4 4.9E-05 41.4 11.0 25 350-374 22-46 (195)
311 1z6g_A Guanylate kinase; struc 91.0 0.094 3.2E-06 52.4 2.7 25 351-375 23-47 (218)
312 3ea0_A ATPase, para family; al 91.0 0.25 8.7E-06 49.2 5.8 41 350-390 4-45 (245)
313 3i8s_A Ferrous iron transport 91.0 0.29 1E-05 50.6 6.4 24 351-374 3-26 (274)
314 2wjg_A FEOB, ferrous iron tran 91.0 0.17 5.8E-06 47.9 4.3 26 348-373 4-29 (188)
315 1sxj_D Activator 1 41 kDa subu 90.9 0.12 4.2E-06 54.4 3.5 23 354-376 61-83 (353)
316 2zts_A Putative uncharacterize 90.9 0.21 7.1E-06 49.6 5.1 37 351-387 30-67 (251)
317 4a74_A DNA repair and recombin 90.9 0.13 4.4E-06 50.6 3.5 27 350-376 24-50 (231)
318 2vp4_A Deoxynucleoside kinase; 90.9 0.09 3.1E-06 52.8 2.4 26 349-374 18-43 (230)
319 1qwo_A Phytase; alpha barrel, 90.8 0.49 1.7E-05 52.4 8.4 46 581-626 101-149 (442)
320 2qm8_A GTPase/ATPase; G protei 90.8 0.25 8.5E-06 53.0 5.8 38 350-387 54-91 (337)
321 1r6b_X CLPA protein; AAA+, N-t 90.7 0.53 1.8E-05 55.6 9.1 35 353-390 490-524 (758)
322 3kjh_A CO dehydrogenase/acetyl 90.7 0.14 4.9E-06 50.8 3.6 36 354-389 3-38 (254)
323 1g8p_A Magnesium-chelatase 38 90.6 0.082 2.8E-06 55.7 1.8 23 354-376 48-70 (350)
324 3jvv_A Twitching mobility prot 90.6 0.39 1.3E-05 52.0 7.2 27 352-378 124-150 (356)
325 3k9g_A PF-32 protein; ssgcid, 90.6 0.2 6.8E-06 51.0 4.6 40 350-390 27-66 (267)
326 1g3q_A MIND ATPase, cell divis 90.5 0.25 8.5E-06 49.0 5.2 39 351-389 3-41 (237)
327 3lxx_A GTPase IMAP family memb 90.5 0.46 1.6E-05 47.5 7.2 26 349-374 27-52 (239)
328 3nme_A Ptpkis1 protein, SEX4 g 90.4 0.55 1.9E-05 49.4 8.0 71 28-115 167-238 (294)
329 1sxj_C Activator 1 40 kDa subu 90.4 0.14 4.8E-06 54.4 3.5 24 354-377 49-72 (340)
330 2r44_A Uncharacterized protein 90.4 0.093 3.2E-06 55.3 2.0 24 353-376 48-71 (331)
331 2ph1_A Nucleotide-binding prot 90.4 0.3 1E-05 49.8 5.8 41 350-390 18-58 (262)
332 3pxi_A Negative regulator of g 90.4 0.21 7.3E-06 59.1 5.3 42 349-390 518-560 (758)
333 2woj_A ATPase GET3; tail-ancho 90.3 0.25 8.4E-06 53.4 5.3 40 350-389 17-58 (354)
334 3co5_A Putative two-component 90.3 0.085 2.9E-06 49.0 1.5 23 354-376 30-52 (143)
335 1svm_A Large T antigen; AAA+ f 90.3 0.15 5.2E-06 55.7 3.7 26 351-376 169-194 (377)
336 1ojl_A Transcriptional regulat 90.3 0.16 5.5E-06 53.5 3.8 39 352-390 26-64 (304)
337 1hqc_A RUVB; extended AAA-ATPa 90.2 0.12 4.2E-06 53.8 2.7 25 352-376 39-63 (324)
338 2zan_A Vacuolar protein sortin 90.1 0.14 4.6E-06 57.0 3.1 25 351-375 167-191 (444)
339 2afh_E Nitrogenase iron protei 90.1 0.29 9.8E-06 50.6 5.4 38 353-390 4-41 (289)
340 1cp2_A CP2, nitrogenase iron p 90.0 0.3 1E-05 49.6 5.4 37 353-389 3-39 (269)
341 3iby_A Ferrous iron transport 89.9 0.46 1.6E-05 48.8 6.7 22 353-374 3-24 (256)
342 3cmw_A Protein RECA, recombina 89.9 0.6 2.1E-05 60.0 9.1 40 350-389 731-770 (1706)
343 3cwq_A Para family chromosome 89.9 0.32 1.1E-05 48.1 5.4 38 352-390 2-39 (209)
344 3q9l_A Septum site-determining 89.9 0.3 1E-05 49.1 5.2 39 351-389 3-41 (260)
345 3rhf_A Putative polyphosphate 89.9 0.43 1.5E-05 50.2 6.5 110 349-484 73-202 (289)
346 1sxj_E Activator 1 40 kDa subu 89.8 0.16 5.6E-06 53.6 3.4 26 350-376 36-61 (354)
347 1hyq_A MIND, cell division inh 89.7 0.36 1.2E-05 48.9 5.7 39 351-389 3-41 (263)
348 1n0w_A DNA repair protein RAD5 89.7 0.18 6E-06 50.1 3.3 24 351-374 24-47 (243)
349 1u0j_A DNA replication protein 89.7 0.16 5.4E-06 53.0 3.0 29 350-378 103-131 (267)
350 3la6_A Tyrosine-protein kinase 89.6 0.41 1.4E-05 50.1 6.2 42 349-390 91-132 (286)
351 1jr3_A DNA polymerase III subu 89.6 0.19 6.5E-06 53.3 3.6 26 352-377 39-64 (373)
352 4aee_A Alpha amylase, catalyti 89.5 0.43 1.5E-05 56.2 6.9 61 26-95 13-73 (696)
353 3io3_A DEHA2D07832P; chaperone 89.5 0.3 1E-05 52.8 5.1 38 351-388 18-57 (348)
354 3cmu_A Protein RECA, recombina 89.5 1.2 4E-05 58.2 11.3 49 340-388 1415-1464(2050)
355 3bfv_A CAPA1, CAPB2, membrane 89.5 0.38 1.3E-05 49.8 5.8 40 351-390 83-122 (271)
356 3czp_A Putative polyphosphate 89.5 0.44 1.5E-05 54.0 6.7 110 349-484 298-427 (500)
357 3m6a_A ATP-dependent protease 89.4 0.19 6.3E-06 57.5 3.6 26 351-376 108-133 (543)
358 2v9p_A Replication protein E1; 89.4 0.21 7.1E-06 53.1 3.7 25 351-375 126-150 (305)
359 1htw_A HI0065; nucleotide-bind 89.3 0.27 9.2E-06 47.0 4.1 26 350-375 32-57 (158)
360 1ihu_A Arsenical pump-driving 89.2 0.3 1E-05 56.1 5.2 39 351-389 8-46 (589)
361 2dhr_A FTSH; AAA+ protein, hex 89.1 0.3 1E-05 55.4 4.9 32 354-388 67-98 (499)
362 1nrj_B SR-beta, signal recogni 89.0 0.22 7.6E-06 48.5 3.4 28 348-375 9-36 (218)
363 3k4q_A 3-phytase A; PHYA, 3-ph 89.0 0.73 2.5E-05 51.4 8.0 46 581-626 102-150 (444)
364 2chq_A Replication factor C sm 88.9 0.22 7.5E-06 51.4 3.5 23 354-376 41-63 (319)
365 3bc1_A RAS-related protein RAB 88.9 0.29 9.9E-06 46.1 4.0 26 348-373 8-33 (195)
366 3cio_A ETK, tyrosine-protein k 88.8 0.52 1.8E-05 49.5 6.3 39 351-389 105-143 (299)
367 3iev_A GTP-binding protein ERA 88.7 1.5 5E-05 46.1 9.7 25 349-373 8-32 (308)
368 1g5t_A COB(I)alamin adenosyltr 88.5 1.6 5.6E-05 43.3 9.3 92 349-444 27-131 (196)
369 1wf3_A GTP-binding protein; GT 88.4 1.8 6.3E-05 45.4 10.2 22 352-373 8-29 (301)
370 1nlf_A Regulatory protein REPA 88.3 0.28 9.5E-06 50.6 3.7 26 351-376 30-55 (279)
371 2j9r_A Thymidine kinase; TK1, 88.3 0.55 1.9E-05 47.4 5.8 38 349-386 26-63 (214)
372 2oze_A ORF delta'; para, walke 88.3 0.4 1.4E-05 49.6 5.0 41 351-391 35-77 (298)
373 3pxg_A Negative regulator of g 88.3 0.23 8E-06 55.5 3.3 25 353-377 203-227 (468)
374 3con_A GTPase NRAS; structural 88.3 0.3 1E-05 46.3 3.7 26 349-374 19-44 (190)
375 1ypw_A Transitional endoplasmi 88.2 0.93 3.2E-05 54.3 8.7 27 350-376 237-263 (806)
376 1upt_A ARL1, ADP-ribosylation 88.2 0.38 1.3E-05 44.4 4.2 24 350-373 6-29 (171)
377 1z06_A RAS-related protein RAB 88.2 0.31 1.1E-05 46.4 3.7 25 349-373 18-42 (189)
378 3fkq_A NTRC-like two-domain pr 88.1 0.47 1.6E-05 51.3 5.6 39 350-388 143-181 (373)
379 2gj8_A MNME, tRNA modification 88.1 0.3 1E-05 46.2 3.6 25 350-374 3-27 (172)
380 1z0f_A RAB14, member RAS oncog 88.1 0.34 1.2E-05 45.0 3.9 26 349-374 13-38 (179)
381 2hjg_A GTP-binding protein ENG 88.0 0.58 2E-05 51.6 6.3 22 352-373 4-25 (436)
382 2wji_A Ferrous iron transport 87.9 0.32 1.1E-05 45.4 3.6 23 351-373 3-25 (165)
383 2lkc_A Translation initiation 87.7 0.37 1.3E-05 44.9 3.9 25 349-373 6-30 (178)
384 1z2a_A RAS-related protein RAB 87.7 0.36 1.2E-05 44.3 3.7 25 350-374 4-28 (168)
385 2ce2_X GTPase HRAS; signaling 87.7 0.36 1.2E-05 43.9 3.7 24 351-374 3-26 (166)
386 3e1s_A Exodeoxyribonuclease V, 87.7 0.42 1.4E-05 55.0 5.1 34 352-385 205-238 (574)
387 1c9k_A COBU, adenosylcobinamid 87.5 0.25 8.6E-06 48.5 2.7 22 353-374 1-22 (180)
388 1oix_A RAS-related protein RAB 87.5 0.34 1.2E-05 46.7 3.6 26 350-375 28-53 (191)
389 1m7b_A RND3/RHOE small GTP-bin 87.5 0.36 1.2E-05 45.8 3.7 26 349-374 5-30 (184)
390 1p6x_A Thymidine kinase; P-loo 87.4 0.21 7.3E-06 53.7 2.2 29 350-378 6-34 (334)
391 4dhe_A Probable GTP-binding pr 87.3 0.96 3.3E-05 44.0 6.8 37 434-470 118-155 (223)
392 2ewv_A Twitching motility prot 87.3 0.39 1.3E-05 52.2 4.2 29 350-378 135-163 (372)
393 3cmu_A Protein RECA, recombina 87.2 2.4 8.4E-05 55.3 12.1 40 350-389 1080-1119(2050)
394 1wcv_1 SOJ, segregation protei 87.2 0.35 1.2E-05 49.1 3.6 40 351-390 7-46 (257)
395 2pt7_A CAG-ALFA; ATPase, prote 87.2 1.2 4.2E-05 47.4 8.1 26 352-377 172-197 (330)
396 3tqf_A HPR(Ser) kinase; transf 87.2 0.28 9.7E-06 48.1 2.8 24 351-374 16-39 (181)
397 1kao_A RAP2A; GTP-binding prot 87.2 0.4 1.4E-05 43.7 3.7 23 351-373 3-25 (167)
398 2ged_A SR-beta, signal recogni 87.1 0.38 1.3E-05 45.7 3.7 26 349-374 46-71 (193)
399 2erx_A GTP-binding protein DI- 87.1 0.39 1.3E-05 44.2 3.6 24 350-373 2-25 (172)
400 3upu_A ATP-dependent DNA helic 86.9 0.48 1.6E-05 52.7 4.9 28 353-380 47-74 (459)
401 1ihu_A Arsenical pump-driving 86.9 0.64 2.2E-05 53.3 6.1 41 349-389 325-365 (589)
402 3nbx_X ATPase RAVA; AAA+ ATPas 86.8 0.18 6.3E-06 57.1 1.4 24 353-376 43-66 (500)
403 3ihw_A Centg3; RAS, centaurin, 86.7 0.49 1.7E-05 45.2 4.2 27 348-374 17-43 (184)
404 2xj4_A MIPZ; replication, cell 86.6 0.51 1.8E-05 48.8 4.6 39 351-389 5-43 (286)
405 2nzj_A GTP-binding protein REM 86.5 0.45 1.5E-05 44.1 3.7 24 350-373 3-26 (175)
406 2hxs_A RAB-26, RAS-related pro 86.5 0.52 1.8E-05 43.9 4.1 24 350-373 5-28 (178)
407 3cmw_A Protein RECA, recombina 86.3 2.5 8.6E-05 54.4 11.4 40 350-389 382-421 (1706)
408 1qvr_A CLPB protein; coiled co 86.2 0.41 1.4E-05 57.6 4.1 39 352-390 589-627 (854)
409 1u8z_A RAS-related protein RAL 86.2 0.49 1.7E-05 43.2 3.7 24 351-374 4-27 (168)
410 4dsu_A GTPase KRAS, isoform 2B 86.2 0.47 1.6E-05 44.6 3.7 25 350-374 3-27 (189)
411 3clv_A RAB5 protein, putative; 86.0 0.64 2.2E-05 43.8 4.6 26 349-374 5-30 (208)
412 3q85_A GTP-binding protein REM 86.0 0.4 1.4E-05 44.3 3.0 21 352-372 3-23 (169)
413 1byi_A Dethiobiotin synthase; 86.0 0.78 2.7E-05 45.0 5.3 35 352-386 3-37 (224)
414 1ky3_A GTP-binding protein YPT 86.0 0.5 1.7E-05 44.0 3.7 26 349-374 6-31 (182)
415 3q72_A GTP-binding protein RAD 85.9 0.38 1.3E-05 44.3 2.8 20 353-372 4-23 (166)
416 1c1y_A RAS-related protein RAP 85.9 0.52 1.8E-05 43.2 3.7 23 351-373 3-25 (167)
417 1pui_A ENGB, probable GTP-bind 85.9 0.29 9.8E-06 47.4 2.0 25 350-374 25-49 (210)
418 1a5t_A Delta prime, HOLB; zinc 85.9 0.46 1.6E-05 50.5 3.8 27 351-377 24-50 (334)
419 3pxi_A Negative regulator of g 85.8 0.37 1.3E-05 57.1 3.3 24 353-376 203-226 (758)
420 2c78_A Elongation factor TU-A; 85.7 3.9 0.00013 44.4 11.3 27 350-376 10-36 (405)
421 2h17_A ADP-ribosylation factor 85.7 0.46 1.6E-05 44.9 3.3 25 349-373 19-43 (181)
422 1lw7_A Transcriptional regulat 85.6 0.36 1.2E-05 51.9 2.9 25 352-376 171-195 (365)
423 2f9l_A RAB11B, member RAS onco 85.6 0.5 1.7E-05 45.5 3.6 24 351-374 5-28 (199)
424 2a5j_A RAS-related protein RAB 85.5 0.67 2.3E-05 44.1 4.5 26 348-373 18-43 (191)
425 2zej_A Dardarin, leucine-rich 85.5 0.36 1.2E-05 46.0 2.5 22 352-373 3-24 (184)
426 2fn4_A P23, RAS-related protei 85.5 0.57 2E-05 43.5 3.9 25 350-374 8-32 (181)
427 2efe_B Small GTP-binding prote 85.5 0.54 1.8E-05 43.9 3.7 26 349-374 10-35 (181)
428 3th5_A RAS-related C3 botulinu 85.6 0.16 5.6E-06 49.1 0.0 25 349-373 28-52 (204)
429 4ag6_A VIRB4 ATPase, type IV s 85.4 0.71 2.4E-05 50.0 5.1 40 353-392 37-77 (392)
430 3k1j_A LON protease, ATP-depen 85.3 0.51 1.7E-05 54.5 4.1 27 353-379 62-88 (604)
431 3kta_A Chromosome segregation 85.3 0.53 1.8E-05 44.7 3.6 24 353-376 28-51 (182)
432 1of1_A Thymidine kinase; trans 85.3 0.38 1.3E-05 52.6 2.8 31 349-379 47-77 (376)
433 2gf9_A RAS-related protein RAB 85.2 0.68 2.3E-05 43.9 4.3 26 349-374 20-45 (189)
434 3tr5_A RF-3, peptide chain rel 85.2 2.8 9.5E-05 47.7 10.0 38 433-470 107-145 (528)
435 3kkq_A RAS-related protein M-R 85.1 0.62 2.1E-05 43.7 4.0 26 349-374 16-41 (183)
436 1r2q_A RAS-related protein RAB 85.1 0.55 1.9E-05 43.0 3.5 24 350-373 5-28 (170)
437 1z08_A RAS-related protein RAB 85.0 0.59 2E-05 43.0 3.7 25 350-374 5-29 (170)
438 1ek0_A Protein (GTP-binding pr 84.9 0.57 1.9E-05 42.9 3.5 24 351-374 3-26 (170)
439 1wms_A RAB-9, RAB9, RAS-relate 84.9 0.57 2E-05 43.5 3.6 24 350-373 6-29 (177)
440 1moz_A ARL1, ADP-ribosylation 84.9 0.47 1.6E-05 44.4 3.0 24 349-372 16-39 (183)
441 2gf0_A GTP-binding protein DI- 84.8 0.69 2.4E-05 43.9 4.1 24 350-373 7-30 (199)
442 2pcj_A ABC transporter, lipopr 84.6 0.44 1.5E-05 47.9 2.8 24 352-375 31-54 (224)
443 1g16_A RAS-related protein SEC 84.6 0.63 2.2E-05 42.7 3.7 23 351-373 3-25 (170)
444 1mky_A Probable GTP-binding pr 84.6 2.5 8.5E-05 46.6 9.1 25 350-374 179-203 (439)
445 1p9r_A General secretion pathw 84.6 0.76 2.6E-05 50.8 4.9 28 351-378 167-194 (418)
446 3tif_A Uncharacterized ABC tra 84.6 0.44 1.5E-05 48.3 2.8 25 351-375 31-55 (235)
447 1zd9_A ADP-ribosylation factor 84.6 0.64 2.2E-05 44.3 3.8 25 349-373 20-44 (188)
448 2g6b_A RAS-related protein RAB 84.6 0.61 2.1E-05 43.4 3.6 26 349-374 8-33 (180)
449 3lxw_A GTPase IMAP family memb 84.5 0.56 1.9E-05 47.6 3.6 25 349-373 19-43 (247)
450 3ice_A Transcription terminati 84.5 1 3.5E-05 49.6 5.8 31 353-383 176-206 (422)
451 1z0j_A RAB-22, RAS-related pro 84.5 0.61 2.1E-05 42.8 3.5 25 350-374 5-29 (170)
452 1fzq_A ADP-ribosylation factor 84.5 0.64 2.2E-05 44.1 3.8 24 350-373 15-38 (181)
453 3b85_A Phosphate starvation-in 84.5 0.46 1.6E-05 47.4 2.8 23 352-374 23-45 (208)
454 2fna_A Conserved hypothetical 84.3 0.6 2.1E-05 48.6 3.8 32 353-387 32-63 (357)
455 1r8s_A ADP-ribosylation factor 84.3 0.57 1.9E-05 42.9 3.2 21 354-374 3-23 (164)
456 3tw8_B RAS-related protein RAB 84.1 0.64 2.2E-05 43.1 3.5 25 349-373 7-31 (181)
457 2cbz_A Multidrug resistance-as 84.1 0.47 1.6E-05 48.1 2.8 26 351-376 31-56 (237)
458 3t1o_A Gliding protein MGLA; G 84.0 0.58 2E-05 44.2 3.2 27 350-376 13-39 (198)
459 2oil_A CATX-8, RAS-related pro 83.8 0.77 2.6E-05 43.6 4.0 26 349-374 23-48 (193)
460 2onk_A Molybdate/tungstate ABC 83.8 0.58 2E-05 47.7 3.3 25 352-376 25-49 (240)
461 1nij_A Hypothetical protein YJ 83.8 0.51 1.7E-05 49.9 3.0 23 353-375 6-28 (318)
462 1mh1_A RAC1; GTP-binding, GTPa 83.7 0.61 2.1E-05 43.6 3.2 24 350-373 4-27 (186)
463 2y8e_A RAB-protein 6, GH09086P 83.7 0.63 2.2E-05 43.1 3.3 24 350-373 13-36 (179)
464 3t5g_A GTP-binding protein RHE 83.7 0.59 2E-05 43.8 3.1 24 350-373 5-28 (181)
465 2p5s_A RAS and EF-hand domain 83.7 0.71 2.4E-05 44.3 3.8 25 349-373 26-50 (199)
466 2il1_A RAB12; G-protein, GDP, 83.6 0.67 2.3E-05 44.3 3.5 25 349-373 24-48 (192)
467 1e2k_A Thymidine kinase; trans 83.6 0.39 1.3E-05 51.6 2.0 30 350-379 3-32 (331)
468 3cbq_A GTP-binding protein REM 83.6 0.54 1.9E-05 45.4 2.9 24 349-372 21-44 (195)
469 1qvr_A CLPB protein; coiled co 83.6 0.68 2.3E-05 55.7 4.3 24 353-376 193-216 (854)
470 3p26_A Elongation factor 1 alp 83.5 3.5 0.00012 46.0 9.9 25 350-374 32-56 (483)
471 1dar_A EF-G, elongation factor 83.5 3.4 0.00012 48.6 10.1 38 433-470 102-140 (691)
472 2a5y_B CED-4; apoptosis; HET: 83.5 0.69 2.4E-05 52.6 4.1 24 350-373 151-174 (549)
473 2dy1_A Elongation factor G; tr 83.5 3.5 0.00012 48.2 10.1 27 350-376 8-34 (665)
474 2cxx_A Probable GTP-binding pr 83.4 0.59 2E-05 44.0 3.0 21 353-373 3-23 (190)
475 2a9k_A RAS-related protein RAL 83.4 0.72 2.5E-05 43.1 3.6 24 350-373 17-40 (187)
476 1d2e_A Elongation factor TU (E 83.4 4.3 0.00015 44.1 10.3 25 351-375 3-27 (397)
477 4g1u_C Hemin import ATP-bindin 83.3 0.53 1.8E-05 48.8 2.8 25 352-376 38-62 (266)
478 2bme_A RAB4A, RAS-related prot 83.3 0.73 2.5E-05 43.2 3.6 25 350-374 9-33 (186)
479 3vqt_A RF-3, peptide chain rel 83.3 3.6 0.00012 47.0 9.9 75 433-527 125-203 (548)
480 1ksh_A ARF-like protein 2; sma 83.2 0.73 2.5E-05 43.4 3.5 25 349-373 16-40 (186)
481 2d2e_A SUFC protein; ABC-ATPas 83.1 0.63 2.2E-05 47.5 3.3 23 352-374 30-52 (250)
482 2qen_A Walker-type ATPase; unk 83.1 0.64 2.2E-05 48.3 3.4 24 352-375 32-55 (350)
483 2fh5_B SR-beta, signal recogni 83.0 0.64 2.2E-05 45.1 3.1 25 350-374 6-30 (214)
484 2bov_A RAla, RAS-related prote 82.8 0.89 3.1E-05 43.4 4.0 25 350-374 13-37 (206)
485 1m2o_B GTP-binding protein SAR 82.7 0.68 2.3E-05 44.3 3.2 23 351-373 23-45 (190)
486 2ff7_A Alpha-hemolysin translo 82.7 0.57 2E-05 47.9 2.8 25 352-376 36-60 (247)
487 2h5e_A Peptide chain release f 82.7 3.1 0.00011 47.3 9.1 25 350-374 12-36 (529)
488 3pg5_A Uncharacterized protein 82.7 0.55 1.9E-05 50.6 2.7 40 351-390 2-41 (361)
489 1mv5_A LMRA, multidrug resista 82.7 0.69 2.3E-05 47.0 3.3 26 351-376 28-53 (243)
490 1f6b_A SAR1; gtpases, N-termin 82.6 0.77 2.6E-05 44.4 3.5 23 350-372 24-46 (198)
491 4dcu_A GTP-binding protein ENG 82.6 1 3.4E-05 50.1 4.9 24 350-373 194-217 (456)
492 1x3s_A RAS-related protein RAB 82.5 0.8 2.7E-05 43.2 3.5 25 350-374 14-38 (195)
493 1zbd_A Rabphilin-3A; G protein 82.5 0.68 2.3E-05 44.4 3.0 23 351-373 8-30 (203)
494 1b0u_A Histidine permease; ABC 82.5 0.59 2E-05 48.2 2.7 26 351-376 32-57 (262)
495 3tkl_A RAS-related protein RAB 82.4 0.94 3.2E-05 42.8 4.0 25 350-374 15-39 (196)
496 1vg8_A RAS-related protein RAB 82.4 0.85 2.9E-05 43.7 3.7 26 349-374 6-31 (207)
497 2h57_A ADP-ribosylation factor 82.3 0.66 2.3E-05 44.1 2.9 26 349-374 19-44 (190)
498 1ypw_A Transitional endoplasmi 82.3 0.42 1.4E-05 57.3 1.7 28 350-377 510-537 (806)
499 3gfo_A Cobalt import ATP-bindi 82.3 0.6 2.1E-05 48.7 2.7 25 352-376 35-59 (275)
500 3cph_A RAS-related protein SEC 82.3 0.87 3E-05 43.8 3.8 25 349-373 18-42 (213)
No 1
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=100.00 E-value=1.9e-70 Score=627.42 Aligned_cols=395 Identities=47% Similarity=0.834 Sum_probs=369.7
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~ 427 (753)
...|.+|+|+|+|||||||+|++|+++|+|.++++++|+.|++|+.+.+.....+||.+.+++.++.+++++..+++++.
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~ 111 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVK 111 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999988776556788988899999999999999999999
Q ss_pred HHHh-cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004453 428 SWMH-EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 505 (753)
Q Consensus 428 ~~l~-~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~R 505 (753)
.+|. +.|.+||+|+||..++.|+.+.++ .+.++.++||++.|++++++++|+.+++..+|+|.+. ++++++++|.+|
T Consensus 112 ~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~-d~e~~~~~~~~R 190 (520)
T 2axn_A 112 SYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDC-NSAEAMDDFMKR 190 (520)
T ss_dssp HHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTS-CHHHHHHHHHHH
T ss_pred HHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccC-CHHHHHHHHHHH
Confidence 9995 579999999999999999999887 6678899999999999999999998887778999998 899999999999
Q ss_pred HhcccccccCCCCC------ceEEEeecccCCccceeeeccccccCcceeEeeeccCCCCccEEEecccccccccCCCcC
Q 004453 506 LANYEKVYEPVDEG------SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIG 579 (753)
Q Consensus 506 i~~y~~~yEpl~e~------~yik~i~~~~~~g~~~~~n~i~gyl~~rIv~fL~n~~~~~r~IyLVRHGEs~~N~~~~~~ 579 (753)
++.|++.|||++++ +|||++|+ |+++++|+++|||++||||||||+|.++++||||||||+++|..++++
T Consensus 191 i~~y~~~Yepi~~ee~~~dl~yik~id~----g~~~~~~~~~g~l~~~~~~~l~n~~~~~~~i~LvRHGet~~n~~~~~~ 266 (520)
T 2axn_A 191 ISCYEASYQPLDPDKCDRDLSLIKVIDV----GRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGENEHNLQGRIG 266 (520)
T ss_dssp HHHHHTTCCCCCTTTTTTTSEEEEEETT----TTEEEEECCCSHHHHHHHHHHTTCCCSCCCEEEEECCCBHHHHHTBCS
T ss_pred HHhhhhhhcccChhhcccCcceEEEEcC----ccccccCCCCCCcchhhhhhhcccCCCceeEEEeecceeccccCCccC
Confidence 99999999999832 89999999 999999999999999999999999999999999999999999988999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcCCCceeeccccccccCcCCCCCHHHHHHhChH
Q 004453 580 GDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRALDEINAGVCDGMTYEEIKKNMPE 659 (753)
Q Consensus 580 GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~g~~v~~~~~L~Ei~~G~~eglt~~ei~~~~P~ 659 (753)
||.|||+.|++||+.++++|... ...++.|||||+.||+|||+++ +.++.+++.|+|+++|.|+|++++++++.||+
T Consensus 267 gD~pLt~~G~~qA~~l~~~L~~~--~~~~~~v~sSpl~Ra~qTA~~i-~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~ 343 (520)
T 2axn_A 267 GDSGLSSRGKKFASALSKFVEEQ--NLKDLRVWTSQLKSTIQTAEAL-RLPYEQWKALNEIDAGVCEELTYEEIRDTYPE 343 (520)
T ss_dssp SCCCBCHHHHHHHHHHHHHHHHH--CCSCCEEEECSSHHHHHHHHTT-TSCEEECGGGSCCCCGGGTTCBHHHHHHHCHH
T ss_pred CCcccCHHHHHHHHHHHHHHHhc--CCCCCeEEeCCcHHHHHHHHHh-CCCcEEccccccccCCcccCCcHHHHHHHCHH
Confidence 99999999999999999999876 5567899999999999999988 78899999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEE
Q 004453 660 EYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQM 739 (753)
Q Consensus 660 ~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~ 739 (753)
.+..|..+++.+++|+|||+.++.+|+.+++.++.+. ++|||||||++|++|++++++.+.+.++.+.+|++++++|++
T Consensus 344 ~~~~~~~d~~~~~~p~gEs~~~~~~Rv~~~l~~l~~~-~~vlvVsH~~~ir~ll~~ll~~~~~~~~~l~~p~~sv~~l~~ 422 (520)
T 2axn_A 344 EYALREQDKYYYRYPTGESYQDLVQRLEPVIMELERQ-ENVLVICHQAVLRCLLAYFLDKSAEEMPYLKCPLHTVLKLTP 422 (520)
T ss_dssp HHHHHHHCTTTCCCTTSCCHHHHHHHHHHHHHHHHHC-SSEEEEECHHHHHHHHHHHTTCCTTTGGGCCCCTTEEEEEEE
T ss_pred HHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHHhCC-CcEEEEEChHHHHHHHHHHhCCCHHHhhccCCCCCeEEEEEE
Confidence 9999999999999999999999999999999999875 789999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEc
Q 004453 740 GVTGVQEKRYKL 751 (753)
Q Consensus 740 ~~~g~~~~r~~l 751 (753)
.++|+.+..+.+
T Consensus 423 ~~~g~~~~~~~l 434 (520)
T 2axn_A 423 VAYGCRVESIYL 434 (520)
T ss_dssp ETTEEEEEEEEC
T ss_pred cCCCceEEEEEC
Confidence 999998877654
No 2
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=100.00 E-value=8.1e-69 Score=606.89 Aligned_cols=417 Identities=45% Similarity=0.766 Sum_probs=367.4
Q ss_pred ccccCCCcccchhhhhhcccccCCC-CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCC
Q 004453 323 TKNSMPAAAGAVAAAAVADQMLGPK-EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA 401 (753)
Q Consensus 323 ~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~ 401 (753)
...+||...+..++... ++++. ...|.+|+|+|+|||||||+|++|+++|+|.+++++.|+.|++|+...+.....
T Consensus 13 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~ 89 (469)
T 1bif_A 13 KKIFMPYSNGRPALHAS---QRGVCMTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSF 89 (469)
T ss_dssp ----------------------------CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCG
T ss_pred cceeccccccccccccc---cccccCCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcc
Confidence 34566654333222222 34443 567899999999999999999999999999999999999999999877655556
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHH
Q 004453 402 DFFRADNPEGMEARNEVAALAMEDMISWMH-EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNI 479 (753)
Q Consensus 402 ~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~-~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni 479 (753)
.+|+..+++..+.+...+..++.++..++. .+|.++|+|++|.++++|+.+.+. .+.++.++|+++.|++++++.+|+
T Consensus 90 ~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~ 169 (469)
T 1bif_A 90 EFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANI 169 (469)
T ss_dssp GGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHH
Confidence 788888888888888888888888888886 468899999999999999999887 566889999999999999999999
Q ss_pred HHhhhcCCCCCCCCChHHHHHHHHHHHhcccccccCCCCC-----ceEEEeecccCCccceeeeccccccCcceeEeeec
Q 004453 480 RLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKVYEPVDEG-----SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVN 554 (753)
Q Consensus 480 ~~r~~~~pd~~~~~d~e~al~df~~Ri~~y~~~yEpl~e~-----~yik~i~~~~~~g~~~~~n~i~gyl~~rIv~fL~n 554 (753)
.+++..+|++.+. +++++.++|.+|++.|++.|||++++ +|||++|+ |+++++|+++|||++||||||||
T Consensus 170 ~~~~~~rp~~~~~-~~e~~~~~~~~R~~~y~~~ye~l~~~~~~~~~~ik~~d~----~~~~~~~~~~g~~~~~~~~~l~n 244 (469)
T 1bif_A 170 VQVKLGSPDYVNR-DSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIMDV----GQSYVVNRVADHIQSRIVYYLMN 244 (469)
T ss_dssp HHHTTTSTTTTTS-CHHHHHHHHHHHHHHHHTTCCCCCTTTTTTSCEEEEETT----TTEEEEECCCSHHHHHHHHHHTT
T ss_pred HHhhhcCCcccCC-CHHHHHHHHHHHHHHhccEeEECCccccCCcceEEEEcC----ccceeccCccccchhhHHHHHhc
Confidence 9877778999988 89999999999999999999999852 99999999 99999999999999999999999
Q ss_pred cCCCCccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcCCCceee
Q 004453 555 THLTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQW 634 (753)
Q Consensus 555 ~~~~~r~IyLVRHGEs~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~g~~v~~~ 634 (753)
+|.++++||||||||+++|..++++||.|||+.|++||+.++++|... +..++.|||||+.||+|||+++ +.++..+
T Consensus 245 ~~~~~~~i~LvRHGet~~n~~~~~~gD~~Lt~~G~~qA~~l~~~l~~~--~~~~~~v~sSpl~Ra~qTA~~l-~~~~~~~ 321 (469)
T 1bif_A 245 IHVTPRSIYLCRHGESELNLKGRIGGDPGLSPRGREFSKHLAQFISDQ--NIKDLKVFTSQMKRTIQTAEAL-SVPYEQF 321 (469)
T ss_dssp CCCCCCCEEEEECSCBHHHHHTBCSSCCCBCHHHHHHHHHHHHHHHHH--TCTTCEEEECSSHHHHHHHTTS-SSCCEEC
T ss_pred cCCCCceEEEeccceeccccCCeeCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHh-CCCceEC
Confidence 999999999999999999999999999999999999999999999876 5678999999999999999987 7888999
Q ss_pred ccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecHHHHHHHHH
Q 004453 635 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYA 714 (753)
Q Consensus 635 ~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e~~~VLIVSHg~vIr~Lla 714 (753)
+.|+|+++|.|+|++++++.+.+|+.+..|..+++.+++|+|||+.++.+|+.+++.++.+. ++|||||||++|+++++
T Consensus 322 ~~L~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~-~~vlvVsHg~~ir~l~~ 400 (469)
T 1bif_A 322 KVLNEIDAGVCEEMTYEEIQDHYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVIMELERQ-ENVLVICHQAVMRCLLA 400 (469)
T ss_dssp GGGSCCCCGGGTTCBHHHHHHHCHHHHHHHHHCTTTCCCTTCCCHHHHHHHHHHHHHHHHHC-SSEEEEECHHHHHHHHH
T ss_pred cccccccCCccCCCCHHHHHHHCHHHHHHHhcCccccCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEeCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999764 68999999999999999
Q ss_pred HHhCCCCCCCCccccCCcEEEEEEECCCceEEEEEEc
Q 004453 715 YFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYKL 751 (753)
Q Consensus 715 ~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~~~r~~l 751 (753)
++++.+.+.++.+.+|++++++|++..++|...+|++
T Consensus 401 ~l~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 437 (469)
T 1bif_A 401 YFLDKAAEELPYLKCPLHTVLKLTPVAYGCKVESIFL 437 (469)
T ss_dssp HHTTCCTTTGGGCCCCTTEEEEEEECSSSEEEEEEEC
T ss_pred HHhCCCHHHhhcccCCCCEEEEEEEeCCCCceEEEec
Confidence 9999999999999999999999999999999999986
No 3
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=100.00 E-value=2e-33 Score=284.14 Aligned_cols=187 Identities=29% Similarity=0.362 Sum_probs=172.1
Q ss_pred ccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCceee
Q 004453 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQW 634 (753)
Q Consensus 560 r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g~~v~~~ 634 (753)
|+||||||||+.+|..++++| |.|||+.|++||+.++++|. ..+++.|||||+.||+|||+++ .+.++.+.
T Consensus 2 m~l~lvRHGet~~n~~~~~~g~~D~pLt~~G~~qA~~~~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 77 (207)
T 1h2e_A 2 TTLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLE----AVELAAIYTSTSGRALETAEIVRGGRLIPIYQD 77 (207)
T ss_dssp EEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHTT----TSCCSEEEECSSHHHHHHHHHHHTTCSCCEEEC
T ss_pred CEEEEEeCcCCcccccccCCCCCCCCCCHHHHHHHHHHHHHHc----CCCCCEEEECccHHHHHHHHHHHhcCCCCeEEC
Confidence 589999999999999888888 99999999999999998775 4689999999999999999999 45788899
Q ss_pred ccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEecHHHHHHH
Q 004453 635 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRAL 712 (753)
Q Consensus 635 ~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e--~~~VLIVSHg~vIr~L 712 (753)
+.|+|+++|.|+|++.+++.+.+|+.+..|..++..+.+|+|||+.++.+|+..++.++... +++|||||||++|+++
T Consensus 78 ~~L~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~vlvVsHg~~i~~l 157 (207)
T 1h2e_A 78 ERLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTL 157 (207)
T ss_dssp GGGSCCCCGGGTTCBHHHHHHHCHHHHHHHHHCGGGCCCSSSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEECHHHHHHH
T ss_pred cccccCCceecCCCCHHHHHHHCHHHHHHHhhCccccCCCCCccHHHHHHHHHHHHHHHHHhCCCCeEEEEcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999653 5789999999999999
Q ss_pred HHHHhCCCCCCCCccc-cCCcEEEEEEECCCceEEEEEE
Q 004453 713 YAYFADRPLKEIPHIE-TPLHTIIEIQMGVTGVQEKRYK 750 (753)
Q Consensus 713 la~llg~~~~~~~~l~-~p~~sI~~L~~~~~g~~~~r~~ 750 (753)
++++++.+...++.+. ++++++++++.+..+|....++
T Consensus 158 ~~~l~~~~~~~~~~~~~~~n~~i~~l~~~~~~~~l~~~n 196 (207)
T 1h2e_A 158 MAAFKDTPLDHLWSPPYMYGTSVTIIEVDGGTFHVAVEG 196 (207)
T ss_dssp HHHHTTCCGGGTTCSCCCCTTCEEEEEEETTEEEEEEEE
T ss_pred HHHHhCCCHHHhhhccCCCCCEEEEEEEECCEEEEEEEc
Confidence 9999999888777888 9999999999988778777765
No 4
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6.4e-33 Score=280.95 Aligned_cols=190 Identities=23% Similarity=0.255 Sum_probs=166.2
Q ss_pred eeccCCCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcCC
Q 004453 552 LVNTHLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGF 629 (753)
Q Consensus 552 L~n~~~~~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~g~ 629 (753)
|||++..+++||||||||+.+|..+++.| |.|||+.|++||+.++++|... ...++.|||||+.||+|||+++ +.
T Consensus 3 ~m~M~~~~~~l~lvRHG~t~~n~~~~~~g~~D~pLt~~G~~qA~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~~-~~ 79 (208)
T 2a6p_A 3 AMAMGVRNHRLLLLRHGETAWSTLGRHTGGTEVELTDTGRTQAELAGQLLGEL--ELDDPIVICSPRRRTLDTAKLA-GL 79 (208)
T ss_dssp ------CCCCEEEEECCCBTTGGGTBCCSSCCCCBCHHHHHHHHHHHHHHHTT--CCSSCEEEECSSHHHHHHHHHT-TC
T ss_pred ccccCCCceEEEEEeCCCCcccccCcCcCCCCCCCCHHHHHHHHHHHHHHhcC--CCCCCEEEECCcHHHHHHHHHh-CC
Confidence 56776667899999999999999888877 9999999999999999998744 3334999999999999999984 78
Q ss_pred Cc-eeeccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHc--CCCcEEEEecH
Q 004453 630 PK-IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER--QRAPVVVISHQ 706 (753)
Q Consensus 630 ~v-~~~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~--e~~~VLIVSHg 706 (753)
++ ..++.|+|+++|.|+|++.+++.+.+|+ +..|..++ |+|||+.++.+|+..++.++.+ .+++|||||||
T Consensus 80 ~~~~~~~~L~E~~~G~~eg~~~~el~~~~p~-~~~~~~~~-----p~gEs~~~~~~R~~~~l~~l~~~~~~~~vlvVsHg 153 (208)
T 2a6p_A 80 TVNEVTGLLAEWDYGSYEGLTTPQIRESEPD-WLVWTHGC-----PAGESVAQVNDRADSAVALALEHMSSRDVLFVSHG 153 (208)
T ss_dssp CCSEECGGGCCCCCGGGTTCBHHHHHTTCTT-CCHHHHCC-----TTSCCHHHHHHHHHHHHHHHHHHTTTSCEEEEECH
T ss_pred CceeeccceeecccceeCCCCHHHHHHhCcc-hhhccCCC-----CCCCCHHHHHHHHHHHHHHHHHhCCCCcEEEEeCH
Confidence 88 8999999999999999999999999998 87887664 8999999999999999999965 46789999999
Q ss_pred HHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCceEEEEEE
Q 004453 707 AVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYK 750 (753)
Q Consensus 707 ~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~~~r~~ 750 (753)
++|+++++++++.+...++.+.++++++++|+.+..++....++
T Consensus 154 ~~i~~l~~~l~~~~~~~~~~~~~~n~~v~~l~~~~~~~~l~~~n 197 (208)
T 2a6p_A 154 HFSRAVITRWVQLPLAEGSRFAMPTASIGICGFEHGVRQLAVLG 197 (208)
T ss_dssp HHHHHHHHHHTTCCGGGGGGBCCCTTEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHhCCCHHHhhhccCCCCEEEEEEEeCCceEEEEec
Confidence 99999999999998887778889999999999988888777765
No 5
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR {Schizosaccharomyces pombe} SCOP: c.60.1.1
Probab=100.00 E-value=7.1e-33 Score=280.46 Aligned_cols=188 Identities=27% Similarity=0.299 Sum_probs=169.0
Q ss_pred eccCCCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---c
Q 004453 553 VNTHLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A 627 (753)
Q Consensus 553 ~n~~~~~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~ 627 (753)
||.+..+++||||||||+.+|..++++| |.|||+.|++||+.++++|... +.+++.|||||+.||+|||+++ +
T Consensus 1 ~~~~~~~~~l~lvRHGet~~n~~~~~~g~~D~pLt~~G~~qA~~l~~~L~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~ 78 (211)
T 1fzt_A 1 MTTEAAPNLLVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLKSR--GYKFDIAFTSALQRAQKTCQIILEEV 78 (211)
T ss_dssp CCCTTSCCEEEECBCCCBHHHHHTBCCSSSCCCBCHHHHHHHHHHHHHHHHH--TCCCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEEeCCCCcccccCcccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHHHhc
Confidence 6788888999999999999998888877 9999999999999999999865 4589999999999999999999 3
Q ss_pred C---CCceeeccccccccCcCCCCCHHHHHHhChHH-HHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHc----CCCc
Q 004453 628 G---FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER----QRAP 699 (753)
Q Consensus 628 g---~~v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~-~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~----e~~~ 699 (753)
+ .++..++.|+|+++|.|+|++.+++.+.+|+. +..|..++ .+.+|+|||+.++.+|+..++.++.. .+++
T Consensus 79 ~~~~~~~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~w~~~~-~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~~~ 157 (211)
T 1fzt_A 79 GEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWRRSY-DIAPPNGESLKDTAERVLPYYKSTIVPHILKGEK 157 (211)
T ss_dssp TCTTSEEEEESTTSCCCCGGGTTCBHHHHHHHHHHHHHHHHHSSS-SCCSTTCCCHHHHHHHHHHHHHHHHTTHHHHTCC
T ss_pred CCCCCceEECcccccccCceecCCCHHHHHHhccHHHHHHHhhCC-CcCCcCCCCHHHHHHHHHHHHHHHHhhhhcCCCe
Confidence 3 67889999999999999999999999999875 66666654 78999999999999999999999854 3678
Q ss_pred EEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCc
Q 004453 700 VVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTG 743 (753)
Q Consensus 700 VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g 743 (753)
|||||||++|+++++++++.+...++.+.++++++++|+.+..+
T Consensus 158 vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~i~~l~~~~~~ 201 (211)
T 1fzt_A 158 VLIAAHGNSLRALIMDLEGLTGDQIVKRELATGVPIVYHLDKDG 201 (211)
T ss_dssp EEEESCHHHHHHHHHHHHTCCTTTSSSCCCCBSSCEEEEBCSSS
T ss_pred EEEEeChHHHHHHHHHHhCCCHHHHHhcCCCCCcEEEEEEcCCC
Confidence 99999999999999999999988888889999999999987653
No 6
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural genomics, medical STRU genomics of pathogenic protozoa, MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Probab=99.97 E-value=7.6e-32 Score=280.60 Aligned_cols=192 Identities=24% Similarity=0.328 Sum_probs=165.0
Q ss_pred ccCCCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC
Q 004453 554 NTHLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG 628 (753)
Q Consensus 554 n~~~~~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g 628 (753)
+-++.+++||||||||+.+|..++++| |+|||+.|++||+.++++|... +..++.|||||+.||+|||+++ ++
T Consensus 6 ~~~~~~~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~ 83 (258)
T 3kkk_A 6 HHHMTTYTLVLLRHGESTWNKENKFTGWTDVPLSEKGEEEAIAAGKYLKEK--NFKFDVVYTSVLKRAICTAWNVLKTAD 83 (258)
T ss_dssp ----CCEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred ccccceeEEEEEECCCccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECchHHHHHHHHHHHHhcC
Confidence 446788999999999999999999988 9999999999999999999864 5689999999999999999999 33
Q ss_pred ---CCceeeccccccccCcCCCCCHHHHHHhChHH-HHHHhcCc------------------------CCCCCCCCCCHH
Q 004453 629 ---FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYL 680 (753)
Q Consensus 629 ---~~v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~-~~~~~~d~------------------------~~~r~P~GES~~ 680 (753)
.++..++.|+|+++|.|+|++.+++.+.||+. +..|..+. ..+++|+|||+.
T Consensus 84 ~~~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~ 163 (258)
T 3kkk_A 84 LLHVPVVKTWRLNERHCGSLQGLNKSETAKKYGEEQVKIWRRSYDIPPPKLDKEDNRWPGHNVVYKNVPKDALPFTECLK 163 (258)
T ss_dssp CTTSCEEECGGGCCCCCGGGTTSBHHHHHHHTCHHHHHHHHHCSSCCCCCCCTTSTTCGGGCGGGTTSCGGGSCSCCCHH
T ss_pred CCCCCeeEccccceeccCcccCCCHHHHHHHhHHHHHHHHhhhcccCCcccccccccccccccccccccccCCCCCCCHH
Confidence 68899999999999999999999999999986 55554321 123478999999
Q ss_pred HHHHHHHHHHHHHH----cCCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCceEEE
Q 004453 681 DVIQRLEPVIIELE----RQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEK 747 (753)
Q Consensus 681 dv~~Rl~~~I~eL~----~e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~~~ 747 (753)
++.+|+..++.++. ..+++|||||||++|++|++++++.+.+.+..+.+++|++++|+.+..+....
T Consensus 164 ~~~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 234 (258)
T 3kkk_A 164 DTVERVLPFWFDHIAPDILANKKVMVAAHGNSLRGLVKHLDNLSEADVLELNIPTGVPLVYELDENLKPIK 234 (258)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCHHHHHHCCCCTTCCEEEEECTTCCEEE
T ss_pred HHHHHHHHHHHHHHhhhccCCCEEEEEcCHHHHHHHHHHHhCCCHHHHhhccCCCCceEEEEECCCCceee
Confidence 99999999999953 35789999999999999999999999888888999999999999987644333
No 7
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=99.97 E-value=2.2e-31 Score=277.17 Aligned_cols=189 Identities=23% Similarity=0.280 Sum_probs=165.0
Q ss_pred CCCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC--
Q 004453 556 HLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG-- 628 (753)
Q Consensus 556 ~~~~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g-- 628 (753)
|-.|-+.||||||||++|..++++| |+|||+.|++||+.++++|... +.+++.|||||+.||+|||+++ ++
T Consensus 6 ~~~~~~~~lvRHGeT~~N~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~ 83 (257)
T 3gp3_A 6 HHHMYKLVLIRHGESTWNKENRFTGWVDVDLTEQGNREARQAGQLLKEA--GYTFDIAYTSVLKRAIRTLWHVQDQMDLM 83 (257)
T ss_dssp ---CEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCT
T ss_pred ccceeeEEEEECCCCcccccCccCCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEeCChHHHHHHHHHHHHhcCCC
Confidence 4456889999999999999999999 9999999999999999999864 4689999999999999999999 34
Q ss_pred -CCceeeccccccccCcCCCCCHHHHHHhChHH-HHHHhcCcC------------------------CCCCCCCCCHHHH
Q 004453 629 -FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDV 682 (753)
Q Consensus 629 -~~v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~-~~~~~~d~~------------------------~~r~P~GES~~dv 682 (753)
.++.+++.|+|+++|.|+|++.+++.+.+|+. +..|..+.. .+++|+|||+.++
T Consensus 84 ~~~i~~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~~w~~~~~~~pp~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~~~ 163 (257)
T 3gp3_A 84 YVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQVLVWRRSYDTPPPALEPGDERAPYADPRYAKVPREQLPLTECLKDT 163 (257)
T ss_dssp TSCEEECGGGSCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCTTCCCCCCCTTCTTCSTTCGGGTTSCGGGSCSSCCHHHH
T ss_pred CCceeECCCccccCCccccCCCHHHHHHHhhHHHHHHHHhccccCCcccccccccccccccccccccccCCCCCCCHHHH
Confidence 78899999999999999999999999999976 555654311 2357899999999
Q ss_pred HHHHHHHHHHHHc----CCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCceEE
Q 004453 683 IQRLEPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQE 746 (753)
Q Consensus 683 ~~Rl~~~I~eL~~----e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~~ 746 (753)
.+|+..++.++.. .+++|||||||++|+++++++++.+.+.+..+.+++|++++|+++..+...
T Consensus 164 ~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~i~~ll~~l~g~~~~~~~~~~~~n~sv~~l~~~~~~~~~ 231 (257)
T 3gp3_A 164 VARVLPLWNESIAPAVKAGKQVLIAAHGNSLRALIKYLDGISDADIVGLNIPNGVPLVYELDESLTPI 231 (257)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCTTGGGGCCCCTTCCEEEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEeCcHHHHHHHHHHhCCCHHHHhhccCCCCeeEEEEECCCccee
Confidence 9999999999743 578999999999999999999999999999999999999999998765433
No 8
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Probab=99.97 E-value=2.3e-31 Score=275.74 Aligned_cols=182 Identities=25% Similarity=0.307 Sum_probs=159.4
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CC
Q 004453 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 630 (753)
Q Consensus 559 ~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g---~~ 630 (753)
|++||||||||+.+|..++++| |.|||+.|++||+.++++|... +.+++.|||||+.||+|||+++ ++ .+
T Consensus 2 M~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~l~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 79 (249)
T 1e58_A 2 VTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEE--GYSFDFAYTSVLKRAIHTLWNVLDELDQAWLP 79 (249)
T ss_dssp CEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCTTSC
T ss_pred ceEEEEEeCCCCcccccCCccCcCCCCCCHHHHHHHHHHHHHHHhc--CCCCcEEEECCcHHHHHHHHHHHHhcCCCCCC
Confidence 5899999999999999888888 9999999999999999999764 5689999999999999999998 33 67
Q ss_pred ceeeccccccccCcCCCCCHHHHHHhChHH-HHHHhcCc------------------------CCCCCCCCCCHHHHHHH
Q 004453 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQR 685 (753)
Q Consensus 631 v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~-~~~~~~d~------------------------~~~r~P~GES~~dv~~R 685 (753)
+...+.|+|+++|.|+|++.+++.+.+|.. +..|..+. ..+++|+|||+.++.+|
T Consensus 80 ~~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R 159 (249)
T 1e58_A 80 VEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDR 159 (249)
T ss_dssp EEECGGGCCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCTTCCCCCCCTTSTTCGGGSGGGTTCCTTTSCSCCCHHHHHHH
T ss_pred eeeCcccccccCcccCCCcHHHHHHHhhHHHHHHHHhccccCCcccccccccccccchhhhccccCCCCCCCCHHHHHHH
Confidence 889999999999999999999999999875 55564431 12457899999999999
Q ss_pred HHHHHHH-HHc---CCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCC
Q 004453 686 LEPVIIE-LER---QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVT 742 (753)
Q Consensus 686 l~~~I~e-L~~---e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~ 742 (753)
+..++.+ |.. .+++|||||||++|+++++++++.+...++.+.+++|++++|+.+..
T Consensus 160 v~~~l~~~i~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~n~~~~~l~~~~~ 220 (249)
T 1e58_A 160 VIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLVYEFDEN 220 (249)
T ss_dssp HHHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCHHHHHHCCCCTTCCEEEEECTT
T ss_pred HHHHHHHHHHhhccCCCEEEEEcChHHHHHHHHHHhCCCHHHHhhccCCCceeEEEEECCC
Confidence 9999999 643 56799999999999999999999888777778899999999998764
No 9
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=99.97 E-value=1.3e-31 Score=272.27 Aligned_cols=187 Identities=18% Similarity=0.201 Sum_probs=160.8
Q ss_pred CCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCc
Q 004453 557 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPK 631 (753)
Q Consensus 557 ~~~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g~~v 631 (753)
|.+++||||||||+.+|. +++| |.|||+.|++||+.+++.+ +.+++.|||||+.||+|||+++ .+.++
T Consensus 3 m~~~~i~lvRHGet~~n~--~~~g~~D~pLt~~G~~QA~~~~~~l-----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~ 75 (213)
T 3hjg_A 3 LKTLNIYLMRHGKVDAAP--GLHGQTDLKVKEAEQQQIAMAWKTK-----GYDVAGIISSPLSRCHDLAQILAEQQLLPM 75 (213)
T ss_dssp -CEEEEEEEECCCCSSCS--BCCSSSCCCCCHHHHHHHHHHHHHT-----TCCCSCEEECSSHHHHHHHHHHHHHHTCCE
T ss_pred CceeEEEEECCCCcCCCC--cccCCCCCCCCHHHHHHHHHHHHhc-----CCCCCEEEECChHHHHHHHHHHHhccCCCc
Confidence 567899999999999873 5555 9999999999999998765 3689999999999999999999 57899
Q ss_pred eeeccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC-CCcEEEEecHHHHH
Q 004453 632 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ-RAPVVVISHQAVLR 710 (753)
Q Consensus 632 ~~~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e-~~~VLIVSHg~vIr 710 (753)
.+++.|+|+++|.|+|++.+++.+.+|. +..|+.++..+++|+|||+.++.+|+..++.++..+ .++|||||||++|+
T Consensus 76 ~~~~~L~E~~~G~~eg~~~~e~~~~~~~-~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~vlvVsHg~~i~ 154 (213)
T 3hjg_A 76 TTEDDLQEMDFGDFDGMPFDLLTEHWKK-LDAFWQSPAHHSLPNAESLSTFSQRVSRAWSQIINDINDNLLIVTHGGVIR 154 (213)
T ss_dssp EECGGGSCCCCTTSTTCBTTHHHHSCCC-THHHHHCGGGCCCTTCCCHHHHHHHHHHHHHHHHHHCCSCEEEEECHHHHH
T ss_pred EEccccEeCcCCccCCcCHHHHHHhhHH-HHHHHhCcccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHH
Confidence 9999999999999999999999988764 556667888899999999999999999999998653 47899999999999
Q ss_pred HHHHHHhCCCC---CCCCccccCCcEEEEEEECCCceEEEEEEc
Q 004453 711 ALYAYFADRPL---KEIPHIETPLHTIIEIQMGVTGVQEKRYKL 751 (753)
Q Consensus 711 ~Lla~llg~~~---~~~~~l~~p~~sI~~L~~~~~g~~~~r~~l 751 (753)
++++++++.+. .....+.++++++++|+....+.....++.
T Consensus 155 ~l~~~l~g~~~~~~~~~~~~~~~n~si~~l~~~~~~~~~~~l~~ 198 (213)
T 3hjg_A 155 IILAHVLGVDWRNPQWYSTLAIGNASVTHITITIDDQIYASVRS 198 (213)
T ss_dssp HHHHHHTTCCTTCTHHHHHBCCCTTEEEEEEEEESSSEEEEECS
T ss_pred HHHHHHhCCCccccchhcccccCCCEEEEEEEeCCCCceEEEEe
Confidence 99999999882 223467899999999998777665445443
No 10
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.30A {Borrelia burgdorferi}
Probab=99.97 E-value=3.5e-31 Score=278.75 Aligned_cols=191 Identities=23% Similarity=0.249 Sum_probs=167.4
Q ss_pred CCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---C
Q 004453 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---F 629 (753)
Q Consensus 558 ~~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g---~ 629 (753)
.+++||||||||+.+|..++++| |.|||+.|++||+.+++.|... ...++.|||||+.||+|||+++ ++ .
T Consensus 26 mm~~i~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~--~~~~d~v~sSpl~Ra~qTA~~i~~~~~~~~~ 103 (274)
T 4emb_A 26 FMYKLVLVRHGESEWNKENLFTGWTDVKLSDKGIDEAVEAGLLLKQE--GYSFDIAFSSLLSRANDTLNIILRELGQSYI 103 (274)
T ss_dssp CCEEEEEEECCCBTTTTTTCCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHTTCTTS
T ss_pred hceEEEEEeCCCCcccccCcccCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCCCCC
Confidence 36899999999999999999888 9999999999999999999864 5689999999999999999999 33 5
Q ss_pred CceeeccccccccCcCCCCCHHHHHHhChHH-HHHHhcCc------------------------CCCCCCCCCCHHHHHH
Q 004453 630 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQ 684 (753)
Q Consensus 630 ~v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~-~~~~~~d~------------------------~~~r~P~GES~~dv~~ 684 (753)
++..++.|+|+++|.|+|++.+++.+.||+. +..|..+. ..+++|+|||+.++.+
T Consensus 104 ~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~pp~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~~~~~ 183 (274)
T 4emb_A 104 SVKKTWRLNERHYGALQGLNKSETAAKYGEDKVLIWRRSYDVPPMSLDESDDRHPIKDPRYKHIPKRELPSTECLKDTVA 183 (274)
T ss_dssp EEEECGGGSCCCCGGGTTCCHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTCGGGSGGGTTSCGGGSCSCCCHHHHHH
T ss_pred CeeECccccccccccccCCCHHHHHHHhHHHHHHHHHhccccCCcccccccccccccccccccccccCCCCCCCHHHHHH
Confidence 7889999999999999999999999999975 55555421 1236789999999999
Q ss_pred HHHHHHHHHH----cCCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCceEEEEEE
Q 004453 685 RLEPVIIELE----RQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYK 750 (753)
Q Consensus 685 Rl~~~I~eL~----~e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~~~r~~ 750 (753)
|+..++.++. ..+++|||||||++|++|++++++.+.+.+..+.+++|++++|+.+..++....+.
T Consensus 184 Rv~~~l~~l~~~~~~~~~~vlvVsHg~~i~~ll~~l~g~~~~~~~~~~~~n~sv~~l~~~~~~~~~~~~~ 253 (274)
T 4emb_A 184 RVIPYWTDEIAKEVLEGKKVIVAAHGNSLRALVKYFDNLSEEDVLKLNIPTGIPLVYELDKDLNPIKHYY 253 (274)
T ss_dssp HHHHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHHTCCHHHHHHCCCCTTCCEEEEECTTCCEEEEEE
T ss_pred HHHHHHHHHHhhhhcCCCEEEEEeCHHHHHHHHHHHhCCCHHHHhhccCCCCeEEEEEEcCCCcEEEeee
Confidence 9999999974 35789999999999999999999999888888999999999999988877666543
No 11
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria, glycolysis, I structural genomics consortium, SGC; 2.01A {Cryptosporidium parvum}
Probab=99.97 E-value=8.3e-31 Score=275.22 Aligned_cols=185 Identities=23% Similarity=0.328 Sum_probs=161.2
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CC
Q 004453 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 630 (753)
Q Consensus 559 ~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g---~~ 630 (753)
|++||||||||+.+|..++++| |.|||+.|++||+.++++|... +..++.|||||+.||+|||+++ ++ .+
T Consensus 20 M~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 97 (267)
T 3d8h_A 20 TYKLTLIRHGESEWNKENRFTGWTDVSLSEQGVSEAIEAGRMLLEK--GFKFDVVYTSVLKRAIMTTWTVLKELGNINCP 97 (267)
T ss_dssp CEEEEEEECCCBTTTTTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCTTSC
T ss_pred ceEEEEEeCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCCCCCC
Confidence 4799999999999999988888 9999999999999999999754 4689999999999999999998 23 67
Q ss_pred ceeeccccccccCcCCCCCHHHHHHhChHH-HHHHhcCc--------------------C----CCCCCCCCCHHHHHHH
Q 004453 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK--------------------L----RYRYPRGESYLDVIQR 685 (753)
Q Consensus 631 v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~-~~~~~~d~--------------------~----~~r~P~GES~~dv~~R 685 (753)
+.+++.|+|+++|.|+|++.+++.+.||.. +..|..+. + .+.+|+|||+.++.+|
T Consensus 98 i~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R 177 (267)
T 3d8h_A 98 IINHWRLNERHYGALQGLNKSETASKFGEDQVKIWRRSFDVPPPVLEKSDPRWPGNELIYKGICPSCLPTTECLKDTVER 177 (267)
T ss_dssp EEECGGGSCCCCGGGTTCBHHHHHHHSCHHHHHHHHHCSSCCCCCCCTTSTTSGGGSGGGTTSCGGGSCSCCCHHHHHHH
T ss_pred eeECcccccccCCcccCCCHHHHHHhhhHHHHHHHHhccccCCcccccccccccccchhhhccccCCCCCCCCHHHHHHH
Confidence 889999999999999999999999999975 45564321 1 1356899999999999
Q ss_pred HHHHHHH-HHc---CCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCceE
Q 004453 686 LEPVIIE-LER---QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQ 745 (753)
Q Consensus 686 l~~~I~e-L~~---e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~ 745 (753)
+..++.+ +.. .+++|||||||++|+++++++++.+...++.+.++++++++|+.+..+..
T Consensus 178 v~~~l~~~i~~~~~~~~~vlvVsHg~~ir~l~~~l~~~~~~~~~~~~~~n~~v~~l~~~~~~~~ 241 (267)
T 3d8h_A 178 VKPYFEDVIAPSIMSGKSVLVSAHGNSLRALLYLLEGMTPEQILEVNIPTACPLVLELDDYLKV 241 (267)
T ss_dssp HHHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHHTCCHHHHTTCCCCTTCCEEEEECTTSCE
T ss_pred HHHHHHHHHHhhccCCCeEEEEeCHHHHHHHHHHHhCCCHHHhhcccCCCCeEEEEEECCCccE
Confidence 9999999 543 56799999999999999999999988777888999999999998766444
No 12
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A {Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A* 2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Probab=99.97 E-value=5.5e-31 Score=276.43 Aligned_cols=183 Identities=26% Similarity=0.339 Sum_probs=159.9
Q ss_pred CCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc---C---
Q 004453 557 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA---G--- 628 (753)
Q Consensus 557 ~~~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~---g--- 628 (753)
|++++||||||||+.+|..++++| |.|||+.|++||+.++++|... +..++.|||||+.||+|||+++. +
T Consensus 1 M~~~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~ 78 (267)
T 2hhj_A 1 MSKYKLIMLRHGEGAWNKENRFCSWVDQKLNSEGMEEARNCGKQLKAL--NFEFDLVFTSVLNRSIHTAWLILEELGQEW 78 (267)
T ss_dssp -CCEEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCTT
T ss_pred CCceEEEEEeCCCCCccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCcCEEEECCcHHHHHHHHHHHHhcCCCC
Confidence 356899999999999999988888 9999999999999999999764 46899999999999999999992 3
Q ss_pred CCceeeccccccccCcCCCCCHHHHHHhChHH-HHHHhc--------------------CcCCC--------CCCCCCCH
Q 004453 629 FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKK--------------------DKLRY--------RYPRGESY 679 (753)
Q Consensus 629 ~~v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~-~~~~~~--------------------d~~~~--------r~P~GES~ 679 (753)
.++..++.|+|+++|.|+|++.+++.+.+|+. +..|.. ....+ .+|+|||+
T Consensus 79 ~~v~~~~~L~E~~~G~~eG~~~~e~~~~~p~~~~~~w~~~~~~~p~~~~~~~~~~~~~~~d~~~~~~~~~~~~~p~gEs~ 158 (267)
T 2hhj_A 79 VPVESSWRLNERHYGALIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEIYNDRRYKVCDVPLDQLPRSESL 158 (267)
T ss_dssp SCEEECGGGSCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTHHHHHTCGGGTSSSSCGGGSCSSCCH
T ss_pred CCeeEcccccccccCCCCCCCHHHHHHHhhHHHHHHHHhcccCCCCcccccccccccccccccccccccccCCCCCCCCH
Confidence 68889999999999999999999999999976 455532 11122 26899999
Q ss_pred HHHHHHHHHHHHH-HHc---CCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECC
Q 004453 680 LDVIQRLEPVIIE-LER---QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGV 741 (753)
Q Consensus 680 ~dv~~Rl~~~I~e-L~~---e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~ 741 (753)
.++.+|+..++.+ +.. .+++|||||||++|+++++++++.+.+.++.+.+++|++++++.+.
T Consensus 159 ~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~~ir~l~~~l~~~~~~~~~~~~~~n~s~~~~~~~~ 224 (267)
T 2hhj_A 159 KDVLERLLPYWNERIAPEVLRGKTILISAHGNSSRALLKHLEGISDEDIINITLPTGVPILLELDE 224 (267)
T ss_dssp HHHHHHHHHHHHHHTHHHHHTTCCEEEEECHHHHHHHHHHHHTCCTTGGGGCCCCTTCCEEEEECT
T ss_pred HHHHHHHHHHHHHHHHhhccCCCEEEEEcCcHHHHHHHHHHhCCCHHHhhccccCCCeEEEEEEcC
Confidence 9999999999999 643 4678999999999999999999999988888999999999999875
No 13
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=99.97 E-value=8.4e-31 Score=270.14 Aligned_cols=184 Identities=24% Similarity=0.322 Sum_probs=159.3
Q ss_pred ccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CCc
Q 004453 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FPK 631 (753)
Q Consensus 560 r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g---~~v 631 (753)
|+||||||||+.+|..++++| |.|||+.|++||+.++++|... +.+++.|||||+.||+|||+++ ++ .++
T Consensus 1 m~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 78 (240)
T 1qhf_A 1 PKLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEK--KVYPDVLYTSKLSRAIQTANIALEKADRLWIPV 78 (240)
T ss_dssp CEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHTTCTTSCE
T ss_pred CEEEEEECCCcccccCCcccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCcCEEEECCcHHHHHHHHHHHHhcCCCCCCe
Confidence 579999999999999888888 9999999999999999999764 5689999999999999999998 22 678
Q ss_pred eeeccccccccCcCCCCCHHHHHHhChHH-HHHHhcCc------------------------CCCCCCCCCCHHHHHHHH
Q 004453 632 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQRL 686 (753)
Q Consensus 632 ~~~~~L~Ei~~G~~eglt~~ei~~~~P~~-~~~~~~d~------------------------~~~r~P~GES~~dv~~Rl 686 (753)
.+.+.|+|+++|.|+|++.+++.+.+|+. +..|..+. ..+.+|+|||+.++.+|+
T Consensus 79 ~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~ 158 (240)
T 1qhf_A 79 NRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRL 158 (240)
T ss_dssp EECGGGSCCCCGGGTTCBHHHHHHHHHHHHHHHHHHCSSCCCCCCCTTSTTCCTTCGGGTTSCGGGSCSSCCHHHHHHHH
T ss_pred eeCcccccccCCcccCCcHHHHHHHhhHHHHHHHhhccccCCccccccchhhcccchhhcccccCCCCCCCCHHHHHHHH
Confidence 89999999999999999999999999865 45554321 013468999999999999
Q ss_pred HHHHHH-HHc---CCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCceEE
Q 004453 687 EPVIIE-LER---QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQE 746 (753)
Q Consensus 687 ~~~I~e-L~~---e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~~ 746 (753)
..++.+ +.. .+++|||||||++|+++++++++.+...+..+.++++++++++.+ .+|..
T Consensus 159 ~~~l~~~i~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 221 (240)
T 1qhf_A 159 LPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFELD-ENLKP 221 (240)
T ss_dssp HHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHHTCCTTTGGGCCCCTTSCEEEEBC-TTSCB
T ss_pred HHHHHHHHHhhccCCCEEEEEeCHHHHHHHHHHHhCCCHHHhhcccCCCCeeEEEEEc-CCCCe
Confidence 999998 643 467899999999999999999999998888899999999999887 34443
No 14
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET: CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Probab=99.97 E-value=1.5e-30 Score=272.45 Aligned_cols=183 Identities=23% Similarity=0.268 Sum_probs=158.8
Q ss_pred CCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---C
Q 004453 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---F 629 (753)
Q Consensus 558 ~~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g---~ 629 (753)
.|++||||||||+.+|..++++| |.|||+.|++||+.++++|... +..++.|||||+.||+|||+++ ++ .
T Consensus 2 ~M~~l~LvRHGqt~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~ 79 (262)
T 1yfk_A 2 AAYKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDA--GYEFDICFTSVQKRAIRTLWTVLDAIDQMWL 79 (262)
T ss_dssp -CEEEEEEECCCBTTTTTTBCCTTSCCCBCHHHHHHHHHHHHHHHHH--TCCCSEEEECSCHHHHHHHHHHHHHTTCTTS
T ss_pred CceEEEEEeCCCcccccccCcCCCCCCCCCHHHHHHHHHHHHHHHhC--CCCCCEEEECCcHHHHHHHHHHHHhcCCCCC
Confidence 46899999999999999999888 9999999999999999999865 5689999999999999999998 23 6
Q ss_pred CceeeccccccccCcCCCCCHHHHHHhChHH-HHHHhcCc----------------------C----CCCCCCCCCHHHH
Q 004453 630 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK----------------------L----RYRYPRGESYLDV 682 (753)
Q Consensus 630 ~v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~-~~~~~~d~----------------------~----~~r~P~GES~~dv 682 (753)
++...+.|+|+++|.|+|++.+++.+.+|+. +..|..+. + ...+|+|||+.++
T Consensus 80 ~v~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~p~~~~~~~~~~~~i~~d~~~~~~~~~~~p~gEs~~~~ 159 (262)
T 1yfk_A 80 PVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDRRYADLTEDQLPSCESLKDT 159 (262)
T ss_dssp CEEECGGGSCCCCGGGTTSBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTHHHHHTCGGGTTSCTTTSCSCCCHHHH
T ss_pred CeeeCcccccccCcccCCCcHHHHHHHccHHHHHHHHhccccCCCcccccccccccccccccccccccCCCCCCCCHHHH
Confidence 7888999999999999999999999999865 45554321 1 1256899999999
Q ss_pred HHHHHHHHHHHH----cCCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCC
Q 004453 683 IQRLEPVIIELE----RQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVT 742 (753)
Q Consensus 683 ~~Rl~~~I~eL~----~e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~ 742 (753)
.+|+.+++.++. ..+++|||||||++|++|++++++.+...++.+.+++|++++|+.+..
T Consensus 160 ~~Rv~~~l~~li~~~~~~~~~vlvVsHg~~ir~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 223 (262)
T 1yfk_A 160 IARALPFWNEEIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEAIMELNLPTGIPIVYELDKN 223 (262)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHHHHHTCCHHHHHTCCCCSSSCEEEEECTT
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEEcChHHHHHHHHHHhCCCHHHHhccCCCCCeEEEEEEcCC
Confidence 999999999952 256799999999999999999999988777788999999999998764
No 15
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.45A {Mycobacterium leprae}
Probab=99.97 E-value=8.4e-31 Score=275.18 Aligned_cols=185 Identities=25% Similarity=0.337 Sum_probs=162.2
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CC
Q 004453 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 630 (753)
Q Consensus 559 ~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g---~~ 630 (753)
+++||||||||+.+|..++++| |+|||+.|++||+.++++|.+. ...++.|||||+.||+|||+++ ++ .+
T Consensus 27 ~~~i~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 104 (268)
T 4eo9_A 27 TATLILLRHGESDWNARNLFTGWVDVGLTDKGRAEAVRSGELLAEH--NLLPDVLYTSLLRRAITTAHLALDTADWLWIP 104 (268)
T ss_dssp CEEEEEEECCCBHHHHTTCCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHTTCTTSC
T ss_pred ceEEEEEECCccccccCCCccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHHHhcCCCCCC
Confidence 4789999999999999999888 9999999999999999999765 5689999999999999999998 33 78
Q ss_pred ceeeccccccccCcCCCCCHHHHHHhChHH-HHHHhcCcCC------------------C----CCCCCCCHHHHHHHHH
Q 004453 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKLR------------------Y----RYPRGESYLDVIQRLE 687 (753)
Q Consensus 631 v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~-~~~~~~d~~~------------------~----r~P~GES~~dv~~Rl~ 687 (753)
+.+++.|+|+++|.|+|++.+++.+.||+. +..|..+... | ++|+|||+.++.+|+.
T Consensus 105 ~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~gEs~~~~~~Rv~ 184 (268)
T 4eo9_A 105 VRRSWRLNERHYGALQGLDKAVTKARYGEERFMAWRRSYDTPPPPIEKGSEFSQDADPRYTDIGGGPLTECLADVVTRFL 184 (268)
T ss_dssp EEECGGGSCCCCGGGTTCCHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTCCTTCGGGGGGTTCCSCCCHHHHHHHHH
T ss_pred eEECccccccccCCcCCCCHHHHHHHccHHHHHHhhcccccCCccccccccccccccccccccCCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999975 5566554221 1 3589999999999999
Q ss_pred HHHHHH-H---cCCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCceE
Q 004453 688 PVIIEL-E---RQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQ 745 (753)
Q Consensus 688 ~~I~eL-~---~e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~ 745 (753)
.++.++ . ..+++|||||||++|+++++++++.+.+.+..+.++++++++|+.+..+..
T Consensus 185 ~~l~~~i~~~~~~~~~vlvVsHg~~i~~l~~~l~g~~~~~~~~~~~~n~~i~~l~~~~~~~~ 246 (268)
T 4eo9_A 185 PYFTDVIVPDLRTGRTVLIVAHGNSLRALVKHLDEMSDDEVVGLNVPTGIPLRYDLDADLRP 246 (268)
T ss_dssp HHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCHHHHHTCCCCSSCCEEEEECTTSCB
T ss_pred HHHHHHHHHhccCCCEEEEEeCHHHHHHHHHHHhCCCHHHHhhccCCCCeEEEEEECCCCcE
Confidence 999884 2 256799999999999999999999998888899999999999999876543
No 16
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate mutase, SH3 domain binding, structural genom TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Probab=99.97 E-value=1.3e-30 Score=273.99 Aligned_cols=182 Identities=26% Similarity=0.360 Sum_probs=158.1
Q ss_pred CCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---C
Q 004453 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---F 629 (753)
Q Consensus 558 ~~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g---~ 629 (753)
.|++||||||||+.+|..++++| |.|||+.|++||+.+++.|.+. +..++.|||||+.||+|||+++ ++ .
T Consensus 3 ~m~~l~LvRHGet~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~ 80 (265)
T 1rii_A 3 NTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEH--DLLPDVLYTSLLRRAITTAHLALDSADRLWI 80 (265)
T ss_dssp CCCEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSCHHHHHHHHHHHHHTTCTTS
T ss_pred CceEEEEEeCCCCcccccCCccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHHHHcCCCCC
Confidence 35899999999999999999888 9999999999999999999764 5689999999999999999998 33 6
Q ss_pred CceeeccccccccCcCCCCCHHHHHHhChHH-HHHHhcCc------------C------CCC----CCCCCCHHHHHHHH
Q 004453 630 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------L------RYR----YPRGESYLDVIQRL 686 (753)
Q Consensus 630 ~v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~-~~~~~~d~------------~------~~r----~P~GES~~dv~~Rl 686 (753)
++...+.|+|+++|.|+|++.+++.+.||++ +..|..+. + .|. .|+|||+.++.+|+
T Consensus 81 ~v~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~p~gEs~~~~~~Rv 160 (265)
T 1rii_A 81 PVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADIGGGPLTECLADVVARF 160 (265)
T ss_dssp CEEECGGGSCCCCGGGTTSBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTCTTCCTTCGGGGGGTTCCSCCCHHHHHHHH
T ss_pred CeeECccccccccccccCCCHHHHHHHchHHHHHHHHhccccCCCccccccccccccchhhccCCCCCCCCCHHHHHHHH
Confidence 8889999999999999999999999999875 45564321 0 111 18999999999999
Q ss_pred HHHHHH-HHc---CCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECC
Q 004453 687 EPVIIE-LER---QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGV 741 (753)
Q Consensus 687 ~~~I~e-L~~---e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~ 741 (753)
.+++.+ |.. .+++|||||||++|++|++++++.+.+.++.+.+++|++++++.+.
T Consensus 161 ~~~l~~~i~~~~~~~~~vlvVsHg~~ir~l~~~l~~~~~~~~~~~~i~~~~~~~~~~~~ 219 (265)
T 1rii_A 161 LPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDS 219 (265)
T ss_dssp HHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCHHHHHHCCCCSSCCEEEEBCT
T ss_pred HHHHHHHHHHhccCCCeEEEEeChHHHHHHHHHHcCCCHHHHhhcCCCCCeEEEEEECC
Confidence 999998 643 5679999999999999999999998877778899999999998864
No 17
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=99.97 E-value=8.5e-30 Score=260.63 Aligned_cols=178 Identities=14% Similarity=0.097 Sum_probs=152.5
Q ss_pred ccCCCCccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCC
Q 004453 554 NTHLTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFP 630 (753)
Q Consensus 554 n~~~~~r~IyLVRHGEs~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g~~ 630 (753)
|++-.|++||||||||+.+|..+++ .|.|||+.|++||+.++++|... +++.|||||+.||+|||+++ ++.+
T Consensus 16 ~~~~~mm~l~LvRHGet~~n~~~~~-~D~pLt~~G~~QA~~l~~~L~~~----~~d~i~sSpl~Ra~qTA~~i~~~~~~~ 90 (219)
T 2qni_A 16 NLYFQGMHALYITHPQVKIDPAVPV-PEWGLSERGAERAREASRLPWAK----ALRRIVSSAETKAIETAHMLAETSGAA 90 (219)
T ss_dssp -----CCEEEEEECCCBCCCSSSCG-GGCCBCHHHHHHHHHHHTSHHHH----TCCEEEECSSHHHHHHHHHHTTTTCCE
T ss_pred hhhhcCcEEEEEeCCCCcccccCcc-CCCCcCHHHHHHHHHHHHHHhcC----CCCEEEECCcHHHHHHHHHHHHhcCCC
Confidence 4555678999999999999987776 49999999999999999988754 78999999999999999999 4678
Q ss_pred ceeeccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC---CCcEEEEecHH
Q 004453 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ---RAPVVVISHQA 707 (753)
Q Consensus 631 v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e---~~~VLIVSHg~ 707 (753)
+.+++.|+|+++|.|+|++.+++. +.+..|..++. +.+|+|||+.++.+|+..++.++..+ +++|||||||+
T Consensus 91 ~~~~~~L~E~~~G~~eg~~~~~~~----~~~~~~~~~~~-~~~p~gEs~~~~~~Rv~~~l~~l~~~~~~~~~vlvVsHg~ 165 (219)
T 2qni_A 91 IEIIEAMHENDRSATGFLPPPEFE----KAADWFFAHPE-ESFQGWERAIDAQARIVEAVKAVLDRHDARQPIAFVGHGG 165 (219)
T ss_dssp EEECGGGCCCCCGGGCCCCHHHHH----HHHHHHHHCTT-SCSTTCCCHHHHHHHHHHHHHHHHHTCCTTSCEEEEECHH
T ss_pred EEECcccccCCCccccCccHHHHH----HHHHHHHhCcc-cCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEeCHH
Confidence 889999999999999999988864 45667777654 77899999999999999999999764 25899999999
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCcEEEEEEECC
Q 004453 708 VLRALYAYFADRPLKEIPHIETPLHTIIEIQMGV 741 (753)
Q Consensus 708 vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~ 741 (753)
+|+++++++++.+...+..+.++++++++|+.+.
T Consensus 166 ~i~~l~~~l~~~~~~~~~~~~~~n~si~~l~~~~ 199 (219)
T 2qni_A 166 VGTLLKCHIEGRGISRSKDQPAGGGNLFRFSIAE 199 (219)
T ss_dssp HHHHHHHHHHTCCCCCC--CCTTSCEEEEEEHHH
T ss_pred HHHHHHHHHhCcCHHHHhhccCCCeeEEEEEecC
Confidence 9999999999999888888899999999998643
No 18
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.40A {Thermus thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A 2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A 2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A 2enw_A ...
Probab=99.96 E-value=3.4e-30 Score=254.72 Aligned_cols=164 Identities=27% Similarity=0.364 Sum_probs=148.1
Q ss_pred ccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcCCCceeeccc
Q 004453 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRAL 637 (753)
Q Consensus 560 r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~g~~v~~~~~L 637 (753)
|+||||||||+.+|..++++| |.|||+.|++||+.++++|. ..+ |||||+.||+|||++ ++.++...+.|
T Consensus 1 m~l~lvRHG~t~~n~~~~~~g~~d~pLt~~G~~qA~~l~~~l~----~~~---i~sSpl~Ra~qTA~~-l~~~~~~~~~L 72 (177)
T 1v37_A 1 MELWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALP----SLP---AFSSDLLRARRTAEL-AGFSPRLYPEL 72 (177)
T ss_dssp CEEEEEECCCCHHHHHTBCCSSCCCCCCHHHHHHHHHHTTTSC----SCC---EEECSSHHHHHHHHH-TTCCCEECGGG
T ss_pred CEEEEEeCCCCcccccCcccCCCCCCcCHHHHHHHHHHHHHhc----CCC---EEECCcHHHHHHHHH-hCCCcEECccc
Confidence 479999999999998888877 99999999999999997664 223 999999999999999 48888999999
Q ss_pred cccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecHHHHHHHHHHHh
Q 004453 638 DEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFA 717 (753)
Q Consensus 638 ~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e~~~VLIVSHg~vIr~Lla~ll 717 (753)
+|+++|.|+|++.+++++.+|+.+..| ..+.+|+|||+.++.+|+..++.++ . ++|||||||++|++++++++
T Consensus 73 ~E~~~G~~eg~~~~e~~~~~~~~~~~~----~~~~~p~gEs~~~~~~R~~~~l~~l-~--~~vlvVsHg~~i~~l~~~l~ 145 (177)
T 1v37_A 73 REIHFGALEGALWETLDPRYKEALLRF----QGFHPPGGESLSAFQERVFRFLEGL-K--APAVLFTHGGVVRAVLRALG 145 (177)
T ss_dssp SCCCCGGGTTCBGGGSCHHHHHHHHTT----CSCCCTTSCCHHHHHHHHHHHHHHC-C--SCEEEEECHHHHHHHHHHTT
T ss_pred eeCCCCcccCCCHHHHHHHCHHHHHHh----hcCCCCCCCCHHHHHHHHHHHHHHc-C--CCEEEEcCHHHHHHHHHHHc
Confidence 999999999999999999999988777 4678899999999999999999999 5 78999999999999999998
Q ss_pred CCCCCCCCccccCCcEEEEEEECCCceE
Q 004453 718 DRPLKEIPHIETPLHTIIEIQMGVTGVQ 745 (753)
Q Consensus 718 g~~~~~~~~l~~p~~sI~~L~~~~~g~~ 745 (753)
+ .+.++++++++|+.+..+|.
T Consensus 146 ~-------~~~~~~~~i~~~~~~~~~~~ 166 (177)
T 1v37_A 146 E-------DGLVPPGSAVAVDWPRRVLV 166 (177)
T ss_dssp S-------CCCCCTTCEEEEETTTEEEE
T ss_pred C-------CCCCCCCEEEEEEEeCCeeE
Confidence 8 35789999999998876665
No 19
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=99.96 E-value=6.9e-30 Score=262.60 Aligned_cols=182 Identities=17% Similarity=0.190 Sum_probs=155.4
Q ss_pred CCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc------CC
Q 004453 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GF 629 (753)
Q Consensus 558 ~~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~------g~ 629 (753)
++++||||||||+.+|..++++| |+|||+.|++||+.++++|. ..+++.|||||+.||+|||+++. +.
T Consensus 12 ~~~~l~lvRHGet~~n~~~~~~G~~D~pLt~~G~~qA~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~ 87 (237)
T 3r7a_A 12 NVVTLYVTRHGKTILNTNHRAQGWADSPLVEKGVEVATNLGTGLK----DIHFMNAYSSDSGRAIETANLVLKYSEQSKL 87 (237)
T ss_dssp CEEEEEEEECCCBHHHHTTBCCSSCCCCBCHHHHHHHHHHHHHTT----TSCEEEEEECSCHHHHHHHHHHHHHTTCTTS
T ss_pred CceEEEEEeCCcccccccccccCCCCCCcCHHHHHHHHHHHHHhc----CCCCCEEEECCcHHHHHHHHHHHHhcccCCC
Confidence 45899999999999999999888 99999999999999998775 56899999999999999999992 47
Q ss_pred CceeeccccccccCcCCCCCHHHHHHhChHH----------------HHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHH
Q 004453 630 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE----------------YEARKKDKLRYRYPRGESYLDVIQRLEPVIIEL 693 (753)
Q Consensus 630 ~v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~----------------~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL 693 (753)
++..++.|+|+++|.|+|++.+++.+.+|.. +..|..+. ..+|+|||+.++.+|+..++.++
T Consensus 88 ~~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gEs~~~~~~R~~~~l~~l 165 (237)
T 3r7a_A 88 KLEQRKKLRELNFGIFEGEKLDNMWDAVGKAAGVTSPEELLKFSIQEVIDLIRAA--DPTKQAEDWELFSTRIKAEIDKI 165 (237)
T ss_dssp CEEECGGGCCCCCGGGTTSBHHHHHHHHHHHHTCSSGGGGGGSCHHHHHHHHHHH--CTTCCSCCHHHHHHHHHHHHHHH
T ss_pred CeeeCCCCcccCcchhcCCCHHHHHHHhhhhcCCCCHHHHHHhhhhhhhHHHhhc--CCCCCCCCHHHHHHHHHHHHHHH
Confidence 8899999999999999999999998775432 22333221 25689999999999999999999
Q ss_pred Hc-----CCCcEEEEecHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCCceEEEEE
Q 004453 694 ER-----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRY 749 (753)
Q Consensus 694 ~~-----e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~g~~~~r~ 749 (753)
.. .+++|||||||++|+++++++++. ...+.+++|++++|+....+|....+
T Consensus 166 ~~~~~~~~~~~vlvVsHg~~i~~l~~~l~~~----~~~~~~~n~sv~~l~~~~~~~~l~~~ 222 (237)
T 3r7a_A 166 SEEAAKDGGGNVLVVVHGLLITTLIEMLDSS----KTKLGVENASVTKIVYQDGIYTVESV 222 (237)
T ss_dssp HHHHHHTTCEEEEEEECHHHHHHHHHHHHGG----GCCSCCCTTCEEEEEEETTEEEECCS
T ss_pred HHHhhcCCCCeEEEEcCHHHHHHHHHHhccc----cccCCCCCceEEEEEEECCEEEEEEe
Confidence 64 367899999999999999999842 36678999999999998887766544
No 20
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio} PDB: 3e9d_A 3e9e_A
Probab=99.96 E-value=2.9e-29 Score=263.05 Aligned_cols=176 Identities=24% Similarity=0.296 Sum_probs=116.7
Q ss_pred CCccEEEecccccccccCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc-------
Q 004453 558 TPRPILLTRHGESRDNVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------- 627 (753)
Q Consensus 558 ~~r~IyLVRHGEs~~N~~~~~~G---D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~------- 627 (753)
..++||||||||+.+|..++++| |+|||+.|++||+.++++|. ...++.|||||+.||+|||+++.
T Consensus 2 ~~~~l~LvRHGet~~n~~~~~~G~~~D~pLt~~G~~QA~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~ 77 (265)
T 3e9c_A 2 LTFALTIVRHGETQYNRDKLLQGQGIDTPLSDTGHQQAAAAGRYLK----DLHFTNVFVSNLQRAIQTAEIILGNNLHSS 77 (265)
T ss_dssp EEEEEEEEECCCC-------------CCCCCHHHHHHHHHHHHHTT----TCCCSEEEECSSHHHHHHHHHHHHTCSSCT
T ss_pred cccEEEEEeCCCccccccCcccCCCCCCCcCHHHHHHHHHHHHHHh----cCCCCEEEECCcHHHHHHHHHHHHhccccC
Confidence 45789999999999999888877 99999999999999998775 56899999999999999999992
Q ss_pred CCCceeeccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC-----------
Q 004453 628 GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ----------- 696 (753)
Q Consensus 628 g~~v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e----------- 696 (753)
+.++.+++.|+|+++|.|+|++.+++.+.++. |..++..+++|+|||+.++.+|+..++.+|.+.
T Consensus 78 ~~~v~~~~~L~E~~~G~~eg~~~~ei~~~~~~----~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~e~~~~~~~ 153 (265)
T 3e9c_A 78 ATEMILDPLLRERGFGVAEGRPKEHLKNMANA----AGQSCRDYTPPGGETLEQVKTRFKMFLKSLFQRMFEEHGSALSS 153 (265)
T ss_dssp TCCEEECGGGSCCCCC---------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHCSSSCC
T ss_pred CCCeEECccceeCcCCCCCCCCHHHHHHHHHH----hccCCccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 56899999999999999999999999887653 455667889999999999999999999998543
Q ss_pred ---------------------CCcEEEEecHHHHHHHHHHHhCC-----CCC--CCCcccc-CCcEEEEEEECC
Q 004453 697 ---------------------RAPVVVISHQAVLRALYAYFADR-----PLK--EIPHIET-PLHTIIEIQMGV 741 (753)
Q Consensus 697 ---------------------~~~VLIVSHg~vIr~Lla~llg~-----~~~--~~~~l~~-p~~sI~~L~~~~ 741 (753)
+++|||||||++|+++++++++. +.. ....+.+ ++++|+.+....
T Consensus 154 ~~~~~~~p~~~~~~e~~~~~~~~~vlvVsHg~~i~~ll~~ll~~~~~~~p~~~~~~~~~~v~~n~sit~~~~~~ 227 (265)
T 3e9c_A 154 VPSEADQPVIAGLADDGAQNVPVHALMVSHGAFIRISVRHLVEDLQCCLPAGLKMNQVFSPCPNTGISRFIFTI 227 (265)
T ss_dssp ----CCCCCCCSSTTTTCTTCCCEEEEEECHHHHHHHHHHHHHTSCEEECTTCCHHHHTSCCCTTCEEEEEEEE
T ss_pred cccccccccccccccccccCCCCeEEEEeCHHHHHHHHHHHHcccccccccchhHHhcccCCCCCeeEEEEEEE
Confidence 46899999999999999999852 222 1113344 889888887654
No 21
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote structure initiative; 1.75A {Saccharomyces cerevisiae} PDB: 3lg2_A 3oi7_A* 3ll4_A*
Probab=99.96 E-value=4.2e-29 Score=261.70 Aligned_cols=193 Identities=19% Similarity=0.167 Sum_probs=155.9
Q ss_pred CCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHh---cCCCCCEEEEcCcHHHHHHHHHhc----
Q 004453 557 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRL---KSERAASIWTSTLQRTILTASPIA---- 627 (753)
Q Consensus 557 ~~~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l---~~~~~~~V~tSpl~RaiqTA~~i~---- 627 (753)
+.+++||||||||+.+|..++++| |.|||+.|++||+.++++|.... ....++.|||||+.||+|||+++.
T Consensus 3 ~~~~~l~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~~~~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~ 82 (265)
T 3f3k_A 3 SLTPRCIIVRHGQTEWSKSGQYTGLTDLPLTPYGEGQMLRTGESVFRNNQFLNPDNITYIFTSPRLRARQTVDLVLKPLS 82 (265)
T ss_dssp CCCCEEEEEECCCCHHHHHTCCCSSCCCCCCHHHHHHHHHHHHHHHTC-CCSCGGGEEEEEECSSHHHHHHHHHHTTTSC
T ss_pred CCCcEEEEEECCCCccccccCccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCCCCEEEECCHHHHHHHHHHHHHhcc
Confidence 456899999999999999888888 99999999999999999997521 114788999999999999999993
Q ss_pred -----CCCceeeccccccccCcCCCCCHHHHHHhChHHHHHH--hcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC----
Q 004453 628 -----GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEAR--KKDKLRYRYPRGESYLDVIQRLEPVIIELERQ---- 696 (753)
Q Consensus 628 -----g~~v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~--~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e---- 696 (753)
+.++.+++.|+|+++|.|+|++.+++++.+|+..... ..+.+...+|+|||+.++.+|+..++.++.+.
T Consensus 83 ~~~~~~~~~~~~~~L~E~~~G~~eg~~~~ei~~~~~~~~~~~~~~~~~w~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~ 162 (265)
T 3f3k_A 83 DEQRAKIRVVVDDDLREWEYGDYEGMLTREIIELRKSRGLDKERPWNIWRDGCENGETTQQIGLRLSRAIARIQNLHRKH 162 (265)
T ss_dssp HHHHHTSEEEECGGGSCCCCGGGTTCCHHHHHHHHHHTTCCSSSCCCHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEcCCceeeccCccCCCcHHHHHHHhhhccccccchhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 2678999999999999999999999999887531100 01112234789999999999999999999642
Q ss_pred -----CCcEEEEecHHHHHHHHHHHhCCCC--------------------------------CCCCccccCCcEEEEEEE
Q 004453 697 -----RAPVVVISHQAVLRALYAYFADRPL--------------------------------KEIPHIETPLHTIIEIQM 739 (753)
Q Consensus 697 -----~~~VLIVSHg~vIr~Lla~llg~~~--------------------------------~~~~~l~~p~~sI~~L~~ 739 (753)
+++|||||||++|++|++++++.+. .....+.++.+++..+.+
T Consensus 163 ~~~~~~~~vliVsHg~~ir~l~~~l~g~~~~~~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~~~~~~~~l~~g~~~vl~~ 242 (265)
T 3f3k_A 163 QSEGRASDIMVFAHGHALRYFAAIWFGLGVQKKCETIEEIQNVKSYDDDTVPYVKLESYRHLVDNPCFLLDAGGIGVLSY 242 (265)
T ss_dssp HHTTCCCEEEEEECHHHHHHHHHHHTTCSEEEECCSHHHHCCCCCCCCTTSCCCCCSEEEECSSCCCEECCTTCEEEEEE
T ss_pred hccCCCCcEEEEeChHHHHHHHHHHhCCCHHHhhhhhcCcccccccccccccccccccccccCCCcceeecCCceeeecc
Confidence 4789999999999999999999664 333556678888888887
Q ss_pred CCCceEEEEE
Q 004453 740 GVTGVQEKRY 749 (753)
Q Consensus 740 ~~~g~~~~r~ 749 (753)
....+.+..+
T Consensus 243 ~~~~~~~~~~ 252 (265)
T 3f3k_A 243 AHHNIDEPAL 252 (265)
T ss_dssp STTCTTSEEE
T ss_pred cCCCcCchHH
Confidence 6655544443
No 22
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced glycolysis and apoptosis regulator, CAsp target, structural genomics medical relevance; HET: MSE; 1.75A {Homo sapiens}
Probab=99.96 E-value=5.7e-29 Score=262.21 Aligned_cols=179 Identities=25% Similarity=0.269 Sum_probs=153.4
Q ss_pred ccCCCCccEEEecccccccccCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc---
Q 004453 554 NTHLTPRPILLTRHGESRDNVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA--- 627 (753)
Q Consensus 554 n~~~~~r~IyLVRHGEs~~N~~~~~~G---D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~--- 627 (753)
++++..++||||||||+.+|..++++| |+|||+.|++||+.++++|. ...++.|||||+.||+|||+++.
T Consensus 3 ~~~~~~~~i~LvRHGet~~n~~~~~~G~~~D~~Lt~~G~~QA~~l~~~l~----~~~~~~v~sSpl~Ra~qTA~~i~~~~ 78 (275)
T 3dcy_A 3 YFQSARFALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIFLN----NVKFTHAFSSDLMRTKQTMHGILERS 78 (275)
T ss_dssp EECCEEEEEEEEECCCBHHHHHTBCCSSSSCCCBCHHHHHHHHHHHHHTT----TCCCSEEEECSSHHHHHHHHHHHTTC
T ss_pred cccccCcEEEEEeCCCcccccCCccCCCCCCCCcCHHHHHHHHHHHHHhc----cCCCCEEEECChHHHHHHHHHHHHhc
Confidence 445677999999999999998888876 99999999999999998775 56899999999999999999992
Q ss_pred ----CCCceeeccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC-------
Q 004453 628 ----GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ------- 696 (753)
Q Consensus 628 ----g~~v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e------- 696 (753)
+.++.+++.|+|+++|.|+|++.+++.+.+| .|..++..+++|+|||+.++.+|+..++.+|.+.
T Consensus 79 ~~~~~~~v~~~~~L~E~~~G~~eg~~~~ei~~~~~----~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~~~ 154 (275)
T 3dcy_A 79 KFCKDMTVKYDSRLRERKYGVVEGKALSELRAMAK----AAREECPVFTPPGGETLDQVKMRGIDFFEFLCQLILKEADQ 154 (275)
T ss_dssp SSCTTCCEEECGGGSCCCBGGGTTSBHHHHHHHHH----HTTCCTTTCCCTTBCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCeeECcccccCccCCcCCCCHHHHHHHHH----HHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5689999999999999999999999988765 4666778899999999999999999999998541
Q ss_pred ----------------------------------------CCcEEEEecHHHHHHHHHHHh---------CCCCCCCCcc
Q 004453 697 ----------------------------------------RAPVVVISHQAVLRALYAYFA---------DRPLKEIPHI 727 (753)
Q Consensus 697 ----------------------------------------~~~VLIVSHg~vIr~Lla~ll---------g~~~~~~~~l 727 (753)
+.+|||||||++|++|+.+|+ +++.+.+..+
T Consensus 155 ~~~~~~~~p~~~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~VlvVsHg~~ir~l~~~l~~~~~~~lp~~l~~~~i~~~ 234 (275)
T 3dcy_A 155 KEQFSQGSPSNCLETSLAEIFPLGKNHSSKVNSDSGIPGLAASVLVVSHGAYMRSLFDYFLTDLKCSLPATLSRSELMSV 234 (275)
T ss_dssp C---------CHHHHHHHTTSCC-------------CCCCSCEEEEEECHHHHHHHHHHHHHTTCCBCCTTCCHHHHHSC
T ss_pred ccccccccchHHHHHHHHhhccccccccchhcccccccCCCceEEEEechHHHHHHHHHHHhhcCCCCCCCCCHHHhcCc
Confidence 458999999999999999999 6666666566
Q ss_pred ccCCcEE-EEEEEC
Q 004453 728 ETPLHTI-IEIQMG 740 (753)
Q Consensus 728 ~~p~~sI-~~L~~~ 740 (753)
.++.+-. +.++.+
T Consensus 235 ~~~tgi~~~~~~~~ 248 (275)
T 3dcy_A 235 TPNTGMSLFIINFE 248 (275)
T ss_dssp CCTTCEEEEEEEEC
T ss_pred CCCCCCeeEEEEEc
Confidence 6666544 555553
No 23
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=99.95 E-value=3.4e-28 Score=255.29 Aligned_cols=187 Identities=20% Similarity=0.227 Sum_probs=155.8
Q ss_pred CCCCccEEEeccccccccc------------CCC------------------cCC---CCCCCHHHHHHHHHHHHHHHHH
Q 004453 556 HLTPRPILLTRHGESRDNV------------RGR------------------IGG---DTILSDAGEIYAKKLANFVEKR 602 (753)
Q Consensus 556 ~~~~r~IyLVRHGEs~~N~------------~~~------------------~~G---D~pLTe~G~~QA~~La~~L~~~ 602 (753)
.+.+++||||||||+.+|. .++ ++| |.|||+.|++||+.++++|...
T Consensus 6 ~~~~~~l~lvRHGet~~n~~~~~w~~~~~n~~~~y~~~d~n~p~~~~~r~~~~~G~~~D~pLt~~G~~QA~~l~~~L~~~ 85 (273)
T 3d4i_A 6 TISRRGILVIRHGERVDQVFGKSWLQQCTTADGKYYRPDLNFPRSLPRRSNGIKDFENDPPLSSCGIFQARLAGEALLDS 85 (273)
T ss_dssp TSCCCEEEEEECCCBHHHHHCTTHHHHTBCTTSCBCCSSTTSCSCCCCCTTGGGGGGGSCCBCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCccccccccchhHHHhhhccccccccccccCCcccccccCCCcCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence 4566899999999999852 222 333 8999999999999999999765
Q ss_pred hcCCCCCEEEEcCcHHHHHHHHHh---cC----CCceeeccccc-cccCcCCC----CCHHHHHHhChH---HHHHHhcC
Q 004453 603 LKSERAASIWTSTLQRTILTASPI---AG----FPKIQWRALDE-INAGVCDG----MTYEEIKKNMPE---EYEARKKD 667 (753)
Q Consensus 603 l~~~~~~~V~tSpl~RaiqTA~~i---~g----~~v~~~~~L~E-i~~G~~eg----lt~~ei~~~~P~---~~~~~~~d 667 (753)
+..++.|||||+.||+|||+++ ++ .++...+.|+| +++|.|+| ++.+++.+.+|. .+..|..+
T Consensus 86 --~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E~~~~g~~eg~~~~~~~~el~~~~~~~~~~~~~~~~~ 163 (273)
T 3d4i_A 86 --GVRVTAVFASPALRCVQTAKHILEELKLEKKLKIRVEPGIFEWMKWEASKATLTFLTLEELKEANFNVDLDYRPALPR 163 (273)
T ss_dssp --TCCEEEEEECSSHHHHHHHHHHHHHHTCTTTSCEEECGGGSCCGGGSCTTGGGGSCCHHHHHHTTCCBCTTCCCSSCG
T ss_pred --CCCCCEEEECchHHHHHHHHHHHHHcCcCCCccEEEChhhhhhhhccccccCCCCCCHHHHHHhCCCCCcccccccCC
Confidence 5689999999999999999998 34 67889999999 99999998 689999887763 33333322
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHcC----CCcEEEEecHHHHHHHHHHHhCCCCCCCCcc-----ccCCcEEEEEE
Q 004453 668 KLRYRYPRGESYLDVIQRLEPVIIELERQ----RAPVVVISHQAVLRALYAYFADRPLKEIPHI-----ETPLHTIIEIQ 738 (753)
Q Consensus 668 ~~~~r~P~GES~~dv~~Rl~~~I~eL~~e----~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l-----~~p~~sI~~L~ 738 (753)
..+|+|||+.++.+|+..++.++..+ +++|||||||++|+++++++++.+...+..+ .+++|++++|+
T Consensus 164 ---~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~~~n~si~~l~ 240 (273)
T 3d4i_A 164 ---CSLMPAESYDQYVERCAVSMGQIINTCPQDMGITLIVSHSSALDSCTRPLLGLPPRECGDFAQLVRKIPSLGMCFCE 240 (273)
T ss_dssp ---GGCCTTCCHHHHHHHHHHHHHHHHTTSTTCCSEEEEEECTTHHHHTTHHHHTCCCCCHHHHHHHHHTCCTTCEEEEE
T ss_pred ---CcCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEechHHHHHHHHHHcCCCcchHHHHhhhccccCcceEEEEE
Confidence 35789999999999999999998653 4789999999999999999999988877666 79999999999
Q ss_pred ECC--CceEEE
Q 004453 739 MGV--TGVQEK 747 (753)
Q Consensus 739 ~~~--~g~~~~ 747 (753)
.+. .+|...
T Consensus 241 ~~~~~~~w~l~ 251 (273)
T 3d4i_A 241 ENREDGKWDLV 251 (273)
T ss_dssp ECTTTCCEEEE
T ss_pred EcCCCCceeEC
Confidence 876 456654
No 24
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM, hydrolase; 1.76A {Bombyx mori}
Probab=99.95 E-value=1.4e-27 Score=249.39 Aligned_cols=181 Identities=19% Similarity=0.109 Sum_probs=147.1
Q ss_pred CCCccEEEecccccccc----------------------------cCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhcC
Q 004453 557 LTPRPILLTRHGESRDN----------------------------VRGRIGG---DTILSDAGEIYAKKLANFVEKRLKS 605 (753)
Q Consensus 557 ~~~r~IyLVRHGEs~~N----------------------------~~~~~~G---D~pLTe~G~~QA~~La~~L~~~l~~ 605 (753)
.++++||||||||+.+| ..++++| |.|||+.|++||+.++++|.+. +
T Consensus 2 ~~~~~l~lvRHGet~~n~~~~w~~~~~~~~~y~~~d~n~p~~~pn~~~~~~g~~~D~pLt~~G~~QA~~l~~~L~~~--~ 79 (263)
T 3c7t_A 2 KSRRWVFALRHGERVDLTYGPWVPHCFENDTYVRKDLNLPLKLAHRAGGKGGYVKDTPLTRLGWFQAQLVGEGMRMA--G 79 (263)
T ss_dssp --CEEEEEEECCCBHHHHSSSHHHHHEETTEECCCSTTSCSCCCCCTTHHHHHHHSCCBCHHHHHHHHHHHHHHHHT--T
T ss_pred CCceEEEEEeCCccccccchhhHhhhhccCccccccccCCccccccccCcccCCCCCCcCHHHHHHHHHHHHHHHHC--C
Confidence 35789999999999983 3444443 9999999999999999999754 5
Q ss_pred CCCCEEEEcCcHHHHHHHHHh---cC----CCceeeccccc-cccCcC---CCCCHHHHHHhChHHHHHHhcCcCCCCCC
Q 004453 606 ERAASIWTSTLQRTILTASPI---AG----FPKIQWRALDE-INAGVC---DGMTYEEIKKNMPEEYEARKKDKLRYRYP 674 (753)
Q Consensus 606 ~~~~~V~tSpl~RaiqTA~~i---~g----~~v~~~~~L~E-i~~G~~---eglt~~ei~~~~P~~~~~~~~d~~~~r~P 674 (753)
.+++.|||||+.||+|||+++ ++ .++..++.|+| +++|.| +|++.+++.+.+|.. ..+...... ..|
T Consensus 80 ~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E~~~~g~~~G~eg~~~~e~~~~~~~~-~~~~~~~~~-~~p 157 (263)
T 3c7t_A 80 VSIKHVYASPALRCVETAQGFLDGLRADPSVKIKVEPGLFEFKNWHMPKGIDFMTPIELCKAGLNV-DMTYKPYVE-MDA 157 (263)
T ss_dssp CCCCEEEECSSHHHHHHHHHHHHHHTCCTTCCEEECGGGCCCCCTTSCCCCCCCCHHHHHHTTCCB-CTTCCCSCC-CCS
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCcCCCCceEeccccccccccccccccccCCHHHHHHhcCCc-ccccccccc-CCC
Confidence 689999999999999999998 34 77889999999 987544 889999998877641 111112112 238
Q ss_pred CCCCHHHHHHHHHHHHHHHHc----CCCcEEEEecHHHHHHHHHHHhCCCCCCCC-------cc--ccCCcEEEEEEECC
Q 004453 675 RGESYLDVIQRLEPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIP-------HI--ETPLHTIIEIQMGV 741 (753)
Q Consensus 675 ~GES~~dv~~Rl~~~I~eL~~----e~~~VLIVSHg~vIr~Lla~llg~~~~~~~-------~l--~~p~~sI~~L~~~~ 741 (753)
+|||+.++.+|+..++.++.+ .+++|||||||++|+++++++++.+..... .+ .+++|++++|+.+.
T Consensus 158 ~gEs~~~~~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~n~si~~l~~~~ 237 (263)
T 3c7t_A 158 SAETMDEFFKRGEVAMQAAVNDTEKDGGNVIFIGHAITLDQMVGALHRLRDDMEDVQPYEIGRNLLKVPYCALGAMRGKP 237 (263)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTTTTTCCEEEEECHHHHHHHHHHHHTTCSSCCSCCCCCTTSSSSCCCTTCEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCHHHHHHHHHHHhCCCchhhcccHHHHHHhcccCCcceehhecccC
Confidence 999999999999999999864 357899999999999999999999887654 44 79999999999875
No 25
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=99.94 E-value=5.3e-27 Score=245.25 Aligned_cols=183 Identities=17% Similarity=0.116 Sum_probs=153.1
Q ss_pred ccEEEecccccccccCC------------Cc---------------------CCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 004453 560 RPILLTRHGESRDNVRG------------RI---------------------GGDTILSDAGEIYAKKLANFVEKRLKSE 606 (753)
Q Consensus 560 r~IyLVRHGEs~~N~~~------------~~---------------------~GD~pLTe~G~~QA~~La~~L~~~l~~~ 606 (753)
|+|||+||||+.+|..+ .+ ..|+|||+.|++||+.++++|.+. ..
T Consensus 1 r~i~l~RHge~~~~~~~~~w~~~~~~~~~~y~~~d~~~p~~~~~r~~~~~~~d~D~pLT~~G~~QA~~l~~~L~~~--~~ 78 (264)
T 3mbk_A 1 RCLFVCRHGERMDVVFGKYWLSQCFDAKGRYIRTNLNMPHSLPQRSGGFRDYEKDAPITVFGCMQARLVGEALLES--NT 78 (264)
T ss_dssp CEEEEEECCCBHHHHHCTTGGGGTBCTTSCBCCCSTTSCSCCCCCTTCGGGGTTSCCBCHHHHHHHHHHHHHHHHT--TC
T ss_pred CeEEEEeCCcccccccchhHHHhhcCCCCceecCCCCCCCcccCCCCchhhcCCCCCCChHHHHHHHHHHHHHHHc--CC
Confidence 58999999998653311 11 139999999999999999999865 57
Q ss_pred CCCEEEEcCcHHHHHHHHHh---cC----CCceeeccccccccCcCCC-------CCHHHHHHhChHHHHHHhcCcCCCC
Q 004453 607 RAASIWTSTLQRTILTASPI---AG----FPKIQWRALDEINAGVCDG-------MTYEEIKKNMPEEYEARKKDKLRYR 672 (753)
Q Consensus 607 ~~~~V~tSpl~RaiqTA~~i---~g----~~v~~~~~L~Ei~~G~~eg-------lt~~ei~~~~P~~~~~~~~d~~~~r 672 (753)
.++.|||||+.||+|||+++ ++ .++..++.|+| +|.|+| ++.+++.+.+|.....|..+...++
T Consensus 79 ~~d~v~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E--~g~~eg~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 156 (264)
T 3mbk_A 79 VIDHVYCSPSLRCVQTAHNILKGLQQDNHLKIRVEPGLFE--WTKWVAGSTLPAWIPPSELAAANLSVDTTYRPHIPVSK 156 (264)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTCTTTCCBEECGGGSC--CGGGSSSSSCCCCCCHHHHHHTTCCBCTTCCCSSCGGG
T ss_pred CcCEEEECcHHHHHHHHHHHHHHhcccCCCCeeEcCChHH--HhhhccccCCCCCCCHHHHHHhCCCcchhhccccCccc
Confidence 89999999999999999998 33 37899999999 688998 5899999988877777777777788
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc----CCCcEEEEecHHHHHHHHHHHhCCCCCCCCccc-----cCCcEEEEEEE--CC
Q 004453 673 YPRGESYLDVIQRLEPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIE-----TPLHTIIEIQM--GV 741 (753)
Q Consensus 673 ~P~GES~~dv~~Rl~~~I~eL~~----e~~~VLIVSHg~vIr~Lla~llg~~~~~~~~l~-----~p~~sI~~L~~--~~ 741 (753)
+|+|||+.++.+|+..++.++.+ .+++|||||||++|+++++++++.+.+.+..+. +|++++..++. ..
T Consensus 157 ~p~gEs~~~~~~R~~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l~~~l~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 236 (264)
T 3mbk_A 157 LAISESYDTYINRSFQVTKEIISECKSKGNNILIVAHASSLEACTCQLQGLSPQNSKDFVQMVRKIPYLGFCSCEELGET 236 (264)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHTTSCSEEEEEECTTHHHHTTTGGGTCCCCCHHHHHHHHTTCCTTCEEEEEECSSS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHHcCCCHHHHHHHHHhccCCCchHHHHhhhhccC
Confidence 89999999999999999999965 357899999999999999999999998876654 78888887775 34
Q ss_pred CceEE
Q 004453 742 TGVQE 746 (753)
Q Consensus 742 ~g~~~ 746 (753)
.+|+.
T Consensus 237 g~W~l 241 (264)
T 3mbk_A 237 GIWQL 241 (264)
T ss_dssp CCEEE
T ss_pred CcEEe
Confidence 45554
No 26
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate mutase family member 5, BXLBV68, MGC protein, structural genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo sapiens} PDB: 3o0t_A
Probab=99.93 E-value=4.7e-25 Score=221.58 Aligned_cols=171 Identities=20% Similarity=0.210 Sum_probs=136.8
Q ss_pred CCCCccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---c-CCCc
Q 004453 556 HLTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A-GFPK 631 (753)
Q Consensus 556 ~~~~r~IyLVRHGEs~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~-g~~v 631 (753)
.+.+++||||||||+ |..+++..|.|||+.|++||+.+++.|... +.+++.|||||+.||+|||+++ + +.++
T Consensus 7 ~~~~~~i~lvRHGe~--n~~g~~~~D~pLt~~G~~qA~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~ 82 (202)
T 3mxo_A 7 AKATRHIFLIRHSQY--HVDGSLEKDRTLTPLGREQAELTGLRLASL--GLKFNKIVHSSMTRAIETTDIISRHLPGVCK 82 (202)
T ss_dssp CSSCEEEEEEECCCB--CTTCSSGGGCCBCHHHHHHHHHHHHHHHTT--CCCCSEEEEESSHHHHHHHHHHHHTSTTCCE
T ss_pred CCCceEEEEEeCccc--cCCCCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhCCCCCe
Confidence 345689999999995 666777669999999999999999998753 4689999999999999999999 3 5688
Q ss_pred eeeccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC-------CCcEEEEe
Q 004453 632 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ-------RAPVVVIS 704 (753)
Q Consensus 632 ~~~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e-------~~~VLIVS 704 (753)
..++.|+| |+++++. +| +..| .+++|++.++.+|+..++.++.+. +++|||||
T Consensus 83 ~~~~~L~E-------g~~~~~~---~~--~~~w--------~~~~es~~~~~~R~~~~~~~~~~~~~~~~~~~~~vlvVs 142 (202)
T 3mxo_A 83 VSTDLLRE-------GAPIEPD---PP--VSHW--------KPEAVQYYEDGARIEAAFRNYIHRADARQEEDSYEIFIC 142 (202)
T ss_dssp EEEGGGCC-------CCC---------------------------CTHHHHHHHHHHHHHHHTTCCCTTCCSCEEEEEEE
T ss_pred eeCccccc-------CCccCCC---Cc--HHhh--------ccCCcccccHHHHHHHHHHHHHHhhhhccCCCceEEEEe
Confidence 89999998 4444321 11 2222 367899999999999999999653 45799999
Q ss_pred cHHHHHHHHHHHhCCCCCCCCccccCCcEEEEEEECC-CceEEEEEE
Q 004453 705 HQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGV-TGVQEKRYK 750 (753)
Q Consensus 705 Hg~vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~-~g~~~~r~~ 750 (753)
||++|++++++++|.+...++.+.++++++++|+... ..+....++
T Consensus 143 Hg~~ir~ll~~llg~~~~~~~~~~~~n~si~~l~~~~~g~~~l~~~N 189 (202)
T 3mxo_A 143 HANVIRYIVCRALQFPPEGWLRLSLNNGSITHLVIRPNGRVALRTLG 189 (202)
T ss_dssp CHHHHHHHHHHHTTCCGGGGGGBCCCTTCEEEEEECTTSCEEEEEEE
T ss_pred CHHHHHHHHHHHhCCCHHHHhhcccCCceEEEEEEcCCCcEEEEEeC
Confidence 9999999999999999998899999999999999975 457777665
No 27
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural genomics, isomerase, structural GE consortium, SGC; 2.40A {Plasmodium falciparum}
Probab=99.92 E-value=9.8e-26 Score=229.17 Aligned_cols=173 Identities=18% Similarity=0.157 Sum_probs=117.3
Q ss_pred CCCccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---c-CCCce
Q 004453 557 LTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A-GFPKI 632 (753)
Q Consensus 557 ~~~r~IyLVRHGEs~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~-g~~v~ 632 (753)
..+++||||||||+.+|..+ -..|.|||+.|++||+.++++|...+...+++.|||||+.||+|||+++ + +.++.
T Consensus 19 ~~~~~i~LvRHGet~~n~~~-g~~d~pLt~~G~~QA~~l~~~L~~~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 97 (214)
T 3eoz_A 19 NTTKHIILVRHGQYERRYKD-DENSKRLTKEGCKQADITGKKLKDILNNKKVSVIYHSDMIRAKETANIISKYFPDANLI 97 (214)
T ss_dssp CCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSHHHHHHHHHHHTTCTTSEEE
T ss_pred CCccEEEEEeCCccccCccC-CcCCCCcCHHHHHHHHHHHHHHHHhcccCCCCEEEECCcHHHHHHHHHHHHHCCCCCee
Confidence 34589999999999999764 1129999999999999999999876655689999999999999999999 2 56788
Q ss_pred eeccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC-----CCcEEEEecHH
Q 004453 633 QWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ-----RAPVVVISHQA 707 (753)
Q Consensus 633 ~~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e-----~~~VLIVSHg~ 707 (753)
.++.|+| |+++.+. .+ + ....|+|||+.++.+|+..++.++... +++|||||||+
T Consensus 98 ~~~~L~E-------G~~~~~~--~~----------~-~~~~~~gEs~~~~~~R~~~~l~~l~~~~~~~~~~~vlvVsHg~ 157 (214)
T 3eoz_A 98 NDPNLNE-------GTPYLPD--PL----------P-RHSKFDAQKIKEDNKRINKAYETYFYKPSGDEDEYQLVICHGN 157 (214)
T ss_dssp ECGGGCC-------CC-----------------------------------CCHHHHHHHHCSCCCSSCCEEEEEEECHH
T ss_pred eCccccC-------CCCCCCC--CC----------c-ccCCCCCccHHHHHHHHHHHHHHHHHhcccCCCcEEEEEeCcH
Confidence 8899998 4444311 00 1 122378999999999999999999654 24799999999
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCcEEEEEEECCC-ceEEEEEE
Q 004453 708 VLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVT-GVQEKRYK 750 (753)
Q Consensus 708 vIr~Lla~llg~~~~~~~~l~~p~~sI~~L~~~~~-g~~~~r~~ 750 (753)
+|+++++++++.+.+.++.+.++++++++|+.... .+....++
T Consensus 158 ~i~~ll~~llg~~~~~~~~~~~~n~si~~l~~~~~g~~~l~~~N 201 (214)
T 3eoz_A 158 VIRYFLCRALQIPLFAWLRFSSYNCGITWLVLDDEGSVVLREFG 201 (214)
T ss_dssp HHHHHHHHHHTCCHHHHHHHTTCCCSEEEEEEETTSCEEEECCG
T ss_pred HHHHHHHHHhCCCHHHHhhcCCCCceEEEEEECCCCCEEEEEec
Confidence 99999999999998877788899999999999764 46655443
No 28
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=99.88 E-value=1e-21 Score=190.98 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=114.2
Q ss_pred ccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCceeecc
Q 004453 560 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWRA 636 (753)
Q Consensus 560 r~IyLVRHGEs~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g~~v~~~~~ 636 (753)
|+||||||||+++|..+. .|.|||+.|++||+.++++|... ...++.|||||+.||+|||+++ ++.++..
T Consensus 1 m~l~LvRHg~t~~n~~g~--~d~pLt~~G~~qA~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~--- 73 (161)
T 1ujc_A 1 MQVFIMRHGDAALDAASD--SVRPLTTNGCDESRLMANWLKGQ--KVEIERVLVSPFLRAEQTLEEVGDCLNLPSSA--- 73 (161)
T ss_dssp CEEEEEECCCBCSCSSSG--GGCCBCHHHHHHHHHHHHHHHHT--TCCCCEEEECSSHHHHHHHHHHHHHSCCCSCC---
T ss_pred CEEEEEeCCCcCCCCCCC--CcCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEeCchHHHHHHHHHHHHhcCCCceE---
Confidence 479999999999987432 29999999999999999999864 4689999999999999999998 3333221
Q ss_pred ccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHc-CCCcEEEEecHHHHHHHHHH
Q 004453 637 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER-QRAPVVVISHQAVLRALYAY 715 (753)
Q Consensus 637 L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~-e~~~VLIVSHg~vIr~Lla~ 715 (753)
..|++ -+|+|| + +|+..++.++.. .+++||||||+++|++++++
T Consensus 74 ------~~~~~------------------------l~p~ge-~----~r~~~~l~~~~~~~~~~vlvV~H~~~i~~l~~~ 118 (161)
T 1ujc_A 74 ------EVLPE------------------------LTPCGD-V----GLVSAYLQALTNEGVASVLVISHLPLVGYLVAE 118 (161)
T ss_dssp ------EECGG------------------------GSTTCC-H----HHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHH
T ss_pred ------EecCC------------------------cCCCCC-H----HHHHHHHHHHhccCCCeEEEEeCHHHHHHHHHH
Confidence 01111 147788 3 567777777654 56789999999999999999
Q ss_pred HhCCCCCCCCccccCCcEEEEEEEC-CCceEEEEEE
Q 004453 716 FADRPLKEIPHIETPLHTIIEIQMG-VTGVQEKRYK 750 (753)
Q Consensus 716 llg~~~~~~~~l~~p~~sI~~L~~~-~~g~~~~r~~ 750 (753)
+++.+.. +.++++++++|+.+ ..++....++
T Consensus 119 l~~~~~~----~~~~~~~i~~l~~~~~~~~~l~~~~ 150 (161)
T 1ujc_A 119 LCPGETP----PMFTTSAIASVTLDESGNGTFNWQM 150 (161)
T ss_dssp HSTTCCC----CCCCTTCEEEEEECTTSCEEEEEEE
T ss_pred HhCCCCc----cccCCCeEEEEEEcCCCCeEEEEee
Confidence 9998765 67899999999998 6677766654
No 29
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=5.3e-21 Score=188.01 Aligned_cols=137 Identities=20% Similarity=0.224 Sum_probs=101.7
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCC--c
Q 004453 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFP--K 631 (753)
Q Consensus 559 ~r~IyLVRHGEs~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g~~--v 631 (753)
|++||||||||+.+|..+ +| |.|||+.|++||+.++++|.+. ...++.|||||+.||+|||+++ ++.+ +
T Consensus 8 M~~l~LvRHg~t~~n~~~--~g~~d~pLt~~G~~qa~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 83 (173)
T 2rfl_A 8 PTRVYLLRHAKAAWAAPG--ERDFDRGLNEAGFAEAEIIADLAADR--RYRPDLILSSTAARCRQTTQAWQRAFNEGIDI 83 (173)
T ss_dssp CCEEEEEECCCBCC-------CGGGCCBCHHHHHHHHHHHHHHHHH--TCCCSEEEECSSHHHHHHHHHHHHHHC--CEE
T ss_pred ccEEEEEeCCCcCCCCCC--CCcccCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEECCHHHHHHHHHHHHHhcCCCCCe
Confidence 579999999999999755 34 8999999999999999999865 5688999999999999999998 3444 3
Q ss_pred eeeccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecHHHHHH
Q 004453 632 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRA 711 (753)
Q Consensus 632 ~~~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e~~~VLIVSHg~vIr~ 711 (753)
..++.|.|.+ .|++.+ ++ ++...+++||||||+++|++
T Consensus 84 ~~~~~l~e~~----------------------------------~e~~~~-------~l-~~~~~~~~vlvVsH~~~i~~ 121 (173)
T 2rfl_A 84 VYIDEMYNAR----------------------------------SETYLS-------LI-AAQTEVQSVMLVGHNPTMEA 121 (173)
T ss_dssp EECGGGSSCS----------------------------------SSCSHH-------HH-HTCTTCSEEEEEECTTHHHH
T ss_pred EECHhHhcCC----------------------------------HHHHHH-------HH-hCCCCCCeEEEEeCCHHHHH
Confidence 4455554432 145443 33 44345678999999999999
Q ss_pred HHHHHhCCCCCC-CCccccCCcEEEEEEECC
Q 004453 712 LYAYFADRPLKE-IPHIETPLHTIIEIQMGV 741 (753)
Q Consensus 712 Lla~llg~~~~~-~~~l~~p~~sI~~L~~~~ 741 (753)
+++++++.+... ...+.++++++++|+...
T Consensus 122 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (173)
T 2rfl_A 122 TLEAMIGEDLLHAALPSGFPTSGLAVLDQDD 152 (173)
T ss_dssp HHHHHHCHHHHHHHCTTCCCTTCEEEEEC--
T ss_pred HHHHHhCCCcchhhhhcCCCCCeEEEEEecC
Confidence 999999876431 134678999999998754
No 30
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.75 E-value=7.2e-18 Score=184.38 Aligned_cols=160 Identities=15% Similarity=0.113 Sum_probs=121.1
Q ss_pred ccCCCCccEEEecccccccccCCCcC-CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCC
Q 004453 554 NTHLTPRPILLTRHGESRDNVRGRIG-GDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGF 629 (753)
Q Consensus 554 n~~~~~r~IyLVRHGEs~~N~~~~~~-GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i---~g~ 629 (753)
+-...+++|||||||++.++.....+ .|.|||+.|++||+.++++|. ...++.|||||+.||+|||+++ ++.
T Consensus 177 ~g~~~~~~l~lvRHg~~~~~~~~~~~~~d~pLt~~G~~qa~~~~~~l~----~~~~d~i~sSp~~Ra~~Ta~~~~~~~~~ 252 (364)
T 3fjy_A 177 EGAATAQNLLIVRHAKAESRKSWKGTDANRPITPKGAAMAFALNRELA----CFNPTRLATSPWLRCQETLQVLSWQTER 252 (364)
T ss_dssp TTGGGCEEEEEEECCCBCCTTTCCSCSTTCCBCHHHHHHHHHHHHHHG----GGCEEEEEECSSHHHHHHHHHHHHHHTC
T ss_pred cCCCcceeEEEEeccccccccccCCCcCcCCCCHHHHHHHHHHHHHhc----cCCCCEEEEcChHHHHHHHHHHHHhcCC
Confidence 33456789999999999877542111 288999999999999999886 3478999999999999999998 577
Q ss_pred CceeeccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecHHHH
Q 004453 630 PKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVL 709 (753)
Q Consensus 630 ~v~~~~~L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e~~~VLIVSHg~vI 709 (753)
++...+.|+|..++ ++..++..|+..++.++...+++||||+||++|
T Consensus 253 ~~~~~~~l~e~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~vlvV~H~~~i 299 (364)
T 3fjy_A 253 PMEHINTLTEDAFA---------------------------------EHPAVSWLAFREQITQTLNSRETTAICMHRPVI 299 (364)
T ss_dssp CEEECGGGSHHHHH---------------------------------HCHHHHHHHHHHHHHHHHHHTCEEEEEECHHHH
T ss_pred CeEECcccCccccc---------------------------------cCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence 88888888876442 244567778888888877667899999999999
Q ss_pred HHHHHHHhCCCCCC-CC-cc-----ccCCcE--EEEEEECCCceEEEEEE
Q 004453 710 RALYAYFADRPLKE-IP-HI-----ETPLHT--IIEIQMGVTGVQEKRYK 750 (753)
Q Consensus 710 r~Lla~llg~~~~~-~~-~l-----~~p~~s--I~~L~~~~~g~~~~r~~ 750 (753)
++|+.++.+.+.+. +. .+ .+|+++ ++++..+..|+.+..++
T Consensus 300 ~~l~~~l~g~~~~~~~~~~~~~~~~~~pt~~~~v~~~~~~~~~~~v~~~~ 349 (364)
T 3fjy_A 300 GGMYDHLRGLCARKQLAKQLIAKSPYMPTGTAMSLFIIDTPQGPSIIDIQ 349 (364)
T ss_dssp HHHHHHHGGGSSSHHHHHHCCSSTTTSCTTCEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHhCCCchHHHHHhccccCcccCCCcEEEEEEcCCCCCCeEEEEE
Confidence 99999999977321 11 01 145554 55555567777776554
No 31
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=99.73 E-value=4e-18 Score=155.61 Aligned_cols=90 Identities=19% Similarity=0.381 Sum_probs=79.7
Q ss_pred CceEEEEEEEEecccCCCceEEEecCCCccCCCCccccccCcccCC----CceEEEEecCCCCCceeEEEEEecCCCCCc
Q 004453 28 GGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESA----SMWELSFVVPPNHETLDFKFLLKPKYGNGP 103 (753)
Q Consensus 28 ~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~----~~W~~~l~~~~~~~~leyKf~~~~~~~~~~ 103 (753)
+++.-|+|+|.+| +..++.++|+||+++||+|||++|++|+..++ +.|.+++++|... .|||||++++ .+..
T Consensus 4 ~~~v~V~F~v~~~-t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~-~~eYKy~v~~--~~g~ 79 (108)
T 1ac0_A 4 PTAVAVTFDLTAT-TTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGE-SFEYKFIRIE--SDDS 79 (108)
T ss_dssp CCCCCEEEEEECC-CCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECCCSSS-CEECCCEECC--SSSC
T ss_pred CCeEEEEEEEeeE-CCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEeCCCC-eEEEEEEEEc--CCCC
Confidence 5678899999998 78899999999999999999999999999965 9999999998765 7999999975 3445
Q ss_pred eeeccCCCcccccCCCCC
Q 004453 104 CIVEEGPNRLLTGGALQG 121 (753)
Q Consensus 104 ~~wE~g~NR~l~~~~~~~ 121 (753)
+.||+|+||.+..|....
T Consensus 80 ~~WE~g~nR~~~~p~~~~ 97 (108)
T 1ac0_A 80 VEWESDPNREYTVPQACG 97 (108)
T ss_dssp CCCCCSSCCEECCCSSSS
T ss_pred EEeccCCCEEEECCCCCC
Confidence 679999999999887644
No 32
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=99.73 E-value=8.4e-18 Score=158.75 Aligned_cols=91 Identities=15% Similarity=0.233 Sum_probs=79.4
Q ss_pred CCCceEEEEEEEEecccCCCceEEEecCCCccCCCCccccccCccc----CCCceEEEEecCCCCCceeEEEEE---ecC
Q 004453 26 HAGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE----SASMWELSFVVPPNHETLDFKFLL---KPK 98 (753)
Q Consensus 26 ~~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~----~~~~W~~~l~~~~~~~~leyKf~~---~~~ 98 (753)
+.+.+.-|+|+|++|. ..++.++|+||+++||+|||++|++|... .++.|.+++++|... +|||||++ ++.
T Consensus 4 ~s~~~v~V~F~v~~~~-~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~-~~eYKyvi~~~~~~ 81 (131)
T 2z0b_A 4 GSSGPSQVAFEIRGTL-LPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGV-SVQYRYFKGYFLEP 81 (131)
T ss_dssp --CCCEEEEEEEECCC-CTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTC-CEEEEEEEEEEECC
T ss_pred CCCCeEEEEEEEeeec-CCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCC-cEEEEEEEEeecCc
Confidence 3557889999999988 88999999999999999999999999999 899999999998774 89999999 764
Q ss_pred CCC------CceeeccCC-CcccccCC
Q 004453 99 YGN------GPCIVEEGP-NRLLTGGA 118 (753)
Q Consensus 99 ~~~------~~~~wE~g~-NR~l~~~~ 118 (753)
++. ....||+|+ ||+++.+.
T Consensus 82 ~~~~g~~~v~~~~WE~g~~NR~l~~~~ 108 (131)
T 2z0b_A 82 KTIGGPCQVIVHKWETHLQPRSITPLE 108 (131)
T ss_dssp CC----CEEEEEEECCSSCCEEECCCS
T ss_pred cccCCccccceeeECCCCCCcEEecCC
Confidence 323 455999999 99999884
No 33
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=99.71 E-value=4e-17 Score=160.94 Aligned_cols=144 Identities=17% Similarity=0.133 Sum_probs=102.5
Q ss_pred ccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcCCCceeeccccc
Q 004453 560 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRALDE 639 (753)
Q Consensus 560 r~IyLVRHGEs~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~g~~v~~~~~L~E 639 (753)
|+|||||||++++|..+.-..|.|||++|++||+.++++|.+. ...++.|||||+.||+|||+++...... ..+.+
T Consensus 1 M~l~LvRHg~a~~~~~~~~d~d~pLt~~G~~qA~~~~~~L~~~--~~~~~~i~sSp~~Ra~qTa~~l~~~~~~--~~~~~ 76 (172)
T 3f2i_A 1 MELYLIRHGIAEAQKTGIKDEERELTQEGKQKTEKVAYRLVKL--GRQFDLIVTSPLIRARQTAEILLASGLS--CQLEE 76 (172)
T ss_dssp CEEEEEECCCBCCC---CCGGGCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHTTSC--SCEEE
T ss_pred CEEEEEcCCCcCccccCCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHhcCCC--CCeEE
Confidence 5899999999998865432338999999999999999999865 5689999999999999999998322100 00111
Q ss_pred cccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecHHHHHHHHHHHhCC
Q 004453 640 INAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFADR 719 (753)
Q Consensus 640 i~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e~~~VLIVSHg~vIr~Lla~llg~ 719 (753)
.+. ...++++.++.+++..+. .....++++||+|+.+|..|+.++.+.
T Consensus 77 ~~~------------------------------L~~~~~~~~~~~~l~~~~--~~~~~~~vllVgH~P~l~~l~~~L~~~ 124 (172)
T 3f2i_A 77 SNH------------------------------LAPNGNIFNWLDYWLKPK--NFPENAQIAIVGHEPCLSNWTEILLWG 124 (172)
T ss_dssp CGG------------------------------GSTTCCHHHHHHHTHHHH--CCCTTCEEEEEECTTHHHHHHHHHHHS
T ss_pred Ccc------------------------------cCCccCHHHHHHHHHHhc--cCCCCCEEEEEeCChHHHHHHHHHhcC
Confidence 100 001344555555444332 113467899999999999999999986
Q ss_pred CCCCCCccccCCcEEEEEEECC
Q 004453 720 PLKEIPHIETPLHTIIEIQMGV 741 (753)
Q Consensus 720 ~~~~~~~l~~p~~sI~~L~~~~ 741 (753)
+.. ..+.++.++++.|+++.
T Consensus 125 ~~~--~~~~~~t~~i~~l~~~~ 144 (172)
T 3f2i_A 125 EAK--DSLVLKKAGMIGLKLPE 144 (172)
T ss_dssp SCC--CCBCCCTTCEEEEECCS
T ss_pred Ccc--cccccCCceEEEEEeCC
Confidence 553 34689999999999854
No 34
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=99.60 E-value=1.5e-15 Score=179.04 Aligned_cols=96 Identities=27% Similarity=0.340 Sum_probs=86.4
Q ss_pred CCceEEEEEEEEecccCCCceEEEecCCCccCCCCccccc-cCcc---cCCCceEEEEecCCCCCceeEEEEEecCCCCC
Q 004453 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKAL-AMGR---ESASMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (753)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal-~M~~---~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~ 102 (753)
.+++.-|+|+|++|++..++.++|+||+|+||+|||+||+ +|+. .+++.|.+++++|... +|||||++++. .
T Consensus 580 ~~~~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~-~~eyK~~~~~~--~- 655 (683)
T 3bmv_A 580 TGNQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGT-TIQFKFIKKNG--N- 655 (683)
T ss_dssp SSSEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTC-EEEEEEEEESS--S-
T ss_pred CCCeEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccCCCCCCcEEEEEEeCCCC-cEEEEEEEEcC--C-
Confidence 4679999999999999999999999999999999999999 9999 8999999999998764 89999999974 3
Q ss_pred ceeeccCCCcccccCCCCCCceEE
Q 004453 103 PCIVEEGPNRLLTGGALQGDSRSA 126 (753)
Q Consensus 103 ~~~wE~g~NR~l~~~~~~~~~~~~ 126 (753)
.+.||+|+||++++|.....++.+
T Consensus 656 ~~~WE~g~Nr~~~~~~~~~~~~~~ 679 (683)
T 3bmv_A 656 TITWEGGSNHTYTVPSSSTGTVIV 679 (683)
T ss_dssp CCEECCSSCEEEECCSSSCEEEEE
T ss_pred ceEecCCCCeeEECCCCCceEEEe
Confidence 789999999999999876544433
No 35
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=99.59 E-value=1.8e-15 Score=178.31 Aligned_cols=97 Identities=27% Similarity=0.362 Sum_probs=87.0
Q ss_pred CCceEEEEEEEEecccCCCceEEEecCCCccCCCCccccc-cCcc---cCCCceEEEEecCCCCCceeEEEEEecCCCCC
Q 004453 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKAL-AMGR---ESASMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (753)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal-~M~~---~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~ 102 (753)
.+++.-|+|+|++|++..+++|+|+||+|+||+|||+||+ +|.. .+++.|.+++++|... +|||||++++ ...
T Consensus 576 ~~~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~-~~eyK~v~~~--~~~ 652 (680)
T 1cyg_A 576 TNDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGK-TIEFKFIKKD--SQG 652 (680)
T ss_dssp SSCEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSC-EEEEEEEEEC--TTS
T ss_pred CCCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCcEEEEEEeCCCC-cEEEEEEEEe--CCC
Confidence 3579999999999999999999999999999999999999 9999 9999999999998764 8999999997 456
Q ss_pred ceeeccCCCcccccCCCCCCceEE
Q 004453 103 PCIVEEGPNRLLTGGALQGDSRSA 126 (753)
Q Consensus 103 ~~~wE~g~NR~l~~~~~~~~~~~~ 126 (753)
.+.||+|+||++++|.....++..
T Consensus 653 ~~~WE~g~Nr~~~~~~~~~~~~~~ 676 (680)
T 1cyg_A 653 NVTWESGSNHVYTTPTNTTGKIIV 676 (680)
T ss_dssp CEEECCSSCEEEECCSSSCEEEEE
T ss_pred CeEeCCCCCeeEECCCCCcEEEEE
Confidence 789999999999999876544443
No 36
>4hbz_A Putative phosphohistidine phosphatase, SIXA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HP_PGM_LIKE; HET: PGE; 1.55A {Nakamurella multipartita}
Probab=99.59 E-value=6e-15 Score=147.17 Aligned_cols=137 Identities=16% Similarity=0.107 Sum_probs=97.1
Q ss_pred CCccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc-CCCceeecc
Q 004453 558 TPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA-GFPKIQWRA 636 (753)
Q Consensus 558 ~~r~IyLVRHGEs~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~tSpl~RaiqTA~~i~-g~~v~~~~~ 636 (753)
.+++|||||||+++++... .|.|||++|++||+.++++|.+. ...++.|||||+.||+|||+.+. ..++.....
T Consensus 18 ~~k~L~L~RHaka~~~~~D---~dRpLt~~G~~~a~~~~~~l~~~--~~~~d~i~~Spa~Ra~qTa~~~~~~~~~~~~~~ 92 (186)
T 4hbz_A 18 GARTLVLMRHAAAGSAVRD---HDRPLTPDGVRAATAAGQWLRGH--LPAVDVVVCSTAARTRQTLAATGISAQVRYRDE 92 (186)
T ss_dssp CCEEEEEEECCCBCCCSSG---GGCCBCHHHHHHHHHHHHHHHHH--SCCCCEEEEESSHHHHHHHHHHTCCSEEEEEGG
T ss_pred CCcEEEEEECCccCCCCCC---CCCCCCHHHHHHHHHhhhHhhhc--ccCCCccccCcchhHHHHHHhhccccccccccc
Confidence 4689999999999886431 28899999999999999999877 77899999999999999999872 222222222
Q ss_pred ccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecHHHHHHHHHHH
Q 004453 637 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYF 716 (753)
Q Consensus 637 L~Ei~~G~~eglt~~ei~~~~P~~~~~~~~d~~~~r~P~GES~~dv~~Rl~~~I~eL~~e~~~VLIVSHg~vIr~Lla~l 716 (753)
|-+. +..+ +..++.++....++++||+|...|..+..+|
T Consensus 93 ly~~-------------------------------------~~~~----~l~~i~~~~~~~~~vllvGHnP~l~~l~~~L 131 (186)
T 4hbz_A 93 LYGG-------------------------------------GVDE----ILAEVAAVPADASTVLVVGHAPTIPATGWEL 131 (186)
T ss_dssp GTTC-------------------------------------CHHH----HHHHHHTSCTTCSEEEEEECTTHHHHHHHHH
T ss_pred cccc-------------------------------------ChHH----HHHHHHhccCCCCeeeecccCCCHHHHHHHH
Confidence 2111 1111 2233444444567899999999999999988
Q ss_pred hCCCC--------CC--CCccccCCcEEEEEEEC
Q 004453 717 ADRPL--------KE--IPHIETPLHTIIEIQMG 740 (753)
Q Consensus 717 lg~~~--------~~--~~~l~~p~~sI~~L~~~ 740 (753)
.+... .. .....+|.+++.+|++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~fpTa~~avl~~~ 165 (186)
T 4hbz_A 132 VRQSLLNRDADPSSGAGDELRHFAAGTFAVLSTT 165 (186)
T ss_dssp HHHHHHHTTCCTTCCTTGGGGCCCTTCEEEEEES
T ss_pred hccccccccchhhhhhHhhhcCCCCeEEEEEECC
Confidence 75311 11 11235788999988875
No 37
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=99.59 E-value=2e-15 Score=178.14 Aligned_cols=96 Identities=27% Similarity=0.361 Sum_probs=86.4
Q ss_pred CCceEEEEEEEEecccCCCceEEEecCCCccCCCCccccc-cCcc---cCCCceEEEEecCCCCCceeEEEEEecCCCCC
Q 004453 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKAL-AMGR---ESASMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (753)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal-~M~~---~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~ 102 (753)
.+++.-|+|+|++|++..++.|+|+||+|+||+|||+||+ +|.. .+++.|.+++++|.. .+|||||++++.+
T Consensus 583 ~~~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~-~~~eyK~~~~~~~--- 658 (686)
T 1d3c_A 583 SGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPAG-KTIEFKFLKKQGS--- 658 (686)
T ss_dssp SSSEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSSSSCTTCEEEEEEEETT-CEEEEEEEEEETT---
T ss_pred CCCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCeEEEEEEeCCC-CcEEEEEEEEcCC---
Confidence 3579999999999999999999999999999999999999 9999 999999999999876 4899999999743
Q ss_pred ceeeccCCCcccccCCCCCCceEE
Q 004453 103 PCIVEEGPNRLLTGGALQGDSRSA 126 (753)
Q Consensus 103 ~~~wE~g~NR~l~~~~~~~~~~~~ 126 (753)
.+.||+|+||++++|.....++..
T Consensus 659 ~~~WE~g~Nr~~~~~~~~~~~~~~ 682 (686)
T 1d3c_A 659 TVTWEGGSNHTFTAPSSGTATINV 682 (686)
T ss_dssp EEEECCSSCEEEECCSSSCEEEEE
T ss_pred ceEecCCCCeEEECCCCCcEEEEE
Confidence 899999999999999876544443
No 38
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A
Probab=99.50 E-value=3.8e-14 Score=161.66 Aligned_cols=96 Identities=17% Similarity=0.241 Sum_probs=85.1
Q ss_pred CCceEEEEEEEEecccCCCceEEEecCCCccCCCCcccc-ccCcccCCC-ceEEEEecCCCCCceeEEEEEecCCCCCce
Q 004453 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKA-LAMGRESAS-MWELSFVVPPNHETLDFKFLLKPKYGNGPC 104 (753)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~ka-l~M~~~~~~-~W~~~l~~~~~~~~leyKf~~~~~~~~~~~ 104 (753)
.+.+.-|+|+|++|+...+|.|+|+||+|.||+||++|| ++|+..+++ .|.++|++|... +|||||++++ ++..+
T Consensus 416 t~~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~~~p~~W~~~v~lp~~~-~~eYKyv~~~--~~g~v 492 (516)
T 1vem_A 416 GVTPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAER-NIEFKAFIKS--KDGTV 492 (516)
T ss_dssp SCCEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEETTTTEEEEEEEEETTC-CEEEEEEEEC--TTSCE
T ss_pred ccCccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccCCCCCEEEEEEEECCCC-cEEEEEEEEe--CCCCe
Confidence 467899999999999999999999999999999999999 799998888 999999998865 7999999986 44556
Q ss_pred -eeccCCCcccccCCCCCCceEE
Q 004453 105 -IVEEGPNRLLTGGALQGDSRSA 126 (753)
Q Consensus 105 -~wE~g~NR~l~~~~~~~~~~~~ 126 (753)
.||+|+||++++|... +++++
T Consensus 493 ~~WE~g~NR~~~~p~~~-~~~~~ 514 (516)
T 1vem_A 493 KSWQTIQQSWNPVPLKT-TSHTS 514 (516)
T ss_dssp EEECSSCEEESSCCSSC-CEEEE
T ss_pred eEEeCCCCEEEecCCCC-CeEEe
Confidence 9999999999999866 55443
No 39
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=99.44 E-value=2.8e-13 Score=157.17 Aligned_cols=89 Identities=18% Similarity=0.300 Sum_probs=80.1
Q ss_pred CCceEEEEEEEEecccCCCceEEEecCCCccCCCCccccccCcccCC----CceEEEEecCCCCCceeEEEEEecCCCCC
Q 004453 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESA----SMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (753)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~----~~W~~~l~~~~~~~~leyKf~~~~~~~~~ 102 (753)
.+++.-|+|+|+++ +..+|.|+|+||+++||+||++||++|+..++ +.|.++|++|... .|||||++++ .+.
T Consensus 493 ~~~~v~v~F~v~~~-t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~~t~~~~~W~~~v~lp~~~-~~eYKyvv~~--~~g 568 (599)
T 2vn4_A 493 TPTSVAVTFHELVS-TQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEAGD-VVEYKYINVG--QDG 568 (599)
T ss_dssp CCSEEEEEEEEECC-CCTTCEEEEEESSGGGTTTCTTTSEECBCTTCBTTBCEEEEEEEEETTC-EEEEEEEEEC--TTC
T ss_pred CCCeEEEEEEEeEE-cCCCCEEEEEecccCCCCcChhheeecccccCCCCCCcEEEEEEcCCCC-cEEEEEEEEC--CCC
Confidence 45678999999997 88899999999999999999999999999997 9999999997765 7999999986 345
Q ss_pred ceeeccCCCcccccCCC
Q 004453 103 PCIVEEGPNRLLTGGAL 119 (753)
Q Consensus 103 ~~~wE~g~NR~l~~~~~ 119 (753)
.+.||.|+||+++.|..
T Consensus 569 ~~~WE~g~NR~~~~p~~ 585 (599)
T 2vn4_A 569 SVTWESDPNHTYTVPAV 585 (599)
T ss_dssp CEEECCSSCEEEECCCC
T ss_pred ceEeCCCCCEEEecCcc
Confidence 67799999999998875
No 40
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=99.40 E-value=2.3e-14 Score=164.04 Aligned_cols=91 Identities=21% Similarity=0.298 Sum_probs=0.0
Q ss_pred CCceEEEEEEEEecccCCCceEEEecCCCccCCCCccccccCc-ccCCCceEEEEecCCCCCceeEEEEEecCCCC-Cce
Q 004453 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMG-RESASMWELSFVVPPNHETLDFKFLLKPKYGN-GPC 104 (753)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~-~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~-~~~ 104 (753)
.+.+.-|+|+|.+++...++.++|+||+|+||+||++||++|+ ..+++.|.+++++|... +|||||++++.+.. ..+
T Consensus 427 ~~~~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~W~~~v~lp~~~-~~eyKy~~~~~~~~~~~~ 505 (527)
T 1gcy_A 427 PGALVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDTSGYPTWKGSIALPAGQ-NEEWKCLIRNEANATQVR 505 (527)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCEEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccCCCCCeEEEEEEeCCCC-cEEEEEEEEeCCCCccee
Confidence 3568999999999999999999999999999999999999999 57899999999998865 79999999864333 478
Q ss_pred eeccCCCcccccCC
Q 004453 105 IVEEGPNRLLTGGA 118 (753)
Q Consensus 105 ~wE~g~NR~l~~~~ 118 (753)
.||+|+||++++|.
T Consensus 506 ~We~g~nr~~~~~~ 519 (527)
T 1gcy_A 506 QWQGGANNSLTPSE 519 (527)
T ss_dssp --------------
T ss_pred EecCCCCeeEECCC
Confidence 99999999999885
No 41
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=99.38 E-value=6.8e-13 Score=156.54 Aligned_cols=90 Identities=24% Similarity=0.380 Sum_probs=81.6
Q ss_pred CCceEEEEEEEEecccC-CCceEEEecCCCccCCCCc------cccc-cCcccCCCceEEEEecCCCCCceeEEEEEecC
Q 004453 27 AGGQFYVSLKMVNIKLK-GDLIPHVYGSVPLVGSWDS------SKAL-AMGRESASMWELSFVVPPNHETLDFKFLLKPK 98 (753)
Q Consensus 27 ~~~~~~v~lkv~aP~l~-~~~~l~l~Gs~~~LG~W~~------~kal-~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~ 98 (753)
.+.+.-|+|+|++++.. .+|.|+|+||+++||+||+ ++|+ +|...+.+.|.+++++|... +|||||++++.
T Consensus 578 ~~~~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~~~~~~W~~~v~l~~~~-~~eyKy~~~~~ 656 (686)
T 1qho_A 578 SGTQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAGK-TIQFKFFIKRA 656 (686)
T ss_dssp SSSEEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETTC-EEEEEEEEECT
T ss_pred CCCeEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhcccccCCCCcEEEEEEeCCCC-eEEEEEEEEcC
Confidence 35788999999999998 9999999999999999999 9999 99999999999999998865 79999999863
Q ss_pred CCCCceeeccCCCcccccCCC
Q 004453 99 YGNGPCIVEEGPNRLLTGGAL 119 (753)
Q Consensus 99 ~~~~~~~wE~g~NR~l~~~~~ 119 (753)
+..+.||+|+||++++|..
T Consensus 657 --~~~~~We~~~nr~~~~~~~ 675 (686)
T 1qho_A 657 --DGTIQWENGSNHVATTPTG 675 (686)
T ss_dssp --TSCEEECCSSCEEEECCSS
T ss_pred --CCCEEeCCCCCeeEECCCC
Confidence 4467999999999998864
No 42
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.29 E-value=5.6e-12 Score=140.34 Aligned_cols=138 Identities=17% Similarity=0.188 Sum_probs=92.1
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~ 427 (753)
...|.+|+|+|+|||||||+|++|++.+++.. ++.|.++ .++...+.+..++.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~-----i~~D~~~-------------------~~~~~~~~~~~~l~--- 307 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVH-----VNRDTLG-------------------SWQRCVSSCQAALR--- 307 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEE-----CCGGGSC-------------------SHHHHHHHHHHHHH---
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEE-----EccchHH-------------------HHHHHHHHHHHHHh---
Confidence 45688999999999999999999998876543 4444441 12333344444444
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 004453 428 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (753)
Q Consensus 428 ~~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri 506 (753)
.|..||+|++|..+..|..+.++ .+.++.+.+|.+.|+. +++.+|+..|......... .++..++.+.
T Consensus 308 -----~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~-e~l~~R~~~R~~~~~~~~~--~~~~~~~~~~--- 376 (416)
T 3zvl_A 308 -----QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATI-EQARHNNRFREMTDPSHAP--VSDMVMFSYR--- 376 (416)
T ss_dssp -----TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCH-HHHHHHHHHHHHHCTTCCC--CCHHHHHHHH---
T ss_pred -----cCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCH-HHHHHHHHhhcccCCCcCC--CCHHHHHHHH---
Confidence 78999999999999999998887 5667777777777765 5555555555442222222 3455544443
Q ss_pred hcccccccCCCC--C-ceEEEeec
Q 004453 507 ANYEKVYEPVDE--G-SYIKMIDM 527 (753)
Q Consensus 507 ~~y~~~yEpl~e--~-~yik~i~~ 527 (753)
+.|||++. . .+|..+++
T Consensus 377 ----~~~e~P~~~E~fd~v~~v~~ 396 (416)
T 3zvl_A 377 ----KQFEPPTLAEGFLEILEIPF 396 (416)
T ss_dssp ----HHCCCCCGGGTCSEEEEECC
T ss_pred ----HhcCCCCcccCCcEEEEEec
Confidence 44666653 2 77777777
No 43
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.28 E-value=1.8e-11 Score=118.19 Aligned_cols=120 Identities=14% Similarity=0.051 Sum_probs=76.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHH-HHhhcCCceEEEeccchhhhhcCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTR-YLRWLGHDTKHFNVGKYRRLKHGVNQS--ADFFRADNPEGMEARNEVAALAMEDMI 427 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r-~L~~~gi~t~v~n~d~yRr~~~g~~~~--~~~~~~~~~~~~~~~~~vA~~~l~d~~ 427 (753)
|.+|+|+|+|||||||+|++|++ .++ ..+++.|.+|+...+.... ..| ....-......... .+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~-----~~~i~~d~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~ 69 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG-----FYNINRDDYRQSIMAHEERDEYKY----TKKKEGIVTGMQFD---TAK 69 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT-----EEEECHHHHHHHHTTSCCGGGCCC----CHHHHHHHHHHHHH---HHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC-----cEEecHHHHHHHhhCCCccchhhh----chhhhhHHHHHHHH---HHH
Confidence 57999999999999999999998 333 4567778888866542111 112 12111111111111 112
Q ss_pred HHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHhh
Q 004453 428 SWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 483 (753)
Q Consensus 428 ~~l~--~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r~ 483 (753)
..+. +.|..+|+|+++.....|+.+.++ ...++++++|.+.|+ .+++.+|+..|.
T Consensus 70 ~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~ 127 (181)
T 1ly1_A 70 SILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVKRNSKRG 127 (181)
T ss_dssp HHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCC-HHHHHHHHTTCG
T ss_pred HHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHhccc
Confidence 2332 468999999999999988888877 455666666666675 455555655543
No 44
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.22 E-value=1.1e-10 Score=121.41 Aligned_cols=116 Identities=17% Similarity=0.116 Sum_probs=80.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-NEVAALAMEDMIS 428 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~-~~vA~~~l~d~~~ 428 (753)
++.+|+|+|+|||||||+|+.|+++|...|....+++.|.+|..+.+ |....+..++.. ...+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~-------~~~~~e~~~~~~~~~~i~~------- 68 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV-------WKEKYEEFIKKSTYRLIDS------- 68 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS-------CCGGGHHHHHHHHHHHHHH-------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh-------hhHHHHHHHHHHHHHHHHH-------
Confidence 36799999999999999999999998888877766788888864432 233333322221 122222
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHh
Q 004453 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLK 482 (753)
Q Consensus 429 ~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r 482 (753)
.+ +. ..+|+|+++..+..|+.+.++ ...+...++|.+.|+.+. +.+|+..|
T Consensus 69 ~l-~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~-~~~R~~~R 120 (260)
T 3a4m_A 69 AL-KN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDV-LIRRNIER 120 (260)
T ss_dssp HH-TT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHH-HHHHHHHT
T ss_pred Hh-hC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHH-HHHHHHhC
Confidence 22 24 889999999999999988887 556666777777786544 45555544
No 45
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.21 E-value=3.6e-10 Score=110.54 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=74.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~ 429 (753)
.|.+|+++|+|||||||+|+.|+++|++. +++.|.+|+.+.+.. .. ......+.....+...+.+++..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~-----~i~~D~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~ 72 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLP-----LLSKDAFKEVMFDGL---GW---SDREWSRRVGATAIMMLYHTAAT 72 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHHH---CC---CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCe-----EecHHHHHHHHHHhc---Cc---cchHHHHHhhHHHHHHHHHHHHH
Confidence 57899999999999999999999998643 577788887554311 11 11222222222222222223333
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHhhh
Q 004453 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (753)
Q Consensus 430 l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r~~ 484 (753)
..+.|..||+|+++.....+..+.++ ...+...++|.+.|+ .+++.+|+..|..
T Consensus 73 ~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~-~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 73 ILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVAS-GDVLVERILSRIA 127 (193)
T ss_dssp HHHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECC-HHHHHHHHHHHHH
T ss_pred HHhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHHhcC
Confidence 33468889999999433344455555 334556667777785 5666667666643
No 46
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.13 E-value=3.1e-10 Score=119.53 Aligned_cols=121 Identities=14% Similarity=0.068 Sum_probs=78.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--ADFFRADNPEGMEARNEVAALAMEDMIS 428 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~--~~~~~~~~~~~~~~~~~vA~~~l~d~~~ 428 (753)
|.+|+|+|+|||||||+|++|++.+ ....+++.|.+|+...+.... ..|+ ...-....+.+ .+.+..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r~~~~~~~~g~~~~~~----~~~~~~~~~~~---~~~~~~ 70 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQSIMAHEERDEYKYT----KKKEGIVTGMQ---FDTAKS 70 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHHHHTTSCCCC---CC----HHHHHHHHHHH---HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHHHHhccCCcccccccc----hhhhhHHHHHH---HHHHHH
Confidence 5799999999999999999999863 124568888888866542111 1222 11111111111 111223
Q ss_pred HHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHhh
Q 004453 429 WMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 483 (753)
Q Consensus 429 ~l~--~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r~ 483 (753)
.+. +.|..+|+|+++..+..|+.+.++ .+.++.+.+|.+.|+ .+++.+|+..|.
T Consensus 71 ~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~e~~~~R~~~R~ 127 (301)
T 1ltq_A 71 ILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVKRNSKRG 127 (301)
T ss_dssp HTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCC-HHHHHHHHHHCG
T ss_pred HHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECC-HHHHHHHHHhcc
Confidence 332 468999999999999999988877 566777777777785 555666665553
No 47
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.12 E-value=4.3e-10 Score=110.20 Aligned_cols=119 Identities=19% Similarity=0.252 Sum_probs=80.3
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~ 428 (753)
..+.+|+++|+|||||||+++.|++.|...+.+..+++.|.+|..+. ....|....+...++....++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~-------- 79 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVS---EGAGFTREERLRHLKRIAWIAR-------- 79 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTT---TTCCCCHHHHHHHHHHHHHHHH--------
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHh---hccCCChhhHHHHHHHHHHHHH--------
Confidence 35789999999999999999999999998888888888888876332 2222322112222222222222
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHH
Q 004453 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNI 479 (753)
Q Consensus 429 ~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni 479 (753)
.+.+.|.+||+|.++.....|+.+.++ ...+...++|.+.|+. +++.+|+
T Consensus 80 ~~~~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~-e~~~~R~ 130 (186)
T 2yvu_A 80 LLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASL-EEVIRRD 130 (186)
T ss_dssp HHHTTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCH-HHHHHHC
T ss_pred HHHhCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCH-HHHHHhh
Confidence 233478999999999888888888876 4444555666667865 4444554
No 48
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.07 E-value=8.2e-10 Score=127.71 Aligned_cols=140 Identities=14% Similarity=0.134 Sum_probs=95.2
Q ss_pred cCCCcccchhhhhhcccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcC-CceEEEeccchhhhhcCCCCCCCCC
Q 004453 326 SMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFNVGKYRRLKHGVNQSADFF 404 (753)
Q Consensus 326 ~~p~~~~~~~~~~~~~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~g-i~t~v~n~d~yRr~~~g~~~~~~~~ 404 (753)
..|.+......+...+....+.++.+.+|+|+|+|||||||+|++|++.|++.| ..+..++.|.+|+.+ .....|.
T Consensus 371 ~~p~w~~~~eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l---~~~~~f~ 447 (573)
T 1m8p_A 371 HIPEWFSYPEVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHEL---SSELGFT 447 (573)
T ss_dssp CCCTTTSCHHHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHT---CTTCCCS
T ss_pred CCCcccccccccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHh---ccccCCC
Confidence 344444322344444444444567889999999999999999999999999888 888889999888743 3334444
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHH
Q 004453 405 RADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIER 477 (753)
Q Consensus 405 ~~~~~~~~~~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~r 477 (753)
..++.+.++...++++..++ .|.+||+|.+++.+..|+.++++ .+.+ .++.|.+.|+.+.+.+|
T Consensus 448 ~~er~~~i~ri~~v~~~~~~--------~g~~VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~~ev~~~R 512 (573)
T 1m8p_A 448 REDRHTNIQRIAFVATELTR--------AGAAVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQS 512 (573)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TTCEEEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHh--------CCCEEEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCCHHHHHHH
Confidence 33344444444455554444 89999999999989999998888 4334 34455556755444444
No 49
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.04 E-value=2.8e-09 Score=112.82 Aligned_cols=153 Identities=11% Similarity=0.089 Sum_probs=89.4
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQ-SADFFRADNPEGMEARNEVAALAMEDM 426 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~-~~~~~~~~~~~~~~~~~~vA~~~l~d~ 426 (753)
...|.+|+|+|.|||||||+|++|++.+. .....++.|.+|....+... ... +.+...+.. ..........+
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R~~~~~~~~~~~~-~~~~a~~~~---~~~~~~~~~~~ 102 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQQHPNFDELVKL-YEKDVVKHV---TPYSNRMTEAI 102 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHTTSTTHHHHHHH-HGGGCHHHH---HHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhHHhchhhHHHHHH-ccchhhhhh---hHHHHHHHHHH
Confidence 44689999999999999999999998863 13456777888763321000 000 111111111 11111112222
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHH---HHHHHHhhhcCCCCCCCCChHHHHHHH
Q 004453 427 ISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDII---ERNIRLKIQQSPDYAEEPDFEAGLQDF 502 (753)
Q Consensus 427 ~~~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i---~rni~~r~~~~pd~~~~~d~e~al~df 502 (753)
++.+.+.|..||+|+++.....+..+++. .+.|+.+.++.+.|+++.+. .+|+..|.......... .+++..+..
T Consensus 103 v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~-~~~e~~~~i 181 (287)
T 1gvn_B 103 ISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARA-TPKQAHDIV 181 (287)
T ss_dssp HHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCC-CCHHHHHHH
T ss_pred HHHHHhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCC-CCHHHHHHH
Confidence 22233368999999999988877666665 67788876677777644441 67776665433212223 345555566
Q ss_pred HHHHhc
Q 004453 503 KNRLAN 508 (753)
Q Consensus 503 ~~Ri~~ 508 (753)
.+|+..
T Consensus 182 ~~rl~~ 187 (287)
T 1gvn_B 182 VKNLPT 187 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 50
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.98 E-value=2.8e-09 Score=103.10 Aligned_cols=123 Identities=16% Similarity=0.091 Sum_probs=70.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCC----CCC---CCCCCHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS----ADF---FRADNPEGMEARNEVAALAM 423 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~----~~~---~~~~~~~~~~~~~~vA~~~l 423 (753)
+.+|+++|+|||||||+|++|++.|+. ....++.|.+|+.+.+.... ..| +.......++.........+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPE---PWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGV 79 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS---CEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC---CeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHH
Confidence 468999999999999999999999763 33345677777644332110 011 11111222222221111111
Q ss_pred HHHHHHHhcCCeEEEEeCCCC-CHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHh
Q 004453 424 EDMISWMHEGGQVGIFDATNS-SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (753)
Q Consensus 424 ~d~~~~l~~~G~vVIlDATn~-~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r 482 (753)
..+.+.|..||+|+++. ....|+.+++... +..+++|.+.|+ .+++.+|++.|
T Consensus 80 ----~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~~~-~e~l~~R~~~r 133 (178)
T 1qhx_A 80 ----VAMARAGARIIIDDVFLGGAAAQERWRSFVG-DLDVLWVGVRCD-GAVAEGRETAR 133 (178)
T ss_dssp ----HHHHHTTCEEEEEECCTTTHHHHHHHHHHHT-TCCEEEEEEECC-HHHHHHHHHHT
T ss_pred ----HHHHhcCCeEEEEeccccChHHHHHHHHHhc-CCcEEEEEEECC-HHHHHHHHHhh
Confidence 12334788999999986 3455666665532 234556666785 56666776655
No 51
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.98 E-value=2.3e-09 Score=124.66 Aligned_cols=120 Identities=22% Similarity=0.211 Sum_probs=85.8
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~ 428 (753)
.++.+|+|+|+|||||||+|++|+++|...|.....++.+.+|.. ......|....+++.++.+.++++.+++
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~---L~~~~~fs~~dree~~r~i~eva~~~l~---- 122 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG---LNKNLGFSPEDREENVRRIAEVAKLFAD---- 122 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTT---TTTTCCSSHHHHHHHHHHHHHHHHHHHH----
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhc---cCccccCChhhhHHHHHHHHHHHHHHHh----
Confidence 478999999999999999999999999777888877877777652 2233334334455556555555554444
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHH
Q 004453 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIR 480 (753)
Q Consensus 429 ~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~ 480 (753)
.|.+||.|.++..+..|+.++++ .+.+.+++.|.+.|+. +++.+|+.
T Consensus 123 ----~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~-Evl~~Rl~ 170 (630)
T 1x6v_B 123 ----AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPL-HVCEQRDV 170 (630)
T ss_dssp ----TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCH-HHHHHHCT
T ss_pred ----CCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCH-HHHHHHhc
Confidence 89999999888877788888887 5556666666667864 55555543
No 52
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.98 E-value=2.5e-09 Score=107.24 Aligned_cols=117 Identities=23% Similarity=0.196 Sum_probs=78.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh-hcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~-~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~ 428 (753)
.+.+|+++|+|||||||+|+.|++.|. ..|+....++.|.+|..+. ....|+...+...++....++..+++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~---~~~~~~~~~r~~~~~~~~~~~~~~l~---- 96 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLN---KDLGFSEADRNENIRRIAEVAKLFAD---- 96 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTT---TTCCSSHHHHHHHHHHHHHHHHHHHH----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhc---cccCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 467999999999999999999999998 7788888888888875332 22234333333344433333434333
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHc-------CCceEEEEEEEeCcHHHHHH
Q 004453 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAE-------GNCKIIFLETICNDRDIIER 477 (753)
Q Consensus 429 ~l~~~G~vVIlDATn~~~~~R~~l~~l~~-------~~~~vifIE~~c~d~~~i~r 477 (753)
.|.+||+|.++.....|+.+.++.. .+.+.++|.+.|+.+.+++|
T Consensus 97 ----~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R 148 (211)
T 1m7g_A 97 ----SNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQR 148 (211)
T ss_dssp ----TTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTS
T ss_pred ----CCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHh
Confidence 7899999977666677888888732 23445566667865544444
No 53
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.96 E-value=4.6e-09 Score=104.42 Aligned_cols=117 Identities=20% Similarity=0.180 Sum_probs=78.7
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~ 428 (753)
..+.+|+++|+|||||||+|+.|++.|...|.-+..++.+++|+.. .....|..+.....++....++..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~------- 92 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGL---NRDLSFKAEDRAENIRRVGEVAKL------- 92 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTT---TTTCCSSHHHHHHHHHHHHHHHHH-------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHh---hcccCcChHHHHHHHHHHHHHHHH-------
Confidence 3578999999999999999999999998666666678888886632 222233322222223333334333
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHH
Q 004453 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIER 477 (753)
Q Consensus 429 ~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~r 477 (753)
+.+.|..+|++..+..++.|+.++++.. +..+++|.+.|+.+.+.+|
T Consensus 93 -~~~~~~~vi~~~~~~~~~~r~~~~~~~~-~~~~~~v~L~a~~e~~~~R 139 (200)
T 3uie_A 93 -FADAGIICIASLISPYRTDRDACRSLLP-EGDFVEVFMDVPLSVCEAR 139 (200)
T ss_dssp -HHHTTCEEEEECCCCCHHHHHHHHHTSC-TTSEEEEEECCCHHHHHHH
T ss_pred -HHhCCceEEEecCCchHHHHHHHHHhcC-CCCEEEEEEeCCHHHHHHh
Confidence 3347899999999999999999988743 2345455556765444444
No 54
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.93 E-value=3.7e-09 Score=121.63 Aligned_cols=141 Identities=21% Similarity=0.212 Sum_probs=93.4
Q ss_pred ccCCCcccchhhhhhcccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCC
Q 004453 325 NSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFF 404 (753)
Q Consensus 325 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~ 404 (753)
...|++......+.+......+.++.+.+|+++|+|||||||+|+.|++.|+..|.+..+++.|.+|+.+.+ ...|.
T Consensus 346 ~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~---~~~f~ 422 (546)
T 2gks_A 346 RKLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSR---GLGFS 422 (546)
T ss_dssp CCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCT---TCCSS
T ss_pred CCCCccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcc---ccccc
Confidence 455666554455566555554556678899999999999999999999999998988899999988875432 22333
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHH
Q 004453 405 RADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNI 479 (753)
Q Consensus 405 ~~~~~~~~~~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni 479 (753)
..++...++.+.+++.. +.+.|..||+|++++.+..|+.++++ .+.+ +++|.+.|+. +++.+|+
T Consensus 423 ~~er~~~l~~i~~~~~~--------~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d--~~vV~L~~~~-e~~~~Rl 487 (546)
T 2gks_A 423 KEDRITNILRVGFVASE--------IVKHNGVVICALVSPYRSARNQVRNMMEEGK--FIEVFVDAPV-EVCEERD 487 (546)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHTTCEEEEECCCCCHHHHHHHHTTSCTTC--EEEEEEECCG-GGHHHHC
T ss_pred HHHHHHHHHHHHHHHHH--------HHhCCCEEEEEcCCCCHHHHHHHHHHhhcCC--EEEEEEeCCH-HHHHHHh
Confidence 22222222222223333 33478999999999999888888777 3333 3344445754 4445554
No 55
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.91 E-value=4.4e-09 Score=108.83 Aligned_cols=126 Identities=12% Similarity=0.115 Sum_probs=77.1
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcC---CCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG---VNQSADFFRADNPEGMEARNEVAALAME 424 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g---~~~~~~~~~~~~~~~~~~~~~vA~~~l~ 424 (753)
...|.+|+|+|+|||||||+|+.|++.++ ....+++.|.+|+.... .....+. ...+.... .+.....
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~r~~~~~~~~i~~~~g~---~~~~~~~~---~~~~~~~ 99 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSFRSQHPHYLELQQEYGK---DSVEYTKD---FAGKMVE 99 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGGGTTSTTHHHHHTTCSS---TTHHHHHH---HHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHHHHhchhHHHHHHHcCc---hHHHHhhH---HHHHHHH
Confidence 45688999999999999999999999875 24566788888763211 0111111 11111110 0111112
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHhh
Q 004453 425 DMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 483 (753)
Q Consensus 425 d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r~ 483 (753)
.+++.+.+.|..+|+|+++.....+..+.++ .+.++.+.++.+.| +.+++.+|+..|.
T Consensus 100 ~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~-~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 100 SLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIAT-KPELSYLSTLIRY 158 (253)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeC-CHHHHHHHHHHHH
Confidence 2233334467789999999877766666655 66787776655556 5566666666553
No 56
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.81 E-value=5e-09 Score=103.97 Aligned_cols=113 Identities=10% Similarity=0.146 Sum_probs=68.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhh--cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK--HGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~--~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~ 428 (753)
+.+|+|+|.|||||||+|+.|++.+++. +++.|+++... .+..... .+. .......... +..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~-----~i~~d~~~~~~~~~~~~~g~-~~~---~~~~~~~~~~-------l~~ 81 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYP-----FIEGDALHPPENIRKMSEGI-PLT---DDDRWPWLAA-------IGE 81 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCC-----EEEGGGGCCHHHHHHHHHTC-CCC---HHHHHHHHHH-------HHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCE-----EEeCCcCcchhhHHHHhcCC-CCC---chhhHHHHHH-------HHH
Confidence 5689999999999999999999998643 46666653210 0000011 111 1111111111 111
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhh
Q 004453 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (753)
Q Consensus 429 ~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~ 483 (753)
.+ ..|..+|+|+++..+..|+.+..+......++| +.|+ .+++.+|+..|.
T Consensus 82 ~~-~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~--l~~~-~e~~~~Rl~~R~ 132 (202)
T 3t61_A 82 RL-ASREPVVVSCSALKRSYRDKLRESAPGGLAFVF--LHGS-ESVLAERMHHRT 132 (202)
T ss_dssp HH-TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEE--EECC-HHHHHHHHHHHH
T ss_pred HH-hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEE--EeCC-HHHHHHHHHHhh
Confidence 22 368899999999999988888776533334444 4565 566677776664
No 57
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.80 E-value=2.4e-08 Score=97.16 Aligned_cols=150 Identities=15% Similarity=0.228 Sum_probs=76.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCC-C-----CCCC---CCCHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-A-----DFFR---ADNPEGMEARNEVAA 420 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~-~-----~~~~---~~~~~~~~~~~~vA~ 420 (753)
.|.+|+++|.|||||||+|+.|++.+++ .+++.|++-+........ . .+.. ....+ ....+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~-----~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~l~ 73 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGY-----THLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVE---ITISLLK 73 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCC-----EEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHH---HHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCC-----eEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHH---HHHHHHH
Confidence 4689999999999999999999998764 356666553322111000 0 0000 00111 1111111
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCc-eEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 004453 421 LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNC-KIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGL 499 (753)
Q Consensus 421 ~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~-~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al 499 (753)
..+...+..+ ..+..+|+|+.....+.++.+........ .-+.|.+.|+ ++++.+|+..|.... +..+. . .
T Consensus 74 ~~~~~~~~~~-~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~e~~~~R~~~R~~~~-~r~~~-~----~ 145 (196)
T 1tev_A 74 REMDQTMAAN-AQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCN-NEICIERCLERGKSS-GRSDD-N----R 145 (196)
T ss_dssp HHHHHHHHHC-TTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECC-HHHHHHHHHHHHHTS-SCCSC-C----H
T ss_pred HHHHhhhccc-cCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECC-HHHHHHHHHcccccC-CCCCC-C----H
Confidence 2222222112 24778999999998887776665522211 2234445675 455555555553211 11111 1 2
Q ss_pred HHHHHHHhcccccccC
Q 004453 500 QDFKNRLANYEKVYEP 515 (753)
Q Consensus 500 ~df~~Ri~~y~~~yEp 515 (753)
+.+.+|++.|.+..+|
T Consensus 146 ~~~~~~~~~~~~~~~~ 161 (196)
T 1tev_A 146 ESLEKRIQTYLQSTKP 161 (196)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHH
Confidence 3445566666555444
No 58
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.79 E-value=5e-08 Score=94.83 Aligned_cols=118 Identities=20% Similarity=0.199 Sum_probs=72.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~ 429 (753)
.+.+|+++|.+||||||+++.|++.|...|+....++.+.+|+.+. ....|.....+..++.....+. .
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--------~ 72 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLN---KNLGFSPEDREENVRRIAEVAK--------L 72 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTT---TTCCSSHHHHHHHHHHHHHHHH--------H
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHh---hccccccccHHHHHHHHHHHHH--------H
Confidence 4678999999999999999999999866677776677777765321 1122221222333333322221 1
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHH
Q 004453 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNI 479 (753)
Q Consensus 430 l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni 479 (753)
+.+.|.+++.+...+....|..+.++ ...++..+.|.+.|+. +++.+|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~-e~~~~R~ 122 (179)
T 2pez_A 73 FADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPL-HVCEQRD 122 (179)
T ss_dssp HHHTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCH-HHHHHHC
T ss_pred HHHCCCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCH-HHHHHHH
Confidence 22367888888777766666666665 4455555556667864 5455554
No 59
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.79 E-value=5.9e-08 Score=95.10 Aligned_cols=156 Identities=15% Similarity=0.222 Sum_probs=87.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhc-CCCCC---CCCCC---CCCHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKH-GVNQS---ADFFR---ADNPEGMEARNEVAAL 421 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~-g~~~~---~~~~~---~~~~~~~~~~~~vA~~ 421 (753)
.+.+|+++|.|||||||+|+.|+++|++ .+++.|++ |+... +.... ..++. ....+ ....
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~-----~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~ 78 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGF-----THLSTGELLREELASESERSKLIRDIMERGDLVPSG-------IVLE 78 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTC-----EEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHH-------HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC-----eEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHH-------HHHH
Confidence 3569999999999999999999999864 35666655 33221 00000 00000 00111 1111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH-cCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 004453 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMA-EGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (753)
Q Consensus 422 ~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~-~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~ 500 (753)
.+.+.+......|..+|+|+.....+.+..+.... ..+ .++|++ | +++++.+|+..|... .+ ..+...+
T Consensus 79 ~~~~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~-~~i~l~--~-~~~~~~~R~~~R~~~----~~--~~~~~~~ 148 (199)
T 2bwj_A 79 LLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQ-LVICMD--C-SADTMTNRLLQMSRS----SL--PVDDTTK 148 (199)
T ss_dssp HHHHHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCS-EEEEEE--C-CHHHHHHHHHHTCCC----CS--CHHHHHH
T ss_pred HHHHHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCC-EEEEEE--C-CHHHHHHHHHcCCCC----CC--CCCCCHH
Confidence 12222222223578999999988887777665542 222 355554 6 466677777665321 11 3455567
Q ss_pred HHHHHHhcccccccCCCC----CceEEEeec
Q 004453 501 DFKNRLANYEKVYEPVDE----GSYIKMIDM 527 (753)
Q Consensus 501 df~~Ri~~y~~~yEpl~e----~~yik~i~~ 527 (753)
.+.+|+..|....+|+.+ ..++.+||.
T Consensus 149 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~ 179 (199)
T 2bwj_A 149 TIAKRLEAYYRASIPVIAYYETKTQLHKINA 179 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 888888777666665322 144455664
No 60
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.78 E-value=1.6e-08 Score=98.07 Aligned_cols=117 Identities=21% Similarity=0.142 Sum_probs=63.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec----cchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV----GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~----d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d 425 (753)
++.+|+++|+|||||||+|+.|++.|+...+ .+. +.+|+.. . .....| ... +...+...+++..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i----~d~~~~g~~i~~~~-~-~g~~~~-~~~-~~~~~~~~~~i~~---- 71 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV----FEPEEMGQALRKLT-P-GFSGDP-QEH-PMWIPLMLDALQY---- 71 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE----CCTHHHHHHHHHTS-T-TCCSCG-GGS-TTHHHHHHHHHHH----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE----EchhhhHHHHHHhC-c-cccchh-hhh-HHHHHHHHHHHHH----
Confidence 4679999999999999999999998765321 132 1233322 1 111222 111 1111111222222
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHh
Q 004453 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLK 482 (753)
Q Consensus 426 ~~~~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r 482 (753)
.+...|.+||+|+++...+.+..+.+. .+.++.+.+|.+.|+ .+++.+|+..|
T Consensus 72 ---~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~-~e~~~~R~~~R 125 (183)
T 2vli_A 72 ---ASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAP-LNVVLERLRRD 125 (183)
T ss_dssp ---HHHHCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECC-HHHHHHHHHTC
T ss_pred ---HHHhCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCC-HHHHHHHHHhc
Confidence 223358889999999888777666555 445555545666675 56666666655
No 61
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.76 E-value=3.3e-08 Score=96.68 Aligned_cols=157 Identities=14% Similarity=0.204 Sum_probs=83.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCC-----CCCC---CCCHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA-----DFFR---ADNPEGMEARNEVAAL 421 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~-----~~~~---~~~~~~~~~~~~vA~~ 421 (753)
++.+|+++|.|||||||+|+.|++.|++. +++.|++-+......... .++. ....+ ....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~ 75 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYT-----HLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLE-------TVLD 75 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHH-------HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCe-----EEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHH-------HHHH
Confidence 45699999999999999999999988653 455555432211000000 0000 00011 1111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 004453 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 501 (753)
Q Consensus 422 ~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~d 501 (753)
.+.+.+......|..+|+|+.....+.++.+.......-.++|+ .|+ ++++.+|+..|....+ ..+...+.
T Consensus 76 ~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l--~~~-~e~~~~R~~~R~~~~~------~~~~~~~~ 146 (196)
T 2c95_A 76 MLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYV--DAG-PETMTQRLLKRGETSG------RVDDNEET 146 (196)
T ss_dssp HHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEE--ECC-HHHHHHHHHHHHTSSS------CGGGSHHH
T ss_pred HHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEE--ECC-HHHHHHHHHccCCcCC------CCCCCHHH
Confidence 12222222233678899999777766666665543222245555 464 5666667766643222 12333455
Q ss_pred HHHHHhcccccccCCC----CCceEEEeec
Q 004453 502 FKNRLANYEKVYEPVD----EGSYIKMIDM 527 (753)
Q Consensus 502 f~~Ri~~y~~~yEpl~----e~~yik~i~~ 527 (753)
+.+|+..|....+|+- +..++..||.
T Consensus 147 ~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~ 176 (196)
T 2c95_A 147 IKKRLETYYKATEPVIAFYEKRGIVRKVNA 176 (196)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEEC
Confidence 6677776655555431 1145555664
No 62
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.72 E-value=6e-08 Score=92.08 Aligned_cols=119 Identities=12% Similarity=0.093 Sum_probs=65.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHH-HHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEA-RNEVAALAMED-MISW 429 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~-~~~vA~~~l~d-~~~~ 429 (753)
++|+++|.|||||||+|+.| +.+++. +++.|++-+....... ............ +...-...+.+ +...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~-----~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAK-----VIVMSDVVRKRYSIEA---KPGERLMDFAKRLREIYGDGVVARLCVEE 72 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCE-----EEEHHHHHHHHHHHHC------CCHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCc-----EEEHhHHHHHHHHhcC---CChhHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 58999999999999999999 665433 4555544332211111 100111111111 11100111111 1222
Q ss_pred H-hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhh
Q 004453 430 M-HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (753)
Q Consensus 430 l-~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~ 483 (753)
+ ...+..+|+|+. .....++.+.+.......++|+ .| +.+++.+|+..|.
T Consensus 73 l~~~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l--~~-~~~~~~~R~~~R~ 123 (179)
T 3lw7_A 73 LGTSNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAV--HS-PPKIRYKRMIERL 123 (179)
T ss_dssp HCSCCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEE--EC-CHHHHHHHHHTCC
T ss_pred HHhcCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEE--EC-CHHHHHHHHHhcc
Confidence 3 146889999998 8888888888875444444554 46 4667777776653
No 63
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.71 E-value=6.1e-08 Score=93.59 Aligned_cols=112 Identities=20% Similarity=0.300 Sum_probs=66.2
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhh------hcCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL------KHGVNQSADFFRADNPEGMEARNEVAALAM 423 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~------~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l 423 (753)
.+.+|+++|.|||||||+++.|++.++ ..+++.|++++. ..|. .+........+..+..++..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g-----~~~i~~d~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~- 76 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLH-----AAFLDGDFLHPRRNIEKMASGE----PLNDDDRKPWLQALNDAAFAM- 76 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHT-----CEEEEGGGGCCHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHH-
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhC-----cEEEeCccccchHHHHHhhcCc----CCCccccccHHHHHHHHHHHH-
Confidence 356899999999999999999998874 345677766421 1221 111101111222222322222
Q ss_pred HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHh
Q 004453 424 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (753)
Q Consensus 424 ~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r 482 (753)
.+.|..+|+|+++..+..|+.+++ .+..+.+|.+.|+ .+++.+|+..|
T Consensus 77 -------~~~~~~~vi~~~~~~~~~~~~l~~---~~~~~~vv~l~~~-~e~~~~R~~~R 124 (175)
T 1knq_A 77 -------QRTNKVSLIVCSALKKHYRDLLRE---GNPNLSFIYLKGD-FDVIESRLKAR 124 (175)
T ss_dssp -------HHHCSEEEEECCCCSHHHHHHHHT---TCTTEEEEEEECC-HHHHHHHHHTS
T ss_pred -------HhcCCcEEEEeCchHHHHHHHHHh---cCCCEEEEEEECC-HHHHHHHHHhc
Confidence 225778999999888777666544 3333344555575 56667777655
No 64
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.69 E-value=1.1e-07 Score=92.45 Aligned_cols=145 Identities=14% Similarity=0.243 Sum_probs=76.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCCC----CCCCC---CCHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSA----DFFRA---DNPEGMEARNEVAAL 421 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~~----~~~~~---~~~~~~~~~~~vA~~ 421 (753)
.+.+|+++|.|||||||+|+.|++.|++ .+++.|++ |+......... .++.. ... .....
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~-----~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~-------~~~~~ 72 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGW-----VHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPS-------IVTVK 72 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCC-----EEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCH-------HHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCC-----eEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCH-------HHHHH
Confidence 4579999999999999999999998764 34666554 33221100000 00000 000 11111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCc-eEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 004453 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNC-KIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (753)
Q Consensus 422 ~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~-~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~ 500 (753)
.+.+.+ ....|..+|+|+.....+.+..+......+. .-+.|.+.|+ ++++.+|+..|..... - .+...+
T Consensus 73 ~l~~~i--~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~-r-----~~~~~~ 143 (194)
T 1qf9_A 73 LLKNAI--DANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCP-EEVMTQRLLKRGESSG-R-----SDDNIE 143 (194)
T ss_dssp HHHHHH--HTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECC-HHHHHHHHHHHHTTSC-C-----TTCSHH
T ss_pred HHHHHH--HhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECC-HHHHHHHHHhccccCC-C-----CCCCHH
Confidence 111111 0125788999998888887777766533211 1123444564 5666666666543111 1 122234
Q ss_pred HHHHHHhcccccccC
Q 004453 501 DFKNRLANYEKVYEP 515 (753)
Q Consensus 501 df~~Ri~~y~~~yEp 515 (753)
.+.+|+..|.+..+|
T Consensus 144 ~~~~ri~~~~~~~~~ 158 (194)
T 1qf9_A 144 SIKKRFNTFNVQTKL 158 (194)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHhHHH
Confidence 566676666544444
No 65
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.69 E-value=4e-08 Score=97.35 Aligned_cols=156 Identities=19% Similarity=0.248 Sum_probs=83.1
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCC----CCCCC---CCCHHHHHHHHHHH
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFR---ADNPEGMEARNEVA 419 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~----~~~~~---~~~~~~~~~~~~vA 419 (753)
+..|++|+|+|.|||||||+|+.|+++|++. +++.|++ |+...+.... ..++. .... ...
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~-----~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~-------~~~ 84 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIP-----QISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS-------DLT 84 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCH-------HHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCc-----EEehhHHHHHHHHcCChHHHHHHHHHHcCCcccH-------HHH
Confidence 4567899999999999999999999988643 4666655 3321110000 00000 0000 011
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCce-EEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHH
Q 004453 420 ALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEA 497 (753)
Q Consensus 420 ~~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~-vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~ 497 (753)
...+.+.+... ..|..+|+|+.......++.+..+ .+.+.. .++|.+.|+ .+++.+|+..|. .++ . +.
T Consensus 85 ~~~~~~~~~~~-~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~R~--r~~---~-~~-- 154 (201)
T 2cdn_A 85 NELVDDRLNNP-DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVS-EEVLLERLKGRG--RAD---D-TD-- 154 (201)
T ss_dssp HHHHHHHTTSG-GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHHHC--CTT---C-SH--
T ss_pred HHHHHHHHhcc-cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCC--CCC---C-CH--
Confidence 11111111111 235568999988777777777665 433322 244555675 566677776652 222 1 22
Q ss_pred HHHHHHHHHhcccccccCCCC--CceEEEeec
Q 004453 498 GLQDFKNRLANYEKVYEPVDE--GSYIKMIDM 527 (753)
Q Consensus 498 al~df~~Ri~~y~~~yEpl~e--~~yik~i~~ 527 (753)
+.+.+|++.|.+..+|+.+ ...+..||.
T Consensus 155 --e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~ 184 (201)
T 2cdn_A 155 --DVILNRMKVYRDETAPLLEYYRDQLKTVDA 184 (201)
T ss_dssp --HHHHHHHHHHHHHTTTHHHHTTTTEEEEEC
T ss_pred --HHHHHHHHHHHHhhHHHHHHhcCcEEEEeC
Confidence 3466777777655554322 123444554
No 66
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.69 E-value=5.2e-08 Score=96.76 Aligned_cols=111 Identities=15% Similarity=0.221 Sum_probs=68.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh------hhcCCCCCCCCCCC-CCHHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR------LKHGVNQSADFFRA-DNPEGMEARNEVAALA 422 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr------~~~g~~~~~~~~~~-~~~~~~~~~~~vA~~~ 422 (753)
.+.+|+++|.|||||||+++.|++.+++ ..++.+++++ ...+. .+.. .....+.....++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~-----~~i~~d~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~ 97 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGL-----EFAEADAFHSPENIATMQRGI-----PLTDEDRWPWLRSLAEWMDAR 97 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCC-----EEEEGGGGSCHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC-----eEEcccccccHHHHHHHhcCC-----CCCCcccccHHHHHHHHHHHH
Confidence 4568999999999999999999998743 4566666532 11121 1111 1111223333333332
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHh
Q 004453 423 MEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (753)
Q Consensus 423 l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r 482 (753)
+ ..|..+|+|++...+..|+.+.++.. .+. +|.+.|+ .+++.+|+..|
T Consensus 98 ~--------~~g~~viid~~~~~~~~~~~l~~~~~-~~~--vv~l~~~-~e~l~~Rl~~R 145 (200)
T 4eun_A 98 A--------DAGVSTIITCSALKRTYRDVLREGPP-SVD--FLHLDGP-AEVIKGRMSKR 145 (200)
T ss_dssp H--------HTTCCEEEEECCCCHHHHHHHTTSSS-CCE--EEEEECC-HHHHHHHHTTC
T ss_pred H--------hcCCCEEEEchhhhHHHHHHHHHhCC-ceE--EEEEeCC-HHHHHHHHHhc
Confidence 2 36788899999998888877765532 234 4445575 66677777555
No 67
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.68 E-value=1.7e-08 Score=100.16 Aligned_cols=129 Identities=18% Similarity=0.224 Sum_probs=69.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l 430 (753)
..+|+++|.|||||||+|+.|++.|++. .++.|++.+...|... ..+|....+..++... ..+++.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~-----~i~~d~~~~~~~g~~i-~~~~~~~~~~~~~~~e-------~~~l~~l 91 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVP-----FIDLDWYIEERFHKTV-GELFTERGEAGFRELE-------RNMLHEV 91 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSCH-HHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC-----EEcchHHHHHHhCCcH-HHHHHhcChHHHHHHH-------HHHHHHH
Confidence 4589999999999999999999998643 4666776554443221 1122222222222221 1222233
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 004453 431 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAG 498 (753)
Q Consensus 431 ~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~a 498 (753)
.. +..+|++........++.+..+.+. ..++|+. | +.+++.+|+.++...+|...+. +.++.
T Consensus 92 ~~-~~~~vi~~ggg~~~~~~~~~~l~~~-~~vi~L~--~-~~e~l~~Rl~~~~~~Rp~~~~~-~~~~~ 153 (199)
T 3vaa_A 92 AE-FENVVISTGGGAPCFYDNMEFMNRT-GKTVFLN--V-HPDVLFRRLRIAKQQRPILQGK-EDDEL 153 (199)
T ss_dssp TT-CSSEEEECCTTGGGSTTHHHHHHHH-SEEEEEE--C-CHHHHHHHHHHTGGGCGGGTTC-CHHHH
T ss_pred hh-cCCcEEECCCcEEccHHHHHHHHcC-CEEEEEE--C-CHHHHHHHHhcCCCCCCCcCCC-ChhhH
Confidence 33 3445566555444434333333222 2455654 5 5677778887322346666555 55443
No 68
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.64 E-value=2.3e-08 Score=97.30 Aligned_cols=138 Identities=18% Similarity=0.269 Sum_probs=72.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l 430 (753)
+..|+++|.|||||||+|+.|++.|++. +++.|++++...|.... .++....+..++... ..++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~-----~i~~d~~~~~~~g~~~~-~~~~~~g~~~~~~~~-------~~~~~~~ 71 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRI-----LYDSDKEIEKRTGADIA-WIFEMEGEAGFRRRE-------REMIEAL 71 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHTSCHH-HHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHcCCChh-hHHHHhCHHHHHHHH-------HHHHHHH
Confidence 4479999999999999999999998654 46777777765553211 222222222232221 1222223
Q ss_pred hcCCeEEEEeC--CCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHH--HHhhhcCCCCCCCCChHHH-HHHHHHH
Q 004453 431 HEGGQVGIFDA--TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNI--RLKIQQSPDYAEEPDFEAG-LQDFKNR 505 (753)
Q Consensus 431 ~~~G~vVIlDA--Tn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni--~~r~~~~pd~~~~~d~e~a-l~df~~R 505 (753)
......+|... +......|+.+... + .++|+ .| +.+.+.+|+ +.+ ...|...+. +.... .+.+.+|
T Consensus 72 ~~~~~~vi~~gg~~~~~~~~~~~l~~~---~-~vi~L--~~-~~e~l~~Rl~~~~~-~~rp~~~~~-~~~~~l~~~~~~r 142 (185)
T 3trf_A 72 CKLDNIILATGGGVVLDEKNRQQISET---G-VVIYL--TA-SIDTQLKRIGQKGE-MRRPLFIKN-NSKEKLQQLNEIR 142 (185)
T ss_dssp HHSSSCEEECCTTGGGSHHHHHHHHHH---E-EEEEE--EC-CHHHHHHHHHCCTT-CSSCCCCCH-HHHHHHHHHHHHH
T ss_pred HhcCCcEEecCCceecCHHHHHHHHhC---C-cEEEE--EC-CHHHHHHHHhhcCC-CCCCCCCCC-CHHHHHHHHHHHH
Confidence 33334344332 23345555555432 2 34454 46 467778887 333 235655543 22222 3334445
Q ss_pred Hhccc
Q 004453 506 LANYE 510 (753)
Q Consensus 506 i~~y~ 510 (753)
.+.|+
T Consensus 143 ~~~y~ 147 (185)
T 3trf_A 143 KPLYQ 147 (185)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 69
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.60 E-value=1.3e-06 Score=86.33 Aligned_cols=120 Identities=13% Similarity=0.166 Sum_probs=63.4
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCCC-----CCCC--C-C-CHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSA-----DFFR--A-D-NPEGMEARNEV 418 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~~-----~~~~--~-~-~~~~~~~~~~v 418 (753)
.++.+|+++|.|||||||+|+.|++.++. .+++.|++ |+......... .++. . . .+.....+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~-----~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~ 87 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSF-----VHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNA 87 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSC-----EEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc-----eEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence 35679999999999999999999988653 45666654 33211000000 0000 0 0 11111111111
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhh
Q 004453 419 AALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (753)
Q Consensus 419 A~~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~ 483 (753)
+...+..++..+|+|+.....+....+.......-.++|+ .|+ ++++.+|+..|.
T Consensus 88 -------i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l--~~~-~e~~~~Rl~~R~ 142 (203)
T 1ukz_A 88 -------ISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFF--DCP-EDIMLERLLERG 142 (203)
T ss_dssp -------HHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEE--ECC-HHHHHHHHHHHH
T ss_pred -------HHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEE--ECC-HHHHHHHHHhcc
Confidence 1122333336889998877666666555442222234454 565 555666665553
No 70
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.53 E-value=6.4e-07 Score=91.24 Aligned_cols=161 Identities=16% Similarity=0.225 Sum_probs=87.7
Q ss_pred cCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHH-------
Q 004453 344 LGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN------- 416 (753)
Q Consensus 344 ~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~------- 416 (753)
+..+-.++.+|++.|.|||||+|.|+.|+++++.. .++.|++-|.... ..++.+.....
T Consensus 22 ~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~-----hIstGdllR~~i~---------~~t~lg~~~~~~~~~G~l 87 (217)
T 3umf_A 22 TDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN-----HLSSGDLLRAEVQ---------SGSPKGKELKAMMERGEL 87 (217)
T ss_dssp --CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE-----EECHHHHHHHHHT---------TCCHHHHHHHHHHHHTCC
T ss_pred cchhccCCcEEEEECCCCCCHHHHHHHHHHHHCCc-----eEcHHHHHHHHHH---------cCCchHHHHHHHHhcCCC
Confidence 33444578899999999999999999999997654 4566655332211 11222211111
Q ss_pred ---HHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCC
Q 004453 417 ---EVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEP 493 (753)
Q Consensus 417 ---~vA~~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~ 493 (753)
++....+.+-+.-..+....+|+|+---+..+-+.+.+....-..+++ +.|+ ++++.+|+..|... .+
T Consensus 88 Vpde~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~--l~v~-~e~~~~Rl~~R~~~----~~-- 158 (217)
T 3umf_A 88 VPLEVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVIN--FDVS-EEVMRKRLLKRAET----SN-- 158 (217)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEE--EECC-HHHHHHHHSCC-----------
T ss_pred CCHHHHHHHHHHHHhhccccccCcccccCCCcHHHHHHHHHhCCccCEEEe--ccCC-HHHHHHHHhccccc----CC--
Confidence 111122221111122345678999977677666655554211123444 4575 56666676555321 11
Q ss_pred ChHHHHHHHHHHHhcccccccCCCC----CceEEEeec
Q 004453 494 DFEAGLQDFKNRLANYEKVYEPVDE----GSYIKMIDM 527 (753)
Q Consensus 494 d~e~al~df~~Ri~~y~~~yEpl~e----~~yik~i~~ 527 (753)
..++..+-+.+|++.|.+.-+|+-+ ..-+..||.
T Consensus 159 R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg 196 (217)
T 3umf_A 159 RVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDA 196 (217)
T ss_dssp -CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEET
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 2345556688999999887777642 133445564
No 71
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.52 E-value=1.8e-07 Score=93.96 Aligned_cols=36 Identities=28% Similarity=0.492 Sum_probs=29.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
++++|+++|.|||||||+|+.|+++|++ .+++.|++
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~-----~~i~~d~~ 38 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHA-----AHLATGDM 38 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC-----EEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc-----eEEehhHH
Confidence 4578999999999999999999999764 35666555
No 72
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.51 E-value=1.8e-07 Score=90.81 Aligned_cols=40 Identities=25% Similarity=0.349 Sum_probs=34.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
+.+|+++|.|||||||+|+.|++.|+..|++..+++.|++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~ 42 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV 42 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHH
Confidence 4689999999999999999999999877776777887655
No 73
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.51 E-value=1e-07 Score=92.74 Aligned_cols=134 Identities=21% Similarity=0.208 Sum_probs=70.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~~ 432 (753)
+|+|+|.|||||||+|+.|++.|++. +++.|++++...|... ..++....+..++.... ..++ .+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~D~~~~~~~g~~~-~~~~~~~g~~~~~~~~~---~~~~----~~~~ 70 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVG-----LLDTDVAIEQRTGRSI-ADIFATDGEQEFRRIEE---DVVR----AALA 70 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHSSCH-HHHHHHHCHHHHHHHHH---HHHH----HHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCC-----EEeCchHHHHHcCCCH-HHHHHHhChHHHHHHHH---HHHH----HHHh
Confidence 69999999999999999999998754 5778887775554321 11222222222222211 1222 1221
Q ss_pred CCeEEEEeCCC--CCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH-HHHhcc
Q 004453 433 GGQVGIFDATN--SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK-NRLANY 509 (753)
Q Consensus 433 ~G~vVIlDATn--~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~-~Ri~~y 509 (753)
....+|.+..+ ..+..|+.+. .+ .++||. | +.+++.+|+..|. ..|.+... +.+..++.++ .|.+.|
T Consensus 71 ~~~~vi~~g~~~v~~~~~~~~l~----~~-~vV~L~--~-~~e~~~~Rl~~r~-~r~~~~~~-~~~~~i~~~~~~r~~~~ 140 (184)
T 2iyv_A 71 DHDGVLSLGGGAVTSPGVRAALA----GH-TVVYLE--I-SAAEGVRRTGGNT-VRPLLAGP-DRAEKYRALMAKRAPLY 140 (184)
T ss_dssp HCCSEEECCTTGGGSHHHHHHHT----TS-CEEEEE--C-CHHHHHHHTTCCC-CCSSTTSC-CHHHHHHHHHHHHHHHH
T ss_pred cCCeEEecCCcEEcCHHHHHHHc----CC-eEEEEe--C-CHHHHHHHHhCCC-CCCCccCC-CHHHHHHHHHHHHHHHH
Confidence 23334433322 2334444332 33 455654 6 4666677765542 24555544 4555555554 344444
No 74
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.51 E-value=2.8e-07 Score=89.57 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=62.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCC----CCCCC---CCCHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFR---ADNPEGMEARNEVAAL 421 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~----~~~~~---~~~~~~~~~~~~vA~~ 421 (753)
.+.+|+++|.|||||||+|+.|++.|++. +++.|++ |+...+.... ..++. ..... .....+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~---~~~~~~~~ 74 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFK-----KLSTGDILRDHVARGTPLGERVRPIMERGDLVPDD---LILELIRE 74 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCE-----EECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHH---HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCe-----EecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHH---HHHHHHHH
Confidence 46789999999999999999999987643 4555544 3221110000 00000 00010 00111111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCce-EEEEEEEeCcHHHHHHHHHHhh
Q 004453 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNIRLKI 483 (753)
Q Consensus 422 ~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~-vifIE~~c~d~~~i~rni~~r~ 483 (753)
.+ +.| +|+|+.......+..+..+ .+.+.. -++|.+.|+ .+++.+|+..|.
T Consensus 75 -------~l-~~~--~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~-~e~~~~R~~~R~ 127 (186)
T 3cm0_A 75 -------EL-AER--VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVP-EEELVRRILRRA 127 (186)
T ss_dssp -------HC-CSE--EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECC-HHHHHHHHHHHH
T ss_pred -------Hh-cCC--EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhcc
Confidence 12 233 8999988877776666654 444432 244555675 566666666653
No 75
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.50 E-value=4e-07 Score=88.30 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=34.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
.+|+++|.|||||||+|+.|+++|+..|+...+++.|++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 479999999999999999999999988888888876655
No 76
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.45 E-value=2.7e-07 Score=94.97 Aligned_cols=160 Identities=14% Similarity=0.185 Sum_probs=90.0
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHH----------HH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN----------EV 418 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~----------~v 418 (753)
..|++|+++|.|||||||+|+.|++.++. .+++.|++-|...... ++....... .+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~-----~~is~~~~~r~~~~~~---------~~~g~~i~~~~~~g~~~~~~~ 92 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCY-----CHLSTGDLLREAAEKK---------TELGLKIKNIINEGKLVDDQM 92 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCC-----EEEEHHHHHHHHTTSS---------SHHHHHHHHHHHTTCCCCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC-----eEEecHHHHHHHHhcc---------chHHHHHHHHHhcCCCCcHHH
Confidence 36899999999999999999999988753 3466655433221100 000000000 01
Q ss_pred HHHHHHHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCcHHHHHHHHHHhhhc---------
Q 004453 419 AALAMEDMISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQ--------- 485 (753)
Q Consensus 419 A~~~l~d~~~~l~--~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~v-ifIE~~c~d~~~i~rni~~r~~~--------- 485 (753)
.... +.+.+. ..+..+|+|+...+..+...+.++ ...+..+ .+|.+.|+ ++++.+|+..|...
T Consensus 93 ~~~~---~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p-~e~~~~Rl~~R~~~~~~g~~y~~ 168 (243)
T 3tlx_A 93 VLSL---VDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVP-DEVLVNRISGRLIHKPSGRIYHK 168 (243)
T ss_dssp HHHH---HHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTEEEETTTTEEEET
T ss_pred HHHH---HHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCC-HHHHHHHHHcCCCCcccCccccc
Confidence 1111 112222 237789999976777777776665 3333221 34445675 57777777776421
Q ss_pred --CCCCCC-----------CCChHHHHHHHHHHHhcccccccCCCCC----ceEEEeec
Q 004453 486 --SPDYAE-----------EPDFEAGLQDFKNRLANYEKVYEPVDEG----SYIKMIDM 527 (753)
Q Consensus 486 --~pd~~~-----------~~d~e~al~df~~Ri~~y~~~yEpl~e~----~yik~i~~ 527 (753)
+|.-.. . ..++..+.+.+|++.|.+..+|+.+- ..+..||.
T Consensus 169 ~~~pp~~~~~~~~~~~~l~~-r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~ 226 (243)
T 3tlx_A 169 IFNPPKVPFRDDVTNEPLIQ-REDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDA 226 (243)
T ss_dssp TTBCCSSTTBCTTTCCBCBC-CGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEET
T ss_pred ccCCCcccCccccccccccC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEC
Confidence 010000 0 22445677889999998887776542 34555564
No 77
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.45 E-value=1e-07 Score=95.35 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=83.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCC----CCCCCC---CCHHHHHHHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFRA---DNPEGMEARNEVAALAME 424 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~----~~~~~~---~~~~~~~~~~~vA~~~l~ 424 (753)
.|+|+|.|||||||+|+.|++.++.. +++.|++ |+...+.... ..++.. .... ....+....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~l~ 73 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIP-----HISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDE---VTIGIVKERLG 73 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHH---HHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHh
Confidence 48899999999999999999886543 4666544 3322111000 000000 0111 11111111111
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCcHHHHHHHHHHhhh-----------cCCC-CC
Q 004453 425 DMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQ-----------QSPD-YA 490 (753)
Q Consensus 425 d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~v-ifIE~~c~d~~~i~rni~~r~~-----------~~pd-~~ 490 (753)
.. ..+..+|+|+...+...+..+.+. ...+..+ .+|.+.|++ +++.+|+..|.. ..|. ..
T Consensus 74 ----~~-~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~-e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~ 147 (216)
T 3dl0_A 74 ----KD-DCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDK-DVLMERLTGRRICSVCGTTYHLVFNPPKTP 147 (216)
T ss_dssp ----SG-GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCG-GGHHHHHHTEEEETTTCCEEETTTBCCSST
T ss_pred ----cc-cccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCH-HHHHHHHHCCCcCCccCCccccccCCCccc
Confidence 11 237789999987888877777765 4344332 345556765 556666666511 0000 00
Q ss_pred CC---------CChHHHHHHHHHHHhcccccccCCCCC----ceEEEeec
Q 004453 491 EE---------PDFEAGLQDFKNRLANYEKVYEPVDEG----SYIKMIDM 527 (753)
Q Consensus 491 ~~---------~d~e~al~df~~Ri~~y~~~yEpl~e~----~yik~i~~ 527 (753)
+. -..++..+.+.+|++.|.+..+|+.+- ..+..||.
T Consensus 148 ~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~ 197 (216)
T 3dl0_A 148 GICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNG 197 (216)
T ss_dssp TBCTTTCCBEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 00 001223456678888887777776532 23455564
No 78
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.44 E-value=3.6e-07 Score=91.15 Aligned_cols=159 Identities=18% Similarity=0.184 Sum_probs=84.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCCCCCCCCCCHHHHHHH-------HHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAME 424 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~~~~~~~~~~~~~~~~-------~~vA~~~l~ 424 (753)
.|+++|.|||||||+|+.|++.++.. +++.|++ |+...+... ......+.. ..+....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~r~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~ 69 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIP-----HISTGDMFRAAIKNGTE-------LGLKAKSFMDQGNLVPDEVTIGIVH 69 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHHTTCH-------HHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EeeHHHHHHHHHhcCCH-------HHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 58899999999999999999887643 4555544 332221100 000000000 011111111
Q ss_pred HHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCcHHHHHHHHHHhhh-----------cCCC-
Q 004453 425 DMISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQ-----------QSPD- 488 (753)
Q Consensus 425 d~~~~l~--~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~v-ifIE~~c~d~~~i~rni~~r~~-----------~~pd- 488 (753)
+.+. ..+..+|+|+.......+..+.+. .+.+..+ .+|.+.|+ ++++.+|+..|.. ..|.
T Consensus 70 ---~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~ 145 (216)
T 3fb4_A 70 ---ERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVE-QEELMKRLTGRWICKTCGATYHTIFNPPA 145 (216)
T ss_dssp ---HHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHSEEEETTTCCEEETTTBCCS
T ss_pred ---HHHhcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCCCCccCCccccccCCCC
Confidence 1222 237789999987888877777765 4344332 34445675 5666677766621 0010
Q ss_pred CCCC---------CChHHHHHHHHHHHhcccccccCCCCC----ceEEEeec
Q 004453 489 YAEE---------PDFEAGLQDFKNRLANYEKVYEPVDEG----SYIKMIDM 527 (753)
Q Consensus 489 ~~~~---------~d~e~al~df~~Ri~~y~~~yEpl~e~----~yik~i~~ 527 (753)
..+. -..++..+.+.+|++.|....+|+.+- ..+..||.
T Consensus 146 ~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~ 197 (216)
T 3fb4_A 146 VEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDG 197 (216)
T ss_dssp STTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEEC
Confidence 0000 012344566788888887777776531 23455554
No 79
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.40 E-value=2.6e-06 Score=81.17 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=28.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
+|+++|.|||||||+|+.|++.|++. +++.|.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~-----~i~~d~~~~ 37 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYP-----IIKGSSFEL 37 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCC-----EEECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe-----eecCccccc
Confidence 79999999999999999999998744 355555544
No 80
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.39 E-value=5e-07 Score=90.87 Aligned_cols=119 Identities=13% Similarity=0.079 Sum_probs=62.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh-hhcCCCCCC----CCCC---CCCHHHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR-LKHGVNQSA----DFFR---ADNPEGMEARNEVAALA 422 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr-~~~g~~~~~----~~~~---~~~~~~~~~~~~vA~~~ 422 (753)
++.|+++|.|||||||+|+.|+++|++ .+++.|++-+ ...+..... .++. ....+ ...++....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~-----~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~---~~~~~i~~~ 76 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGL-----AHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDE---IVLGLVKEK 76 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCC-----EEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHH---HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCc-----eEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHH---HHHHHHHHH
Confidence 468999999999999999999999864 3466655433 221110000 0000 00011 111122111
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCce-EEEEEEEeCcHHHHHHHHHHhh
Q 004453 423 MEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNIRLKI 483 (753)
Q Consensus 423 l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~-vifIE~~c~d~~~i~rni~~r~ 483 (753)
+. - ...|..+|+|+...+....+.+.++ ...+.. -++|.+.|+ ++++.+|+..|.
T Consensus 77 l~----~-~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~-~e~~~~Rl~~R~ 133 (217)
T 3be4_A 77 FD----L-GVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEID-DSEIIERISGRC 133 (217)
T ss_dssp HH----T-TTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECC-HHHHHHHHHTEE
T ss_pred Hh----c-cccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCC
Confidence 11 0 1236778899866666666665543 333321 133444574 566677776653
No 81
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.34 E-value=9.1e-07 Score=89.54 Aligned_cols=116 Identities=14% Similarity=0.147 Sum_probs=62.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCC----CCCCCC---CCHHHHHHHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFRA---DNPEGMEARNEVAALAME 424 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~----~~~~~~---~~~~~~~~~~~vA~~~l~ 424 (753)
+|+++|.|||||||+|+.|+++|+. .+++.|++ |+...+.... ..++.. ... +....++...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~-----~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~---~~~~~~i~~~l~ 73 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL-----AHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD---DITIPMVLETLE 73 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC-----EEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCH---HHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-----eEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcH---HHHHHHHHHHHh
Confidence 6899999999999999999998753 45666655 3321110000 000000 001 111222222222
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCc-eEEEEEEEeCcHHHHHHHHHHhh
Q 004453 425 DMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNC-KIIFLETICNDRDIIERNIRLKI 483 (753)
Q Consensus 425 d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~-~vifIE~~c~d~~~i~rni~~r~ 483 (753)
-. . |..+|+|+..........+.++ ...+. .-+.|.+.|+ ++++.+|+..|.
T Consensus 74 ----~~-~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 74 ----SK-G-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLP-REVAKNRIMGRR 127 (223)
T ss_dssp ----HH-C-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTBC
T ss_pred ----cc-c-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHccc
Confidence 11 1 7889999866666666666554 33332 1123444564 567777776663
No 82
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.32 E-value=4.8e-06 Score=82.02 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=27.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcC
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~g 379 (753)
++.+|+++|.|||||||+|+.|++.|+..|
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 357999999999999999999999998766
No 83
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.31 E-value=5.5e-07 Score=85.96 Aligned_cols=133 Identities=14% Similarity=0.215 Sum_probs=68.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~l~~ 432 (753)
.|+++|.|||||||+|+.|++.|++. +++.|++.+...|... ..++....+..++... ..++..+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~g~~~-~~~~~~~~~~~~~~~~-------~~~l~~l~~ 68 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIP-----FYDVDEEVQKREGLSI-PQIFEKKGEAYFRKLE-------FEVLKDLSE 68 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSCH-HHHHHHSCHHHHHHHH-------HHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC-----EEECcHHHHHHcCCCH-HHHHHHhChHHHHHHH-------HHHHHHHhc
Confidence 68999999999999999999988643 5667776654443211 1111112233332111 122223444
Q ss_pred CCeEEEEeC--CCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHhc
Q 004453 433 GGQVGIFDA--TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLAN 508 (753)
Q Consensus 433 ~G~vVIlDA--Tn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~~ 508 (753)
.+.+||.|. ....+..++.+. +.+ .++|++ | +.+++.+|+..|. ..|.+.+ ..+...+.|.++.+.
T Consensus 69 ~~~~Vi~~g~~~~~~~~~~~~l~---~~~-~~i~l~--~-~~e~~~~R~~~r~-~r~~~~~--~~~~i~~~~~~~~~~ 136 (168)
T 2pt5_A 69 KENVVISTGGGLGANEEALNFMK---SRG-TTVFID--I-PFEVFLERCKDSK-ERPLLKR--PLDEIKNLFEERRKI 136 (168)
T ss_dssp SSSEEEECCHHHHTCHHHHHHHH---TTS-EEEEEE--C-CHHHHHHHCBCTT-CCBGGGS--CGGGTHHHHHHHHHH
T ss_pred cCCeEEECCCCEeCCHHHHHHHH---cCC-EEEEEE--C-CHHHHHHHHhCCC-CCCCCcc--hHHHHHHHHHHHHHH
Confidence 566676643 223444444332 222 455554 6 4566666665442 2333321 133444445545443
No 84
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.31 E-value=7.4e-06 Score=83.61 Aligned_cols=34 Identities=21% Similarity=0.094 Sum_probs=29.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEE
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v 384 (753)
.+.+|++.|.|||||||+++.|++.|.. +.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 5689999999999999999999999987 766543
No 85
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.28 E-value=4.1e-06 Score=84.50 Aligned_cols=148 Identities=20% Similarity=0.263 Sum_probs=83.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCCCCCCCCCCHHHHHHHHHHHH-------HHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARNEVAA-------LAM 423 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~~~~~~~~~~~~~~~~~~vA~-------~~l 423 (753)
++|+|.|.|||||+|.|+.|+++++.. .++.|++ |..... .++.+.+....+.. ...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~-----~istGdllR~~i~~----------~t~lg~~~~~~~~~G~lvpd~iv~ 65 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFV-----HISTGDILREAVQK----------GTPLGKKAKEYMERGELVPDDLII 65 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHH----------TCHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCe-----EEcHHHHHHHHHHh----------cChhhhhHHHHHhcCCcCCHHHHH
Confidence 368899999999999999999997654 4666655 432210 11111111111110 011
Q ss_pred HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCcHHHHHHHHHHhhhcC-----------CCCC
Q 004453 424 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQS-----------PDYA 490 (753)
Q Consensus 424 ~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~v-ifIE~~c~d~~~i~rni~~r~~~~-----------pd~~ 490 (753)
+-+.+.+.+ ..-+|+|+-.-+..+.+.+..+ .+.+..+ .+|++.|+++ ++.+|+..|.... |.-.
T Consensus 66 ~lv~~~l~~-~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e-~l~~Rl~~R~~~~~~g~~y~~~~~pp~~ 143 (206)
T 3sr0_A 66 ALIEEVFPK-HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDE-VVIERLSGRRINPETGEVYHVKYNPPPP 143 (206)
T ss_dssp HHHHHHCCS-SSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHH-HHHHHHHTEEECTTTCCEEETTTBCCCT
T ss_pred HHHHHhhcc-CCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHH-HHHHHHhCCccccCCCceeeeeccCCCC
Confidence 111122333 3348999988888888877666 4444432 3455668654 4555666553210 1000
Q ss_pred ----CCCChHHHHHHHHHHHhcccccccCCC
Q 004453 491 ----EEPDFEAGLQDFKNRLANYEKVYEPVD 517 (753)
Q Consensus 491 ----~~~d~e~al~df~~Ri~~y~~~yEpl~ 517 (753)
.. ..++-.+-+.+|++.|++..+|+-
T Consensus 144 g~~l~~-r~DD~~e~i~~Rl~~Y~~~t~pl~ 173 (206)
T 3sr0_A 144 GVKVIQ-REDDKPEVIKKRLEVYREQTAPLI 173 (206)
T ss_dssp TCCCBC-CGGGSHHHHHHHHHHHHHHTTHHH
T ss_pred Cceecc-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 01 235555678899999988888874
No 86
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.26 E-value=2.2e-07 Score=94.01 Aligned_cols=36 Identities=28% Similarity=0.514 Sum_probs=28.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
++.+|+++|.|||||||+|+.|++.|++. +++.|++
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~~ 41 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELK-----HLSSGDL 41 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSE-----EEEHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCe-----EEechHH
Confidence 45789999999999999999999987643 4555543
No 87
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.25 E-value=3.5e-06 Score=96.95 Aligned_cols=119 Identities=17% Similarity=0.179 Sum_probs=69.8
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcC-CceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~g-i~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~ 427 (753)
.++.+|+|+|++|||||||++.|++.|...+ .....++.|++++.+ .....|........++....++..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l---~~~l~f~~~~r~~~~r~i~~v~q~------ 437 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHL---SSELGFSKAHRDVNVRRIGFVASE------ 437 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHT---TSSCCCSHHHHHHHHHHHHHHHHH------
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhh---ccccCCCHHHHHHHHHHHHHHHHH------
Confidence 3567999999999999999999999997544 345668888886532 122223221222222222223222
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHH
Q 004453 428 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIR 480 (753)
Q Consensus 428 ~~l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~ 480 (753)
+...+.++|..........|+.++++ ...+ .+++|.+.|+ .+++.+|++
T Consensus 438 --l~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~-~e~~~~R~~ 487 (552)
T 3cr8_A 438 --ITKNRGIAICAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATP-IETCESRDR 487 (552)
T ss_dssp --HHHTTCEEEECCCCCCHHHHHHHHHHHHTTS-EEEEEEECC-----------
T ss_pred --HHhcCCEEEEecCCccHHHHHHHHHHHHHcC-CEEEEEEcCC-HHHHHHhcc
Confidence 33467888888776667777777777 5545 5666666665 455555553
No 88
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.24 E-value=1.7e-05 Score=78.45 Aligned_cols=37 Identities=32% Similarity=0.392 Sum_probs=33.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEe
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n 386 (753)
++.+|+++|.|||||||+|+.|++.|+..+++++.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 4679999999999999999999999999898887764
No 89
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.24 E-value=1.5e-06 Score=83.24 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=31.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcC
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG 396 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g 396 (753)
+|+++|.|||||||+|+.|++.|++. +++.|++.+...|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~d~~~~~~~g 42 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYE-----FVDTDIFMQHTSG 42 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc-----EEcccHHHHHHhC
Confidence 79999999999999999999998643 5667777664433
No 90
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.24 E-value=9.8e-06 Score=79.09 Aligned_cols=112 Identities=12% Similarity=0.129 Sum_probs=63.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCC-CCH----HHHHHHHHHHHHHHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRA-DNP----EGMEARNEVAALAMEDM 426 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~-~~~----~~~~~~~~vA~~~l~d~ 426 (753)
.+|+++|.|||||||+++.|++.+. -...++.+++++... ..+..+ ... ..++.+...+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~----g~~~i~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~----- 68 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD----NSAYIEGDIINHMVV-----GGYRPPWESDELLALTWKNITDLTVN----- 68 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS----SEEEEEHHHHHTTCC-----TTCCCGGGCHHHHHHHHHHHHHHHHH-----
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC----CeEEEcccchhhhhc-----cccccCccchhHHHHHHHHHHHHHHH-----
Confidence 5899999999999999999987532 124566777655321 112111 111 112222222222
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHH-H--cCCceEEEEEEEeCcHHHHHHHHHHh
Q 004453 427 ISWMHEGGQVGIFDATNSSRKRRNMLMKM-A--EGNCKIIFLETICNDRDIIERNIRLK 482 (753)
Q Consensus 427 ~~~l~~~G~vVIlDATn~~~~~R~~l~~l-~--~~~~~vifIE~~c~d~~~i~rni~~r 482 (753)
+...+..+|+|.+. ....++.++++ . ..+.++.++.+.| +.+++.+|++.|
T Consensus 69 ---~~~~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~-~~e~l~~R~~~r 122 (189)
T 2bdt_A 69 ---FLLAQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWT-NREELLRRDALR 122 (189)
T ss_dssp ---HHHTTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEEC-CHHHHHHHTTTS
T ss_pred ---HHhcCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeC-CHHHHHHHHHhc
Confidence 22357788999864 45555555555 2 3344565565556 566777777655
No 91
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.18 E-value=9.6e-07 Score=85.35 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=31.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcC
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG 396 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g 396 (753)
.|+++|.|||||||+|+.|++.|++ ..++.|++++...|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~-----~~~d~d~~~~~~~g 44 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL-----VFLDSDFLIEQKFN 44 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC-----EEEEHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC-----CEEcccHHHHHHcC
Confidence 5899999999999999999999874 35677777665444
No 92
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.18 E-value=9.9e-06 Score=83.79 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=28.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
.+|+++|.|||||||+|++|++.+++ .+++.|++
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~-----~~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGW-----PVVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCC-----CEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCC-----eEEeccHH
Confidence 37999999999999999999998764 35666664
No 93
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.11 E-value=4.7e-06 Score=84.67 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=29.8
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
..+..|+++|.|||||||+|+.|+++|++ .+++.|++
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~-----~~i~~d~l 50 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCV-----CHLATGDM 50 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTC-----EEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC-----ceecHHHH
Confidence 34568999999999999999999999864 34666554
No 94
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.09 E-value=4.4e-06 Score=86.76 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=67.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhc-CCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKH-GVNQSADFFRADNPEGMEARNE-VAALAMEDMISW 429 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~-g~~~~~~~~~~~~~~~~~~~~~-vA~~~l~d~~~~ 429 (753)
..|+++|.|||||||+++.|++.|++. .++.|.+.+... |.. ...+|....+..++..+. ++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~-----~~d~d~~~~~~~~g~~-i~~i~~~~ge~~fr~~e~~~l~~-------- 114 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYT-----FFDCDTLIEQAMKGTS-VAEIFEHFGESVFREKETEALKK-------- 114 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEHHHHHHHHSTTSC-HHHHHHHHCHHHHHHHHHHHHHH--------
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCc-----EEeCcHHHHHHhcCcc-HHHHHHHhCcHHHHHHHHHHHHH--------
Confidence 479999999999999999999998764 466666655443 221 122233334444443332 2222
Q ss_pred HhcC-CeEEEEeCC--CCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHh-hhcCCCCCCCCC--------hHH
Q 004453 430 MHEG-GQVGIFDAT--NSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK-IQQSPDYAEEPD--------FEA 497 (753)
Q Consensus 430 l~~~-G~vVIlDAT--n~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r-~~~~pd~~~~~d--------~e~ 497 (753)
+... ...||.+.. ....+.+..+ . .+ .++|+. | +.+.+.+|+..+ ...+|-..+. + .+.
T Consensus 115 l~~~~~~~Via~GgG~v~~~~~~~~l---~-~~-~vV~L~--a-~~e~l~~Rl~~~~~~~Rpl~~~~-~~~d~~~~~~~~ 185 (250)
T 3nwj_A 115 LSLMYHQVVVSTGGGAVIRPINWKYM---H-KG-ISIWLD--V-PLEALAHRIAAVGTGSRPLLHDD-ESGDTYTAALNR 185 (250)
T ss_dssp HHHHCSSEEEECCGGGGGSHHHHHHH---T-TS-EEEEEE--C-CHHHHHHHHHC-----------------CHHHHHHH
T ss_pred HHhhcCCcEEecCCCeecCHHHHHHH---h-CC-cEEEEE--C-CHHHHHHHHhhcCCCCCCcccCC-CcccchhhHHHH
Confidence 2212 344554432 2233444333 2 23 566765 5 456666666542 2335555442 2 234
Q ss_pred HHHHHHHHHhccc
Q 004453 498 GLQDFKNRLANYE 510 (753)
Q Consensus 498 al~df~~Ri~~y~ 510 (753)
..+.+.+|.+.|+
T Consensus 186 l~~l~~eR~~lY~ 198 (250)
T 3nwj_A 186 LSTIWDARGEAYT 198 (250)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 4556666666653
No 95
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.05 E-value=1e-05 Score=79.93 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=33.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEe
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n 386 (753)
.+.+|+++|.|||||||+|+.|+++|+..+++++++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4679999999999999999999999999898887764
No 96
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.04 E-value=5.1e-06 Score=83.05 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=26.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
.|+++|.|||||||+|+.|++.++. .+++.|++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~-----~~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI-----PQISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC-----CEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-----eEEeHHHH
Confidence 4899999999999999999998753 34666554
No 97
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.04 E-value=7.2e-05 Score=72.81 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=27.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEE
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v 384 (753)
++|+++|.|||||||+|+.|+++|...|+....
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 379999999999999999999999766766543
No 98
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.03 E-value=4.8e-06 Score=79.73 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=31.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcC
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG 396 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g 396 (753)
-.|+++|.|||||||+|+.|+++|++. +++.|++.+...|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~-----~id~D~~~~~~~g 47 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLE-----VLDTDMIISERVG 47 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHhC
Confidence 388999999999999999999998754 4666666554443
No 99
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.98 E-value=1.1e-05 Score=78.30 Aligned_cols=30 Identities=37% Similarity=0.439 Sum_probs=25.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCce
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDT 382 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t 382 (753)
+|+++|.|||||||+|+.|++.|...|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~ 31 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFV 31 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 799999999999999999999986555543
No 100
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.94 E-value=4.4e-06 Score=80.90 Aligned_cols=38 Identities=34% Similarity=0.383 Sum_probs=30.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
.+.+|+++|+|||||||+|+.|++.|+. .+++.|++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~-----~~~~~d~~~~ 47 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGL-----KYINVGDLAR 47 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCC-----EEEEHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCC-----eEEEHHHHHh
Confidence 3457899999999999999999999754 3466666644
No 101
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.93 E-value=0.00033 Score=70.78 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=32.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
++.+|++.|.+||||||+++.|+++|...|+++...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 467999999999999999999999999888887655
No 102
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.93 E-value=6.2e-06 Score=78.99 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=31.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 394 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~ 394 (753)
+.+|+++|.|||||||+++.|+..|++ .+++.|++.+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~-----~~id~d~~~~~~ 42 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM-----EFYDSDQEIEKR 42 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTC-----EEEEHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEeccHHHHHH
Confidence 357999999999999999999998764 456777665433
No 103
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.92 E-value=7.5e-06 Score=93.28 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=50.5
Q ss_pred ccccCCCcccchhhhhhcccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhh-cC-CceEEEeccc
Q 004453 323 TKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LG-HDTKHFNVGK 389 (753)
Q Consensus 323 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~-~g-i~t~v~n~d~ 389 (753)
.....|++......+.+......+..+.+.+||++|+|||||||||++|++.|++ .| ..+..++.|+
T Consensus 367 ~G~~~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 367 VGGEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp HTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred CCCCCCccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 3456777777777777777766555667799999999999999999999999997 53 3445554433
No 104
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.92 E-value=4.3e-05 Score=75.77 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=24.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.+.+|+++|.|||||||+++.|++.+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 466899999999999999999999874
No 105
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=97.90 E-value=2.1e-05 Score=70.88 Aligned_cols=79 Identities=16% Similarity=0.247 Sum_probs=59.7
Q ss_pred CCCceEEEEEEEEecccCCCceEEEecCCCccCCCCccccccCcccCCCceE-EEEecCCCCCceeEEEEEecCCCCCce
Q 004453 26 HAGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWE-LSFVVPPNHETLDFKFLLKPKYGNGPC 104 (753)
Q Consensus 26 ~~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~-~~l~~~~~~~~leyKf~~~~~~~~~~~ 104 (753)
+.|.++-|..+ + .=+.+.|-.. +.+|+|++..+++|+...++.|. .++++|.- ..||||| + +...
T Consensus 2 ~~g~~vtiyY~---~---g~~~vylHyg-~~~g~Wt~~~~v~M~~~~~~gw~~~TI~l~~g-~~~~~~F--~----dG~~ 67 (104)
T 2laa_A 2 GTGNKVTIYYK---K---GFNSPYIHYR-PAGGSWTAAPGVKMQDAEISGYAKITVDIGSA-SQLEAAF--N----DGNN 67 (104)
T ss_dssp CCCCEEEEEEE---C---SSSSCEEEEE-ETTSCCCSSSCEECEEETTTTEEEEEEECTTC-SCEEEEE--E----CSSS
T ss_pred CCCCEEEEEEc---C---CCCcEEEEEc-CCCCCCCcCCccccccccCCCeEEEEEECCCC-CEEEEEE--e----CCCC
Confidence 35666666666 2 2334444444 77899999999999999999995 99999974 4899999 2 3346
Q ss_pred eeccCCCcccccCC
Q 004453 105 IVEEGPNRLLTGGA 118 (753)
Q Consensus 105 ~wE~g~NR~l~~~~ 118 (753)
.||++.||-++.+.
T Consensus 68 ~WDNn~g~Nyt~~~ 81 (104)
T 2laa_A 68 NWDSNNTKNYSFST 81 (104)
T ss_dssp CEESTTTSCEEECS
T ss_pred cCcCCCCccEEecC
Confidence 89999999987653
No 106
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.90 E-value=0.00046 Score=69.80 Aligned_cols=30 Identities=33% Similarity=0.360 Sum_probs=28.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCC
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi 380 (753)
+++|++.|.+||||||+++.|+++|...|+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 469999999999999999999999998887
No 107
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.88 E-value=5.2e-05 Score=77.90 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=36.5
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhc-----CCceEEEeccchhh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-----GHDTKHFNVGKYRR 392 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~-----gi~t~v~n~d~yRr 392 (753)
.++++|.++|.|||||||+|+.|++.|++. +..+.+++.|++-+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 467899999999999999999999998864 45677888888743
No 108
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.86 E-value=1.6e-05 Score=79.87 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=26.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCC
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi 380 (753)
++.+|+++|.|||||||+|+.|+++|++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 4568999999999999999999999875443
No 109
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.86 E-value=0.00017 Score=74.18 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=31.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCc-eEEE
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHD-TKHF 385 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~-t~v~ 385 (753)
++.+|++.|.+||||||+++.|+++|...+++ +..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 46799999999999999999999999998888 5444
No 110
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.79 E-value=1.4e-05 Score=79.16 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=27.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEE
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v 384 (753)
+|+++|.+||||||+++.|+++|...++++.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~ 33 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT 33 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 79999999999999999999999876655543
No 111
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.75 E-value=0.00015 Score=70.28 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=31.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
.+.+|+++|.|||||||+++.|+.. .+.....++.+++++
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~~~ 47 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDDLWG 47 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccchhh
Confidence 3568999999999999999999875 333455677777755
No 112
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.70 E-value=6.7e-05 Score=77.01 Aligned_cols=147 Identities=18% Similarity=0.241 Sum_probs=76.3
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch-hhhhcCCCCCCCCCCCCCHHHHHHHH----------H
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN----------E 417 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y-Rr~~~g~~~~~~~~~~~~~~~~~~~~----------~ 417 (753)
+..+-+-+.|.|||||||+|+.|++.++.. .++.|++ |..... .++.+..... +
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~~~g~~-----~is~gdllR~~~~~----------~t~lG~~i~~~~~~G~lvpde 70 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKEKFGIP-----QISTGDMLRAAVKA----------GTPLGVEAKTYMDEGKLVPDS 70 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHHHHTCC-----EECHHHHHHHHHHT----------TCHHHHHHHHHHTTTCCCCHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHHHhCCC-----eeechHHHHHhccC----------CChHHHHHHHHHhhccccccH
Confidence 445667899999999999999999987644 3555544 332111 0111111000 1
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhc----------
Q 004453 418 VAALAMEDMISWMHE--GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ---------- 485 (753)
Q Consensus 418 vA~~~l~d~~~~l~~--~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~---------- 485 (753)
+....+. +.+.+ .+..+|+|...-+..+-+.+.+....--.++ .+.|+ ++++.+|+..|...
T Consensus 71 i~~~ll~---~~l~~~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI--~Ldvp-~e~l~~Rl~~R~~~~~~G~~Yh~~ 144 (230)
T 3gmt_A 71 LIIGLVK---ERLKEADCANGYLFDGFPRTIAQADAMKEAGVAIDYVL--EIDVP-FSEIIERMSGRRTHPASGRTYHVK 144 (230)
T ss_dssp HHHHHHH---HHHHSGGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEE--EECCC-HHHHHHHHHTEEEETTTTEEEETT
T ss_pred HHHHHHH---HHHhCcccCCCeEecCCCCcHHHHHHHHHhCCCccEEE--EEeCC-HHHHHHHHHcCCcccccCCccccc
Confidence 1111111 12221 2345788996556555444433211111344 44575 56666677766421
Q ss_pred -CCCCC-C----------CCChHHHHHHHHHHHhcccccccCCC
Q 004453 486 -SPDYA-E----------EPDFEAGLQDFKNRLANYEKVYEPVD 517 (753)
Q Consensus 486 -~pd~~-~----------~~d~e~al~df~~Ri~~y~~~yEpl~ 517 (753)
+|.-. + . ..++-.+-+.+|++.|.+.-+|+-
T Consensus 145 ~~pp~~~~~~d~~g~~L~~-R~DD~~e~i~~Rl~~y~~~t~pl~ 187 (230)
T 3gmt_A 145 FNPPKVEGKDDVTGEPLVQ-RDDDKEETVKKRLDVYEAQTKPLI 187 (230)
T ss_dssp TBCCSSTTBCTTTCCBCBC-CGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCcCCCccCcccc-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11000 0 1 345566778999999988777764
No 113
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.69 E-value=0.00024 Score=69.58 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
+.+|+++|.+||||||+++.|+..+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999998753
No 114
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.67 E-value=0.00016 Score=70.57 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=23.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
+|+++|.|||||||+|+.|+++|+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 6899999999999999999999874
No 115
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.63 E-value=0.00012 Score=72.85 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=32.1
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
++...+|.++|.+||||||+|+.|++.++ ..+++.|++-+
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg-----~~vid~D~~~~ 48 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNKYG-----AHVVNVDRIGH 48 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcC-----CEEEECcHHHH
Confidence 45678999999999999999999999864 34577776643
No 116
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.57 E-value=0.00021 Score=77.18 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=30.5
Q ss_pred ccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 343 MLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 343 ~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
|..+....+.+|+++|.+||||||||..|++.|+ ..++|.|.+
T Consensus 32 m~~~~~~~~~lIvI~GPTgsGKTtLa~~LA~~l~-----~eiIs~Ds~ 74 (339)
T 3a8t_A 32 LRRQRHRKEKLLVLMGATGTGKSRLSIDLAAHFP-----LEVINSDKM 74 (339)
T ss_dssp ------CCCEEEEEECSTTSSHHHHHHHHHTTSC-----EEEEECCSS
T ss_pred cccccccCCceEEEECCCCCCHHHHHHHHHHHCC-----CcEEccccc
Confidence 4333344567999999999999999999998754 556776654
No 117
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.56 E-value=0.00027 Score=72.07 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=26.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcC
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~g 379 (753)
.+.+|.+.|.+||||||+|+.|++.|++..
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~ 42 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHF 42 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEE
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcE
Confidence 467999999999999999999999987543
No 118
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.56 E-value=0.00053 Score=66.25 Aligned_cols=132 Identities=15% Similarity=0.182 Sum_probs=73.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~~ 429 (753)
.+-+++|+|.+||||||+++.+. . ...+++.|.+|..... .+...+ .....++.....+...+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~-----~--~~~~~~~d~~~g~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~----- 71 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF-----K--PTEVISSDFCRGLMSD-DENDQT---VTGAAFDVLHYIVSKRLQ----- 71 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS-----C--GGGEEEHHHHHHHHCS-STTCGG---GHHHHHHHHHHHHHHHHH-----
T ss_pred CCEEEEEECCCCCCHHHHHHHHc-----c--CCeEEccHHHHHHhcC-cccchh---hHHHHHHHHHHHHHHHHh-----
Confidence 35699999999999999999843 1 2234666666653321 111111 122223333333333333
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHhc
Q 004453 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLAN 508 (753)
Q Consensus 430 l~~~G~vVIlDATn~~~~~R~~l~~l-~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~~ 508 (753)
.|..+++|+++.....|++...+ .....+..++-+.. +...+..+.+.|.. . . -+++.+.....++..
T Consensus 72 ---~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDE-Pt~~Ld~~~~~R~~----~-~--~~~~vi~~~~~~l~~ 140 (171)
T 4gp7_A 72 ---LGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNL-PEKVCQERNKNRTD----R-Q--VEEYVIRKHTQQMKK 140 (171)
T ss_dssp ---TTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECC-CHHHHHHHHHTCSS----C-C--CCHHHHHHHHHHHHH
T ss_pred ---CCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeC-CHHHHHHHHhcccC----C-C--CCHHHHHHHHHHhhh
Confidence 68899999999988766666666 33333443433223 34455555544432 1 2 246666666555543
No 119
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.56 E-value=6.4e-05 Score=75.17 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=25.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcC
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~g 379 (753)
+.+|.+.|.+||||||+|+.|++.|++..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~ 34 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPL 34 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCE
Confidence 45899999999999999999999987653
No 120
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.56 E-value=0.00063 Score=71.34 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=30.0
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
.++++|+++|.|||||||+|+.|++ +++ .+++.|++.+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~-lg~-----~~id~D~~~~ 110 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN-LGA-----YIIDSDHLGH 110 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH-HTC-----EEEEHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCC-----cEEehhHHHH
Confidence 4678999999999999999999994 432 4577776643
No 121
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.54 E-value=0.00035 Score=71.48 Aligned_cols=36 Identities=22% Similarity=0.156 Sum_probs=28.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc----CCceEEE
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL----GHDTKHF 385 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~----gi~t~v~ 385 (753)
++++|++.|.+||||||+++.|+++|... |+++...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 56799999999999999999999999887 8777554
No 122
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.48 E-value=0.00039 Score=67.73 Aligned_cols=38 Identities=29% Similarity=0.514 Sum_probs=29.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHH-HhhcCCceEEEeccchhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRY-LRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~-L~~~gi~t~v~n~d~yRr 392 (753)
.+..|+++|.|||||||+|+.|++. +++ .+++.|++-+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~-----~~id~d~~~~ 47 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGF-----QHLEVGKLVK 47 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTE-----EEEEHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC-----EEeeHHHHHH
Confidence 3568999999999999999999998 443 4566666544
No 123
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.46 E-value=0.00088 Score=66.68 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=29.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
.+++|+++|.+||||||+|+.|++ ++ ..+++.|++-+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg-----~~~id~D~~~~ 39 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LG-----INVIDADIIAR 39 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TT-----CEEEEHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cC-----CEEEEccHHHH
Confidence 468999999999999999999987 53 24566665544
No 124
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.43 E-value=0.0011 Score=71.12 Aligned_cols=35 Identities=34% Similarity=0.287 Sum_probs=28.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
+.+|+++|.+||||||+|+.|++.++ ..+++.|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~-----~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP-----CELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC-----CcEEeccch
Confidence 46899999999999999999999875 345666543
No 125
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.43 E-value=0.0053 Score=61.48 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=28.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
..|++-|+.||||||.++.|+++|. .++++...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~ 35 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT 35 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe
Confidence 4799999999999999999999996 36666544
No 126
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.39 E-value=6.6e-05 Score=74.92 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=23.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.+.+|+++|.+|+||||+++.|++.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999998764
No 127
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.38 E-value=0.0012 Score=67.33 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=26.6
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcC
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~g 379 (753)
.+|.+|+++|.|||||||+++.|+++++...
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 3467999999999999999999999986544
No 128
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.37 E-value=0.0011 Score=65.55 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=30.3
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
..+.+|.++|.|||||||+|+.|++.+. ...+++.|++
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 3567999999999999999999998652 3456777766
No 129
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.34 E-value=0.00033 Score=68.40 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=22.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.+|+++|.+||||||+++.|...+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3688999999999999999998875
No 130
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.34 E-value=0.00025 Score=72.30 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=33.0
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhh-cCCceEE
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKH 384 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~-~gi~t~v 384 (753)
.++.+|++.|++||||||+++.|+++|.. .|+++..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 46789999999999999999999999999 8888776
No 131
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.33 E-value=0.00063 Score=76.15 Aligned_cols=44 Identities=30% Similarity=0.460 Sum_probs=39.8
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
.+|.+|+++|++|+||||++.+|+.+|...|.++-+++.|-+|-
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 35899999999999999999999999998899999998887754
No 132
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.30 E-value=0.00061 Score=66.73 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=29.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 393 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~ 393 (753)
+|.++|.|||||||+|+.|++.|+. .+++.|++.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~-----~~~d~d~~~~~ 39 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV-----PYLSSGLLYRA 39 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC-----CEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC-----ceeccchHHHh
Confidence 8999999999999999999998763 34666666553
No 133
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.17 E-value=0.00047 Score=67.73 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=28.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
+|+++|.|||||||+|+.|++ ++ ..+++.|++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g-----~~~i~~d~~~~ 36 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG-----AYVLDADKLIH 36 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT-----CEEEEHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC-----CEEEEccHHHH
Confidence 689999999999999999998 63 45677776644
No 134
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.15 E-value=0.0018 Score=64.24 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
+||++|.+|+|||||+++|.+.+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999987753
No 135
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.14 E-value=0.0034 Score=63.43 Aligned_cols=119 Identities=15% Similarity=0.139 Sum_probs=65.5
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCC----------CCCCCCCC---CH------
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQ----------SADFFRAD---NP------ 409 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~----------~~~~~~~~---~~------ 409 (753)
+.-..|-++|.+||||||+|+.|++ +++ .+++.|.+-+.....+. ...++.++ +.
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~-~g~-----~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~ 80 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA-RGA-----SLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRAL 80 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH-TTC-----EEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH-CCC-----cEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHH
Confidence 4456899999999999999999987 544 35666766554432211 12233222 22
Q ss_pred -----HHHHHHHHHHH-HHHHHHHHHHhcC-CeEEEEeCCCCCH-HHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHH
Q 004453 410 -----EGMEARNEVAA-LAMEDMISWMHEG-GQVGIFDATNSSR-KRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 481 (753)
Q Consensus 410 -----~~~~~~~~vA~-~~l~d~~~~l~~~-G~vVIlDATn~~~-~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~ 481 (753)
+..+.++.+.- ...+.+.+++.+. +..+|+|+.-+.+ .. +..+. + .+++| .|+ +++..+|+..
T Consensus 81 vF~d~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~---~~~~~--D-~vi~V--~ap-~e~r~~Rl~~ 151 (210)
T 4i1u_A 81 IFSDEDARRRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRN---WKARC--D-RVLVV--DCP-VDTQIARVMQ 151 (210)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHH---HHHHC--S-EEEEE--ECC-HHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCC---ccccC--C-eEEEE--ECC-HHHHHHHHHh
Confidence 22222232222 2223455556544 4578999987655 33 22221 2 35555 464 5655666655
Q ss_pred h
Q 004453 482 K 482 (753)
Q Consensus 482 r 482 (753)
|
T Consensus 152 R 152 (210)
T 4i1u_A 152 R 152 (210)
T ss_dssp H
T ss_pred c
Confidence 5
No 136
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.09 E-value=0.00058 Score=66.80 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=24.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
++.+|+++|.|||||||+|+.|++.|
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999987
No 137
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.08 E-value=0.0078 Score=59.76 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=30.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
++|++-|+.||||||.++.|+++|...|+++...
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4789999999999999999999999999887665
No 138
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.04 E-value=0.0042 Score=61.04 Aligned_cols=35 Identities=26% Similarity=0.201 Sum_probs=27.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
.+|.++|.|||||||+++.|+. ++ ..+++.|++.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg-----~~~id~d~~~~ 37 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LG-----VPLVDADVVAR 37 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TT-----CCEEEHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CC-----CcccchHHHHH
Confidence 5899999999999999999987 43 23567776644
No 139
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.03 E-value=0.00068 Score=69.62 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=30.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
.|++|+++|.|||||||+|+.|++.|++. .++.|.+.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~-----~~d~g~~~r 45 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGAR-----YLDTGAMYR 45 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC-----cccCCcHHH
Confidence 57899999999999999999999998643 466666543
No 140
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.99 E-value=0.0018 Score=63.33 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
+.+|+++|.|||||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999999876
No 141
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.98 E-value=0.0024 Score=71.30 Aligned_cols=44 Identities=32% Similarity=0.421 Sum_probs=39.5
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
..|.+|+++|++|+||||++..|+.+|...|.++-+++.|-||-
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~ 138 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP 138 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch
Confidence 35889999999999999999999999998899998888887754
No 142
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.81 E-value=0.0068 Score=61.29 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=62.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhh--cCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHH---------HH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNE---------VA 419 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~--~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~---------vA 419 (753)
..+++++|.+|||||||.+.|...+.. ...... +.....|. +.....+|... +...+..+.. +.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~-~ttr~~~~---~e~~gi~y~fq-~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVS-HTTRQPRP---GEVHGEHYFFV-NHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCC-EECSCCCT---TCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEET
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEE-ecCCCCCc---ccccCceEEEC-CHHHHHHHHhcCHHHHHHHHH
Confidence 459999999999999999999987641 111111 21111111 10011122111 2222221110 00
Q ss_pred H----HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHh
Q 004453 420 A----LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (753)
Q Consensus 420 ~----~~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r 482 (753)
. ...+.+.+++ +.|.++|+| .....+..++++...+. .+|| ...+.+.+++|+..|
T Consensus 91 ~~~yg~~~~~v~~~l-~~G~illLD---LD~~~~~~i~~~l~~~~-tI~i--~th~~~~l~~Rl~~r 150 (219)
T 1s96_A 91 GNYYGTSREAIEQVL-ATGVDVFLD---IDWQGAQQIRQKMPHAR-SIFI--LPPSKIELDRRLRGR 150 (219)
T ss_dssp TEEEEEEHHHHHHHH-TTTCEEEEE---CCHHHHHHHHHHCTTCE-EEEE--ECSSHHHHHHHHHTT
T ss_pred hccCCCCHHHHHHHH-hcCCeEEEE---ECHHHHHHHHHHccCCE-EEEE--ECCCHHHHHHHHHHc
Confidence 0 0001111222 369999999 78888888888743343 3343 345778888888544
No 143
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.76 E-value=0.0062 Score=64.86 Aligned_cols=43 Identities=23% Similarity=0.355 Sum_probs=36.9
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
..+.+|+++|.+|+||||++..|+..+...+.++.+++.|-+|
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 3578999999999999999999999998778788777776554
No 144
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.74 E-value=0.00071 Score=71.43 Aligned_cols=43 Identities=16% Similarity=0.294 Sum_probs=35.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
++.+|.++|-+||||||+|+.|++.|+..+.+..+++.|+|-+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 4568999999999999999999999988888888999998743
No 145
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.66 E-value=0.0049 Score=68.80 Aligned_cols=44 Identities=25% Similarity=0.392 Sum_probs=39.4
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhc-CCceEEEeccchhh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKYRR 392 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~-gi~t~v~n~d~yRr 392 (753)
..|.+|+++|.+|+||||++..|+.+|... |.++-+++.|-+|-
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~ 142 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRP 142 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 457899999999999999999999999988 99999999987653
No 146
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.64 E-value=0.0006 Score=66.53 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=30.7
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
..++.+|.++|.|||||||+|+.|++. + ..+++.|++-+
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g-----~~~id~d~~~~ 43 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-G-----YPVLDLDALAA 43 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-T-----CCEEEHHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-C-----CEEEcccHHHH
Confidence 456889999999999999999999986 3 34577776543
No 147
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.63 E-value=0.0074 Score=68.60 Aligned_cols=44 Identities=32% Similarity=0.455 Sum_probs=37.3
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
.++.+|+++|+||+||||++.+|+.+|...|.++-+++.|-+|-
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~ 142 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRA 142 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 46789999999999999999999999988888888888876653
No 148
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.61 E-value=0.0084 Score=60.70 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=25.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
++.+|++.|.+||||||+++.|+++|..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4579999999999999999999999876
No 149
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.53 E-value=0.0059 Score=58.71 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=31.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh-hcCCceEEEeccch
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKY 390 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~-~~gi~t~v~n~d~y 390 (753)
+..++++|.||+||||++++|+..+. ..|.....++..++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 45789999999999999999999886 55666656655444
No 150
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.52 E-value=0.0027 Score=62.66 Aligned_cols=43 Identities=28% Similarity=0.302 Sum_probs=36.6
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
..+.+|.++|.+||||||+++.|+..+...+....+++.|.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 4578999999999999999999999987777777777767654
No 151
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.50 E-value=0.0017 Score=63.07 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
..+|+++|.+||||||+++.|.+.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999998764
No 152
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.46 E-value=0.013 Score=63.47 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=30.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
+.+|+++|.+||||||+|+.|++.|+ ..+++.|.+
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 36999999999999999999999875 467787765
No 153
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.42 E-value=0.015 Score=62.26 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=37.1
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
..+.+|.++|.+|+||||++..|+..+...+.++-+++.|-+|
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR 145 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 4578999999999999999999999998888888888776553
No 154
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.33 E-value=0.0015 Score=65.02 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=29.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
+.+|+++|.|||||||+|+.|++.+++ ..++.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~-----~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQW-----HLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTC-----EEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC-----CcccCcceee
Confidence 458999999999999999999998764 3456665544
No 155
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.29 E-value=0.0052 Score=64.62 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=31.7
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
...|..++++|.||+|||++|++|++.+ +.....++.+++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l 72 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGEL 72 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHh
Confidence 3467788999999999999999999997 455556665544
No 156
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.25 E-value=0.019 Score=63.97 Aligned_cols=42 Identities=36% Similarity=0.366 Sum_probs=37.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
.+.+|+++|.+|+||||++..|+..+...+.++.+++.|-+|
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 577899999999999999999999998888888888887655
No 157
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.20 E-value=0.031 Score=58.13 Aligned_cols=31 Identities=35% Similarity=0.488 Sum_probs=26.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCC
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi 380 (753)
.+.-|+++|-||+|||++|+++++.+...+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 4457899999999999999999999976544
No 158
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.10 E-value=0.019 Score=61.43 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=30.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc--------CCceEEEec
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL--------GHDTKHFNV 387 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~--------gi~t~v~n~ 387 (753)
.+..++++|.||+|||++|+++++.+... +.....++.
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 34589999999999999999999988543 555555654
No 159
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.09 E-value=0.017 Score=61.14 Aligned_cols=41 Identities=34% Similarity=0.486 Sum_probs=36.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
+.+|+++|.+|+||||++..|+..+...+.++-+++.|-+|
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 77888999999999999999999998888888888877554
No 160
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.04 E-value=0.0014 Score=67.50 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=25.1
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
..++.+|++.|.+||||||+|+.|+++|.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34678999999999999999999999874
No 161
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.02 E-value=0.018 Score=54.25 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=23.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
+..++++|.||+|||++|+++++.+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999999864
No 162
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.97 E-value=0.018 Score=60.89 Aligned_cols=42 Identities=31% Similarity=0.308 Sum_probs=36.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh-cCCceEEEeccchh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYR 391 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~-~gi~t~v~n~d~yR 391 (753)
++.+|+++|.+|+||||++..|+..+.. .|.++-+++.|.+|
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 4568999999999999999999999974 78888888887664
No 163
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.97 E-value=0.0082 Score=59.44 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=32.7
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
..+.+|.++|.+||||||+++.|+..+...|...-.+..|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 457899999999999999999999998754444555555443
No 164
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.94 E-value=0.0061 Score=64.34 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=33.8
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcC--CceEEE-eccch
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG--HDTKHF-NVGKY 390 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~g--i~t~v~-n~d~y 390 (753)
..+|.+|.++|.+||||||+|+.|++.|...+ .++.++ ..|+|
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 45688999999999999999999999997543 334444 66665
No 165
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.93 E-value=0.024 Score=60.53 Aligned_cols=35 Identities=34% Similarity=0.368 Sum_probs=29.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
.|.+|+++|.+||||||||..|++.++ ..+++.|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP-----VELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC-----CcEEeccc
Confidence 467999999999999999999998854 45677764
No 166
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.87 E-value=0.036 Score=59.56 Aligned_cols=42 Identities=29% Similarity=0.426 Sum_probs=34.8
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
.++.+|.++|.+|+||||+.+.|+..+...+.+..+...|-+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 468899999999999999999999999877766666655443
No 167
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.86 E-value=0.06 Score=57.17 Aligned_cols=38 Identities=26% Similarity=0.175 Sum_probs=29.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc------CCceEEEec
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL------GHDTKHFNV 387 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~------gi~t~v~n~ 387 (753)
.+..++++|.||+||||+|+++++.+... +.....++.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 34578899999999999999999988543 444444554
No 168
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.85 E-value=0.0045 Score=62.70 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=24.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
+|.+|++.|.+||||||+++.|+++|.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 368999999999999999999999984
No 169
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.83 E-value=0.0021 Score=63.81 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=29.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
|++|+++|.|||||||+|+.|++.|+. .+++.|++-
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~-----~~~~~d~~~ 38 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSM-----IYVDTGAMY 38 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC-----EEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC-----ceecCChHH
Confidence 568999999999999999999998763 346666553
No 170
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.81 E-value=0.13 Score=51.53 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=30.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
.+++|+++|.|||||+|+|..|.+.++.. ...++..++.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~--~~~vv~msD~ 48 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGAD--VCAVLRLSGP 48 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTT--TEEEECTHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCC--CceEEEccHH
Confidence 57799999999999999999998876542 3556666654
No 171
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.80 E-value=0.018 Score=57.79 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=16.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHH-HHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLT-RYL 375 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~-r~L 375 (753)
+.+|.++|.+||||||+++.|+ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3588999999999999999999 765
No 172
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.80 E-value=0.019 Score=65.13 Aligned_cols=43 Identities=28% Similarity=0.379 Sum_probs=34.8
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
..+.+|.|+|.+||||||+.+.|+..+...+.+..+...|.+|
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 4578999999999999999999999987666666655555544
No 173
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.038 Score=59.13 Aligned_cols=145 Identities=12% Similarity=0.025 Sum_probs=74.9
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhc-------CCceEEEeccch-------hh---hhcCCCCCCCCCCCCCHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-------GHDTKHFNVGKY-------RR---LKHGVNQSADFFRADNPEG 411 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~-------gi~t~v~n~d~y-------Rr---~~~g~~~~~~~~~~~~~~~ 411 (753)
..|-.++++|.||+|||++++.+++.|... .+....+|.-.+ +. .+.|. .......
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~----~~~~~~~--- 115 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKE----NLCGDIS--- 115 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCC----C--CCCC---
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCC----CCCchHH---
Confidence 356688999999999999999999999632 233444553211 11 11111 0000111
Q ss_pred HHHHHHHHHHHHHHHHHHH---hcCCeEEEEeCCCCCHHHHHHHHHH----HcCCceEEEEEEEeCc---HHHHHHHHHH
Q 004453 412 MEARNEVAALAMEDMISWM---HEGGQVGIFDATNSSRKRRNMLMKM----AEGNCKIIFLETICND---RDIIERNIRL 481 (753)
Q Consensus 412 ~~~~~~vA~~~l~d~~~~l---~~~G~vVIlDATn~~~~~R~~l~~l----~~~~~~vifIE~~c~d---~~~i~rni~~ 481 (753)
...++.+.+.+ .....++++|-..... ..+.+..+ ...+.++++|=+-++. +..+..++..
T Consensus 116 --------~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~S 186 (318)
T 3te6_A 116 --------LEALNFYITNVPKAKKRKTLILIQNPENLL-SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSL 186 (318)
T ss_dssp --------HHHHHHHHHHSCGGGSCEEEEEEECCSSSC-CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHH
T ss_pred --------HHHHHHHHHHhhhccCCceEEEEecHHHhh-cchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhc
Confidence 11222222222 1123588888776543 23333333 2234456555433221 2345445544
Q ss_pred hhh-cCCCCCCCCChHHHHHHHHHHHhccc
Q 004453 482 KIQ-QSPDYAEEPDFEAGLQDFKNRLANYE 510 (753)
Q Consensus 482 r~~-~~pd~~~~~d~e~al~df~~Ri~~y~ 510 (753)
|.. ..-.|... +.++..+-...|++...
T Consensus 187 R~~~~~i~F~pY-t~~el~~Il~~Rl~~~~ 215 (318)
T 3te6_A 187 KAHFTEIKLNKV-DKNELQQMIITRLKSLL 215 (318)
T ss_dssp HTTEEEEECCCC-CHHHHHHHHHHHHHHHC
T ss_pred cCCceEEEeCCC-CHHHHHHHHHHHHHhhh
Confidence 421 12235555 78888888888988653
No 174
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.78 E-value=0.02 Score=63.27 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=28.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
+.+|+++|.+||||||||..|++.++. .+++.|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~-----~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNG-----EVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTE-----EEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCC-----eEeecCc
Confidence 468999999999999999999999763 4677664
No 175
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.76 E-value=0.0036 Score=64.30 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=25.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
+.+|.++|.+||||||+++.|++.|+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 4589999999999999999999998754
No 176
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.74 E-value=0.098 Score=55.58 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
.+.-|+|+|.||+|||++|+++++.+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34578899999999999999999986
No 177
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.70 E-value=0.072 Score=56.36 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=28.2
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
.+.-|+|+|.||+|||++|+++++.++ .....++..+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~---~~~~~v~~~~ 86 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN---STFFSVSSSD 86 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT---CEEEEEEHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC---CCEEEEchHH
Confidence 455799999999999999999999864 3444454433
No 178
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.69 E-value=0.0098 Score=58.79 Aligned_cols=41 Identities=20% Similarity=0.061 Sum_probs=34.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
+..++++|.||+||||+|+++++.+...+.....++..++.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 44788999999999999999999998777777778776553
No 179
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.66 E-value=0.014 Score=58.31 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.+.+|+++|.+|+|||||+++|.+.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 355899999999999999999998764
No 180
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.63 E-value=0.061 Score=58.04 Aligned_cols=119 Identities=12% Similarity=0.075 Sum_probs=67.2
Q ss_pred ccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh----hhhc----CCCCCCCCCCCCCHHHH
Q 004453 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR----RLKH----GVNQSADFFRADNPEGM 412 (753)
Q Consensus 341 ~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR----r~~~----g~~~~~~~~~~~~~~~~ 412 (753)
|.+++... ..-++++.|-||+||||+|..++..+...+.++-+|+...-. .++. +.+...-....-+....
T Consensus 37 D~~~gGl~-~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~ 115 (338)
T 4a1f_A 37 DNYTSGFN-KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQW 115 (338)
T ss_dssp HHHHCSBC-TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHH
T ss_pred HHHhcCCC-CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHH
Confidence 44444222 345899999999999999999998877677778778664211 1110 11000000000122222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcC-CceEEEEEEEe
Q 004453 413 EARNEVAALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEG-NCKIIFLETIC 469 (753)
Q Consensus 413 ~~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~-~~R~~l~~l-~~~-~~~vifIE~~c 469 (753)
..+... ...+.+ ..+.|.|..+.+. +-|..++.+ .++ ++.+++|+..-
T Consensus 116 ~~l~~a--------~~~l~~-~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLq 166 (338)
T 4a1f_A 116 ENLAKC--------FDHLSQ-KKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQ 166 (338)
T ss_dssp HHHHHH--------HHHHHH-SCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEE
T ss_pred HHHHHH--------HHHHhc-CCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechH
Confidence 221111 122322 4677777766555 467777777 566 89999998643
No 181
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.63 E-value=0.01 Score=57.89 Aligned_cols=35 Identities=20% Similarity=0.090 Sum_probs=31.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEe
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n 386 (753)
.+|+++|.+||||||++.+|.+.|...|.++-++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 48999999999999999999999988888877774
No 182
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.57 E-value=0.045 Score=57.64 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=31.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
..++++|.||+||||+|++|+..+...+.+...++..++
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 357889999999999999999998655666666765443
No 183
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.55 E-value=0.0052 Score=68.55 Aligned_cols=44 Identities=39% Similarity=0.578 Sum_probs=38.5
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
..|.+|+++|.||+||||++..|+.++...|.++-+++.|-+|-
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~ 140 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRP 140 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCc
Confidence 34679999999999999999999999988888998998886653
No 184
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.54 E-value=0.0042 Score=62.81 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=30.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr 392 (753)
.+.+|.++|.|||||||+++.|++.|+. .+++.|++.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~-----~~~d~d~~~~ 52 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGF-----TYLDTGAMYR 52 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCC-----EEEEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCC-----ceecCCCeeE
Confidence 4568999999999999999999998764 3466666544
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.53 E-value=0.084 Score=58.71 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=29.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhc--CCceEEEeccc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGK 389 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~--gi~t~v~n~d~ 389 (753)
+--++++|-||+||||+|++|+..+... +.+...++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 3468899999999999999999988654 55555565433
No 186
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.53 E-value=0.015 Score=62.44 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=35.3
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhh--cCCceEEEeccch
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 390 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~--~gi~t~v~n~d~y 390 (753)
...|++|.++|.+||||||+++.|...+.. .+..+.++..|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 567899999999999999999999998874 2445667777765
No 187
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.52 E-value=0.015 Score=59.08 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=35.2
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
.++.+++++|.+|+||||++..|+..|. .|.++-+++.|
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D 50 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLD 50 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 4678999999999999999999999999 88888888765
No 188
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.49 E-value=0.021 Score=55.11 Aligned_cols=26 Identities=38% Similarity=0.416 Sum_probs=23.0
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhhcC
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRWLG 379 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~~g 379 (753)
++++|.||+|||++|+++++.+...+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~ 66 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGEN 66 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccc
Confidence 89999999999999999999875443
No 189
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.49 E-value=0.013 Score=62.80 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=28.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
+.+|+++|.+||||||||..|++.++ ..+++.|.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN-----GEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT-----EEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc-----cceeecCc
Confidence 56899999999999999999998764 46777774
No 190
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.46 E-value=0.048 Score=55.00 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=27.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
.+.-|+++|.||+|||++|++|++.++ .....++.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~---~~~~~~~~ 72 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ---VPFLAMAG 72 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT---CCEEEEET
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC---CCEEEech
Confidence 345688999999999999999999864 34444544
No 191
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.44 E-value=0.057 Score=56.90 Aligned_cols=42 Identities=36% Similarity=0.366 Sum_probs=35.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
.+.+|.++|.+|+||||+++.|+..+...+.++.+++.|-.|
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 467888889999999999999999998778888777765443
No 192
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.40 E-value=0.053 Score=58.86 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=32.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
..++++.|-||+||||+|..++..+...+.++-.++.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4488999999999999999999888777778888877
No 193
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.027 Score=62.79 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
.|.=|+|.|.||+|||++|++|+..++.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3556899999999999999999998753
No 194
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.36 E-value=0.027 Score=53.09 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=23.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
+..++++|-||+|||++|+++++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345689999999999999999999854
No 195
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.28 E-value=0.047 Score=53.47 Aligned_cols=36 Identities=19% Similarity=0.102 Sum_probs=28.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
.-+++++|-||+||||+++.|+. ..+.++..++.+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 34899999999999999999997 3456666666543
No 196
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.25 E-value=0.034 Score=57.46 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=28.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
+.-++++|.||+|||++|++|++.++ .....++..++
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~---~~~~~i~~~~~ 86 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN---APFIKVEATKF 86 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT---CCEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC---CCEEEEcchhc
Confidence 44678899999999999999999874 34555655444
No 197
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.25 E-value=0.013 Score=57.17 Aligned_cols=39 Identities=21% Similarity=0.128 Sum_probs=32.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
..|+++|-||+||||+|++|+..+...+.....++..++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 578899999999999999999999877777766766544
No 198
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.21 E-value=0.09 Score=56.65 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=26.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
+.-|+|+|.||+|||++|++|++.++ .....++..+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~---~~~~~v~~~~ 119 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEAN---STFFSVSSSD 119 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHT---CEEEEEEHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC---CCEEEeeHHH
Confidence 34578889999999999999999874 3444454433
No 199
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.18 E-value=0.022 Score=61.53 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=26.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
+.-|+|+|.||+|||++|++|++.++ .....++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~---~~~~~~~~ 105 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD---IPIAISDA 105 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEG
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC---CCEEEecc
Confidence 34588999999999999999999873 34444443
No 200
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.07 E-value=0.025 Score=59.81 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=33.2
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHh--hcCCceEEEeccch
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKY 390 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~--~~gi~t~v~n~d~y 390 (753)
.++.+|.++|.+||||||+++.|+..+. .......+++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 4578999999999999999999999876 33445666666654
No 201
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.06 E-value=0.07 Score=54.78 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=22.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
+.-++++|-||+|||++|++|++.++
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34588999999999999999998864
No 202
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.05 E-value=0.015 Score=57.14 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=28.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
.+.+|.++|.+||||||+++.|+..++. ..-+++.|.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~ 41 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDH 41 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCc
Confidence 5679999999999999999999998762 233454443
No 203
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.02 E-value=0.045 Score=58.78 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
.++++.|.||+|||++|.+++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 46789999999999999999876
No 204
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.01 E-value=0.056 Score=54.84 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.-|+++|.||+||||+|++|+..++
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3488999999999999999998864
No 205
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.047 Score=60.90 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=27.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
.|.=|+|.|.||+|||.+|++|+..+++ ....++.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~---~f~~v~~ 248 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNA---TFLKLAA 248 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTC---EEEEEEG
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCC---CEEEEeh
Confidence 4667899999999999999999998654 3444444
No 206
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.99 E-value=0.02 Score=54.20 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=28.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
.++++|.+|+||||+++.|+..+...|.+...++.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~ 72 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA 72 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence 67789999999999999999988766665655654
No 207
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.95 E-value=0.074 Score=55.00 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
+.-|+++|.||+||||+|++|++.++
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999999864
No 208
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.94 E-value=0.15 Score=54.85 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=27.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
.+.-|+|+|.||+|||++|++|++.++ .....++..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~---~~~~~i~~~ 151 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG---ATFFSISAS 151 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT---CEEEEEEGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC---CeEEEEehH
Confidence 345789999999999999999998863 444455543
No 209
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.88 E-value=0.17 Score=53.81 Aligned_cols=35 Identities=29% Similarity=0.216 Sum_probs=28.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhc-CCceEEEec
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNV 387 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~-gi~t~v~n~ 387 (753)
.++++|.||+||||+++.+++.+... +.....++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~ 81 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING 81 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC
Confidence 78899999999999999999998655 455555653
No 210
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.88 E-value=0.022 Score=60.54 Aligned_cols=41 Identities=32% Similarity=0.465 Sum_probs=33.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
++-+|.++|.+||||||+++.|+..+...+.+..+...|-+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence 46699999999999999999999999876666666655443
No 211
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.054 Score=60.46 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=27.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
.|.=|+|.|.||+|||++|++|+..++. ....++.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~---~~~~v~~ 248 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGA---NFIFSPA 248 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTC---EEEEEEG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCC---CEEEEeh
Confidence 4567899999999999999999998653 3444444
No 212
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP: c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A* 2l3h_A 2l77_A 2l79_A
Probab=94.84 E-value=0.061 Score=57.38 Aligned_cols=65 Identities=22% Similarity=0.244 Sum_probs=48.1
Q ss_pred EEEecccccccccCCC--------c-CCCCCCCHHHHHHHHHHHHHHHHHhcCCC-------CCEEEEcCcHHHHHHHHH
Q 004453 562 ILLTRHGESRDNVRGR--------I-GGDTILSDAGEIYAKKLANFVEKRLKSER-------AASIWTSTLQRTILTASP 625 (753)
Q Consensus 562 IyLVRHGEs~~N~~~~--------~-~GD~pLTe~G~~QA~~La~~L~~~l~~~~-------~~~V~tSpl~RaiqTA~~ 625 (753)
.+|.|||.+.-..... + .|...||+.|.+|...+|+++.+++.+.- .-.+++|...||++||+.
T Consensus 7 ~vl~RHG~R~P~~~~~~~~~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~rY~~ll~~~~~~~~v~vrst~~~Rt~~SA~~ 86 (354)
T 1nd6_A 7 TLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMT 86 (354)
T ss_dssp EEEEECCCBCCSCCCTTCSCCGGGSTTCTTCBCHHHHHHHHHHHHHHHHHTTTTTCSSCCGGGEEEEEESCHHHHHHHHH
T ss_pred EEEecCCCCCCccccCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhccccCcCeEEEEECCchHHHHHHHH
Confidence 4678999885432100 0 12357999999999999999998865321 135889999999999998
Q ss_pred h
Q 004453 626 I 626 (753)
Q Consensus 626 i 626 (753)
+
T Consensus 87 f 87 (354)
T 1nd6_A 87 N 87 (354)
T ss_dssp H
T ss_pred H
Confidence 8
No 213
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.84 E-value=0.078 Score=54.32 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=24.5
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
..+.-++++|.||+|||++|+++++.++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3566899999999999999999999854
No 214
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.81 E-value=0.25 Score=54.76 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=66.8
Q ss_pred ccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhh-cCCceEEEeccc----hhhhh----cCCCCCCCCCCCCCHHH
Q 004453 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGK----YRRLK----HGVNQSADFFRADNPEG 411 (753)
Q Consensus 341 ~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~-~gi~t~v~n~d~----yRr~~----~g~~~~~~~~~~~~~~~ 411 (753)
|.++|... ..-+++++|-||+|||++|..++..... .+.++-.|+... +.+++ .+.....-....-+.+.
T Consensus 191 D~~lgGl~-~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~ 269 (444)
T 2q6t_A 191 DQLIGTLG-PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTDRD 269 (444)
T ss_dssp HHHHCCCC-TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGCCHHH
T ss_pred hhhcCCcC-CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCCCHHH
Confidence 44444333 3459999999999999999999988764 467777787642 22211 12221110011122332
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCceEEEEEE
Q 004453 412 MEARNEVAALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCKIIFLET 467 (753)
Q Consensus 412 ~~~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~-~~R~~l~~l-~~~~~~vifIE~ 467 (753)
...+...+ ..+. ...+.|.|....+. +.+..++.+ .++++.+++|+.
T Consensus 270 ~~~~~~a~--------~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 270 FSRLVDVA--------SRLS-EAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHHH--------HHHH-TSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHH--------HHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 22222221 1232 34567767655544 466777777 567899999984
No 215
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.80 E-value=0.082 Score=57.13 Aligned_cols=38 Identities=18% Similarity=0.118 Sum_probs=31.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
.-++++.|-||+||||+|.+++..+...+.++-.++.+
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 44889999999999999999998877667777777654
No 216
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.051 Score=60.05 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
|.=|+|.|.||+|||.+|++|+..++.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~ 208 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDC 208 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTC
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCC
Confidence 456899999999999999999998654
No 217
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.059 Score=59.99 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
.|.=|+|.|.||+|||.+|++|+..++.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~ 242 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSA 242 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTC
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCC
Confidence 3567999999999999999999998653
No 218
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.75 E-value=0.027 Score=59.68 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=34.0
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
..+.+|.++|..||||||+++.|+..+...+.+..+...|-+|
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 3578999999999999999999999987666566555544443
No 219
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.73 E-value=0.052 Score=60.94 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=24.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
.|.=|+|.|.||+|||++|++|+..++.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~ 269 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDA 269 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTC
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCC
Confidence 4567899999999999999999998654
No 220
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.71 E-value=0.12 Score=56.16 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=26.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
+.-|+|+|-||+|||++|++|++.++ .....++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~---~~~~~v~~ 181 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESN---ATFFNISA 181 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT---CEEEEECS
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc---CcEEEeeH
Confidence 45789999999999999999998854 34444443
No 221
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.66 E-value=0.032 Score=60.25 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=34.9
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
.+..+|+++|.||+||||++..|+..+...|.++-+++.|-
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 35678999999999999999999999987788888877653
No 222
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.59 E-value=0.17 Score=54.97 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=32.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
..-++.+.|-||+||||+|.+++..+...+.++..++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 356899999999999999999999887777677666654
No 223
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.57 E-value=0.031 Score=60.83 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=34.4
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
..+.+|.|+|..||||||+++.|+..+...+.+..+...|-+|
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 3578999999999999999999999987666666555544443
No 224
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.51 E-value=0.27 Score=52.03 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=31.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
..-+++++|-||+||||+|..++......+.++-.|+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 345999999999999999999998776666666667653
No 225
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.50 E-value=0.21 Score=54.41 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=30.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
-++++.|-||+||||+|..++..+...+.++-.|+.+
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3777799999999999999998877667777777765
No 226
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.31 E-value=0.19 Score=53.42 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=24.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
+..++++|.||+|||++|+++++.+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 357899999999999999999999863
No 227
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.28 E-value=0.042 Score=53.59 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=29.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
.+|+++|.+||||||+.+.|.+.|...+.+.-++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i 40 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEE
Confidence 4789999999999999999999988777666555
No 228
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.23 E-value=0.043 Score=57.01 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=31.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
..++++|-||+|||++|+.|++.+...+.....++...+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 478999999999999999999998765555666665443
No 229
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.22 E-value=0.19 Score=56.05 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=22.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-++|+|-||+||||+|+.|++.+.
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 689999999999999999999864
No 230
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.16 E-value=0.16 Score=53.87 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=29.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhc------CCceEEEeccc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL------GHDTKHFNVGK 389 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~------gi~t~v~n~d~ 389 (753)
.-+++++|-||+|||++|.+++...... +.++-.++...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3489999999999999999999765322 45666676654
No 231
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.11 E-value=0.059 Score=55.03 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=36.4
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
.+++-|++.|-||+||||+|-.++..+...|.++.+++.|.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 35678999999999999999999999998899998887764
No 232
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.08 E-value=0.029 Score=52.25 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=26.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
-|++.|-||+|||++|++|+......+.... ++.
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~ 59 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRE 59 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEE
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EEC
Confidence 3789999999999999999987654444444 544
No 233
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.05 E-value=0.1 Score=58.25 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
+.-|+|+|.||+||||+|++|++.++.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 345899999999999999999998753
No 234
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.04 E-value=0.12 Score=53.74 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=22.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhh
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
++++|.||+||||+|+.+++.+..
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC
Confidence 899999999999999999998753
No 235
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.04 E-value=0.12 Score=54.55 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=29.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc---CCceEEEec
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL---GHDTKHFNV 387 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~---gi~t~v~n~ 387 (753)
.+-.++++|.||+||||+++.+++.+... +.....++.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 34588899999999999999999988644 455555654
No 236
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.98 E-value=0.12 Score=50.14 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=33.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
.+.++.+-.|+||||+|..|+..|...|.++-+++.|.
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 45556688999999999999999999999999998873
No 237
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.97 E-value=0.04 Score=55.90 Aligned_cols=29 Identities=28% Similarity=0.267 Sum_probs=25.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
.+.+|.++|.+||||||+++.|+..++..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 46799999999999999999999987643
No 238
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase, phytate binding site, hydrolase; HET: IHP; 1.88A {Enterobacter cloacae} PDB: 1nt4_A*
Probab=93.93 E-value=0.16 Score=56.02 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=48.3
Q ss_pred EEEeccccccc-cc--------C-C----CcCCCCCCCHHHHHHHHHHHHHHHHHhc--C-------C--CCCEEEEcCc
Q 004453 562 ILLTRHGESRD-NV--------R-G----RIGGDTILSDAGEIYAKKLANFVEKRLK--S-------E--RAASIWTSTL 616 (753)
Q Consensus 562 IyLVRHGEs~~-N~--------~-~----~~~GD~pLTe~G~~QA~~La~~L~~~l~--~-------~--~~~~V~tSpl 616 (753)
++|.|||.+.- .. . . ...+...||+.|.+|...+|+++.+++. + . ..-.++++..
T Consensus 11 ~vl~RHG~R~P~~~~~~~~~~~~~~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~rY~~~~ll~~~~~~~~~~v~vrst~~ 90 (398)
T 3ntl_A 11 LIMSRANLRAPLANNGSVLEQSTPKQWPEWEVPGGQLTTKGGVLEVYMGHYMREWLAQQGMVKTGECPAADSVYAYANSL 90 (398)
T ss_dssp EEEEECCSBCCCGGGHHHHHHTCSSCCCCCSSCTTSBCHHHHHHHHHHHHHHHHHHHHTTSSCTTSCCCTTSEEEEECSS
T ss_pred EEEecCCCCCCCCCCcccccCCCCcccccCCCCccccchHHHHHHHHHHHHHHHHHhhcCCCccccCCCcCeEEEEECCc
Confidence 56789998643 11 0 1 1123678999999999999999998872 1 1 2236889999
Q ss_pred HHHHHHHHHh
Q 004453 617 QRTILTASPI 626 (753)
Q Consensus 617 ~RaiqTA~~i 626 (753)
.||++||+.+
T Consensus 91 ~Rt~~SA~~f 100 (398)
T 3ntl_A 91 QRTVATAQFF 100 (398)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 9999999998
No 239
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.92 E-value=0.24 Score=55.16 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=63.0
Q ss_pred ccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhh-cCCceEEEeccc----hhhhh----cCCCCCCCCCCCCCHHH
Q 004453 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGK----YRRLK----HGVNQSADFFRADNPEG 411 (753)
Q Consensus 341 ~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~-~gi~t~v~n~d~----yRr~~----~g~~~~~~~~~~~~~~~ 411 (753)
|.+++... ..-++++.|-||+||||+|..++..+.. .|.++-+|+... +++++ .+.....-....-..+.
T Consensus 194 D~~~gGl~-~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~ 272 (454)
T 2r6a_A 194 DRMTSGFQ-RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPED 272 (454)
T ss_dssp HHHHSSBC-TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHH
T ss_pred HhhcCCCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHH
Confidence 34443333 3458999999999999999999988764 466777776542 21111 11110000000012221
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCceEEEEEE
Q 004453 412 MEARNEVAALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCKIIFLET 467 (753)
Q Consensus 412 ~~~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~-~~R~~l~~l-~~~~~~vifIE~ 467 (753)
.....+ .+..+. .....|.|....+. +.+..++.+ .+++..+++|+.
T Consensus 273 ~~~~~~--------a~~~l~-~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~ 321 (454)
T 2r6a_A 273 WGKLTM--------AMGSLS-NAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDY 321 (454)
T ss_dssp HHHHHH--------HHHHHH-SSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred HHHHHH--------HHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 221111 122232 34566666544444 456667777 567889999873
No 240
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.73 E-value=0.21 Score=55.67 Aligned_cols=113 Identities=17% Similarity=0.150 Sum_probs=64.6
Q ss_pred ccccCCCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc----hhhhhc----CCCCC----CC--CCCC
Q 004453 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK----YRRLKH----GVNQS----AD--FFRA 406 (753)
Q Consensus 341 ~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~----yRr~~~----g~~~~----~~--~~~~ 406 (753)
|.+++.. ...-++++.|-||+|||++|..++......|.++-+|+... +.+++. +.+.. .. +...
T Consensus 188 D~~lgGl-~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~ 266 (444)
T 3bgw_A 188 DRMTYGY-KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASE 266 (444)
T ss_dssp HHHHSSB-CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHHHHHSCCCHHHHHHTGGGTCCS
T ss_pred HhhcCCC-CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcccCCCCHH
Confidence 4444422 24569999999999999999999988766677787786642 211111 11100 00 1101
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCce--EEEEEE
Q 004453 407 DNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCK--IIFLET 467 (753)
Q Consensus 407 ~~~~~~~~~~~vA~~~l~d~~~~l~~~G~vVIlDATn~~~-~~R~~l~~l-~~~~~~--vifIE~ 467 (753)
.. . ++ .+....+. ...+.|.|....+. +-|..++.+ .++++. +++|+.
T Consensus 267 -~~---~---~l-----~~a~~~l~-~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 267 -DW---G---KL-----SMAIGEIS-NSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp -CH---H---HH-----HHHHHHHH-TSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred -HH---H---HH-----HHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 00 1 11 11122233 34666767655544 467777777 567888 999985
No 241
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP; 2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A* 1dkm_A 1dkn_A 1dko_A 1dkl_A
Probab=93.73 E-value=0.13 Score=56.58 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=47.7
Q ss_pred EEEecccccccccCC------------Cc-CCCCCCCHHHHHHHHHHHHHHHHHhcC---C--------CCCEEEEcCcH
Q 004453 562 ILLTRHGESRDNVRG------------RI-GGDTILSDAGEIYAKKLANFVEKRLKS---E--------RAASIWTSTLQ 617 (753)
Q Consensus 562 IyLVRHGEs~~N~~~------------~~-~GD~pLTe~G~~QA~~La~~L~~~l~~---~--------~~~~V~tSpl~ 617 (753)
.+|.|||.+.-.... .+ .+...||..|.+|...+|+++++++.. . ..-.|+++...
T Consensus 12 ~vl~RHG~R~P~~~~~~~~~~~~~~w~~w~~~~g~LT~~G~~~~~~lG~~lr~ry~~~~ll~~~~~p~~~~v~v~st~~~ 91 (410)
T 1dkq_A 12 VIVSRAGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIADVDE 91 (410)
T ss_dssp EEEEECCSBCCSCCCHHHHHTCSSCCCCCSSCTTCBCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCCTTTEEEEECSSH
T ss_pred EEEecCCcCCCCCCCccccccCcccccCCCCCCCccchHHHHHHHHHHHHHHHHHHhcCCCccccCCCcceEEEEeCCcH
Confidence 467899987543211 01 125579999999999999999988631 0 12358999999
Q ss_pred HHHHHHHHh
Q 004453 618 RTILTASPI 626 (753)
Q Consensus 618 RaiqTA~~i 626 (753)
||++||+.+
T Consensus 92 RT~~SA~~~ 100 (410)
T 1dkq_A 92 RTRKTGEAF 100 (410)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999988
No 242
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.72 E-value=0.24 Score=53.10 Aligned_cols=40 Identities=15% Similarity=0.035 Sum_probs=30.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh------cCCceEEEeccc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW------LGHDTKHFNVGK 389 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~------~gi~t~v~n~d~ 389 (753)
..-+++++|-||+|||++|..|+..... .+.++..++...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4569999999999999999999976322 355666666543
No 243
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.69 E-value=0.061 Score=52.80 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=30.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
-+++++|.||+||||+++.|+..+...+.++..++.+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 4788899999999999999997776556666666654
No 244
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.66 E-value=0.046 Score=57.88 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=33.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh-hcCCceEEEeccch
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKY 390 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~-~~gi~t~v~n~d~y 390 (753)
+.-++|+|-||+|||++|++|+..+. ..+.++..++..++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 34678899999999999999999998 88888877776554
No 245
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.53 E-value=0.07 Score=55.80 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=34.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
...+|.++|-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4455555599999999999999999999999999998873
No 246
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.52 E-value=0.061 Score=52.59 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=27.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
..+++++|.||+||||++.++++.+...+.++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 34889999999999999987777766566666554
No 247
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.45 E-value=0.054 Score=53.95 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=27.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh-----hcC-CceEEEeccch
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR-----WLG-HDTKHFNVGKY 390 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~-----~~g-i~t~v~n~d~y 390 (753)
+++++++|.||||||++|..+...+. ..| ....+.+.++.
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL 50 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGL 50 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTB
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCc
Confidence 56889999999999999988755442 345 44445554433
No 248
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.43 E-value=0.11 Score=54.35 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=23.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.|-++++.|.||+|||++|++|++.++
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 445789999999999999999998863
No 249
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.43 E-value=0.045 Score=53.29 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=23.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
.+++++|.||+||||+++.+++.+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 48899999999999999999998764
No 250
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella tularensis subsp} PDB: 4e3w_A 2glc_A 2glb_A 2gla_A 3it0_A* 3it1_A* 3it2_A 2p36_A*
Probab=93.42 E-value=0.2 Score=53.86 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=48.3
Q ss_pred cEEEecccccccccC--C----CcCCCCCCCHHHHHHHHHHHHHHHHHh---cCC-------CCCEEEEcCcHHHHHHHH
Q 004453 561 PILLTRHGESRDNVR--G----RIGGDTILSDAGEIYAKKLANFVEKRL---KSE-------RAASIWTSTLQRTILTAS 624 (753)
Q Consensus 561 ~IyLVRHGEs~~N~~--~----~~~GD~pLTe~G~~QA~~La~~L~~~l---~~~-------~~~~V~tSpl~RaiqTA~ 624 (753)
-+.+.|||.+.-... . .-.|...||+.|.+|...+|+++.+++ .+. .--.++++...||++||+
T Consensus 11 v~v~~RHG~R~p~~~~p~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~~Yv~~~~~l~~~~~~~~v~~rst~~~Rt~~Sa~ 90 (342)
T 3it3_A 11 VSMITRHGDRAPFANIENANYSWGTELSELTPIGMNQEYNLGLQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQ 90 (342)
T ss_dssp EEEEEECCCBCCSSCCTTCCCCCSSCTTCBCHHHHHHHHHHHHHHHHHHTTTSCSSCSSCCTTSEEEEECSSHHHHHHHH
T ss_pred EEEEEeCCCCCCcccCCCCcccCCCChHhhhHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEECCChHHHHHHH
Confidence 356789998753211 0 112246799999999999999999887 221 123678999999999999
Q ss_pred Hh
Q 004453 625 PI 626 (753)
Q Consensus 625 ~i 626 (753)
.+
T Consensus 91 ~~ 92 (342)
T 3it3_A 91 SL 92 (342)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 251
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.42 E-value=0.053 Score=55.32 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=30.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
-|+++|-||+|||++|++|++.+...+.....++...+
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 47789999999999999999987655556666765443
No 252
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.38 E-value=0.3 Score=53.79 Aligned_cols=39 Identities=13% Similarity=-0.057 Sum_probs=27.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhh------cCCceEEEeccc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRW------LGHDTKHFNVGK 389 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~------~gi~t~v~n~d~ 389 (753)
.-++.++|-||+|||||+..|+-.... .+..+..|+..+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 448999999999999999988644321 234455666543
No 253
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.33 E-value=0.056 Score=58.77 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
...|+++|.||+||||+++.|++.|++.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3468899999999999999999998753
No 254
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.28 E-value=0.056 Score=57.54 Aligned_cols=29 Identities=31% Similarity=0.227 Sum_probs=26.1
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
..+.+|.++|.+||||||+++.|+..+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 46789999999999999999999998864
No 255
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.17 E-value=0.026 Score=51.92 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
-|+++|.+|+||||+..+|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998754
No 256
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.15 E-value=0.044 Score=57.52 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
+.-|+++|.||+|||++|++|+..++
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC
Confidence 45788999999999999999998864
No 257
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.12 E-value=0.11 Score=53.80 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=22.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhh
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
++++|.||+|||++|+.+++.+..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC
Confidence 899999999999999999998753
No 258
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.06 E-value=0.26 Score=50.00 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=21.6
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
..++-|+++|.||+||||+..+|...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999888643
No 259
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.02 E-value=0.092 Score=52.22 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=30.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
.-+++++|-||+||||+|.+++..+...+.++..++.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 34889999999999999999987776566677777654
No 260
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.01 E-value=0.049 Score=56.65 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHHh
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
++++|.||+||||+++.|+..++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC
Confidence 89999999999999999998754
No 261
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A
Probab=92.98 E-value=0.15 Score=44.90 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=42.5
Q ss_pred eEEEEEEEEecccCCCceEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEE
Q 004453 30 QFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLL 95 (753)
Q Consensus 30 ~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~ 95 (753)
..-|+| +-+| ....+.|+|+=. +|+ +++|.+.+ +.|++.+.+++. ..+|||++
T Consensus 10 ~~~v~F-~wap---~a~~V~v~GdFn---~W~---~~~m~~~~-g~w~~~v~l~~G--~~~YKf~V 62 (96)
T 1z0n_A 10 ARPTVF-RWTG---GGKEVYLSGSFN---NWS---KLPMTRSQ-NNFVAILDLPEG--EHQYKFFV 62 (96)
T ss_dssp CEEEEE-EECS---CCSCEEEEEGGG---TTC---CEECEEET-TEEEEEEEECSE--EEEEEEEE
T ss_pred ceEEEE-EECC---CCcEEEEEEEeC---CCc---cccCEECC-CEEEEEEEccCC--CEEEEEEE
Confidence 356788 7777 367899999876 898 68999864 799999988764 46999998
No 262
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.98 E-value=0.12 Score=55.75 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=33.0
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
.....+|.++|.||+||||+-.+|...+...+.+.-++..|
T Consensus 71 ~~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~d 111 (349)
T 2www_A 71 KPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD 111 (349)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeec
Confidence 34467999999999999999999999887666666666543
No 263
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.95 E-value=0.051 Score=55.07 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHHh
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
++++|.||+||||+++.|+..+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998864
No 264
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.94 E-value=0.48 Score=53.30 Aligned_cols=39 Identities=5% Similarity=-0.161 Sum_probs=32.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc-CCceEEEecc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVG 388 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~-gi~t~v~n~d 388 (753)
..-++++.|-||+|||++|.+++..+... |.++-.|+.+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 44588999999999999999999887654 7778777764
No 265
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.81 E-value=0.12 Score=50.75 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=26.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
+...|+++|.+|+||||+..+|...+... .+.-++
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i 63 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAM 63 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEE
Confidence 35689999999999999999999886533 334344
No 266
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.81 E-value=0.05 Score=58.47 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=26.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
+.-|+|+|.||+|||++|++|++.++ .....++.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~---~~~~~~~~ 84 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD---VPFTMADA 84 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEech
Confidence 44688899999999999999999874 34444444
No 267
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.80 E-value=0.2 Score=56.46 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=26.2
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
|+|+|.||+|||++|++|+..++ .....++..++
T Consensus 52 vLL~GppGtGKT~Laraia~~~~---~~f~~is~~~~ 85 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEAN---VPFFHISGSDF 85 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT---CCEEEEEGGGT
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CCeeeCCHHHH
Confidence 88999999999999999998764 44444554333
No 268
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.77 E-value=0.049 Score=53.60 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.+++++|.+|+||||+.+.|.+.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4789999999999999999998764
No 269
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.75 E-value=0.062 Score=52.30 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=22.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.+.++|.+||||||+.+.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999885
No 270
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.70 E-value=0.12 Score=55.66 Aligned_cols=41 Identities=22% Similarity=0.127 Sum_probs=37.5
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
..+.++++.|-.|.||||+|..|+..|...|.++-+++.|-
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45789999999999999999999999999999999999875
No 271
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella pneumoniae} PDB: 2wni_A 2wu0_A
Probab=92.69 E-value=0.19 Score=55.38 Aligned_cols=65 Identities=22% Similarity=0.180 Sum_probs=47.3
Q ss_pred EEEecccccccccC--------------CCcCCCCCCCHHHHHHHHHHHHHHHHHhc--CC--------CCCEEEEcCcH
Q 004453 562 ILLTRHGESRDNVR--------------GRIGGDTILSDAGEIYAKKLANFVEKRLK--SE--------RAASIWTSTLQ 617 (753)
Q Consensus 562 IyLVRHGEs~~N~~--------------~~~~GD~pLTe~G~~QA~~La~~L~~~l~--~~--------~~~~V~tSpl~ 617 (753)
.+|.|||.+.-... ..-.+...||+.|.+|...+|+++.+++. +. ..-.+++|...
T Consensus 20 ~~~~RHG~R~P~~~~~~~l~~~~~~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~rY~~~~ll~~~~~~~~~v~~rst~~~ 99 (418)
T 2wnh_A 20 VELSRHGIRPPTAGNREAIEAATGRPWTEWTTHDGELTGHGYAAVVNKGREEGQHYRQLGLLQAGCPTAESIYVRASPLQ 99 (418)
T ss_dssp EEEEECCCCCCCHHHHHHHHHHHTSCCCCCSSCTTSCCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCTTTEEEEECSSH
T ss_pred EEEEeCCCCCCCCCcchhHHhcCccccccCCCCcCccChhHHHHHHHHHHHHHHHHHhcCCcccCCCCCCeEEEEECCCH
Confidence 45779998754220 01112567999999999999999988764 21 12358899999
Q ss_pred HHHHHHHHh
Q 004453 618 RTILTASPI 626 (753)
Q Consensus 618 RaiqTA~~i 626 (753)
||++||+.+
T Consensus 100 Rt~~Sa~~f 108 (418)
T 2wnh_A 100 RTRATAQAL 108 (418)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999988
No 272
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.63 E-value=0.15 Score=54.09 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=36.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
+.++++.|-.|.||||+|..|+..|...|.++-+++.|-
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 689999999999999999999999999999999998875
No 273
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.46 E-value=0.12 Score=55.28 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=33.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
+..+|.++|.||+||||+...|+..+...+.+.-+++.|-
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 4678889999999999999999999887777777776543
No 274
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.45 E-value=0.066 Score=51.99 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=27.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
+|.++|.+||||||+++.|.+.+...+.+.-.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I 36 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVV 36 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEE
Confidence 788999999999999999999988766554444
No 275
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.40 E-value=0.13 Score=52.17 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=32.5
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEe
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n 386 (753)
.+..+++++|-||+||||++.+++..+...|.++.++.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 34679999999999999999999988887788888874
No 276
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.32 E-value=0.2 Score=47.61 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.9
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
.+++-|+++|.+|+|||||..+|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4568899999999999999998873
No 277
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.32 E-value=0.042 Score=56.02 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhh
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
|+++|.||+|||++|++|++.+..
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 789999999999999999998754
No 278
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.26 E-value=0.065 Score=54.07 Aligned_cols=25 Identities=16% Similarity=0.472 Sum_probs=22.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-.+++.|.||+||||+|.+|++.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999874
No 279
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.22 E-value=0.068 Score=56.96 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-.++++|.||+||||+|+.|+..++
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4688999999999999999999874
No 280
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.22 E-value=0.75 Score=47.43 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=25.2
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
..-+++++|.+||||||+.+.|...+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 34589999999999999999999988643
No 281
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*
Probab=92.20 E-value=0.09 Score=47.06 Aligned_cols=76 Identities=11% Similarity=0.080 Sum_probs=53.2
Q ss_pred CceEEEEEEEEecccCCCceEEEecCCCccCCCCccccccCcccCCCce-EEEEecCCCCCceeEEEEEecCCCCCceee
Q 004453 28 GGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMW-ELSFVVPPNHETLDFKFLLKPKYGNGPCIV 106 (753)
Q Consensus 28 ~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W-~~~l~~~~~~~~leyKf~~~~~~~~~~~~w 106 (753)
+.+.-|-.+ + =-..-.||.- +..|+|.+..+++|.+..+.-| ..+++++.-. .|||+| . +. .-.|
T Consensus 9 g~~vTvyY~--s--g~~~~ylHy~---~~~g~Wt~vpgv~M~~~~~~Gw~~~TI~~~~~~-~l~~~F--~--dG--~~~W 74 (102)
T 2c3v_A 9 ATDITIYYK--T--GWTHPHIHYS---LNQGAWTTLPGVPLTKSEXEGXVKVTIEAEEGS-QLRAAF--N--NG--SGQW 74 (102)
T ss_dssp CCSEEEEEE--C--CCSSCEEEEE---ETTCCBCCTTCEECEECSSTTEEEEEECCCTTC-EEEEEE--E--CS--SSCE
T ss_pred CCEEEEEEc--C--CCCcEEEEEe---CCCCCcccCCCcCccccccCCceEEEEecCCCc-eEEEEE--e--CC--Cccc
Confidence 455555555 1 1223356655 4558999999999999766666 7999998654 799999 2 22 3479
Q ss_pred ccCCCcccccC
Q 004453 107 EEGPNRLLTGG 117 (753)
Q Consensus 107 E~g~NR~l~~~ 117 (753)
+++.+|-+..+
T Consensus 75 DNN~g~Ny~~~ 85 (102)
T 2c3v_A 75 DNNQGRDYDFS 85 (102)
T ss_dssp ECGGGTCEEEE
T ss_pred ccCCCcceEEC
Confidence 99888877653
No 282
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.20 E-value=0.92 Score=48.54 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=23.9
Q ss_pred ccEEEEE--EccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVL--VGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvm--vGLPGSGKSTlAr~L~r~L~~ 377 (753)
.+-++++ +|.||+||||+++++++.+..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 3457777 999999999999999988764
No 283
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.19 E-value=0.25 Score=53.45 Aligned_cols=139 Identities=9% Similarity=0.041 Sum_probs=65.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcC-CCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG-VNQSADF-FRADNPEGMEARNEVAALAMEDMISW 429 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g-~~~~~~~-~~~~~~~~~~~~~~vA~~~l~d~~~~ 429 (753)
.+|+++|-+||||||+.+.|.+.+.... ....++ +.+..... ....-.+ +........ .......+.+.+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~-g~I~ie--~~~e~~~~~~~~~v~~v~~q~~~~~~-----~~~~t~~~~i~~ 247 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQ-RLITIE--DVPELFLPDHPNHVHLFYPSEAKEEE-----NAPVTAATLLRS 247 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTS-CEEEEE--SSSCCCCTTCSSEEEEECC---------------CCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCc-eEEEEC--CccccCccccCCEEEEeecCcccccc-----ccccCHHHHHHH
Confidence 4889999999999999999998765322 122222 12211000 0000011 101100000 000011111222
Q ss_pred -HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 004453 430 -MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 501 (753)
Q Consensus 430 -l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~d 501 (753)
+.......|+++.-. .+..+.+..+ ..|+...+.+++.++......|+...........+. +.+.....
T Consensus 248 ~l~~~pd~~l~~e~r~-~~~~~~l~~l-~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~~~~~~~-~~~~i~~~ 317 (361)
T 2gza_A 248 CLRMKPTRILLAELRG-GEAYDFINVA-ASGHGGSITSCHAGSCELTFERLALMVLQNRQGRQL-PYEIIRRL 317 (361)
T ss_dssp HTTSCCSEEEESCCCS-THHHHHHHHH-HTTCCSCEEEEECSSHHHHHHHHHHHHTTSTTGGGS-CHHHHHHH
T ss_pred HHhcCCCEEEEcCchH-HHHHHHHHHH-hcCCCeEEEEECCCCHHHHHHHHHHHHhccccccCC-CHHHHHHH
Confidence 223445667777554 3333444444 334555566778888777778887665433222333 44444333
No 284
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.18 E-value=0.11 Score=62.22 Aligned_cols=36 Identities=25% Similarity=0.182 Sum_probs=28.4
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
..|.=|+|.|.||+|||++|++|+..++ .....++.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg---~~~~~v~~ 271 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETG---AFFFLING 271 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTT---CEEEEEEH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC---CeEEEEEh
Confidence 4567899999999999999999998754 44445544
No 285
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.13 E-value=0.074 Score=54.84 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHHh
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
|+++|.||+||||+++.|+..+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 88999999999999999998864
No 286
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.12 E-value=0.13 Score=57.38 Aligned_cols=38 Identities=0% Similarity=-0.005 Sum_probs=26.0
Q ss_pred CCeEEEEeCCCC-CHHHHHHHHHHHcCCceEEEEEEEeC
Q 004453 433 GGQVGIFDATNS-SRKRRNMLMKMAEGNCKIIFLETICN 470 (753)
Q Consensus 433 ~G~vVIlDATn~-~~~~R~~l~~l~~~~~~vifIE~~c~ 470 (753)
.+.+.++|++.. +......+..+.+.+.+++++--.|+
T Consensus 104 d~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D 142 (456)
T 4dcu_A 104 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLD 142 (456)
T ss_dssp SEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECcc
Confidence 477889999875 44555555555667788888776775
No 287
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.06 E-value=0.39 Score=45.66 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=20.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
...-|+++|.+|+||||+..+|..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999998864
No 288
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.06 E-value=0.32 Score=49.90 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=54.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh----hcCCceEE----EeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR----WLGHDTKH----FNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAAL 421 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~----~~gi~t~v----~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~ 421 (753)
+++-|+++|.||+|||||..+|...-. +.|...+. +..+.+.=.+........+ .....+ +.+++.
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~-~~~~~~-----e~v~~~ 77 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSL-GYSSID-----EKIARD 77 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSC-CSSSHH-----HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCcc-CCCCHH-----HHHHHH
Confidence 456799999999999999999874221 22322221 1111110001111111222 222211 122222
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEe
Q 004453 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETIC 469 (753)
Q Consensus 422 ~l~d~~~~l~~~G~vVIlDATn~~~~~R~~l~~l~~~~~~vifIE~~c 469 (753)
.+. .-.-.+.+.|+|+++..+. ...+.++.+.+.+++++=..|
T Consensus 78 ~~~----~~~~d~ii~V~D~t~~~~~-~~~~~~l~~~~~pvilv~NK~ 120 (258)
T 3a1s_A 78 YLL----KGDADLVILVADSVNPEQS-LYLLLEILEMEKKVILAMTAI 120 (258)
T ss_dssp HHH----HSCCSEEEEEEETTSCHHH-HHHHHHHHTTTCCEEEEEECH
T ss_pred HHh----hcCCCEEEEEeCCCchhhH-HHHHHHHHhcCCCEEEEEECc
Confidence 111 0012477899999997443 334445566778877765555
No 289
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.05 E-value=0.14 Score=54.71 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=36.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
.+.++++.|-.|.||||+|..|+..|...|.++-+++.|-.
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 35688899999999999999999999999999999988743
No 290
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.99 E-value=0.14 Score=53.11 Aligned_cols=38 Identities=11% Similarity=-0.030 Sum_probs=30.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhc-CCceEEEecc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVG 388 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~-gi~t~v~n~d 388 (753)
.-+++++|-||+||||+++.|+..+... |.++.+++.+
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 3489999999999999999999887654 5566566543
No 291
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.97 E-value=0.26 Score=59.00 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
|.=|+|.|.||+|||.+|++|+..++.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCC
Confidence 445789999999999999999988653
No 292
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.96 E-value=0.15 Score=50.85 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=27.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh-hcCCceEEEecc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVG 388 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~-~~gi~t~v~n~d 388 (753)
.-++.++|.+||||||+++.|+...- ..+.....++.+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 45888999999999999999985332 344445555443
No 293
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=91.95 E-value=0.078 Score=59.09 Aligned_cols=36 Identities=25% Similarity=0.156 Sum_probs=27.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
+.-++|.|.||+|||++|++|++.++.. .....++.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~-~~~~~~~~ 98 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSK-VPFCPMVG 98 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTT-SCEEEEEG
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCC-ceEEEEeH
Confidence 3458899999999999999999997632 34444544
No 294
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.88 E-value=0.45 Score=50.11 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=22.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
..-+++++|-||+|||++|.+++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999999875
No 295
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=91.79 E-value=0.094 Score=55.72 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=33.0
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
..+++|+|-|.-||||+|..+.|..+|...|+++..+
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~ 120 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVAL 120 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEEC
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEe
Confidence 3589999999999999999999999999888776665
No 296
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.66 E-value=0.2 Score=49.51 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=32.2
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEe
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n 386 (753)
...+++++|-+|+||||.+..+++.+...+.++.++.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3579999999999999999999988877788888874
No 297
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.58 E-value=0.17 Score=54.36 Aligned_cols=38 Identities=21% Similarity=0.107 Sum_probs=35.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
+.++++.|-.|.||||+|..|+..|...|.++-+++.|
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 56788999999999999999999999999999999987
No 298
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.56 E-value=0.11 Score=58.74 Aligned_cols=36 Identities=33% Similarity=0.355 Sum_probs=28.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
+..++++|.||+||||+|++|++.+ +.....++..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~ 112 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASD 112 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCC
Confidence 3588999999999999999999987 44455555544
No 299
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=91.54 E-value=0.23 Score=56.35 Aligned_cols=110 Identities=12% Similarity=0.091 Sum_probs=65.7
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~ 428 (753)
..+++|||-|.-||||++..+.|...|.-.|+++..+..-..+... ..|+ ... ..
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~------~~yl-----------~R~--------~~ 95 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELE------RPPQ-----------WRF--------WR 95 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHT------SCTT-----------HHH--------HH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhcc------CChh-----------hhH--------HH
Confidence 4689999999999999999999999999888877666332332211 1121 111 11
Q ss_pred HHhcCCeEEEEeCCCCCH------------H-HHHHHHH-------HHcCCceEEEEEEEeCcHHHHHHHHHHhhh
Q 004453 429 WMHEGGQVGIFDATNSSR------------K-RRNMLMK-------MAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (753)
Q Consensus 429 ~l~~~G~vVIlDATn~~~------------~-~R~~l~~-------l~~~~~~vifIE~~c~d~~~i~rni~~r~~ 484 (753)
.+=..|.++|+|-..... + ....+.. +...|+.++-+-+.. +.+.-++|+..|..
T Consensus 96 ~lP~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~i-s~eeq~kRl~~R~~ 170 (500)
T 3czp_A 96 RLPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHL-SKKQLKERLKALEK 170 (500)
T ss_dssp HCCCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC-CHHHHHHCC-----
T ss_pred hCCCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEC-CHHHHHHHHHHHhc
Confidence 133579999999764322 2 1111221 145677665555555 56777788877743
No 300
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.46 E-value=0.11 Score=53.49 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
++|.++|.+||||||+|+.|...++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g 26 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYS 26 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4899999999999999999988744
No 301
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.42 E-value=0.085 Score=52.92 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
...|+++|.+|+||||+|.+|++++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 56899999999999999999998753
No 302
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.42 E-value=0.095 Score=55.27 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-|+++|.||+|||++|+++++.++
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECcCCCCHHHHHHHHHHHhC
Confidence 479999999999999999998864
No 303
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.39 E-value=1.1 Score=48.28 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=23.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
..-++.++|-|||||||+++.|+..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999999876
No 304
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.31 E-value=0.14 Score=50.32 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=25.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceE
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~ 383 (753)
+|.++|.+|+||||+.+.|+..+...|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~ 33 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCCEEEc
Confidence 5789999999999999999998863344333
No 305
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.26 E-value=0.24 Score=55.90 Aligned_cols=37 Identities=27% Similarity=0.238 Sum_probs=28.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
+.-|+|+|-||+|||++|++|+..+ +.....++..++
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l 274 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 274 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHh
Confidence 3458899999999999999999885 444555655444
No 306
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.22 E-value=0.32 Score=49.92 Aligned_cols=24 Identities=38% Similarity=0.391 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
..-|+++|.||+||||+..+|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999754
No 307
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.20 E-value=0.47 Score=53.74 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=28.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
.-++.++|.||+||||+++.++..+...|-+...+..
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4588999999999999999999877655555544443
No 308
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.12 E-value=0.22 Score=48.93 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=23.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
....|+++|.+|+||||+..+|...+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 4568888899999999999999987643
No 309
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.11 E-value=0.12 Score=50.97 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=23.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.-++.++|.+||||||+.+.|+..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44889999999999999999998764
No 310
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.07 E-value=1.4 Score=41.36 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=20.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
...-|+++|.+|+|||||..+|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999888643
No 311
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.04 E-value=0.094 Score=52.40 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
+.+++++|.+||||||+.+.|+..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3478999999999999999999876
No 312
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.03 E-value=0.25 Score=49.17 Aligned_cols=41 Identities=10% Similarity=-0.006 Sum_probs=35.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc-CCceEEEeccch
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKY 390 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~-gi~t~v~n~d~y 390 (753)
.+.+.++.+-.|.||||+|..|+..|... |.++-+++.|-.
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 35666777889999999999999999988 999999988644
No 313
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=90.98 E-value=0.29 Score=50.60 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
++-|+++|.||+|||||..+|...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999998753
No 314
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.97 E-value=0.17 Score=47.92 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.6
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHH
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
+.++.-|+++|.+|+|||||.++|..
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34567899999999999999999975
No 315
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.94 E-value=0.12 Score=54.37 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=21.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHh
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
++++|.||+||||+|+.|++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999999985
No 316
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.92 E-value=0.21 Score=49.64 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=27.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH-hhcCCceEEEec
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYL-RWLGHDTKHFNV 387 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L-~~~gi~t~v~n~ 387 (753)
.-+++++|-||+|||++|.+++... ...+..+..++.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4589999999999999999987553 334555555544
No 317
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.91 E-value=0.13 Score=50.56 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=23.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
..-++.++|.+||||||+++.|+..+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356999999999999999999997543
No 318
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.89 E-value=0.09 Score=52.81 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.2
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
.++.+|.+.|..||||||+++.|+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45689999999999999999999865
No 319
>1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle, glycoprotein phosphohistidine, hydrolase; HET: NEP NAG; 1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB: 1skb_A* 1sk8_A* 1ska_A* 1sk9_A*
Probab=90.79 E-value=0.49 Score=52.38 Aligned_cols=46 Identities=20% Similarity=0.089 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcC---CCCCEEEEcCcHHHHHHHHHh
Q 004453 581 DTILSDAGEIYAKKLANFVEKRLKS---ERAASIWTSTLQRTILTASPI 626 (753)
Q Consensus 581 D~pLTe~G~~QA~~La~~L~~~l~~---~~~~~V~tSpl~RaiqTA~~i 626 (753)
...||+.|++|...+|+++.+++.. ...-.|++|...||++||+.+
T Consensus 101 ~G~LT~~G~~q~~~lG~~lr~rY~~ll~~~~v~vrST~~~Rti~Sa~~f 149 (442)
T 1qwo_A 101 ADDLTPFGEQQLVNSGIKFYQRYKALARSVVPFIRASGSDRVIASGEKF 149 (442)
T ss_dssp SSSBCHHHHHHHHHHHHHHHHHTHHHHTTCCCEEEEESCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhccCceEEEeCCccHHHHHHHHH
Confidence 5679999999999999999887532 123469999999999999988
No 320
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.75 E-value=0.25 Score=52.97 Aligned_cols=38 Identities=29% Similarity=0.447 Sum_probs=31.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
...++.++|.||+||||+.+.|...+...+.+..++..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~ 91 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV 91 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEE
Confidence 45799999999999999999999888765666666544
No 321
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.75 E-value=0.53 Score=55.64 Aligned_cols=35 Identities=26% Similarity=0.515 Sum_probs=28.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
-++|+|.||+|||++|++|++.+ +.....++..+|
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~ 524 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEY 524 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGC
T ss_pred EEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhh
Confidence 68999999999999999999987 345556666555
No 322
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.68 E-value=0.14 Score=50.84 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=31.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
|.+.|-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 334899999999999999999999999999998864
No 323
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=90.61 E-value=0.082 Score=55.73 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=21.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHHh
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
|+|+|-||+|||++|++|++.+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 88999999999999999999875
No 324
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.57 E-value=0.39 Score=51.98 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=24.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
-+|+++|.+||||||+.+.|...+...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 399999999999999999999988754
No 325
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.55 E-value=0.2 Score=51.04 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=34.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
.+.+.++.+-.|+||||+|..|+..|. .|.++-+++.|-.
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 455666679999999999999999999 8999999988743
No 326
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=90.52 E-value=0.25 Score=49.04 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=33.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
+.+.++.+-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 456666788999999999999999998899999998864
No 327
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.50 E-value=0.46 Score=47.48 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=22.0
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
..++-|+++|.+|+|||||..+|...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 45678999999999999999988753
No 328
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=90.44 E-value=0.55 Score=49.43 Aligned_cols=71 Identities=13% Similarity=0.255 Sum_probs=56.5
Q ss_pred CceEEEEEEEEecccCCCceEEEecCCCccCCCCccccccCcccC-CCceEEEEecCCCCCceeEEEEEecCCCCCceee
Q 004453 28 GGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRES-ASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIV 106 (753)
Q Consensus 28 ~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~-~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~w 106 (753)
...-.|+|+..+| ....+.|+|+=. +|+ +.++|.... -+.|++++.+|+. ..+|||++-. .|
T Consensus 167 ~~k~~v~f~~~~~---~~~~V~v~GsF~---~W~--~~~~l~k~~~~g~~~~~~~L~~G--~y~YkFiVDG-------~w 229 (294)
T 3nme_A 167 LKRKTVTLTLKDK---GFSRVEISGLDI---GWG--QRIPLTLGKGTGFWILKRELPEG--QFEYKYIIDG-------EW 229 (294)
T ss_dssp CCCEEEEEEEECS---SCSCEEEEETTT---EEE--EEEECEECTTTCEEEEEEEECSE--EEEEEEEETT-------EE
T ss_pred cccccceeeeccC---CCCEEEEEEecc---CCC--CcccceEcCCCCEEEEEEECCCc--eEEEEEEECC-------EE
Confidence 4456799999999 567799999766 788 779999964 8999999999974 5899999752 38
Q ss_pred ccCCCcccc
Q 004453 107 EEGPNRLLT 115 (753)
Q Consensus 107 E~g~NR~l~ 115 (753)
-..++-...
T Consensus 230 ~~d~~~~~~ 238 (294)
T 3nme_A 230 THNEAEPFI 238 (294)
T ss_dssp ECCTTSCEE
T ss_pred eeCCCCCee
Confidence 887776544
No 329
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.44 E-value=0.14 Score=54.36 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=22.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhh
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
++++|.||+||||+|+.+++.+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 789999999999999999999853
No 330
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.40 E-value=0.093 Score=55.30 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-++|+|-||+|||++|++|++.++
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 478899999999999999999875
No 331
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=90.40 E-value=0.3 Score=49.82 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=35.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
.+.+.++.|-.|.||||+|..|+..|...|.++-+++.|-.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~ 58 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFL 58 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 45677778999999999999999999989999999988754
No 332
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.39 E-value=0.21 Score=59.12 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=34.1
Q ss_pred CccE-EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 349 HRHL-AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 349 ~~~~-lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
.+|. .++|+|.||+|||++|++|++.+...+.....++..+|
T Consensus 518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~ 560 (758)
T 3pxi_A 518 KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEY 560 (758)
T ss_dssp TSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhc
Confidence 3444 68999999999999999999998665667777877666
No 333
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=90.35 E-value=0.25 Score=53.42 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=36.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh--hcCCceEEEeccc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGK 389 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~--~~gi~t~v~n~d~ 389 (753)
.+.++++.|-.|.||||+|..|+..|. ..|.++-+++.|-
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 356888999999999999999999999 8999999998875
No 334
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.33 E-value=0.085 Score=49.01 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=20.0
Q ss_pred EEEEccCCCCHHHHHHHHHHHHh
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
|+++|-||+|||++|++|+....
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTTS
T ss_pred EEEECCCCccHHHHHHHHHHhCC
Confidence 77899999999999999987643
No 335
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.29 E-value=0.15 Score=55.69 Aligned_cols=26 Identities=27% Similarity=0.149 Sum_probs=22.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
+.+|+++|.||+||||+++.|+..++
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45889999999999999999998753
No 336
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=90.28 E-value=0.16 Score=53.47 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=29.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
.-|+++|-||+|||++|++|+......+.....+|...+
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 357789999999999999999987655555555665443
No 337
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.16 E-value=0.12 Score=53.80 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
..++++|-||+|||++|+++++.++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688899999999999999998864
No 338
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.09 E-value=0.14 Score=57.05 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
+.-|+|+|.||+|||++|++|+..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999986
No 339
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.06 E-value=0.29 Score=50.60 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=32.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
+|.+.|-.|+||||+|..|+..|...|.++-+++.|-.
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 44447999999999999999999988999999988743
No 340
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.02 E-value=0.3 Score=49.64 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=32.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
+|.+.|-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 3444799999999999999999998899999998874
No 341
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=89.95 E-value=0.46 Score=48.76 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=19.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
-|+++|.||+|||||..+|...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999998643
No 342
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.94 E-value=0.6 Score=60.03 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=34.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
..-+|++.|-||+||||+|.+++..+...+.++-.|+...
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ee 770 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 770 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccc
Confidence 4559999999999999999999998877777888887653
No 343
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.91 E-value=0.32 Score=48.10 Aligned_cols=38 Identities=29% Similarity=0.243 Sum_probs=32.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
.+.++.+-.|+||||+|..|+..|...| ++-+++.|-.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q 39 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPN 39 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCC
Confidence 4556678999999999999999999889 9988887643
No 344
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=89.89 E-value=0.3 Score=49.13 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=34.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
+.+.+..+-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 456677788999999999999999999999999998875
No 345
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=89.86 E-value=0.43 Score=50.21 Aligned_cols=110 Identities=15% Similarity=0.225 Sum_probs=67.5
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~ 428 (753)
..+++|||-|.-|+||..+.+.|...|.-.|+++.-|..-..+.. ...|+ .. ...
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~------~~~yl-----------wR--------~~~ 127 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEK------SHDFL-----------WR--------IEK 127 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHH------TSCTT-----------HH--------HHT
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChhhh------cCCHH-----------HH--------HHH
Confidence 469999999999999999999999999888877765522111110 01111 01 111
Q ss_pred HHhcCCeEEEEeCCCCCHH-------------HHHH---HHHH----HcCCceEEEEEEEeCcHHHHHHHHHHhhh
Q 004453 429 WMHEGGQVGIFDATNSSRK-------------RRNM---LMKM----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (753)
Q Consensus 429 ~l~~~G~vVIlDATn~~~~-------------~R~~---l~~l----~~~~~~vifIE~~c~d~~~i~rni~~r~~ 484 (753)
.|=..|.++|+|-.-..+. .... +..+ ...|+.++=+-+.. +.+.-++|+..|..
T Consensus 128 ~lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhI-skeEQ~kR~~~R~~ 202 (289)
T 3rhf_A 128 QVPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNI-SKDEQKKRLIARLD 202 (289)
T ss_dssp TCCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEC-CHHHHHHHHHHHHH
T ss_pred hCCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEC-CHHHHHHHHHHHhc
Confidence 1335699999998765431 1112 2222 46776654444444 56777788887755
No 346
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.84 E-value=0.16 Score=53.62 Aligned_cols=26 Identities=19% Similarity=0.177 Sum_probs=22.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.|. ++++|.||+||||+++.|++.+.
T Consensus 36 ~~~-~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 36 LPH-LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CCC-EEEECSTTSSHHHHHHTHHHHHS
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHHHc
Confidence 344 88999999999999999999763
No 347
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=89.73 E-value=0.36 Score=48.86 Aligned_cols=39 Identities=31% Similarity=0.297 Sum_probs=34.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
+.+.++.+-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 456677889999999999999999998899999998774
No 348
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.66 E-value=0.18 Score=50.10 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
.-+++++|.||+||||+++.|+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 458999999999999999999975
No 349
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.66 E-value=0.16 Score=53.03 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=24.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
++-.|++.|.||+|||++|.+|+..+...
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l~ 131 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPFY 131 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 34579999999999999999999875443
No 350
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=89.63 E-value=0.41 Score=50.07 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=35.8
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
..+.+.++.+-+|.||||+|..|+..|...|.++-+++.|-.
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 346677777889999999999999999988999999988643
No 351
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.57 E-value=0.19 Score=53.30 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=23.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
-.++++|.||+||||+|+.+++.+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999999864
No 352
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=89.54 E-value=0.43 Score=56.17 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=53.3
Q ss_pred CCCceEEEEEEEEecccCCCceEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEE
Q 004453 26 HAGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLL 95 (753)
Q Consensus 26 ~~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~ 95 (753)
+..+..-|+|.+.+|. ....+.|+|+-. +|++. +.+|... -+.|++++++|+. ..+|||++
T Consensus 13 ~~~~~~~v~f~~~~~~--~~~~v~~~G~Fn---~w~~~-~~~~~~~-~~~~~~~~~L~~g--~~~y~f~v 73 (696)
T 4aee_A 13 GRKGRYIVKFTRHWPQ--YAKNIYLIGEFT---SLYPG-FVKLRKI-EEQGIVYLKLWPG--EYGYGFQI 73 (696)
T ss_dssp TEEEEEEEEEEEECCT--TCSCEEEEETTS---CSSTT-SCBCEEE-TTEEEEEEEECSE--EEEEEEEE
T ss_pred CCCCcEEEEEEEECCC--CCcEEEEEEecC---CCCCC-CcceEec-CCeEEEEEEcCCc--eEEEEEEE
Confidence 3557788999999988 567899999998 99985 6899988 8999999999997 57999999
No 353
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.51 E-value=0.3 Score=52.77 Aligned_cols=38 Identities=18% Similarity=0.054 Sum_probs=35.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh--hcCCceEEEecc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVG 388 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~--~~gi~t~v~n~d 388 (753)
+.++++.|-.|.||||+|..|+..|. ..|.++-+++.|
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 46888999999999999999999999 899999999887
No 354
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.51 E-value=1.2 Score=58.25 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=38.7
Q ss_pred cccccC-CCCCccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 340 ADQMLG-PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 340 ~~~~~~-~~~~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
.|.+.+ ..-.++..|+++|.||+|||+||.+++......|.++..++..
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 355554 2223566999999999999999999998877788888888765
No 355
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=89.49 E-value=0.38 Score=49.80 Aligned_cols=40 Identities=20% Similarity=0.141 Sum_probs=33.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
+.+.+..+.+|.||||+|..|+..|...|.++-+++.|-.
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4444555679999999999999999999999999988743
No 356
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=89.46 E-value=0.44 Score=53.98 Aligned_cols=110 Identities=14% Similarity=0.059 Sum_probs=69.6
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccchhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yRr~~~g~~~~~~~~~~~~~~~~~~~~~vA~~~l~d~~~ 428 (753)
..+++|||-|.-||||++..+.|...|.-.|+++..+..-..+... ..|+ ... ..
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~~------~~yl-----------~R~--------~~ 352 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEERA------QPYL-----------WRF--------WR 352 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHHT------SCTT-----------HHH--------HT
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhhc------chHH-----------HHH--------HH
Confidence 4689999999999999999999999999888887666433332211 1122 011 11
Q ss_pred HHhcCCeEEEEeCCCCCHH-------------HHHHHHH---H----HcCCceEEEEEEEeCcHHHHHHHHHHhhh
Q 004453 429 WMHEGGQVGIFDATNSSRK-------------RRNMLMK---M----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (753)
Q Consensus 429 ~l~~~G~vVIlDATn~~~~-------------~R~~l~~---l----~~~~~~vifIE~~c~d~~~i~rni~~r~~ 484 (753)
-+=..|.++|+|-.....- ....+.. + ...|+.++-+-+.. +.+.-++|+..|..
T Consensus 353 ~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~i-s~eeQ~~R~~~R~~ 427 (500)
T 3czp_A 353 HIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAI-DKQTQMERFKEREK 427 (500)
T ss_dssp TCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEC-CHHHHHHHHHHHHH
T ss_pred hCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEEC-CHHHHHHHHHHHhc
Confidence 1234699999998765421 1112222 2 45566665444455 56777888888754
No 357
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=89.41 E-value=0.19 Score=57.53 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
+..++|+|.||+||||+|+.|+..+.
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 44889999999999999999999975
No 358
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.39 E-value=0.21 Score=53.13 Aligned_cols=25 Identities=24% Similarity=0.567 Sum_probs=22.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
.-++.++|.+|||||||++.|.+.+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3488999999999999999999987
No 359
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.26 E-value=0.27 Score=46.97 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=23.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
..-++.++|-.|+||||+.+.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34589999999999999999999987
No 360
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=89.17 E-value=0.3 Score=56.07 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=35.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
+.+++++|-+|.||||+|..|+..|...|.++-+++.|-
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 457789999999999999999999999999999998883
No 361
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=89.06 E-value=0.3 Score=55.39 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=25.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
|+|+|.||+||||+|++|+..+. .....++..
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~ 98 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR---VPFITASGS 98 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehh
Confidence 89999999999999999998864 334445543
No 362
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.05 E-value=0.22 Score=48.55 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=22.9
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHHH
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
.....-|+++|.+|+||||+..+|....
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456689999999999999999988653
No 363
>3k4q_A 3-phytase A; PHYA, 3-phosphotase, MYO-inositol hexakis phosphate phosphohydrolase, 37288-11-2, MYO-inositol hexakis sulfate, 62-1; HET: IHS NAG; 2.20A {Aspergillus niger} SCOP: c.60.1.2 PDB: 3k4p_A* 1ihp_A
Probab=89.01 E-value=0.73 Score=51.36 Aligned_cols=46 Identities=20% Similarity=0.078 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcC---CCCCEEEEcCcHHHHHHHHHh
Q 004453 581 DTILSDAGEIYAKKLANFVEKRLKS---ERAASIWTSTLQRTILTASPI 626 (753)
Q Consensus 581 D~pLTe~G~~QA~~La~~L~~~l~~---~~~~~V~tSpl~RaiqTA~~i 626 (753)
...||+.|++|...+|.++.+++.. .....+++|...||++||+.+
T Consensus 102 ~g~LT~~G~~~~~~lG~~~r~rY~~l~~~~~~~~rst~~~Rt~~Sa~~f 150 (444)
T 3k4q_A 102 ADDLTPFGEQELVNSGIKFYQRYESLTRNIVPFIRSSGSSRVIASGKKF 150 (444)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHTHHHHTTCCCEEEEEESHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhHHhccCCceEEEeCCccHHHHHHHHH
Confidence 6689999999999999999877431 222468999999999999988
No 364
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=88.91 E-value=0.22 Score=51.39 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=21.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHHh
Q 004453 354 IVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
++++|.||+|||++|+.+++.+.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHhc
Confidence 89999999999999999999874
No 365
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.89 E-value=0.29 Score=46.07 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=22.3
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHH
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
...++=|+++|.+|+|||||..+|..
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhc
Confidence 34567899999999999999998875
No 366
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=88.80 E-value=0.52 Score=49.53 Aligned_cols=39 Identities=15% Similarity=0.283 Sum_probs=32.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
+.+.|+..-+|.||||+|..|+..|...|.++-+++.|-
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 444444456999999999999999998899999998764
No 367
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=88.70 E-value=1.5 Score=46.12 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.5
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
..+-.|.++|.||+|||||..+|..
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3566899999999999999988864
No 368
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=88.47 E-value=1.6 Score=43.30 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=53.2
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc---------hhhhhcCCC---CCCCCCCCCCHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK---------YRRLKHGVN---QSADFFRADNPEGMEARN 416 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~---------yRr~~~g~~---~~~~~~~~~~~~~~~~~~ 416 (753)
.+..+++++| +|.||||.|-.++-+.-..|.++.++...+ .-+.+ +.. ....|.-... ..+.-.
T Consensus 27 ~~g~i~v~tG-~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~gf~~~~~--~~~~~~ 102 (196)
T 1g5t_A 27 ERGIIIVFTG-NGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH-GVEFQVMATGFTWETQ--NREADT 102 (196)
T ss_dssp CCCCEEEEES-SSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG-TCEEEECCTTCCCCGG--GHHHHH
T ss_pred cCceEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC-CcEEEEcccccccCCC--CcHHHH
Confidence 3566777777 999999999999888777888998874322 11111 100 0113321111 111223
Q ss_pred HHHHHHHHHHHHHHhcC-CeEEEEeCCCC
Q 004453 417 EVAALAMEDMISWMHEG-GQVGIFDATNS 444 (753)
Q Consensus 417 ~vA~~~l~d~~~~l~~~-G~vVIlDATn~ 444 (753)
..+...++.+.+.+.+. -..+|+|-.|.
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~ 131 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTY 131 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCc
Confidence 44455666666666543 56899998865
No 369
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=88.36 E-value=1.8 Score=45.37 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r 373 (753)
..|+++|.||+|||||..+|..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999998874
No 370
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.34 E-value=0.28 Score=50.57 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=22.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.-+++++|-||+||||++..|+..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 44899999999999999999997664
No 371
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.32 E-value=0.55 Score=47.36 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=32.9
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEe
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n 386 (753)
....+.+++|-+|+||||.+..++..+...+.++.+|.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34579999999999999999999988887888888874
No 372
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=88.29 E-value=0.4 Score=49.56 Aligned_cols=41 Identities=10% Similarity=-0.034 Sum_probs=34.0
Q ss_pred cEEEEEE--ccCCCCHHHHHHHHHHHHhhcCCceEEEeccchh
Q 004453 351 HLAIVLV--GLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (753)
Q Consensus 351 ~~lIvmv--GLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~yR 391 (753)
+.+.++. +-.|+||||+|..|+..|...|.++-+++.|-..
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 4444555 6999999999999999999899999999887553
No 373
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=88.28 E-value=0.23 Score=55.53 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=22.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
-++|+|.||+|||++|+.|++.+..
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4589999999999999999999853
No 374
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.25 E-value=0.3 Score=46.35 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.5
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
..++-|+++|.+|+|||||..+|...
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcC
Confidence 35678999999999999999999754
No 375
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.20 E-value=0.93 Score=54.28 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.+.-|+|+|.||+||||+|++|+..++
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 345689999999999999999998754
No 376
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.20 E-value=0.38 Score=44.42 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
+++-|+++|.+|+|||||..+|..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 467899999999999999998864
No 377
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.17 E-value=0.31 Score=46.36 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.4
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
...+-|+++|.+|+|||||..+|..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 4567899999999999999988864
No 378
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=88.14 E-value=0.47 Score=51.30 Aligned_cols=39 Identities=15% Similarity=0.079 Sum_probs=33.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d 388 (753)
.+.+.++.|-.|+||||+|..|+..|...|.++-+++.|
T Consensus 143 ~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 143 SSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 455556667999999999999999999889999999987
No 379
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.11 E-value=0.3 Score=46.18 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
...-|+++|.||+|||||..+|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999754
No 380
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.11 E-value=0.34 Score=45.01 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=22.2
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
...+-|+++|.+|+|||||..+|...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 35678999999999999999998754
No 381
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=88.02 E-value=0.58 Score=51.65 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r 373 (753)
..|+++|.|++|||||..+|..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~ 25 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAG 25 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEE
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999988853
No 382
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.90 E-value=0.32 Score=45.43 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
+.-|+++|.||+|||||.++|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999999974
No 383
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.74 E-value=0.37 Score=44.91 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.5
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
.++.-|+++|.+|+||||+..+|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3566899999999999999998864
No 384
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.68 E-value=0.36 Score=44.31 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
.++=|+++|.+|+||||+..+|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999998753
No 385
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.67 E-value=0.36 Score=43.90 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
++-|+++|.+|+||||+..+|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999988754
No 386
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=87.67 E-value=0.42 Score=55.02 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=28.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEE
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~ 385 (753)
-+++++|-||+||||+++.|.+.+...+.+..+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3788899999999999999999988777655544
No 387
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=87.55 E-value=0.25 Score=48.52 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
+|+++|-+|||||++|.+|+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3788999999999999999854
No 388
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.54 E-value=0.34 Score=46.68 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
..+.|+++|.+|+|||||.+.|....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 45789999999999999999998653
No 389
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.53 E-value=0.36 Score=45.79 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=21.8
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
...+=|+++|.+|+|||||..+|...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 45677899999999999999998753
No 390
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=87.38 E-value=0.21 Score=53.70 Aligned_cols=29 Identities=21% Similarity=0.085 Sum_probs=26.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
+++.|++-|.-|+||||+++.|+++|...
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~~ 34 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAASGG 34 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 46899999999999999999999999863
No 391
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=87.27 E-value=0.96 Score=44.02 Aligned_cols=37 Identities=27% Similarity=0.324 Sum_probs=25.2
Q ss_pred CeEEEEeCCCC-CHHHHHHHHHHHcCCceEEEEEEEeC
Q 004453 434 GQVGIFDATNS-SRKRRNMLMKMAEGNCKIIFLETICN 470 (753)
Q Consensus 434 G~vVIlDATn~-~~~~R~~l~~l~~~~~~vifIE~~c~ 470 (753)
+.+.|+|++.. ....+..+..+.+.+.+++++=..|+
T Consensus 118 ~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D 155 (223)
T 4dhe_A 118 GMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCD 155 (223)
T ss_dssp EEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGG
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 47899999975 44555555556556777777766664
No 392
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.26 E-value=0.39 Score=52.19 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=25.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
..-+|+++|.+||||||+.+.|.+.+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 34589999999999999999999988754
No 393
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.25 E-value=2.4 Score=55.35 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=34.2
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
.+-.++++|-||+||||+|.++...-...|.++..++..+
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee 1119 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1119 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccc
Confidence 4558999999999999999999887777788898887764
No 394
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=87.24 E-value=0.35 Score=49.13 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=33.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
+.+.++.+-.|.||||+|..|+..|...|.++-+++.|-.
T Consensus 7 ~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4555556889999999999999999988999999988753
No 395
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=87.23 E-value=1.2 Score=47.40 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=23.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
.+++++|-+||||||+.+.|...+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 48999999999999999999987654
No 396
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.22 E-value=0.28 Score=48.14 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
..-|+++|-+|+||||+|.+|.++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 458999999999999999999874
No 397
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.20 E-value=0.4 Score=43.74 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
++=|+++|.||+|||||..+|..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 56799999999999999988874
No 398
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.12 E-value=0.38 Score=45.71 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.3
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
..+.-|+++|.+|+||||+..+|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998754
No 399
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.06 E-value=0.39 Score=44.19 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=20.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
.++-|+++|.+|+||||+..+|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 356789999999999999988874
No 400
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=86.93 E-value=0.48 Score=52.66 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=25.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCC
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi 380 (753)
.+++.|.||+||||++..+.++|...+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 8899999999999999999999987665
No 401
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=86.92 E-value=0.64 Score=53.30 Aligned_cols=41 Identities=29% Similarity=0.293 Sum_probs=36.5
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
..+.++++.|.+|.||||+|..|+..|...|.++-+++.|-
T Consensus 325 ~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp 365 (589)
T 1ihu_A 325 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP 365 (589)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred cCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCC
Confidence 35678899999999999999999999999999999988763
No 402
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=86.79 E-value=0.18 Score=57.10 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-|+|+|.||+|||++|++|+..+.
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred eeEeecCchHHHHHHHHHHHHHHh
Confidence 578899999999999999998764
No 403
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.73 E-value=0.49 Score=45.21 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=22.7
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
....+=|+++|.+|+|||||..++...
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 345788999999999999999887653
No 404
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=86.64 E-value=0.51 Score=48.83 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=33.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
+.+.+..+-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 345555688999999999999999999999999998876
No 405
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=86.52 E-value=0.45 Score=44.07 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=20.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
.++-|+++|.||+|||||..+|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 356799999999999999988863
No 406
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=86.45 E-value=0.52 Score=43.86 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
.++=|+++|.+|+|||||..+|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 467799999999999999999864
No 407
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.31 E-value=2.5 Score=54.44 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=33.2
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccc
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~ 389 (753)
..-++++.|-||+||||+|.+++......+..+-.|+...
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~ 421 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 421 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 4559999999999999999999888776777777777653
No 408
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.23 E-value=0.41 Score=57.56 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=31.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
--++++|-||+|||++|++|++.+...+.....++...+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 627 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc
Confidence 378899999999999999999998655556666766554
No 409
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.21 E-value=0.49 Score=43.20 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
++=|+++|.+|+|||||..+|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 467899999999999999888743
No 410
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=86.16 E-value=0.47 Score=44.56 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
.++=|+++|.+|+|||||..+|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4677999999999999999998743
No 411
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=86.04 E-value=0.64 Score=43.83 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.2
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
..++=|+++|.+|+|||||..+|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34677999999999999999988754
No 412
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=86.03 E-value=0.4 Score=44.27 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.7
Q ss_pred EEEEEEccCCCCHHHHHHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLT 372 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~ 372 (753)
+=|+++|.||+|||||..+|.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999885
No 413
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=86.00 E-value=0.78 Score=45.03 Aligned_cols=35 Identities=20% Similarity=0.116 Sum_probs=29.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEe
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n 386 (753)
.+.+..+-+|+||||+|..|+..|...|.++-+++
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 45555567999999999999999998898887774
No 414
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=86.00 E-value=0.5 Score=43.97 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=21.5
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
...+-|+++|.+|+|||||..+|...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34677999999999999999888753
No 415
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=85.92 E-value=0.38 Score=44.25 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=18.0
Q ss_pred EEEEEccCCCCHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLT 372 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~ 372 (753)
=|+++|.||+|||||..+|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999998885
No 416
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=85.87 E-value=0.52 Score=43.17 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
++=|+++|.+|+|||||..+|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45689999999999999988875
No 417
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=85.87 E-value=0.29 Score=47.38 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
....|+++|.+|+|||||.+.|...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999888643
No 418
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=85.86 E-value=0.46 Score=50.47 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=24.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
+-.++++|.||+|||++|+.+++.|..
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 448999999999999999999999863
No 419
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=85.84 E-value=0.37 Score=57.10 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=22.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-++|+|.||+|||++|+.|++.+.
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999999984
No 420
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=85.71 E-value=3.9 Score=44.44 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=23.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
..+-|+++|.+++|||||..+|...+.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~ 36 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAA 36 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhh
Confidence 456799999999999999999987543
No 421
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=85.69 E-value=0.46 Score=44.92 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=20.9
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
.+++-|+++|.+|+|||||..+|..
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999988874
No 422
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=85.63 E-value=0.36 Score=51.91 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
..+.++|-+|||||||++.|+..+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999998864
No 423
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=85.57 E-value=0.5 Score=45.55 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
.+-|+++|.+|+|||||.+.|...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999864
No 424
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=85.51 E-value=0.67 Score=44.15 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=22.1
Q ss_pred CCccEEEEEEccCCCCHHHHHHHHHH
Q 004453 348 EHRHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
....+=|+++|.+|+|||||..+|..
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhc
Confidence 34567899999999999999988874
No 425
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=85.51 E-value=0.36 Score=45.96 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r 373 (753)
+=|+++|.+|+|||||.+.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999875
No 426
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=85.51 E-value=0.57 Score=43.49 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
...-|+++|.+|+|||||..+|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4678999999999999999988754
No 427
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=85.51 E-value=0.54 Score=43.88 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=21.9
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
..++=|+++|.+|+|||||..+|...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 45677999999999999999888753
No 428
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=85.63 E-value=0.16 Score=49.09 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=21.2
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
.+.+=|+++|.+|+|||||..+|..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4567899999999999999987763
No 429
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=85.40 E-value=0.71 Score=49.96 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=33.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEecc-chhh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG-KYRR 392 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d-~yRr 392 (753)
-++++|.+|+||||+++.|...+...+.+..+++.+ +|+.
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 77 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYKE 77 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCSHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCHHH
Confidence 467889999999999999998887788888888764 5554
No 430
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=85.28 E-value=0.51 Score=54.49 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=23.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcC
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLG 379 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~g 379 (753)
.++++|-||+||||+|+.|++.+....
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 788999999999999999999876543
No 431
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.26 E-value=0.53 Score=44.75 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
+.+++|-.||||||+..+|.-.|.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 889999999999999999987664
No 432
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=85.25 E-value=0.38 Score=52.60 Aligned_cols=31 Identities=23% Similarity=0.092 Sum_probs=24.2
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHhhcC
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~L~~~g 379 (753)
.+.+.|++-|.-|+||||+++.|+++|...+
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g 77 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDD 77 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 3567899999999999999999999998665
No 433
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=85.16 E-value=0.68 Score=43.94 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.2
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
...+=|+++|.+|+|||||..+|...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 34678999999999999999988753
No 434
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=85.15 E-value=2.8 Score=47.71 Aligned_cols=38 Identities=8% Similarity=0.106 Sum_probs=27.8
Q ss_pred CCeEEEEeCCCC-CHHHHHHHHHHHcCCceEEEEEEEeC
Q 004453 433 GGQVGIFDATNS-SRKRRNMLMKMAEGNCKIIFLETICN 470 (753)
Q Consensus 433 ~G~vVIlDATn~-~~~~R~~l~~l~~~~~~vifIE~~c~ 470 (753)
.+-++|+|++.. ....+..|..+...+.+++++--.|+
T Consensus 107 D~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~D 145 (528)
T 3tr5_A 107 DSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMD 145 (528)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 488999999986 45667777777777777766655554
No 435
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=85.14 E-value=0.62 Score=43.70 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.2
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
...+-|+++|.+|+|||||..+|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35678999999999999999988754
No 436
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=85.07 E-value=0.55 Score=43.02 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
.++-|+++|.+|+|||||..+|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 456799999999999999998875
No 437
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=85.04 E-value=0.59 Score=43.01 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
..+=|+++|.+|+|||||..+|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999888743
No 438
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.92 E-value=0.57 Score=42.94 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
++=|+++|.+|+||||+..+|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999888743
No 439
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=84.87 E-value=0.57 Score=43.51 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
..+=|+++|.+|+|||||..+|..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 456799999999999999998864
No 440
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.87 E-value=0.47 Score=44.44 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.1
Q ss_pred CccEEEEEEccCCCCHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLT 372 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~ 372 (753)
..++-|+++|.+|+|||||..+|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 457889999999999999998775
No 441
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.76 E-value=0.69 Score=43.94 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.3
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
..+-|+++|.+|+|||||..+|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 467899999999999999998875
No 442
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=84.64 E-value=0.44 Score=47.93 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=20.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
-++.++|..||||||+.+.|+..+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 488999999999999999998554
No 443
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=84.62 E-value=0.63 Score=42.70 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
++=|+++|.+|+||||+..+|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45689999999999999988874
No 444
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=84.61 E-value=2.5 Score=46.60 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
.++-|+++|.||+|||||.+.|...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999998754
No 445
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.59 E-value=0.76 Score=50.84 Aligned_cols=28 Identities=25% Similarity=0.155 Sum_probs=24.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhc
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~ 378 (753)
.-+|+++|.+||||||+.+.|...+...
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 4589999999999999999999988644
No 446
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=84.59 E-value=0.44 Score=48.35 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
.-++.++|..||||||+.+.|+..+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3489999999999999999998654
No 447
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=84.58 E-value=0.64 Score=44.25 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.9
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
.+++-|+++|.+|+|||||..+|..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 4567899999999999999998874
No 448
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.56 E-value=0.61 Score=43.44 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.0
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
..++-|+++|.+|+|||||..+|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 35678999999999999999888643
No 449
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=84.54 E-value=0.56 Score=47.62 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.4
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
..++-|+|+|.||+||||+..+|..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhC
Confidence 3578899999999999999988864
No 450
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=84.51 E-value=1 Score=49.59 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=24.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceE
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~ 383 (753)
-+.++|-||+|||||++.|++.+...+-+++
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~ 206 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV 206 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHHCTTSE
T ss_pred EEEEecCCCCChhHHHHHHHHHHhhcCCCee
Confidence 5677899999999999999998876443433
No 451
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=84.49 E-value=0.61 Score=42.84 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
+.+=|+++|.+|+||||+..+|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999988754
No 452
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=84.48 E-value=0.64 Score=44.11 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
...-|+++|.+|+|||||..+|..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 467899999999999999988864
No 453
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=84.46 E-value=0.46 Score=47.36 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
-++.++|..|||||||.+.|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37888999999999999999976
No 454
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=84.31 E-value=0.6 Score=48.60 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=25.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEec
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~ 387 (753)
+++++|.+|+|||++++++.+.+.. +...++.
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~~ 63 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNL---PYIYLDL 63 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC---CEEEEEG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCC---CEEEEEc
Confidence 8999999999999999999988642 3444544
No 455
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=84.28 E-value=0.57 Score=42.94 Aligned_cols=21 Identities=48% Similarity=0.491 Sum_probs=18.8
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 004453 354 IVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 354 IvmvGLPGSGKSTlAr~L~r~ 374 (753)
|+++|.+|+|||++..+|...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998653
No 456
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=84.07 E-value=0.64 Score=43.15 Aligned_cols=25 Identities=12% Similarity=0.302 Sum_probs=21.1
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
...+=|+++|.+|+|||||..+|..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3567889999999999999988853
No 457
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=84.07 E-value=0.47 Score=48.15 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.-++.++|..||||||+.+.|+..+.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34899999999999999999987653
No 458
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=84.04 E-value=0.58 Score=44.18 Aligned_cols=27 Identities=22% Similarity=0.162 Sum_probs=22.1
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
..+=|+++|.+|+|||||.+.|.....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 456799999999999999987765543
No 459
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=83.85 E-value=0.77 Score=43.64 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.3
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
...+=|+++|.+|+|||||..+|...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 45678999999999999999988753
No 460
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=83.78 E-value=0.58 Score=47.71 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=22.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-++.++|..||||||+.+.|+..+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4889999999999999999997654
No 461
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=83.76 E-value=0.51 Score=49.94 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
+++++|..||||||+.+.|....
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 88999999999999999998753
No 462
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=83.74 E-value=0.61 Score=43.62 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=20.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
..+=|+++|.+|+|||||..+|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 356789999999999999988874
No 463
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=83.74 E-value=0.63 Score=43.10 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
.++-|+++|.+|+|||||..+|..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999998874
No 464
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=83.73 E-value=0.59 Score=43.79 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
++.-|+++|.+|+|||||..+|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 457899999999999999988873
No 465
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=83.69 E-value=0.71 Score=44.33 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.0
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
..++-|+++|.+|+|||||..+|..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4578899999999999999998864
No 466
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=83.61 E-value=0.67 Score=44.32 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.3
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
..++=|+++|.+|+|||||..+|..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4566799999999999999998853
No 467
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=83.60 E-value=0.39 Score=51.61 Aligned_cols=30 Identities=23% Similarity=0.107 Sum_probs=23.4
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhhcC
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~~g 379 (753)
+.+.|++-|.-|+||||+++.|+++|...+
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~~~g 32 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 457899999999999999999999988665
No 468
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=83.59 E-value=0.54 Score=45.41 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.4
Q ss_pred CccEEEEEEccCCCCHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLT 372 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~ 372 (753)
...+-|+++|.||+|||||..+|.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999998874
No 469
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.55 E-value=0.68 Score=55.67 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHh
Q 004453 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-++++|-||+|||++|+.|++.+.
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHh
Confidence 468899999999999999999984
No 470
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=83.52 E-value=3.5 Score=46.02 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
..+=|+++|.+++|||||..+|...
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4678899999999999999998655
No 471
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=83.50 E-value=3.4 Score=48.55 Aligned_cols=38 Identities=11% Similarity=0.218 Sum_probs=27.4
Q ss_pred CCeEEEEeCCCC-CHHHHHHHHHHHcCCceEEEEEEEeC
Q 004453 433 GGQVGIFDATNS-SRKRRNMLMKMAEGNCKIIFLETICN 470 (753)
Q Consensus 433 ~G~vVIlDATn~-~~~~R~~l~~l~~~~~~vifIE~~c~ 470 (753)
++-++|+|++.. ..+.+..|..+...+.+++++--.++
T Consensus 102 D~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD 140 (691)
T 1dar_A 102 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMD 140 (691)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCC
Confidence 588999999986 45567777777666777766655554
No 472
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=83.48 E-value=0.69 Score=52.58 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
...+|.++|++|.||||||++++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999996
No 473
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=83.47 E-value=3.5 Score=48.21 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=23.0
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
....|+++|.+|+|||||...|....+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcC
Confidence 346899999999999999999986654
No 474
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=83.44 E-value=0.59 Score=43.98 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.5
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 004453 353 AIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 353 lIvmvGLPGSGKSTlAr~L~r 373 (753)
=|+++|.+|+|||||..+|..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999988874
No 475
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=83.40 E-value=0.72 Score=43.05 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
..+=|+++|.+|+|||||..+|..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhh
Confidence 356799999999999999988874
No 476
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=83.37 E-value=4.3 Score=44.09 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
.+-|+++|.+++|||||..+|....
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~ 27 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKIL 27 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChh
Confidence 4678999999999999999998764
No 477
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=83.34 E-value=0.53 Score=48.76 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-++.++|..||||||+.+.|+..+.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4889999999999999999986543
No 478
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=83.31 E-value=0.73 Score=43.24 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
..+=|+++|.+|+|||||..+|...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4678999999999999999988753
No 479
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=83.27 E-value=3.6 Score=47.02 Aligned_cols=75 Identities=15% Similarity=0.204 Sum_probs=50.6
Q ss_pred CCeEEEEeCCCC-CHHHHHHHHHHHcCCceEE-EEEEEeCcHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHhcc-
Q 004453 433 GGQVGIFDATNS-SRKRRNMLMKMAEGNCKII-FLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY- 509 (753)
Q Consensus 433 ~G~vVIlDATn~-~~~~R~~l~~l~~~~~~vi-fIE~~c~d~~~i~rni~~r~~~~pd~~~~~d~e~al~df~~Ri~~y- 509 (753)
+|-++|+||+.. ..+.+..|+.+.+.+.+.+ ||. .. |-.++ +++..+++...++...
T Consensus 125 DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fIN-K~------------------Dr~~a-d~~~~~~~i~~~l~~~~ 184 (548)
T 3vqt_A 125 DSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVN-KM------------------DREAL-HPLDVMADIEQHLQIEC 184 (548)
T ss_dssp SEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEE-CT------------------TSCCC-CHHHHHHHHHHHHTSEE
T ss_pred CceEEEeecCCCcccccHHHHHHHHHhCCceEEEEe-cc------------------cchhc-chhHhhhhhhhhcCCce
Confidence 489999999987 4568888888877777765 442 11 22345 7899999999988654
Q ss_pred cccccCCCCC-ceEEEeec
Q 004453 510 EKVYEPVDEG-SYIKMIDM 527 (753)
Q Consensus 510 ~~~yEpl~e~-~yik~i~~ 527 (753)
....-|+..+ .+.-++|.
T Consensus 185 ~p~~~Pig~~~~f~g~vdl 203 (548)
T 3vqt_A 185 APMTWPIGMGSSFKGTYDL 203 (548)
T ss_dssp EESEEEESCGGGCCEEEET
T ss_pred EeEEeeeecCCcccceEee
Confidence 2334466654 55555555
No 480
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=83.19 E-value=0.73 Score=43.44 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=21.2
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
..++-|+++|.+|+||||+..+|..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999988864
No 481
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=83.12 E-value=0.63 Score=47.54 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=21.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
-++.++|..||||||+.+.|+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999974
No 482
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=83.11 E-value=0.64 Score=48.34 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=21.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHH
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYL 375 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L 375 (753)
-+++++|.+|+|||++++++.+.+
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc
Confidence 388899999999999999999875
No 483
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=82.98 E-value=0.64 Score=45.07 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=20.5
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
+..-|+++|.+|+|||||..+|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999988754
No 484
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=82.79 E-value=0.89 Score=43.39 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
..+-|+++|.+|+|||||..+|...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999888643
No 485
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=82.75 E-value=0.68 Score=44.35 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=19.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
+.-|+++|.||+||||+..+|..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999998875
No 486
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=82.72 E-value=0.57 Score=47.86 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-++.++|..||||||+.+.|+..+.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999987653
No 487
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=82.70 E-value=3.1 Score=47.32 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=21.8
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
+..-|+++|.+|+|||||..+|..+
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCChHHHHHHHHHhh
Confidence 3568999999999999999999854
No 488
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=82.69 E-value=0.55 Score=50.59 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=34.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHhhcCCceEEEeccch
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~~~gi~t~v~n~d~y 390 (753)
+++.++.+-.|.||||+|..|+..|...|.++-+++.|-.
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q 41 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQ 41 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCC
Confidence 4566667999999999999999999999999999988744
No 489
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=82.67 E-value=0.69 Score=47.03 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.-++.++|..||||||+.+.|+..+.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999987654
No 490
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=82.64 E-value=0.77 Score=44.38 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=19.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLT 372 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~ 372 (753)
++.-|+++|.+|+|||||..+|.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34568999999999999999885
No 491
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=82.61 E-value=1 Score=50.08 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
.+.-|+++|.|++|||+|..+|..
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~ 217 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLG 217 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHT
T ss_pred ccceeEEecCCCCCHHHHHHHHhC
Confidence 467889999999999999988873
No 492
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=82.49 E-value=0.8 Score=43.24 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
.++-|+++|.+|+|||||..+|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999988753
No 493
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=82.48 E-value=0.68 Score=44.41 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHH
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
.+=|+++|.+|+|||||..+|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 46789999999999999988864
No 494
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=82.46 E-value=0.59 Score=48.20 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=22.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
.-++.++|..||||||+.+.|+..+.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34889999999999999999986653
No 495
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=82.44 E-value=0.94 Score=42.84 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
..+=|+++|.+|+|||||..+|...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999988753
No 496
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=82.43 E-value=0.85 Score=43.67 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=21.6
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
...+-|+++|.+|+|||||..+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34678999999999999999988754
No 497
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=82.35 E-value=0.66 Score=44.07 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=21.2
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r~ 374 (753)
...+-|+++|.+|+|||||..+|...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999888644
No 498
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=82.30 E-value=0.42 Score=57.30 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=23.9
Q ss_pred ccEEEEEEccCCCCHHHHHHHHHHHHhh
Q 004453 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (753)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~L~r~L~~ 377 (753)
.+..++|+|.||+||||+|++|+..++.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 3446889999999999999999998753
No 499
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=82.30 E-value=0.6 Score=48.67 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=22.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHh
Q 004453 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (753)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~L~r~L~ 376 (753)
-++.++|..||||||+.+.|+..+.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3889999999999999999987654
No 500
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.28 E-value=0.87 Score=43.80 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=20.7
Q ss_pred CccEEEEEEccCCCCHHHHHHHHHH
Q 004453 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (753)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~L~r 373 (753)
...+-|+++|.+|+|||||..+|..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3467899999999999999998874
Done!